Citrus Sinensis ID: 010380
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 512 | 2.2.26 [Sep-21-2011] | |||||||
| Q5N800 | 504 | Probable chlorophyll(ide) | yes | no | 0.921 | 0.936 | 0.722 | 0.0 | |
| Q93ZA0 | 496 | Probable chlorophyll(ide) | yes | no | 0.958 | 0.989 | 0.698 | 0.0 | |
| Q84ST4 | 343 | Chlorophyll(ide) b reduct | no | no | 0.441 | 0.658 | 0.471 | 1e-54 | |
| Q8LEU3 | 348 | Chlorophyll(ide) b reduct | no | no | 0.447 | 0.658 | 0.464 | 9e-53 | |
| P39483 | 261 | Glucose 1-dehydrogenase 2 | no | no | 0.361 | 0.708 | 0.307 | 5e-16 | |
| Q08632 | 271 | Short-chain type dehydrog | N/A | no | 0.388 | 0.734 | 0.288 | 2e-15 | |
| P07999 | 262 | Glucose 1-dehydrogenase B | no | no | 0.367 | 0.717 | 0.299 | 2e-15 | |
| Q59787 | 256 | Sorbitol dehydrogenase OS | yes | no | 0.351 | 0.703 | 0.272 | 3e-14 | |
| Q6NUE2 | 236 | Carbonyl reductase family | N/A | no | 0.347 | 0.754 | 0.297 | 3e-14 | |
| O31680 | 248 | Uncharacterized oxidoredu | yes | no | 0.345 | 0.713 | 0.278 | 5e-14 |
| >sp|Q5N800|NYC1_ORYSJ Probable chlorophyll(ide) b reductase NYC1, chloroplastic OS=Oryza sativa subsp. japonica GN=NYC1 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 718 bits (1853), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/493 (72%), Positives = 407/493 (82%), Gaps = 21/493 (4%)
Query: 40 GAYKRRYGLHMQP--------CRSFKTD-DKGENEAESELKLKKTS-------GFWSSLK 83
G +R LH +P CR+FK + D G EA S T+ G LK
Sbjct: 13 GRLRRSPELHARPYHRPSLLRCRAFKQEADNGGEEASSSPPPPTTAEARRRRKGPLYKLK 72
Query: 84 DVIFRVNGPGSQSSD----EYCKAVAKVEKVFSSIAIQIGRCIVTMMSTGVVLAVGFQLS 139
I + G S +++ EY +AV K E++F S+A Q+GR ++TMMS+GVVL VGFQLS
Sbjct: 73 AAIQGLAGSRSAAAEAYGGEYQRAVEKAEEIFFSVATQVGRYVITMMSSGVVLGVGFQLS 132
Query: 140 GGDSQMNALIWYSWLGGIIIGTMVGANMVLEEHCKAGPRNVVITGSTRGLGKALAREFLL 199
GGDSQMN LIWYSWLGG+IIGTM+GAN VLEEHCKAGPRNVVITGSTRGLGKALAREFLL
Sbjct: 133 GGDSQMNTLIWYSWLGGVIIGTMIGANSVLEEHCKAGPRNVVITGSTRGLGKALAREFLL 192
Query: 200 SGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPADVQ 259
SGDRVV+ASRS ESV T+ ELEEN++EG+ A ++ L+HAKV G +CDVC+P DV+
Sbjct: 193 SGDRVVIASRSPESVLQTINELEENIQEGLSVAKKKQREILLHAKVVGTSCDVCKPEDVK 252
Query: 260 KLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMR 319
KL NFA +E GSIDIWINNAGTNKGF+PL+ F++E+I QIVSTNLVGS+LCTREAM VM+
Sbjct: 253 KLVNFAKDELGSIDIWINNAGTNKGFRPLVNFSDEDISQIVSTNLVGSLLCTREAMNVMQ 312
Query: 320 DQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMV 379
Q KGGH+FNMDGAGSGGSSTPLTAVYGSTKCGLRQ QASL KES+RSKVGVHTASPGMV
Sbjct: 313 HQQKGGHVFNMDGAGSGGSSTPLTAVYGSTKCGLRQFQASLLKESRRSKVGVHTASPGMV 372
Query: 380 LTDLLLSGSTIQNKQMFNIICELPETVARTLVPRIRVVKGSGKAINYLTPPRILLALVTA 439
LTDLLLSGS+++NKQMFN+ICELPETVARTLVPR+RVVKGSGKAINYLTPPRILLALVTA
Sbjct: 373 LTDLLLSGSSLRNKQMFNLICELPETVARTLVPRMRVVKGSGKAINYLTPPRILLALVTA 432
Query: 440 WLRRGRWFDDQGRALYAAEADRIRNWAENRARFSFTDAMEMYTENTWVSVFSLSVVCAFI 499
W+RRGRWFD++GRA+YAAEADRIRNWAE+RARFSFTDAMEMYTENTWVSVFSLSVVCAFI
Sbjct: 433 WVRRGRWFDEEGRAVYAAEADRIRNWAESRARFSFTDAMEMYTENTWVSVFSLSVVCAFI 492
Query: 500 ILSSTGSNTFPGT 512
ILSS+G PGT
Sbjct: 493 ILSSSG-GPLPGT 504
|
Required for proper chloroplast degradation. Involved in chlorophyll b degradation. Oryza sativa subsp. japonica (taxid: 39947) EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 9EC: 4 |
| >sp|Q93ZA0|NYC1_ARATH Probable chlorophyll(ide) b reductase NYC1, chloroplastic OS=Arabidopsis thaliana GN=NYC1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 710 bits (1833), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/511 (69%), Positives = 405/511 (79%), Gaps = 20/511 (3%)
Query: 5 TLTKPHISLQTL-HYYCFKDQQRGPCLRPASYRSGLGAYKRRYGLHMQPCRSFKTDDKGE 63
TLTK + Q L H F+D P S L +R +++ C E
Sbjct: 3 TLTKIQVYPQVLEHRLFFRD--------PIRVGSRLTCRERSNRVYVHRC---------E 45
Query: 64 NEAESELKLKKT--SGFWSSLKDVIFRVNGPGSQSSDEYCKAVAKVEKVFSSIAIQIGRC 121
+ E + K++K +G W SLK + G S DEY + V +E VFSS+A+QI R
Sbjct: 46 KKVERKRKVEKFKGNGSWDSLKSGFLGFSKLGFLSKDEYNQKVENLEMVFSSVAVQIARY 105
Query: 122 IVTMMSTGVVLAVGFQLSGGDSQMNALIWYSWLGGIIIGTMVGANMVLEEHCKAGPRNVV 181
IVTM STG +L +GFQLSGGDS MN+L+WYSWLGGIIIGTM GANMVLE+H +AGPRNVV
Sbjct: 106 IVTMTSTGAILLIGFQLSGGDSSMNSLVWYSWLGGIIIGTMTGANMVLEDHYRAGPRNVV 165
Query: 182 ITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLV 241
ITGSTRGLGKALAREFLLSGDRV+V SRSSESV MTV ELE+NLKE M A S++K L
Sbjct: 166 ITGSTRGLGKALAREFLLSGDRVIVTSRSSESVDMTVKELEQNLKEIMSNASESARKKLS 225
Query: 242 HAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVS 301
AKV GIACDVC+P DV+KLSNFAV E GSI+IWINNAGTNKGF+PLL+FT E+I QIVS
Sbjct: 226 DAKVVGIACDVCKPEDVEKLSNFAVKELGSINIWINNAGTNKGFRPLLEFTEEDITQIVS 285
Query: 302 TNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLF 361
TNL+GSILCTR AM VM Q GGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQ S+
Sbjct: 286 TNLIGSILCTRGAMDVMSRQHSGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQFHGSIV 345
Query: 362 KESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPRIRVVKGSG 421
KES+++ VG+HTASPGMVLT+LLLSGS+I+NKQMFNIICELPETVARTLVPR+RVVKGSG
Sbjct: 346 KESQKTNVGLHTASPGMVLTELLLSGSSIKNKQMFNIICELPETVARTLVPRMRVVKGSG 405
Query: 422 KAINYLTPPRILLALVTAWLRRGRWFDDQGRALYAAEADRIRNWAENRARFSFTDAMEMY 481
KA+NYLTPPRILLA+VT+WLRRGRWFDDQGRALYAAEADR+RNWAENR R S TDAMEMY
Sbjct: 406 KAVNYLTPPRILLAIVTSWLRRGRWFDDQGRALYAAEADRLRNWAENRTRLSLTDAMEMY 465
Query: 482 TENTWVSVFSLSVVCAFIILSSTGSNTFPGT 512
TENTWVSVFSLSVVCAFIIL ST ++FPGT
Sbjct: 466 TENTWVSVFSLSVVCAFIILQSTTPSSFPGT 496
|
Involved in chlorophyll b degradation. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 9 EC: 4 |
| >sp|Q84ST4|NOL_ORYSJ Chlorophyll(ide) b reductase NOL, chloroplastic OS=Oryza sativa subsp. japonica GN=NOL PE=1 SV=1 | Back alignment and function description |
|---|
Score = 214 bits (545), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 116/246 (47%), Positives = 158/246 (64%), Gaps = 20/246 (8%)
Query: 177 PRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSS 236
P NV+ITGST+G+G ALA+EFL +GD VV+ SRS+E V VT+L
Sbjct: 73 PYNVLITGSTKGIGYALAKEFLKAGDNVVICSRSAERVESAVTDL--------------- 117
Query: 237 KKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNK-GFKPLLQFTNEE 295
KK V GI CDV E DV+ L +FA ++ IDIWINNAG+N +KPL++ ++E
Sbjct: 118 KKEFGEQHVWGIVCDVREGKDVKALVDFARDKMKYIDIWINNAGSNAYSYKPLVETSDEA 177
Query: 296 IEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQ 355
+ ++++TN +G ++C REA+ +MR+QP+GGHIFN+DGAGS G TP A YG+TK +
Sbjct: 178 LMEVITTNTLGLMICCREAINMMRNQPRGGHIFNIDGAGSDGRPTPRFAAYGATKRSVVH 237
Query: 356 LQASLFKESKRSKVG---VHTASPGMVLTDLLLSGSTIQNKQMF-NIICELPETVARTLV 411
L SL E + ++V VH SPGMV TDLL+SG+T + + F NI+ E VA LV
Sbjct: 238 LTKSLQAELQMNEVNNVMVHNLSPGMVTTDLLMSGATTKQAKFFINILAEPANVVADYLV 297
Query: 412 PRIRVV 417
P IR +
Sbjct: 298 PNIRAI 303
|
Required for chlorophyll b degradation. Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 9 EC: 4 |
| >sp|Q8LEU3|NOL_ARATH Chlorophyll(ide) b reductase NOL, chloroplastic OS=Arabidopsis thaliana GN=NOL PE=2 SV=1 | Back alignment and function description |
|---|
Score = 208 bits (529), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 116/250 (46%), Positives = 151/250 (60%), Gaps = 21/250 (8%)
Query: 177 PRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSS 236
P N++ITGST+G+G ALAREFL +GD VV+ SRS+E V V L+E E
Sbjct: 79 PYNILITGSTKGIGYALAREFLKAGDNVVICSRSAERVETAVQSLKEEFGE--------- 129
Query: 237 KKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNK-GFKPLLQFTNEE 295
V G CDV E DV++L ++ IDIWINNAG+N FKPL + ++E+
Sbjct: 130 -------HVWGTKCDVTEGKDVRELVAYSQKNLKYIDIWINNAGSNAYSFKPLAEASDED 182
Query: 296 IEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQ 355
+ ++V TN +G +LC REAM +M Q +GGHIFN+DGAGS G TP A YG+TK +
Sbjct: 183 LIEVVKTNTLGLMLCCREAMNMMLTQSRGGHIFNIDGAGSDGRPTPRFAAYGATKRSVVH 242
Query: 356 LQASLFKESKRSKVG---VHTASPGMVLTDLLLSGSTIQNKQMF-NIICELPETVARTLV 411
L SL E + V VH SPGMV TDLL+SG+T + + F N++ E E VA LV
Sbjct: 243 LTKSLQAELQMQDVKNVVVHNLSPGMVTTDLLMSGATTKQAKFFINVLAEPAEVVAEYLV 302
Query: 412 PRIRVVKGSG 421
P IR + SG
Sbjct: 303 PNIRAIPASG 312
|
Required for chlorophyll b degradation. Chlorophyll b, chlorophyllide b, pheophorbide b and pheophytin b can be used as substrates. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 9 EC: 4 |
| >sp|P39483|DHG2_BACME Glucose 1-dehydrogenase 2 OS=Bacillus megaterium GN=gdhII PE=3 SV=1 | Back alignment and function description |
|---|
Score = 86.3 bits (212), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 99/205 (48%), Gaps = 20/205 (9%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVT-ELEENLKEGMMAAGGSSKK 238
VV+TG ++GLG+A+A F +VVV RS+E + V E+EE + ++ G
Sbjct: 10 VVVTGGSKGLGRAMAVRFGQEQSKVVVNYRSNEEEALEVKKEIEEAGGQAIIVRG----- 64
Query: 239 NLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQ 298
DV + DV L AV EFGS+D+ INNAG P + + E Q
Sbjct: 65 ------------DVTKEEDVVNLVETAVKEFGSLDVMINNAGVENPV-PSHELSLENWNQ 111
Query: 299 IVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQA 358
++ TNL G+ L +REA++ + G++ NM PL Y ++K G++ +
Sbjct: 112 VIDTNLTGAFLGSREAIKYFVENDIKGNVINMSSVHE-MIPWPLFVHYAASKGGMKLMTE 170
Query: 359 SLFKESKRSKVGVHTASPGMVLTDL 383
+L E + V+ PG + T +
Sbjct: 171 TLALEYAPKGIRVNNIGPGAIDTPI 195
|
Bacillus megaterium (taxid: 1404) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 7 |
| >sp|Q08632|SDR1_PICAB Short-chain type dehydrogenase/reductase OS=Picea abies PE=2 SV=1 | Back alignment and function description |
|---|
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 106/218 (48%), Gaps = 19/218 (8%)
Query: 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGS 235
G R ++TG++RG+G+ +A G +VV+ S++ V + N
Sbjct: 20 GGRVAIVTGASRGIGREIALNMAEKGAKVVIHYSSNQHAAEEVASIINN----------- 68
Query: 236 SKKNLVHAKVAGIAC--DVCEPADVQKLSNFAVNEFGSIDIWINNAG-TNKGFKPLLQFT 292
K V I C DV EP+ V +L + A + FG + I +NNAG T+ + L Q +
Sbjct: 69 -KSPSSGDGVRAIVCKADVAEPSQVAQLFDTAEHAFGPLHIVVNNAGVTDSKYPTLAQTS 127
Query: 293 NEEIEQIVSTNLVGSILCTREAM-RVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKC 351
+EE ++I N G+ LC+REA RV+R GG I N+ + P Y ++K
Sbjct: 128 DEEWDRIFQVNCKGAFLCSREAAKRVVRG--GGGRIINISSSLV-AMPIPRYGAYTASKA 184
Query: 352 GLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGST 389
+ + L +E + +++ + +PG V TD+ +G +
Sbjct: 185 AVEMMTRILAQELRGTQITANCVAPGPVATDMFFAGKS 222
|
Picea abies (taxid: 3329) EC: 1 EC: . EC: - EC: . EC: - EC: . EC: - |
| >sp|P07999|DHGB_BACME Glucose 1-dehydrogenase B OS=Bacillus megaterium GN=gdhB PE=1 SV=2 | Back alignment and function description |
|---|
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 96/204 (47%), Gaps = 16/204 (7%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
VVITGS+ GLGK++A F +VVV RS E +V LEE +K+
Sbjct: 10 VVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSV--LEEEIKK------------ 55
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQI 299
V + + DV +DV L A+ EFG +D+ INNAG + + + ++
Sbjct: 56 -VGGEAIAVKGDVTVESDVINLVQSAIKEFGKLDVMINNAGMENPVSSH-EMSLSDWNKV 113
Query: 300 VSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQAS 359
+ TNL G+ L +REA++ + G + NM PL Y ++K G++ + +
Sbjct: 114 IDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEWKIPWPLFVHYAASKGGMKLMTET 173
Query: 360 LFKESKRSKVGVHTASPGMVLTDL 383
L E + V+ PG + T +
Sbjct: 174 LALEYAPKGIRVNNIGPGAINTPI 197
|
Bacillus megaterium (taxid: 1404) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 7 |
| >sp|Q59787|DHSO_RHOSH Sorbitol dehydrogenase OS=Rhodobacter sphaeroides GN=polS PE=1 SV=1 | Back alignment and function description |
|---|
Score = 80.5 bits (197), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 92/202 (45%), Gaps = 22/202 (10%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ +ITGS RG+G+A A ++ G RV +A + E+ R T E
Sbjct: 6 KTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAE----------------- 48
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
+ IA DV + A + + ++ +GSIDI +NNA P+++ T E +
Sbjct: 49 ---IGPAACAIALDVTDQASIDRCVAELLDRWGSIDILVNNAALFD-LAPIVEITRESYD 104
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQ 357
++ + N+ G++ + R M +GG I NM + +G L VY +TK + L
Sbjct: 105 RLFAINVSGTLFMMQAVARAMIAGGRGGKIINM-ASQAGRRGEALVGVYCATKAAVISLT 163
Query: 358 ASLFKESKRSKVGVHTASPGMV 379
S R + V+ +PG+V
Sbjct: 164 QSAGLNLIRHGINVNAIAPGVV 185
|
Catalyzes the oxidation of D-glucitol (sorbitol) to D-fructose, galactitol to D-tagatose and of L-iditol. Rhodobacter sphaeroides (taxid: 1063) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 4 |
| >sp|Q6NUE2|CBR4_XENLA Carbonyl reductase family member 4 OS=Xenopus laevis GN=cbr4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 80.1 bits (196), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 102/202 (50%), Gaps = 24/202 (11%)
Query: 182 ITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLV 241
+ G +RG+GKA+A+ +V V SR+ E + VTE+ +L
Sbjct: 7 VFGGSRGIGKAVAKLLAQKDYKVAVISRNLEVAQAAVTEIGAHL---------------- 50
Query: 242 HAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVS 301
++CDV + ++Q N G+ID +N+AG ++ LL+ +E+I ++S
Sbjct: 51 -----ALSCDVSKENEIQCTFKEIKNNLGNIDYLVNSAGISRD-ALLLRTRSEDIMSLLS 104
Query: 302 TNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLF 361
NLVG+I + A++ M Q +GG I N+ G+ G ++YG++K GL SL
Sbjct: 105 INLVGTIQTCKVALKGMIQQ-QGGSIVNI-GSIVGHKGNIGQSIYGASKEGLIGFSKSLA 162
Query: 362 KESKRSKVGVHTASPGMVLTDL 383
KE + + V+ +PG + TD+
Sbjct: 163 KEVAKRNIRVNVVAPGFIRTDM 184
|
The heteroteramer with HSD17B8 has NADH-dependent 3-ketoacyl-acyl carrier protein reductase activity. May play a role in biosynthesis of fatty acids in mitochondria. The homotetramer may act as NADPH-dependent quinone reductase. Has broad substrate specificity and reduces 9,10-phenanthrenequinone, 1,4-benzoquinone and various other o-quinones and p-quinones (in vitro). Xenopus laevis (taxid: 8355) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|O31680|YKVO_BACSU Uncharacterized oxidoreductase YkvO OS=Bacillus subtilis (strain 168) GN=ykvO PE=3 SV=1 | Back alignment and function description |
|---|
Score = 79.7 bits (195), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 97/201 (48%), Gaps = 24/201 (11%)
Query: 181 VITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNL 240
++TG T G+G A A++F+ G V + R + V ++ +N
Sbjct: 10 LVTGGTSGIGLATAQKFVNEGAYVYITGRRQNELDKAVNQIGKN---------------- 53
Query: 241 VHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIV 300
V G+ D+ + D+ KL + E G +DI NAG F PL + T E++++
Sbjct: 54 ----VTGVQGDISKLEDLDKLYDIIKQEKGKLDILFANAGIGN-FLPLGEITEEQVDRTF 108
Query: 301 STNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASL 360
N+ G+I ++A+ + D K G I + G+ +G P +VYG++K LR L +
Sbjct: 109 DINVKGTIFTVQKALSLFPD--KVGSII-VTGSTAGSIGNPAFSVYGASKAALRALVRNW 165
Query: 361 FKESKRSKVGVHTASPGMVLT 381
+ K +++ V+ SPG +LT
Sbjct: 166 ILDLKGTEIRVNVVSPGGILT 186
|
Bacillus subtilis (strain 168) (taxid: 224308) EC: 1 EC: . EC: - EC: . EC: - EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 512 | ||||||
| 356520529 | 514 | PREDICTED: probable chlorophyll(ide) b r | 0.988 | 0.984 | 0.759 | 0.0 | |
| 255546477 | 517 | short-chain dehydrogenase, putative [Ric | 0.978 | 0.969 | 0.778 | 0.0 | |
| 356531269 | 515 | PREDICTED: probable chlorophyll(ide) b r | 0.990 | 0.984 | 0.744 | 0.0 | |
| 225445234 | 517 | PREDICTED: probable chlorophyll(ide) b r | 0.982 | 0.972 | 0.756 | 0.0 | |
| 449506622 | 521 | PREDICTED: probable chlorophyll(ide) b r | 0.988 | 0.971 | 0.737 | 0.0 | |
| 449464672 | 521 | PREDICTED: probable chlorophyll(ide) b r | 0.988 | 0.971 | 0.735 | 0.0 | |
| 357500769 | 514 | Oxidoreductase [Medicago truncatula] gi| | 0.908 | 0.904 | 0.769 | 0.0 | |
| 224142147 | 436 | predicted protein [Populus trichocarpa] | 0.851 | 1.0 | 0.856 | 0.0 | |
| 357128420 | 496 | PREDICTED: probable chlorophyll(ide) b r | 0.896 | 0.925 | 0.752 | 0.0 | |
| 115435420 | 504 | Os01g0227100 [Oryza sativa Japonica Grou | 0.921 | 0.936 | 0.722 | 0.0 |
| >gi|356520529|ref|XP_003528914.1| PREDICTED: probable chlorophyll(ide) b reductase NYC1, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 792 bits (2045), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/516 (75%), Positives = 441/516 (85%), Gaps = 10/516 (1%)
Query: 4 ATLTKPHISLQTLHYYCFKDQQRGPCLRPASYRSGLGAYKRRYGLHMQPCRSFKTDDKGE 63
AT+ K H+ + L+ + +RG P+ G G Y R+ + + CR+F+T+D G+
Sbjct: 2 ATVVKLHVVPECLNQQKTRSLRRGFGSCPSPGVLGFGHYCDRFSVKV--CRAFRTEDGGD 59
Query: 64 -------NEAESELKLKKTSGFWSSLKDVIFRVNGPGSQSSDEYCKAVAKVEKVFSSIAI 116
N ++E K K+ SGFWSSLK ++ R GS+S DEY +AVAKVE + SSIAI
Sbjct: 60 VKEKKLRNLKKNEEKTKRESGFWSSLKSILLRNFMVGSKSDDEYRQAVAKVEGLLSSIAI 119
Query: 117 QIGRCIVTMMSTGVVLAVGFQLSGGDSQMNALIWYSWLGGIIIGTMVGANMVLEEHCKAG 176
QIGR IVTMMSTGV+L++GFQ+SGGDSQM+ALIWYSWLGG+IIGTM+GANMVLEEHC+AG
Sbjct: 120 QIGRYIVTMMSTGVILSIGFQMSGGDSQMDALIWYSWLGGVIIGTMIGANMVLEEHCRAG 179
Query: 177 PRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSS 236
PRNVVITGSTRGLGKALAREFLLSGDRV+V SRS ESV+ T+ ELEENLKEG+ A GSS
Sbjct: 180 PRNVVITGSTRGLGKALAREFLLSGDRVIVTSRSPESVQATIKELEENLKEGIANAVGSS 239
Query: 237 KKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEI 296
L HAKV GIACDVCEP DVQ+L+NFAV E G IDIWINNAGTNKGF+PLLQF++E+I
Sbjct: 240 LTKLSHAKVVGIACDVCEPHDVQRLANFAVKELGHIDIWINNAGTNKGFRPLLQFSDEDI 299
Query: 297 EQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQL 356
+QIVSTNLVGSILCTREAMRVMR+Q GHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQL
Sbjct: 300 KQIVSTNLVGSILCTREAMRVMRNQAIAGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQL 359
Query: 357 QASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPRIRV 416
Q SL KE KRSKVGVHTASPGMVLTDLLLSGST+QN+QMFNIICELPETVARTLVPR+RV
Sbjct: 360 QGSLLKECKRSKVGVHTASPGMVLTDLLLSGSTVQNRQMFNIICELPETVARTLVPRMRV 419
Query: 417 VKGSGKAINYLTPPRILLALVTAWLRRGRWFDDQGRALYAAEADRIRNWAENRARFSFTD 476
VKG+GKAINYLTPPRILLALVTAWLRRGRWFDDQGRALYAAEADR+RNWAE+RARFSFTD
Sbjct: 420 VKGTGKAINYLTPPRILLALVTAWLRRGRWFDDQGRALYAAEADRLRNWAEDRARFSFTD 479
Query: 477 AMEMYTENTWVSVFSLSVVCAFIILSSTGSNTFPGT 512
AMEMYTENTW+SVFSLSVVCAFIILSSTGSN PGT
Sbjct: 480 AMEMYTENTWLSVFSLSVVCAFIILSSTGSN-LPGT 514
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255546477|ref|XP_002514298.1| short-chain dehydrogenase, putative [Ricinus communis] gi|223546754|gb|EEF48252.1| short-chain dehydrogenase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 791 bits (2042), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/523 (77%), Positives = 445/523 (85%), Gaps = 22/523 (4%)
Query: 4 ATLTKPHISLQTLHYYCFKDQQRGPCLRPASYRSGLGAYKRRYGLHMQPCRSFKTDDKGE 63
AT+TK HI Q+L Y+ F QQR L P +G G + CRSF+++D E
Sbjct: 3 ATVTKLHIYPQSLDYFSFSKQQRNRLLGPGLSWTGFGGCAVK-------CRSFRSEDGRE 55
Query: 64 NEA--------------ESELKLKKTSGFWSSLKDVIFRVNGPGSQSSDEYCKAVAKVEK 109
E +++++LKK GFWS LKD F S S +EY KAVAK+E+
Sbjct: 56 VEVEVEEKVKECQRKLKKNKIELKKEDGFWSILKDANFGFGRSDSHSKEEYAKAVAKLEE 115
Query: 110 VFSSIAIQIGRCIVTMMSTGVVLAVGFQLSGGDSQMNALIWYSWLGGIIIGTMVGANMVL 169
FSSIA+QIGR IVTMMSTGV+LAVGFQLSGGDSQMN LIWYSWLGGIIIGTM+GANMVL
Sbjct: 116 AFSSIALQIGRYIVTMMSTGVILAVGFQLSGGDSQMNTLIWYSWLGGIIIGTMIGANMVL 175
Query: 170 EEHCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGM 229
+EHC+AGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRS ESV TV ELEENLKEGM
Sbjct: 176 DEHCRAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSPESVDTTVRELEENLKEGM 235
Query: 230 MAAGGSSKKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLL 289
+ G+S+ NL HAKV GIAC+VCEP+DVQKL+NFAV EFGSIDIWINNAGTNKGF+PLL
Sbjct: 236 VTTSGTSRTNLAHAKVVGIACNVCEPSDVQKLANFAVKEFGSIDIWINNAGTNKGFRPLL 295
Query: 290 QFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGST 349
QF++E+I QIVSTNLVGSILCTREAMRV+ +QPKGGHIFNMDGAGSGGSSTPLTAVYGST
Sbjct: 296 QFSDEDINQIVSTNLVGSILCTREAMRVIMNQPKGGHIFNMDGAGSGGSSTPLTAVYGST 355
Query: 350 KCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVART 409
KCGLRQLQASLFKE KRSKVGVHTASPGMVLTDLLLSGST++NKQMFNIICELPETVART
Sbjct: 356 KCGLRQLQASLFKECKRSKVGVHTASPGMVLTDLLLSGSTLKNKQMFNIICELPETVART 415
Query: 410 LVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWFDDQGRALYAAEADRIRNWAENR 469
LVPR+RVVKGSGKAINYLTPPRILLALVTAWLR+GRWFDDQGRALYAAEADR+RNWAENR
Sbjct: 416 LVPRMRVVKGSGKAINYLTPPRILLALVTAWLRQGRWFDDQGRALYAAEADRLRNWAENR 475
Query: 470 ARFSFTDAMEMYTENTWVSVFSLSVVCAFIILSSTGSNTFPGT 512
ARFSFTDAMEMYTENTWVSVFSLSVVCAFIILSST SN FPGT
Sbjct: 476 ARFSFTDAMEMYTENTWVSVFSLSVVCAFIILSST-SNPFPGT 517
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356531269|ref|XP_003534200.1| PREDICTED: probable chlorophyll(ide) b reductase NYC1, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 778 bits (2010), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/516 (74%), Positives = 440/516 (85%), Gaps = 9/516 (1%)
Query: 4 ATLTKPHISLQTLHYYCFKDQQRGPCLRPASYRSGLGAYKRRYGLHMQPCRSFKTDDKGE 63
AT+ K H+ ++L+ + + +RG P+ G G +K ++ CR+F+T+D G+
Sbjct: 2 ATVVKLHVFPESLNQHKTRLLRRGFGSCPSPGVLGFG-HKNYDQFSVKVCRAFRTEDGGD 60
Query: 64 -------NEAESELKLKKTSGFWSSLKDVIFRVNGPGSQSSDEYCKAVAKVEKVFSSIAI 116
N ++E K K+ SGFWSSLK ++ R GS+S DEY +AV KVE + SSIAI
Sbjct: 61 VKEKKFRNLKKNEEKTKRESGFWSSLKSILLRNFMVGSKSDDEYRQAVVKVEGLLSSIAI 120
Query: 117 QIGRCIVTMMSTGVVLAVGFQLSGGDSQMNALIWYSWLGGIIIGTMVGANMVLEEHCKAG 176
QIGR IVTMMSTGV+L++GFQ+SGGDSQM+ALIWYSWLGG+IIGTM+GANMVLEEHC+AG
Sbjct: 121 QIGRYIVTMMSTGVILSIGFQMSGGDSQMDALIWYSWLGGVIIGTMIGANMVLEEHCRAG 180
Query: 177 PRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSS 236
PRNVVITGSTRGLGKALAREFLLSGDRV+V SRS ESV+ T+ ELEENLKEG+ A GSS
Sbjct: 181 PRNVVITGSTRGLGKALAREFLLSGDRVIVTSRSPESVQDTIKELEENLKEGIANAVGSS 240
Query: 237 KKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEI 296
L AKV GI+CDVCEP DVQ+L+NFAV E G IDIWINNAGTNKGF+PLLQF++E+I
Sbjct: 241 LTKLSQAKVIGISCDVCEPHDVQRLANFAVKELGHIDIWINNAGTNKGFRPLLQFSDEDI 300
Query: 297 EQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQL 356
+QIVSTNLVGSILCTREA+R+MR+Q GHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQL
Sbjct: 301 KQIVSTNLVGSILCTREAVRIMRNQANAGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQL 360
Query: 357 QASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPRIRV 416
Q SL KE KRSKVGVHTASPGMVLTDLLLSGST+QN+QMFNIICELPETVARTLVPR+RV
Sbjct: 361 QGSLLKECKRSKVGVHTASPGMVLTDLLLSGSTVQNRQMFNIICELPETVARTLVPRMRV 420
Query: 417 VKGSGKAINYLTPPRILLALVTAWLRRGRWFDDQGRALYAAEADRIRNWAENRARFSFTD 476
VKG+GKAINYLTPPRILLAL+TAWLR+GRWFDDQGRALYAAEADR+RNWAE+RARFSFTD
Sbjct: 421 VKGTGKAINYLTPPRILLALITAWLRQGRWFDDQGRALYAAEADRLRNWAEDRARFSFTD 480
Query: 477 AMEMYTENTWVSVFSLSVVCAFIILSSTGSNTFPGT 512
AMEMYTENTW+SVFSLSVVCAFIILSSTGSN PGT
Sbjct: 481 AMEMYTENTWLSVFSLSVVCAFIILSSTGSN-LPGT 515
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225445234|ref|XP_002280953.1| PREDICTED: probable chlorophyll(ide) b reductase NYC1, chloroplastic [Vitis vinifera] gi|297738824|emb|CBI28069.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 766 bits (1979), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/522 (75%), Positives = 440/522 (84%), Gaps = 19/522 (3%)
Query: 4 ATLTKPHISLQTLHYYCFKDQQRGPCLRPASYRSGLGAYKRRYGLHMQPCRSFKTDDKGE 63
A +TK IS +LH R P RP +++ R G+++ PCRSF++ D GE
Sbjct: 2 AAVTKLQISPYSLHPRTHHRAARWPLRRPQ-----FVSFRGRRGVYLLPCRSFRSGDGGE 56
Query: 64 -------------NEAESELKLKKTSGFWSSLKDVIFRVNGPGSQSSDEYCKAVAKVEKV 110
N E+ ++ K+ SG S K V RV+G ++ +E+ AVAK+E++
Sbjct: 57 LEEQEKESVRKGGNLKENRVEGKEGSGILSFAKSVFVRVSGSFPRTEEEHRIAVAKLEEI 116
Query: 111 FSSIAIQIGRCIVTMMSTGVVLAVGFQLSGGDSQMNALIWYSWLGGIIIGTMVGANMVLE 170
FSSIA+QIGR IVTMMSTGV+LA+GFQLSGGDSQMNALIWYSWLGGIIIGTM+GAN+VLE
Sbjct: 117 FSSIAVQIGRYIVTMMSTGVILAIGFQLSGGDSQMNALIWYSWLGGIIIGTMIGANLVLE 176
Query: 171 EHCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMM 230
EHC+AGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRS ESV TV ELEENLKEGM+
Sbjct: 177 EHCRAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSPESVHATVRELEENLKEGMV 236
Query: 231 AAGGSSKKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQ 290
AGG SK NL AKV GIACDVCEP DVQKL+NFAV+EFGSI+IWINNAGTNKGF+PLLQ
Sbjct: 237 TAGGPSKTNLERAKVVGIACDVCEPDDVQKLANFAVSEFGSINIWINNAGTNKGFRPLLQ 296
Query: 291 FTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTK 350
FT+E+I+QIVSTNLVGS+LCT+EA+RVMR Q GGHIFNMDGAGSGGSSTPLTAVYGSTK
Sbjct: 297 FTDEDIKQIVSTNLVGSLLCTQEAIRVMRSQGNGGHIFNMDGAGSGGSSTPLTAVYGSTK 356
Query: 351 CGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTL 410
CGLRQLQ SL KE KRS VGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTL
Sbjct: 357 CGLRQLQGSLLKECKRSNVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTL 416
Query: 411 VPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWFDDQGRALYAAEADRIRNWAENRA 470
VPR+RVVKG+GKAINYLTPPRILLAL+T WLR+GRWFD+QGRALYAAEADRIRNWAENR
Sbjct: 417 VPRMRVVKGTGKAINYLTPPRILLALITVWLRQGRWFDEQGRALYAAEADRIRNWAENRT 476
Query: 471 RFSFTDAMEMYTENTWVSVFSLSVVCAFIILSSTGSNTFPGT 512
RFSFTDAMEMYTENTWVSVFSLSVVCAFIILSSTGS +FPGT
Sbjct: 477 RFSFTDAMEMYTENTWVSVFSLSVVCAFIILSSTGS-SFPGT 517
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449506622|ref|XP_004162801.1| PREDICTED: probable chlorophyll(ide) b reductase NYC1, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 760 bits (1963), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/521 (73%), Positives = 425/521 (81%), Gaps = 15/521 (2%)
Query: 5 TLTKPHISLQTLHYYCFKDQQRGPCLRPASYRSGLGAYKRR-YGLHMQPCRSFKTDDKGE 63
TL K H+ QT +D L P +R G RR GL ++ CRSF+ D G+
Sbjct: 3 TLAKLHVYPQTFDGPSTRDGHLFGALGPGVHRFDAGVSTRRGRGLCLRKCRSFRGGDGGD 62
Query: 64 NEAES------------ELKLKKTSGFWSSLKDVIFRVNGPGSQSSDEYCKAVAKVEKVF 111
E E+ E+K+KK S FW L+ + S + K +A +E +
Sbjct: 63 FEKENSKGRNRRNSRLKEVKMKKESQFWKLLRSGVLGKFNLLMGSDVDQGKLMANMEGLL 122
Query: 112 SSIAIQIGRCIVTMMSTGVVLAVGFQLSGGDSQMNALIWYSWLGGIIIGTMVGANMVLEE 171
SS A+QIGR IVTMMSTGVVLAVGFQLSGGDSQMN LIWYSWLGG+IIGTM+GANMVLEE
Sbjct: 123 SSAAVQIGRYIVTMMSTGVVLAVGFQLSGGDSQMNTLIWYSWLGGVIIGTMIGANMVLEE 182
Query: 172 HCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMA 231
HC AGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESV+ T+ ELEENLK G+M
Sbjct: 183 HCSAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVQETLRELEENLK-GLMV 241
Query: 232 AGGSSKKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQF 291
GSS K+L HAKV G C+VC+P DV KL+NF +NE GSIDIWINNAGTNKGF+PLLQF
Sbjct: 242 RSGSSNKSLAHAKVVGTTCNVCDPEDVHKLANFTLNELGSIDIWINNAGTNKGFRPLLQF 301
Query: 292 TNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKC 351
T+E+I QI+STNLVGS+LCTREAMRVMR+Q KGGHIFNMDGAGSGGSSTPLTAVYGSTKC
Sbjct: 302 TDEDITQILSTNLVGSLLCTREAMRVMRNQAKGGHIFNMDGAGSGGSSTPLTAVYGSTKC 361
Query: 352 GLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLV 411
GLRQLQ+SL KE +RS VGVHTASPGMVLTDLLLSGST++NKQMFNIICELPETVARTLV
Sbjct: 362 GLRQLQSSLLKECRRSNVGVHTASPGMVLTDLLLSGSTVRNKQMFNIICELPETVARTLV 421
Query: 412 PRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWFDDQGRALYAAEADRIRNWAENRAR 471
PR+RVVKG+GKAINYLTPPRILLALVTAWLRRGRWFDDQGRALYAAEADRIRNWAENR R
Sbjct: 422 PRMRVVKGTGKAINYLTPPRILLALVTAWLRRGRWFDDQGRALYAAEADRIRNWAENRTR 481
Query: 472 FSFTDAMEMYTENTWVSVFSLSVVCAFIILSSTGSNTFPGT 512
FSFTDAMEMYTENTWVSVFSLSVVCAFIILS+T +NT PGT
Sbjct: 482 FSFTDAMEMYTENTWVSVFSLSVVCAFIILSTT-NNTLPGT 521
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449464672|ref|XP_004150053.1| PREDICTED: probable chlorophyll(ide) b reductase NYC1, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 757 bits (1954), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/521 (73%), Positives = 424/521 (81%), Gaps = 15/521 (2%)
Query: 5 TLTKPHISLQTLHYYCFKDQQRGPCLRPASYRSGLGAYKRR-YGLHMQPCRSFKTDDKGE 63
TL K H+ QT +D L P +R G RR GL ++ CRSF+ D G+
Sbjct: 3 TLAKLHVYPQTFDGPSTRDGHLFGALGPGLHRFDAGVSTRRGRGLCLRKCRSFRGGDGGD 62
Query: 64 NEAES------------ELKLKKTSGFWSSLKDVIFRVNGPGSQSSDEYCKAVAKVEKVF 111
E E+ E+K+KK S FW L+ + S + K +A +E +
Sbjct: 63 FEKENSKGRNRRNSRLKEVKMKKESQFWKLLRSGVLGKFNLLMGSDVDQGKLMANMEGLL 122
Query: 112 SSIAIQIGRCIVTMMSTGVVLAVGFQLSGGDSQMNALIWYSWLGGIIIGTMVGANMVLEE 171
SS A+QIGR IVTMMSTGVVLAVGFQLSGGDSQMN LIWYSWLGG+IIGTM+GANMVLEE
Sbjct: 123 SSAAVQIGRYIVTMMSTGVVLAVGFQLSGGDSQMNTLIWYSWLGGVIIGTMIGANMVLEE 182
Query: 172 HCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMA 231
HC AGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESV+ T+ ELEENLK G+M
Sbjct: 183 HCSAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVQETLRELEENLK-GLMV 241
Query: 232 AGGSSKKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQF 291
GSS K+L HAKV G C+VC+P DV KL+NF +NE GSIDIWINNAGTNKGF+PLLQF
Sbjct: 242 RSGSSNKSLAHAKVVGTTCNVCDPEDVHKLANFTLNELGSIDIWINNAGTNKGFRPLLQF 301
Query: 292 TNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKC 351
T+E+I QI+STNLVGS+LCTREAMRVMR+Q KGG IFNMDGAGSGGSSTPLTAVYGSTKC
Sbjct: 302 TDEDITQILSTNLVGSLLCTREAMRVMRNQAKGGQIFNMDGAGSGGSSTPLTAVYGSTKC 361
Query: 352 GLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLV 411
GLRQLQ+SL KE +RS VGVHTASPGMVLTDLLLSGST++NKQMFNIICELPETVARTLV
Sbjct: 362 GLRQLQSSLLKECRRSNVGVHTASPGMVLTDLLLSGSTVRNKQMFNIICELPETVARTLV 421
Query: 412 PRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWFDDQGRALYAAEADRIRNWAENRAR 471
PR+RVVKG+GKAINYLTPPRILLALVTAWLRRGRWFDDQGRALYAAEADRIRNWAENR R
Sbjct: 422 PRMRVVKGTGKAINYLTPPRILLALVTAWLRRGRWFDDQGRALYAAEADRIRNWAENRTR 481
Query: 472 FSFTDAMEMYTENTWVSVFSLSVVCAFIILSSTGSNTFPGT 512
FSFTDAMEMYTENTWVSVFSLSVVCAFIILS+T +NT PGT
Sbjct: 482 FSFTDAMEMYTENTWVSVFSLSVVCAFIILSTT-NNTLPGT 521
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357500769|ref|XP_003620673.1| Oxidoreductase [Medicago truncatula] gi|355495688|gb|AES76891.1| Oxidoreductase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 751 bits (1938), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/473 (76%), Positives = 416/473 (87%), Gaps = 8/473 (1%)
Query: 47 GLHMQPCRSFKTDDKGE-------NEAESELKLKKTSGFWSSLKDVIFRVNGPGSQSSDE 99
GL ++ CR+FK++D G+ N ++E+K+++ +GFWS+ ++V+ GS+ DE
Sbjct: 43 GLCLKKCRAFKSEDGGDVKEKKLRNLKKNEVKVQRENGFWSNFRNVLLGNFMMGSKLDDE 102
Query: 100 YCKAVAKVEKVFSSIAIQIGRCIVTMMSTGVVLAVGFQLSGGDSQMNALIWYSWLGGIII 159
Y +AV +V++V S IA+QIGR IVTMMSTGV+LA+GFQ+SGGDSQM+ALIWYSWLGG+II
Sbjct: 103 YRQAVVRVDEVLSKIAVQIGRYIVTMMSTGVILAIGFQMSGGDSQMDALIWYSWLGGVII 162
Query: 160 GTMVGANMVLEEHCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVT 219
GTM+GAN VLE++C+ GPRNVVITGSTRGLGKALAREFLLSGDRV+V SRS ESV+ TV
Sbjct: 163 GTMIGANWVLEDYCREGPRNVVITGSTRGLGKALAREFLLSGDRVIVTSRSPESVQATVK 222
Query: 220 ELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNA 279
ELEENLKEG+ A GSS L AKV GIACDVCE DVQ+L+NFAV+E G IDIWINNA
Sbjct: 223 ELEENLKEGIANAVGSSLTKLSQAKVVGIACDVCEANDVQRLANFAVSELGYIDIWINNA 282
Query: 280 GTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSS 339
GTNKGF+PLLQF++E+I+QIVSTNLVGSILCTREAMR+MR+Q K GHIFNMDGAGSGGSS
Sbjct: 283 GTNKGFRPLLQFSDEDIKQIVSTNLVGSILCTREAMRIMRNQTKPGHIFNMDGAGSGGSS 342
Query: 340 TPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNII 399
TPLTAVYGSTKCGLRQ SL E KRSKVGVHTASPGMVLT+LLLSGSTIQNKQMFNII
Sbjct: 343 TPLTAVYGSTKCGLRQFHGSLLTECKRSKVGVHTASPGMVLTELLLSGSTIQNKQMFNII 402
Query: 400 CELPETVARTLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWFDDQGRALYAAEA 459
CELPETVARTLVPR+RVVKG+GKAINYLTPPRILLALVTAWLRRGRWFDD+GRALY+AEA
Sbjct: 403 CELPETVARTLVPRMRVVKGTGKAINYLTPPRILLALVTAWLRRGRWFDDEGRALYSAEA 462
Query: 460 DRIRNWAENRARFSFTDAMEMYTENTWVSVFSLSVVCAFIILSSTGSNTFPGT 512
DR+RNWAENRARFSFTDAMEMYTENTW+SVFSLSVVCAFIILSST SN PGT
Sbjct: 463 DRLRNWAENRARFSFTDAMEMYTENTWLSVFSLSVVCAFIILSSTSSN-LPGT 514
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224142147|ref|XP_002324420.1| predicted protein [Populus trichocarpa] gi|222865854|gb|EEF02985.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 749 bits (1934), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/439 (85%), Positives = 411/439 (93%), Gaps = 3/439 (0%)
Query: 74 KTSGFWSSLKDVIFRVNGPGSQSSDEYCKAVAKVEKVFSSIAIQIGRCIVTMMSTGVVLA 133
K SGFW+SLK + V SQS++E+ +AVA++E+VFSS A+QIGR IVTMMSTGVVLA
Sbjct: 1 KGSGFWTSLKKAVSWVGTLPSQSNEEHREAVARLEEVFSSAALQIGRYIVTMMSTGVVLA 60
Query: 134 VGFQLSGGDSQMNALIWYSWLGGIIIGTMVGANMVLEEHCKAGPRNVVITGSTRGLGKAL 193
VGFQLSGGDSQMN LIWYSWLGGIIIGTM+GANMVL+EHC+AGPRNVVITGSTRGLGKAL
Sbjct: 61 VGFQLSGGDSQMNTLIWYSWLGGIIIGTMIGANMVLDEHCRAGPRNVVITGSTRGLGKAL 120
Query: 194 AREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253
AREFLLSGD VVVASRS ESV T+ ELEENLKEGM+ A S++ +L HAKV GIACDVC
Sbjct: 121 AREFLLSGDHVVVASRSPESVDTTIRELEENLKEGMITA--SNRTSLAHAKVVGIACDVC 178
Query: 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTRE 313
EP+DVQKL+NFAVNEFGSIDIWINNAGTNKGF+PLLQFT+E+I+QIVSTNLVGSILCT+E
Sbjct: 179 EPSDVQKLANFAVNEFGSIDIWINNAGTNKGFRPLLQFTDEDIKQIVSTNLVGSILCTQE 238
Query: 314 AMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHT 373
AMR+M +QPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASL KE KRSKVG+HT
Sbjct: 239 AMRMMMNQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLLKECKRSKVGIHT 298
Query: 374 ASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPRIRVVKGSGKAINYLTPPRIL 433
ASPGMVLTDLLLSGST++NKQMFNIICELPETVARTLVPR+RVVKG+GKAI+YLTPPRIL
Sbjct: 299 ASPGMVLTDLLLSGSTLKNKQMFNIICELPETVARTLVPRMRVVKGTGKAISYLTPPRIL 358
Query: 434 LALVTAWLRRGRWFDDQGRALYAAEADRIRNWAENRARFSFTDAMEMYTENTWVSVFSLS 493
LALVTAWLRRGRWFDDQGRALYAAEADR+RNWAENRA+FSFTDAMEMYTENTWVSVFSLS
Sbjct: 359 LALVTAWLRRGRWFDDQGRALYAAEADRLRNWAENRAQFSFTDAMEMYTENTWVSVFSLS 418
Query: 494 VVCAFIILSSTGSNTFPGT 512
VVCAFIILSSTGS TFPGT
Sbjct: 419 VVCAFIILSSTGS-TFPGT 436
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357128420|ref|XP_003565871.1| PREDICTED: probable chlorophyll(ide) b reductase NYC1, chloroplastic-like [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 719 bits (1855), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/465 (75%), Positives = 401/465 (86%), Gaps = 6/465 (1%)
Query: 53 CRSFKTDDKGENEAESELKLKK-TSGFWSSLKDVIFRVNGPGSQSSD----EYCKAVAKV 107
CR+FK + G++E S + +K G LK I + G S +++ +Y AV K
Sbjct: 33 CRAFKQETGGDDEKPSPTEARKRKKGPLYKLKAAIQGLAGSRSAAAEVYGGQYELAVEKA 92
Query: 108 EKVFSSIAIQIGRCIVTMMSTGVVLAVGFQLSGGDSQMNALIWYSWLGGIIIGTMVGANM 167
E++F S+A Q+GR ++TMMS+GVVL VGFQLSGGDSQMN LIWYSWLGG+IIGTM+GAN
Sbjct: 93 EEIFFSVATQLGRYVITMMSSGVVLGVGFQLSGGDSQMNTLIWYSWLGGVIIGTMIGANS 152
Query: 168 VLEEHCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKE 227
VLEEHCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRS +SV T++ELEEN++E
Sbjct: 153 VLEEHCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSPQSVLQTISELEENIQE 212
Query: 228 GMMAAGGSSKKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKP 287
G+ A ++ L+ AKV G +CDVC+P DV+KL NFAV+E GSIDIWINNAGTNKGF+P
Sbjct: 213 GLSVAKKKQREALLQAKVVGTSCDVCKPEDVKKLVNFAVDELGSIDIWINNAGTNKGFRP 272
Query: 288 LLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYG 347
L+ F++E+I QIVSTNLVGS+LCTREAM VM++Q KGGH+FNMDGAGSGGSSTPLTAVYG
Sbjct: 273 LVNFSDEDISQIVSTNLVGSLLCTREAMDVMQNQEKGGHVFNMDGAGSGGSSTPLTAVYG 332
Query: 348 STKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVA 407
STKCGLRQ QASL ESKRSKVGVHTASPGMVLTDLLLSGS++QNKQMFNIICELPETVA
Sbjct: 333 STKCGLRQFQASLMTESKRSKVGVHTASPGMVLTDLLLSGSSLQNKQMFNIICELPETVA 392
Query: 408 RTLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWFDDQGRALYAAEADRIRNWAE 467
RTLVPR+RVVKGSGKAINYLTPPRILLALVTAW+RRGRWFD++GRA+YAAEADRIRNWAE
Sbjct: 393 RTLVPRMRVVKGSGKAINYLTPPRILLALVTAWVRRGRWFDEEGRAVYAAEADRIRNWAE 452
Query: 468 NRARFSFTDAMEMYTENTWVSVFSLSVVCAFIILSSTGSNTFPGT 512
+R RFSFTDAMEMYTENTWVSVFSLSVVCAFIILSS+G FPGT
Sbjct: 453 SRTRFSFTDAMEMYTENTWVSVFSLSVVCAFIILSSSG-GPFPGT 496
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|115435420|ref|NP_001042468.1| Os01g0227100 [Oryza sativa Japonica Group] gi|75285786|sp|Q5N800.1|NYC1_ORYSJ RecName: Full=Probable chlorophyll(ide) b reductase NYC1, chloroplastic; AltName: Full=Protein NON-YELLOW COLORING 1; Short=OsNYC1; Flags: Precursor gi|56784128|dbj|BAD81513.1| unknown protein [Oryza sativa Japonica Group] gi|56784368|dbj|BAD82407.1| unknown protein [Oryza sativa Japonica Group] gi|113531999|dbj|BAF04382.1| Os01g0227100 [Oryza sativa Japonica Group] gi|134254413|dbj|BAF49740.1| short-chain dehydrogenase/reductase NYC1 [Oryza sativa Japonica Group] gi|215687172|dbj|BAG90942.1| unnamed protein product [Oryza sativa Japonica Group] gi|222618022|gb|EEE54154.1| hypothetical protein OsJ_00960 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 718 bits (1853), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/493 (72%), Positives = 407/493 (82%), Gaps = 21/493 (4%)
Query: 40 GAYKRRYGLHMQP--------CRSFKTD-DKGENEAESELKLKKTS-------GFWSSLK 83
G +R LH +P CR+FK + D G EA S T+ G LK
Sbjct: 13 GRLRRSPELHARPYHRPSLLRCRAFKQEADNGGEEASSSPPPPTTAEARRRRKGPLYKLK 72
Query: 84 DVIFRVNGPGSQSSD----EYCKAVAKVEKVFSSIAIQIGRCIVTMMSTGVVLAVGFQLS 139
I + G S +++ EY +AV K E++F S+A Q+GR ++TMMS+GVVL VGFQLS
Sbjct: 73 AAIQGLAGSRSAAAEAYGGEYQRAVEKAEEIFFSVATQVGRYVITMMSSGVVLGVGFQLS 132
Query: 140 GGDSQMNALIWYSWLGGIIIGTMVGANMVLEEHCKAGPRNVVITGSTRGLGKALAREFLL 199
GGDSQMN LIWYSWLGG+IIGTM+GAN VLEEHCKAGPRNVVITGSTRGLGKALAREFLL
Sbjct: 133 GGDSQMNTLIWYSWLGGVIIGTMIGANSVLEEHCKAGPRNVVITGSTRGLGKALAREFLL 192
Query: 200 SGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPADVQ 259
SGDRVV+ASRS ESV T+ ELEEN++EG+ A ++ L+HAKV G +CDVC+P DV+
Sbjct: 193 SGDRVVIASRSPESVLQTINELEENIQEGLSVAKKKQREILLHAKVVGTSCDVCKPEDVK 252
Query: 260 KLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMR 319
KL NFA +E GSIDIWINNAGTNKGF+PL+ F++E+I QIVSTNLVGS+LCTREAM VM+
Sbjct: 253 KLVNFAKDELGSIDIWINNAGTNKGFRPLVNFSDEDISQIVSTNLVGSLLCTREAMNVMQ 312
Query: 320 DQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMV 379
Q KGGH+FNMDGAGSGGSSTPLTAVYGSTKCGLRQ QASL KES+RSKVGVHTASPGMV
Sbjct: 313 HQQKGGHVFNMDGAGSGGSSTPLTAVYGSTKCGLRQFQASLLKESRRSKVGVHTASPGMV 372
Query: 380 LTDLLLSGSTIQNKQMFNIICELPETVARTLVPRIRVVKGSGKAINYLTPPRILLALVTA 439
LTDLLLSGS+++NKQMFN+ICELPETVARTLVPR+RVVKGSGKAINYLTPPRILLALVTA
Sbjct: 373 LTDLLLSGSSLRNKQMFNLICELPETVARTLVPRMRVVKGSGKAINYLTPPRILLALVTA 432
Query: 440 WLRRGRWFDDQGRALYAAEADRIRNWAENRARFSFTDAMEMYTENTWVSVFSLSVVCAFI 499
W+RRGRWFD++GRA+YAAEADRIRNWAE+RARFSFTDAMEMYTENTWVSVFSLSVVCAFI
Sbjct: 433 WVRRGRWFDEEGRAVYAAEADRIRNWAESRARFSFTDAMEMYTENTWVSVFSLSVVCAFI 492
Query: 500 ILSSTGSNTFPGT 512
ILSS+G PGT
Sbjct: 493 ILSSSG-GPLPGT 504
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 512 | ||||||
| UNIPROTKB|Q5N800 | 504 | NYC1 "Probable chlorophyll(ide | 0.896 | 0.910 | 0.720 | 3.5e-178 | |
| TAIR|locus:2119330 | 496 | NYC1 "NON-YELLOW COLORING 1" [ | 0.962 | 0.993 | 0.683 | 7.5e-176 | |
| UNIPROTKB|Q84ST4 | 343 | NOL "Chlorophyll(ide) b reduct | 0.482 | 0.720 | 0.423 | 1.3e-45 | |
| TAIR|locus:2175254 | 348 | NOL "NYC1-like" [Arabidopsis t | 0.445 | 0.655 | 0.438 | 5e-44 | |
| TIGR_CMR|CHY_1306 | 249 | CHY_1306 "oxidoreductase, shor | 0.378 | 0.779 | 0.298 | 7.3e-16 | |
| UNIPROTKB|F1RIX8 | 238 | CBR4 "Uncharacterized protein" | 0.261 | 0.563 | 0.323 | 4.3e-15 | |
| UNIPROTKB|Q8N4T8 | 237 | CBR4 "Carbonyl reductase famil | 0.296 | 0.641 | 0.339 | 1.4e-14 | |
| TIGR_CMR|CHY_1447 | 247 | CHY_1447 "3-oxoacyl-(acyl-carr | 0.359 | 0.744 | 0.282 | 1.9e-14 | |
| ZFIN|ZDB-GENE-040426-1796 | 237 | cbr4 "carbonyl reductase 4" [D | 0.289 | 0.624 | 0.309 | 9.2e-14 | |
| TIGR_CMR|DET_1277 | 247 | DET_1277 "3-oxoacyl-acyl carri | 0.279 | 0.578 | 0.287 | 1.4e-13 |
| UNIPROTKB|Q5N800 NYC1 "Probable chlorophyll(ide) b reductase NYC1, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1730 (614.0 bits), Expect = 3.5e-178, P = 3.5e-178
Identities = 340/472 (72%), Positives = 390/472 (82%)
Query: 53 CRSFKTD-DKGENEAESELKLKKTSGFWSSLKDVIFR----VNG-PGSQSS------DEY 100
CR+FK + D G EA S T+ K +++ + G GS+S+ EY
Sbjct: 34 CRAFKQEADNGGEEASSSPPPPTTAEARRRRKGPLYKLKAAIQGLAGSRSAAAEAYGGEY 93
Query: 101 CKAVAKVEKVFSSIAIQIGRCIVTMMSTGVVLAVGFQLSGGDSQMNALIWYSWLGGIIIG 160
+AV K E++F S+A Q+GR ++TMMS+GVVL VGFQLSGGDSQMN LIWYSWLGG+IIG
Sbjct: 94 QRAVEKAEEIFFSVATQVGRYVITMMSSGVVLGVGFQLSGGDSQMNTLIWYSWLGGVIIG 153
Query: 161 TMVGANMVLEEHCKAGPRNVVITGSTRGLGKALAREFLLSGDXXXXXXXXXXXXXMTVTE 220
TM+GAN VLEEHCKAGPRNVVITGSTRGLGKALAREFLLSGD T+ E
Sbjct: 154 TMIGANSVLEEHCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVIASRSPESVLQTINE 213
Query: 221 LEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAG 280
LEEN++EG+ A ++ L+HAKV G +CDVC+P DV+KL NFA +E GSIDIWINNAG
Sbjct: 214 LEENIQEGLSVAKKKQREILLHAKVVGTSCDVCKPEDVKKLVNFAKDELGSIDIWINNAG 273
Query: 281 TNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSST 340
TNKGF+PL+ F++E+I QIVSTNLVGS+LCTREAM VM+ Q KGGH+FNMDGAGSGGSST
Sbjct: 274 TNKGFRPLVNFSDEDISQIVSTNLVGSLLCTREAMNVMQHQQKGGHVFNMDGAGSGGSST 333
Query: 341 PLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIIC 400
PLTAVYGSTKCGLRQ QASL KES+RSKVGVHTASPGMVLTDLLLSGS+++NKQMFN+IC
Sbjct: 334 PLTAVYGSTKCGLRQFQASLLKESRRSKVGVHTASPGMVLTDLLLSGSSLRNKQMFNLIC 393
Query: 401 ELPETVARTLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWFDDQGRALYAAEAD 460
ELPETVARTLVPR+RVVKGSGKAINYLTPPRILLALVTAW+RRGRWFD++GRA+YAAEAD
Sbjct: 394 ELPETVARTLVPRMRVVKGSGKAINYLTPPRILLALVTAWVRRGRWFDEEGRAVYAAEAD 453
Query: 461 RIRNWAENRARFSFTDAMEMYTENTWVSVFSLSVVCAFIILSSTGSNTFPGT 512
RIRNWAE+RARFSFTDAMEMYTENTWVSVFSLSVVCAFIILSS+G PGT
Sbjct: 454 RIRNWAESRARFSFTDAMEMYTENTWVSVFSLSVVCAFIILSSSGG-PLPGT 504
|
|
| TAIR|locus:2119330 NYC1 "NON-YELLOW COLORING 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1708 (606.3 bits), Expect = 7.5e-176, P = 7.5e-176
Identities = 348/509 (68%), Positives = 394/509 (77%)
Query: 5 TLTKPHISLQTL-HYYCFKDQQRGPCLRPASYRSGLGAYKRRYGLHMQPCRSFKTDDKGE 63
TLTK + Q L H F+D P S L +R +++ C + K E
Sbjct: 3 TLTKIQVYPQVLEHRLFFRD--------PIRVGSRLTCRERSNRVYVHRC-----EKKVE 49
Query: 64 NEAESELKLKKTSGFWSSLKDVIFRVNGPGSQSSDEYCKAVAKVEKVFSSIAIQIGRCIV 123
+ + E K K +G W SLK + G S DEY + V +E VFSS+A+QI R IV
Sbjct: 50 RKRKVE-KFKG-NGSWDSLKSGFLGFSKLGFLSKDEYNQKVENLEMVFSSVAVQIARYIV 107
Query: 124 TMMSTGVVLAVGFQLSGGDSQMNALIWYSWLGGIIIGTMVGANMVLEEHCKAGPRNVVIT 183
TM STG +L +GFQLSGGDS MN+L+WYSWLGGIIIGTM GANMVLE+H +AGPRNVVIT
Sbjct: 108 TMTSTGAILLIGFQLSGGDSSMNSLVWYSWLGGIIIGTMTGANMVLEDHYRAGPRNVVIT 167
Query: 184 GSTRGLGKALAREFLLSGDXXXXXXXXXXXXXMTVTELEENLKEGMMAAGGSSKKNLVHA 243
GSTRGLGKALAREFLLSGD MTV ELE+NLKE M A S++K L A
Sbjct: 168 GSTRGLGKALAREFLLSGDRVIVTSRSSESVDMTVKELEQNLKEIMSNASESARKKLSDA 227
Query: 244 KVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTN 303
KV GIACDVC+P DV+KLSNFAV E GSI+IWINNAGTNKGF+PLL+FT E+I QIVSTN
Sbjct: 228 KVVGIACDVCKPEDVEKLSNFAVKELGSINIWINNAGTNKGFRPLLEFTEEDITQIVSTN 287
Query: 304 LVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKE 363
L+GSILCTR AM VM Q GGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQ S+ KE
Sbjct: 288 LIGSILCTRGAMDVMSRQHSGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQFHGSIVKE 347
Query: 364 SKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPRIRVVKGSGKA 423
S+++ VG+HTASPGMVLT+LLLSGS+I+NKQMFNIICELPETVARTLVPR+RVVKGSGKA
Sbjct: 348 SQKTNVGLHTASPGMVLTELLLSGSSIKNKQMFNIICELPETVARTLVPRMRVVKGSGKA 407
Query: 424 INYLTPPRILLALVTAWLRRGRWFDDQGRALYAAEADRIRNWAENRARFSFTDAMEMYTE 483
+NYLTPPRILLA+VT+WLRRGRWFDDQGRALYAAEADR+RNWAENR R S TDAMEMYTE
Sbjct: 408 VNYLTPPRILLAIVTSWLRRGRWFDDQGRALYAAEADRLRNWAENRTRLSLTDAMEMYTE 467
Query: 484 NTWVSVFSLSVVCAFIILSSTGSNTFPGT 512
NTWVSVFSLSVVCAFIIL ST ++FPGT
Sbjct: 468 NTWVSVFSLSVVCAFIILQSTTPSSFPGT 496
|
|
| UNIPROTKB|Q84ST4 NOL "Chlorophyll(ide) b reductase NOL, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 479 (173.7 bits), Expect = 1.3e-45, P = 1.3e-45
Identities = 113/267 (42%), Positives = 154/267 (57%)
Query: 156 GIIIGTMVGANMVLEEHCKAGPRNVVITGSTRGLGKALAREFLLSGDXXXXXXXXXXXXX 215
GI + G V P NV+ITGST+G+G ALA+EFL +GD
Sbjct: 52 GIRAEAVPGGGGVARRAAMVPPYNVLITGSTKGIGYALAKEFLKAGDNVVICSRSAERVE 111
Query: 216 MTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIW 275
VT+L KK V GI CDV E DV+ L +FA ++ IDIW
Sbjct: 112 SAVTDL---------------KKEFGEQHVWGIVCDVREGKDVKALVDFARDKMKYIDIW 156
Query: 276 INNAGTNK-GFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAG 334
INNAG+N +KPL++ ++E + ++++TN +G ++C REA+ +MR+QP+GGHIFN+DGAG
Sbjct: 157 INNAGSNAYSYKPLVETSDEALMEVITTNTLGLMICCREAINMMRNQPRGGHIFNIDGAG 216
Query: 335 SGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVG---VHTASPGMVLTDLLLSGSTIQ 391
S G TP A YG+TK + L SL E + ++V VH SPGMV TDLL+SG+T +
Sbjct: 217 SDGRPTPRFAAYGATKRSVVHLTKSLQAELQMNEVNNVMVHNLSPGMVTTDLLMSGATTK 276
Query: 392 NKQMF-NIICELPETVARTLVPRIRVV 417
+ F NI+ E VA LVP IR +
Sbjct: 277 QAKFFINILAEPANVVADYLVPNIRAI 303
|
|
| TAIR|locus:2175254 NOL "NYC1-like" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 464 (168.4 bits), Expect = 5.0e-44, P = 5.0e-44
Identities = 110/251 (43%), Positives = 146/251 (58%)
Query: 177 PRNVVITGSTRGLGKALAREFLLSGDXXXXXXXXXXXXXMTVTELEENLKEGMMAAGGSS 236
P N++ITGST+G+G ALAREFL +GD V L+E E
Sbjct: 79 PYNILITGSTKGIGYALAREFLKAGDNVVICSRSAERVETAVQSLKEEFGE--------- 129
Query: 237 KKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNK-GFKPLLQFTNEE 295
H V G CDV E DV++L ++ IDIWINNAG+N FKPL + ++E+
Sbjct: 130 -----H--VWGTKCDVTEGKDVRELVAYSQKNLKYIDIWINNAGSNAYSFKPLAEASDED 182
Query: 296 IEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGL-- 353
+ ++V TN +G +LC REAM +M Q +GGHIFN+DGAGS G TP A YG+TK +
Sbjct: 183 LIEVVKTNTLGLMLCCREAMNMMLTQSRGGHIFNIDGAGSDGRPTPRFAAYGATKRSVVH 242
Query: 354 --RQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMF-NIICELPETVARTL 410
+ LQA L + ++ V VH SPGMV TDLL+SG+T + + F N++ E E VA L
Sbjct: 243 LTKSLQAELQMQDVKNVV-VHNLSPGMVTTDLLMSGATTKQAKFFINVLAEPAEVVAEYL 301
Query: 411 VPRIRVVKGSG 421
VP IR + SG
Sbjct: 302 VPNIRAIPASG 312
|
|
| TIGR_CMR|CHY_1306 CHY_1306 "oxidoreductase, short chain dehydrogenase/reductase family" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 186 (70.5 bits), Expect = 7.3e-16, Sum P(2) = 7.3e-16
Identities = 62/208 (29%), Positives = 101/208 (48%)
Query: 224 NLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNK 283
N +EG AA +K L +V I CDV + AD++KL + +G IDI +N AG N
Sbjct: 39 NKEEGEKAALQLREKGL---EVYSIPCDVGKVADIKKLVSEVYGRYGRIDILVNCAGVNV 95
Query: 284 GFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLT 343
KP+ ++T E+ +V NL G+ EA + M Q K G I N+ P
Sbjct: 96 R-KPIEEYTEEDWNYMVDINLKGTFFACIEAGKHMIAQ-KEGVIVNLASI-QAEEVLPER 152
Query: 344 AVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELP 403
+Y +TK G++QL +L E + + V+ SP + T+++ +Q+ N+I
Sbjct: 153 GIYATTKGGVKQLTKALAVEWAKYNIRVNAVSPAFIKTEMV--EKVLQDPYWGNLI---- 206
Query: 404 ETVARTLVPRIRVVKGSGKAINYLTPPR 431
+ +T + R + +AI +L P+
Sbjct: 207 --INKTPMRRPGTPEEVAEAILFLVSPK 232
|
|
| UNIPROTKB|F1RIX8 CBR4 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 177 (67.4 bits), Expect = 4.3e-15, Sum P(2) = 4.3e-15
Identities = 44/136 (32%), Positives = 73/136 (53%)
Query: 248 IACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGS 307
++CDV + DVQ G ++ +N AG N L++ + E++ + TNL+GS
Sbjct: 53 LSCDVAKEQDVQSTFEEIEKNLGPVNFLVNAAGINSRDNLLVRTSTEDMLCQLQTNLLGS 112
Query: 308 ILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRS 367
+L + A++ M Q +GG I N+ G+ G P +VY ++K GL +L KE +
Sbjct: 113 MLTCKAAVKTMIKQ-QGGSIVNI-GSVVGLKGNPGQSVYSASKGGLVGFSRALAKEVAKK 170
Query: 368 KVGVHTASPGMVLTDL 383
K+ V+ +PG V TD+
Sbjct: 171 KIRVNVVAPGFVHTDM 186
|
|
| UNIPROTKB|Q8N4T8 CBR4 "Carbonyl reductase family member 4" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 177 (67.4 bits), Expect = 1.4e-14, Sum P(2) = 1.4e-14
Identities = 56/165 (33%), Positives = 83/165 (50%)
Query: 221 LEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAG 280
+ NL EG AA G + H +CDV + DVQ G ++ +N AG
Sbjct: 32 IARNL-EGAKAAAGDLGGD--HL---AFSCDVAKEHDVQNTFEELEKHLGRVNFLVNAAG 85
Query: 281 TNK-GFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG-AGSGGS 338
N+ G L++ E++ + TNL+GS+L + AMR M Q +GG I N+ G G+
Sbjct: 86 INRDGL--LVRTKTEDMVSQLHTNLLGSMLTCKAAMRTMIQQ-QGGSIVNVGSIVGLKGN 142
Query: 339 STPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDL 383
S +VY ++K GL +L KE R K+ V+ +PG V TD+
Sbjct: 143 SGQ--SVYSASKGGLVGFSRALAKEVARKKIRVNVVAPGFVHTDM 185
|
|
| TIGR_CMR|CHY_1447 CHY_1447 "3-oxoacyl-(acyl-carrier-protein) reductase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 193 (73.0 bits), Expect = 1.9e-14, P = 1.9e-14
Identities = 58/205 (28%), Positives = 103/205 (50%)
Query: 180 VVITGSTRGLGKALAREFLLSGDXXXXXXXXXXXXXMTVTELEENLKEGMMAAGGSSKKN 239
V++TG++RG+G+ +A F L+G + ++L+E L+ SK
Sbjct: 8 VLVTGASRGIGRKIAERFALAG---AKVGINYAHNDLLASQLKEELE---------SKG- 54
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQI 299
A+V + DV + +V+++ V FG IDI +NNAG K K LL+ + ++ + +
Sbjct: 55 ---AEVLLVKGDVSQKEEVERIFKELVTTFGKIDIVVNNAGITKD-KLLLRMSYDDFDSV 110
Query: 300 VSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA-GSGGSSTPLTAVYGSTKCGLRQLQA 358
+ TNL + L TREA ++M Q + G I N+ G G++ A Y ++K +
Sbjct: 111 IKTNLYSTFLVTREAAKIMLKQ-RFGRIINISSVVGIKGNAGQ--ANYAASKAAIIGFTK 167
Query: 359 SLFKESKRSKVGVHTASPGMVLTDL 383
++ E + V+ +PG + TD+
Sbjct: 168 AVALELASRGITVNAVAPGYIKTDM 192
|
|
| ZFIN|ZDB-GENE-040426-1796 cbr4 "carbonyl reductase 4" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 173 (66.0 bits), Expect = 9.2e-14, Sum P(2) = 9.2e-14
Identities = 47/152 (30%), Positives = 78/152 (51%)
Query: 232 AGGSSKKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQF 291
A S+ ++L G++CDV + +VQK G++ +N AG N+ LL+
Sbjct: 38 AAQSTAQSLPGENHLGLSCDVSKEEEVQKAFETINKTCGTVGFLVNAAGINRDAL-LLRS 96
Query: 292 TNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKC 351
+E++ ++ TNL+GS+L + A+R M GG I N+ G+ G VY ++K
Sbjct: 97 KSEDMLSVLHTNLLGSMLTCKAAVRNMLSH--GGAIVNI-GSVVGVKGNAGQCVYSASKA 153
Query: 352 GLRQLQASLFKESKRSKVGVHTASPGMVLTDL 383
GL SL KE + V+ +PG++ TD+
Sbjct: 154 GLEGFTRSLAKEVASRNIRVNLVAPGLIHTDM 185
|
|
| TIGR_CMR|DET_1277 DET_1277 "3-oxoacyl-acyl carrier protein reductase" [Dehalococcoides ethenogenes 195 (taxid:243164)] | Back alignment and assigned GO terms |
|---|
Score = 169 (64.5 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 42/146 (28%), Positives = 71/146 (48%)
Query: 248 IACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGS 307
+ DV + + V L A FG +DI +NNAG + + ++ + E+ + ++ TNL
Sbjct: 59 VQADVSQSSGVDALFKAAQEAFGGVDILVNNAGITRD-QLTMRLSEEDWDSVIQTNLKSV 117
Query: 308 ILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRS 367
LC++ A+R M + G I N+ G P A Y + K G+ SL KE
Sbjct: 118 FLCSKAALRQMLKN-RWGRIINLSSI-VGLKGNPGQANYAAAKAGILGFSCSLAKEVASR 175
Query: 368 KVGVHTASPGMVLTDLLLSGSTIQNK 393
+ V++ +PG + TD+ + S Q +
Sbjct: 176 NITVNSIAPGFIETDMTAALSEEQRQ 201
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q5N800 | NYC1_ORYSJ | 1, ., 1, ., 1, ., 2, 9, 4 | 0.7221 | 0.9218 | 0.9365 | yes | no |
| Q93ZA0 | NYC1_ARATH | 1, ., 1, ., 1, ., 2, 9, 4 | 0.6986 | 0.9589 | 0.9899 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 512 | |||
| cd05233 | 234 | cd05233, SDR_c, classical (c) SDRs | 8e-50 | |
| COG1028 | 251 | COG1028, FabG, Dehydrogenases with different speci | 1e-35 | |
| PRK07231 | 251 | PRK07231, fabG, 3-ketoacyl-(acyl-carrier-protein) | 1e-34 | |
| COG0300 | 265 | COG0300, DltE, Short-chain dehydrogenases of vario | 7e-33 | |
| PRK05557 | 248 | PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) | 3e-30 | |
| PRK05565 | 247 | PRK05565, fabG, 3-ketoacyl-(acyl-carrier-protein) | 8e-29 | |
| COG4221 | 246 | COG4221, COG4221, Short-chain alcohol dehydrogenas | 1e-28 | |
| PRK12429 | 258 | PRK12429, PRK12429, 3-hydroxybutyrate dehydrogenas | 2e-28 | |
| PRK05653 | 246 | PRK05653, fabG, 3-ketoacyl-(acyl-carrier-protein) | 8e-28 | |
| cd05374 | 248 | cd05374, 17beta-HSD-like_SDR_c, 17beta hydroxyster | 1e-27 | |
| PRK07856 | 252 | PRK07856, PRK07856, short chain dehydrogenase; Pro | 2e-27 | |
| cd05358 | 253 | cd05358, GlcDH_SDR_c, glucose 1 dehydrogenase (Glc | 4e-27 | |
| cd05362 | 243 | cd05362, THN_reductase-like_SDR_c, tetrahydroxynap | 1e-26 | |
| cd05359 | 242 | cd05359, ChcA_like_SDR_c, 1-cyclohexenylcarbonyl_c | 2e-26 | |
| PRK12829 | 264 | PRK12829, PRK12829, short chain dehydrogenase; Pro | 2e-26 | |
| TIGR01830 | 239 | TIGR01830, 3oxo_ACP_reduc, 3-oxoacyl-(acyl-carrier | 1e-25 | |
| cd05333 | 240 | cd05333, BKR_SDR_c, beta-Keto acyl carrier protein | 6e-25 | |
| PRK07109 | 334 | PRK07109, PRK07109, short chain dehydrogenase; Pro | 7e-25 | |
| PRK12825 | 249 | PRK12825, fabG, 3-ketoacyl-(acyl-carrier-protein) | 8e-25 | |
| cd05352 | 252 | cd05352, MDH-like_SDR_c, mannitol dehydrogenase (M | 8e-25 | |
| cd08944 | 246 | cd08944, SDR_c12, classical (c) SDR, subgroup 12 | 1e-24 | |
| PRK07326 | 237 | PRK07326, PRK07326, short chain dehydrogenase; Pro | 4e-24 | |
| cd08939 | 239 | cd08939, KDSR-like_SDR_c, 3-ketodihydrosphingosine | 5e-24 | |
| cd05360 | 233 | cd05360, SDR_c3, classical (c) SDR, subgroup 3 | 6e-24 | |
| cd05329 | 251 | cd05329, TR_SDR_c, tropinone reductase-I and II (T | 7e-24 | |
| PRK12939 | 250 | PRK12939, PRK12939, short chain dehydrogenase; Pro | 1e-23 | |
| cd05346 | 249 | cd05346, SDR_c5, classical (c) SDR, subgroup 5 | 2e-23 | |
| PRK12826 | 251 | PRK12826, PRK12826, 3-ketoacyl-(acyl-carrier-prote | 5e-23 | |
| TIGR01963 | 255 | TIGR01963, PHB_DH, 3-hydroxybutyrate dehydrogenase | 7e-23 | |
| cd08929 | 226 | cd08929, SDR_c4, classical (c) SDR, subgroup 4 | 9e-23 | |
| PRK07666 | 239 | PRK07666, fabG, 3-ketoacyl-(acyl-carrier-protein) | 1e-22 | |
| cd05366 | 257 | cd05366, meso-BDH-like_SDR_c, meso-2,3-butanediol | 1e-22 | |
| cd05326 | 249 | cd05326, secoisolariciresinol-DH_like_SDR_c, secoi | 2e-22 | |
| PRK08936 | 261 | PRK08936, PRK08936, glucose-1-dehydrogenase; Provi | 3e-22 | |
| cd05324 | 225 | cd05324, carb_red_PTCR-like_SDR_c, Porcine testicu | 4e-22 | |
| PRK06484 | 520 | PRK06484, PRK06484, short chain dehydrogenase; Val | 5e-22 | |
| cd08932 | 223 | cd08932, HetN_like_SDR_c, HetN oxidoreductase-like | 7e-22 | |
| PRK06077 | 252 | PRK06077, fabG, 3-ketoacyl-(acyl-carrier-protein) | 8e-22 | |
| cd05369 | 249 | cd05369, TER_DECR_SDR_a, Trans-2-enoyl-CoA reducta | 9e-22 | |
| cd05347 | 248 | cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogena | 2e-21 | |
| PRK05867 | 253 | PRK05867, PRK05867, short chain dehydrogenase; Pro | 3e-21 | |
| PRK08263 | 275 | PRK08263, PRK08263, short chain dehydrogenase; Pro | 3e-21 | |
| PRK07831 | 262 | PRK07831, PRK07831, short chain dehydrogenase; Pro | 7e-21 | |
| cd05356 | 239 | cd05356, 17beta-HSD1_like_SDR_c, 17-beta-hydroxyst | 8e-21 | |
| PRK06463 | 255 | PRK06463, fabG, 3-ketoacyl-(acyl-carrier-protein) | 8e-21 | |
| PRK06484 | 520 | PRK06484, PRK06484, short chain dehydrogenase; Val | 1e-20 | |
| PRK07067 | 257 | PRK07067, PRK07067, sorbitol dehydrogenase; Provis | 3e-20 | |
| cd05367 | 241 | cd05367, SPR-like_SDR_c, sepiapterin reductase (SP | 4e-20 | |
| PRK06124 | 256 | PRK06124, PRK06124, gluconate 5-dehydrogenase; Pro | 7e-20 | |
| cd05344 | 253 | cd05344, BKR_like_SDR_like, putative beta-ketoacyl | 8e-20 | |
| PRK07774 | 250 | PRK07774, PRK07774, short chain dehydrogenase; Pro | 8e-20 | |
| PRK06172 | 253 | PRK06172, PRK06172, short chain dehydrogenase; Pro | 1e-19 | |
| cd05363 | 254 | cd05363, SDH_SDR_c, Sorbitol dehydrogenase (SDH), | 1e-19 | |
| PRK09242 | 257 | PRK09242, PRK09242, tropinone reductase; Provision | 2e-19 | |
| cd08945 | 258 | cd08945, PKR_SDR_c, Polyketide ketoreductase, clas | 2e-19 | |
| cd05350 | 239 | cd05350, SDR_c6, classical (c) SDR, subgroup 6 | 2e-19 | |
| PRK12937 | 245 | PRK12937, PRK12937, short chain dehydrogenase; Pro | 4e-19 | |
| PRK13394 | 262 | PRK13394, PRK13394, 3-hydroxybutyrate dehydrogenas | 4e-19 | |
| cd05323 | 244 | cd05323, ADH_SDR_c_like, insect type alcohol dehyd | 8e-19 | |
| PRK05855 | 582 | PRK05855, PRK05855, short chain dehydrogenase; Val | 1e-18 | |
| pfam00106 | 167 | pfam00106, adh_short, short chain dehydrogenase | 1e-18 | |
| cd08943 | 250 | cd08943, R1PA_ADH_SDR_c, rhamnulose-1-phosphate al | 2e-18 | |
| PRK12384 | 259 | PRK12384, PRK12384, sorbitol-6-phosphate dehydroge | 3e-18 | |
| cd08937 | 256 | cd08937, DHB_DH-like_SDR_c, 1,6-dihydroxycyclohexa | 4e-18 | |
| cd08935 | 271 | cd08935, mannonate_red_SDR_c, putative D-mannonate | 4e-18 | |
| cd05343 | 250 | cd05343, Mgc4172-like_SDR_c, human Mgc4172-like, c | 6e-18 | |
| PRK09072 | 263 | PRK09072, PRK09072, short chain dehydrogenase; Pro | 7e-18 | |
| cd05341 | 247 | cd05341, 3beta-17beta-HSD_like_SDR_c, 3beta17beta | 9e-18 | |
| PRK08217 | 253 | PRK08217, fabG, 3-ketoacyl-(acyl-carrier-protein) | 1e-17 | |
| cd05373 | 238 | cd05373, SDR_c10, classical (c) SDR, subgroup 10 | 1e-17 | |
| cd08933 | 261 | cd08933, RDH_SDR_c, retinal dehydrogenase-like, cl | 1e-17 | |
| cd05339 | 243 | cd05339, 17beta-HSDXI-like_SDR_c, human 17-beta-hy | 1e-17 | |
| cd05337 | 255 | cd05337, BKR_1_SDR_c, putative beta-ketoacyl acyl | 2e-17 | |
| cd08930 | 250 | cd08930, SDR_c8, classical (c) SDR, subgroup 8 | 2e-17 | |
| PRK06482 | 276 | PRK06482, PRK06482, short chain dehydrogenase; Pro | 2e-17 | |
| cd05332 | 257 | cd05332, 11beta-HSD1_like_SDR_c, 11beta-hydroxyste | 2e-17 | |
| PRK06841 | 255 | PRK06841, PRK06841, short chain dehydrogenase; Pro | 4e-17 | |
| cd05365 | 242 | cd05365, 7_alpha_HSDH_SDR_c, 7 alpha-hydroxysteroi | 4e-17 | |
| cd08934 | 243 | cd08934, CAD_SDR_c, clavulanic acid dehydrogenase | 6e-17 | |
| cd05370 | 228 | cd05370, SDR_c2, classical (c) SDR, subgroup 2 | 7e-17 | |
| TIGR02415 | 254 | TIGR02415, 23BDH, acetoin reductases | 8e-17 | |
| PRK07825 | 273 | PRK07825, PRK07825, short chain dehydrogenase; Pro | 1e-16 | |
| PRK06181 | 263 | PRK06181, PRK06181, short chain dehydrogenase; Pro | 1e-16 | |
| cd05338 | 246 | cd05338, DHRS1_HSDL2-like_SDR_c, human dehydrogena | 2e-16 | |
| PRK08324 | 681 | PRK08324, PRK08324, short chain dehydrogenase; Val | 2e-16 | |
| PRK06123 | 248 | PRK06123, PRK06123, short chain dehydrogenase; Pro | 2e-16 | |
| PRK07063 | 260 | PRK07063, PRK07063, short chain dehydrogenase; Pro | 3e-16 | |
| PRK06139 | 330 | PRK06139, PRK06139, short chain dehydrogenase; Pro | 5e-16 | |
| cd05325 | 233 | cd05325, carb_red_sniffer_like_SDR_c, carbonyl red | 6e-16 | |
| PRK06947 | 248 | PRK06947, PRK06947, glucose-1-dehydrogenase; Provi | 8e-16 | |
| cd05327 | 269 | cd05327, retinol-DH_like_SDR_c_like, retinol dehyd | 8e-16 | |
| PRK06171 | 266 | PRK06171, PRK06171, sorbitol-6-phosphate 2-dehydro | 9e-16 | |
| cd08931 | 227 | cd08931, SDR_c9, classical (c) SDR, subgroup 9 | 2e-15 | |
| PRK07478 | 254 | PRK07478, PRK07478, short chain dehydrogenase; Pro | 2e-15 | |
| PRK07035 | 252 | PRK07035, PRK07035, short chain dehydrogenase; Pro | 2e-15 | |
| cd05345 | 248 | cd05345, BKR_3_SDR_c, putative beta-ketoacyl acyl | 2e-15 | |
| PRK12824 | 245 | PRK12824, PRK12824, acetoacetyl-CoA reductase; Pro | 3e-15 | |
| PRK12827 | 249 | PRK12827, PRK12827, short chain dehydrogenase; Pro | 3e-15 | |
| PRK08063 | 250 | PRK08063, PRK08063, enoyl-(acyl carrier protein) r | 5e-15 | |
| PRK08277 | 278 | PRK08277, PRK08277, D-mannonate oxidoreductase; Pr | 5e-15 | |
| PRK12823 | 260 | PRK12823, benD, 1,6-dihydroxycyclohexa-2,4-diene-1 | 6e-15 | |
| cd08936 | 256 | cd08936, CR_SDR_c, Porcine peroxisomal carbonyl re | 8e-15 | |
| PRK07814 | 263 | PRK07814, PRK07814, short chain dehydrogenase; Pro | 8e-15 | |
| PRK05650 | 270 | PRK05650, PRK05650, short chain dehydrogenase; Pro | 9e-15 | |
| PRK08213 | 259 | PRK08213, PRK08213, gluconate 5-dehydrogenase; Pro | 1e-14 | |
| PRK08589 | 272 | PRK08589, PRK08589, short chain dehydrogenase; Val | 2e-14 | |
| PRK06180 | 277 | PRK06180, PRK06180, short chain dehydrogenase; Pro | 4e-14 | |
| cd08940 | 258 | cd08940, HBDH_SDR_c, d-3-hydroxybutyrate dehydroge | 4e-14 | |
| COG3967 | 245 | COG3967, DltE, Short-chain dehydrogenase involved | 4e-14 | |
| TIGR03206 | 250 | TIGR03206, benzo_BadH, 2-hydroxycyclohexanecarboxy | 5e-14 | |
| cd05364 | 253 | cd05364, SDR_c11, classical (c) SDR, subgroup 11 | 6e-14 | |
| cd05353 | 250 | cd05353, hydroxyacyl-CoA-like_DH_SDR_c-like, (3R)- | 7e-14 | |
| PRK12935 | 247 | PRK12935, PRK12935, acetoacetyl-CoA reductase; Pro | 7e-14 | |
| PRK07060 | 245 | PRK07060, PRK07060, short chain dehydrogenase; Pro | 1e-13 | |
| cd05322 | 257 | cd05322, SDH_SDR_c_like, Sorbitol 6-phosphate dehy | 2e-13 | |
| PRK08264 | 238 | PRK08264, PRK08264, short chain dehydrogenase; Val | 2e-13 | |
| PRK10538 | 248 | PRK10538, PRK10538, malonic semialdehyde reductase | 2e-13 | |
| PRK12743 | 256 | PRK12743, PRK12743, oxidoreductase; Provisional | 2e-13 | |
| PRK06057 | 255 | PRK06057, PRK06057, short chain dehydrogenase; Pro | 2e-13 | |
| PRK07832 | 272 | PRK07832, PRK07832, short chain dehydrogenase; Pro | 3e-13 | |
| PRK06194 | 287 | PRK06194, PRK06194, hypothetical protein; Provisio | 3e-13 | |
| cd05349 | 246 | cd05349, BKR_2_SDR_c, putative beta-ketoacyl acyl | 4e-13 | |
| PRK05876 | 275 | PRK05876, PRK05876, short chain dehydrogenase; Pro | 5e-13 | |
| PRK05866 | 293 | PRK05866, PRK05866, short chain dehydrogenase; Pro | 8e-13 | |
| cd05330 | 257 | cd05330, cyclohexanol_reductase_SDR_c, cyclohexano | 9e-13 | |
| PRK08267 | 260 | PRK08267, PRK08267, short chain dehydrogenase; Pro | 1e-12 | |
| PRK06550 | 235 | PRK06550, fabG, 3-ketoacyl-(acyl-carrier-protein) | 2e-12 | |
| PLN02253 | 280 | PLN02253, PLN02253, xanthoxin dehydrogenase | 2e-12 | |
| PRK07074 | 257 | PRK07074, PRK07074, short chain dehydrogenase; Pro | 3e-12 | |
| TIGR04316 | 250 | TIGR04316, dhbA_paeA, 2,3-dihydro-2,3-dihydroxyben | 3e-12 | |
| PRK07677 | 252 | PRK07677, PRK07677, short chain dehydrogenase; Pro | 3e-12 | |
| PRK12828 | 239 | PRK12828, PRK12828, short chain dehydrogenase; Pro | 3e-12 | |
| PRK06138 | 252 | PRK06138, PRK06138, short chain dehydrogenase; Pro | 3e-12 | |
| PRK06523 | 260 | PRK06523, PRK06523, short chain dehydrogenase; Pro | 4e-12 | |
| PRK05693 | 274 | PRK05693, PRK05693, short chain dehydrogenase; Pro | 4e-12 | |
| PRK05872 | 296 | PRK05872, PRK05872, short chain dehydrogenase; Pro | 4e-12 | |
| PRK07890 | 258 | PRK07890, PRK07890, short chain dehydrogenase; Pro | 5e-12 | |
| cd05351 | 244 | cd05351, XR_like_SDR_c, xylulose reductase-like, c | 5e-12 | |
| PRK07097 | 265 | PRK07097, PRK07097, gluconate 5-dehydrogenase; Pro | 6e-12 | |
| PRK06113 | 255 | PRK06113, PRK06113, 7-alpha-hydroxysteroid dehydro | 8e-12 | |
| cd05331 | 244 | cd05331, DH-DHB-DH_SDR_c, 2,3 dihydro-2,3 dihydroz | 8e-12 | |
| PRK06198 | 260 | PRK06198, PRK06198, short chain dehydrogenase; Pro | 8e-12 | |
| PRK07454 | 241 | PRK07454, PRK07454, short chain dehydrogenase; Pro | 9e-12 | |
| PRK06914 | 280 | PRK06914, PRK06914, short chain dehydrogenase; Pro | 2e-11 | |
| TIGR03971 | 265 | TIGR03971, SDR_subfam_1, oxidoreductase, SDR famil | 3e-11 | |
| PRK08643 | 256 | PRK08643, PRK08643, acetoin reductase; Validated | 4e-11 | |
| PRK08278 | 273 | PRK08278, PRK08278, short chain dehydrogenase; Pro | 5e-11 | |
| PRK08251 | 248 | PRK08251, PRK08251, short chain dehydrogenase; Pro | 6e-11 | |
| cd05357 | 234 | cd05357, PR_SDR_c, pteridine reductase (PR), class | 6e-11 | |
| PRK06949 | 258 | PRK06949, PRK06949, short chain dehydrogenase; Pro | 8e-11 | |
| PRK08226 | 263 | PRK08226, PRK08226, short chain dehydrogenase; Pro | 1e-10 | |
| PRK09730 | 247 | PRK09730, PRK09730, putative NAD(P)-binding oxidor | 1e-10 | |
| PRK06125 | 259 | PRK06125, PRK06125, short chain dehydrogenase; Pro | 1e-10 | |
| PRK06398 | 258 | PRK06398, PRK06398, aldose dehydrogenase; Validate | 1e-10 | |
| TIGR01832 | 248 | TIGR01832, kduD, 2-deoxy-D-gluconate 3-dehydrogena | 2e-10 | |
| cd08942 | 250 | cd08942, RhlG_SDR_c, RhlG and related beta-ketoacy | 2e-10 | |
| cd05371 | 252 | cd05371, HSD10-like_SDR_c, 17hydroxysteroid dehydr | 2e-10 | |
| TIGR02632 | 676 | TIGR02632, RhaD_aldol-ADH, rhamnulose-1-phosphate | 3e-10 | |
| PRK12745 | 256 | PRK12745, PRK12745, 3-ketoacyl-(acyl-carrier-prote | 3e-10 | |
| PRK06935 | 258 | PRK06935, PRK06935, 2-deoxy-D-gluconate 3-dehydrog | 4e-10 | |
| TIGR03325 | 262 | TIGR03325, BphB_TodD, cis-2,3-dihydrobiphenyl-2,3- | 4e-10 | |
| cd05355 | 270 | cd05355, SDR_c1, classical (c) SDR, subgroup 1 | 4e-10 | |
| cd09763 | 265 | cd09763, DHRS1-like_SDR_c, human dehydrogenase/red | 5e-10 | |
| PRK06924 | 251 | PRK06924, PRK06924, short chain dehydrogenase; Pro | 5e-10 | |
| PRK08085 | 254 | PRK08085, PRK08085, gluconate 5-dehydrogenase; Pro | 6e-10 | |
| PRK07201 | 657 | PRK07201, PRK07201, short chain dehydrogenase; Pro | 7e-10 | |
| PRK08219 | 227 | PRK08219, PRK08219, short chain dehydrogenase; Pro | 2e-09 | |
| cd05354 | 235 | cd05354, SDR_c7, classical (c) SDR, subgroup 7 | 2e-09 | |
| PRK06200 | 263 | PRK06200, PRK06200, 2,3-dihydroxy-2,3-dihydropheny | 2e-09 | |
| PRK12744 | 257 | PRK12744, PRK12744, short chain dehydrogenase; Pro | 3e-09 | |
| cd05348 | 257 | cd05348, BphB-like_SDR_c, cis-biphenyl-2,3-dihydro | 3e-09 | |
| cd05340 | 236 | cd05340, Ycik_SDR_c, Escherichia coli K-12 YCIK-li | 3e-09 | |
| PRK07792 | 306 | PRK07792, fabG, 3-ketoacyl-(acyl-carrier-protein) | 3e-09 | |
| PRK08220 | 252 | PRK08220, PRK08220, 2,3-dihydroxybenzoate-2,3-dehy | 4e-09 | |
| PRK08265 | 261 | PRK08265, PRK08265, short chain dehydrogenase; Pro | 5e-09 | |
| PRK06179 | 270 | PRK06179, PRK06179, short chain dehydrogenase; Pro | 5e-09 | |
| cd09761 | 242 | cd09761, A3DFK9-like_SDR_c, Clostridium thermocell | 5e-09 | |
| PRK08642 | 253 | PRK08642, fabG, 3-ketoacyl-(acyl-carrier-protein) | 6e-09 | |
| PRK09186 | 256 | PRK09186, PRK09186, flagellin modification protein | 1e-08 | |
| PRK07791 | 286 | PRK07791, PRK07791, short chain dehydrogenase; Pro | 1e-08 | |
| PRK12859 | 256 | PRK12859, PRK12859, 3-ketoacyl-(acyl-carrier-prote | 1e-08 | |
| PRK06500 | 249 | PRK06500, PRK06500, short chain dehydrogenase; Pro | 1e-08 | |
| PRK07576 | 264 | PRK07576, PRK07576, short chain dehydrogenase; Pro | 2e-08 | |
| PRK12936 | 245 | PRK12936, PRK12936, 3-ketoacyl-(acyl-carrier-prote | 3e-08 | |
| PRK06182 | 273 | PRK06182, PRK06182, short chain dehydrogenase; Val | 3e-08 | |
| cd09762 | 243 | cd09762, HSDL2_SDR_c, human hydroxysteroid dehydro | 3e-08 | |
| cd11730 | 206 | cd11730, Tthb094_like_SDR_c, Tthb094 and related p | 4e-08 | |
| PRK12746 | 254 | PRK12746, PRK12746, short chain dehydrogenase; Pro | 5e-08 | |
| PRK07062 | 265 | PRK07062, PRK07062, short chain dehydrogenase; Pro | 6e-08 | |
| PRK06128 | 300 | PRK06128, PRK06128, oxidoreductase; Provisional | 7e-08 | |
| PRK07806 | 248 | PRK07806, PRK07806, short chain dehydrogenase; Pro | 1e-07 | |
| PRK08340 | 259 | PRK08340, PRK08340, glucose-1-dehydrogenase; Provi | 1e-07 | |
| PRK09135 | 249 | PRK09135, PRK09135, pteridine reductase; Provision | 1e-07 | |
| PRK05875 | 276 | PRK05875, PRK05875, short chain dehydrogenase; Pro | 1e-07 | |
| PRK07523 | 255 | PRK07523, PRK07523, gluconate 5-dehydrogenase; Pro | 1e-07 | |
| PRK06114 | 254 | PRK06114, PRK06114, short chain dehydrogenase; Pro | 1e-07 | |
| cd05368 | 241 | cd05368, DHRS6_like_SDR_c, human DHRS6-like, class | 2e-07 | |
| PRK07024 | 257 | PRK07024, PRK07024, short chain dehydrogenase; Pro | 2e-07 | |
| TIGR01829 | 242 | TIGR01829, AcAcCoA_reduct, acetoacetyl-CoA reducta | 2e-07 | |
| PLN02780 | 320 | PLN02780, PLN02780, ketoreductase/ oxidoreductase | 3e-07 | |
| PRK07023 | 243 | PRK07023, PRK07023, short chain dehydrogenase; Pro | 4e-07 | |
| PRK06701 | 290 | PRK06701, PRK06701, short chain dehydrogenase; Pro | 5e-07 | |
| PRK12481 | 251 | PRK12481, PRK12481, 2-deoxy-D-gluconate 3-dehydrog | 9e-07 | |
| cd09805 | 281 | cd09805, type2_17beta_HSD-like_SDR_c, human 17beta | 1e-06 | |
| PRK07775 | 274 | PRK07775, PRK07775, short chain dehydrogenase; Pro | 1e-06 | |
| PRK12748 | 256 | PRK12748, PRK12748, 3-ketoacyl-(acyl-carrier-prote | 2e-06 | |
| PRK07069 | 251 | PRK07069, PRK07069, short chain dehydrogenase; Val | 2e-06 | |
| PRK07985 | 294 | PRK07985, PRK07985, oxidoreductase; Provisional | 2e-06 | |
| cd08953 | 436 | cd08953, KR_2_SDR_x, ketoreductase (KR), subgroup | 2e-06 | |
| PRK07041 | 230 | PRK07041, PRK07041, short chain dehydrogenase; Pro | 3e-06 | |
| PRK12747 | 252 | PRK12747, PRK12747, short chain dehydrogenase; Pro | 4e-06 | |
| cd08951 | 260 | cd08951, DR_C-13_KR_SDR_c_like, daunorubicin C-13 | 4e-06 | |
| PRK12742 | 237 | PRK12742, PRK12742, oxidoreductase; Provisional | 4e-06 | |
| cd09807 | 274 | cd09807, retinol-DH_like_SDR_c, retinol dehydrogen | 8e-06 | |
| PRK08261 | 450 | PRK08261, fabG, 3-ketoacyl-(acyl-carrier-protein) | 1e-05 | |
| pfam13561 | 239 | pfam13561, adh_short_C2, Enoyl-(Acyl carrier prote | 2e-05 | |
| PRK12938 | 246 | PRK12938, PRK12938, acetyacetyl-CoA reductase; Pro | 2e-05 | |
| smart00822 | 180 | smart00822, PKS_KR, This enzymatic domain is part | 3e-05 | |
| cd09806 | 258 | cd09806, type1_17beta-HSD-like_SDR_c, human estrog | 4e-05 | |
| TIGR01500 | 256 | TIGR01500, sepiapter_red, sepiapterin reductase | 4e-05 | |
| PRK08993 | 253 | PRK08993, PRK08993, 2-deoxy-D-gluconate 3-dehydrog | 5e-05 | |
| PRK08703 | 239 | PRK08703, PRK08703, short chain dehydrogenase; Pro | 7e-05 | |
| PRK08177 | 225 | PRK08177, PRK08177, short chain dehydrogenase; Pro | 7e-05 | |
| PRK09291 | 257 | PRK09291, PRK09291, short chain dehydrogenase; Pro | 1e-04 | |
| PRK08628 | 258 | PRK08628, PRK08628, short chain dehydrogenase; Pro | 2e-04 | |
| PRK06197 | 306 | PRK06197, PRK06197, short chain dehydrogenase; Pro | 2e-04 | |
| pfam08659 | 181 | pfam08659, KR, KR domain | 3e-04 | |
| TIGR01831 | 239 | TIGR01831, fabG_rel, 3-oxoacyl-(acyl-carrier-prote | 3e-04 | |
| PRK08017 | 256 | PRK08017, PRK08017, oxidoreductase; Provisional | 7e-04 | |
| cd05274 | 375 | cd05274, KR_FAS_SDR_x, ketoreductase (KR) and fatt | 8e-04 | |
| cd05361 | 242 | cd05361, haloalcohol_DH_SDR_c-like, haloalcohol de | 0.001 | |
| cd05236 | 320 | cd05236, FAR-N_SDR_e, fatty acyl CoA reductases (F | 0.001 | |
| cd11731 | 198 | cd11731, Lin1944_like_SDR_c, Lin1944 and related p | 0.001 | |
| cd09810 | 311 | cd09810, LPOR_like_SDR_c_like, light-dependent pro | 0.002 | |
| PRK08303 | 305 | PRK08303, PRK08303, short chain dehydrogenase; Pro | 0.002 | |
| PRK08945 | 247 | PRK08945, PRK08945, putative oxoacyl-(acyl carrier | 0.002 | |
| PRK08416 | 260 | PRK08416, PRK08416, 7-alpha-hydroxysteroid dehydro | 0.003 | |
| PRK06101 | 240 | PRK06101, PRK06101, short chain dehydrogenase; Pro | 0.004 |
| >gnl|CDD|212491 cd05233, SDR_c, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 170 bits (433), Expect = 8e-50
Identities = 68/237 (28%), Positives = 107/237 (45%), Gaps = 26/237 (10%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
++TG++ G+G+A+AR G +VV+A R+ E++ EL G
Sbjct: 1 ALVTGASSGIGRAIARRLAREGAKVVLADRNEEALA----ELAAIEALG----------- 45
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQI 299
+ DV + DV+ L A+ EFG +DI +NNAG PL + T+E+ +++
Sbjct: 46 ---GNAVAVQADVSDEEDVEALVEEALEEFGRLDILVNNAGIA-RPGPLEELTDEDWDRV 101
Query: 300 VSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQAS 359
+ NL G L TR A+ M+ Q GG I N+ P A Y ++K L L S
Sbjct: 102 LDVNLTGVFLLTRAALPHMKKQ-GGGRIVNISSVAGLRPL-PGQAAYAASKAALEGLTRS 159
Query: 360 LFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMF-----NIICELPETVARTLV 411
L E + V+ +PG+V T +L + ++ PE VA +V
Sbjct: 160 LALELAPYGIRVNAVAPGLVDTPMLAKLGPEEAEKELAAAIPLGRLGTPEEVAEAVV 216
|
SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 234 |
| >gnl|CDD|223959 COG1028, FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 132 bits (334), Expect = 1e-35
Identities = 67/208 (32%), Positives = 104/208 (50%), Gaps = 20/208 (9%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ ++TG++ G+G+A+AR G RVVVA+R SE E E L + AGG
Sbjct: 6 KVALVTGASSGIGRAIARALAREGARVVVAARRSEE------EAAEALAAAIKEAGG--- 56
Query: 238 KNLVHAKVAGIACDV-CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEI 296
+ A +A DV + V+ L A EFG IDI +NNAG PL + T E+
Sbjct: 57 -----GRAAAVAADVSDDEESVEALVAAAEEEFGRIDILVNNAGIAGPDAPLEELTEEDW 111
Query: 297 EQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQL 356
++++ NL+G+ L TR A+ +M+ Q I N+ + +G P A Y ++K L L
Sbjct: 112 DRVIDVNLLGAFLLTRAALPLMKKQ----RIVNI-SSVAGLGGPPGQAAYAASKAALIGL 166
Query: 357 QASLFKESKRSKVGVHTASPGMVLTDLL 384
+L E + V+ +PG + T +
Sbjct: 167 TKALALELAPRGIRVNAVAPGYIDTPMT 194
|
Length = 251 |
| >gnl|CDD|235975 PRK07231, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 130 bits (329), Expect = 1e-34
Identities = 66/222 (29%), Positives = 103/222 (46%), Gaps = 23/222 (10%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ ++TG++ G+G+ +AR F G RVVV R+ E+ E+ AGG
Sbjct: 6 KVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEIL---------AGG--- 53
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
+ +A DV + ADV+ A+ FGS+DI +NNAGT PLL E +
Sbjct: 54 ------RAIAVAADVSDEADVEAAVAAALERFGSVDILVNNAGTTHRNGPLLDVDEAEFD 107
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQ 357
+I + N+ L T+ A+ MR + GG I N+ G P Y ++K + L
Sbjct: 108 RIFAVNVKSPYLWTQAAVPAMRGE-GGGAIVNVASTA-GLRPRPGLGWYNASKGAVITLT 165
Query: 358 ASLFKESKRSKVGVHTASPGMVLTDL---LLSGSTIQNKQMF 396
+L E K+ V+ +P +V T L + T +N+ F
Sbjct: 166 KALAAELGPDKIRVNAVAPVVVETGLLEAFMGEPTPENRAKF 207
|
Length = 251 |
| >gnl|CDD|223377 COG0300, DltE, Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Score = 125 bits (317), Expect = 7e-33
Identities = 64/275 (23%), Positives = 117/275 (42%), Gaps = 28/275 (10%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ +ITG++ G+G LA++ G +++ +R + L + L+
Sbjct: 7 KTALITGASSGIGAELAKQLARRGYNLILVARR----EDKLEALAKELE----------D 52
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
K V +V I D+ +P +++L + G ID+ +NNAG F P L+ + +E E
Sbjct: 53 KTGVEVEV--IPADLSDPEALERLEDELKERGGPIDVLVNNAGFG-TFGPFLELSLDEEE 109
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQ 357
+++ N++ T+ + M ++ GHI N+ G+ +G TP AVY +TK +
Sbjct: 110 EMIQLNILALTRLTKAVLPGMVER-GAGHIINI-GSAAGLIPTPYMAVYSATKAFVLSFS 167
Query: 358 ASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVP----- 412
+L +E K + V V PG T+ + + + PE VA +
Sbjct: 168 EALREELKGTGVKVTAVCPGPTRTEFFDAKGSDVYLLSPGELVLSPEDVAEAALKALEKG 227
Query: 413 -RIRVVKGSGKAIN---YLTPPRILLALVTAWLRR 443
R + KA+ L P + L ++
Sbjct: 228 KREIIPGLPNKALALSFRLLPRSLREKLAGKIFKK 262
|
Length = 265 |
| >gnl|CDD|235500 PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Score = 117 bits (297), Expect = 3e-30
Identities = 59/211 (27%), Positives = 99/211 (46%), Gaps = 19/211 (9%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ ++TG++RG+G+A+A G VV+ SSE+ E L + A GG
Sbjct: 6 KVALVTGASRGIGRAIAERLAAQGANVVINYASSEA-------GAEALVAEIGALGG--- 55
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
K + DV + V++ + A EFG +DI +NNAG + L++ E+ +
Sbjct: 56 ------KALAVQGDVSDAESVERAVDEAKAEFGGVDILVNNAGITRD-NLLMRMKEEDWD 108
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQ 357
+++ TNL G T+ R M Q + G I N+ + G P A Y ++K G+
Sbjct: 109 RVIDTNLTGVFNLTKAVARPMMKQ-RSGRIINI-SSVVGLMGNPGQANYAASKAGVIGFT 166
Query: 358 ASLFKESKRSKVGVHTASPGMVLTDLLLSGS 388
SL +E + V+ +PG + TD+ +
Sbjct: 167 KSLARELASRGITVNAVAPGFIETDMTDALP 197
|
Length = 248 |
| >gnl|CDD|235506 PRK05565, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 8e-29
Identities = 58/225 (25%), Positives = 103/225 (45%), Gaps = 24/225 (10%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVA-SRSSESVRMTVTELEENLKEGMMAAGGSSKK 238
++TG++ G+G+A+A G +VV+A + E+ + + E++E
Sbjct: 8 AIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEE-------------- 53
Query: 239 NLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQ 298
+ DV DV+ L V +FG IDI +NNAG + F + T+EE ++
Sbjct: 54 ---GGDAIAVKADVSSEEDVENLVEQIVEKFGKIDILVNNAGISN-FGLVTDMTDEEWDR 109
Query: 299 IVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQA 358
++ NL G +L TR A+ M + K G I N+ G +Y ++K +
Sbjct: 110 VIDVNLTGVMLLTRYALPYMIKR-KSGVIVNISSIW-GLIGASCEVLYSASKGAVNAFTK 167
Query: 359 SLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELP 403
+L KE S + V+ +PG + T++ S+ + + E+P
Sbjct: 168 ALAKELAPSGIRVNAVAPGAIDTEM---WSSFSEEDKEGLAEEIP 209
|
Length = 247 |
| >gnl|CDD|226674 COG4221, COG4221, Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only] | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 1e-28
Identities = 63/211 (29%), Positives = 101/211 (47%), Gaps = 22/211 (10%)
Query: 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAG 233
+ +ITG++ G+G+A AR +G +VV+A+R E + L + + G
Sbjct: 3 TLKGKVALITGASSGIGEATARALAEAGAKVVLAARREE----RLEALADEIGAG----- 53
Query: 234 GSSKKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTN 293
+A DV + A V+ EFG IDI +NNAG G PL +
Sbjct: 54 ----------AALALALDVTDRAAVEAAIEALPEEFGRIDILVNNAGLALG-DPLDEADL 102
Query: 294 EEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGL 353
++ ++++ TN+ G + TR + M ++ K GHI N+ G+ +G P AVYG+TK +
Sbjct: 103 DDWDRMIDTNVKGLLNGTRAVLPGMVER-KSGHIINL-GSIAGRYPYPGGAVYGATKAAV 160
Query: 354 RQLQASLFKESKRSKVGVHTASPGMVLTDLL 384
R L +E + + V SPG+V T
Sbjct: 161 RAFSLGLRQELAGTGIRVTVISPGLVETTEF 191
|
Length = 246 |
| >gnl|CDD|237100 PRK12429, PRK12429, 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 2e-28
Identities = 60/204 (29%), Positives = 95/204 (46%), Gaps = 20/204 (9%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
++TG+ G+G +A G +VV+A + E+ L++ AGG
Sbjct: 7 ALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQK--------AGG----- 53
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQI 299
K G+A DV + + ++AV FG +DI +NNAG + P+ F E+ +++
Sbjct: 54 ----KAIGVAMDVTDEEAINAGIDYAVETFGGVDILVNNAGI-QHVAPIEDFPTEKWKKM 108
Query: 300 VSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQAS 359
++ L G+ L T+ A+ +M+ Q GG I NM + G + A Y S K GL L
Sbjct: 109 IAIMLDGAFLTTKAALPIMKAQ-GGGRIINM-ASVHGLVGSAGKAAYVSAKHGLIGLTKV 166
Query: 360 LFKESKRSKVGVHTASPGMVLTDL 383
+ E V V+ PG V T L
Sbjct: 167 VALEGATHGVTVNAICPGYVDTPL 190
|
Length = 258 |
| >gnl|CDD|235546 PRK05653, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 8e-28
Identities = 57/222 (25%), Positives = 99/222 (44%), Gaps = 20/222 (9%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ ++TG++RG+G+A+A G +VV+ + E+ EL AAGG
Sbjct: 6 KTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELR--------AAGG--- 54
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
+ + DV + A V+ L AV FG++DI +NNAG L + + E+ +
Sbjct: 55 ------EARVLVFDVSDEAAVRALIEAAVEAFGALDILVNNAGIT-RDALLPRMSEEDWD 107
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQ 357
+++ NL G+ R A+ M + G I N+ + SG + P Y + K G+
Sbjct: 108 RVIDVNLTGTFNVVRAALPPMIKA-RYGRIVNI-SSVSGVTGNPGQTNYSAAKAGVIGFT 165
Query: 358 ASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNII 399
+L E + V+ +PG + TD+ ++ I
Sbjct: 166 KALALELASRGITVNAVAPGFIDTDMTEGLPEEVKAEILKEI 207
|
Length = 246 |
| >gnl|CDD|187632 cd05374, 17beta-HSD-like_SDR_c, 17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 1e-27
Identities = 54/205 (26%), Positives = 87/205 (42%), Gaps = 23/205 (11%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
V+ITG + G+G ALA G RV+ +R+ + + E + +
Sbjct: 3 VLITGCSSGIGLALALALAAQGYRVIATARNPDKL------------ESLGELLNDN--- 47
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQI 299
+ + DV + ++ + FG ID+ +NNAG F PL + + EE+ ++
Sbjct: 48 -----LEVLELDVTDEESIKAAVKEVIERFGRIDVLVNNAGYG-LFGPLEETSIEEVREL 101
Query: 300 VSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQAS 359
N+ G + TR + +MR Q G I N+ + +G TP Y ++K L L S
Sbjct: 102 FEVNVFGPLRVTRAFLPLMRKQ-GSGRIVNV-SSVAGLVPTPFLGPYCASKAALEALSES 159
Query: 360 LFKESKRSKVGVHTASPGMVLTDLL 384
L E + V PG V T
Sbjct: 160 LRLELAPFGIKVTIIEPGPVRTGFA 184
|
17beta-hydroxysteroid dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 248 |
| >gnl|CDD|236116 PRK07856, PRK07856, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 2e-27
Identities = 67/206 (32%), Positives = 93/206 (45%), Gaps = 28/206 (13%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
R V++TG TRG+G +AR FL +G VVV R G
Sbjct: 7 RVVLVTGGTRGIGAGIARAFLAAGATVVVCGRR----------------APETVDG---- 46
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
A DV +P V L + V G +D+ +NNAG + + + + E
Sbjct: 47 -----RPAEFHAADVRDPDQVAALVDAIVERHGRLDVLVNNAGGSP-YALAAEASPRFHE 100
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQ 357
+IV NL+ +L + A VM+ QP GG I N+ G+ SG +P TA YG+ K GL L
Sbjct: 101 KIVELNLLAPLLVAQAANAVMQQQPGGGSIVNI-GSVSGRRPSPGTAAYGAAKAGLLNLT 159
Query: 358 ASLFKESKRSKVGVHTASPGMVLTDL 383
SL E KV V+ G+V T+
Sbjct: 160 RSLAVEWA-PKVRVNAVVVGLVRTEQ 184
|
Length = 252 |
| >gnl|CDD|187616 cd05358, GlcDH_SDR_c, glucose 1 dehydrogenase (GlcDH), classical (c) SDRs | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 4e-27
Identities = 64/212 (30%), Positives = 98/212 (46%), Gaps = 30/212 (14%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ ++TG++ G+GKA+A +G VVV RS E E + E + A GG K
Sbjct: 4 KVALVTGASSGIGKAIAIRLATAGANVVVNYRSKEDA-------AEEVVEEIKAVGG--K 54
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
V A DV + DV L A+ EFG++DI +NNAG + T E+
Sbjct: 55 AIAVQA-------DVSKEEDVVALFQSAIKEFGTLDILVNNAGLQGDA-SSHEMTLEDWN 106
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSST------PLTAVYGSTKC 351
+++ NL G LC REA++ R G I NM SS P Y ++K
Sbjct: 107 KVIDVNLTGQFLCAREAIKRFRKSKIKGKIINM-------SSVHEKIPWPGHVNYAASKG 159
Query: 352 GLRQLQASLFKESKRSKVGVHTASPGMVLTDL 383
G++ + +L +E + V+ +PG + T +
Sbjct: 160 GVKMMTKTLAQEYAPKGIRVNAIAPGAINTPI 191
|
GlcDH, is a tetrameric member of the SDR family, it catalyzes the NAD(P)-dependent oxidation of beta-D-glucose to D-glucono-delta-lactone. GlcDH has a typical NAD-binding site glycine-rich pattern as well as the canonical active site tetrad (YXXXK motif plus upstream Ser and Asn). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 253 |
| >gnl|CDD|187620 cd05362, THN_reductase-like_SDR_c, tetrahydroxynaphthalene/trihydroxynaphthalene reductase-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 1e-26
Identities = 63/210 (30%), Positives = 102/210 (48%), Gaps = 23/210 (10%)
Query: 181 VITGSTRGLGKALAREFLLSGDRVVVA-SRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
++TG++RG+G+A+A+ G VVV + S + V E+E AAGG
Sbjct: 7 LVTGASRGIGRAIAKRLARDGASVVVNYASSKAAAEEVVAEIE--------AAGG----- 53
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQI 299
K + DV +P+ V +L + A FG +DI +NNAG KP+ + + EE +++
Sbjct: 54 ----KAIAVQADVSDPSQVARLFDAAEKAFGGVDILVNNAGVML-KKPIAETSEEEFDRM 108
Query: 300 VSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQAS 359
+ N G+ +EA + +RD GG I N+ + + TP Y +K +
Sbjct: 109 FTVNTKGAFFVLQEAAKRLRD---GGRIINI-SSSLTAAYTPNYGAYAGSKAAVEAFTRV 164
Query: 360 LFKESKRSKVGVHTASPGMVLTDLLLSGST 389
L KE + V+ +PG V TD+ +G T
Sbjct: 165 LAKELGGRGITVNAVAPGPVDTDMFYAGKT 194
|
1,3,6,8-tetrahydroxynaphthalene reductase (4HNR) of Magnaporthe grisea and the related 1,3,8-trihydroxynaphthalene reductase (3HNR) are typical members of the SDR family containing the canonical glycine rich NAD(P)-binding site and active site tetrad, and function in fungal melanin biosynthesis. This subgroup also includes an SDR from Norway spruce that may function to protect against both biotic and abitoic stress. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 243 |
| >gnl|CDD|187617 cd05359, ChcA_like_SDR_c, 1-cyclohexenylcarbonyl_coenzyme A_reductase (ChcA)_like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 2e-26
Identities = 64/251 (25%), Positives = 106/251 (42%), Gaps = 27/251 (10%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
++TG +RG+GKA+A G VV+ R S+ + + + GG
Sbjct: 1 ALVTGGSRGIGKAIALRLAERGADVVINYRKSK-------DAAAEVAAEIEELGG----- 48
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQI 299
K + DV +P DV+++ FG +D+ ++NA F+PL + T +
Sbjct: 49 ----KAVVVRADVSQPQDVEEMFAAVKERFGRLDVLVSNAAAG-AFRPLSELTPAHWDAK 103
Query: 300 VSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQAS 359
++TNL + C ++A ++MR++ GG I + GS + AV G+ K L L
Sbjct: 104 MNTNLKALVHCAQQAAKLMRER-GGGRIVAISSLGSIRALPNYLAV-GTAKAALEALVRY 161
Query: 360 LFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPRIRVVKG 419
L E + V+ SPG++ TD L N L A T R+ +
Sbjct: 162 LAVELGPRGIRVNAVSPGVIDTDAL--------AHFPNREDLLEAAAANTPAGRVGTPQD 213
Query: 420 SGKAINYLTPP 430
A+ +L
Sbjct: 214 VADAVGFLCSD 224
|
This subgroup contains classical SDR proteins, including members identified as 1-cyclohexenylcarbonyl coenzyme A reductase. ChcA of Streptomyces collinus is implicated in the final reduction step of shikimic acid to ansatrienin. ChcA shows sequence similarity to the SDR family of NAD-binding proteins, but it lacks the conserved Tyr of the characteristic catalytic site. This subgroup also contains the NADH-dependent enoyl-[acyl-carrier-protein(ACP)] reductase FabL from Bacillus subtilis. This enzyme participates in bacterial fatty acid synthesis, in type II fatty-acid synthases and catalyzes the last step in each elongation cycle. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 242 |
| >gnl|CDD|183778 PRK12829, PRK12829, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 2e-26
Identities = 58/203 (28%), Positives = 90/203 (44%), Gaps = 22/203 (10%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
V++TG G+G+A+A F +G RV V S ++ T L
Sbjct: 12 LRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPG-------------- 57
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
AKV DV +PA V+++ + AV FG +D+ +NNAG + + T E+ E
Sbjct: 58 -----AKVTATVADVADPAQVERVFDTAVERFGGLDVLVNNAGIAGPTGGIDEITPEQWE 112
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNM-DGAGSGGSSTPLTAVYGSTKCGLRQL 356
Q ++ NL G R A+ +++ GG I + AG G P Y ++K + L
Sbjct: 113 QTLAVNLNGQFYFARAAVPLLKASGHGGVIIALSSVAGRLG--YPGRTPYAASKWAVVGL 170
Query: 357 QASLFKESKRSKVGVHTASPGMV 379
SL E + V+ PG+V
Sbjct: 171 VKSLAIELGPLGIRVNAILPGIV 193
|
Length = 264 |
| >gnl|CDD|233590 TIGR01830, 3oxo_ACP_reduc, 3-oxoacyl-(acyl-carrier-protein) reductase | Back alignment and domain information |
|---|
Score = 104 bits (263), Expect = 1e-25
Identities = 64/217 (29%), Positives = 104/217 (47%), Gaps = 21/217 (9%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
++TG++RG+G+A+A + G +V++ RSSE E E + E + A G
Sbjct: 1 ALVTGASRGIGRAIALKLAKEGAKVIITYRSSE-------EGAEEVVEELKAYGV----- 48
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAG-TNKGFKPLLQFTNEEIEQ 298
K G+ CDV + DV+ + E G IDI +NNAG T L++ E+ +
Sbjct: 49 ----KALGVVCDVSDREDVKAVVEEIEEELGPIDILVNNAGITRDNL--LMRMKEEDWDA 102
Query: 299 IVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQA 358
++ TNL G T+ +R+M Q + G I N+ + G A Y ++K G+
Sbjct: 103 VIDTNLTGVFNLTQAVLRIMIKQ-RSGRIINI-SSVVGLMGNAGQANYAASKAGVIGFTK 160
Query: 359 SLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQM 395
SL KE + V+ +PG + TD+ S K++
Sbjct: 161 SLAKELASRNITVNAVAPGFIDTDMTDKLSEKVKKKI 197
|
This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis [Fatty acid and phospholipid metabolism, Biosynthesis]. Length = 239 |
| >gnl|CDD|187594 cd05333, BKR_SDR_c, beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 6e-25
Identities = 60/207 (28%), Positives = 99/207 (47%), Gaps = 22/207 (10%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ ++TG++RG+G+A+A G +V V RS E+ TV E++ A GG
Sbjct: 1 KVALVTGASRGIGRAIALRLAAEGAKVAVTDRSEEAAAETVEEIK--------ALGG--- 49
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAG-TNKGFKPLLQFTNEEI 296
A + DV + V+ L EFG +DI +NNAG T L++ + E+
Sbjct: 50 ------NAAALEADVSDREAVEALVEKVEAEFGPVDILVNNAGITRDNL--LMRMSEEDW 101
Query: 297 EQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQL 356
+ +++ NL G T+ +R M + + G I N+ + G P A Y ++K G+
Sbjct: 102 DAVINVNLTGVFNVTQAVIRAMIKR-RSGRIINI-SSVVGLIGNPGQANYAASKAGVIGF 159
Query: 357 QASLFKESKRSKVGVHTASPGMVLTDL 383
SL KE + V+ +PG + TD+
Sbjct: 160 TKSLAKELASRGITVNAVAPGFIDTDM 186
|
This subgroup includes the Escherichai coli K12 BKR, FabG. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet) NAD(P)(H) binding region and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H) binding pattern: TGxxxGxG in classical SDRs. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P) binding motif and an altered active site motif (YXXXN). Fungal type type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P) binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr-151 and Lys-155, and well as Asn-111 (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 240 |
| >gnl|CDD|235935 PRK07109, PRK07109, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 7e-25
Identities = 56/183 (30%), Positives = 83/183 (45%), Gaps = 24/183 (13%)
Query: 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAG 233
G + VVITG++ G+G+A AR F G +VV+ +R E + E+ AAG
Sbjct: 5 PIGRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIR--------AAG 56
Query: 234 GSSKKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTN 293
G + + DV + VQ ++ A E G ID W+NNA F P T
Sbjct: 57 G---------EALAVVADVADAEAVQAAADRAEEELGPIDTWVNNAMVTV-FGPFEDVTP 106
Query: 294 EEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGS--STPLTAVYGSTKC 351
EE ++ +G + T A+R MR + G I + GS + S PL + Y + K
Sbjct: 107 EEFRRVTEVTYLGVVHGTLAALRHMRPR-DRGAIIQV---GSALAYRSIPLQSAYCAAKH 162
Query: 352 GLR 354
+R
Sbjct: 163 AIR 165
|
Length = 334 |
| >gnl|CDD|237218 PRK12825, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 8e-25
Identities = 61/206 (29%), Positives = 95/206 (46%), Gaps = 21/206 (10%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSES-VRMTVTELEENLKEGMMAAGGSS 236
R ++TG+ RGLG+A+A +G VVV RS E V +E
Sbjct: 7 RVALVTGAARGLGRAIALRLARAGADVVVHYRSDEEAAEELVEAVEAL------------ 54
Query: 237 KKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEI 296
+ + DV + A ++ AV FG IDI +NNAG + KPL +++E
Sbjct: 55 -----GRRAQAVQADVTDKAALEAAVAAAVERFGRIDILVNNAGIFED-KPLADMSDDEW 108
Query: 297 EQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQL 356
++++ NL G R + MR Q +GG I N+ + +G P + Y + K GL L
Sbjct: 109 DEVIDVNLSGVFHLLRAVVPPMRKQ-RGGRIVNI-SSVAGLPGWPGRSNYAAAKAGLVGL 166
Query: 357 QASLFKESKRSKVGVHTASPGMVLTD 382
+L +E + V+ +PG + TD
Sbjct: 167 TKALARELAEYGITVNMVAPGDIDTD 192
|
Length = 249 |
| >gnl|CDD|187610 cd05352, MDH-like_SDR_c, mannitol dehydrogenase (MDH)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 8e-25
Identities = 63/211 (29%), Positives = 94/211 (44%), Gaps = 27/211 (12%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ ++TG +RG+G A+AR +G V + S+ EE +E +K
Sbjct: 9 KVAIVTGGSRGIGLAIARALAEAGADVAIIYNSAP-------RAEEKAEE-------LAK 54
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
K V K CDV V+K +FG IDI I NAG KP L +T E+
Sbjct: 55 KYGVKTKA--YKCDVSSQESVEKTFKQIQKDFGKIDILIANAGITVH-KPALDYTYEQWN 111
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSST----PLT-AVYGSTKCG 352
+++ NL G C + A ++ + Q KG I + S T P A Y ++K
Sbjct: 112 KVIDVNLNGVFNCAQAAAKIFKKQGKGSLIIT-----ASMSGTIVNRPQPQAAYNASKAA 166
Query: 353 LRQLQASLFKESKRSKVGVHTASPGMVLTDL 383
+ L SL E + + V++ SPG + TDL
Sbjct: 167 VIHLAKSLAVEWAKYFIRVNSISPGYIDTDL 197
|
NADP-mannitol dehydrogenase catalyzes the conversion of fructose to mannitol, an acyclic 6-carbon sugar. MDH is a tetrameric member of the SDR family. This subgroup also includes various other tetrameric SDRs, including Pichia stipitis D-arabinitol dehydrogenase (aka polyol dehydrogenase), Candida albicans Sou1p, a sorbose reductase, and Candida parapsilosis (S)-specific carbonyl reductase (SCR, aka S-specific alcohol dehydrogenase) which catalyzes the enantioselective reduction of 2-hydroxyacetophenone into (S)-1-phenyl-1,2-ethanediol. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Length = 252 |
| >gnl|CDD|187648 cd08944, SDR_c12, classical (c) SDR, subgroup 12 | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 1e-24
Identities = 59/207 (28%), Positives = 95/207 (45%), Gaps = 22/207 (10%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
++TG+ G+G A A G RVVVA + + V ++ AGG+
Sbjct: 6 AIVTGAGAGIGAACAARLAREGARVVVADIDGGAAQAVVAQI----------AGGA---- 51
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQI 299
+ DV + V L AV EFG +D+ +NNAG ++ +Q
Sbjct: 52 ------LALRVDVTDEQQVAALFERAVEEFGGLDLLVNNAGAMHLTPAIIDTDLAVWDQT 105
Query: 300 VSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQAS 359
++ NL G+ LC R A M + GG I N+ + +G S P YG++K +R L +
Sbjct: 106 MAINLRGTFLCCRHAAPRMIAR-GGGSIVNLS-SIAGQSGDPGYGAYGASKAAIRNLTRT 163
Query: 360 LFKESKRSKVGVHTASPGMVLTDLLLS 386
L E + + + + +PG++ T LLL+
Sbjct: 164 LAAELRHAGIRCNALAPGLIDTPLLLA 190
|
These are classical SDRs, with the canonical active site tetrad and glycine-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 246 |
| >gnl|CDD|235990 PRK07326, PRK07326, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 4e-24
Identities = 66/245 (26%), Positives = 108/245 (44%), Gaps = 36/245 (14%)
Query: 182 ITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLV 241
ITG ++G+G A+A L G +V + +R + + EL
Sbjct: 11 ITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNN------------------ 52
Query: 242 HAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVS 301
V G+A DV + ADVQ+ + V FG +D+ I NAG F P+ + T EE ++
Sbjct: 53 KGNVLGLAADVRDEADVQRAVDAIVAAFGGLDVLIANAGVGH-FAPVEELTPEEWRLVID 111
Query: 302 TNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLT--AVYGSTKCGLRQLQAS 359
TNL G+ + A+ ++ GG+I N+ S + A Y ++K GL +
Sbjct: 112 TNLTGAFYTIKAAVPALKRG--GGYIINI---SSLAGTNFFAGGAAYNASKFGLVGFSEA 166
Query: 360 LFKESKRSKVGVHTASPGMVLTDLLLSGST--------IQNKQMFNIICELPETVARTLV 411
+ ++ + V T PG V T +G T IQ + + ++ +L + RTL
Sbjct: 167 AMLDLRQYGIKVSTIMPGSVATH--FNGHTPSEKDAWKIQPEDIAQLVLDLLKMPPRTLP 224
Query: 412 PRIRV 416
+I V
Sbjct: 225 SKIEV 229
|
Length = 237 |
| >gnl|CDD|187643 cd08939, KDSR-like_SDR_c, 3-ketodihydrosphingosine reductase (KDSR) and related proteins, classical (c) SDR | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 5e-24
Identities = 56/206 (27%), Positives = 96/206 (46%), Gaps = 20/206 (9%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
++V+ITG + G+GKALA+E + G V++ +RS + V E+E ++
Sbjct: 2 KHVLITGGSSGIGKALAKELVKEGANVIIVARSESKLEEAVEEIE-------------AE 48
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
N KV+ I+ D+ + +V++ AV + G D+ +N AG + T EE E
Sbjct: 49 ANASGQKVSYISADLSDYEEVEQAFAQAVEKGGPPDLVVNCAGISI-PGLFEDLTAEEFE 107
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLT--AVYGSTKCGLRQ 355
+ + N GS+ + +M++Q + GHI + S + + + Y +K LR
Sbjct: 108 RGMDVNYFGSLNVAHAVLPLMKEQ-RPGHIVFV---SSQAALVGIYGYSAYCPSKFALRG 163
Query: 356 LQASLFKESKRSKVGVHTASPGMVLT 381
L SL +E K + V P T
Sbjct: 164 LAESLRQELKPYNIRVSVVYPPDTDT 189
|
These proteins include members identified as KDSR, ribitol type dehydrogenase, and others. The group shows strong conservation of the active site tetrad and glycine rich NAD-binding motif of the classical SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 239 |
| >gnl|CDD|187618 cd05360, SDR_c3, classical (c) SDR, subgroup 3 | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 6e-24
Identities = 60/193 (31%), Positives = 93/193 (48%), Gaps = 20/193 (10%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
VVITG++ G+G+A A F G +VV+A+RS+E++ E+ E GG
Sbjct: 3 VVITGASSGIGRATALAFAERGAKVVLAARSAEALHELAREVRE--------LGG----- 49
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQI 299
+ + DV + A V++ ++ AV FG ID W+NNAG F T EE ++
Sbjct: 50 ----EAIAVVADVADAAQVERAADTAVERFGRIDTWVNNAGVAV-FGRFEDVTPEEFRRV 104
Query: 300 VSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQAS 359
N +G + T A+ +R + GG + N+ G+ G S PL A Y ++K +R S
Sbjct: 105 FDVNYLGHVYGTLAALPHLRRR-GGGALINV-GSLLGYRSAPLQAAYSASKHAVRGFTES 162
Query: 360 LFKESKRSKVGVH 372
L E +
Sbjct: 163 LRAELAHDGAPIS 175
|
These proteins are members of the classical SDR family, with a canonical active site triad (and also active site Asn) and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 233 |
| >gnl|CDD|187590 cd05329, TR_SDR_c, tropinone reductase-I and II (TR-1, and TR-II)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 7e-24
Identities = 65/225 (28%), Positives = 107/225 (47%), Gaps = 23/225 (10%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ ++TG T+G+G A+ E G V +R+ + EL+E L E +
Sbjct: 7 KTALVTGGTKGIGYAIVEELAGLGAEVYTCARNQK-------ELDECLTE-------WRE 52
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGS-IDIWINNAGTNKGFKPLLQFTNEEI 296
K KV G CDV ++ Q+L + + FG ++I +NNAGTN K +T E+
Sbjct: 53 KGF---KVEGSVCDVSSRSERQELMDTVASHFGGKLNILVNNAGTNI-RKEAKDYTEEDY 108
Query: 297 EQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQL 356
I+STN + +R A +++ G +F + +G + P A YG+TK L QL
Sbjct: 109 SLIMSTNFEAAYHLSRLAHPLLKASGNGNIVFI--SSVAGVIAVPSGAPYGATKGALNQL 166
Query: 357 QASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICE 401
SL E + + V+ +P ++ T L+ IQ K+ + + E
Sbjct: 167 TRSLACEWAKDNIRVNAVAPWVIATPLV--EPVIQQKENLDKVIE 209
|
This subgroup includes TR-I and TR-II; these proteins are members of the SDR family. TRs catalyze the NADPH-dependent reductions of the 3-carbonyl group of tropinone, to a beta-hydroxyl group. TR-I and TR-II produce different stereoisomers from tropinone, TR-I produces tropine (3alpha-hydroxytropane), and TR-II, produces pseudotropine (sigma-tropine, 3beta-hydroxytropane). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 251 |
| >gnl|CDD|183833 PRK12939, PRK12939, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 99.3 bits (248), Expect = 1e-23
Identities = 56/216 (25%), Positives = 90/216 (41%), Gaps = 32/216 (14%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ ++TG+ RGLG A A +G V + R LE AAGG
Sbjct: 8 KRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALE--------AAGG--- 56
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAG-TNKGFKPLLQFTNEEI 296
+ IA D+ +PA VQ+ + A G +D +NNAG TN K + +
Sbjct: 57 ------RAHAIAADLADPASVQRFFDAAAAALGGLDGLVNNAGITNS--KSATELDIDTW 108
Query: 297 EQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPL-----TAVYGSTKC 351
+ +++ N+ G+ L R A+ +RD G I N+ S T L Y ++K
Sbjct: 109 DAVMNVNVRGTFLMLRAALPHLRDSG-RGRIVNL------ASDTALWGAPKLGAYVASKG 161
Query: 352 GLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSG 387
+ + SL +E + V+ +PG+ T+
Sbjct: 162 AVIGMTRSLARELGGRGITVNAIAPGLTATEATAYV 197
|
Length = 250 |
| >gnl|CDD|187604 cd05346, SDR_c5, classical (c) SDR, subgroup 5 | Back alignment and domain information |
|---|
Score = 98.9 bits (247), Expect = 2e-23
Identities = 59/206 (28%), Positives = 97/206 (47%), Gaps = 22/206 (10%)
Query: 179 NVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKK 238
V+ITG++ G+G+A AR F +G ++++ R +E ++ EL
Sbjct: 2 TVLITGASSGIGEATARRFAKAGAKLILTGRRAERLQELADELGAKFP------------ 49
Query: 239 NLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQ 298
KV + DV + ++ EF IDI +NNAG G P + E+ E
Sbjct: 50 ----VKVLPLQLDVSDRESIEAALENLPEEFRDIDILVNNAGLALGLDPAQEADLEDWET 105
Query: 299 IVSTNLVGSILCTREAMRVM--RDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQL 356
++ TN+ G + TR + +M R+Q GHI N+ G+ +G VY +TK +RQ
Sbjct: 106 MIDTNVKGLLNVTRLILPIMIARNQ---GHIINL-GSIAGRYPYAGGNVYCATKAAVRQF 161
Query: 357 QASLFKESKRSKVGVHTASPGMVLTD 382
+L K+ + + V PG+V T+
Sbjct: 162 SLNLRKDLIGTGIRVTNIEPGLVETE 187
|
These proteins are members of the classical SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 249 |
| >gnl|CDD|183775 PRK12826, PRK12826, 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Score = 97.7 bits (244), Expect = 5e-23
Identities = 54/208 (25%), Positives = 86/208 (41%), Gaps = 21/208 (10%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
R ++TG+ RG+G+A+A G V+V + T +E AAGG
Sbjct: 7 RVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVE--------AAGG--- 55
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAG-TNKGFKPLLQFTNEEI 296
K DV + A ++ V +FG +DI + NAG P + +E+
Sbjct: 56 ------KARARQVDVRDRAALKAAVAAGVEDFGRLDILVANAGIFPLT--PFAEMDDEQW 107
Query: 297 EQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQL 356
E+++ NL G+ L T+ A+ + GG I P A Y ++K GL
Sbjct: 108 ERVIDVNLTGTFLLTQAALPALIRA-GGGRIVLTSSVAGPRVGYPGLAHYAASKAGLVGF 166
Query: 357 QASLFKESKRSKVGVHTASPGMVLTDLL 384
+L E + V++ PG V T +
Sbjct: 167 TRALALELAARNITVNSVHPGGVDTPMA 194
|
Length = 251 |
| >gnl|CDD|211705 TIGR01963, PHB_DH, 3-hydroxybutyrate dehydrogenase | Back alignment and domain information |
|---|
Score = 97.4 bits (243), Expect = 7e-23
Identities = 56/207 (27%), Positives = 89/207 (42%), Gaps = 20/207 (9%)
Query: 177 PRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSS 236
+ ++TG+ G+G A+AR +G VVV E + AGGS
Sbjct: 1 GKTALVTGAASGIGLAIARALAAAGANVVVNDFGEEGAEAAAKVAGD--------AGGS- 51
Query: 237 KKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEI 296
V + DV + ++ + A EFG +DI +NNAG P+ +F E+
Sbjct: 52 --------VIYLPADVTKEDEIADMIAAAAAEFGGLDILVNNAGIQH-VAPIEEFPPEDW 102
Query: 297 EQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQL 356
++I++ L + R A+ M+ Q G I N+ + G ++P + Y + K GL L
Sbjct: 103 DRIIAVMLTSAFHTIRAALPHMKKQ-GWGRIINI-ASAHGLVASPFKSAYVAAKHGLIGL 160
Query: 357 QASLFKESKRSKVGVHTASPGMVLTDL 383
L E + V+ PG V T L
Sbjct: 161 TKVLALEVAEHGITVNAICPGYVRTPL 187
|
This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. Length = 255 |
| >gnl|CDD|187634 cd08929, SDR_c4, classical (c) SDR, subgroup 4 | Back alignment and domain information |
|---|
Score = 96.4 bits (240), Expect = 9e-23
Identities = 66/246 (26%), Positives = 105/246 (42%), Gaps = 37/246 (15%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
++TG++RG+G+A AR G RV + +R + + E
Sbjct: 3 ALVTGASRGIGEATARLLHAEGYRVGICARDEARLAAAAAQELEG--------------- 47
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQI 299
V G+A DV + ADV++ + FG +D +NNAG KP+ + T EE +
Sbjct: 48 -----VLGLAGDVRDEADVRRAVDAMEEAFGGLDALVNNAGVGV-MKPVEELTPEEWRLV 101
Query: 300 VSTNLVGSILCTREAM-RVMRDQPKGGHIFNMDGAGSGGSSTPLT--AVYGSTKCGLRQL 356
+ TNL G+ C +A ++R GG I N+ GS A Y ++K GL L
Sbjct: 102 LDTNLTGAFYCIHKAAPALLRRG--GGTIVNV---GSLAGKNAFKGGAAYNASKFGLLGL 156
Query: 357 QASLFKESKRSKVGVHTASPGMVLTDLLLSGST------IQNKQMFNIICELPETVARTL 410
+ + + + + V PG V T +GS + + + + E AR L
Sbjct: 157 SEAAMLDLREANIRVVNVMPGSVDTG--FAGSPEGQAWKLAPEDVAQAVLFALEMPARAL 214
Query: 411 VPRIRV 416
V RI +
Sbjct: 215 VSRIEL 220
|
This subgroup has a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 226 |
| >gnl|CDD|236074 PRK07666, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 96.7 bits (241), Expect = 1e-22
Identities = 74/267 (27%), Positives = 118/267 (44%), Gaps = 43/267 (16%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+N +ITG+ RG+G+A+A G V + +R+ E+++ E+E
Sbjct: 8 KNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEA-------------- 53
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
KV DV + +V NE GSIDI INNAG +K F L+ E E
Sbjct: 54 ---YGVKVVIATADVSDYEEVTAAIEQLKNELGSIDILINNAGISK-FGKFLELDPAEWE 109
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG-AGSGGSSTPLTAVYGSTKCGLRQL 356
+I+ NL+G TR + M ++ + G I N+ AG G +T+ Y ++K G+ L
Sbjct: 110 KIIQVNLMGVYYATRAVLPSMIER-QSGDIINISSTAGQKG--AAVTSAYSASKFGVLGL 166
Query: 357 QASLFKESKRSKVGVHTASPGMVLTDLLLS-GSTIQN--KQMFNIICELPETVARTLVPR 413
SL +E ++ + V +P V TD+ + G T N K M PE +A +V +
Sbjct: 167 TESLMQEVRKHNIRVTALTPSTVATDMAVDLGLTDGNPDKVM------QPEDLAEFIVAQ 220
Query: 414 IRVVKGSGKAINYLTPPRILLALVTAW 440
+++ R + W
Sbjct: 221 LKL------------NKRTFIKSAGLW 235
|
Length = 239 |
| >gnl|CDD|187624 cd05366, meso-BDH-like_SDR_c, meso-2,3-butanediol dehydrogenase-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 96.7 bits (241), Expect = 1e-22
Identities = 56/204 (27%), Positives = 97/204 (47%), Gaps = 18/204 (8%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ +ITG+ +G+G+A+A G +V+A + E + + E AG ++
Sbjct: 3 KVAIITGAAQGIGRAIAERLAADGFNIVLADLNLEE---AAKSTIQEISE----AGYNA- 54
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
A A DV + DV+ L + AV +FGS D+ +NNAG PLL T E+++
Sbjct: 55 ----VAVGA----DVTDKDDVEALIDQAVEKFGSFDVMVNNAGIAP-ITPLLTITEEDLK 105
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQ 357
++ + N+ G + + A R + GG I N + +G P Y ++K +R L
Sbjct: 106 KVYAVNVFGVLFGIQAAARQFKKLGHGGKIINA-SSIAGVQGFPNLGAYSASKFAVRGLT 164
Query: 358 ASLFKESKRSKVGVHTASPGMVLT 381
+ +E + V+ +PG+V T
Sbjct: 165 QTAAQELAPKGITVNAYAPGIVKT 188
|
2,3-butanediol dehydrogenases (BDHs) catalyze the NAD+ dependent conversion of 2,3-butanediol to acetonin; BDHs are classified into types according to their stereospecificity as to substrates and products. Included in this subgroup are Klebsiella pneumonia meso-BDH which catalyzes meso-2,3-butanediol to D(-)-acetonin, and Corynebacterium glutamicum L-BDH which catalyzes lX+)-2,3-butanediol to L(+)-acetonin. This subgroup is comprised of classical SDRs with the characteristic catalytic triad and NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 257 |
| >gnl|CDD|187587 cd05326, secoisolariciresinol-DH_like_SDR_c, secoisolariciresinol dehydrogenase (secoisolariciresinol-DH)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 96.4 bits (240), Expect = 2e-22
Identities = 66/234 (28%), Positives = 103/234 (44%), Gaps = 22/234 (9%)
Query: 181 VITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNL 240
+ITG G+G+A AR F G RVV+A ++++ AG + L
Sbjct: 8 IITGGASGIGEATARLFAKHGARVVIA------------DIDD-------DAGQAVAAEL 48
Query: 241 VHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKP-LLQFTNEEIEQI 299
++ + CDV ADV+ + AV FG +DI NNAG +L+ + EE E++
Sbjct: 49 GDPDISFVHCDVTVEADVRAAVDTAVARFGRLDIMFNNAGVLGAPCYSILETSLEEFERV 108
Query: 300 VSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQAS 359
+ N+ G+ L T+ A RVM KG + AG G P Y ++K + L S
Sbjct: 109 LDVNVYGAFLGTKHAARVMIPAKKGSIVSVASVAGVVGGLGP--HAYTASKHAVLGLTRS 166
Query: 360 LFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPR 413
E + V+ SP V T LL +G ++++ + + L P
Sbjct: 167 AATELGEHGIRVNCVSPYGVATPLLTAGFGVEDEAIEEAVRGAANLKGTALRPE 220
|
Podophyllum secoisolariciresinol-DH is a homo tetrameric, classical SDR that catalyzes the NAD-dependent conversion of (-)-secoisolariciresinol to (-)-matairesinol via a (-)-lactol intermediate. (-)-Matairesinol is an intermediate to various 8'-lignans, including the cancer-preventive mammalian lignan, and those involved in vascular plant defense. This subgroup also includes rice momilactone A synthase which catalyzes the conversion of 3beta-hydroxy-9betaH-pimara-7,15-dien-19,6beta-olide into momilactone A, Arabidopsis ABA2 which during abscisic acid (ABA) biosynthesis, catalyzes the conversion of xanthoxin to abscisic aldehyde and, maize Tasselseed2 which participate in the maize sex determination pathway. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 249 |
| >gnl|CDD|181585 PRK08936, PRK08936, glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 95.9 bits (239), Expect = 3e-22
Identities = 66/209 (31%), Positives = 101/209 (48%), Gaps = 32/209 (15%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
VVITG + GLG+A+A F +VV+ RS E E ++ E + AGG +
Sbjct: 10 VVITGGSTGLGRAMAVRFGKEKAKVVINYRSDE-------EEANDVAEEIKKAGGEAIA- 61
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGT-NKGFKPLLQFTNEEIEQ 298
V DV +DV L AV EFG++D+ INNAG N P + + E+ +
Sbjct: 62 -VKG-------DVTVESDVVNLIQTAVKEFGTLDVMINNAGIENA--VPSHEMSLEDWNK 111
Query: 299 IVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSST------PLTAVYGSTKCG 352
+++TNL G+ L +REA++ + G+I NM SS PL Y ++K G
Sbjct: 112 VINTNLTGAFLGSREAIKYFVEHDIKGNIINM-------SSVHEQIPWPLFVHYAASKGG 164
Query: 353 LRQLQASLFKESKRSKVGVHTASPGMVLT 381
++ + +L E + V+ PG + T
Sbjct: 165 VKLMTETLAMEYAPKGIRVNNIGPGAINT 193
|
Length = 261 |
| >gnl|CDD|187585 cd05324, carb_red_PTCR-like_SDR_c, Porcine testicular carbonyl reductase (PTCR)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 94.2 bits (235), Expect = 4e-22
Identities = 56/208 (26%), Positives = 95/208 (45%), Gaps = 26/208 (12%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGD-RVVVASRSSESVRMTVTELEENLKEGMMAAGGSS 236
+ ++TG+ RG+G + R+ SG V++ +R E + V +L
Sbjct: 1 KVALVTGANRGIGFEIVRQLAKSGPGTVILTARDVERGQAAVEKLRAE------------ 48
Query: 237 KKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGT-NKGFKPLLQFTNEE 295
V DV + A ++ ++F ++G +DI +NNAG KGF E+
Sbjct: 49 -----GLSVRFHQLDVTDDASIEAAADFVEEKYGGLDILVNNAGIAFKGFDDSTPTR-EQ 102
Query: 296 IEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQ 355
+ + TN G++ T+ + +++ + G I N+ SG S LT+ YG +K L
Sbjct: 103 ARETMKTNFFGTVDVTQALLPLLK-KSPAGRIVNV---SSGLGS--LTSAYGVSKAALNA 156
Query: 356 LQASLFKESKRSKVGVHTASPGMVLTDL 383
L L KE K + + V+ PG V TD+
Sbjct: 157 LTRILAKELKETGIKVNACCPGWVKTDM 184
|
PTCR is a classical SDR which catalyzes the NADPH-dependent reduction of ketones on steroids and prostaglandins. Unlike most SDRs, PTCR functions as a monomer. This subgroup also includes human carbonyl reductase 1 (CBR1) and CBR3. CBR1 is an NADPH-dependent SDR with broad substrate specificity and may be responsible for the in vivo reduction of quinones, prostaglandins, and other carbonyl-containing compounds. In addition it includes poppy NADPH-dependent salutaridine reductase which catalyzes the stereospecific reduction of salutaridine to 7(S)-salutaridinol in the biosynthesis of morphine, and Arabidopsis SDR1,a menthone reductase, which catalyzes the reduction of menthone to neomenthol, a compound with antimicrobial activity; SDR1 can also carry out neomenthol oxidation. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 225 |
| >gnl|CDD|168574 PRK06484, PRK06484, short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 98.8 bits (246), Expect = 5e-22
Identities = 65/209 (31%), Positives = 102/209 (48%), Gaps = 22/209 (10%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
R V++TG+ G+G+A + F +GD+VVVA R+ E R E ++L A
Sbjct: 6 RVVLVTGAAGGIGRAACQRFARAGDQVVVADRNVERAR----ERADSLGPDHHA------ 55
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAG-TNKGFKPLLQFTNEEI 296
+A DV + A +++ EFG ID+ +NNAG T+ L T EE
Sbjct: 56 ----------LAMDVSDEAQIREGFEQLHREFGRIDVLVNNAGVTDPTMTATLDTTLEEF 105
Query: 297 EQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQL 356
++ + NL G+ L REA+R+M +Q G I N+ +G+G + P Y ++K + L
Sbjct: 106 ARLQAINLTGAYLVAREALRLMIEQGHGAAIVNV-ASGAGLVALPKRTAYSASKAAVISL 164
Query: 357 QASLFKESKRSKVGVHTASPGMVLTDLLL 385
SL E + V+ PG V T ++
Sbjct: 165 TRSLACEWAAKGIRVNAVLPGYVRTQMVA 193
|
Length = 520 |
| >gnl|CDD|212493 cd08932, HetN_like_SDR_c, HetN oxidoreductase-like, classical (c) SDR | Back alignment and domain information |
|---|
Score = 94.0 bits (234), Expect = 7e-22
Identities = 52/215 (24%), Positives = 91/215 (42%), Gaps = 24/215 (11%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ ++TG++RG+G +AR G RV + R+ E + A+GG
Sbjct: 1 KVALVTGASRGIGIEIARALARDGYRVSLGLRNPEDLAALS------------ASGG--- 45
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
V + D +P D + L + + FG ID+ ++NAG L + ++ E+E
Sbjct: 46 ------DVEAVPYDARDPEDARALVDALRDRFGRIDVLVHNAGIG-RPTTLREGSDAELE 98
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQ 357
S N++ TR + +R+ G + ++ + SG A Y ++K LR L
Sbjct: 99 AHFSINVIAPAELTRALLPALREAGS-GRVVFLN-SLSGKRVLAGNAGYSASKFALRALA 156
Query: 358 ASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQN 392
+L +E V V PG V T + + +
Sbjct: 157 HALRQEGWDHGVRVSAVCPGFVDTPMAQGLTLVGA 191
|
This subgroup includes Anabaena sp. strain PCC 7120 HetN, a putative oxidoreductase involved in heterocyst differentiation, and related proteins. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 223 |
| >gnl|CDD|235693 PRK06077, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 94.4 bits (235), Expect = 8e-22
Identities = 61/205 (29%), Positives = 99/205 (48%), Gaps = 24/205 (11%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVV-ASRSSESVRMTVTELEENLKEGMMAAGGSSKK 238
VV+TGS RG+G+A+A G VVV A + +E + T+ ++EN EG+
Sbjct: 9 VVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRAEEMNETLKMVKENGGEGI--------- 59
Query: 239 NLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQ 298
G+ DV + L+ ++ +G DI +NNAG F P L ++ I++
Sbjct: 60 --------GVLADVSTREGCETLAKATIDRYGVADILVNNAGLGL-FSPFLNVDDKLIDK 110
Query: 299 IVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQA 358
+ST+ I C++E + MR+ GG I N+ + +G ++YG+ K + L
Sbjct: 111 HISTDFKSVIYCSQELAKEMRE---GGAIVNI-ASVAGIRPAYGLSIYGAMKAAVINLTK 166
Query: 359 SLFKESKRSKVGVHTASPGMVLTDL 383
L E K+ V+ +PG V T L
Sbjct: 167 YLALELA-PKIRVNAIAPGFVKTKL 190
|
Length = 252 |
| >gnl|CDD|187627 cd05369, TER_DECR_SDR_a, Trans-2-enoyl-CoA reductase (TER) and 2,4-dienoyl-CoA reductase (DECR), atypical (a) SDR | Back alignment and domain information |
|---|
Score = 94.2 bits (235), Expect = 9e-22
Identities = 55/208 (26%), Positives = 83/208 (39%), Gaps = 38/208 (18%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
ITG G+GKA+A+ F G V +A R E + E+ +A G
Sbjct: 6 AFITGGGTGIGKAIAKAFAELGASVAIAGRKPEVLEAAAEEIS--------SATG----- 52
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTN----------KGFKPLL 289
+ I CDV +P V+ + + EFG IDI INNA N GFK
Sbjct: 53 ---GRAHPIQCDVRDPEAVEAAVDETLKEFGKIDILINNAAGNFLAPAESLSPNGFK--- 106
Query: 290 QFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGST 349
++ +L G+ T+ + + + GG I N+ A + +P +
Sbjct: 107 --------TVIDIDLNGTFNTTKAVGKRLIEAKHGGSILNI-SATYAYTGSPFQVHSAAA 157
Query: 350 KCGLRQLQASLFKESKRSKVGVHTASPG 377
K G+ L SL E + V+ +PG
Sbjct: 158 KAGVDALTRSLAVEWGPYGIRVNAIAPG 185
|
TTER is a peroxisomal protein with a proposed role in fatty acid elongation. Fatty acid synthesis is known to occur in the both endoplasmic reticulum and mitochondria; peroxisomal TER has been proposed as an additional fatty acid elongation system, it reduces the double bond at C-2 as the last step of elongation. This system resembles the mitochondrial system in that acetyl-CoA is used as a carbon donor. TER may also function in phytol metabolism, reducting phytenoyl-CoA to phytanoyl-CoA in peroxisomes. DECR processes double bonds in fatty acids to increase their utility in fatty acid metabolism; it reduces 2,4-dienoyl-CoA to an enoyl-CoA. DECR is active in mitochondria and peroxisomes. This subgroup has the Gly-rich NAD-binding motif of the classical SDR family, but does not display strong identity to the canonical active site tetrad, and lacks the characteristic Tyr at the usual position. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 249 |
| >gnl|CDD|187605 cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 93.2 bits (232), Expect = 2e-21
Identities = 53/207 (25%), Positives = 87/207 (42%), Gaps = 24/207 (11%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ ++TG++RG+G +A +G +V+ SR+ E +E KEG+
Sbjct: 6 KVALVTGASRGIGFGIASGLAEAGANIVINSRNEEKAEEAQQLIE---KEGV-------- 54
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
+ CDV + ++ +FG IDI +NNAG + P +F E
Sbjct: 55 ------EATAFTCDVSDEEAIKAAVEAIEEDFGKIDILVNNAGIIR-RHPAEEFPEAEWR 107
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGS--STPLTAVYGSTKCGLRQ 355
++ NL G ++ R M Q G I N+ S S P Y ++K G+
Sbjct: 108 DVIDVNLNGVFFVSQAVARHMIKQ-GHGKIINI---CSLLSELGGPPVPAYAASKGGVAG 163
Query: 356 LQASLFKESKRSKVGVHTASPGMVLTD 382
L +L E R + V+ +PG T+
Sbjct: 164 LTKALATEWARHGIQVNAIAPGYFATE 190
|
Ga5DH catalyzes the NADP-dependent conversion of carbon source D-gluconate and 5-keto-D-gluconate. This SDR subgroup has a classical Gly-rich NAD(P)-binding motif and a conserved active site tetrad pattern. However, it has been proposed that Arg104 (Streptococcus suis Ga5DH numbering), as well as an active site Ca2+, play a critical role in catalysis. In addition to Ga5DHs this subgroup contains Erwinia chrysanthemi KduD which is involved in pectin degradation, and is a putative 2,5-diketo-3-deoxygluconate dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107,15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 248 |
| >gnl|CDD|135631 PRK05867, PRK05867, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 92.8 bits (230), Expect = 3e-21
Identities = 55/208 (26%), Positives = 98/208 (47%), Gaps = 19/208 (9%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ +ITG++ G+GK +A ++ +G +V +A+R +++ E+ G
Sbjct: 10 KRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEI---------GTSG--- 57
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
KV + CDV + V + + E G IDI + NAG P+L EE +
Sbjct: 58 -----GKVVPVCCDVSQHQQVTSMLDQVTAELGGIDIAVCNAGI-ITVTPMLDMPLEEFQ 111
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTP-LTAVYGSTKCGLRQL 356
++ +TN+ G L + A + M Q +GG I N + P + Y ++K + L
Sbjct: 112 RLQNTNVTGVFLTAQAAAKAMVKQGQGGVIINTASMSGHIINVPQQVSHYCASKAAVIHL 171
Query: 357 QASLFKESKRSKVGVHTASPGMVLTDLL 384
++ E K+ V++ SPG +LT+L+
Sbjct: 172 TKAMAVELAPHKIRVNSVSPGYILTELV 199
|
Length = 253 |
| >gnl|CDD|181334 PRK08263, PRK08263, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 93.2 bits (232), Expect = 3e-21
Identities = 58/209 (27%), Positives = 95/209 (45%), Gaps = 23/209 (11%)
Query: 182 ITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLV 241
ITG++RG G+A L GDRVV +R + T+ +L E +
Sbjct: 8 ITGASRGFGRAWTEAALERGDRVVATARDTA----TLADLAEKYGD-------------- 49
Query: 242 HAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVS 301
++ +A DV + A V AV FG +DI +NNAG F + + T E +
Sbjct: 50 --RLLPLALDVTDRAAVFAAVETAVEHFGRLDIVVNNAGYGL-FGMIEEVTESEARAQID 106
Query: 302 TNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLF 361
TN G++ T+ + +R+Q + GHI + G G S+ P++ +Y ++K L + +L
Sbjct: 107 TNFFGALWVTQAVLPYLREQ-RSGHIIQISSIG-GISAFPMSGIYHASKWALEGMSEALA 164
Query: 362 KESKRSKVGVHTASPGMVLTDLLLSGSTI 390
+E + V PG TD + +
Sbjct: 165 QEVAEFGIKVTLVEPGGYSTDWAGTSAKR 193
|
Length = 275 |
| >gnl|CDD|236110 PRK07831, PRK07831, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 92.0 bits (229), Expect = 7e-21
Identities = 48/154 (31%), Positives = 72/154 (46%), Gaps = 17/154 (11%)
Query: 178 RNVVITGST-RGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSS 236
+ V++T + G+G A AR L G RVV++ + T EL L G
Sbjct: 18 KVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELGLG-------- 69
Query: 237 KKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEI 296
+V + CDV A V L + AV G +D+ +NNAG G P++ T++E
Sbjct: 70 -------RVEAVVCDVTSEAQVDALIDAAVERLGRLDVLVNNAGLG-GQTPVVDMTDDEW 121
Query: 297 EQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNM 330
+++ L G+ TR A+R MR + GG I N
Sbjct: 122 SRVLDVTLTGTFRATRAALRYMRARGHGGVIVNN 155
|
Length = 262 |
| >gnl|CDD|187614 cd05356, 17beta-HSD1_like_SDR_c, 17-beta-hydroxysteroid dehydrogenases (17beta-HSDs) types -1, -3, and -12, -like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 91.1 bits (227), Expect = 8e-21
Identities = 54/206 (26%), Positives = 92/206 (44%), Gaps = 22/206 (10%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
V+TG+T G+GKA A E G V++ SR+ E + E+EE
Sbjct: 4 AVVTGATDGIGKAYAEELAKRGFNVILISRTQEKLDAVAKEIEEKYG------------- 50
Query: 240 LVHAKVAGIACDVC-EPADVQKLSNFAVNEFGSIDIWINNAGTNKGF-KPLLQFTNEEIE 297
V K IA D +++ I I +NN G + + L+ +E++
Sbjct: 51 -VETKT--IAADFSAGDDIYERIEKELEGL--DIGILVNNVGISHSIPEYFLETPEDELQ 105
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQ 357
I++ N++ ++ TR + M + KG I N+ + +G TPL A Y ++K L
Sbjct: 106 DIINVNVMATLKMTRLILPGMVKRKKGA-IVNI-SSFAGLIPTPLLATYSASKAFLDFFS 163
Query: 358 ASLFKESKRSKVGVHTASPGMVLTDL 383
+L++E K + V + P +V T +
Sbjct: 164 RALYEEYKSQGIDVQSLLPYLVATKM 189
|
This subgroup includes various 17-beta-hydroxysteroid dehydrogenases and 3-ketoacyl-CoA reductase, these are members of the SDR family, and contain the canonical active site tetrad and glycine-rich NAD-binding motif of the classical SDRs. 3-ketoacyl-CoA reductase (KAR, aka 17beta-HSD type 12, encoded by HSD17B12) acts in fatty acid elongation; 17beta- hydroxysteroid dehydrogenases are isozymes that catalyze activation and inactivation of estrogen and androgens, and include members of the SDR family. 17beta-estradiol dehydrogenase (aka 17beta-HSD type 1, encoded by HSD17B1) converts estrone to estradiol. Estradiol is the predominant female sex hormone. 17beta-HSD type 3 (aka testosterone 17-beta-dehydrogenase 3, encoded by HSD17B3) catalyses the reduction of androstenedione to testosterone, it also accepts estrogens as substrates. This subgroup also contains a putative steroid dehydrogenase let-767 from Caenorhabditis elegans, mutation in which results in hypersensitivity to cholesterol limitation. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 239 |
| >gnl|CDD|180576 PRK06463, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 91.4 bits (227), Expect = 8e-21
Identities = 64/212 (30%), Positives = 96/212 (45%), Gaps = 24/212 (11%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ +ITG TRG+G+A+A FL G +V V S+E +
Sbjct: 8 KVALITGGTRGIGRAIAEAFLREGAKVAVLYNSAE----------------------NEA 45
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
K L V I CDV V+K EFG +D+ +NNAG P +F E+
Sbjct: 46 KELREKGVFTIKCDVGNRDQVKKSKEVVEKEFGRVDVLVNNAGIMY-LMPFEEFDEEKYN 104
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQ 357
+++ NL G+I T E + +++ K G I N+ G++ T Y TK G+ L
Sbjct: 105 KMIKINLNGAIYTTYEFLPLLKLS-KNGAIVNIASNAGIGTAAEGTTFYAITKAGIIILT 163
Query: 358 ASLFKESKRSKVGVHTASPGMVLTDLLLSGST 389
L E + + V+ +PG V TD+ LSG +
Sbjct: 164 RRLAFELGKYGIRVNAVAPGWVETDMTLSGKS 195
|
Length = 255 |
| >gnl|CDD|168574 PRK06484, PRK06484, short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 94.5 bits (235), Expect = 1e-20
Identities = 67/240 (27%), Positives = 111/240 (46%), Gaps = 31/240 (12%)
Query: 177 PRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSS 236
PR V ITG RG+G+A+A F +GDR+++ R +E + L E A G
Sbjct: 269 PRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGA--------KKLAE---ALGD-- 315
Query: 237 KKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEI 296
++L + D+ + A V+ +G +D+ +NNAG + FKP L+ + E+
Sbjct: 316 -EHLS------VQADITDEAAVESAFAQIQARWGRLDVLVNNAGIAEVFKPSLEQSAEDF 368
Query: 297 EQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQL 356
++ NL G+ C R A R+M +GG I N+ G+ + + P Y ++K + L
Sbjct: 369 TRVYDVNLSGAFACARAAARLMS---QGGVIVNL-GSIASLLALPPRNAYCASKAAVTML 424
Query: 357 QASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELP-------ETVART 409
SL E + + V+T +PG + T +L+ +I +P E VA
Sbjct: 425 SRSLACEWAPAGIRVNTVAPGYIETPAVLALKASGRADFDSIRRRIPLGRLGDPEEVAEA 484
|
Length = 520 |
| >gnl|CDD|235925 PRK07067, PRK07067, sorbitol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 89.7 bits (223), Expect = 3e-20
Identities = 52/205 (25%), Positives = 86/205 (41%), Gaps = 28/205 (13%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ ++TG+ G+G+A+A +L G RVV+A R+ E+
Sbjct: 7 KVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLAALEIG--------------- 51
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGF--KPLLQFTNEE 295
++ DV + ++ AV FG IDI NNA F P+L + +
Sbjct: 52 -----PAAIAVSLDVTRQDSIDRIVAAAVERFGGIDILFNNAAL---FDMAPILDISRDS 103
Query: 296 IEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG-AGSGGSSTPLTAVYGSTKCGLR 354
+++ + N+ G + R M +Q +GG I NM AG G L + Y +TK +
Sbjct: 104 YDRLFAVNVKGLFFLMQAVARHMVEQGRGGKIINMASQAGRRGE--ALVSHYCATKAAVI 161
Query: 355 QLQASLFKESKRSKVGVHTASPGMV 379
S R + V+ +PG+V
Sbjct: 162 SYTQSAALALIRHGINVNAIAPGVV 186
|
Length = 257 |
| >gnl|CDD|187625 cd05367, SPR-like_SDR_c, sepiapterin reductase (SPR)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 89.3 bits (222), Expect = 4e-20
Identities = 61/262 (23%), Positives = 103/262 (39%), Gaps = 41/262 (15%)
Query: 180 VVITGSTRGLGKALAREFLLSGD--RVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+++TG++RG+G+ALA E L G VV+ +RS E ++ EL L+
Sbjct: 2 IILTGASRGIGRALAEELLKRGSPSVVVLLARSEEPLQELKEELRPGLR----------- 50
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
V + D+ + A V++L G D+ INNAG+ + +E++
Sbjct: 51 -------VTTVKADLSDAAGVEQLLEAIRKLDGERDLLINNAGSLGPVSKIEFIDLDELQ 103
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLT--AVYGSTKCGLRQ 355
+ NL + T +R + + + N+ SG + P +Y S+K
Sbjct: 104 KYFDLNLTSPVCLTSTLLRAFKKRGLKKTVVNVS---SGAAVNPFKGWGLYCSSKAARDM 160
Query: 356 LQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPRIR 415
L E V V + +PG+V TD M I E + R R
Sbjct: 161 FFRVLAAEEP--DVRVLSYAPGVVDTD------------MQREIRE--TSADPETRSRFR 204
Query: 416 VVKGSGKAINYLTPPRILLALV 437
+K G+ ++ L L+
Sbjct: 205 SLKEKGELLDPEQSAEKLANLL 226
|
Human SPR, a member of the SDR family, catalyzes the NADP-dependent reduction of sepiaptern to 7,8-dihydrobiopterin (BH2). In addition to SPRs, this subgroup also contains Bacillus cereus yueD, a benzil reductase, which catalyzes the stereospecific reduction of benzil to (S)-benzoin. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 241 |
| >gnl|CDD|235702 PRK06124, PRK06124, gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 88.6 bits (220), Expect = 7e-20
Identities = 55/205 (26%), Positives = 92/205 (44%), Gaps = 20/205 (9%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ ++TGS RGLG +AR +G V+V R++ ++ V L AAGG++
Sbjct: 12 QVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALR--------AAGGAA- 62
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
+A D+ + V E G +DI +NN G + +PL + + I
Sbjct: 63 --------EALAFDIADEEAVAAAFARIDAEHGRLDILVNNVGA-RDRRPLAELDDAAIR 113
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQ 357
++ T+LV IL +R A + M+ + G I + +G + AVY + K GL L
Sbjct: 114 ALLETDLVAPILLSRLAAQRMK-RQGYGRIIAITSI-AGQVARAGDAVYPAAKQGLTGLM 171
Query: 358 ASLFKESKRSKVGVHTASPGMVLTD 382
+L E + + +PG T+
Sbjct: 172 RALAAEFGPHGITSNAIAPGYFATE 196
|
Length = 256 |
| >gnl|CDD|187602 cd05344, BKR_like_SDR_like, putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR)-like, SDR | Back alignment and domain information |
|---|
Score = 88.5 bits (220), Expect = 8e-20
Identities = 49/205 (23%), Positives = 88/205 (42%), Gaps = 20/205 (9%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ ++T ++ G+G A+AR G RV + +R+ E E + A G
Sbjct: 2 KVALVTAASSGIGLAIARALAREGARVAICARNR--------ENLERAASELRAGGAG-- 51
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
V + D+ +P D+ +L A + FG +DI +NNAG P + T+E+
Sbjct: 52 -------VLAVVADLTDPEDIDRLVEKAGDAFGRVDILVNNAGGPPP-GPFAELTDEDWL 103
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQ 357
+ L+ I R + M+++ G I N+ + + P + + GL L
Sbjct: 104 EAFDLKLLSVIRIVRAVLPGMKER-GWGRIVNI-SSLTVKEPEPNLVLSNVARAGLIGLV 161
Query: 358 ASLFKESKRSKVGVHTASPGMVLTD 382
+L +E V V++ PG + T+
Sbjct: 162 KTLSRELAPDGVTVNSVLPGYIDTE 186
|
This subgroup resembles the SDR family, but does not have a perfect match to the NAD-binding motif or the catalytic tetrad characteristic of the SDRs. It includes the SDRs, Q9HYA2 from Pseudomonas aeruginosa PAO1 and APE0912 from Aeropyrum pernix K1. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 253 |
| >gnl|CDD|236094 PRK07774, PRK07774, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 88.6 bits (220), Expect = 8e-20
Identities = 55/204 (26%), Positives = 93/204 (45%), Gaps = 24/204 (11%)
Query: 181 VITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNL 240
++TG+ G+G+A A G VVVA ++E ++ +A GG++
Sbjct: 10 IVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQI--------VADGGTA---- 57
Query: 241 VHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKP--LLQFTNEEIEQ 298
+ +V DV +P + +++ V+ FG ID +NNA G K L+ + ++
Sbjct: 58 IAVQV-----DVSDPDSAKAMADATVSAFGGIDYLVNNAAIYGGMKLDLLITVPWDYYKK 112
Query: 299 IVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQA 358
+S NL G+++CTR + M + GG I N + S YG K GL L
Sbjct: 113 FMSVNLDGALVCTRAVYKHMAKR-GGGAIVNQSSTAAWLYSNF----YGLAKVGLNGLTQ 167
Query: 359 SLFKESKRSKVGVHTASPGMVLTD 382
L +E + V+ +PG + T+
Sbjct: 168 QLARELGGMNIRVNAIAPGPIDTE 191
|
Length = 250 |
| >gnl|CDD|180440 PRK06172, PRK06172, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 88.3 bits (219), Expect = 1e-19
Identities = 58/205 (28%), Positives = 91/205 (44%), Gaps = 21/205 (10%)
Query: 181 VITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNL 240
++TG G+G+A A F G +VVVA R + TV + E AGG +
Sbjct: 11 LVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIRE--------AGGEA---- 58
Query: 241 VHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIV 300
+ACDV A+V+ L + +G +D NNAG L + + E + I+
Sbjct: 59 -----LFVACDVTRDAEVKALVEQTIAAYGRLDYAFNNAGIEIEQGRLAEGSEAEFDAIM 113
Query: 301 STNLVGSILCTREAMRVMRDQPKGGHIFNM-DGAGSGGSSTPLTAVYGSTKCGLRQLQAS 359
N+ G LC + + +M Q GG I N AG G P ++Y ++K + L S
Sbjct: 114 GVNVKGVWLCMKYQIPLMLAQ-GGGAIVNTASVAGLGA--APKMSIYAASKHAVIGLTKS 170
Query: 360 LFKESKRSKVGVHTASPGMVLTDLL 384
E + + V+ P ++ TD+
Sbjct: 171 AAIEYAKKGIRVNAVCPAVIDTDMF 195
|
Length = 253 |
| >gnl|CDD|187621 cd05363, SDH_SDR_c, Sorbitol dehydrogenase (SDH), classical (c) SDR | Back alignment and domain information |
|---|
Score = 88.1 bits (218), Expect = 1e-19
Identities = 56/202 (27%), Positives = 93/202 (46%), Gaps = 22/202 (10%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ +ITGS RG+G+A A+ ++ G RV +A + E+ R T E+
Sbjct: 4 KTALITGSARGIGRAFAQAYVREGARVAIADINLEAARATAAEIGPA------------- 50
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
I+ DV + A + + V+ +GSIDI +NNA P++ T E +
Sbjct: 51 -------ACAISLDVTDQASIDRCVAALVDRWGSIDILVNNAALFD-LAPIVDITRESYD 102
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQ 357
++ + N+ G++ + R M Q +GG I NM + +G L VY +TK + L
Sbjct: 103 RLFAINVSGTLFMMQAVARAMIAQGRGGKIINM-ASQAGRRGEALVGVYCATKAAVISLT 161
Query: 358 ASLFKESKRSKVGVHTASPGMV 379
S R + V+ +PG+V
Sbjct: 162 QSAGLNLIRHGINVNAIAPGVV 183
|
This bacterial subgroup includes Rhodobacter sphaeroides SDH, and other SDHs. SDH preferentially interconverts D-sorbitol (D-glucitol) and D-fructose, but also interconverts L-iditol/L-sorbose and galactitol/D-tagatose. SDH is NAD-dependent and is a dimeric member of the SDR family. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 254 |
| >gnl|CDD|181721 PRK09242, PRK09242, tropinone reductase; Provisional | Back alignment and domain information |
|---|
Score = 87.5 bits (217), Expect = 2e-19
Identities = 58/206 (28%), Positives = 100/206 (48%), Gaps = 18/206 (8%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ +ITG+++G+G A+AREFL G V++ +R ++++ EL E E
Sbjct: 10 QTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPER--------- 60
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
+V G+A DV + D + + ++ + + + I +NNAG N K + +T +E
Sbjct: 61 ------EVHGLAADVSDDEDRRAILDWVEDHWDGLHILVNNAGGNIR-KAAIDYTEDEWR 113
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQ 357
I TNL + +R A +++ Q I N+ G+ SG + A YG TK L Q+
Sbjct: 114 GIFETNLFSAFELSRYAHPLLK-QHASSAIVNI-GSVSGLTHVRSGAPYGMTKAALLQMT 171
Query: 358 ASLFKESKRSKVGVHTASPGMVLTDL 383
+L E + V+ +P + T L
Sbjct: 172 RNLAVEWAEDGIRVNAVAPWYIRTPL 197
|
Length = 257 |
| >gnl|CDD|187649 cd08945, PKR_SDR_c, Polyketide ketoreductase, classical (c) SDR | Back alignment and domain information |
|---|
Score = 87.6 bits (217), Expect = 2e-19
Identities = 61/206 (29%), Positives = 92/206 (44%), Gaps = 22/206 (10%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
++TG+T G+G A+AR G RV V +R E + TV EL E G
Sbjct: 4 EVALVTGATSGIGLAIARRLGKEGLRVFVCARGEEGLATTVKELRE---AG--------- 51
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
+ G CDV +++ L AV +G ID+ +NNAG + G + +E
Sbjct: 52 -----VEADGRTCDVRSVPEIEALVAAAVARYGPIDVLVNNAGRSGG-GATAELADELWL 105
Query: 298 QIVSTNLVGSILCTREAMRV--MRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQ 355
+V TNL G T+E ++ M ++ G I N+ G G A Y ++K G+
Sbjct: 106 DVVETNLTGVFRVTKEVLKAGGMLERGT-GRIINIASTG-GKQGVVHAAPYSASKHGVVG 163
Query: 356 LQASLFKESKRSKVGVHTASPGMVLT 381
+L E R+ + V+ PG V T
Sbjct: 164 FTKALGLELARTGITVNAVCPGFVET 189
|
Polyketide ketoreductase (KR) is a classical SDR with a characteristic NAD-binding pattern and active site tetrad. Aromatic polyketides include various aromatic compounds of pharmaceutical interest. Polyketide KR, part of the type II polyketide synthase (PKS) complex, is comprised of stand-alone domains that resemble the domains found in fatty acid synthase and multidomain type I PKS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 258 |
| >gnl|CDD|187608 cd05350, SDR_c6, classical (c) SDR, subgroup 6 | Back alignment and domain information |
|---|
Score = 87.0 bits (216), Expect = 2e-19
Identities = 69/268 (25%), Positives = 108/268 (40%), Gaps = 35/268 (13%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
V+ITG++ G+G+ALAREF +G V +A+R ++ + EL
Sbjct: 1 VLITGASSGIGRALAREFAKAGYNVALAARRTDRLDELKAELLN------PNPS------ 48
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPL-LQFTNEEIEQ 298
V DV + Q + E G +D+ I NAG KG L F + +
Sbjct: 49 -----VEVEILDVTDEERNQLVIAELEAELGGLDLVIINAGVGKGTSLGDLSF--KAFRE 101
Query: 299 IVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQA 358
+ TNL+G+ A+ R + GH+ + + + P A Y ++K L L
Sbjct: 102 TIDTNLLGAAAILEAALPQFRAK-GRGHLVLI-SSVAALRGLPGAAAYSASKAALSSLAE 159
Query: 359 SLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPRIRVVK 418
SL + K+ + V +PG + T L T M ++ E A+ + I K
Sbjct: 160 SLRYDVKKRGIRVTVINPGFIDTPL-----TANMFTMPFLMS--VEQAAKRIYKAI---K 209
Query: 419 GSGKAINY---LTPPRILLALVTAWLRR 443
+ L P LL L+ LRR
Sbjct: 210 KGAAEPTFPWRLAVPLRLLKLLPERLRR 237
|
These proteins are members of the classical SDR family, with a canonical active site tetrad and a fairly well conserved typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 239 |
| >gnl|CDD|171821 PRK12937, PRK12937, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 86.3 bits (214), Expect = 4e-19
Identities = 58/209 (27%), Positives = 94/209 (44%), Gaps = 21/209 (10%)
Query: 181 VITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNL 240
++TG++RG+G A+AR G V V S + + L + AAGG
Sbjct: 9 IVTGASRGIGAAIARRLAADGFAVAVNYAGSAAA-------ADELVAEIEAAGG------ 55
Query: 241 VHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIV 300
+ + DV + A V +L + A FG ID+ +NNAG + F E+ ++ +
Sbjct: 56 ---RAIAVQADVADAAAVTRLFDAAETAFGRIDVLVNNAGV-MPLGTIADFDLEDFDRTI 111
Query: 301 STNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASL 360
+TNL G+ + REA R + GG I N+ P Y ++K + L L
Sbjct: 112 ATNLRGAFVVLREAARHLGQ---GGRIINLS-TSVIALPLPGYGPYAASKAAVEGLVHVL 167
Query: 361 FKESKRSKVGVHTASPGMVLTDLLLSGST 389
E + + V+ +PG V T+L +G +
Sbjct: 168 ANELRGRGITVNAVAPGPVATELFFNGKS 196
|
Length = 245 |
| >gnl|CDD|184025 PRK13394, PRK13394, 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 86.9 bits (215), Expect = 4e-19
Identities = 56/204 (27%), Positives = 94/204 (46%), Gaps = 19/204 (9%)
Query: 181 VITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNL 240
V+TG+ G+GK +A E +G V +A + + E+ AGG
Sbjct: 11 VVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEIN--------KAGG------ 56
Query: 241 VHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIV 300
K G+A DV V + FGS+DI ++NAG + P+ ++ + +++
Sbjct: 57 ---KAIGVAMDVTNEDAVNAGIDKVAERFGSVDILVSNAGI-QIVNPIENYSFADWKKMQ 112
Query: 301 STNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASL 360
+ ++ G+ L T+ A++ M +GG + M G+ ++PL + Y + K GL L L
Sbjct: 113 AIHVDGAFLTTKAALKHMYKDDRGGVVIYM-GSVHSHEASPLKSAYVTAKHGLLGLARVL 171
Query: 361 FKESKRSKVGVHTASPGMVLTDLL 384
KE + V H PG V T L+
Sbjct: 172 AKEGAKHNVRSHVVCPGFVRTPLV 195
|
Length = 262 |
| >gnl|CDD|187584 cd05323, ADH_SDR_c_like, insect type alcohol dehydrogenase (ADH)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 85.4 bits (212), Expect = 8e-19
Identities = 64/240 (26%), Positives = 95/240 (39%), Gaps = 26/240 (10%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ +ITG G+G A A+ L G +V + R +E+ EL+ +
Sbjct: 1 KVAIITGGASGIGLATAKLLLKKGAKVAILDR-NENPGAA-AELQAINPKV--------- 49
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEE-- 295
K + CDV + A+ +FG +DI INNAG K L
Sbjct: 50 ------KATFVQCDVTSWEQLAAAFKKAIEKFGRVDILINNAGILDE-KSYLFAGKLPPP 102
Query: 296 IEQIVSTNLVGSILCTREAMRVMR--DQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGL 353
E+ + NL G I T A+ M KGG I N+ G P VY ++K G+
Sbjct: 103 WEKTIDVNLTGVINTTYLALHYMDKNKGGKGGVIVNIGSVA-GLYPAPQFPVYSASKHGV 161
Query: 354 RQLQASLFKESK-RSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNI-ICELPETVARTLV 411
SL + ++ V V+ PG T LL + +M + PE VA+ +V
Sbjct: 162 VGFTRSLADLLEYKTGVRVNAICPGFTNTP-LLPDLVAKEAEMLPSAPTQSPEVVAKAIV 220
|
This subgroup contains insect type ADH, and 15-hydroxyprostaglandin dehydrogenase (15-PGDH) type I; these proteins are classical SDRs. ADH catalyzes the NAD+-dependent oxidation of alcohols to aldehydes/ketones. This subgroup is distinct from the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase/reductase family, and evolved in fruit flies to allow the digestion of fermenting fruit. 15-PGDH catalyzes the NAD-dependent interconversion of (5Z,13E)-(15S)-11alpha,15-dihydroxy-9-oxoprost-13-enoate and (5Z,13E)-11alpha-hydroxy-9,15-dioxoprost-13-enoate, and has a typical SDR glycine-rich NAD-binding motif, which is not fully present in ADH. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 244 |
| >gnl|CDD|235628 PRK05855, PRK05855, short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 88.9 bits (221), Expect = 1e-18
Identities = 56/203 (27%), Positives = 85/203 (41%), Gaps = 19/203 (9%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
VV+TG+ G+G+ A F G VV + + T + AAG
Sbjct: 318 VVVTGAGSGIGRETALAFAREGAEVVASDIDEAAAERTAELIR--------AAGAV---- 365
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQI 299
HA DV + ++ + + E G DI +NNAG L + E+ +++
Sbjct: 366 -AHAYR----VDVSDADAMEAFAEWVRAEHGVPDIVVNNAGIGMA-GGFLDTSAEDWDRV 419
Query: 300 VSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQAS 359
+ NL G I R R M ++ GGHI N+ A + S L A Y ++K + L
Sbjct: 420 LDVNLWGVIHGCRLFGRQMVERGTGGHIVNVASAAAYAPSRSLPA-YATSKAAVLMLSEC 478
Query: 360 LFKESKRSKVGVHTASPGMVLTD 382
L E + +GV PG V T+
Sbjct: 479 LRAELAAAGIGVTAICPGFVDTN 501
|
Length = 582 |
| >gnl|CDD|215720 pfam00106, adh_short, short chain dehydrogenase | Back alignment and domain information |
|---|
Score = 83.0 bits (206), Expect = 1e-18
Identities = 47/178 (26%), Positives = 68/178 (38%), Gaps = 23/178 (12%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVV-ASRSSESVRMTVTELEENLKEGMMAAGGSSKK 238
V+ITG T GLG ALAR G R +V SR L + A G
Sbjct: 3 VLITGGTGGLGLALARWLAAEGARHLVLVSRRGP------APGAAELVAELEALG----- 51
Query: 239 NLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQ 298
A+V ACDV + + L G +D ++NAG PL + T E E+
Sbjct: 52 ----AEVTVAACDVADRDALAALLAALPAALGPLDGVVHNAGVLD-DGPLEELTPERFER 106
Query: 299 IVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQL 356
+++ + G+ + RD G + +G +P A Y + L L
Sbjct: 107 VLAPKVTGAWNLH----ELTRDLD-LGAFVLF-SSVAGVLGSPGQANYAAANAALDAL 158
|
This family contains a wide variety of dehydrogenases. Length = 167 |
| >gnl|CDD|187647 cd08943, R1PA_ADH_SDR_c, rhamnulose-1-phosphate aldolase/alcohol dehydrogenase, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 84.4 bits (209), Expect = 2e-18
Identities = 60/211 (28%), Positives = 90/211 (42%), Gaps = 25/211 (11%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
++TG G+G A+A+ G VVVA E V E +
Sbjct: 4 ALVTGGASGIGLAIAKRLAAEGAAVVVADIDPEIAE-KVAEAAQG--------------- 47
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQI 299
+ G+ CDV A VQ AV EFG +DI ++NAG P+ + + E+ +
Sbjct: 48 --GPRALGVQCDVTSEAQVQSAFEQAVLEFGGLDIVVSNAGIATS-SPIAETSLEDWNRS 104
Query: 300 VSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQAS 359
+ NL G L +REA R+M+ Q GG+I + + + + P A Y + K L
Sbjct: 105 MDINLTGHFLVSREAFRIMKSQGIGGNIV-FNASKNAVAPGPNAAAYSAAKAAEAHLARC 163
Query: 360 LFKESKRSKVGVHTASPGMVLTDLLLSGSTI 390
L E + V+T +P D + GS I
Sbjct: 164 LALEGGEDGIRVNTVNP-----DAVFRGSKI 189
|
This family has bifunctional proteins with an N-terminal aldolase and a C-terminal classical SDR domain. One member is identified as a rhamnulose-1-phosphate aldolase/alcohol dehydrogenase. The SDR domain has a canonical SDR glycine-rich NAD(P) binding motif and a match to the characteristic active site triad. However, it lacks an upstream active site Asn typical of SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 250 |
| >gnl|CDD|183489 PRK12384, PRK12384, sorbitol-6-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 83.9 bits (208), Expect = 3e-18
Identities = 41/146 (28%), Positives = 55/146 (37%), Gaps = 17/146 (11%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
V+ G + LG L G RV VA +SE E+ EG
Sbjct: 5 AVVIGGGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEG----------- 53
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQI 299
G D V LS FG +D+ + NAG K + F + ++
Sbjct: 54 ----MAYGFGADATSEQSVLALSRGVDEIFGRVDLLVYNAGIAKA-AFITDFQLGDFDRS 108
Query: 300 VSTNLVGSILCTREAMRVM-RDQPKG 324
+ NLVG LC RE R+M RD +G
Sbjct: 109 LQVNLVGYFLCAREFSRLMIRDGIQG 134
|
Length = 259 |
| >gnl|CDD|187642 cd08937, DHB_DH-like_SDR_c, 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase (DHB DH)-like, classical (c) SDR | Back alignment and domain information |
|---|
Score = 83.7 bits (207), Expect = 4e-18
Identities = 56/199 (28%), Positives = 87/199 (43%), Gaps = 24/199 (12%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
VV+TG+ +G+G+ +A G RV++ RS EL + ++AAG
Sbjct: 7 VVVTGAAQGIGRGVAERLAGEGARVLLVDRS---------ELVHEVLAEILAAGD----- 52
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQI 299
D+ A Q + AV FG +D+ INN G KP + E+IE
Sbjct: 53 ----AAHVHTADLETYAGAQGVVRAAVERFGRVDVLINNVGGTIWAKPYEHYEEEQIEAE 108
Query: 300 VSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG-AGSGGSSTPLTAVYGSTKCGLRQLQA 358
+ +L ++ C R + M ++ + G I N+ A G P Y + K G+ L A
Sbjct: 109 IRRSLFPTLWCCRAVLPHMLER-QQGVIVNVSSIATRGIYRIP----YSAAKGGVNALTA 163
Query: 359 SLFKESKRSKVGVHTASPG 377
SL E R + V+ +PG
Sbjct: 164 SLAFEHARDGIRVNAVAPG 182
|
DHB DH (aka 1,2-dihydroxycyclohexa-3,5-diene-1-carboxylate dehydrogenase) catalyzes the NAD-dependent conversion of 1,2-dihydroxycyclohexa-3,4-diene carboxylate to a catechol. This subgroup also contains Pseudomonas putida F1 CmtB, 2,3-dihydroxy-2,3-dihydro-p-cumate dehydrogenase, the second enzyme in the pathway for catabolism of p-cumate catabolism. This subgroup shares the glycine-rich NAD-binding motif of the classical SDRs and shares the same catalytic triad; however, the upstream Asn implicated in cofactor binding or catalysis in other SDRs is generally substituted by a Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 256 |
| >gnl|CDD|187640 cd08935, mannonate_red_SDR_c, putative D-mannonate oxidoreductase, classical (c) SDR | Back alignment and domain information |
|---|
Score = 84.0 bits (208), Expect = 4e-18
Identities = 59/221 (26%), Positives = 89/221 (40%), Gaps = 36/221 (16%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ VITG T LG A+AR +G +V R+ E E+ A GG +
Sbjct: 6 KVAVITGGTGVLGGAMARALAQAGAKVAALGRNQEKGDKVAKEIT--------ALGGRAI 57
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNK-------------G 284
+A DV + A +++ V +FG++DI IN AG N
Sbjct: 58 ---------ALAADVLDRASLERAREEIVAQFGTVDILINGAGGNHPDATTDPEHYEPET 108
Query: 285 FKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLT- 343
+ E E + NL GS L ++ + M +Q KGG I N+ S + +PLT
Sbjct: 109 EQNFFDLDEEGWEFVFDLNLNGSFLPSQVFGKDMLEQ-KGGSIINI---SSMNAFSPLTK 164
Query: 344 -AVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDL 383
Y + K + L E + V V+ +PG +T
Sbjct: 165 VPAYSAAKAAVSNFTQWLAVEFATTGVRVNAIAPGFFVTPQ 205
|
D-mannonate oxidoreductase catalyzes the NAD-dependent interconversion of D-mannonate and D-fructuronate. This subgroup includes Bacillus subtitils UxuB/YjmF, a putative D-mannonate oxidoreductase; the B. subtilis UxuB gene is part of a putative ten-gene operon (the Yjm operon) involved in hexuronate catabolism. Escherichia coli UxuB does not belong to this subgroup. This subgroup has a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 271 |
| >gnl|CDD|187601 cd05343, Mgc4172-like_SDR_c, human Mgc4172-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 83.3 bits (206), Expect = 6e-18
Identities = 50/211 (23%), Positives = 96/211 (45%), Gaps = 21/211 (9%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
R ++TG++ G+G A+AR + G +VV +R + + E + AG +
Sbjct: 7 RVALVTGASVGIGAAVARALVQHGMKVVGCARRVDKIEALAAECQS--------AGYPT- 57
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
+ CD+ + + + + +D+ INNAG + +PLL E +
Sbjct: 58 -------LFPYQCDLSNEEQILSMFSAIRTQHQGVDVCINNAGLARP-EPLLSGKTEGWK 109
Query: 298 QIVSTNLVGSILCTREAMRVMRDQ-PKGGHIFNMDG-AGSGGSSTPLTAVYGSTKCGLRQ 355
++ N++ +CTREA + M+++ GHI N++ +G + Y +TK +
Sbjct: 110 EMFDVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRVPPVSVFHFYAATKHAVTA 169
Query: 356 LQASLFKE--SKRSKVGVHTASPGMVLTDLL 384
L L +E ++ + + SPG+V T+
Sbjct: 170 LTEGLRQELREAKTHIRATSISPGLVETEFA 200
|
Human Mgc4172-like proteins, putative SDRs. These proteins are members of the SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 250 |
| >gnl|CDD|236372 PRK09072, PRK09072, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 83.1 bits (206), Expect = 7e-18
Identities = 63/243 (25%), Positives = 104/243 (42%), Gaps = 33/243 (13%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ V++TG++ G+G+ALA +G R+++ R++E + L +
Sbjct: 6 KRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARLP-----------YPGR 54
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
V A D+ A + + A E G I++ INNAG N F L E IE
Sbjct: 55 HRWVVA-------DLTSEAGREAVLARA-REMGGINVLINNAGVNH-FALLEDQDPEAIE 105
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKG-----GHIFNMDGAGSGGSSTPLTAVYGSTKCG 352
++++ NL + TR + ++R QP G F GS G P A Y ++K
Sbjct: 106 RLLALNLTAPMQLTRALLPLLRAQPSAMVVNVGSTF-----GSIG--YPGYASYCASKFA 158
Query: 353 LRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVP 412
LR +L +E + V V +P T + N+ + N + + PE VA ++
Sbjct: 159 LRGFSEALRRELADTGVRVLYLAPRATRTAMNSEAVQALNRALGNAMDD-PEDVAAAVLQ 217
Query: 413 RIR 415
I
Sbjct: 218 AIE 220
|
Length = 263 |
| >gnl|CDD|187600 cd05341, 3beta-17beta-HSD_like_SDR_c, 3beta17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 82.4 bits (204), Expect = 9e-18
Identities = 56/204 (27%), Positives = 83/204 (40%), Gaps = 25/204 (12%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
++TG RGLG A AR + G +VV++ E + EL +
Sbjct: 8 AIVTGGARGLGLAHARLLVAEGAKVVLSDILDEEGQAAAAELGD-------------AAR 54
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQI 299
H DV + + + A FG +D+ +NNAG G + T EE ++
Sbjct: 55 FFHL-------DVTDEDGWTAVVDTAREAFGRLDVLVNNAGILTG-GTVETTTLEEWRRL 106
Query: 300 VSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQAS 359
+ NL G L TR + M++ GG I NM G P A Y ++K +R L S
Sbjct: 107 LDINLTGVFLGTRAVIPPMKEA-GGGSIINMSSI-EGLVGDPALAAYNASKGAVRGLTKS 164
Query: 360 LFKESKRSKVG--VHTASPGMVLT 381
E G V++ PG + T
Sbjct: 165 AALECATQGYGIRVNSVHPGYIYT 188
|
This subgroup includes members identified as 3beta17beta hydroxysteroid dehydrogenase, 20beta hydroxysteroid dehydrogenase, and R-alcohol dehydrogenase. These proteins exhibit the canonical active site tetrad and glycine rich NAD(P)-binding motif of the classical SDRs. 17beta-dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens, and include members of the SDR family. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 247 |
| >gnl|CDD|181297 PRK08217, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 1e-17
Identities = 58/222 (26%), Positives = 93/222 (41%), Gaps = 47/222 (21%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
+VITG +GLG+A+A G ++ + + E + V E A G
Sbjct: 8 IVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECG--------ALGT----- 54
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAG---------------TNKG 284
+V G A +V + DV+ +FG ++ INNAG T+K
Sbjct: 55 ----EVRGYAANVTDEEDVEATFAQIAEDFGQLNGLINNAGILRDGLLVKAKDGKVTSK- 109
Query: 285 FKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG---AGSGGSSTP 341
L QF + ++ NL G LC REA M + G I N+ AG+ G +
Sbjct: 110 -MSLEQF-----QSVIDVNLTGVFLCGREAAAKMIESGSKGVIINISSIARAGNMGQTN- 162
Query: 342 LTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDL 383
Y ++K G+ + + KE R + V +PG++ T++
Sbjct: 163 ----YSASKAGVAAMTVTWAKELARYGIRVAAIAPGVIETEM 200
|
Length = 253 |
| >gnl|CDD|187631 cd05373, SDR_c10, classical (c) SDR, subgroup 10 | Back alignment and domain information |
|---|
Score = 81.7 bits (202), Expect = 1e-17
Identities = 55/195 (28%), Positives = 84/195 (43%), Gaps = 21/195 (10%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
+ G+ GLG A+AR F G V +A+R +LE L + + AGGS+K
Sbjct: 2 AAVVGAGDGLGAAIARRFAAEGFSVALAARREA-------KLEALLVDIIRDAGGSAK-- 52
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQI 299
+ D + +V L + E G +++ + NAG N F P+L+ T E++
Sbjct: 53 -------AVPTDARDEDEVIALFDLIEEEIGPLEVLVYNAGANVWF-PILETTPRVFEKV 104
Query: 300 VSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQAS 359
G L REA + M + +G IF GA + A + K LR L S
Sbjct: 105 WEMAAFGGFLAAREAAKRMLARGRGTIIFT--GATASLRGRAGFAAFAGAKFALRALAQS 162
Query: 360 LFKESKRSKVGVHTA 374
+ +E G+H A
Sbjct: 163 MARE--LGPKGIHVA 175
|
This subgroup resembles the classical SDRs, but has an incomplete match to the canonical glycine rich NAD-binding motif and lacks the typical active site tetrad (instead of the critical active site Tyr, it has Phe, but contains the nearby Lys). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 238 |
| >gnl|CDD|187638 cd08933, RDH_SDR_c, retinal dehydrogenase-like, classical (c) SDR | Back alignment and domain information |
|---|
Score = 82.2 bits (203), Expect = 1e-17
Identities = 59/213 (27%), Positives = 101/213 (47%), Gaps = 23/213 (10%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
V++TG +RG+G+ + R F+ +G +VV +R + + +EL A GS K
Sbjct: 12 VIVTGGSRGIGRGIVRAFVENGAKVVFCARGEAAGQALESELNR-------AGPGSCKF- 63
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQI 299
+ CDV + D++ L + V FG ID +NNAG + + + + +E +
Sbjct: 64 --------VPCDVTKEEDIKTLISVTVERFGRIDCLVNNAGWHPPHQTTDETSAQEFRDL 115
Query: 300 VSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG-AGSGGSSTPLTAVYGSTKCGLRQLQA 358
++ NL+ L ++ A+ +R G+I N+ GS G A Y +TK + +
Sbjct: 116 LNLNLISYFLASKYALPHLRKSQ--GNIINLSSLVGSIGQKQ--AAPYVATKGAITAMTK 171
Query: 359 SLFKESKRSKVGVHTASPGMVLTDLL--LSGST 389
+L + R V V+ SPG + T L L+ T
Sbjct: 172 ALAVDESRYGVRVNCISPGNIWTPLWEELAAQT 204
|
These classical SDRs includes members identified as retinol dehydrogenases, which convert retinol to retinal, a property that overlaps with 17betaHSD activity. 17beta-dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens, and include members of the short-chain dehydrogenases/reductase family. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 261 |
| >gnl|CDD|187598 cd05339, 17beta-HSDXI-like_SDR_c, human 17-beta-hydroxysteroid dehydrogenase XI-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 81.9 bits (203), Expect = 1e-17
Identities = 68/267 (25%), Positives = 104/267 (38%), Gaps = 35/267 (13%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
V+ITG G+G+ LA EF G +VV+ + + T + + +
Sbjct: 2 VLITGGGSGIGRLLALEFAKRGAKVVILDINEKGAEETANNVRKAGGK------------ 49
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQI 299
VH CDV + +V + + E G + I INNAG G K LL+ +EEIE+
Sbjct: 50 -VHYYK----CDVSKREEVYEAAKKIKKEVGDVTILINNAGVVSG-KKLLELPDEEIEKT 103
Query: 300 VSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGG-SSTPLTAVYGSTKCGLRQLQA 358
N + T+ + M ++ GHI + A G S A Y ++K
Sbjct: 104 FEVNTLAHFWTTKAFLPDMLERNH-GHIVTI--ASVAGLISPAGLADYCASKAAAVGFHE 160
Query: 359 SLFKESKRSKV-GVHTA--SPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPRIR 415
SL E K G+ T P + T + G + I+ PE VA +V I
Sbjct: 161 SLRLELKAYGKPGIKTTLVCPYFINTG-MFQGVKTPRPLLAPIL--EPEYVAEKIVRAIL 217
Query: 416 VVKGSGKAINYLTPPRILLALVTAWLR 442
+ + + YL P + R
Sbjct: 218 ----TNQQMLYL--PFY-AYFLPILKR 237
|
17-beta-hydroxysteroid dehydrogenases (17betaHSD) are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. 17betaHSD type XI, a classical SDR, preferentially converts 3alpha-adiol to androsterone but not numerous other tested steroids. This subgroup of classical SDRs also includes members identified as retinol dehydrogenases, which convert retinol to retinal, a property that overlaps with 17betaHSD activity. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 243 |
| >gnl|CDD|187596 cd05337, BKR_1_SDR_c, putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR), subgroup 1, classical (c) SDR | Back alignment and domain information |
|---|
Score = 81.7 bits (202), Expect = 2e-17
Identities = 52/210 (24%), Positives = 86/210 (40%), Gaps = 25/210 (11%)
Query: 181 VITGSTRGLGKALAREFLLSG-DRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
++TG++RG+G+A+A E G D + + V E+ AAG
Sbjct: 5 IVTGASRGIGRAIATELAARGFDIAINDLPDDDQATEVVAEVL--------AAGR----- 51
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAG-TNKGFKPLLQFTNEEIEQ 298
+ D+ E +D + L + A +FG +D +NNAG + LL T + ++
Sbjct: 52 ----RAIYFQADIGELSDHEALLDQAWEDFGRLDCLVNNAGIAVRPRGDLLDLTEDSFDR 107
Query: 299 IVSTNLVGSILCTREAMRVMRDQPKG-----GHIFNMDGAGSGGSSTPLTAVYGSTKCGL 353
+++ NL G T+ R M +QP I + + S P Y +K GL
Sbjct: 108 LIAINLRGPFFLTQAVARRMVEQPDRFDGPHRSIIFVTSINAYLVS-PNRGEYCISKAGL 166
Query: 354 RQLQASLFKESKRSKVGVHTASPGMVLTDL 383
L + VH PG++ TD+
Sbjct: 167 SMATRLLAYRLADEGIAVHEIRPGLIHTDM 196
|
This subgroup includes Escherichia coli CFT073 FabG. The Escherichai coli K12 BKR, FabG, belongs to a different subgroup. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet) NAD(P)(H) binding region and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H) binding pattern: TGxxxGxG in classical SDRs. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P) binding motif and an altered active site motif (YXXXN). Fungal type type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P) binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr-151 and Lys-155, and well as Asn-111 (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 255 |
| >gnl|CDD|187635 cd08930, SDR_c8, classical (c) SDR, subgroup 8 | Back alignment and domain information |
|---|
Score = 81.6 bits (202), Expect = 2e-17
Identities = 50/217 (23%), Positives = 93/217 (42%), Gaps = 34/217 (15%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ ++ITG+ +GKA + L +G R+++A ++ ++ EL
Sbjct: 3 KIILITGAAGLIGKAFCKALLSAGARLILADINAPALEQLKEELT--------------- 47
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAG-TNKG-FKPLLQFTNEE 295
NL +V + D+ +++L + +FG IDI INNA + K +F E+
Sbjct: 48 -NLYKNRVIALELDITSKESIKELIESYLEKFGRIDILINNAYPSPKVWGSRFEEFPYEQ 106
Query: 296 IEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGS------------GGSSTPLT 343
++++ NL G+ LC++ +++ + Q G I N+ S +
Sbjct: 107 WNEVLNVNLGGAFLCSQAFIKLFKKQ-GKGSIINI---ASIYGVIAPDFRIYENTQMYSP 162
Query: 344 AVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVL 380
Y K G+ L L K + + V+ SPG +L
Sbjct: 163 VEYSVIKAGIIHLTKYLAKYYADTGIRVNAISPGGIL 199
|
This subgroup has a fairly well conserved active site tetrad and domain size of the classical SDRs, but has an atypical NAD-binding motif ([ST]G[GA]XGXXG). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 250 |
| >gnl|CDD|235813 PRK06482, PRK06482, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 82.1 bits (203), Expect = 2e-17
Identities = 49/206 (23%), Positives = 85/206 (41%), Gaps = 23/206 (11%)
Query: 177 PRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSS 236
+ ITG++ G G+ + L GDRV R +++ + L
Sbjct: 2 SKTWFITGASSGFGRGMTERLLARGDRVAATVRRPDALDDLKARYGDRLWVL-------- 53
Query: 237 KKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEI 296
DV + A V+ + + A G ID+ ++NAG F + ++ +I
Sbjct: 54 ------------QLDVTDSAAVRAVVDRAFAALGRIDVVVSNAGYGL-FGAAEELSDAQI 100
Query: 297 EQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQL 356
+ + TNL+GSI R A+ +R Q GG I + G G + P ++Y +TK G+
Sbjct: 101 RRQIDTNLIGSIQVIRAALPHLRRQ-GGGRIVQVSSEG-GQIAYPGFSLYHATKWGIEGF 158
Query: 357 QASLFKESKRSKVGVHTASPGMVLTD 382
++ +E + PG T+
Sbjct: 159 VEAVAQEVAPFGIEFTIVEPGPARTN 184
|
Length = 276 |
| >gnl|CDD|187593 cd05332, 11beta-HSD1_like_SDR_c, 11beta-hydroxysteroid dehydrogenase type 1 (11beta-HSD1)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 81.5 bits (202), Expect = 2e-17
Identities = 52/205 (25%), Positives = 92/205 (44%), Gaps = 21/205 (10%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
V+ITG++ G+G+ LA G R+V+++R E LEE +K S
Sbjct: 6 VIITGASSGIGEELAYHLARLGARLVLSARREE-------RLEE-VK--------SECLE 49
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEI-EQ 298
L + D+ + D +++ A+ FG +DI INNAG + L T+ ++ +
Sbjct: 50 LGAPSPHVVPLDMSDLEDAEQVVEEALKLFGGLDILINNAGI--SMRSLFHDTSIDVDRK 107
Query: 299 IVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQA 358
I+ N G + T+ A+ + ++ G I + +G P Y ++K L+
Sbjct: 108 IMEVNYFGPVALTKAALPHLIER-SQGSIVVVSSI-AGKIGVPFRTAYAASKHALQGFFD 165
Query: 359 SLFKESKRSKVGVHTASPGMVLTDL 383
SL E + V PG++ T++
Sbjct: 166 SLRAELSEPNISVTVVCPGLIDTNI 190
|
Human 11beta_HSD1 catalyzes the NADP(H)-dependent interconversion of cortisone and cortisol. This subgroup also includes human dehydrogenase/reductase SDR family member 7C (DHRS7C) and DHRS7B. These proteins have the GxxxGxG nucleotide binding motif and S-Y-K catalytic triad characteristic of the SDRs, but have an atypical C-terminal domain that contributes to homodimerization contacts. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 257 |
| >gnl|CDD|180723 PRK06841, PRK06841, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 80.9 bits (200), Expect = 4e-17
Identities = 56/208 (26%), Positives = 85/208 (40%), Gaps = 27/208 (12%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ V+TG G+G A+A F G RV + RS + + L N K
Sbjct: 16 KVAVVTGGASGIGHAIAELFAAKGARVALLDRSEDVAEVAAQLLGGNAK----------- 64
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
G+ CDV + V+ ++ FG IDI +N+AG P + E+ +
Sbjct: 65 ---------GLVCDVSDSQSVEAAVAAVISAFGRIDILVNSAGVAL-LAPAEDVSEEDWD 114
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLT--AVYGSTKCGLRQ 355
+ + NL GS L + R M GG I N+ S L Y ++K G+
Sbjct: 115 KTIDINLKGSFLMAQAVGRHMIAA-GGGKIVNL---ASQAGVVALERHVAYCASKAGVVG 170
Query: 356 LQASLFKESKRSKVGVHTASPGMVLTDL 383
+ L E + V+ SP +VLT+L
Sbjct: 171 MTKVLALEWGPYGITVNAISPTVVLTEL 198
|
Length = 255 |
| >gnl|CDD|187623 cd05365, 7_alpha_HSDH_SDR_c, 7 alpha-hydroxysteroid dehydrogenase (7 alpha-HSDH), classical (c) SDRs | Back alignment and domain information |
|---|
Score = 80.3 bits (198), Expect = 4e-17
Identities = 59/216 (27%), Positives = 91/216 (42%), Gaps = 29/216 (13%)
Query: 179 NVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKK 238
++TG G+GKA+A +G VV+A SE +++ GG
Sbjct: 1 VAIVTGGAAGIGKAIAGTLAKAGASVVIADLKSEGAEAVAAAIQQA--------GG---- 48
Query: 239 NLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPL-LQFTNEEIE 297
+ G+ C+V D++ + V++FG I I +NNAG G KP + T E+ E
Sbjct: 49 -----QAIGLECNVTSEQDLEAVVKATVSQFGGITILVNNAGGG-GPKPFDMPMTEEDFE 102
Query: 298 QIVSTNLVG----SILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGL 353
NL S LC + GG I N+ + S + A YGS+K +
Sbjct: 103 WAFKLNLFSAFRLSQLCAPHMQ-----KAGGGAILNI-SSMSSENKNVRIAAYGSSKAAV 156
Query: 354 RQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGST 389
+ +L + + V+ +PG V TD L S T
Sbjct: 157 NHMTRNLAFDLGPKGIRVNAVAPGAVKTDALASVLT 192
|
This bacterial subgroup contains 7 alpha-HSDHs, including Escherichia coli 7 alpha-HSDH. 7 alpha-HSDH, a member of the SDR family, catalyzes the NAD+ -dependent dehydrogenation of a hydroxyl group at position 7 of the steroid skeleton of bile acids. In humans the two primary bile acids are cholic and chenodeoxycholic acids, these are formed from cholesterol in the liver. Escherichia coli 7 alpha-HSDH dehydroxylates these bile acids in the human intestine. Mammalian 7 alpha-HSDH activity has been found in livers. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 242 |
| >gnl|CDD|187639 cd08934, CAD_SDR_c, clavulanic acid dehydrogenase (CAD), classical (c) SDR | Back alignment and domain information |
|---|
Score = 79.9 bits (197), Expect = 6e-17
Identities = 56/203 (27%), Positives = 87/203 (42%), Gaps = 20/203 (9%)
Query: 181 VITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNL 240
++TG++ G+G+A AR G V +A+R + + ELE A GG
Sbjct: 7 LVTGASSGIGEATARALAAEGAAVAIAARRVDRLEALADELE--------AEGG------ 52
Query: 241 VHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIV 300
A V + DV + V V G +DI +NNAG P+ + +++
Sbjct: 53 -KALV--LELDVTDEQQVDAAVERTVEALGRLDILVNNAGIML-LGPVEDADTTDWTRMI 108
Query: 301 STNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASL 360
TNL+G + T A+ + G I N+ +G + +AVY +TK G+ L
Sbjct: 109 DTNLLGLMYTTHAALPHHLLR-NKGTIVNISSV-AGRVAVRNSAVYNATKFGVNAFSEGL 166
Query: 361 FKESKRSKVGVHTASPGMVLTDL 383
+E V V PG V T+L
Sbjct: 167 RQEVTERGVRVVVIEPGTVDTEL 189
|
CAD catalyzes the NADP-dependent reduction of clavulanate-9-aldehyde to clavulanic acid, a beta-lactamase inhibitor. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 243 |
| >gnl|CDD|187628 cd05370, SDR_c2, classical (c) SDR, subgroup 2 | Back alignment and domain information |
|---|
Score = 79.7 bits (197), Expect = 7e-17
Identities = 60/209 (28%), Positives = 96/209 (45%), Gaps = 28/209 (13%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
V+ITG T G+G ALAR+FL +G+ V++ R EE L E +
Sbjct: 6 NTVLITGGTSGIGLALARKFLEAGNTVIITGRR-----------EERLAE-AKKELPN-- 51
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPL-LQFTNEEI 296
+H V DV + V+ L+ ++E+ ++DI INNAG + ++
Sbjct: 52 ---IHTIV----LDVGDAESVEALAEALLSEYPNLDILINNAGIQRPIDLRDPASDLDKA 104
Query: 297 EQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTA--VYGSTKCGLR 354
+ + TNL+G I + + ++ QP+ I N+ SG + P+ A VY +TK L
Sbjct: 105 DTEIDTNLIGPIRLIKAFLPHLKKQPEAT-IVNV---SSGLAFVPMAANPVYCATKAALH 160
Query: 355 QLQASLFKESKRSKVGVHTASPGMVLTDL 383
+L + K + V V P V T+L
Sbjct: 161 SYTLALRHQLKDTGVEVVEIVPPAVDTEL 189
|
Short-chain dehydrogenases/reductases (SDRs, aka Tyrosine-dependent oxidoreductases) are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 228 |
| >gnl|CDD|131468 TIGR02415, 23BDH, acetoin reductases | Back alignment and domain information |
|---|
Score = 79.8 bits (197), Expect = 8e-17
Identities = 56/203 (27%), Positives = 94/203 (46%), Gaps = 19/203 (9%)
Query: 181 VITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNL 240
++TG +G+GK +A G V VA + E+ + T E+ + AGG
Sbjct: 4 LVTGGAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQ--------AGG------ 49
Query: 241 VHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIV 300
A + DV + V + A +FG D+ +NNAG P+L+ T EE++++
Sbjct: 50 -KAVAYKL--DVSDKDQVFSAIDQAAEKFGGFDVMVNNAGVAP-ITPILEITEEELKKVY 105
Query: 301 STNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASL 360
+ N+ G + + A R + Q GG I N + +G P+ + Y STK +R L +
Sbjct: 106 NVNVKGVLFGIQAAARQFKKQGHGGKIINA-ASIAGHEGNPILSAYSSTKFAVRGLTQTA 164
Query: 361 FKESKRSKVGVHTASPGMVLTDL 383
+E + V+ PG+V T +
Sbjct: 165 AQELAPKGITVNAYCPGIVKTPM 187
|
One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PMID:11577733) [Energy metabolism, Fermentation]. Length = 254 |
| >gnl|CDD|181136 PRK07825, PRK07825, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 80.0 bits (198), Expect = 1e-16
Identities = 80/299 (26%), Positives = 111/299 (37%), Gaps = 48/299 (16%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ V ITG RG+G A AR G RV + + T EL
Sbjct: 6 KVVAITGGARGIGLATARALAALGARVAIGDLDEALAKETAAEL---------------- 49
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEE-- 295
V G DV +PA + + G ID+ +NNAG P+ F +E
Sbjct: 50 -----GLVVGGPLDVTDPASFAAFLDAVEADLGPIDVLVNNAGV----MPVGPFLDEPDA 100
Query: 296 -IEQIVSTNLVGSILCTREAMRVMRDQPKG-GHIFNMDGAGSGGSSTPLTAVYGSTKCGL 353
+I+ N+ G IL ++ A M P+G GH+ N+ +G P A Y ++K +
Sbjct: 101 VTRRILDVNVYGVILGSKLAAPRMV--PRGRGHVVNVASL-AGKIPVPGMATYCASKHAV 157
Query: 354 RQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLV-- 411
+ E + + V V P V T+ L T K N E PE VA +V
Sbjct: 158 VGFTDAARLELRGTGVHVSVVLPSFVNTE--LIAGTGGAKGFKN--VE-PEDVAAAIVGT 212
Query: 412 -----PRIRVVK--GSGKAINYLTPPRILLALVTAWL--RRGRWFDDQGRALYAAEADR 461
P +RV + G L P R+ AL R D RA Y A
Sbjct: 213 VAKPRPEVRVPRALGPLAQAQRLLPRRVREALNRLLGGDRVFLDVDTAARAAYERRARG 271
|
Length = 273 |
| >gnl|CDD|235726 PRK06181, PRK06181, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 79.3 bits (196), Expect = 1e-16
Identities = 58/212 (27%), Positives = 88/212 (41%), Gaps = 36/212 (16%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
V+ITG++ G+G+ALA +G ++V+A+R+ + EL +
Sbjct: 4 VIITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELAD---------------- 47
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTN--KGFKPLLQFTNEEIE 297
+ + DV + ++L AV FG IDI +NNAG F L E
Sbjct: 48 -HGGEALVVPTDVSDAEACERLIEAAVARFGGIDILVNNAGITMWSRFDELTDL--SVFE 104
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTP-LTAV-----YGSTKC 351
+++ N +G++ CT A+ P H+ G SS LT V Y ++K
Sbjct: 105 RVMRVNYLGAVYCTHAAL------P---HLKASRGQIVVVSSLAGLTGVPTRSGYAASKH 155
Query: 352 GLRQLQASLFKESKRSKVGVHTASPGMVLTDL 383
L SL E V V PG V TD+
Sbjct: 156 ALHGFFDSLRIELADDGVAVTVVCPGFVATDI 187
|
Length = 263 |
| >gnl|CDD|187597 cd05338, DHRS1_HSDL2-like_SDR_c, human dehydrogenase/reductase (SDR family) member 1 (DHRS1) and human hydroxysteroid dehydrogenase-like protein 2 (HSDL2), classical (c) SDRs | Back alignment and domain information |
|---|
Score = 78.6 bits (194), Expect = 2e-16
Identities = 56/212 (26%), Positives = 94/212 (44%), Gaps = 28/212 (13%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTE-LE---ENLKEGMMAAGGS 235
+TG++RG+G+A+A +G VVVA++++ + L E E + AAGG
Sbjct: 6 AFVTGASRGIGRAIALRLAKAGATVVVAAKTASEGDNGSAKSLPGTIEETAEEIEAAGG- 64
Query: 236 SKKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAG----TNKGFKPLLQF 291
+ I DV + V+ L V++FG +DI +NNAG + P +F
Sbjct: 65 --------QALPIVVDVRDEDQVRALVEATVDQFGRLDILVNNAGAIWLSLVEDTPAKRF 116
Query: 292 TNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPL--TAVYGST 349
+ + NL G+ L ++ A+ M + GHI N+ S P Y +
Sbjct: 117 -----DLMQRVNLRGTYLLSQAALPHMVKAGQ-GHILNI---SPPLSLRPARGDVAYAAG 167
Query: 350 KCGLRQLQASLFKESKRSKVGVHTASPGMVLT 381
K G+ +L L E +R + V++ P +
Sbjct: 168 KAGMSRLTLGLAAELRRHGIAVNSLWPSTAIE 199
|
This subgroup includes human DHRS1 and human HSDL2 and related proteins. These are members of the classical SDR family, with a canonical Gly-rich NAD-binding motif and the typical YXXXK active site motif. However, the rest of the catalytic tetrad is not strongly conserved. DHRS1 mRNA has been detected in many tissues, liver, heart, skeletal muscle, kidney and pancreas; a longer transcript is predominantly expressed in the liver , a shorter one in the heart. HSDL2 may play a part in fatty acid metabolism, as it is found in peroxisomes. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 246 |
| >gnl|CDD|236241 PRK08324, PRK08324, short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 81.8 bits (203), Expect = 2e-16
Identities = 59/223 (26%), Positives = 87/223 (39%), Gaps = 39/223 (17%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
++TG+ G+GKA A+ G VV+A E+ EL
Sbjct: 425 ALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGG---------------- 468
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQI 299
+ G+ACDV + A VQ A FG +DI ++NAG P+ + ++E+ +
Sbjct: 469 --PDRALGVACDVTDEAAVQAAFEEAALAFGGVDIVVSNAG-IAISGPIEETSDEDWRRS 525
Query: 300 VSTNLVGSILCTREAMRVMRDQPKGGHI-FNMD------GAGSGGSSTPLTAVYGSTKCG 352
N G L REA+R+M+ Q GG I F G G YG+ K
Sbjct: 526 FDVNATGHFLVAREAVRIMKAQGLGGSIVFIASKNAVNPGPNFGA--------YGAAKAA 577
Query: 353 LRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQM 395
L L E + V+ V D ++ GS I +
Sbjct: 578 ELHLVRQLALELGPDGIRVN-----GVNPDAVVRGSGIWTGEW 615
|
Length = 681 |
| >gnl|CDD|180411 PRK06123, PRK06123, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 78.3 bits (193), Expect = 2e-16
Identities = 60/214 (28%), Positives = 96/214 (44%), Gaps = 19/214 (8%)
Query: 177 PRNV-VITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGS 235
R V +ITG++RG+G A A G V + + + E + + + GG
Sbjct: 1 MRKVMIITGASRGIGAATALLAAERGYAVCLNYLRNR-------DAAEAVVQAIRRQGGE 53
Query: 236 SKKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEE 295
+ +A DV + ADV +L E G +D +NNAG + L Q
Sbjct: 54 A---------LAVAADVADEADVLRLFEAVDRELGRLDALVNNAGILEAQMRLEQMDAAR 104
Query: 296 IEQIVSTNLVGSILCTREAMRVM--RDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGL 353
+ +I +TN+VGS LC REA++ M R +GG I N+ + S Y ++K +
Sbjct: 105 LTRIFATNVVGSFLCAREAVKRMSTRHGGRGGAIVNVSSMAARLGSPGEYIDYAASKGAI 164
Query: 354 RQLQASLFKESKRSKVGVHTASPGMVLTDLLLSG 387
+ L KE + V+ PG++ T++ SG
Sbjct: 165 DTMTIGLAKEVAAEGIRVNAVRPGVIYTEIHASG 198
|
Length = 248 |
| >gnl|CDD|235924 PRK07063, PRK07063, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 3e-16
Identities = 54/207 (26%), Positives = 86/207 (41%), Gaps = 20/207 (9%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ ++TG+ +G+G A+AR F G V +A + + + AG
Sbjct: 8 KVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARD------VAG---- 57
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
A+V + DV + A V A FG +D+ +NNAG N F L T+E+
Sbjct: 58 -----ARVLAVPADVTDAASVAAAVAAAEEAFGPLDVLVNNAGINV-FADPLAMTDEDWR 111
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSST-PLTAVYGSTKCGLRQL 356
+ + +L G+ R + M ++ G I N+ A + P Y K GL L
Sbjct: 112 RCFAVDLDGAWNGCRAVLPGMVER-GRGSIVNI--ASTHAFKIIPGCFPYPVAKHGLLGL 168
Query: 357 QASLFKESKRSKVGVHTASPGMVLTDL 383
+L E V V+ +PG + T L
Sbjct: 169 TRALGIEYAARNVRVNAIAPGYIETQL 195
|
Length = 260 |
| >gnl|CDD|235713 PRK06139, PRK06139, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 79.0 bits (195), Expect = 5e-16
Identities = 79/312 (25%), Positives = 131/312 (41%), Gaps = 60/312 (19%)
Query: 177 PRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSS 236
VVITG++ G+G+A A F G R+V+A+R E+++ E
Sbjct: 7 GAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRA------------- 53
Query: 237 KKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFK----PLLQFT 292
+ A+V + DV + V+ L+ A + G ID+W+NN G + P+
Sbjct: 54 ----LGAEVLVVPTDVTDADQVKALATQAASFGGRIDVWVNNVGVGAVGRFEETPI---- 105
Query: 293 NEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIF-NMDGAGSGGSSTPLTAVYGSTKC 351
E EQ++ TNL+G + A+ + + Q G IF NM G G ++ P A Y ++K
Sbjct: 106 -EAHEQVIQTNLIGYMRDAHAALPIFKKQGHG--IFINMISLG-GFAAQPYAAAYSASKF 161
Query: 352 GLRQLQASLFKE-SKRSKVGVHTASPGMVLTDLLLSGSTIQNKQ------MFNIICELPE 404
GLR +L E + + V P + T G+ ++ +++ P
Sbjct: 162 GLRGFSEALRGELADHPDIHVCDVYPAFMDTPGFRHGANYTGRRLTPPPPVYD-----PR 216
Query: 405 TVARTLV-----PRIRVVKGSGKAI----NYLTPPRILLALVTAWLRRGRWFDDQGRA-- 453
VA+ +V PR G+ + ++L P L A + L R R+ RA
Sbjct: 217 RVAKAVVRLADRPRATTTVGAAARLARLAHFLAPG--LTARLMGRLTR-RYLARAPRAAR 273
Query: 454 ----LYAAEADR 461
L+A +
Sbjct: 274 SSGNLFAPPSGA 285
|
Length = 330 |
| >gnl|CDD|187586 cd05325, carb_red_sniffer_like_SDR_c, carbonyl reductase sniffer-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 6e-16
Identities = 68/258 (26%), Positives = 108/258 (41%), Gaps = 43/258 (16%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVAS-RSSESVRMTVTELEENLKEGMMAAGGSSKK 238
V+ITG++RG+G L R+ L G+ V+A+ R + TEL AA G+S
Sbjct: 1 VLITGASRGIGLELVRQLLARGNNTVIATCRDPSA----ATEL---------AALGASHS 47
Query: 239 NLVHAKVAGIACDVCEPADVQKLSNFAVNEFGS------IDIWINNAGTNKGFKPLLQFT 292
L DV + +D+ INNAG + P +
Sbjct: 48 RL-----------HILELDVTDEIAESAEAVAERLGDAGLDVLINNAGILHSYGPASEVD 96
Query: 293 NEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD-GAGSGGSSTPLTAV-YGSTK 350
+E++ ++ N++G +L T+ + ++ + I N+ GS G +T Y ++K
Sbjct: 97 SEDLLEVFQVNVLGPLLLTQAFLPLLL-KGARAKIINISSRVGSIGDNTSGGWYSYRASK 155
Query: 351 CGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTL 410
L L SL E KR + V + PG V TD + G +NK PE L
Sbjct: 156 AALNMLTKSLAVELKRDGITVVSLHPGWVRTD--MGGPFAKNKGPIT-----PEESVAGL 208
Query: 411 VPRIRVVK--GSGKAINY 426
+ I + SGK ++Y
Sbjct: 209 LKVIDNLNEEDSGKFLDY 226
|
Sniffer is an NADPH-dependent carbonyl reductase of the classical SDR family. Studies in Drosophila melanogaster implicate Sniffer in the prevention of neurodegeneration due to aging and oxidative-stress. This subgroup also includes Rhodococcus sp. AD45 IsoH, which is an NAD-dependent 1-hydroxy-2-glutathionyl-2-methyl-3-butene dehydrogenase involved in isoprene metabolism, Aspergillus nidulans StcE encoded by a gene which is part of a proposed sterigmatocystin biosynthesis gene cluster, Bacillus circulans SANK 72073 BtrF encoded by a gene found in the butirosin biosynthesis gene cluster, and Aspergillus parasiticus nor-1 involved in the biosynthesis of aflatoxins. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 233 |
| >gnl|CDD|180771 PRK06947, PRK06947, glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 76.8 bits (189), Expect = 8e-16
Identities = 62/211 (29%), Positives = 94/211 (44%), Gaps = 20/211 (9%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVA-SRSSESVRMTVTELEENLKEGMMAAGGSSKK 238
V+ITG++RG+G+A A G V + +R + + T + AAGG
Sbjct: 5 VLITGASRGIGRATAVLAAARGWSVGINYARDAAAAEETADAVR--------AAGG---- 52
Query: 239 NLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQ 298
A V +A DV ADV + + + FG +D +NNAG PL + +
Sbjct: 53 ---RACV--VAGDVANEADVIAMFDAVQSAFGRLDALVNNAGIVAPSMPLADMDAARLRR 107
Query: 299 IVSTNLVGSILCTREAMRVMRDQP--KGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQL 356
+ TN++G+ LC REA R + +GG I N+ S S Y +K + L
Sbjct: 108 MFDTNVLGAYLCAREAARRLSTDRGGRGGAIVNVSSIASRLGSPNEYVDYAGSKGAVDTL 167
Query: 357 QASLFKESKRSKVGVHTASPGMVLTDLLLSG 387
L KE V V+ PG++ T++ SG
Sbjct: 168 TLGLAKELGPHGVRVNAVRPGLIETEIHASG 198
|
Length = 248 |
| >gnl|CDD|212492 cd05327, retinol-DH_like_SDR_c_like, retinol dehydrogenase (retinol-DH), Light dependent Protochlorophyllide (Pchlide) OxidoReductase (LPOR) and related proteins, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 77.3 bits (191), Expect = 8e-16
Identities = 60/224 (26%), Positives = 90/224 (40%), Gaps = 44/224 (19%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
VVITG+ G+GK ARE G V++A R+ E E+++
Sbjct: 4 VVITGANSGIGKETARELAKRGAHVIIACRNEEKGEEAAAEIKKETG------------- 50
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQI 299
+AKV I D+ A V++ + + F +DI INNAG P + T + E
Sbjct: 51 --NAKVEVIQLDLSSLASVRQFAEEFLARFPRLDILINNAGI---MAPPRRLTKDGFELQ 105
Query: 300 VSTNLVGSILCTREAMRVMRDQP------------KGGHI-FNMDGAGSGGSSTPLTAVY 346
+ N +G L T + V++ + G I FN + +P Y
Sbjct: 106 FAVNYLGHFLLTNLLLPVLKASAPSRIVNVSSIAHRAGPIDFNDLDLENNKEYSP-YKAY 164
Query: 347 GSTK--CGL--RQLQASLFKESKRSKVGVHTAS--PGMVLTDLL 384
G +K L R+L L GV + PG+V T+LL
Sbjct: 165 GQSKLANILFTRELARRL------EGTGVTVNALHPGVVRTELL 202
|
Classical SDR subgroup containing retinol-DHs, LPORs, and related proteins. Retinol is processed by a medium chain alcohol dehydrogenase followed by retinol-DHs. Pchlide reductases act in chlorophyll biosynthesis. There are distinct enzymes that catalyze Pchlide reduction in light or dark conditions. Light-dependent reduction is via an NADP-dependent SDR, LPOR. Proteins in this subfamily share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. This subgroup includes the human proteins: retinol dehydrogenase -12, -13 ,and -14, dehydrogenase/reductase SDR family member (DHRS)-12 , -13 and -X (a DHRS on chromosome X), and WWOX (WW domain-containing oxidoreductase), as well as a Neurospora crassa SDR encoded by the blue light inducible bli-4 gene. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 269 |
| >gnl|CDD|180439 PRK06171, PRK06171, sorbitol-6-phosphate 2-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 9e-16
Identities = 50/207 (24%), Positives = 76/207 (36%), Gaps = 38/207 (18%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
+++TG + G+G A+ +E L +G VV A + G +N
Sbjct: 12 IIVTGGSSGIGLAIVKELLANGANVVNAD---------------------IHGGDGQHEN 50
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTN--------KGFKPLLQF 291
DV +V + +FG ID +NNAG N K +
Sbjct: 51 YQFVP-----TDVSSAEEVNHTVAEIIEKFGRIDGLVNNAGINIPRLLVDEKDPAGKYEL 105
Query: 292 TNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG-AGSGGSSTPLTAVYGSTK 350
+++ + N G L ++ R M Q G I NM AG GS + Y +TK
Sbjct: 106 NEAAFDKMFNINQKGVFLMSQAVARQMVKQ-HDGVIVNMSSEAGLEGSEG--QSCYAATK 162
Query: 351 CGLRQLQASLFKESKRSKVGVHTASPG 377
L S KE + + V +PG
Sbjct: 163 AALNSFTRSWAKELGKHNIRVVGVAPG 189
|
Length = 266 |
| >gnl|CDD|187636 cd08931, SDR_c9, classical (c) SDR, subgroup 9 | Back alignment and domain information |
|---|
Score = 75.6 bits (186), Expect = 2e-15
Identities = 56/234 (23%), Positives = 90/234 (38%), Gaps = 23/234 (9%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ + ITG+ G+G+ A F +G V + E+ L G
Sbjct: 1 KAIFITGAASGIGRETALLFARNGWFVGLYDID-----------EDGLAALAAELGA--- 46
Query: 238 KNLVHAKVAGIACDVCEPAD-VQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEI 296
+N+V + DV + A L++FA G +D NNAG +G P
Sbjct: 47 ENVVAGAL-----DVTDRAAWAAALADFAAATGGRLDALFNNAGVGRG-GPFEDVPLAAH 100
Query: 297 EQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQL 356
+++V N+ G + A+ ++ P G + N + S P AVY +TK +R L
Sbjct: 101 DRMVDINVKGVLNGAYAALPYLKATP-GARVINTASS-SAIYGQPDLAVYSATKFAVRGL 158
Query: 357 QASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTL 410
+L E R + V P V T +L G T + VA+ +
Sbjct: 159 TEALDVEWARHGIRVADVWPWFVDTPILTKGETGAAPKKGLGRVLPVSDVAKVV 212
|
This subgroup has the canonical active site tetrad and NAD-binding motif of the classical SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 227 |
| >gnl|CDD|180993 PRK07478, PRK07478, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 75.7 bits (187), Expect = 2e-15
Identities = 60/211 (28%), Positives = 92/211 (43%), Gaps = 34/211 (16%)
Query: 181 VITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNL 240
+ITG++ G+G+A A+ F G +VVV +R EL++ L + A GG
Sbjct: 10 IITGASSGIGRAAAKLFAREGAKVVVGARRQA-------ELDQ-LVAEIRAEGG------ 55
Query: 241 VHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIV 300
+ +A DV + A + L AV FG +DI NNAGT P+ + + E + +
Sbjct: 56 ---EAVALAGDVRDEAYAKALVALAVERFGGLDIAFNNAGTLGEMGPVAEMSLEGWRETL 112
Query: 301 STNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSST--------PLTAVYGSTKCG 352
+TNL + L + + M + G IF +ST P A Y ++K G
Sbjct: 113 ATNLTSAFLGAKHQIPAMLARGGGSLIF---------TSTFVGHTAGFPGMAAYAASKAG 163
Query: 353 LRQLQASLFKESKRSKVGVHTASPGMVLTDL 383
L L L E + V+ PG T +
Sbjct: 164 LIGLTQVLAAEYGAQGIRVNALLPGGTDTPM 194
|
Length = 254 |
| >gnl|CDD|180802 PRK07035, PRK07035, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 75.8 bits (187), Expect = 2e-15
Identities = 54/217 (24%), Positives = 97/217 (44%), Gaps = 21/217 (9%)
Query: 181 VITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNL 240
++TG++RG+G+A+A+ G V+V+SR + + ++AAGG ++
Sbjct: 12 LVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADA--------IVAAGGKAE--- 60
Query: 241 VHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIV 300
+AC + E + L G +DI +NNA N F +L ++ V
Sbjct: 61 ------ALACHIGEMEQIDALFAHIRERHGRLDILVNNAAANPYFGHILDTDLGAFQKTV 114
Query: 301 STNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASL 360
N+ G + EA ++M++Q GG I N+ + +G S +Y TK + + +
Sbjct: 115 DVNIRGYFFMSVEAGKLMKEQ-GGGSIVNV-ASVNGVSPGDFQGIYSITKAAVISMTKAF 172
Query: 361 FKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFN 397
KE + V+ PG LTD + + +N +
Sbjct: 173 AKECAPFGIRVNALLPG--LTDTKFASALFKNDAILK 207
|
Length = 252 |
| >gnl|CDD|187603 cd05345, BKR_3_SDR_c, putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR), subgroup 3, classical (c) SDR | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 2e-15
Identities = 55/222 (24%), Positives = 95/222 (42%), Gaps = 29/222 (13%)
Query: 181 VITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNL 240
++TG+ G G+ +AR F G RVV+A +++ ++ E
Sbjct: 9 IVTGAGSGFGEGIARRFAQEGARVVIADINADGAERVAADIGEA---------------- 52
Query: 241 VHAKVAGIAC--DVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQ 298
IA DV + ADV+ + A+++FG +DI +NNAG KP+L+ EE ++
Sbjct: 53 ------AIAIQADVTKRADVEAMVEAALSKFGRLDILVNNAGITHRNKPMLEVDEEEFDR 106
Query: 299 IVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQA 358
+ + N+ L + + M +Q GG I N+ G P Y ++K +
Sbjct: 107 VFAVNVKSIYLSAQALVPHMEEQ-GGGVIINIASTA-GLRPRPGLTWYNASKGWVVTATK 164
Query: 359 SLFKESKRSKVGVHTASPGMVLTDLL---LSGSTIQNKQMFN 397
++ E + V+ P T LL + T +N+ F
Sbjct: 165 AMAVELAPRNIRVNCLCPVAGETPLLSMFMGEDTPENRAKFR 206
|
This subgroup includes the putative Brucella melitensis biovar Abortus 2308 BKR, FabG, Mesorhizobium loti MAFF303099 FabG, and other classical SDRs. BKR, a member of the SDR family, catalyzes the NADPH-dependent reduction of acyl carrier protein in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of 4 elongation steps, which are repeated to extend the fatty acid chain thru the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I Fas utilizes one or 2 multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 248 |
| >gnl|CDD|183773 PRK12824, PRK12824, acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Score = 75.2 bits (185), Expect = 3e-15
Identities = 47/207 (22%), Positives = 82/207 (39%), Gaps = 19/207 (9%)
Query: 177 PRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSS 236
+ ++TG+ RG+G A+ARE L G RV+ S + E
Sbjct: 2 KKIALVTGAKRGIGSAIARELLNDGYRVIATYFSGND---CAKDWFE------------- 45
Query: 237 KKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEI 296
+ +V DV + + + E G +DI +NNAG + + +++E
Sbjct: 46 EYGFTEDQVRLKELDVTDTEECAEALAEIEEEEGPVDILVNNAGITRD-SVFKRMSHQEW 104
Query: 297 EQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQL 356
+++TNL T+ M +Q G I N+ +G Y + K G+
Sbjct: 105 NDVINTNLNSVFNVTQPLFAAMCEQ-GYGRIINISSV-NGLKGQFGQTNYSAAKAGMIGF 162
Query: 357 QASLFKESKRSKVGVHTASPGMVLTDL 383
+L E R + V+ +PG + T +
Sbjct: 163 TKALASEGARYGITVNCIAPGYIATPM 189
|
Length = 245 |
| >gnl|CDD|237219 PRK12827, PRK12827, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 3e-15
Identities = 61/208 (29%), Positives = 94/208 (45%), Gaps = 17/208 (8%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
R V+ITG + GLG+A+A G V+V M + + G+ AAGG
Sbjct: 7 RRVLITGGSGGLGRAIAVRLAADGADVIVLDIHP----MRGRAEADAVAAGIEAAGG--- 59
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
K G+A DV + A + + V EFG +DI +NNAG + + EE +
Sbjct: 60 ------KALGLAFDVRDFAATRAALDAGVEEFGRLDILVNNAGIATD-AAFAELSIEEWD 112
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG-AGSGGSSTPLTAVYGSTKCGLRQL 356
++ NL G T+ A+ M +GG I N+ AG G+ + Y ++K GL L
Sbjct: 113 DVIDVNLDGFFNVTQAALPPMIRARRGGRIVNIASVAGVRGNRGQVN--YAASKAGLIGL 170
Query: 357 QASLFKESKRSKVGVHTASPGMVLTDLL 384
+L E + V+ +PG + T +
Sbjct: 171 TKTLANELAPRGITVNAVAPGAINTPMA 198
|
Length = 249 |
| >gnl|CDD|236145 PRK08063, PRK08063, enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 74.4 bits (183), Expect = 5e-15
Identities = 70/277 (25%), Positives = 117/277 (42%), Gaps = 37/277 (13%)
Query: 180 VVITGSTRGLGKALAREFLLSG-DRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKK 238
++TGS+RG+GKA+A G D V +RS ++ T E+E A G
Sbjct: 7 ALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIE--------ALG----- 53
Query: 239 NLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQ 298
K + +V + ++++ EFG +D+++NNA + +P ++ +
Sbjct: 54 ----RKALAVKANVGDVEKIKEMFAQIDEEFGRLDVFVNNAASGV-LRPAMELEESHWDW 108
Query: 299 IVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQA 358
++ N + C +EA ++M ++ GG I ++ GS T V G +K L L
Sbjct: 109 TMNINAKALLFCAQEAAKLM-EKVGGGKIISLSSLGSIRYLENYTTV-GVSKAALEALTR 166
Query: 359 SLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPRIRVVK 418
L E + V+ S G V TD L K N L + A+T R+ +
Sbjct: 167 YLAVELAPKGIAVNAVSGGAVDTDAL--------KHFPNREELLEDARAKTPAGRMVEPE 218
Query: 419 GSGKAINYLTPPRILLALVTAWLRRGR-WFDDQGRAL 454
A+ +L P A + RG+ D GR+L
Sbjct: 219 DVANAVLFLCSPE-------ADMIRGQTIIVDGGRSL 248
|
Length = 250 |
| >gnl|CDD|236216 PRK08277, PRK08277, D-mannonate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 74.9 bits (185), Expect = 5e-15
Identities = 59/225 (26%), Positives = 93/225 (41%), Gaps = 45/225 (20%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ VITG LG A+A+E +G +V + R+ E V E++ AAGG +
Sbjct: 11 KVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIK--------AAGGEAL 62
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTN--------------K 283
+ DV + +++ + +FG DI IN AG N +
Sbjct: 63 ---------AVKADVLDKESLEQARQQILEDFGPCDILINGAGGNHPKATTDNEFHELIE 113
Query: 284 GFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSS---- 339
K E E + NL+G++L T+ + M + KGG+I N+ SS
Sbjct: 114 PTKTFFDLDEEGFEFVFDLNLLGTLLPTQVFAKDMVGR-KGGNIINI-------SSMNAF 165
Query: 340 TPLTAV--YGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTD 382
TPLT V Y + K + L + + V+ +PG LT+
Sbjct: 166 TPLTKVPAYSAAKAAISNFTQWLAVHFAKVGIRVNAIAPGFFLTE 210
|
Length = 278 |
| >gnl|CDD|183772 PRK12823, benD, 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 74.2 bits (183), Expect = 6e-15
Identities = 59/199 (29%), Positives = 88/199 (44%), Gaps = 24/199 (12%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
VV+TG+ +G+G+ +A G RVV+ RS EL + + AAGG
Sbjct: 11 VVVTGAAQGIGRGVALRAAAEGARVVLVDRS---------ELVHEVAAELRAAGG----- 56
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQI 299
+ + D+ A Q AV FG ID+ INN G KP ++ E+IE
Sbjct: 57 ----EALALTADLETYAGAQAAMAAAVEAFGRIDVLINNVGGTIWAKPFEEYEEEQIEAE 112
Query: 300 VSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGG-SSTPLTAVYGSTKCGLRQLQA 358
+ +L ++ C R + M Q GG I N+ + G + P Y + K G+ L A
Sbjct: 113 IRRSLFPTLWCCRAVLPHMLAQ-GGGAIVNVSSIATRGINRVP----YSAAKGGVNALTA 167
Query: 359 SLFKESKRSKVGVHTASPG 377
SL E + V+ +PG
Sbjct: 168 SLAFEYAEHGIRVNAVAPG 186
|
Length = 260 |
| >gnl|CDD|187641 cd08936, CR_SDR_c, Porcine peroxisomal carbonyl reductase like, classical (c) SDR | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 8e-15
Identities = 56/203 (27%), Positives = 90/203 (44%), Gaps = 23/203 (11%)
Query: 181 VITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNL 240
++T ST G+G A+AR G VVV+SR ++V V L+ EG+
Sbjct: 14 LVTASTDGIGLAIARRLAQDGAHVVVSSRKQQNVDRAVATLQ---GEGL----------- 59
Query: 241 VHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIV 300
V G C V + D ++L AVN G +DI ++NA N F +L T E ++I+
Sbjct: 60 ---SVTGTVCHVGKAEDRERLVATAVNLHGGVDILVSNAAVNPFFGNILDSTEEVWDKIL 116
Query: 301 STNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAV--YGSTKCGLRQLQA 358
N+ + L T+ + M + G + S + P + Y +K L L
Sbjct: 117 DVNVKATALMTKAVVPEMEKRGGGSVVI----VSSVAAFHPFPGLGPYNVSKTALLGLTK 172
Query: 359 SLFKESKRSKVGVHTASPGMVLT 381
+L E + V+ +PG++ T
Sbjct: 173 NLAPELAPRNIRVNCLAPGLIKT 195
|
This subgroup contains porcine peroxisomal carbonyl reductase and similar proteins. The porcine enzyme efficiently reduces retinals. This subgroup also includes human dehydrogenase/reductase (SDR family) member 4 (DHRS4), and human DHRS4L1. DHRS4 is a peroxisomal enzyme with 3beta-hydroxysteroid dehydrogenase activity; it catalyzes the reduction of 3-keto-C19/C21-steroids into 3beta-hydroxysteroids more efficiently than it does the retinal reduction. The human DHRS4 gene cluster contains DHRS4, DHRS4L2 and DHRS4L1. DHRS4L2 and DHRS4L1 are paralogs of DHRS4, DHRS4L2 being the most recent member. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 256 |
| >gnl|CDD|181131 PRK07814, PRK07814, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 74.0 bits (182), Expect = 8e-15
Identities = 59/208 (28%), Positives = 97/208 (46%), Gaps = 28/208 (13%)
Query: 181 VITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNL 240
V+TG+ RGLG A+A F +G V++A+R T ++L+E + E + AAG ++
Sbjct: 14 VVTGAGRGLGAAIALAFAEAGADVLIAAR-------TESQLDE-VAEQIRAAG---RRAH 62
Query: 241 VHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIV 300
V +A D+ P L+ AV FG +DI +NN G PLL + +++
Sbjct: 63 V------VAADLAHPEATAGLAGQAVEAFGRLDIVVNNVG-GTMPNPLLSTSTKDLADAF 115
Query: 301 STNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGL----RQL 356
+ N+ + T A+ +M + GG + N+ G + A YG+ K L R
Sbjct: 116 TFNVATAHALTVAAVPLMLEHSGGGSVINISST-MGRLAGRGFAAYGTAKAALAHYTRLA 174
Query: 357 QASLFKESKRSKVGVHTASPGMVLTDLL 384
L ++ V+ +PG +LT L
Sbjct: 175 ALDL-----CPRIRVNAIAPGSILTSAL 197
|
Length = 263 |
| >gnl|CDD|235545 PRK05650, PRK05650, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 9e-15
Identities = 57/211 (27%), Positives = 92/211 (43%), Gaps = 26/211 (12%)
Query: 179 NVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKK 238
V+ITG+ GLG+A+A + G R+ +A + E T+ L E AGG
Sbjct: 2 RVMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLRE--------AGG---- 49
Query: 239 NLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQ 298
CDV + + + L+ ++G ID+ +NNAG G F +E
Sbjct: 50 -----DGFYQRCDVRDYSQLTALAQACEEKWGGIDVIVNNAGVASGGF----FEELSLED 100
Query: 299 ---IVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQ 355
++ NL+G + + + + + Q K G I N+ + +G P + Y K G+
Sbjct: 101 WDWQIAINLMGVVKGCKAFLPLFKRQ-KSGRIVNI-ASMAGLMQGPAMSSYNVAKAGVVA 158
Query: 356 LQASLFKESKRSKVGVHTASPGMVLTDLLLS 386
L +L E ++GVH P T+LL S
Sbjct: 159 LSETLLVELADDEIGVHVVCPSFFQTNLLDS 189
|
Length = 270 |
| >gnl|CDD|181295 PRK08213, PRK08213, gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 1e-14
Identities = 53/203 (26%), Positives = 91/203 (44%), Gaps = 21/203 (10%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ ++TG +RGLG +A +G RVV+++R +E + LE A G
Sbjct: 13 KTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLE--------ALG---- 60
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
IA DV + AD+++L+ + FG +DI +NNAG G P E +
Sbjct: 61 -----IDALWIAADVADEADIERLAEETLERFGHVDILVNNAGATWG-APAEDHPVEAWD 114
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG-AGSGGSSTPL--TAVYGSTKCGLR 354
++++ N+ G L ++ + G I N+ AG GG+ + T Y ++K +
Sbjct: 115 KVMNLNVRGLFLLSQAVAKRSMIPRGYGRIINVASVAGLGGNPPEVMDTIAYNTSKGAVI 174
Query: 355 QLQASLFKESKRSKVGVHTASPG 377
+L E + V+ +PG
Sbjct: 175 NFTRALAAEWGPHGIRVNAIAPG 197
|
Length = 259 |
| >gnl|CDD|181491 PRK08589, PRK08589, short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 73.7 bits (181), Expect = 2e-14
Identities = 51/211 (24%), Positives = 101/211 (47%), Gaps = 23/211 (10%)
Query: 181 VITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNL 240
VITG++ G+G+A A G V+ +E+V TV +++ N GG +K
Sbjct: 10 VITGASTGIGQASAIALAQEGAYVLAVD-IAEAVSETVDKIKSN--------GGKAKAYH 60
Query: 241 VHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIV 300
V D+ + V+ ++ +FG +D+ NNAG + + ++ + ++I+
Sbjct: 61 V---------DISDEQQVKDFASEIKEQFGRVDVLFNNAGVDNAAGRIHEYPVDVFDKIM 111
Query: 301 STNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASL 360
+ ++ G+ L T+ + +M +Q GG I N + SG ++ + Y + K + S+
Sbjct: 112 AVDMRGTFLMTKMLLPLMMEQ--GGSIIN-TSSFSGQAADLYRSGYNAAKGAVINFTKSI 168
Query: 361 FKESKRSKVGVHTASPGMVLTDLL--LSGST 389
E R + + +PG + T L+ L+G++
Sbjct: 169 AIEYGRDGIRANAIAPGTIETPLVDKLTGTS 199
|
Length = 272 |
| >gnl|CDD|180446 PRK06180, PRK06180, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 4e-14
Identities = 52/202 (25%), Positives = 81/202 (40%), Gaps = 25/202 (12%)
Query: 182 ITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLV 241
ITG + G G+ALA+ L +G RVV RS + +
Sbjct: 9 ITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEALHPDR----------------- 51
Query: 242 HAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTN-EEIEQIV 300
DV + + + A FG ID+ +NNAG G + ++ + E+ +
Sbjct: 52 ---ALARLLDVTDFDAIDAVVADAEATFGPIDVLVNNAGY--GHEGAIEESPLAEMRRQF 106
Query: 301 STNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASL 360
N+ G++ T+ + MR + + GHI N+ G G + P Y +K L + SL
Sbjct: 107 EVNVFGAVAMTKAVLPGMRAR-RRGHIVNITSMG-GLITMPGIGYYCGSKFALEGISESL 164
Query: 361 FKESKRSKVGVHTASPGMVLTD 382
KE + V PG TD
Sbjct: 165 AKEVAPFGIHVTAVEPGSFRTD 186
|
Length = 277 |
| >gnl|CDD|187644 cd08940, HBDH_SDR_c, d-3-hydroxybutyrate dehydrogenase (HBDH), classical (c) SDRs | Back alignment and domain information |
|---|
Score = 72.1 bits (177), Expect = 4e-14
Identities = 54/203 (26%), Positives = 90/203 (44%), Gaps = 18/203 (8%)
Query: 181 VITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNL 240
++TGST G+G +AR +G +V+ + V K G+
Sbjct: 6 LVTGSTSGIGLGIARALAAAGANIVLNGFGDAAEIEAVRAGLAA-KHGV----------- 53
Query: 241 VHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIV 300
KV D+ +PA ++ + +A +FG +DI +NNAG + P+ F E+ + I+
Sbjct: 54 ---KVLYHGADLSKPAAIEDMVAYAQRQFGGVDILVNNAGI-QHVAPIEDFPTEKWDAII 109
Query: 301 STNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASL 360
+ NL TR A+ M+ Q G I N+ G ++ + Y + K G+ L +
Sbjct: 110 ALNLSAVFHTTRLALPHMKKQ-GWGRIINIASV-HGLVASANKSAYVAAKHGVVGLTKVV 167
Query: 361 FKESKRSKVGVHTASPGMVLTDL 383
E+ + V + PG VLT L
Sbjct: 168 ALETAGTGVTCNAICPGWVLTPL 190
|
DHBDH, an NAD+ -dependent enzyme, catalyzes the interconversion of D-3-hydroxybutyrate and acetoacetate. It is a classical SDR, with the canonical NAD-binding motif and active site tetrad. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 258 |
| >gnl|CDD|226476 COG3967, DltE, Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 71.7 bits (176), Expect = 4e-14
Identities = 56/216 (25%), Positives = 94/216 (43%), Gaps = 36/216 (16%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
++ITG G+G ALA+ FL G+ V++ R+ EE L E K
Sbjct: 8 ILITGGASGIGLALAKRFLELGNTVIICGRN-----------EERLAEA---------KA 47
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEE---- 295
+ CDV + ++L + E+ ++++ INNAG + T E
Sbjct: 48 ENPE-IHTEVCDVADRDSRRELVEWLKKEYPNLNVLINNAGIQRNE----DLTGAEDLLD 102
Query: 296 -IEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPL--TAVYGSTKCG 352
EQ ++TNL+ I T + + QP+ I N+ SG + P+ T VY +TK
Sbjct: 103 DAEQEIATNLLAPIRLTALLLPHLLRQPE-ATIINVS---SGLAFVPMASTPVYCATKAA 158
Query: 353 LRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGS 388
+ +L ++ K + V V +P +V T + +
Sbjct: 159 IHSYTLALREQLKDTSVEVIELAPPLVDTTEGNTQA 194
|
Length = 245 |
| >gnl|CDD|132250 TIGR03206, benzo_BadH, 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Score = 71.5 bits (175), Expect = 5e-14
Identities = 53/208 (25%), Positives = 88/208 (42%), Gaps = 22/208 (10%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ ++TG G+G A R F G +V V + E+ ++ GG+++
Sbjct: 4 KTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRA--------KGGNAQ 55
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
ACD+ + V A G +D+ +NNAG +K F P + E
Sbjct: 56 ---------AFACDITDRDSVDTAVAAAEQALGPVDVLVNNAGWDK-FGPFTKTEPPLWE 105
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNM-DGAGSGGSSTPLTAVYGSTKCGLRQL 356
++++ NL G++ + M ++ G I N+ A GSS AVY + K GL
Sbjct: 106 RLIAINLTGALHMHHAVLPGMVER-GAGRIVNIASDAARVGSSG--EAVYAACKGGLVAF 162
Query: 357 QASLFKESKRSKVGVHTASPGMVLTDLL 384
++ +E R + V+ PG T LL
Sbjct: 163 SKTMAREHARHGITVNVVCPGPTDTALL 190
|
Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate. Length = 250 |
| >gnl|CDD|187622 cd05364, SDR_c11, classical (c) SDR, subgroup 11 | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 6e-14
Identities = 56/204 (27%), Positives = 90/204 (44%), Gaps = 18/204 (8%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
+ITGS+ G+G A F G R+ + R +E LEE + + AG S KK
Sbjct: 6 AIITGSSSGIGAGTAILFARLGARLALTGRDAE-------RLEETRQS-CLQAGVSEKKI 57
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQI 299
L+ + D+ E ++ + + +FG +DI +NNAG EE +++
Sbjct: 58 LL------VVADLTEEEGQDRIISTTLAKFGRLDILVNNAGIL-AKGGGEDQDIEEYDKV 110
Query: 300 VSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQAS 359
++ NL I T+ A+ + G I N+ +GG S P Y +K L Q
Sbjct: 111 MNLNLRAVIYLTKLAVPHLIKTK--GEIVNVSSV-AGGRSFPGVLYYCISKAALDQFTRC 167
Query: 360 LFKESKRSKVGVHTASPGMVLTDL 383
E V V++ SPG+++T
Sbjct: 168 TALELAPKGVRVNSVSPGVIVTGF 191
|
SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 253 |
| >gnl|CDD|187611 cd05353, hydroxyacyl-CoA-like_DH_SDR_c-like, (3R)-hydroxyacyl-CoA dehydrogenase-like, classical(c)-like SDRs | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 7e-14
Identities = 56/206 (27%), Positives = 86/206 (41%), Gaps = 26/206 (12%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVV------ASRSSESVRMTVTELEENLKEGMMA 231
R V++TG+ GLG+A A F G +VVV S +S ++E G A
Sbjct: 6 RVVLVTGAGGGLGRAYALAFAERGAKVVVNDLGGDRKGSGKSSSAADKVVDEIKAAGGKA 65
Query: 232 AGGSSKKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQF 291
V D +K+ A++ FG +DI +NNAG + + +
Sbjct: 66 VANYD--------------SV---EDGEKIVKTAIDAFGRVDILVNNAGILRD-RSFAKM 107
Query: 292 TNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKC 351
+ E+ + ++ +L GS TR A MR Q G I AG G+ A Y + K
Sbjct: 108 SEEDWDLVMRVHLKGSFKVTRAAWPYMRKQKFGRIINTSSAAGLYGNFG--QANYSAAKL 165
Query: 352 GLRQLQASLFKESKRSKVGVHTASPG 377
GL L +L E + + +T +P
Sbjct: 166 GLLGLSNTLAIEGAKYNITCNTIAPA 191
|
Beta oxidation of fatty acids in eukaryotes occurs by a four-reaction cycle, that may take place in mitochondria or in peroxisomes. (3R)-hydroxyacyl-CoA dehydrogenase is part of rat peroxisomal multifunctional MFE-2, it is a member of the NAD-dependent SDRs, but contains an additional small C-terminal domain that completes the active site pocket and participates in dimerization. The atypical, additional C-terminal extension allows for more extensive dimerization contact than other SDRs. MFE-2 catalyzes the second and third reactions of the peroxisomal beta oxidation cycle. Proteins in this subgroup have a typical catalytic triad, but have a His in place of the usual upstream Asn. This subgroup also contains members identified as 17-beta-hydroxysteroid dehydrogenases, including human peroxisomal 17-beta-hydroxysteroid dehydrogenase type 4 (17beta-HSD type 4, aka MFE-2, encoded by HSD17B4 gene) which is involved in fatty acid beta-oxidation and steroid metabolism. This subgroup also includes two SDR domains of the Neurospora crassa and Saccharomyces cerevisiae multifunctional beta-oxidation protein (MFP, aka Fox2). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 250 |
| >gnl|CDD|183832 PRK12935, PRK12935, acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Score = 71.2 bits (174), Expect = 7e-14
Identities = 64/240 (26%), Positives = 104/240 (43%), Gaps = 46/240 (19%)
Query: 181 VITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNL 240
++TG +G+GKA+ G +VV+ SS+ E ENL + G
Sbjct: 10 IVTGGAKGIGKAITVALAQEGAKVVINYNSSK-------EAAENLVNELGKEGH------ 56
Query: 241 VHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGT--NKGFKPLLQFTNEEIEQ 298
V + DV + D +L AVN FG +DI +NNAG ++ FK L E+ E+
Sbjct: 57 ---DVYAVQADVSKVEDANRLVEEAVNHFGKVDILVNNAGITRDRTFKKL---NREDWER 110
Query: 299 IVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG----AGSGGSSTPLTAVYGSTKCGLR 354
++ NL S+ T A+ + + G I ++ AG G + Y + K G+
Sbjct: 111 VIDVNL-SSVFNTTSAVLPYITEAEEGRIISISSIIGQAGGFGQTN-----YSAAKAGML 164
Query: 355 QLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPRI 414
SL E ++ V V+ PG + T++ + E+PE V + +V +I
Sbjct: 165 GFTKSLALELAKTNVTVNAICPGFIDTEM---------------VAEVPEEVRQKIVAKI 209
|
Length = 247 |
| >gnl|CDD|180817 PRK07060, PRK07060, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 1e-13
Identities = 48/206 (23%), Positives = 83/206 (40%), Gaps = 28/206 (13%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
++V++TG++ G+G+A A G RVV A+R L+ E G
Sbjct: 10 KSVLVTGASSGIGRACAVALAQRGARVVAAAR-------NAAALDRLAGE----TGCE-- 56
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
+ DV + A ++ A+ G+ D +N AG + L T E +
Sbjct: 57 ---------PLRLDVGDDAAIRA----ALAAAGAFDGLVNCAGIASL-ESALDMTAEGFD 102
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQ 357
++++ N G+ L R R M +GG I N+ P Y ++K L +
Sbjct: 103 RVMAVNARGAALVARHVARAMIAAGRGGSIVNVSSQA-ALVGLPDHLAYCASKAALDAIT 161
Query: 358 ASLFKESKRSKVGVHTASPGMVLTDL 383
L E + V++ +P + LT +
Sbjct: 162 RVLCVELGPHGIRVNSVNPTVTLTPM 187
|
Length = 245 |
| >gnl|CDD|187583 cd05322, SDH_SDR_c_like, Sorbitol 6-phosphate dehydrogenase (SDH), classical (c) SDRs | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 2e-13
Identities = 47/200 (23%), Positives = 76/200 (38%), Gaps = 18/200 (9%)
Query: 181 VITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNL 240
V+ G + LG+ L +G V VA +SE+ E+ E
Sbjct: 6 VVIGGGQTLGEFLCHGLAEAGYDVAVADINSENAEKVADEINAEYGE------------- 52
Query: 241 VHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIV 300
K G D V LS F +D+ + +AG K + F + ++ +
Sbjct: 53 ---KAYGFGADATNEQSVIALSKGVDEIFKRVDLLVYSAGIAKS-AKITDFELGDFDRSL 108
Query: 301 STNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASL 360
NLVG LC RE ++M G I ++ + SG + + Y + K G L SL
Sbjct: 109 QVNLVGYFLCAREFSKLMIRDGIQGRIIQIN-SKSGKVGSKHNSGYSAAKFGGVGLTQSL 167
Query: 361 FKESKRSKVGVHTASPGMVL 380
+ + V++ G +L
Sbjct: 168 ALDLAEHGITVNSLMLGNLL 187
|
Sorbitol 6-phosphate dehydrogenase (SDH, aka glucitol 6-phosphate dehydrogenase) catalyzes the NAD-dependent interconversion of D-fructose 6-phosphate to D-sorbitol 6-phosphate. SDH is a member of the classical SDRs, with the characteristic catalytic tetrad, but without a complete match to the typical NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 257 |
| >gnl|CDD|181335 PRK08264, PRK08264, short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 69.5 bits (171), Expect = 2e-13
Identities = 50/207 (24%), Positives = 80/207 (38%), Gaps = 31/207 (14%)
Query: 178 RNVVITGSTRGLGKALAREFLLSG-DRVVVASRSSESVRMTVTELEENLKEGMMAAGGSS 236
+ V++TG+ RG+G+A + L G +V A+R ESV
Sbjct: 7 KVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESV---------------------- 44
Query: 237 KKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEI 296
+ +V + DV +PA V + A + I +NNAG + LL+ + +
Sbjct: 45 --TDLGPRVVPLQLDVTDPASVAAAAEAA----SDVTILVNNAGIFRTGSLLLEGDEDAL 98
Query: 297 EQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQL 356
+ TN G + R V+ GG I N+ S + P Y ++K L
Sbjct: 99 RAEMETNYFGPLAMARAFAPVLAANG-GGAIVNVLSVLS-WVNFPNLGTYSASKAAAWSL 156
Query: 357 QASLFKESKRSKVGVHTASPGMVLTDL 383
+L E V PG + TD+
Sbjct: 157 TQALRAELAPQGTRVLGVHPGPIDTDM 183
|
Length = 238 |
| >gnl|CDD|182531 PRK10538, PRK10538, malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Score = 69.8 bits (171), Expect = 2e-13
Identities = 57/202 (28%), Positives = 93/202 (46%), Gaps = 26/202 (12%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
V++TG+T G G+ + R F+ G +V+ R E ++ EL +NL
Sbjct: 3 VLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELGDNLYI------------ 50
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQI 299
DV A ++++ E+ +ID+ +NNAG G +P + + E+ E +
Sbjct: 51 --------AQLDVRNRAAIEEMLASLPAEWRNIDVLVNNAGLALGLEPAHKASVEDWETM 102
Query: 300 VSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTA--VYGSTKCGLRQLQ 357
+ TN G + TR + M ++ GHI N+ GS S P VYG+TK +RQ
Sbjct: 103 IDTNNKGLVYMTRAVLPGMVERNH-GHIINI---GSTAGSWPYAGGNVYGATKAFVRQFS 158
Query: 358 ASLFKESKRSKVGVHTASPGMV 379
+L + + V V PG+V
Sbjct: 159 LNLRTDLHGTAVRVTDIEPGLV 180
|
Length = 248 |
| >gnl|CDD|237187 PRK12743, PRK12743, oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 2e-13
Identities = 49/207 (23%), Positives = 85/207 (41%), Gaps = 22/207 (10%)
Query: 177 PRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSS 236
+ ++T S G+GKA A G + + S E E + E + + G
Sbjct: 2 AQVAIVTASDSGIGKACALLLAQQGFDIGITWHSDE-------EGAKETAEEVRSHG--- 51
Query: 237 KKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEI 296
+ D+ + + + + + G ID+ +NNAG P L +E
Sbjct: 52 ------VRAEIRQLDLSDLPEGAQALDKLIQRLGRIDVLVNNAGAMTK-APFLDMDFDEW 104
Query: 297 EQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPL--TAVYGSTKCGLR 354
+I + ++ G+ LC++ A R M Q +GG I N+ S TPL + Y + K L
Sbjct: 105 RKIFTVDVDGAFLCSQIAARHMVKQGQGGRIINIT---SVHEHTPLPGASAYTAAKHALG 161
Query: 355 QLQASLFKESKRSKVGVHTASPGMVLT 381
L ++ E + V+ +PG + T
Sbjct: 162 GLTKAMALELVEHGILVNAVAPGAIAT 188
|
Length = 256 |
| >gnl|CDD|180371 PRK06057, PRK06057, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 69.8 bits (171), Expect = 2e-13
Identities = 66/235 (28%), Positives = 93/235 (39%), Gaps = 35/235 (14%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
R VITG G+G A AR G VVV E+ + E+ GG
Sbjct: 8 RVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAAADEV-----------GGLF- 55
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
+ DV + V L + A +GS+DI NNAG + + T +
Sbjct: 56 ----------VPTDVTDEDAVNALFDTAAETYGSVDIAFNNAGISPPEDDSILNTGLDAW 105
Query: 298 QIVS-TNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQL 356
Q V NL LC + A+ M Q KG I GS+T + Y ++K G+ +
Sbjct: 106 QRVQDVNLTSVYLCCKAALPHMVRQGKGSIINTASFVAVMGSATSQIS-YTASKGGVLAM 164
Query: 357 QASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLV 411
L + R + V+ PG V T LL +++F + PE AR LV
Sbjct: 165 SRELGVQFARQGIRVNALCPGPVNTPLL--------QELF---AKDPERAARRLV 208
|
Length = 255 |
| >gnl|CDD|181139 PRK07832, PRK07832, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 3e-13
Identities = 56/210 (26%), Positives = 95/210 (45%), Gaps = 24/210 (11%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ +TG+ G+G+A A G + + R ++ + TV + A GG+
Sbjct: 1 KRCFVTGAASGIGRATALRLAAQGAELFLTDRDADGLAQTVADAR--------ALGGT-- 50
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFA---VNEFGSIDIWINNAGTNKGFKPLLQFTNE 294
V A D+ +D ++ FA GS+D+ +N AG + + + + T+E
Sbjct: 51 ---VPEHRAL---DI---SDYDAVAAFAADIHAAHGSMDVVMNIAGIS-AWGTVDRLTHE 100
Query: 295 EIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLR 354
+ ++V NL+G I + M +GGH+ N+ A +G + P A Y ++K GLR
Sbjct: 101 QWRRMVDVNLMGPIHVIETFVPPMVAAGRGGHLVNVSSA-AGLVALPWHAAYSASKFGLR 159
Query: 355 QLQASLFKESKRSKVGVHTASPGMVLTDLL 384
L L + R +GV PG V T L+
Sbjct: 160 GLSEVLRFDLARHGIGVSVVVPGAVKTPLV 189
|
Length = 272 |
| >gnl|CDD|180458 PRK06194, PRK06194, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 3e-13
Identities = 56/208 (26%), Positives = 92/208 (44%), Gaps = 26/208 (12%)
Query: 181 VITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNL 240
VITG+ G G A AR G ++V+A +++ V EL A G
Sbjct: 10 VITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELR--------AQG------- 54
Query: 241 VHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIV 300
A+V G+ DV + A V+ L++ A+ FG++ + NNAG G + + + + E ++
Sbjct: 55 --AEVLGVRTDVSDAAQVEALADAALERFGAVHLLFNNAGVGAG-GLVWENSLADWEWVL 111
Query: 301 STNLVGSILCTREAMRVM-----RDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQ 355
NL G I R +M +D GHI N + +G + P +Y +K +
Sbjct: 112 GVNLWGVIHGVRAFTPLMLAAAEKDPAYEGHIVNT-ASMAGLLAPPAMGIYNVSKHAVVS 170
Query: 356 LQASLFKESK--RSKVGVHTASPGMVLT 381
L +L+++ +VG P V T
Sbjct: 171 LTETLYQDLSLVTDQVGASVLCPYFVPT 198
|
Length = 287 |
| >gnl|CDD|187607 cd05349, BKR_2_SDR_c, putative beta-ketoacyl acyl carrier protein [ACP]reductase (BKR), subgroup 2, classical (c) SDR | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 4e-13
Identities = 53/207 (25%), Positives = 89/207 (42%), Gaps = 30/207 (14%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
V++TG++RGLG A+AR F G RVVV S TE E + AA +
Sbjct: 3 VLVTGASRGLGAAIARSFAREGARVVVNYYRS-------TESAEAV-----AAEAGERAI 50
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE-- 297
+ A DV + VQ + A N FG +D +NNA + F P + T + I+
Sbjct: 51 AIQA-------DVRDRDQVQAMIEEAKNHFGPVDTIVNNALIDFPFDPDQRKTFDTIDWE 103
Query: 298 ---QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAV--YGSTKCG 352
Q + + G++ + + +++ G + N+ G+ P+ Y + K
Sbjct: 104 DYQQQLEGAVKGALNLLQAVLPDFKER-GSGRVINI---GTNLFQNPVVPYHDYTTAKAA 159
Query: 353 LRQLQASLFKESKRSKVGVHTASPGMV 379
L ++ KE + V+ S G++
Sbjct: 160 LLGFTRNMAKELGPYGITVNMVSGGLL 186
|
This subgroup includes Rhizobium sp. NGR234 FabG1. The Escherichai coli K12 BKR, FabG, belongs to a different subgroup. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 246 |
| >gnl|CDD|135637 PRK05876, PRK05876, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 69.2 bits (169), Expect = 5e-13
Identities = 60/218 (27%), Positives = 94/218 (43%), Gaps = 27/218 (12%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
R VITG G+G A EF G RVV+ +R V + A G
Sbjct: 7 RGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAV--------NHLRAEG---- 54
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
V G+ CDV +V L++ A G +D+ +NAG G P+++ T+++
Sbjct: 55 -----FDVHGVMCDVRHREEVTHLADEAFRLLGHVDVVFSNAGIVVG-GPIVEMTHDDWR 108
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHI-FNMDGAG---SGGSSTPLTAVYGSTKCGL 353
++ +L GSI + + +Q GGH+ F AG + G YG K G+
Sbjct: 109 WVIDVDLWGSIHTVEAFLPRLLEQGTGGHVVFTASFAGLVPNAGLGA-----YGVAKYGV 163
Query: 354 RQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQ 391
L +L +E +GV P +V T+L+ + I+
Sbjct: 164 VGLAETLAREVTADGIGVSVLCPMVVETNLVANSERIR 201
|
Length = 275 |
| >gnl|CDD|235631 PRK05866, PRK05866, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 8e-13
Identities = 51/201 (25%), Positives = 92/201 (45%), Gaps = 24/201 (11%)
Query: 175 AGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGG 234
G R +++TG++ G+G+A A +F G VV +R + L + + + + AGG
Sbjct: 39 TGKR-ILLTGASSGIGEAAAEQFARRGATVVAVARRED--------LLDAVADRITRAGG 89
Query: 235 SSKKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTN- 293
+ A + CD+ + V L G +DI INNAG + +PL + +
Sbjct: 90 DA-----MA----VPCDLSDLDAVDALVADVEKRIGGVDILINNAGRSIR-RPLAESLDR 139
Query: 294 -EEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCG 352
++E+ + N + R M ++ GHI N+ G ++PL +VY ++K
Sbjct: 140 WHDVERTMVLNYYAPLRLIRGLAPGMLER-GDGHIINVATWGVLSEASPLFSVYNASKAA 198
Query: 353 LRQLQASLFKESKRSKVGVHT 373
L + + E++ GVH+
Sbjct: 199 LSAVSRVI--ETEWGDRGVHS 217
|
Length = 293 |
| >gnl|CDD|187591 cd05330, cyclohexanol_reductase_SDR_c, cyclohexanol reductases, including levodione reductase, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 9e-13
Identities = 54/207 (26%), Positives = 87/207 (42%), Gaps = 23/207 (11%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ V+ITG GLG A A G ++ + + E + L E +
Sbjct: 4 KVVLITGGGSGLGLATAVRLAKEGAKLSLVDLNEEGLEAAKAALLEIAPD---------- 53
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
A+V I DV + A V+ + V +FG ID + NNAG F +E +
Sbjct: 54 -----AEVLLIKADVSDEAQVEAYVDATVEQFGRIDGFFNNAGIEGKQNLTEDFGADEFD 108
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAG---SGGSSTPLTAVYGSTKCGLR 354
++VS NL G + ++VMR+Q G I N G G+ + Y + K G+
Sbjct: 109 KVVSINLRGVFYGLEKVLKVMREQ-GSGMIVNTASVGGIRGVGNQSG----YAAAKHGVV 163
Query: 355 QLQASLFKESKRSKVGVHTASPGMVLT 381
L + E + + ++ +PG +LT
Sbjct: 164 GLTRNSAVEYGQYGIRINAIAPGAILT 190
|
Cyloclohexanol reductases,including (6R)-2,2,6-trimethyl-1,4-cyclohexanedione (levodione) reductase of Corynebacterium aquaticum, catalyze the reversible oxidoreduction of hydroxycyclohexanone derivatives. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 257 |
| >gnl|CDD|236210 PRK08267, PRK08267, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 1e-12
Identities = 63/279 (22%), Positives = 106/279 (37%), Gaps = 42/279 (15%)
Query: 177 PRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSS 236
+++ ITG+ G+G+A A F G RV + + EL G
Sbjct: 1 MKSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAAEL-----------GAG- 48
Query: 237 KKNLVHAKVAGIACDVCEPADVQK-LSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEE 295
N + DV + A L++FA G +D+ NNAG +G P E
Sbjct: 49 --NAWTGAL-----DVTDRAAWDAALADFAAATGGRLDVLFNNAGILRG-GPFEDIPLEA 100
Query: 296 IEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQ 355
++++ N+ G + A+ ++ P G + N A S P AVY +TK +R
Sbjct: 101 HDRVIDINVKGVLNGAHAALPYLKATP-GARVINTSSA-SAIYGQPGLAVYSATKFAVRG 158
Query: 356 LQASLFKESKRSKVGVHTASPGMVLTDLLLSGS------TIQNKQMFNIICELPETVART 409
L +L E +R + V P V T +L S + + + PE VA
Sbjct: 159 LTEALDLEWRRHGIRVADVMPLFVDTAMLDGTSNEVDAGSTKR-LGVRLT---PEDVAEA 214
Query: 410 LVPRIRVVKGSGKAINYLTPPRILL-----ALVTAWLRR 443
+ ++ +++ + L L ++RR
Sbjct: 215 VWAAVQ----HPTRLHWPVGKQAKLLAFLARLSPGFVRR 249
|
Length = 260 |
| >gnl|CDD|180617 PRK06550, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 2e-12
Identities = 52/188 (27%), Positives = 75/188 (39%), Gaps = 48/188 (25%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ V+ITG+ G+G A AR FL G +V + + +L N
Sbjct: 6 KTVLITGAASGIGLAQARAFLAQGAQVYGVDKQDKP------DLSGNF------------ 47
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
H D+ + + + S+DI N AG +KPLL + EE +
Sbjct: 48 ----HFLQL----DLSDDLEP------LFDWVPSVDILCNTAGILDDYKPLLDTSLEEWQ 93
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG-----AGSGGSSTPLTAVYGSTKCG 352
I TNL + L TR + M ++ K G I NM AG GG A Y ++K
Sbjct: 94 HIFDTNLTSTFLLTRAYLPQMLER-KSGIIINMCSIASFVAGGGG------AAYTASKHA 146
Query: 353 L----RQL 356
L +QL
Sbjct: 147 LAGFTKQL 154
|
Length = 235 |
| >gnl|CDD|177895 PLN02253, PLN02253, xanthoxin dehydrogenase | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 2e-12
Identities = 54/207 (26%), Positives = 90/207 (43%), Gaps = 21/207 (10%)
Query: 181 VITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNL 240
++TG G+G+++ R F G +V + + L +N+ + + GG
Sbjct: 22 LVTGGATGIGESIVRLFHKHGAKVCIVDLQDD--------LGQNVCDSL---GGEPNVCF 70
Query: 241 VHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTN-EEIEQI 299
H CDV DV + +F V++FG++DI +NNAG P ++ E E++
Sbjct: 71 FH-------CDVTVEDDVSRAVDFTVDKFGTLDIMVNNAGLTGPPCPDIRNVELSEFEKV 123
Query: 300 VSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQAS 359
N+ G L + A R+M KG + A + G P Y +K + L S
Sbjct: 124 FDVNVKGVFLGMKHAARIMIPLKKGSIVSLCSVASAIGGLGP--HAYTGSKHAVLGLTRS 181
Query: 360 LFKESKRSKVGVHTASPGMVLTDLLLS 386
+ E + + V+ SP V T L L+
Sbjct: 182 VAAELGKHGIRVNCVSPYAVPTALALA 208
|
Length = 280 |
| >gnl|CDD|180823 PRK07074, PRK07074, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 3e-12
Identities = 51/209 (24%), Positives = 85/209 (40%), Gaps = 33/209 (15%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
R ++TG+ G+G+ALAR FL +GDRV+ + ++ L +
Sbjct: 3 RTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFADALGD-------------- 48
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
A+ +ACD+ + A + A E G +D+ + NAG + L T
Sbjct: 49 -----ARFVPVACDLTDAASLAAALANAAAERGPVDVLVANAGAARAAS--LHDTTPASW 101
Query: 298 QI-VSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAV----YGSTKCG 352
+ + NL + LC + M + +G + N+ GS + A+ Y + K G
Sbjct: 102 RADNALNLEAAYLCVEAVLEGMLKRSRGA-VVNI------GSVNGMAALGHPAYSAAKAG 154
Query: 353 LRQLQASLFKESKRSKVGVHTASPGMVLT 381
L L E R + + +PG V T
Sbjct: 155 LIHYTKLLAVEYGRFGIRANAVAPGTVKT 183
|
Length = 257 |
| >gnl|CDD|213929 TIGR04316, dhbA_paeA, 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 3e-12
Identities = 46/200 (23%), Positives = 81/200 (40%), Gaps = 24/200 (12%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
V++TG+ +G+G A+AR +G RV R+ E + V +L
Sbjct: 1 VLVTGAAQGIGYAVARALAEAGARVAAVDRNFEQLLELVADLRRY--------------- 45
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQI 299
A DV + A V ++ E+G ID+ +N AG + + ++E+ +
Sbjct: 46 --GYPFATYKLDVADSAAVDEVVQRLEREYGPIDVLVNVAGILR-LGAIDSLSDEDWQAT 102
Query: 300 VSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLT--AVYGSTKCGLRQLQ 357
+ N G ++ M+ + + G I + GS ++ P A Y ++K L L
Sbjct: 103 FAVNTFGVFNVSQAVSPRMKRR-RSGAIVTV---GSNAANVPRMGMAAYAASKAALTMLT 158
Query: 358 ASLFKESKRSKVGVHTASPG 377
L E + + SPG
Sbjct: 159 KCLGLELAPYGIRCNVVSPG 178
|
Members of this family are 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase (EC 1.3.1.28), the third enzyme in the biosynthesis of 2,3-dihydroxybenzoic acid (DHB) from chorismate. The first two enzymes are isochorismate synthase (EC 5.4.4.2) and isochorismatase (EC 3.3.2.1). Synthesis is often followed by adenylation by the enzyme DHBA-AMP ligase (EC 2.7.7.58) to activate (DHB) for a non-ribosomal peptide synthetase. Length = 250 |
| >gnl|CDD|181077 PRK07677, PRK07677, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 3e-12
Identities = 47/163 (28%), Positives = 71/163 (43%), Gaps = 25/163 (15%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
V+ITG + G+GKA+A+ F G VV+ R+ E + E+E+ G
Sbjct: 4 VIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQF--PG----------- 50
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFK-PLLQFTNEEIEQ 298
+V + DV P DVQK+ +FG ID INNA N F P +
Sbjct: 51 ----QVLTVQMDVRNPEDVQKMVEQIDEKFGRIDALINNAAGN--FICPAEDLSVNGWNS 104
Query: 299 IVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD-----GAGSG 336
++ L G+ C++ + ++ G+I NM AG G
Sbjct: 105 VIDIVLNGTFYCSQAVGKYWIEKGIKGNIINMVATYAWDAGPG 147
|
Length = 252 |
| >gnl|CDD|237220 PRK12828, PRK12828, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 3e-12
Identities = 46/206 (22%), Positives = 86/206 (41%), Gaps = 26/206 (12%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ V ITG GLG+A A G RV + R + + T+ G+ A
Sbjct: 8 KVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLP--------GVPADAL--- 56
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGF--KPLLQFTNEE 295
++ GI D+ +P ++ + +FG +D +N AG F + +
Sbjct: 57 ------RIGGI--DLVDPQAARRAVDEVNRQFGRLDALVNIAG---AFVWGTIADGDADT 105
Query: 296 IEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQ 355
+++ N+ ++ ++ A+ + GG I N+ GAG+ + P Y + K G+ +
Sbjct: 106 WDRMYGVNVKTTLNASKAALPALT-ASGGGRIVNI-GAGAALKAGPGMGAYAAAKAGVAR 163
Query: 356 LQASLFKESKRSKVGVHTASPGMVLT 381
L +L E + V+ P ++ T
Sbjct: 164 LTEALAAELLDRGITVNAVLPSIIDT 189
|
Length = 239 |
| >gnl|CDD|235712 PRK06138, PRK06138, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 3e-12
Identities = 53/209 (25%), Positives = 91/209 (43%), Gaps = 25/209 (11%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
R ++TG+ G+G+A A+ F G RVVVA R +E+ +AAGG
Sbjct: 6 RVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAA---------IAAGG--- 53
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
+ DV V+ L +F +G +D+ +NNAG G ++ + +
Sbjct: 54 ------RAFARQGDVGSAEAVEALVDFVAARWGRLDVLVNNAGFGCG-GTVVTTDEADWD 106
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNM--DGAGSGGSSTPLTAVYGSTKCGLRQ 355
++ N+ G L + A+ +M+ Q GG I N A +GG A Y ++K +
Sbjct: 107 AVMRVNVGGVFLWAKYAIPIMQRQ-GGGSIVNTASQLALAGG---RGRAAYVASKGAIAS 162
Query: 356 LQASLFKESKRSKVGVHTASPGMVLTDLL 384
L ++ + + V+ +PG + T
Sbjct: 163 LTRAMALDHATDGIRVNAVAPGTIDTPYF 191
|
Length = 252 |
| >gnl|CDD|180604 PRK06523, PRK06523, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 4e-12
Identities = 53/214 (24%), Positives = 85/214 (39%), Gaps = 44/214 (20%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ ++TG T+G+G A L +G RVV +RS ++L EG
Sbjct: 10 KRALVTGGTKGIGAATVARLLEAGARVVTTARSRP----------DDLPEG--------- 50
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNK----GFKPLLQFTN 293
V +A D+ ++ + G +DI ++ G + GF L T+
Sbjct: 51 -------VEFVAADLTTAEGCAAVARAVLERLGGVDILVHVLGGSSAPAGGFAAL---TD 100
Query: 294 EEIEQIVSTNLVGSILCTREAMRVMRDQPKGG--HIFNMDGAGSGGSSTPL---TAVYGS 348
EE + ++ NL+ ++ R + M + G H+ S PL T Y +
Sbjct: 101 EEWQDELNLNLLAAVRLDRALLPGMIARGSGVIIHV------TSIQRRLPLPESTTAYAA 154
Query: 349 TKCGLRQLQASLFKESKRSKVGVHTASPGMVLTD 382
K L SL KE V V+T SPG + T+
Sbjct: 155 AKAALSTYSKSLSKEVAPKGVRVNTVSPGWIETE 188
|
Length = 260 |
| >gnl|CDD|168186 PRK05693, PRK05693, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 4e-12
Identities = 56/203 (27%), Positives = 86/203 (42%), Gaps = 27/203 (13%)
Query: 179 NVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKK 238
V+ITG + G+G+ALA F +G V +R +E V E + AAG
Sbjct: 3 VVLITGCSSGIGRALADAFKAAGYEVWATARKAEDV------------EALAAAG----- 45
Query: 239 NLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQ 298
+ DV + A + +L+ E G +D+ INNAG PLL E + +
Sbjct: 46 ------FTAVQLDVNDGAALARLAEELEAEHGGLDVLINNAGYG-AMGPLLDGGVEAMRR 98
Query: 299 IVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQA 358
TN+ + TR ++R G + N+ G+ SG TP Y ++K + L
Sbjct: 99 QFETNVFAVVGVTRALFPLLRR--SRGLVVNI-GSVSGVLVTPFAGAYCASKAAVHALSD 155
Query: 359 SLFKESKRSKVGVHTASPGMVLT 381
+L E V V PG + +
Sbjct: 156 ALRLELAPFGVQVMEVQPGAIAS 178
|
Length = 274 |
| >gnl|CDD|235633 PRK05872, PRK05872, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 4e-12
Identities = 47/206 (22%), Positives = 84/206 (40%), Gaps = 22/206 (10%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ VV+TG+ RG+G LAR G ++ + + EL
Sbjct: 10 KVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAELGG-------------- 55
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
+V + DV + A +Q + AV FG ID+ + NAG G + Q +
Sbjct: 56 ----DDRVLTVVADVTDLAAMQAAAEEAVERFGGIDVVVANAGIASG-GSVAQVDPDAFR 110
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQ 357
+++ NL+G R + + + + G++ + + ++ P A Y ++K G+
Sbjct: 111 RVIDVNLLGVFHTVRATLPALIE--RRGYVLQVSSLAAFAAA-PGMAAYCASKAGVEAFA 167
Query: 358 ASLFKESKRSKVGVHTASPGMVLTDL 383
+L E V V +A + TDL
Sbjct: 168 NALRLEVAHHGVTVGSAYLSWIDTDL 193
|
Length = 296 |
| >gnl|CDD|181159 PRK07890, PRK07890, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 5e-12
Identities = 47/198 (23%), Positives = 75/198 (37%), Gaps = 20/198 (10%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
VV++G GLG+ LA +G VV+A+R T L+E E + G
Sbjct: 8 VVVSGVGPGLGRTLAVRAARAGADVVLAAR-------TAERLDEVAAE-IDDLGRR---- 55
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQI 299
+ D+ + L A+ FG +D +NNA KPL +
Sbjct: 56 -----ALAVPTDITDEDQCANLVALALERFGRVDALVNNAFRVPSMKPLADADFAHWRAV 110
Query: 300 VSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQAS 359
+ N++G++ T+ + GG I ++ S P Y K L S
Sbjct: 111 IELNVLGTLRLTQAFTPALA--ESGGSIVMINSM-VLRHSQPKYGAYKMAKGALLAASQS 167
Query: 360 LFKESKRSKVGVHTASPG 377
L E + V++ +PG
Sbjct: 168 LATELGPQGIRVNSVAPG 185
|
Length = 258 |
| >gnl|CDD|187609 cd05351, XR_like_SDR_c, xylulose reductase-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 5e-12
Identities = 51/208 (24%), Positives = 86/208 (41%), Gaps = 31/208 (14%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ ++TG+ +G+G+A + +G RVV SR+ + V E
Sbjct: 8 KRALVTGAGKGIGRATVKALAKAGARVVAVSRTQADLDSLVRE----------------- 50
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
GI + +D + A+ G +D+ +NNA +P L+ T E +
Sbjct: 51 -------CPGIEPVCVDLSDWDA-TEEALGSVGPVDLLVNNAAVAI-LQPFLEVTKEAFD 101
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLT--AVYGSTKCGLRQ 355
+ N+ I ++ R M + G I N+ S S LT VY STK L
Sbjct: 102 RSFDVNVRAVIHVSQIVARGMIARGVPGSIVNVS---SQASQRALTNHTVYCSTKAALDM 158
Query: 356 LQASLFKESKRSKVGVHTASPGMVLTDL 383
L + E K+ V++ +P +V+TD+
Sbjct: 159 LTKVMALELGPHKIRVNSVNPTVVMTDM 186
|
Members of this subgroup include proteins identified as L-xylulose reductase (XR) and carbonyl reductase; they are members of the SDR family. XR, catalyzes the NADP-dependent reduction of L-xyulose and other sugars. Tetrameric mouse carbonyl reductase is involved in the metabolism of biogenic and xenobiotic carbonyl compounds. This subgroup also includes tetrameric chicken liver D-erythrulose reductase, which catalyzes the reduction of D-erythrulose to D-threitol. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Length = 244 |
| >gnl|CDD|235933 PRK07097, PRK07097, gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 6e-12
Identities = 50/205 (24%), Positives = 90/205 (43%), Gaps = 22/205 (10%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ +ITG++ G+G A+A+ + +G +V + E V + E G+
Sbjct: 11 KIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRE---LGI-------- 59
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
+ G CDV + VQ + + E G IDI +NNAG K P+L+ + E+
Sbjct: 60 ------EAHGYVCDVTDEDGVQAMVSQIEKEVGVIDILVNNAGIIKR-IPMLEMSAEDFR 112
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSG-GSSTPLTAVYGSTKCGLRQL 356
Q++ +L + ++ + M + G I N+ S G T + Y + K GL+ L
Sbjct: 113 QVIDIDLNAPFIVSKAVIPSMIKK-GHGKIINICSMMSELGRET--VSAYAAAKGGLKML 169
Query: 357 QASLFKESKRSKVGVHTASPGMVLT 381
++ E + + + PG + T
Sbjct: 170 TKNIASEYGEANIQCNGIGPGYIAT 194
|
Length = 265 |
| >gnl|CDD|135765 PRK06113, PRK06113, 7-alpha-hydroxysteroid dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 65.3 bits (159), Expect = 8e-12
Identities = 48/206 (23%), Positives = 90/206 (43%), Gaps = 21/206 (10%)
Query: 181 VITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNL 240
+ITG+ G+GK +A F +G VVV+ ++++ V E+++ GG
Sbjct: 15 IITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQ--------LGG------ 60
Query: 241 VHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIV 300
+ CD+ ++ L++FA+++ G +DI +NNAG G KP + +
Sbjct: 61 ---QAFACRCDITSEQELSALADFALSKLGKVDILVNNAG-GGGPKP-FDMPMADFRRAY 115
Query: 301 STNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASL 360
N+ ++ M ++ GG I + + + Y S+K L ++
Sbjct: 116 ELNVFSFFHLSQLVAPEM-EKNGGGVILTITSM-AAENKNINMTSYASSKAAASHLVRNM 173
Query: 361 FKESKRSKVGVHTASPGMVLTDLLLS 386
+ + V+ +PG +LTD L S
Sbjct: 174 AFDLGEKNIRVNGIAPGAILTDALKS 199
|
Length = 255 |
| >gnl|CDD|187592 cd05331, DH-DHB-DH_SDR_c, 2,3 dihydro-2,3 dihydrozybenzoate dehydrogenases, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 8e-12
Identities = 47/207 (22%), Positives = 79/207 (38%), Gaps = 31/207 (14%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
V++TG+ +G+G+A+AR L +G V+ + L
Sbjct: 1 VIVTGAAQGIGRAVARHLLQAGATVIALDLPFVLLLEYGDPLRL---------------- 44
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQI 299
DV + A V+++ + + E G ID +N AG + + E+ EQ
Sbjct: 45 --------TPLDVADAAAVREVCSRLLAEHGPIDALVNCAGVLR-PGATDPLSTEDWEQT 95
Query: 300 VSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLT--AVYGSTKCGLRQLQ 357
+ N+ G + M+D+ + G I + S + P A YG++K L L
Sbjct: 96 FAVNVTGVFNLLQAVAPHMKDR-RTGAIVTV---ASNAAHVPRISMAAYGASKAALASLS 151
Query: 358 ASLFKESKRSKVGVHTASPGMVLTDLL 384
L E V + SPG T +
Sbjct: 152 KCLGLELAPYGVRCNVVSPGSTDTAMQ 178
|
2,3 dihydro-2,3 dihydrozybenzoate dehydrogenase shares the characteristics of the classical SDRs. This subgroup includes Escherichai coli EntA which catalyzes the NAD+-dependent oxidation of 2,3-dihydro-2,3-dihydroxybenzoate to 2,3-dihydroxybenzoate during biosynthesis of the siderophore Enterobactin. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 244 |
| >gnl|CDD|180462 PRK06198, PRK06198, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 8e-12
Identities = 47/179 (26%), Positives = 80/179 (44%), Gaps = 22/179 (12%)
Query: 180 VVITGSTRGLGKALAREFLLSGDR-VVVASRSSESVRMTVTELEENLKEGMMAAGGSSKK 238
++TG T+GLG A+AR F G +V+ R++E ELE
Sbjct: 9 ALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEAL-------------- 54
Query: 239 NLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAG-TNKGFKPLLQFTNEEIE 297
AK + D+ + D +++ A FG +D +N AG T++G +L + E +
Sbjct: 55 ---GAKAVFVQADLSDVEDCRRVVAAADEAFGRLDALVNAAGLTDRG--TILDTSPELFD 109
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQL 356
+ + N+ +EA+++MR + G I N+ + G P A Y ++K L L
Sbjct: 110 RHFAVNVRAPFFLMQEAIKLMRRRKAEGTIVNIGSMSAHGGQ-PFLAAYCASKGALATL 167
|
Length = 260 |
| >gnl|CDD|180984 PRK07454, PRK07454, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 9e-12
Identities = 57/241 (23%), Positives = 97/241 (40%), Gaps = 34/241 (14%)
Query: 177 PRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSS 236
+ITG++ G+GKA A F +G + + +RS +++ EL
Sbjct: 6 MPRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRS------------- 52
Query: 237 KKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAG---TNKGFKPLLQFTN 293
K A + D+ P + + +FG D+ INNAG T PLL+
Sbjct: 53 ----TGVKAAAYSIDLSNPEAIAPGIAELLEQFGCPDVLINNAGMAYTG----PLLEMPL 104
Query: 294 EEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGL 353
+ + ++ NL C + MR + GG I N+ + + ++ P Y +K L
Sbjct: 105 SDWQWVIQLNLTSVFQCCSAVLPGMRAR-GGGLIINV-SSIAARNAFPQWGAYCVSKAAL 162
Query: 354 RQLQASLFKESKRSKVGVHTASPGMVLTDLLLS---GSTIQNKQMFNIICELPETVARTL 410
L +E + + V T + G V T L + + M + PE VA+T+
Sbjct: 163 AAFTKCLAEEERSHGIRVCTITLGAVNTPLWDTETVQADFDRSAMLS-----PEQVAQTI 217
Query: 411 V 411
+
Sbjct: 218 L 218
|
Length = 241 |
| >gnl|CDD|180744 PRK06914, PRK06914, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 2e-11
Identities = 57/209 (27%), Positives = 86/209 (41%), Gaps = 31/209 (14%)
Query: 181 VITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNL 240
++TG++ G G E G V+ R+ E +ENL
Sbjct: 7 IVTGASSGFGLLTTLELAKKGYLVIATMRNPEK--------QENLLSQATQLNLQQ---- 54
Query: 241 VHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGT-NKGFKPLLQFTNEEIEQI 299
+ KV DV + + + E G ID+ +NNAG N GF + + EE +
Sbjct: 55 -NIKV--QQLDVTDQNSIHNFQLV-LKEIGRIDLLVNNAGYANGGF--VEEIPVEEYRKQ 108
Query: 300 VSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQAS 359
TN+ G+I T+ + MR Q K G I N+ + SG P + Y S+K L
Sbjct: 109 FETNVFGAISVTQAVLPYMRKQ-KSGKIINI-SSISGRVGFPGLSPYVSSKYALEG---- 162
Query: 360 LFKESKRSKV---GVHTA--SPGMVLTDL 383
F ES R ++ G+ A PG T++
Sbjct: 163 -FSESLRLELKPFGIDVALIEPGSYNTNI 190
|
Length = 280 |
| >gnl|CDD|234422 TIGR03971, SDR_subfam_1, oxidoreductase, SDR family | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 3e-11
Identities = 64/266 (24%), Positives = 108/266 (40%), Gaps = 34/266 (12%)
Query: 182 ITGSTRGLGKA----LAREF--LLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGS 235
ITG+ RG G+A LA E +++ D S T +L+E + + A G
Sbjct: 8 ITGAARGQGRAHAVRLAAEGADIIAIDLCAPLSDYPTYPLATREDLDETAR-LVEALG-- 64
Query: 236 SKKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEE 295
KV DV + A+V+ + V +FG +D+ + NAG + + + E+
Sbjct: 65 -------RKVLARKADVRDLAEVRAVVEDGVEQFGRLDVVVANAGV-LSYGRSWELSEEQ 116
Query: 296 IEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQ 355
+ ++ NL G + + M ++ GG I + + +G + P A Y + K GL
Sbjct: 117 WDTVLDINLTGVWRTCKAVVPHMIERGNGGSII-ITSSVAGLKALPGLAHYAAAKHGLVG 175
Query: 356 LQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPRIR 415
L +L E + V++ P V T + I + M + PE AR +P
Sbjct: 176 LTKTLANELAEYGIRVNSIHPYSVDTPM------IAPEAMREAFLKYPE-AARAFMP--- 225
Query: 416 VVKGSGKAINYLTPPRILLALVTAWL 441
++ PP + V WL
Sbjct: 226 -----ALPVSGFVPPEDVADAV-LWL 245
|
Members of this protein subfamily are putative oxidoreductases belonging to the larger SDR family. Members of the present subfamily may occur several to a genome and are largely restricted to genomes that contain members of families TIGR03962, TIGR03967, and TIGR03969. Many members have been annotated by homology as carveol dehydrogenases. Length = 265 |
| >gnl|CDD|181518 PRK08643, PRK08643, acetoin reductase; Validated | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 4e-11
Identities = 51/202 (25%), Positives = 91/202 (45%), Gaps = 21/202 (10%)
Query: 181 VITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNL 240
++TG+ +G+G A+A+ + G +V + + E+ + +L + GG
Sbjct: 6 LVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSK--------DGG------ 51
Query: 241 VHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIV 300
K + DV + V V+ FG +++ +NNAG P+ T E+ +++
Sbjct: 52 ---KAIAVKADVSDRDQVFAAVRQVVDTFGDLNVVVNNAGVAPT-TPIETITEEQFDKVY 107
Query: 301 STNLVGSILCTREAMRVMRDQPKGGHIFNMDG-AGSGGSSTPLTAVYGSTKCGLRQLQAS 359
+ N+ G I + A + GG I N AG G+ P AVY STK +R L +
Sbjct: 108 NINVGGVIWGIQAAQEAFKKLGHGGKIINATSQAGVVGN--PELAVYSSTKFAVRGLTQT 165
Query: 360 LFKESKRSKVGVHTASPGMVLT 381
++ + V+ +PG+V T
Sbjct: 166 AARDLASEGITVNAYAPGIVKT 187
|
Length = 256 |
| >gnl|CDD|181349 PRK08278, PRK08278, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 5e-11
Identities = 51/221 (23%), Positives = 87/221 (39%), Gaps = 55/221 (24%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSE-------SVRMTVTELEENLKEGMM 230
+ + ITG++RG+G A+A G +V+A++++E ++ E+E
Sbjct: 7 KTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIE-------- 58
Query: 231 AAGGSSKKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQ 290
AAGG + + DV + V AV FG IDI +NNA +
Sbjct: 59 AAGG---------QALPLVGDVRDEDQVAAAVAKAVERFGGIDICVNNASA-------IN 102
Query: 291 FTNEE---------IEQIVSTNLVGSILCTREAMRVMRDQPKGGHIF------NMDGAGS 335
T E ++QI N+ G+ L ++ + ++ HI N+D
Sbjct: 103 LTGTEDTPMKRFDLMQQI---NVRGTFLVSQACLPHLKKSE-NPHILTLSPPLNLDPKWF 158
Query: 336 GGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASP 376
+ A YG + C L L +E + + V+ P
Sbjct: 159 APHTAYTMAKYGMSLCTL-----GLAEEFRDDGIAVNALWP 194
|
Length = 273 |
| >gnl|CDD|181324 PRK08251, PRK08251, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 6e-11
Identities = 57/209 (27%), Positives = 93/209 (44%), Gaps = 23/209 (11%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ ++ITG++ GLG +AREF G + + +R ++ LEE LK ++A
Sbjct: 3 QKILITGASSGLGAGMAREFAAKGRDLALCARRTD-------RLEE-LKAELLARYPG-- 52
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
KVA A DV + V ++ +E G +D I NAG KG L +
Sbjct: 53 -----IKVAVAALDVNDHDQVFEVFAEFRDELGGLDRVIVNAGIGKG-ARLGTGKFWANK 106
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGH---IFNMDGAGSGGSSTPLTAVYGSTKCGLR 354
TN V ++ AM + R+Q GH I ++ + G A Y ++K G+
Sbjct: 107 ATAETNFVAALAQCEAAMEIFREQ-GSGHLVLISSV--SAVRGLPGVKAA-YAASKAGVA 162
Query: 355 QLQASLFKESKRSKVGVHTASPGMVLTDL 383
L L E ++ + V T PG + +++
Sbjct: 163 SLGEGLRAELAKTPIKVSTIEPGYIRSEM 191
|
Length = 248 |
| >gnl|CDD|187615 cd05357, PR_SDR_c, pteridine reductase (PR), classical (c) SDRs | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 6e-11
Identities = 50/203 (24%), Positives = 79/203 (38%), Gaps = 24/203 (11%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
++TG+ + +G+A+A G RVVV SE E + LK+ + A
Sbjct: 3 ALVTGAAKRIGRAIAEALAAEGYRVVVHYNRSE------AEAQR-LKDELNALRN----- 50
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGF--KPLLQFTNEEIE 297
+ D+ + A L A FG D+ +NNA F PL Q + +
Sbjct: 51 ----SAVLVQADLSDFAACADLVAAAFRAFGRCDVLVNNASA---FYPTPLGQGSEDAWA 103
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQ 357
++ NL L + R + G I N+ A + T A Y +K L L
Sbjct: 104 ELFGINLKAPYLLIQAFARRLAGSRN-GSIINIIDAMTDRPLTGYFA-YCMSKAALEGLT 161
Query: 358 ASLFKESKRSKVGVHTASPGMVL 380
S E + V+ +PG++L
Sbjct: 162 RSAALELA-PNIRVNGIAPGLIL 183
|
Pteridine reductases (PRs), members of the SDR family, catalyzes the NAD-dependent reduction of folic acid, dihydrofolate and related compounds. In Leishmania, pteridine reductase (PTR1) acts to circumvent the anti-protozoan drugs that attack dihydrofolate reductase activity. Proteins in this subgroup have an N-terminal NAD-binding motif and a YxxxK active site motif, but have an Asp instead of the usual upstream catalytic Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 234 |
| >gnl|CDD|180773 PRK06949, PRK06949, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 8e-11
Identities = 52/213 (24%), Positives = 98/213 (46%), Gaps = 26/213 (12%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ ++TG++ GLG A+ +G +VV+ASR E ++ E+E A GG++
Sbjct: 10 KVALVTGASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIE--------AEGGAA- 60
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
H ++ DV + ++ A E G+IDI +NN+G + K L+ T + +
Sbjct: 61 ----HV----VSLDVTDYQSIKAAVAHAETEAGTIDILVNNSGVSTTQK-LVDVTPADFD 111
Query: 298 QIVSTNLVGSILCTREAMR--VMR-----DQPKGGHIFNMDGAGSGGSSTPLTAVYGSTK 350
+ TN G+ +E + + R + GG I N+ + +G P +Y +K
Sbjct: 112 FVFDTNTRGAFFVAQEVAKRMIARAKGAGNTKPGGRIINI-ASVAGLRVLPQIGLYCMSK 170
Query: 351 CGLRQLQASLFKESKRSKVGVHTASPGMVLTDL 383
+ + ++ E R + V+ PG + T++
Sbjct: 171 AAVVHMTRAMALEWGRHGINVNAICPGYIDTEI 203
|
Length = 258 |
| >gnl|CDD|181305 PRK08226, PRK08226, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 1e-10
Identities = 51/203 (25%), Positives = 84/203 (41%), Gaps = 20/203 (9%)
Query: 181 VITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNL 240
+ITG+ +G+G+ +AR F G +++ S E + +L + L
Sbjct: 10 LITGALQGIGEGIARVFARHGANLILLDISPE-----IEKLADELCGR------------ 52
Query: 241 VHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIV 300
+ + DV +PA V A + G IDI +NNAG + L ++E+ + +
Sbjct: 53 -GHRCTAVVADVRDPASVAAAIKRAKEKEGRIDILVNNAGVCR-LGSFLDMSDEDRDFHI 110
Query: 301 STNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASL 360
N+ G T+ + M + K G I M + P Y TK + L SL
Sbjct: 111 DINIKGVWNVTKAVLPEMIAR-KDGRIVMMSSVTGDMVADPGETAYALTKAAIVGLTKSL 169
Query: 361 FKESKRSKVGVHTASPGMVLTDL 383
E +S + V+ PG V T +
Sbjct: 170 AVEYAQSGIRVNAICPGYVRTPM 192
|
Length = 263 |
| >gnl|CDD|182051 PRK09730, PRK09730, putative NAD(P)-binding oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 1e-10
Identities = 52/209 (24%), Positives = 84/209 (40%), Gaps = 18/209 (8%)
Query: 181 VITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNL 240
++TG +RG+G+A A G V V + + V L + AGG
Sbjct: 5 LVTGGSRGIGRATALLLAQEGYTVAVNYQQNLHAAQEVVNL-------ITQAGG------ 51
Query: 241 VHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIV 300
K + D+ + V + + +NNAG + T E I +++
Sbjct: 52 ---KAFVLQADISDENQVVAMFTAIDQHDEPLAALVNNAGILFTQCTVENLTAERINRVL 108
Query: 301 STNLVGSILCTREAMRVM--RDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQA 358
STN+ G LC REA++ M + GG I N+ A S + Y ++K + L
Sbjct: 109 STNVTGYFLCCREAVKRMALKHGGSGGAIVNVSSAASRLGAPGEYVDYAASKGAIDTLTT 168
Query: 359 SLFKESKRSKVGVHTASPGMVLTDLLLSG 387
L E + V+ PG + T++ SG
Sbjct: 169 GLSLEVAAQGIRVNCVRPGFIYTEMHASG 197
|
Length = 247 |
| >gnl|CDD|235703 PRK06125, PRK06125, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 1e-10
Identities = 57/209 (27%), Positives = 88/209 (42%), Gaps = 25/209 (11%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ V+ITG+++G+G A A F G + + +R ++++ E L + AA G
Sbjct: 8 KRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADAL--------EALAADLRAAHG--- 56
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
VA A D+ P ++L+ A G IDI +NNAG G L +
Sbjct: 57 -----VDVAVHALDLSSPEAREQLAAEA----GDIDILVNNAGAIPG-GGLDDVDDAAWR 106
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGST-KCGLRQL 356
+ G I TR A M+ + G I N+ G+ G + + GS L
Sbjct: 107 AGWELKVFGYIDLTRLAYPRMKAR-GSGVIVNV--IGAAGENPDADYICGSAGNAALMAF 163
Query: 357 QASLFKESKRSKVGVHTASPGMVLTDLLL 385
+L +S V V +PG V TD +L
Sbjct: 164 TRALGGKSLDDGVRVVGVNPGPVATDRML 192
|
Length = 259 |
| >gnl|CDD|235794 PRK06398, PRK06398, aldose dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 1e-10
Identities = 32/153 (20%), Positives = 60/153 (39%), Gaps = 30/153 (19%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ ++TG ++G+GKA+ G V+ S
Sbjct: 7 KVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEPS------------------------ 42
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
+ V DV V K ++ ++++G IDI +NNAG + + +E +
Sbjct: 43 ----YNDVDYFKVDVSNKEQVIKGIDYVISKYGRIDILVNNAGIES-YGAIHAVEEDEWD 97
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNM 330
+I++ N+ G L ++ + M Q G I N+
Sbjct: 98 RIINVNVNGIFLMSKYTIPYMLKQ-DKGVIINI 129
|
Length = 258 |
| >gnl|CDD|188170 TIGR01832, kduD, 2-deoxy-D-gluconate 3-dehydrogenase | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 2e-10
Identities = 51/207 (24%), Positives = 92/207 (44%), Gaps = 25/207 (12%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ ++TG+ GLG+ +A +G +V A RS + T ++ + A G
Sbjct: 6 KVALVTGANTGLGQGIAVGLAEAGADIVGAGRSE----PSET------QQQVEALGR--- 52
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
+ + D+ + ++ L + AV EFG IDI +NNAG + +F+ ++ +
Sbjct: 53 ------RFLSLTADLSDIEAIKALVDSAVEEFGHIDILVNNAGIIRRAD-AEEFSEKDWD 105
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGS--GGSSTPLTAVYGSTKCGLRQ 355
+++ NL T+ A + Q +GG I N+ S GG P Y ++K +
Sbjct: 106 DVMNVNLKSVFFLTQAAAKHFLKQGRGGKIINIASMLSFQGGIRVP---SYTASKHAVAG 162
Query: 356 LQASLFKESKRSKVGVHTASPGMVLTD 382
L L E + V+ +PG + T+
Sbjct: 163 LTKLLANEWAAKGINVNAIAPGYMATN 189
|
This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 248 |
| >gnl|CDD|187646 cd08942, RhlG_SDR_c, RhlG and related beta-ketoacyl reductases, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 2e-10
Identities = 47/206 (22%), Positives = 86/206 (41%), Gaps = 28/206 (13%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ V++TG +RG+G+ +A+ FL +G RV++++R +E+ EL S
Sbjct: 7 KIVLVTGGSRGIGRMIAQGFLEAGARVIISARKAEACADAAEEL--------------SA 52
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
A I D+ ++ L +D+ +NNAG G PL F +
Sbjct: 53 YGECIA----IPADLSSEEGIEALVARVAERSDRLDVLVNNAGATWG-APLEAFPESGWD 107
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGH------IFNMDGAGSGGSSTPLTAVYGSTKC 351
+++ N+ T+ + ++R + I ++ G G YG++K
Sbjct: 108 KVMDINVKSVFFLTQALLPLLRAAATAENPARVINIGSIAGIVVSGLE---NYSYGASKA 164
Query: 352 GLRQLQASLFKESKRSKVGVHTASPG 377
+ QL L KE + V+ +PG
Sbjct: 165 AVHQLTRKLAKELAGEHITVNAIAPG 190
|
Pseudomonas aeruginosa RhlG is an SDR-family beta-ketoacyl reductase involved in Rhamnolipid biosynthesis. RhlG is similar to but distinct from the FabG family of beta-ketoacyl-acyl carrier protein (ACP) of type II fatty acid synthesis. RhlG and related proteins are classical SDRs, with a canonical active site tetrad and glycine-rich NAD(P)-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 250 |
| >gnl|CDD|187629 cd05371, HSD10-like_SDR_c, 17hydroxysteroid dehydrogenase type 10 (HSD10)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 2e-10
Identities = 50/217 (23%), Positives = 81/217 (37%), Gaps = 34/217 (15%)
Query: 181 VITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNL 240
V+TG GLG A L G +VV+ + E K G
Sbjct: 6 VVTGGASGLGLATVERLLAQGAKVVILDLPNS-------PGETVAKLG------------ 46
Query: 241 VHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNK-----GFKPLLQFTNEE 295
+ DV DV+ A +FG +DI +N AG K + E
Sbjct: 47 --DNCRFVPVDVTSEKDVKAALALAKAKFGRLDIVVNCAGIAVAAKTYNKKGQQPHSLEL 104
Query: 296 IEQIVSTNLVGSILCTREAMRVM-RDQP-----KGGHIFNMDGAGSGGSSTPLTAVYGST 349
+++++ NL+G+ R A M +++P +G I A G A Y ++
Sbjct: 105 FQRVINVNLIGTFNVIRLAAGAMGKNEPDQGGERGVIINTASVAAFEGQ--IGQAAYSAS 162
Query: 350 KCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLS 386
K G+ + + ++ + V T +PG+ T LL
Sbjct: 163 KGGIVGMTLPIARDLAPQGIRVVTIAPGLFDTPLLAG 199
|
HSD10, also known as amyloid-peptide-binding alcohol dehydrogenase (ABAD), was previously identified as a L-3-hydroxyacyl-CoA dehydrogenase, HADH2. In fatty acid metabolism, HADH2 catalyzes the third step of beta-oxidation, the conversion of a hydroxyl to a keto group in the NAD-dependent oxidation of L-3-hydroxyacyl CoA. In addition to alcohol dehydrogenase and HADH2 activites, HSD10 has steroid dehydrogenase activity. Although the mechanism is unclear, HSD10 is implicated in the formation of amyloid beta-petide in the brain (which is linked to the development of Alzheimer's disease). Although HSD10 is normally concentrated in the mitochondria, in the presence of amyloid beta-peptide it translocates into the plasma membrane, where it's action may generate cytotoxic aldehydes and may lower estrogen levels through its use of 17-beta-estradiol as a substrate. HSD10 is a member of the SRD family, but differs from other SDRs by the presence of two insertions of unknown function. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 252 |
| >gnl|CDD|131680 TIGR02632, RhaD_aldol-ADH, rhamnulose-1-phosphate aldolase/alcohol dehydrogenase | Back alignment and domain information |
|---|
Score = 62.6 bits (152), Expect = 3e-10
Identities = 53/213 (24%), Positives = 83/213 (38%), Gaps = 22/213 (10%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
R +TG G+G+ AR G VV+A + E+ E+ N + G
Sbjct: 415 RVAFVTGGAGGIGRETARRLAAEGAHVVLADLNLEAAEAVAAEI--NGQFGA-------- 464
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
+ + DV + V+ +G +DI +NNAG P + T +E +
Sbjct: 465 -----GRAVALKMDVTDEQAVKAAFADVALAYGGVDIVVNNAGIATS-SPFEETTLQEWQ 518
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQ 357
+ G L REA R MR+Q GG+I + + + + Y + K L
Sbjct: 519 LNLDILATGYFLVAREAFRQMREQGLGGNIV-FIASKNAVYAGKNASAYSAAKAAEAHLA 577
Query: 358 ASLFKESKRSKVGVHTASPGMVLTDLLLSGSTI 390
L E + V+T +P D +L GS I
Sbjct: 578 RCLAAEGGTYGIRVNTVNP-----DAVLQGSGI 605
|
Length = 676 |
| >gnl|CDD|237188 PRK12745, PRK12745, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 3e-10
Identities = 37/152 (24%), Positives = 62/152 (40%), Gaps = 23/152 (15%)
Query: 181 VITGSTRGLGKALAREFLLSG-DRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
++TG RG+G +AR +G D + E + T EL G
Sbjct: 6 LVTGGRRGIGLGIARALAAAGFDLAINDRPDDEELAATQQELRA---LG----------- 51
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAG---TNKGFKPLLQFTNEEI 296
+V DV + + + + + A +G ID +NNAG +G LL T E
Sbjct: 52 ---VEVIFFPADVADLSAHEAMLDAAQAAWGRIDCLVNNAGVGVKVRG--DLLDLTPESF 106
Query: 297 EQIVSTNLVGSILCTREAMRVMRDQPKGGHIF 328
+++++ NL G T+ + M QP+ +
Sbjct: 107 DRVLAINLRGPFFLTQAVAKRMLAQPEPEELP 138
|
Length = 256 |
| >gnl|CDD|180761 PRK06935, PRK06935, 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 4e-10
Identities = 52/206 (25%), Positives = 89/206 (43%), Gaps = 31/206 (15%)
Query: 181 VITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNL 240
++TG GLG+ A +G +++ + T +E + L
Sbjct: 19 IVTGGNTGLGQGYAVALAKAGADIIITTHG--------TNWDET-------------RRL 57
Query: 241 VHA---KVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
+ KV + D+ +P +K+ A+ EFG IDI +NNAGT + PLL++ +E+
Sbjct: 58 IEKEGRKVTFVQVDLTKPESAEKVVKEALEEFGKIDILVNNAGTIRR-APLLEYKDEDWN 116
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGS--GGSSTPLTAVYGSTKCGLRQ 355
++ NL ++ +VM Q G I N+ S GG P Y ++K G+
Sbjct: 117 AVMDINLNSVYHLSQAVAKVMAKQ-GSGKIINIASMLSFQGGKFVP---AYTASKHGVAG 172
Query: 356 LQASLFKESKRSKVGVHTASPGMVLT 381
L + E + V+ +PG + T
Sbjct: 173 LTKAFANELAAYNIQVNAIAPGYIKT 198
|
Length = 258 |
| >gnl|CDD|132368 TIGR03325, BphB_TodD, cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 4e-10
Identities = 52/210 (24%), Positives = 86/210 (40%), Gaps = 32/210 (15%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
V++TG GLG+A+ F+ G RV V +S+ + + + AA G
Sbjct: 8 VLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGL------------QELEAAHG----- 50
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEI--- 296
V G+ DV D ++ V FG ID I NAG L+ ++ I
Sbjct: 51 ---DAVVGVEGDVRSLDDHKEAVARCVAAFGKIDCLIPNAGIWDYSTALVDIPDDRIDEA 107
Query: 297 -EQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAG--SGGSSTPLTAVYGSTKCGL 353
+++ N+ G +L + A+ + +G IF + AG G TA + +
Sbjct: 108 FDEVFHINVKGYLLAVKAALPALV-ASRGSVIFTISNAGFYPNGGGPLYTAAKHAVVGLV 166
Query: 354 RQLQASLFKESKRSKVGVHTASPGMVLTDL 383
++L L V V+ +PG + +DL
Sbjct: 167 KELAFEL-----APYVRVNGVAPGGMSSDL 191
|
Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase. Length = 262 |
| >gnl|CDD|187613 cd05355, SDR_c1, classical (c) SDR, subgroup 1 | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 4e-10
Identities = 51/211 (24%), Positives = 83/211 (39%), Gaps = 21/211 (9%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ +ITG G+G+A+A F G V + E + E K+ + G
Sbjct: 27 KKALITGGDSGIGRAVAIAFAREGADVAINYLPEE------EDDAEETKKLIEEEGR--- 77
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
K I D+ + + + L V EFG +DI +NNA + + T E++E
Sbjct: 78 ------KCLLIPGDLGDESFCRDLVKEVVKEFGKLDILVNNAAYQHPQESIEDITTEQLE 131
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNM-DGAGSGGSSTPLTAVYGSTKCGLRQL 356
+ TN+ T+ A+ + KG I N GS L Y +TK +
Sbjct: 132 KTFRTNIFSMFYLTKAALPHL---KKGSSIINTTSVTAYKGSPHLLD--YAATKGAIVAF 186
Query: 357 QASLFKESKRSKVGVHTASPGMVLTDLLLSG 387
L + + V+ +PG + T L+ S
Sbjct: 187 TRGLSLQLAEKGIRVNAVAPGPIWTPLIPSS 217
|
These proteins are members of the classical SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 270 |
| >gnl|CDD|187664 cd09763, DHRS1-like_SDR_c, human dehydrogenase/reductase (SDR family) member 1 (DHRS1) -like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 5e-10
Identities = 53/214 (24%), Positives = 88/214 (41%), Gaps = 28/214 (13%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSE-SVRMTVTELEENLKEGMMAAGGSSKK 238
++TG++RG+G+ +A + +G V + R+ + T E+E A GG
Sbjct: 6 ALVTGASRGIGRGIALQLGEAGATVYITGRTILPQLPGTAEEIE--------ARGG---- 53
Query: 239 NLVHAKVAGIACDVCEPADVQKL-SNFAVNEFGSIDIWINNA--GTNKGF----KPLLQF 291
K + CD + +V+ L A + G +DI +NNA KP +
Sbjct: 54 -----KCIPVRCDHSDDDEVEALFERVAREQQGRLDILVNNAYAAVQLILVGVAKPFWEE 108
Query: 292 TNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKC 351
+ I + L C+ A +M K G I + + +GG YG K
Sbjct: 109 PPTIWDDINNVGLRAHYACSVYAAPLMVKAGK-GLIVII--SSTGGLEYLFNVAYGVGKA 165
Query: 352 GLRQLQASLFKESKRSKVGVHTASPGMVLTDLLL 385
+ ++ A + E K V V + PG V T+L+L
Sbjct: 166 AIDRMAADMAHELKPHGVAVVSLWPGFVRTELVL 199
|
This subgroup includes human DHRS1 and related proteins. These are members of the classical SDR family, with a canonical Gly-rich NAD-binding motif and the typical YXXXK active site motif. However, the rest of the catalytic tetrad is not strongly conserved. DHRS1 mRNA has been detected in many tissues, liver, heart, skeletal muscle, kidney and pancreas; a longer transcript is predominantly expressed in the liver , a shorter one in the heart. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 265 |
| >gnl|CDD|180753 PRK06924, PRK06924, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 5e-10
Identities = 54/215 (25%), Positives = 97/215 (45%), Gaps = 32/215 (14%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
R V+ITG+++GLG+A+A + L G V+ SR+ +T+L E
Sbjct: 2 RYVIITGTSQGLGEAIANQLLEKGTHVISISRTENK---ELTKLAEQ-----------YN 47
Query: 238 KNLVHAKVAGIACDVCEPADVQK-----LSNFAVNEFGSIDIWINNAGTNKGFKPLLQFT 292
NL + D+ + +++ LS+ + SI + INNAG KP+ +
Sbjct: 48 SNLTF-----HSLDLQDVHELETNFNEILSSIQEDNVSSIHL-INNAGMVAPIKPIEKAE 101
Query: 293 NEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLT--AVYGSTK 350
+EE+ V NL+ ++ T M+ +D + N+ SG + P + Y S+K
Sbjct: 102 SEELITNVHLNLLAPMILTSTFMKHTKDWKVDKRVINIS---SGAAKNPYFGWSAYCSSK 158
Query: 351 CGLRQLQASLFKESKRSKVGVHTAS--PGMVLTDL 383
GL ++ E + + V + PG++ T++
Sbjct: 159 AGLDMFTQTVATEQEEEEYPVKIVAFSPGVMDTNM 193
|
Length = 251 |
| >gnl|CDD|181225 PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 6e-10
Identities = 50/208 (24%), Positives = 90/208 (43%), Gaps = 24/208 (11%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+N++ITGS +G+G LA G +++ ++E + V +L + EG+ A
Sbjct: 10 KNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQ---EGIKA------ 60
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
HA +V +V+ + G ID+ INNAG + P +F +E
Sbjct: 61 ----HA----APFNVTHKQEVEAAIEHIEKDIGPIDVLINNAGIQRRH-PFTEFPEQEWN 111
Query: 298 QIVSTNLVGSILCTREAMRVM--RDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQ 355
+++ N L ++ R M R K +I +M + TP Y ++K ++
Sbjct: 112 DVIAVNQTAVFLVSQAVARYMVKRQAGKIINICSMQSELGRDTITP----YAASKGAVKM 167
Query: 356 LQASLFKESKRSKVGVHTASPGMVLTDL 383
L + E R + V+ +PG T++
Sbjct: 168 LTRGMCVELARHNIQVNGIAPGYFKTEM 195
|
Length = 254 |
| >gnl|CDD|235962 PRK07201, PRK07201, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 7e-10
Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 17/103 (16%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ V+ITG++ G+G+A A + +G V + +R+ E++ V E+ A GG
Sbjct: 372 KVVLITGASSGIGRATAIKVAEAGATVFLVARNGEALDELVAEIR--------AKGG--- 420
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAG 280
CD+ + A V + E G +D +NNAG
Sbjct: 421 ------TAHAYTCDLTDSAAVDHTVKDILAEHGHVDYLVNNAG 457
|
Length = 657 |
| >gnl|CDD|181298 PRK08219, PRK08219, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 2e-09
Identities = 52/211 (24%), Positives = 90/211 (42%), Gaps = 39/211 (18%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ITG++RG+G A+ARE L +++ R +E + EL
Sbjct: 4 PTALITGASRGIGAAIARE-LAPTHTLLLGGRPAERLDELAAELPG-------------- 48
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAG-TNKGFKPLLQFTNEEI 296
D+ +P + AV + G +D+ ++NAG + G P+ + T +E
Sbjct: 49 -------ATPFPVDLTDPEAIAA----AVEQLGRLDVLVHNAGVADLG--PVAESTVDEW 95
Query: 297 EQIVSTNLVGSILCTRE---AMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGL 353
+ N+V TR A+R GH+ ++ +G+G + P Y ++K L
Sbjct: 96 RATLEVNVVAPAELTRLLLPALRAAH-----GHVVFIN-SGAGLRANPGWGSYAASKFAL 149
Query: 354 RQLQASLFKESKRSKVGVHTASPGMVLTDLL 384
R L +L +E + V V + PG TD+
Sbjct: 150 RALADAL-REEEPGNVRVTSVHPGRTDTDMQ 179
|
Length = 227 |
| >gnl|CDD|187612 cd05354, SDR_c7, classical (c) SDR, subgroup 7 | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 2e-09
Identities = 49/205 (23%), Positives = 79/205 (38%), Gaps = 27/205 (13%)
Query: 180 VVITGSTRGLGKALAREFLLSG-DRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKK 238
V++TG+ RG+GKA L G +V A R S L K
Sbjct: 6 VLVTGANRGIGKAFVESLLAHGAKKVYAAVRDPGS----AAHLVA--------------K 47
Query: 239 NLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQ 298
KV + DV +P ++ + A + +D+ INNAG K L + E ++Q
Sbjct: 48 YG--DKVVPLRLDVTDPESIKAAAAQAKD----VDVVINNAGVLKPATLLEEGALEALKQ 101
Query: 299 IVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQA 358
+ N+ G + + V++ G I N++ S + P Y ++K L
Sbjct: 102 EMDVNVFGLLRLAQAFAPVLKANGGGA-IVNLNSVAS-LKNFPAMGTYSASKSAAYSLTQ 159
Query: 359 SLFKESKRSKVGVHTASPGMVLTDL 383
L E V + PG + T +
Sbjct: 160 GLRAELAAQGTLVLSVHPGPIDTRM 184
|
These proteins are members of the classical SDR family, with a canonical active site triad (and also an active site Asn) and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 235 |
| >gnl|CDD|235739 PRK06200, PRK06200, 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 2e-09
Identities = 43/171 (25%), Positives = 69/171 (40%), Gaps = 27/171 (15%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
+ITG G+G+AL FL G RV V RS+E + ++
Sbjct: 9 ALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASLRQRFGDH--------------- 53
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQ- 298
V + DV AD Q+ + V+ FG +D ++ NAG L+ E ++
Sbjct: 54 -----VLVVEGDVTSYADNQRAVDQTVDAFGKLDCFVGNAGIWDYNTSLVDIPAETLDTA 108
Query: 299 ---IVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAG--SGGSSTPLTA 344
I + N+ G +L + A+ ++ G IF + + GG TA
Sbjct: 109 FDEIFNVNVKGYLLGAKAALPALK-ASGGSMIFTLSNSSFYPGGGGPLYTA 158
|
Length = 263 |
| >gnl|CDD|183716 PRK12744, PRK12744, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 3e-09
Identities = 51/199 (25%), Positives = 82/199 (41%), Gaps = 20/199 (10%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
V+I G + LG +AR+ G + V +S + + E +K AAG
Sbjct: 11 VLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVK----AAG------ 60
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGF-KPLLQFTNEEIEQ 298
AK D+ A V+KL + A FG DI IN G K KP+++ + E ++
Sbjct: 61 ---AKAVAFQADLTTAAAVEKLFDDAKAAFGRPDIAINTVG--KVLKKPIVEISEAEYDE 115
Query: 299 IVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQA 358
+ + N + +EA R + D G I + + G+ TP + Y +K +
Sbjct: 116 MFAVNSKSAFFFIKEAGRHLND---NGKIVTLVTS-LLGAFTPFYSAYAGSKAPVEHFTR 171
Query: 359 SLFKESKRSKVGVHTASPG 377
+ KE + V PG
Sbjct: 172 AASKEFGARGISVTAVGPG 190
|
Length = 257 |
| >gnl|CDD|187606 cd05348, BphB-like_SDR_c, cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase (BphB)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 3e-09
Identities = 59/222 (26%), Positives = 93/222 (41%), Gaps = 34/222 (15%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
+ITG GLG+AL F+ G +V V RS+E V EL + +
Sbjct: 7 ALITGGGSGLGRALVERFVAEGAKVAVLDRSAEK----VAELRADFGD------------ 50
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEI--- 296
V G+ DV AD ++ V FG +D +I NAG L+ E++
Sbjct: 51 ----AVVGVEGDVRSLADNERAVARCVERFGKLDCFIGNAGIWDYSTSLVDIPEEKLDEA 106
Query: 297 -EQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAG---SGGSSTPLTAVYGSTKCG 352
+++ N+ G IL + A+ + +G IF + AG GG +Y ++K
Sbjct: 107 FDELFHINVKGYILGAKAALPALY-ATEGSVIFTVSNAGFYPGGGGP-----LYTASKHA 160
Query: 353 LRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQ 394
+ L L E + V+ +PG ++TDL S Q +
Sbjct: 161 VVGLVKQLAYELA-PHIRVNGVAPGGMVTDLRGPASLGQGET 201
|
cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase (BphB) is a classical SDR, it is of particular importance for its role in the degradation of biphenyl/polychlorinated biphenyls(PCBs); PCBs are a significant source of environmental contamination. This subgroup also includes Pseudomonas putida F1 cis-biphenyl-1,2-dihydrodiol-1,2-dehydrogenase (aka cis-benzene glycol dehydrogenase, encoded by the bnzE gene), which participates in benzene metabolism. In addition it includes Pseudomonas sp. C18 putative 1,2-dihydroxy-1,2-dihydronaphthalene dehydrogenase (aka dibenzothiophene dihydrodiol dehydrogenase, encoded by the doxE gene) which participates in an upper naphthalene catabolic pathway. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 257 |
| >gnl|CDD|187599 cd05340, Ycik_SDR_c, Escherichia coli K-12 YCIK-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 57.2 bits (138), Expect = 3e-09
Identities = 37/206 (17%), Positives = 78/206 (37%), Gaps = 20/206 (9%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
R +++TG++ G+G+ A + G V++ R+ E +R + E
Sbjct: 5 RIILVTGASDGIGREAALTYARYGATVILLGRNEEKLRQVADHINE-------------- 50
Query: 238 KNLVHAKVAGIACDV--CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEE 295
+ D+ C + Q+L+ + +D ++NAG PL + +
Sbjct: 51 --EGGRQPQWFILDLLTCTSENCQQLAQRIAVNYPRLDGVLHNAGLLGDVCPLSEQNPQV 108
Query: 296 IEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQ 355
+ + N+ + + T+ + ++ G +F G G + Y +K
Sbjct: 109 WQDVXQVNVNATFMLTQALLPLLLKSDAGSLVFTSSSVGRQGRAN--WGAYAVSKFATEG 166
Query: 356 LQASLFKESKRSKVGVHTASPGMVLT 381
L L E ++ + V+ +PG T
Sbjct: 167 LXQVLADEYQQRNLRVNCINPGGTRT 192
|
Escherichia coli K-12 YCIK and related proteins have a canonical classical SDR nucleotide-binding motif and active site tetrad. They are predicted oxoacyl-(acyl carrier protein/ACP) reductases. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 236 |
| >gnl|CDD|181120 PRK07792, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 3e-09
Identities = 54/187 (28%), Positives = 86/187 (45%), Gaps = 23/187 (12%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ V+TG+ GLG+A A G VVV +S + + L E + AAG
Sbjct: 13 KVAVVTGAAAGLGRAEALGLARLGATVVVNDVASA------LDASDVLDE-IRAAGA--- 62
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
K +A D+ + A +L AV G +DI +NNAG + + L ++EE +
Sbjct: 63 ------KAVAVAGDISQRATADELVATAV-GLGGLDIVVNNAGITRD-RMLFNMSDEEWD 114
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPK--GGHIFN--MDGAGSGGSSTPL-TAVYGSTKCG 352
+++ +L G L TR A R + K GG ++ ++ + G P+ A YG+ K G
Sbjct: 115 AVIAVHLRGHFLLTRNAAAYWRAKAKAAGGPVYGRIVNTSSEAGLVGPVGQANYGAAKAG 174
Query: 353 LRQLQAS 359
+ L S
Sbjct: 175 ITALTLS 181
|
Length = 306 |
| >gnl|CDD|236190 PRK08220, PRK08220, 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 4e-09
Identities = 48/209 (22%), Positives = 83/209 (39%), Gaps = 33/209 (15%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ V +TG+ +G+G A+A F+ +G +V+ ++ L +
Sbjct: 9 KTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQA---------FLTQE------------- 46
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
A DV + A V ++ + E G +D+ +N AG + ++E+ +
Sbjct: 47 ----DYPFATFVLDVSDAAAVAQVCQRLLAETGPLDVLVNAAGILR-MGATDSLSDEDWQ 101
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLT--AVYGSTKCGLRQ 355
Q + N G+ R M R Q + G I + GS + P A YG++K L
Sbjct: 102 QTFAVNAGGAFNLFRAVMPQFRRQ-RSGAIVTV---GSNAAHVPRIGMAAYGASKAALTS 157
Query: 356 LQASLFKESKRSKVGVHTASPGMVLTDLL 384
L + E V + SPG TD+
Sbjct: 158 LAKCVGLELAPYGVRCNVVSPGSTDTDMQ 186
|
Length = 252 |
| >gnl|CDD|236209 PRK08265, PRK08265, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 5e-09
Identities = 43/199 (21%), Positives = 80/199 (40%), Gaps = 29/199 (14%)
Query: 181 VITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNL 240
++TG +G A+AR + +G RV + A G++
Sbjct: 10 IVTGGATLIGAAVARALVAAGARVAIVDID--------------------ADNGAAVAAS 49
Query: 241 VHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGT--NKGFKPLLQFTNEEIEQ 298
+ + IA D+ + A +++ V FG +DI +N A T + G + +
Sbjct: 50 LGERARFIATDITDDAAIERAVATVVARFGRVDILVNLACTYLDDGLAS----SRADWLA 105
Query: 299 IVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQA 358
+ NLV + + + A + GG I N + S + +Y ++K +RQL
Sbjct: 106 ALDVNLVSAAMLAQAAHPHLARG--GGAIVNF-TSISAKFAQTGRWLYPASKAAIRQLTR 162
Query: 359 SLFKESKRSKVGVHTASPG 377
S+ + + V++ SPG
Sbjct: 163 SMAMDLAPDGIRVNSVSPG 181
|
Length = 261 |
| >gnl|CDD|235725 PRK06179, PRK06179, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 5e-09
Identities = 43/177 (24%), Positives = 71/177 (40%), Gaps = 40/177 (22%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
++TG++ G+G+A A + +G RV SR+ A +
Sbjct: 7 ALVTGASSGIGRATAEKLARAGYRVFGTSRN--------------------PARAAPI-- 44
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLL----QFTNEE 295
V + DV + A VQ + + G ID+ +NNAG L + + +
Sbjct: 45 ---PGVELLELDVTDDASVQAAVDEVIARAGRIDVLVNNAGVG-----LAGAAEESSIAQ 96
Query: 296 IEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGS--GGSSTPLTAVYGSTK 350
+ + TN+ G + TR + MR Q G I N+ S G P A+Y ++K
Sbjct: 97 AQALFDTNVFGILRMTRAVLPHMRAQ-GSGRIINI---SSVLGFLPAPYMALYAASK 149
|
Length = 270 |
| >gnl|CDD|187662 cd09761, A3DFK9-like_SDR_c, Clostridium thermocellum A3DFK9-like, a putative carbohydrate or polyalcohol metabolizing SDR, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 5e-09
Identities = 50/205 (24%), Positives = 79/205 (38%), Gaps = 27/205 (13%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSE-SVRMTVTELEENLKEGMMAAGGSS 236
+ ++TG G+GK + +FL +GD+VV A E E A +
Sbjct: 2 KVAIVTGGGHGIGKQICLDFLEAGDKVVFADIDEERGADFAEAEGPNLFFVHGDVADETL 61
Query: 237 KKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEI 296
K +V+A + + G ID+ +NNA L EE
Sbjct: 62 VKFVVYA---------------------MLEKLGRIDVLVNNAARGSK-GILSSLLLEEW 99
Query: 297 EQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQL 356
++I+S NL G +R + G I N+ + S P + Y ++K GL L
Sbjct: 100 DRILSVNLTGPYELSRYCRDELIKN--KGRIINI-ASTRAFQSEPDSEAYAASKGGLVAL 156
Query: 357 QASLFKESKRSKVGVHTASPGMVLT 381
+L S + V+ SPG + T
Sbjct: 157 THAL-AMSLGPDIRVNCISPGWINT 180
|
This subgroup includes a putative carbohydrate or polyalcohol metabolizing SDR (A3DFK9) from Clostridium thermocellum. Its members have a TGXXXGXG classical-SDR glycine-rich NAD-binding motif, and some have a canonical SDR active site tetrad (A3DFK9 lacks the upstream Asn). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 242 |
| >gnl|CDD|181517 PRK08642, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 6e-09
Identities = 43/157 (27%), Positives = 67/157 (42%), Gaps = 26/157 (16%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
V++TG +RGLG A+AR F G RVVV SE L + L + +A
Sbjct: 8 VLVTGGSRGLGAAIARAFAREGARVVVNYHQSED---AAEALADELGDRAIA-------- 56
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGS-IDIWINNAGTNKGFKPLLQFTNEEIE- 297
+ DV + VQ + A FG I +NNA + F + ++I
Sbjct: 57 --------LQADVTDREQVQAMFATATEHFGKPITTVVNNALADFSFDGDARKKADDITW 108
Query: 298 ----QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNM 330
Q + ++ G++ + A+ MR+Q G I N+
Sbjct: 109 EDFQQQLEGSVKGALNTIQAALPGMREQ-GFGRIINI 144
|
Length = 253 |
| >gnl|CDD|236399 PRK09186, PRK09186, flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 1e-08
Identities = 48/219 (21%), Positives = 94/219 (42%), Gaps = 41/219 (18%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
++ITG+ +G AL + L +G V+ A E++ + L + K
Sbjct: 7 ILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFK------------- 53
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNA-GTNKGF-KPLLQFTNEEIE 297
K++ + D+ + +++ + + ++G ID +N A NK + K + ++
Sbjct: 54 --SKKLSLVELDITDQESLEEFLSKSAEKYGKIDGAVNCAYPRNKDYGKKFFDVSLDDFN 111
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSS--------------TPLT 343
+ +S +L S L +++ + + Q GG++ N+ SS T +T
Sbjct: 112 ENLSLHLGSSFLFSQQFAKYFKKQ-GGGNLVNI-------SSIYGVVAPKFEIYEGTSMT 163
Query: 344 AV--YGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVL 380
+ Y + K G+ L L K K S + V+ SPG +L
Sbjct: 164 SPVEYAAIKAGIIHLTKYLAKYFKDSNIRVNCVSPGGIL 202
|
Length = 256 |
| >gnl|CDD|236099 PRK07791, PRK07791, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 1e-08
Identities = 55/207 (26%), Positives = 85/207 (41%), Gaps = 21/207 (10%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVAS-RSSESVRMTVTELEENLKEGMMAAGGSS 236
R V++TG+ G+G+A A F G RVVV + + + + ++AAGG +
Sbjct: 7 RVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEA 66
Query: 237 KKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAG-TNKGFKPLLQFTNEE 295
N D+ + L + AV FG +D+ +NNAG + + EE
Sbjct: 67 VAN---------GDDIADWDGAANLVDAAVETFGGLDVLVNNAGILRDRM--IANMSEEE 115
Query: 296 IEQIVSTNLVGSILCTREAMRVMRDQPKGGH-----IFNM-DGAGSGGSSTPLTAVYGST 349
+ +++ +L G R A R + K G I N GAG GS Y +
Sbjct: 116 WDAVIAVHLKGHFATLRHAAAYWRAESKAGRAVDARIINTSSGAGLQGS--VGQGNYSAA 173
Query: 350 KCGLRQLQASLFKESKRSKVGVHTASP 376
K G+ L E R V V+ +P
Sbjct: 174 KAGIAALTLVAAAELGRYGVTVNAIAP 200
|
Length = 286 |
| >gnl|CDD|183797 PRK12859, PRK12859, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 1e-08
Identities = 51/204 (25%), Positives = 88/204 (43%), Gaps = 21/204 (10%)
Query: 181 VITGSTR--GLGKALAREFLLSGDRVVVASRSSESVRMTV-TELEEN--LKEGMMAAGGS 235
V+TG +R G+G A+ +E +G + ++ M + +E L+E ++ G
Sbjct: 10 VVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNG-- 67
Query: 236 SKKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNA--GTNKGFKPLLQFTN 293
KV+ + D+ + ++L N + G I +NNA TN F L T
Sbjct: 68 -------VKVSSMELDLTQNDAPKELLNKVTEQLGYPHILVNNAAYSTNNDFSNL---TA 117
Query: 294 EEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGL 353
EE+++ N+ + L + + R D+ GG I NM +G Y +TK +
Sbjct: 118 EELDKHYMVNVRATTLLSSQFAR-GFDKKSGGRIINMT-SGQFQGPMVGELAYAATKGAI 175
Query: 354 RQLQASLFKESKRSKVGVHTASPG 377
L +SL E + V+ +PG
Sbjct: 176 DALTSSLAAEVAHLGITVNAINPG 199
|
Length = 256 |
| >gnl|CDD|235816 PRK06500, PRK06500, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 1e-08
Identities = 52/205 (25%), Positives = 82/205 (40%), Gaps = 25/205 (12%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
+ITG T G+G AR+FL G RV + R S+ EL E+
Sbjct: 9 ALITGGTSGIGLETARQFLAEGARVAITGRDPASLEAARAELGES--------------- 53
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQI 299
I D + A + L+ FG +D NAG K F PL + ++
Sbjct: 54 -----ALVIRADAGDVAAQKALAQALAEAFGRLDAVFINAGVAK-FAPLEDWDEAMFDRS 107
Query: 300 VSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQAS 359
+TN+ G + + ++ I ++G+ + P ++VY ++K L L +
Sbjct: 108 FNTNVKGPYFLIQALLPLLA---NPASIV-LNGSINAHIGMPNSSVYAASKAALLSLAKT 163
Query: 360 LFKESKRSKVGVHTASPGMVLTDLL 384
L E + V+ SPG V T L
Sbjct: 164 LSGELLPRGIRVNAVSPGPVQTPLY 188
|
Length = 249 |
| >gnl|CDD|236056 PRK07576, PRK07576, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 2e-08
Identities = 51/201 (25%), Positives = 86/201 (42%), Gaps = 23/201 (11%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+NVV+ G T G+ +A+ F +G V VASRS E V V +L++
Sbjct: 10 KNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQ-------------- 55
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGF-KPLLQFTNEEI 296
+ G++ DV + A V+ +EFG ID+ ++ A N F P +
Sbjct: 56 ---AGPEGLGVSADVRDYAAVEAAFAQIADEFGPIDVLVSGAAGN--FPAPAAGMSANGF 110
Query: 297 EQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQL 356
+ +V +L+G+ + A ++R G I + A P+ A + K G+ L
Sbjct: 111 KTVVDIDLLGTFNVLKAAYPLLRRP--GASIIQIS-APQAFVPMPMQAHVCAAKAGVDML 167
Query: 357 QASLFKESKRSKVGVHTASPG 377
+L E + V++ PG
Sbjct: 168 TRTLALEWGPEGIRVNSIVPG 188
|
Length = 264 |
| >gnl|CDD|171820 PRK12936, PRK12936, 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 3e-08
Identities = 54/227 (23%), Positives = 97/227 (42%), Gaps = 28/227 (12%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
R ++TG++ G+G+ +AR G V + E + EL E +K + A S +
Sbjct: 7 RKALVTGASGGIGEEIARLLHAQGAIVGLHGTRVEKLEALAAELGERVK--IFPANLSDR 64
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAG-TNKGFKPLLQFTNEEI 296
+V+ L A + +DI +NNAG T G ++ ++E+
Sbjct: 65 ------------------DEVKALGQKAEADLEGVDILVNNAGITKDGL--FVRMSDEDW 104
Query: 297 EQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQL 356
+ ++ NL + TRE M + + G I N+ G + P A Y ++K G+
Sbjct: 105 DSVLEVNLTATFRLTRELTHPMMRR-RYGRIINITSV-VGVTGNPGQANYCASKAGMIGF 162
Query: 357 QASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELP 403
SL +E V V+ +PG + + + + +KQ I+ +P
Sbjct: 163 SKSLAQEIATRNVTVNCVAPGFIESAMT---GKLNDKQKEAIMGAIP 206
|
Length = 245 |
| >gnl|CDD|180448 PRK06182, PRK06182, short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 3e-08
Identities = 55/203 (27%), Positives = 88/203 (43%), Gaps = 26/203 (12%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
++TG++ G+GKA AR G V A+R + +M +L + G
Sbjct: 6 ALVTGASSGIGKATARRLAAQGYTVYGAARRVD--KME--DLA--------SLG------ 47
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQI 299
VH ++ DV + A ++ + + E G ID+ +NNAG + + +E +
Sbjct: 48 -VHP----LSLDVTDEASIKAAVDTIIAEEGRIDVLVNNAGYGS-YGAIEDVPIDEARRQ 101
Query: 300 VSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQAS 359
NL G+ T+ + MR Q + G I N+ G G TPL A Y +TK L +
Sbjct: 102 FEVNLFGAARLTQLVLPHMRAQ-RSGRIINISSMG-GKIYTPLGAWYHATKFALEGFSDA 159
Query: 360 LFKESKRSKVGVHTASPGMVLTD 382
L E + V PG + T+
Sbjct: 160 LRLEVAPFGIDVVVIEPGGIKTE 182
|
Length = 273 |
| >gnl|CDD|187663 cd09762, HSDL2_SDR_c, human hydroxysteroid dehydrogenase-like protein 2 (HSDL2), classical (c) SDRs | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 3e-08
Identities = 43/164 (26%), Positives = 77/164 (46%), Gaps = 34/164 (20%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSE-------SVRMTVTELEENLKEGMM 230
+ + ITG++RG+GKA+A + G VV+A++++E ++ E+E
Sbjct: 4 KTLFITGASRGIGKAIALKAARDGANVVIAAKTAEPHPKLPGTIYTAAEEIE-------- 55
Query: 231 AAGGSSKKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAG----TNKGFK 286
AAGG K D+ + V+ AV +FG IDI +NNA T
Sbjct: 56 AAGG---------KALPCIVDIRDEDQVRAAVEKAVEKFGGIDILVNNASAISLTGTLDT 106
Query: 287 PLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNM 330
P+ ++ + ++ N G+ LC++ + ++ + K HI N+
Sbjct: 107 PMKRY-----DLMMGVNTRGTYLCSKACLPYLK-KSKNPHILNL 144
|
This subgroup includes human HSDL2 and related protens. These are members of the classical SDR family, with a canonical Gly-rich NAD-binding motif and the typical YXXXK active site motif. However, the rest of the catalytic tetrad is not strongly conserved. HSDL2 may play a part in fatty acid metabolism, as it is found in peroxisomes. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 243 |
| >gnl|CDD|212496 cd11730, Tthb094_like_SDR_c, Tthb094 and related proteins, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 4e-08
Identities = 45/209 (21%), Positives = 77/209 (36%), Gaps = 43/209 (20%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
+I G+T G+G+ALAR G R++++ R +
Sbjct: 1 ALILGATGGIGRALARALAGRGWRLLLSGRDA---------------------------- 32
Query: 240 LVHAKVAGIACDVCEPADVQKLSN-----FAVNEFGSIDIWINNAGTNKGFKPLLQFTNE 294
+AG+A +V A ++ E G +D+ + AG G KPL +
Sbjct: 33 ---GALAGLAAEVGALARPADVAAELEVWALAQELGPLDLLVYAAGAILG-KPLARTKPA 88
Query: 295 EIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLR 354
+I+ NL G+ L + A+ ++ G + + GA P + Y + K L
Sbjct: 89 AWRRILDANLTGAALVLKHALALL---AAGARLVFL-GAYPELVMLPGLSAYAAAKAALE 144
Query: 355 QLQASLFKESKRSKVGVHTASPGMVLTDL 383
KE + + + P V T L
Sbjct: 145 AYVEVARKEVR--GLRLTLVRPPAVDTGL 171
|
Tthb094 from Thermus Thermophilus is a classical SDR which binds NADP. Members of this subgroup contain the YXXXK active site characteristic of SDRs. Also, an upstream Asn residue of the canonical catalytic tetrad is partially conserved in this subgroup of proteins of undetermined function. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 206 |
| >gnl|CDD|183718 PRK12746, PRK12746, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (128), Expect = 5e-08
Identities = 64/229 (27%), Positives = 104/229 (45%), Gaps = 46/229 (20%)
Query: 181 VITGSTRGLGKALAREFLLSGDRVVVA---SRSSESVRMTVTELEENLKEGMMAAGGSSK 237
++TG++RG+G+A+A L+ D +VA R+ ++ T+ E+E N GG K
Sbjct: 10 LVTGASRGIGRAIAMR--LANDGALVAIHYGRNKQAADETIREIESN--------GG--K 57
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEF------GSIDIWINNAGTNKGFKPLLQF 291
L+ A + I V+KL NE IDI +NNAG G + ++
Sbjct: 58 AFLIEADLNSI-------DGVKKLVEQLKNELQIRVGTSEIDILVNNAGI--GTQGTIEN 108
Query: 292 TNEEI-EQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA----GSGGSSTPLTAVY 346
T EEI ++I++ N+ ++ + ++R + G + N+ A G GS Y
Sbjct: 109 TTEEIFDEIMAVNIKAPFFLIQQTLPLLRAE---GRVINISSAEVRLGFTGS-----IAY 160
Query: 347 GSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDL---LLSGSTIQN 392
G +K L + L K + V+T PG TD+ LL I+N
Sbjct: 161 GLSKGALNTMTLPLAKHLGERGITVNTIMPGYTKTDINAKLLDDPEIRN 209
|
Length = 254 |
| >gnl|CDD|180818 PRK07062, PRK07062, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 6e-08
Identities = 28/103 (27%), Positives = 41/103 (39%), Gaps = 15/103 (14%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
R V+TG + G+G A L +G V + R E + L E
Sbjct: 9 RVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFP----------- 57
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAG 280
A++ CDV + ADV + FG +D+ +NNAG
Sbjct: 58 ----GARLLAARCDVLDEADVAAFAAAVEARFGGVDMLVNNAG 96
|
Length = 265 |
| >gnl|CDD|180413 PRK06128, PRK06128, oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 7e-08
Identities = 56/217 (25%), Positives = 84/217 (38%), Gaps = 21/217 (9%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVAS-RSSESVRMTVTELEENLKEGMMAAGGSS 236
R +ITG+ G+G+A A F G + + E V +L + A G
Sbjct: 56 RKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQ-------AEG--- 105
Query: 237 KKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEI 296
K + D+ + A ++L AV E G +DI +N AG K + T E+
Sbjct: 106 ------RKAVALPGDLKDEAFCRQLVERAVKELGGLDILVNIAGKQTAVKDIADITTEQF 159
Query: 297 EQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQL 356
+ TN+ + A+ + P G I N S S L Y STK +
Sbjct: 160 DATFKTNVYAMFWLCKAAIPHL---PPGASIINTGSIQSYQPSPTLLD-YASTKAAIVAF 215
Query: 357 QASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNK 393
+L K+ + V+ +PG V T L SG K
Sbjct: 216 TKALAKQVAEKGIRVNAVAPGPVWTPLQPSGGQPPEK 252
|
Length = 300 |
| >gnl|CDD|181126 PRK07806, PRK07806, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 1e-07
Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 16/102 (15%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ ++TGS+RG+G A+ +G VVV R + + AAGG
Sbjct: 7 KTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKA-------PRANKVVAEIEAAGG--- 56
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNA 279
+ + + D+ + V L + A EFG +D + NA
Sbjct: 57 ------RASAVGADLTDEESVAALMDTAREEFGGLDALVLNA 92
|
Length = 248 |
| >gnl|CDD|169390 PRK08340, PRK08340, glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 1e-07
Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 18/102 (17%)
Query: 179 NVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKK 238
NV++T S+RG+G +ARE L G RVV++SR+ E++ + EL+E
Sbjct: 2 NVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKELKE--------------- 46
Query: 239 NLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAG 280
+ +V + D+ + D++ L A G ID + NAG
Sbjct: 47 ---YGEVYAVKADLSDKDDLKNLVKEAWELLGGIDALVWNAG 85
|
Length = 259 |
| >gnl|CDD|181668 PRK09135, PRK09135, pteridine reductase; Provisional | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 1e-07
Identities = 49/219 (22%), Positives = 80/219 (36%), Gaps = 56/219 (25%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSES-VRMTVTELEENLKEGMMAAGGSSKK 238
+ITG R +G A+AR +G RV + S + EL
Sbjct: 9 ALITGGARRIGAAIARTLHAAGYRVAIHYHRSAAEADALAAEL----------------- 51
Query: 239 NLVHA-KVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKP--LLQFTNEE 295
N + A + D+ +P + +L V FG +D +NNA + F P L T +
Sbjct: 52 NALRPGSAAALQADLLDPDALPELVAACVAAFGRLDALVNNASS---FYPTPLGSITEAQ 108
Query: 296 IEQIVSTNLVGSILCTREAMRVMR--------------DQPKGGHIFNMDGAGSGGSSTP 341
+ + ++NL ++ A +R ++P G+
Sbjct: 109 WDDLFASNLKAPFFLSQAAAPQLRKQRGAIVNITDIHAERPLKGYP-------------- 154
Query: 342 LTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVL 380
VY + K L L SL E +V V+ +PG +L
Sbjct: 155 ---VYCAAKAALEMLTRSLALELA-PEVRVNAVAPGAIL 189
|
Length = 249 |
| >gnl|CDD|180300 PRK05875, PRK05875, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 1e-07
Identities = 47/218 (21%), Positives = 89/218 (40%), Gaps = 39/218 (17%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
R ++TG G+GK +A + +G V++ R+ + + E+E + G+
Sbjct: 8 RTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEA------LKGAGA-- 59
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
V + A DV + V + + A G + ++ AG ++ P+ Q ++
Sbjct: 60 ---VRYEPA----DVTDEDQVARAVDAATAWHGRLHGVVHCAGGSETIGPITQIDSDAWR 112
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAV-----------Y 346
+ V N+ G++ + A R + G GGS ++++ Y
Sbjct: 113 RTVDLNVNGTMYVLKHAARELV-------------RGGGGSFVGISSIAASNTHRWFGAY 159
Query: 347 GSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLL 384
G TK + L E S V V++ PG++ TDL+
Sbjct: 160 GVTKSAVDHLMKLAADELGPSWVRVNSIRPGLIRTDLV 197
|
Length = 276 |
| >gnl|CDD|236040 PRK07523, PRK07523, gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 1e-07
Identities = 48/207 (23%), Positives = 80/207 (38%), Gaps = 22/207 (10%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
R ++TGS++G+G ALA +G V++ R + L+ A +
Sbjct: 11 RRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTD 70
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFK-PLLQFTNEEI 296
+ V A + E G IDI +NNAG F+ PL F +
Sbjct: 71 HDAVRAAIDAFEA-----------------EIGPIDILVNNAGMQ--FRTPLEDFPADAF 111
Query: 297 EQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQL 356
E+++ TN+ + R M + G I N+ S + P A Y +TK + L
Sbjct: 112 ERLLRTNISSVFYVGQAVARHMIAR-GAGKIINIASVQS-ALARPGIAPYTATKGAVGNL 169
Query: 357 QASLFKESKRSKVGVHTASPGMVLTDL 383
+ + + + + +PG T L
Sbjct: 170 TKGMATDWAKHGLQCNAIAPGYFDTPL 196
|
Length = 255 |
| >gnl|CDD|180408 PRK06114, PRK06114, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 1e-07
Identities = 51/202 (25%), Positives = 83/202 (41%), Gaps = 21/202 (10%)
Query: 182 ITGSTRGLGKALAREFLLSGDRVV-VASRSSESVRMTVTELEENLKEGMMAAGGSSKKNL 240
+TG+ G+G+ +A +G V R+ + + T +E AAG +
Sbjct: 13 VTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIE--------AAGRRA---- 60
Query: 241 VHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIV 300
IA DV AD++ E G++ + +N AG P + E+ + ++
Sbjct: 61 -----IQIAADVTSKADLRAAVARTEAELGALTLAVNAAGI-ANANPAEEMEEEQWQTVM 114
Query: 301 STNLVGSIL-CTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQAS 359
NL G L C EA R M + G + +G + L A Y ++K G+ L S
Sbjct: 115 DINLTGVFLSCQAEA-RAMLENGGGSIVNIASMSGIIVNRGLLQAHYNASKAGVIHLSKS 173
Query: 360 LFKESKRSKVGVHTASPGMVLT 381
L E + V++ SPG T
Sbjct: 174 LAMEWVGRGIRVNSISPGYTAT 195
|
Length = 254 |
| >gnl|CDD|187626 cd05368, DHRS6_like_SDR_c, human DHRS6-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 2e-07
Identities = 50/208 (24%), Positives = 81/208 (38%), Gaps = 34/208 (16%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
+IT + +G+G+A+A F G V+ + EE LKE + G
Sbjct: 5 ALITAAAQGIGRAIALAFAREGANVIATDIN-----------EEKLKE--LERGPG---- 47
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKP---LLQFTNEEI 296
+ +V DV + V L E G ID+ N AG F +L +++
Sbjct: 48 -ITTRVL----DVTDKEQVAAL----AKEEGRIDVLFNCAG----FVHHGSILDCEDDDW 94
Query: 297 EQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQL 356
+ ++ N+ L + + M + K G I NM S P VY +TK + L
Sbjct: 95 DFAMNLNVRSMYLMIKAVLPKMLAR-KDGSIINMSSVASSIKGVPNRFVYSTTKAAVIGL 153
Query: 357 QASLFKESKRSKVGVHTASPGMVLTDLL 384
S+ + + + + PG V T L
Sbjct: 154 TKSVAADFAQQGIRCNAICPGTVDTPSL 181
|
Human DHRS6, and similar proteins. These proteins are classical SDRs, with a canonical active site tetrad and a close match to the typical Gly-rich NAD-binding motif. Human DHRS6 is a cytosolic type 2 (R)-hydroxybutyrate dehydrogenase, which catalyses the conversion of (R)-hydroxybutyrate to acetoacetate. Also included in this subgroup is Escherichia coli UcpA (upstream cys P). Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Note: removed : needed to make this chiodl smaller when drew final trees: rmeoved text form description: Other proteins in this subgroup include Thermoplasma acidophilum aldohexose dehydrogenase, which has high dehydrogenase activity against D-mannose, Bacillus subtilis BacC involved in the biosynthesis of the dipeptide bacilysin and its antibiotic moiety anticapsin, Sphingomonas paucimobilis strain B90 LinC, involved in the degradation of hexachlorocyclohexane isomers...... P). Length = 241 |
| >gnl|CDD|235910 PRK07024, PRK07024, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 2e-07
Identities = 50/210 (23%), Positives = 89/210 (42%), Gaps = 30/210 (14%)
Query: 177 PRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSS 236
P V ITG++ G+G+ALARE+ G + + +R +++++ L +
Sbjct: 2 PLKVFITGASSGIGQALAREYARQGATLGLVARRTDALQAFAARLPK------------- 48
Query: 237 KKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEI 296
A+V+ A DV + + + + G D+ I NAG + G L E++
Sbjct: 49 -----AARVSVYAADVRDADALAAAAADFIAAHGLPDVVIANAGISVG---TLTEEREDL 100
Query: 297 E---QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGS--GGSSTPLTAVYGSTKC 351
+++ TN G + + + MR +G + G S G P Y ++K
Sbjct: 101 AVFREVMDTNYFGMVATFQPFIAPMRAARRG----TLVGIASVAGVRGLPGAGAYSASKA 156
Query: 352 GLRQLQASLFKESKRSKVGVHTASPGMVLT 381
+ SL E + + V V T +PG + T
Sbjct: 157 AAIKYLESLRVELRPAGVRVVTIAPGYIRT 186
|
Length = 257 |
| >gnl|CDD|188169 TIGR01829, AcAcCoA_reduct, acetoacetyl-CoA reductase | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 2e-07
Identities = 51/211 (24%), Positives = 82/211 (38%), Gaps = 31/211 (14%)
Query: 182 ITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLV 241
+TG G+G A+ + G RV +E E E + A G
Sbjct: 5 VTGGMGGIGTAICQRLAKDGYRVAANCGPNE-------ERAEAWLQEQGALG-------- 49
Query: 242 HAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGT--NKGFKPLLQFTNEEIEQI 299
+ DV + E G ID+ +NNAG + FK + T E+ +
Sbjct: 50 -FDFRVVEGDVSSFESCKAAVAKVEAELGPIDVLVNNAGITRDATFK---KMTYEQWSAV 105
Query: 300 VSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA----GSGGSSTPLTAVYGSTKCGLRQ 355
+ TNL T+ + MR++ G I N+ G G + Y + K G+
Sbjct: 106 IDTNLNSVFNVTQPVIDGMRER-GWGRIINISSVNGQKGQFGQTN-----YSAAKAGMIG 159
Query: 356 LQASLFKESKRSKVGVHTASPGMVLTDLLLS 386
+L +E V V+T SPG + TD++++
Sbjct: 160 FTKALAQEGATKGVTVNTISPGYIATDMVMA 190
|
This model represent acetoacetyl-CoA reductase, a member of the family short-chain-alcohol dehydrogenases. Note that, despite the precision implied by the enzyme name, the reaction of EC 1.1.1.36 is defined more generally as (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families. Length = 242 |
| >gnl|CDD|166421 PLN02780, PLN02780, ketoreductase/ oxidoreductase | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 3e-07
Identities = 52/210 (24%), Positives = 93/210 (44%), Gaps = 28/210 (13%)
Query: 181 VITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNL 240
++TG T G+GK A + G +V+ +R+ + ++ ++ SK +
Sbjct: 57 LVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQ-------------SKYSK 103
Query: 241 VHAK--VAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEE-IE 297
K V + D+ E V+++ E + + INN G + + +EE ++
Sbjct: 104 TQIKTVVVDFSGDIDE--GVKRIKETI--EGLDVGVLINNVGVSYPYARFFHEVDEELLK 159
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGS----STPLTAVYGSTKCGL 353
++ N+ G+ T+ + M + KG I N+ GSG + S PL AVY +TK +
Sbjct: 160 NLIKVNVEGTTKVTQAVLPGMLKRKKGA-IINI---GSGAAIVIPSDPLYAVYAATKAYI 215
Query: 354 RQLQASLFKESKRSKVGVHTASPGMVLTDL 383
Q L+ E K+S + V P V T +
Sbjct: 216 DQFSRCLYVEYKKSGIDVQCQVPLYVATKM 245
|
Length = 320 |
| >gnl|CDD|180796 PRK07023, PRK07023, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 4e-07
Identities = 49/210 (23%), Positives = 86/210 (40%), Gaps = 35/210 (16%)
Query: 181 VITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNL 240
++TG +RGLG ALA + L G V+ +RS + AA G
Sbjct: 5 IVTGHSRGLGAALAEQLLQPGIAVLGVARSRHP--------------SLAAAAG------ 44
Query: 241 VHAKVAGIACDVCEPADV-QKLSNFAVNEFG---SIDIWINNAGTNKGFKPLLQFTNEEI 296
++A + D+ + A L+ + F S + INNAGT + PL I
Sbjct: 45 --ERLAEVELDLSDAAAAAAWLAGDLLAAFVDGASRVLLINNAGTVEPIGPLATLDAAAI 102
Query: 297 EQIVSTNLVGSILCT-REAMRVMRDQPKGGHIFNMDGAGSGGSSTPLT--AVYGSTKCGL 353
+ V N+ ++ T A + I ++ SG + +VY +TK L
Sbjct: 103 ARAVGLNVAAPLMLTAALAQAASDAAER--RILHIS---SGAARNAYAGWSVYCATKAAL 157
Query: 354 RQLQASLFKESKRSKVGVHTASPGMVLTDL 383
++ ++ R+ + + + +PG+V T +
Sbjct: 158 DHHARAVALDANRA-LRIVSLAPGVVDTGM 186
|
Length = 243 |
| >gnl|CDD|235853 PRK06701, PRK06701, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 5e-07
Identities = 53/217 (24%), Positives = 84/217 (38%), Gaps = 46/217 (21%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVA----SRSSESVRMTVTELEENLKEGMMAAGGS 235
+ITG G+G+A+A F G + + + + V KEG
Sbjct: 49 ALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVE------KEG------- 95
Query: 236 SKKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEE 295
K L+ I DV + A + V E G +DI +NNA + L T E+
Sbjct: 96 -VKCLL------IPGDVSDEAFCKDAVEETVRELGRLDILVNNAAFQYPQQSLEDITAEQ 148
Query: 296 IEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAV-----YGSTK 350
+++ TN+ T+ A+ ++ +G I N GS T Y +TK
Sbjct: 149 LDKTFKTNIYSYFHMTKAALPHLK---QGSAIINT------GSITGYEGNETLIDYSATK 199
Query: 351 CGL----RQLQASLFKESKRSKVGVHTASPGMVLTDL 383
+ R L SL ++ R V+ +PG + T L
Sbjct: 200 GAIHAFTRSLAQSLVQKGIR----VNAVAPGPIWTPL 232
|
Length = 290 |
| >gnl|CDD|171531 PRK12481, PRK12481, 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 9e-07
Identities = 52/207 (25%), Positives = 86/207 (41%), Gaps = 31/207 (14%)
Query: 181 VITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNL 240
+ITG GLG+ +A +G +V G+ A +
Sbjct: 12 IITGCNTGLGQGMAIGLAKAGADIV----------------------GVGVAEAPETQAQ 49
Query: 241 VHA---KVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
V A K I D+ + D+ + + AV G IDI INNAG + + LL+F N++ +
Sbjct: 50 VEALGRKFHFITADLIQQKDIDSIVSQAVEVMGHIDILINNAGIIRR-QDLLEFGNKDWD 108
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGS--GGSSTPLTAVYGSTKCGLRQ 355
+++ N ++ + Q GG I N+ S GG P Y ++K +
Sbjct: 109 DVININQKTVFFLSQAVAKQFVKQGNGGKIINIASMLSFQGGIRVP---SYTASKSAVMG 165
Query: 356 LQASLFKESKRSKVGVHTASPGMVLTD 382
L +L E + + V+ +PG + TD
Sbjct: 166 LTRALATELSQYNINVNAIAPGYMATD 192
|
Length = 251 |
| >gnl|CDD|187665 cd09805, type2_17beta_HSD-like_SDR_c, human 17beta-hydroxysteroid dehydrogenase type 2 (type 2 17beta-HSD)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 1e-06
Identities = 48/240 (20%), Positives = 85/240 (35%), Gaps = 46/240 (19%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVAS-----------RSSESVRMTVTELEENLKEG 228
V+ITG G G LA++ G V+ R S R+ +L
Sbjct: 3 VLITGCDSGFGNLLAKKLDSLGFTVLAGCLTKNGPGAKELRRVCSDRLRTLQL------- 55
Query: 229 MMAAGGSSKKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIW--INNAGTNKGFK 286
DV +P +++ + + G +W +NNAG
Sbjct: 56 ----------------------DVTKPEQIKRAAQWVKEHVGEKGLWGLVNNAGILGFGG 93
Query: 287 PLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVY 346
++ + + NL G++ T+ + ++R + KG + N+ + G P Y
Sbjct: 94 DEELLPMDDYRKCMEVNLFGTVEVTKAFLPLLR-RAKG-RVVNV-SSMGGRVPFPAGGAY 150
Query: 347 GSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETV 406
++K + SL +E + V V PG T + + + KQ + LP V
Sbjct: 151 CASKAAVEAFSDSLRRELQPWGVKVSIIEPGNFKTGITGNSELWE-KQAKKLWERLPPEV 209
|
17beta-hydroxysteroid dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. This classical-SDR subgroup includes the human proteins: type 2 17beta-HSD, type 6 17beta-HSD, type 2 11beta-HSD, dehydrogenase/reductase SDR family member 9, short-chain dehydrogenase/reductase family 9C member 7, 3-hydroxybutyrate dehydrogenase type 1, and retinol dehydrogenase 5. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 281 |
| >gnl|CDD|181113 PRK07775, PRK07775, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 1e-06
Identities = 60/211 (28%), Positives = 91/211 (43%), Gaps = 34/211 (16%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
R ++ G++ G+G A A E +G V + +R V + EE L + + A GG +
Sbjct: 11 RPALVAGASSGIGAATAIELAAAGFPVALGARR-------VEKCEE-LVDKIRADGGEA- 61
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
VA DV +P V+ A G I++ ++ AG + F L + + E+ E
Sbjct: 62 -------VA-FPLDVTDPDSVKSFVAQAEEALGEIEVLVSGAG-DTYFGKLHEISTEQFE 112
Query: 298 QIVSTNLVGSILCTREAMRV---MRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGL- 353
V +LVG+ R A V M ++ +G IF G+ P YG+ K GL
Sbjct: 113 SQVQIHLVGA---NRLATAVLPGMIERRRGDLIFV--GSDVALRQRPHMGAYGAAKAGLE 167
Query: 354 ---RQLQASLFKESKRSKVGVHTASPGMVLT 381
LQ L R+ + VH PG LT
Sbjct: 168 AMVTNLQMELEGTGVRASI-VH---PGPTLT 194
|
Length = 274 |
| >gnl|CDD|237189 PRK12748, PRK12748, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 2e-06
Identities = 44/211 (20%), Positives = 81/211 (38%), Gaps = 19/211 (9%)
Query: 177 PRNVVITGSTR--GLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGG 234
+ ++TG++R G+G A+ R G + S M ++ E ++
Sbjct: 5 KKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDK---EPVLLKEE 61
Query: 235 SSKKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNA--GTNKGFKPLLQFT 292
+ + D+ +P ++ G I INNA T+ + L T
Sbjct: 62 IESYG---VRCEHMEIDLSQPYAPNRVFYAVSERLGDPSILINNAAYSTHTRLEEL---T 115
Query: 293 NEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTA--VYGSTK 350
E++++ + N+ ++L + + D GG I N+ SG S P+ Y +TK
Sbjct: 116 AEQLDKHYAVNVRATMLLSSAFAKQY-DGKAGGRIINLT---SGQSLGPMPDELAYAATK 171
Query: 351 CGLRQLQASLFKESKRSKVGVHTASPGMVLT 381
+ SL E + V+ +PG T
Sbjct: 172 GAIEAFTKSLAPELAEKGITVNAVNPGPTDT 202
|
Length = 256 |
| >gnl|CDD|180822 PRK07069, PRK07069, short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 2e-06
Identities = 47/207 (22%), Positives = 83/207 (40%), Gaps = 23/207 (11%)
Query: 182 ITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVT-ELEENLKEGMMAAGGSSKKNL 240
ITG+ GLG+A+AR G +V + + + E+ EG+ A
Sbjct: 4 ITGAAGGLGRAIARRMAEQGAKVFLTDINDAAGLDAFAAEINAAHGEGVAFA-------- 55
Query: 241 VHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIV 300
DV + A Q L A + G + + +NNAG F + Q +E +++
Sbjct: 56 -------AVQDVTDEAQWQALLAQAADAMGGLSVLVNNAGVG-SFGAIEQIELDEWRRVM 107
Query: 301 STNLVGSILCTREAMRVMRD-QPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQAS 359
+ N+ L + A+ +R QP I N+ + + P Y ++K + L S
Sbjct: 108 AINVESIFLGCKHALPYLRASQP--ASIVNISSV-AAFKAEPDYTAYNASKAAVASLTKS 164
Query: 360 LFKESKRSKVGVHTAS--PGMVLTDLL 384
+ + R + V S P + T ++
Sbjct: 165 IALDCARRGLDVRCNSIHPTFIRTGIV 191
|
Length = 251 |
| >gnl|CDD|181188 PRK07985, PRK07985, oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (117), Expect = 2e-06
Identities = 48/216 (22%), Positives = 87/216 (40%), Gaps = 19/216 (8%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
R ++TG G+G+A A + G V ++ E E +++K+ + G
Sbjct: 50 RKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEE------EDAQDVKKIIEECG---- 99
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
K + D+ + + L + A G +DI AG + T+E+ +
Sbjct: 100 -----RKAVLLPGDLSDEKFARSLVHEAHKALGGLDIMALVAGKQVAIPDIADLTSEQFQ 154
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQ 357
+ + N+ T+EA+ ++ PKG I + S P Y +TK +
Sbjct: 155 KTFAINVFALFWLTQEAIPLL---PKGASIITTSSIQAYQPS-PHLLDYAATKAAILNYS 210
Query: 358 ASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNK 393
L K+ + V+ +PG + T L +SG Q+K
Sbjct: 211 RGLAKQVAEKGIRVNIVAPGPIWTALQISGGQTQDK 246
|
Length = 294 |
| >gnl|CDD|187656 cd08953, KR_2_SDR_x, ketoreductase (KR), subgroup 2, complex (x) SDRs | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 2e-06
Identities = 34/124 (27%), Positives = 51/124 (41%), Gaps = 24/124 (19%)
Query: 181 VITGSTRGLGKALAREFL-LSGDRVVVASRSS-----ESVRMTVTELEENLKEGMMAAGG 234
++TG G+G+ALAR G R+V+ RS E T+ LE +
Sbjct: 209 LVTGGAGGIGRALARALARRYGARLVLLGRSPLPPEEEWKAQTLAALEALGARVLY---- 264
Query: 235 SSKKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNE 294
I+ DV + A V++L +G+ID I+ AG + L Q T E
Sbjct: 265 -------------ISADVTDAAAVRRLLEKVRERYGAIDGVIHAAGVLRD-ALLAQKTAE 310
Query: 295 EIEQ 298
+ E
Sbjct: 311 DFEA 314
|
Ketoreductase, a module of the multidomain polyketide synthase (PKS), has 2 subdomains, each corresponding to a SDR family monomer. The C-terminal subdomain catalyzes the NADPH-dependent reduction of the beta-carbonyl of a polyketide to a hydroxyl group, a step in the biosynthesis of polyketides, such as erythromycin. The N-terminal subdomain, an interdomain linker, is a truncated Rossmann fold which acts to stabilizes the catalytic subdomain. Unlike typical SDRs, the isolated domain does not oligomerize but is composed of 2 subdomains, each resembling an SDR monomer. The active site resembles that of typical SDRs, except that the usual positions of the catalytic Asn and Tyr are swapped, so that the canonical YXXXK motif changes to YXXXN. Modular PKSs are multifunctional structures in which the makeup recapitulates that found in (and may have evolved from) FAS. Polyketide synthesis also proceeds via the addition of 2-carbon units as in fatty acid synthesis. The complex SDR NADP-binding motif, GGXGXXG, is often present, but is not strictly conserved in each instance of the module. This subfamily includes both KR domains of the Bacillus subtilis Pks J,-L, and PksM, and all three KR domains of PksN, components of the megacomplex bacillaene synthase, which synthesizes the antibiotic bacillaene. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type KRs have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 436 |
| >gnl|CDD|235914 PRK07041, PRK07041, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 3e-06
Identities = 55/205 (26%), Positives = 78/205 (38%), Gaps = 34/205 (16%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
+V+ GS+ G+G ALAR F G RV +ASRS + + L
Sbjct: 1 LVVGGSS-GIGLALARAFAAEGARVTIASRSRDRLAAAARALGG---------------- 43
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSID-IWINNAGTNKGFKPLLQFTNEEIEQ 298
A V A D+ + A V FA E G D + I A T G P+ +
Sbjct: 44 --GAPVRTAALDITDEAAVDAF--FA--EAGPFDHVVITAADTPGG--PVRALPLAAAQA 95
Query: 299 IVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQA 358
+ + G+ R A GG + + G + S + G+ L L
Sbjct: 96 AMDSKFWGAYRVARAA-----RIAPGGSLTFVSGFAAVRPS-ASGVLQGAINAALEALAR 149
Query: 359 SLFKESKRSKVGVHTASPGMVLTDL 383
L E + V V+T SPG+V T L
Sbjct: 150 GLALE--LAPVRVNTVSPGLVDTPL 172
|
Length = 230 |
| >gnl|CDD|183719 PRK12747, PRK12747, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (114), Expect = 4e-06
Identities = 65/258 (25%), Positives = 110/258 (42%), Gaps = 43/258 (16%)
Query: 181 VITGSTRGLGKALAREFLLSGDRVVV--ASRSSESVRMTVTELEENLKEGMMAAGGSSKK 238
++TG++RG+G+A+A+ G V + +R E+ TV E++ N GGS+
Sbjct: 8 LVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEA-EETVYEIQSN--------GGSA-- 56
Query: 239 NLVHAKVAGIACDVCEPADVQKLSNFAVNEFGS------IDIWINNAGTNKGFKPLLQFT 292
I ++ V+ L + NE + DI INNAG G ++ T
Sbjct: 57 -------FSIGANLESLHGVEALYSSLDNELQNRTGSTKFDILINNAGIGPG--AFIEET 107
Query: 293 NEE-IEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKC 351
E+ +++VS N ++A+ +RD + I N+ A + S P Y TK
Sbjct: 108 TEQFFDRMVSVNAKAPFFIIQQALSRLRDNSR---IINISSAAT-RISLPDFIAYSMTKG 163
Query: 352 GLRQLQASLFKESKRSKVGVHTASPGMVLTDL---LLS-------GSTIQNKQMFNIICE 401
+ + +L K+ + V+ PG + TD+ LLS +TI + +
Sbjct: 164 AINTMTFTLAKQLGARGITVNAILPGFIKTDMNAELLSDPMMKQYATTISAFNRLGEVED 223
Query: 402 LPETVARTLVPRIRVVKG 419
+ +T A P R V G
Sbjct: 224 IADTAAFLASPDSRWVTG 241
|
Length = 252 |
| >gnl|CDD|187654 cd08951, DR_C-13_KR_SDR_c_like, daunorubicin C-13 ketoreductase (KR), classical (c)-like SDRs | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 4e-06
Identities = 53/210 (25%), Positives = 83/210 (39%), Gaps = 32/210 (15%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
+ ITGS+ GLG A AR L G VV+ +RS + A K
Sbjct: 10 IFITGSSDGLGLAAARTLLHQGHEVVLHARSQKR---------------AADA----KAA 50
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQI 299
A I D+ A+ +KL++ VN G D I+NAG G P + + I +
Sbjct: 51 CPGAAGVLIG-DLSSLAETRKLAD-QVNAIGRFDAVIHNAGILSG--PNRKTPDTGIPAM 106
Query: 300 VSTNLVGSILCTREAMRVMR------DQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGL 353
V+ N++ + T R R +GG+ ++D + Y +K +
Sbjct: 107 VAVNVLAPYVLTALIRRPKRLIYLSSGMHRGGNA-SLDDIDWFNRGENDSPAYSDSKLHV 165
Query: 354 RQLQASLFKESKRSKVGVHTASPGMVLTDL 383
L A++ + K V + PG V T +
Sbjct: 166 LTLAAAVARRWK--DVSSNAVHPGWVPTKM 193
|
Daunorubicin is a clinically important therapeutic compound used in some cancer treatments. Daunorubicin C-13 ketoreductase is member of the classical SDR family with a canonical glycine-rich NAD(P)-binding motif, but lacking a complete match to the active site tetrad characteristic of this group. The critical Tyr, plus the Lys and upstream Asn are present, but the catalytic Ser is replaced, generally by Gln. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type KRs have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 260 |
| >gnl|CDD|183714 PRK12742, PRK12742, oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 4e-06
Identities = 47/209 (22%), Positives = 82/209 (39%), Gaps = 35/209 (16%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ V++ G +RG+G A+ R F+ G V GS
Sbjct: 7 KKVLVLGGSRGIGAAIVRRFVTDGANVR------------------------FTYAGSKD 42
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
A+ G + AD + + V + G++DI + NAG L + +I+
Sbjct: 43 AAERLAQETGATAVQTDSADRDAVIDV-VRKSGALDILVVNAGIAVFGDALELDAD-DID 100
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGS-GGSSTPLT--AVYGSTKCGLR 354
++ N+ + EA R M P+GG I + GS G P+ A Y ++K L+
Sbjct: 101 RLFKINIHAPYHASVEAARQM---PEGGRIIII---GSVNGDRMPVAGMAAYAASKSALQ 154
Query: 355 QLQASLFKESKRSKVGVHTASPGMVLTDL 383
+ L ++ + ++ PG + TD
Sbjct: 155 GMARGLARDFGPRGITINVVQPGPIDTDA 183
|
Length = 237 |
| >gnl|CDD|212495 cd09807, retinol-DH_like_SDR_c, retinol dehydrogenases (retinol-DHs), classical (c) SDRs | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 8e-06
Identities = 57/220 (25%), Positives = 90/220 (40%), Gaps = 36/220 (16%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ V+ITG+ G+GK ARE G RV++A R ++ + AA +
Sbjct: 2 KTVIITGANTGIGKETARELARRGARVIMACR--------------DMAKCEEAAAEIRR 47
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFA---VNEFGSIDIWINNAG--------TNKGFK 286
L H + + A ++ + FA + E +D+ INNAG T GF+
Sbjct: 48 DTLNHE----VIVRHLDLASLKSIRAFAAEFLAEEDRLDVLINNAGVMRCPYSKTEDGFE 103
Query: 287 PLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQP---KGGHIFNMDGAGSGGSSTPLT 343
+QF + + TNL+ +L R++ K G I N D S S
Sbjct: 104 --MQFGVNHLGHFLLTNLLLDLLKKSAPSRIVNVSSLAHKAGKI-NFDDLNSEKSYNTGF 160
Query: 344 AVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDL 383
A Y +K L + + + V V+ PG+V T+L
Sbjct: 161 A-YCQSKLANVLFTRELARRLQGTGVTVNALHPGVVRTEL 199
|
Classical SDR-like subgroup containing retinol-DHs and related proteins. Retinol is processed by a medium chain alcohol dehydrogenase followed by retinol-DHs. Proteins in this subfamily share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. This subgroup includes the human proteins: retinol dehydrogenase -12, -13 ,and -14. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 274 |
| >gnl|CDD|236207 PRK08261, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 1e-05
Identities = 27/106 (25%), Positives = 42/106 (39%), Gaps = 21/106 (19%)
Query: 175 AGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGG 234
AG +V TG+ RG+G A+A G VV + V E L GG
Sbjct: 209 AGKVALV-TGAARGIGAAIAEVLARDGAHVVC---------LDVPAAGEALAAVANRVGG 258
Query: 235 SSKKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAG 280
++ +A D+ P +++ G +DI ++NAG
Sbjct: 259 TA-----------LALDITAPDAPARIAEHLAERHGGLDIVVHNAG 293
|
Length = 450 |
| >gnl|CDD|222222 pfam13561, adh_short_C2, Enoyl-(Acyl carrier protein) reductase | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 2e-05
Identities = 46/221 (20%), Positives = 71/221 (32%), Gaps = 28/221 (12%)
Query: 184 GSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHA 243
+ A+A+ G VV+ + V EL + L A
Sbjct: 3 ADDNSIAWAIAKAAAEEGAEVVLTTWPPALRMGAVDELAKELP----------------A 46
Query: 244 KVAGIACDVCEPADVQKLSNFAVNEFGSIDIWIN---NAGTNKGFKPLLQFTNEEIEQIV 300
V I DV D+ +L + G ID ++ + + KP L + E + +
Sbjct: 47 DV--IPLDVTSDEDIDELFEKVKEDGGKIDFLVHSIAMSPEIRKGKPYLDTSREGFLKAL 104
Query: 301 STNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASL 360
+ I + A +M +GG I + + P G K L L L
Sbjct: 105 DISAYSFISLAKAAKPLM---NEGGSIVALSYIAAER-VFPGYGGMGVAKAALESLARYL 160
Query: 361 FKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICE 401
E R + V+T S G T +GS I E
Sbjct: 161 AYELGRKGIRVNTISAGPTKT---TAGSGIGGFDKMVEYAE 198
|
Length = 239 |
| >gnl|CDD|171822 PRK12938, PRK12938, acetyacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (108), Expect = 2e-05
Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 6/136 (4%)
Query: 268 EFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHI 327
E G ID+ +NNAG + + T E+ ++ TNL T++ + M ++ G I
Sbjct: 78 EVGEIDVLVNNAGITRDVV-FRKMTREDWTAVIDTNLTSLFNVTKQVIDGMVER-GWGRI 135
Query: 328 FNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSG 387
N+ T Y + K G+ SL +E V V+T SPG + TD++
Sbjct: 136 INISSVNGQKGQFGQTN-YSTAKAGIHGFTMSLAQEVATKGVTVNTVSPGYIGTDMV--- 191
Query: 388 STIQNKQMFNIICELP 403
I+ + I+ +P
Sbjct: 192 KAIRPDVLEKIVATIP 207
|
Length = 246 |
| >gnl|CDD|214833 smart00822, PKS_KR, This enzymatic domain is part of bacterial polyketide synthases | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 3e-05
Identities = 33/132 (25%), Positives = 50/132 (37%), Gaps = 22/132 (16%)
Query: 180 VVITGSTRGLGKALAREFLLSGDR-VVVASRS---SESVRMTVTELEENLKEGMMAAGGS 235
+ITG GLG+ALAR G R +V+ SRS + + ELE
Sbjct: 3 YLITGGLGGLGRALARWLAERGARRLVLLSRSGPDAPGAAALLAELEAAG---------- 52
Query: 236 SKKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEE 295
A+V +ACDV + + + G + I+ AG L T E
Sbjct: 53 -------ARVTVVACDVADRDALAAVLAAIPAVEGPLTGVIHAAGVLD-DGVLASLTPER 104
Query: 296 IEQIVSTNLVGS 307
+++ G+
Sbjct: 105 FAAVLAPKAAGA 116
|
It catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. Length = 180 |
| >gnl|CDD|187666 cd09806, type1_17beta-HSD-like_SDR_c, human estrogenic 17beta-hydroxysteroid dehydrogenase type 1 (type 1 17beta-HSD)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 4e-05
Identities = 50/209 (23%), Positives = 78/209 (37%), Gaps = 28/209 (13%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEG---MMAAGG 234
V+ITG + G+G LA L+ D S R V +LK+ AAG
Sbjct: 1 TVVLITGCSSGIGLHLA--VRLASD---------PSKRFKVYATMRDLKKKGRLWEAAGA 49
Query: 235 SSKKNLVHAKVAGIACDVCEPADVQKLSNFAVNEF--GSIDIWINNAGTNKGFKPLLQFT 292
+ L ++ DVC+ V AV +D+ + NAG PL +
Sbjct: 50 LAGGTLETLQL-----DVCDSKSVAA----AVERVTERHVDVLVCNAGVGL-LGPLEALS 99
Query: 293 NEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCG 352
+ + + N+ G++ + + M+ + G I G G P VY ++K
Sbjct: 100 EDAMASVFDVNVFGTVRMLQAFLPDMKRR-GSGRILVTSSVG-GLQGLPFNDVYCASKFA 157
Query: 353 LRQLQASLFKESKRSKVGVHTASPGMVLT 381
L L SL + V + G V T
Sbjct: 158 LEGLCESLAVQLLPFNVHLSLIECGPVHT 186
|
17beta-hydroxysteroid dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. This classical SDR subgroup includes human type 1 17beta-HSD, human retinol dehydrogenase 8, zebrafish photoreceptor associated retinol dehydrogenase type 2, and a chicken ovary-specific 17beta-hydroxysteroid dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 258 |
| >gnl|CDD|233441 TIGR01500, sepiapter_red, sepiapterin reductase | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 4e-05
Identities = 48/216 (22%), Positives = 88/216 (40%), Gaps = 31/216 (14%)
Query: 181 VITGSTRGLGKALAREFLLS----GDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSS 236
++TG++RG G+ +A+E G +V+++R+ E++R E+ G+
Sbjct: 4 LVTGASRGFGRTIAQELAKCLKSPGSVLVLSARNDEALRQLKAEI------------GAE 51
Query: 237 KKNLVHAKVAGIACDVCEPADVQKL-----SNFAVNEFGSIDIWINNAGT----NKGFKP 287
+ L V ++ D+ A +++L + + INNAGT +KGF
Sbjct: 52 RSGLR---VVRVSLDLGAEAGLEQLLKALRELPRPKGLQRL-LLINNAGTLGDVSKGFVD 107
Query: 288 LLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYG 347
L T ++ + NL + T ++ +D P + A+Y
Sbjct: 108 LSDSTQ--VQNYWALNLTSMLCLTSSVLKAFKDSPGLNRTVVNISSLCAIQPFKGWALYC 165
Query: 348 STKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDL 383
+ K L L E K V V +PG++ TD+
Sbjct: 166 AGKAARDMLFQVLALEEKNPNVRVLNYAPGVLDTDM 201
|
This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs. Length = 256 |
| >gnl|CDD|181605 PRK08993, PRK08993, 2-deoxy-D-gluconate 3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 5e-05
Identities = 48/204 (23%), Positives = 91/204 (44%), Gaps = 25/204 (12%)
Query: 181 VITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNL 240
V+TG GLG+ +A + +A + V + + E E + E + A G
Sbjct: 14 VVTGCDTGLGQGMA---------LGLAEAGCDIVGINIVEPTETI-EQVTALG------- 56
Query: 241 VHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIV 300
+ + D+ + + L AV EFG IDI +NNAG + + ++F+ ++ + ++
Sbjct: 57 --RRFLSLTADLRKIDGIPALLERAVAEFGHIDILVNNAGLIRR-EDAIEFSEKDWDDVM 113
Query: 301 STNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGS--GGSSTPLTAVYGSTKCGLRQLQA 358
+ N+ ++ A + Q GG I N+ S GG P Y ++K G+ +
Sbjct: 114 NLNIKSVFFMSQAAAKHFIAQGNGGKIINIASMLSFQGGIRVP---SYTASKSGVMGVTR 170
Query: 359 SLFKESKRSKVGVHTASPGMVLTD 382
+ E + + V+ +PG + T+
Sbjct: 171 LMANEWAKHNINVNAIAPGYMATN 194
|
Length = 253 |
| >gnl|CDD|169556 PRK08703, PRK08703, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 7e-05
Identities = 38/183 (20%), Positives = 75/183 (40%), Gaps = 23/183 (12%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ +++TG+++GLG+ +A+ + +G V++ +R + + E + + ++ AG
Sbjct: 7 KTILVTGASQGLGEQVAKAYAAAGATVILVARHQKKL--------EKVYDAIVEAG---- 54
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVN---EF-GSIDIWINNAGTNKGFKPLLQFTN 293
H + I D+ + ++ FA G +D ++ AG PL T
Sbjct: 55 ----HPEPFAIRFDLMSAEE-KEFEQFAATIAEATQGKLDGIVHCAGYFYALSPLDFQTV 109
Query: 294 EEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGL 353
E N V + TR +++ P IF G G + +G++K L
Sbjct: 110 AEWVNQYRINTVAPMGLTRALFPLLKQSPDASVIFV--GESHGETPKAYWGGFGASKAAL 167
Query: 354 RQL 356
L
Sbjct: 168 NYL 170
|
Length = 239 |
| >gnl|CDD|236173 PRK08177, PRK08177, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 7e-05
Identities = 46/225 (20%), Positives = 71/225 (31%), Gaps = 59/225 (26%)
Query: 177 PRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSS 236
R +I G++RGLG L L G +V R + + L+
Sbjct: 1 KRTALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQ--------DTALQA--------- 43
Query: 237 KKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGS-IDIWINNAG-TNKGFKPLLQFTNE 294
+ G+ + + D L G D+ NAG + + T
Sbjct: 44 --------LPGVHIEKLDMNDPASLDQLLQRLQGQRFDLLFVNAGISGPAHQSAADATAA 95
Query: 295 EIEQIVSTNLVGSI-LCTREAMRVMRDQ---------------PKGGHIFNMDGAGSGGS 338
EI Q+ TN + I L R +V Q P GG +
Sbjct: 96 EIGQLFLTNAIAPIRLARRLLGQVRPGQGVLAFMSSQLGSVELPDGGEM----------- 144
Query: 339 STPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDL 383
+Y ++K L + S E + V + PG V TD+
Sbjct: 145 -----PLYKASKAALNSMTRSFVAELGEPTLTVLSMHPGWVKTDM 184
|
Length = 225 |
| >gnl|CDD|181762 PRK09291, PRK09291, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 1e-04
Identities = 51/248 (20%), Positives = 90/248 (36%), Gaps = 43/248 (17%)
Query: 177 PRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSS 236
+ ++ITG+ G G+ +A G V+ + + V T L G +
Sbjct: 2 SKTILITGAGSGFGREVALRLARKGHNVIAGVQIAPQV----TALRAEAAR----RGLA- 52
Query: 237 KKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEI 296
+ D+ + D + + + +D+ +NNAG + ++ E +
Sbjct: 53 --------LRVEKLDLTDAIDRAQAAEW------DVDVLLNNAGIGEA-GAVVDIPVELV 97
Query: 297 EQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSST-PLTAVYGSTKCGLRQ 355
++ TN+ G + T+ +R M + KG +F + G T P T Y ++K L
Sbjct: 98 RELFETNVFGPLELTQGFVRKMVARGKGKVVFT---SSMAGLITGPFTGAYCASKHALEA 154
Query: 356 LQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPRIR 415
+ ++ E K + V T +PG LT N M ET R P
Sbjct: 155 IAEAMHAELKPFGIQVATVNPGPYLTGF--------NDTMA-------ETPKRWYDPARN 199
Query: 416 VVKGSGKA 423
A
Sbjct: 200 FTDPEDLA 207
|
Length = 257 |
| >gnl|CDD|181508 PRK08628, PRK08628, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 2e-04
Identities = 31/126 (24%), Positives = 50/126 (39%), Gaps = 20/126 (15%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
V++TG G+G A++ G V+ RS+ E E L+ A ++
Sbjct: 10 VIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDD-----EFAEELR----ALQPRAEF- 59
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQI 299
+ D+ + A + V +FG ID +NNAG N G L+ E
Sbjct: 60 --------VQVDLTDDAQCRDAVEQTVAKFGRIDGLVNNAGVNDGVG--LEAGREAFVAS 109
Query: 300 VSTNLV 305
+ NL+
Sbjct: 110 LERNLI 115
|
Length = 258 |
| >gnl|CDD|235737 PRK06197, PRK06197, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 38/125 (30%), Positives = 50/125 (40%), Gaps = 26/125 (20%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
R V+TG+ GLG A G VV+A R NL +G AA +
Sbjct: 17 RVAVVTGANTGLGYETAAALAAKGAHVVLAVR--------------NLDKGKAAAARITA 62
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAG--------TNKGFKPLL 289
A V D+ A V+ ++ + ID+ INNAG T GF+ L
Sbjct: 63 AT-PGADVTLQELDLTSLASVRAAADALRAAYPRIDLLINNAGVMYTPKQTTADGFE--L 119
Query: 290 QF-TN 293
QF TN
Sbjct: 120 QFGTN 124
|
Length = 306 |
| >gnl|CDD|219957 pfam08659, KR, KR domain | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 3e-04
Identities = 33/129 (25%), Positives = 53/129 (41%), Gaps = 16/129 (12%)
Query: 180 VVITGSTRGLGKALAREFLLSGDR-VVVASRSSESVRMTVTELEENLKEGMMAAGGSSKK 238
++TG GLG LAR G R +V+ SRS L E + A G
Sbjct: 3 YLVTGGLGGLGLELARWLAERGARHLVLLSRSGAPDPEAEALLAE------LEARG---- 52
Query: 239 NLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQ 298
A+V +ACDV + V+ L + + I+ AG + L T E+ +
Sbjct: 53 ----AEVTVVACDVSDRDAVRALLAEIRADGPPLRGVIHAAGVLR-DALLANMTAEDFAR 107
Query: 299 IVSTNLVGS 307
+++ + G+
Sbjct: 108 VLAPKVTGA 116
|
This enzymatic domain is part of bacterial polyketide synthases and catalyzes the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. Length = 181 |
| >gnl|CDD|130890 TIGR01831, fabG_rel, 3-oxoacyl-(acyl-carrier-protein) reductase, putative | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 3e-04
Identities = 52/208 (25%), Positives = 90/208 (43%), Gaps = 24/208 (11%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
V++TG++RG+G+A+A G + V S ++ E + + A GG+++
Sbjct: 1 VLVTGASRGIGRAIANRLAADGFEICVHYHSGR------SDAESVVSA-IQAQGGNAR-- 51
Query: 240 LVHAKVAG-IACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNK--GFKPLLQFTNEEI 296
L+ VA +AC AD+ E G+ + NAG + F L + E+
Sbjct: 52 LLQFDVADRVACRTLLEADIA--------EHGAYYGVVLNAGITRDAAFPAL---SEEDW 100
Query: 297 EQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQL 356
+ ++ TNL G M +GG I + SG Y + K GL
Sbjct: 101 DIVIHTNLDGFYNVIHPCTMPMIRARQGGRIITLASV-SGVMGNRGQVNYSAAKAGLIGA 159
Query: 357 QASLFKESKRSKVGVHTASPGMVLTDLL 384
+L E + K+ V+ +PG++ T++L
Sbjct: 160 TKALAVELAKRKITVNCIAPGLIDTEML 187
|
This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found [Fatty acid and phospholipid metabolism, Biosynthesis]. Length = 239 |
| >gnl|CDD|181198 PRK08017, PRK08017, oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 7e-04
Identities = 70/288 (24%), Positives = 107/288 (37%), Gaps = 56/288 (19%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESV-RMTVTELEENLKEGMMAAGGSS 236
++V+ITG + G+G A E G RV+ A R + V RM
Sbjct: 3 KSVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDVARMNSLGFT-------------- 48
Query: 237 KKNLVHAKVAGIACDVCEPADVQKLSNFAVNEF-----GSIDIWINNAGTNKGFKPLLQF 291
GI D+ +P V++ A +E + NNAG + PL
Sbjct: 49 ----------GILLDLDDPESVER----AADEVIALTDNRLYGLFNNAGFGV-YGPLSTI 93
Query: 292 TNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKC 351
+ +++EQ STN G+ T + M +G + M + G STP Y ++K
Sbjct: 94 SRQQMEQQFSTNFFGTHQLTMLLLPAMLPHGEGRIV--MTSSVMGLISTPGRGAYAASKY 151
Query: 352 GLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLS-GSTIQNKQMFNIICELPETVARTL 410
L +L E + S + V PG + T + T +K + N P AR
Sbjct: 152 ALEAWSDALRMELRHSGIKVSLIEPGPIRTRFTDNVNQTQSDKPVEN-----PGIAARFT 206
Query: 411 VPRIRVVKGSGKAINYLTPPR-------ILLALVTAWLRR---GRWFD 448
+ VV K + L P+ L+ L+R GR D
Sbjct: 207 LGPEAVVP---KLRHALESPKPKLRYPVTLVTHAVMVLKRLLPGRMMD 251
|
Length = 256 |
| >gnl|CDD|187582 cd05274, KR_FAS_SDR_x, ketoreductase (KR) and fatty acid synthase (FAS), complex (x) SDRs | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 8e-04
Identities = 30/111 (27%), Positives = 43/111 (38%), Gaps = 19/111 (17%)
Query: 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDR-VVVASRSSESVRMTVTELEENLKEGMMA 231
+ITG GLG +AR G R +V+ SR + R
Sbjct: 146 PGGLDGTYLITGGLGGLGLLVARWLAARGARHLVLLSRRGPAPRAAARAALL-------R 198
Query: 232 AGGSSKKNLVHAKVAGIACDVCEPADVQKLSNFA-VNEFGSIDIWINNAGT 281
AGG A+V+ + CDV +PA + L A + G + I+ AG
Sbjct: 199 AGG--------ARVSVVRCDVTDPAALAAL--LAELAAGGPLAGVIHAAGV 239
|
Ketoreductase, a module of the multidomain polyketide synthase (PKS), has 2 subdomains, each corresponding to a SDR family monomer. The C-terminal subdomain catalyzes the NADPH-dependent reduction of the beta-carbonyl of a polyketide to a hydroxyl group, a step in the biosynthesis of polyketides, such as erythromycin. The N-terminal subdomain, an interdomain linker, is a truncated Rossmann fold which acts to stabilizes the catalytic subdomain. Unlike typical SDRs, the isolated domain does not oligomerize but is composed of 2 subdomains, each resembling an SDR monomer. The active site resembles that of typical SDRs, except that the usual positions of the catalytic Asn and Tyr are swapped, so that the canonical YXXXK motif changes to YXXXN. Modular PKSs are multifunctional structures in which the makeup recapitulates that found in (and may have evolved from) FAS. In some instances, such as porcine FAS, an enoyl reductase (ER) module is inserted between the sub-domains. Fatty acid synthesis occurs via the stepwise elongation of a chain (which is attached to acyl carrier protein, ACP) with 2-carbon units. Eukaryotic systems consist of large, multifunctional synthases (type I) while bacterial, type II systems, use single function proteins. Fungal fatty acid synthase uses a dodecamer of 6 alpha and 6 beta subunits. In mammalian type FAS cycles, ketoacyl synthase forms acetoacetyl-ACP which is reduced by the NADP-dependent beta-KR, forming beta-hydroxyacyl-ACP, which is in turn dehydrated by dehydratase to a beta-enoyl intermediate, which is reduced by NADP-dependent beta-ER. Polyketide synthesis also proceeds via the addition of 2-carbon units as in fatty acid synthesis. The complex SDR NADP-binding motif, GGXGXXG, is often present, but is not strictly conserved in each instance of the module. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type KRs have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 375 |
| >gnl|CDD|187619 cd05361, haloalcohol_DH_SDR_c-like, haloalcohol dehalogenase, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.001
Identities = 22/107 (20%), Positives = 39/107 (36%), Gaps = 2/107 (1%)
Query: 270 GSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFN 329
G+ID+ ++N + P+ + +I Q + + A+ M+ G IF
Sbjct: 71 GAIDVLVSNDYIPRPMNPIDGTSEADIRQAFEALSIFPFALLQAAIAQMKKAGGGSIIFI 130
Query: 330 MDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASP 376
++YG + L SL KE R + V+ P
Sbjct: 131 TSAVPKKP--LAYNSLYGPARAAAVALAESLAKELSRDNILVYAIGP 175
|
Dehalogenases cleave carbon-halogen bonds. Haloalcohol dehalogenase show low sequence similarity to short-chain dehydrogenases/reductases (SDRs). Like the SDRs, haloalcohol dehalogenases have a conserved catalytic triad (Ser-Tyr-Lys/Arg), and form a Rossmann fold. However, the normal classical SDR NAD(P)-binding motif (TGXXGXG) and NAD-binding function is replaced with a halide binding site, allowing the enzyme to catalyze a dehalogenation reaction. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 242 |
| >gnl|CDD|187547 cd05236, FAR-N_SDR_e, fatty acyl CoA reductases (FARs), extended (e) SDRs | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.001
Identities = 35/142 (24%), Positives = 62/142 (43%), Gaps = 32/142 (22%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGD---RVVVASRSSESVRMTVTELEENLKEGMMAA-- 232
++V+ITG+T LGK L + L S ++ + R EE L+E +
Sbjct: 1 KSVLITGATGFLGKVLLEKLLRSCPDIGKIYLLIRGKSGQS-----AEERLRELLKDKLF 55
Query: 233 -GGSSKKNLVHAKVAGIACDVCEP------ADVQKLSNFAVNEFGSIDIWINNAGTNKGF 285
G + L +K+ I D+ EP D+Q L ++I I+ A T
Sbjct: 56 DRGRNLNPLFESKIVPIEGDLSEPNLGLSDEDLQTLIE-------EVNIIIHCAAT---- 104
Query: 286 KPLLQFTNEEIEQIVSTNLVGS 307
+ F +E +++ +S N++G+
Sbjct: 105 ---VTF-DERLDEALSINVLGT 122
|
SDRs are Rossmann-fold NAD(P)H-binding proteins, many of which may function as fatty acyl CoA reductases (FAR), acting on medium and long chain fatty acids, and have been reported to be involved in diverse processes such as biosynthesis of insect pheromones, plant cuticular wax production, and mammalian wax biosynthesis. In Arabidopsis thaliana, proteins with this particular architecture have also been identified as the MALE STERILITY 2 (MS2) gene product, which is implicated in male gametogenesis. Mutations in MS2 inhibit the synthesis of exine (sporopollenin), rendering plants unable to reduce pollen wall fatty acids to corresponding alcohols. This N-terminal domain shares the catalytic triad (but not the upstream Asn) and characteristic NADP-binding motif of the extended SDR family. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 320 |
| >gnl|CDD|212497 cd11731, Lin1944_like_SDR_c, Lin1944 and related proteins, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.001
Identities = 31/148 (20%), Positives = 58/148 (39%), Gaps = 42/148 (28%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
+++ G+T +G A+A+ G V+ A RSS
Sbjct: 1 IIVIGATGTIGLAVAQLLSAHGHEVITAGRSSGDY------------------------- 35
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQI 299
D+ + A ++ L F + G D ++ AG + F PL + T+ + ++
Sbjct: 36 ---------QVDITDEASIKAL--FE--KVGHFDAIVSTAGDAE-FAPLAELTDADFQRG 81
Query: 300 VSTNLVGSILCTREAMRVMRDQPKGGHI 327
+++ L+G I R + + D GG I
Sbjct: 82 LNSKLLGQINLVRHGLPYLND---GGSI 106
|
Lin1944 protein from Listeria Innocua is a classical SDR, it contains a glycine-rich motif similar to the canonical motif of the SDR NAD(P)-binding site. However, the typical SDR active site residues are absent in this subgroup of proteins of undetermined function. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 198 |
| >gnl|CDD|187670 cd09810, LPOR_like_SDR_c_like, light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.002
Identities = 35/139 (25%), Positives = 51/139 (36%), Gaps = 26/139 (18%)
Query: 179 NVVITGSTRGLGKALAREFLLSGD-RVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
VVITG++ GLG A A+ G+ VV+A R E+ +E M S
Sbjct: 3 TVVITGASSGLGLAAAKALARRGEWHVVMACRDFLKA-------EQAAQEVGMPKDSYS- 54
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEF----GSIDIWINNAGTNKGFKPLLQFTN 293
C+ A + + F V+ F +D + NA +FT
Sbjct: 55 ------------VLHCDLASLDSVRQF-VDNFRRTGRPLDALVCNAAVYLPTAKEPRFTA 101
Query: 294 EEIEQIVSTNLVGSILCTR 312
+ E V N +G L T
Sbjct: 102 DGFELTVGVNHLGHFLLTN 120
|
Classical SDR-like subgroup containing LPOR and related proteins. Protochlorophyllide (Pchlide) reductases act in chlorophyll biosynthesis. There are distinct enzymes that catalyze Pchlide reduction in light or dark conditions. Light-dependent reduction is via an NADP-dependent SDR, LPOR. Proteins in this subfamily share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 311 |
| >gnl|CDD|236229 PRK08303, PRK08303, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.002
Identities = 32/102 (31%), Positives = 45/102 (44%), Gaps = 15/102 (14%)
Query: 181 VITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELE--ENLKEGMMAAGGSSKK 238
++ G+TRG G+ +A E +G V V RS+ + R E E E + AAGG
Sbjct: 12 LVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGR--- 68
Query: 239 NLVHAKVAGIA--CDVCEPADVQKLSNFAVNEFGSIDIWINN 278
GIA D P V+ L E G +DI +N+
Sbjct: 69 --------GIAVQVDHLVPEQVRALVERIDREQGRLDILVND 102
|
Length = 305 |
| >gnl|CDD|236357 PRK08945, PRK08945, putative oxoacyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.002
Identities = 37/162 (22%), Positives = 70/162 (43%), Gaps = 18/162 (11%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
R +++TG+ G+G+ A + G V++ R T +LE E + AAG
Sbjct: 13 RIILVTGAGDGIGREAALTYARHGATVILLGR-------TEEKLEAVYDE-IEAAG---- 60
Query: 238 KNLVHAKVAGIACDV--CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEE 295
+ A I D+ P + Q+L++ +FG +D ++NAG P+ Q E
Sbjct: 61 ----GPQPAIIPLDLLTATPQNYQQLADTIEEQFGRLDGVLHNAGLLGELGPMEQQDPEV 116
Query: 296 IEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGG 337
+ ++ N+ + + T+ + ++ P +F G G
Sbjct: 117 WQDVMQVNVNATFMLTQALLPLLLKSPAASLVFTSSSVGRQG 158
|
Length = 247 |
| >gnl|CDD|181417 PRK08416, PRK08416, 7-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 0.003
Identities = 34/163 (20%), Positives = 66/163 (40%), Gaps = 23/163 (14%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESV-RMTVTELEENLKEGMMAAGGSS 236
+ +VI+G TRG+GKA+ EF SG + S+ +LE+
Sbjct: 9 KTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDLEQKYG---------- 58
Query: 237 KKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNA-----GTNKGFKPLLQF 291
K ++ EP ++L +F +D +I+NA G+ ++
Sbjct: 59 ------IKAKAYPLNILEPETYKELFKKIDEDFDRVDFFISNAIISGRAVVGGYTKFMRL 112
Query: 292 TNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAG 334
+ + I + + ++ +EA + M ++ GG I ++ G
Sbjct: 113 KPKGLNNIYTATVNAFVVGAQEAAKRM-EKVGGGSIISLSSTG 154
|
Length = 260 |
| >gnl|CDD|180399 PRK06101, PRK06101, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 38.7 bits (90), Expect = 0.004
Identities = 48/213 (22%), Positives = 83/213 (38%), Gaps = 47/213 (22%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
V+ITG+T G+GK LA ++ G +V+ R+ + EL
Sbjct: 4 VLITGATSGIGKQLALDYAKQGWQVIACGRNQS----VLDELHT---------------- 43
Query: 240 LVHAKVAGIACDVCE-PADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEI-- 296
A + +A DV + P LS ++WI NAG ++ ++
Sbjct: 44 -QSANIFTLAFDVTDHPGTKAALSQLPFIP----ELWIFNAGD-------CEYMDDGKVD 91
Query: 297 ----EQIVSTNLVGSILCTREAMRVMRDQP--KGGHIFNMDGAGSGGSSTPLTAVYGSTK 350
++ + N++G C E + QP GH + G+ + + P YG++K
Sbjct: 92 ATLMARVFNVNVLGVANCI-EGI-----QPHLSCGHRVVIVGSIASELALPRAEAYGASK 145
Query: 351 CGLRQLQASLFKESKRSKVGVHTASPGMVLTDL 383
+ +L + + + V T PG V T L
Sbjct: 146 AAVAYFARTLQLDLRPKGIEVVTVFPGFVATPL 178
|
Length = 240 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 512 | |||
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 100.0 | |
| COG4221 | 246 | Short-chain alcohol dehydrogenase of unknown speci | 100.0 | |
| KOG1200 | 256 | consensus Mitochondrial/plastidial beta-ketoacyl-A | 100.0 | |
| PRK08339 | 263 | short chain dehydrogenase; Provisional | 100.0 | |
| KOG1205 | 282 | consensus Predicted dehydrogenase [Secondary metab | 100.0 | |
| PRK12481 | 251 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 100.0 | |
| KOG1201 | 300 | consensus Hydroxysteroid 17-beta dehydrogenase 11 | 100.0 | |
| PRK06079 | 252 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK08415 | 274 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK06505 | 271 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 100.0 | |
| KOG0725 | 270 | consensus Reductases with broad range of substrate | 100.0 | |
| PRK06603 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK07370 | 258 | enoyl-(acyl carrier protein) reductase; Validated | 100.0 | |
| PRK07533 | 258 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK07063 | 260 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK08690 | 261 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK08589 | 272 | short chain dehydrogenase; Validated | 100.0 | |
| PRK08303 | 305 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07478 | 254 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07062 | 265 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK08594 | 257 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK07984 | 262 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK06114 | 254 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK08159 | 272 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK08416 | 260 | 7-alpha-hydroxysteroid dehydrogenase; Provisional | 100.0 | |
| PRK06997 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK08993 | 253 | 2-deoxy-D-gluconate 3-dehydrogenase; Validated | 100.0 | |
| PLN02730 | 303 | enoyl-[acyl-carrier-protein] reductase | 100.0 | |
| PRK08340 | 259 | glucose-1-dehydrogenase; Provisional | 100.0 | |
| PRK07791 | 286 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK08085 | 254 | gluconate 5-dehydrogenase; Provisional | 100.0 | |
| PRK07889 | 256 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK07035 | 252 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK08277 | 278 | D-mannonate oxidoreductase; Provisional | 100.0 | |
| PRK06200 | 263 | 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog | 100.0 | |
| PRK06935 | 258 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 100.0 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07985 | 294 | oxidoreductase; Provisional | 100.0 | |
| TIGR03325 | 262 | BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro | 100.0 | |
| PRK08643 | 256 | acetoin reductase; Validated | 100.0 | |
| PF13561 | 241 | adh_short_C2: Enoyl-(Acyl carrier protein) reducta | 100.0 | |
| PRK12747 | 252 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06398 | 258 | aldose dehydrogenase; Validated | 100.0 | |
| PRK06172 | 253 | short chain dehydrogenase; Provisional | 100.0 | |
| TIGR01832 | 248 | kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod | 100.0 | |
| PRK06125 | 259 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06128 | 300 | oxidoreductase; Provisional | 100.0 | |
| PRK06463 | 255 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 100.0 | |
| PRK07831 | 262 | short chain dehydrogenase; Provisional | 100.0 | |
| KOG1207 | 245 | consensus Diacetyl reductase/L-xylulose reductase | 100.0 | |
| PRK12859 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 100.0 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 100.0 | |
| PRK08936 | 261 | glucose-1-dehydrogenase; Provisional | 100.0 | |
| PRK06113 | 255 | 7-alpha-hydroxysteroid dehydrogenase; Validated | 100.0 | |
| PRK07097 | 265 | gluconate 5-dehydrogenase; Provisional | 100.0 | |
| PRK08862 | 227 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 100.0 | |
| PLN02253 | 280 | xanthoxin dehydrogenase | 100.0 | |
| PLN00015 | 308 | protochlorophyllide reductase | 100.0 | |
| PRK05876 | 275 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07677 | 252 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK05599 | 246 | hypothetical protein; Provisional | 100.0 | |
| PRK12823 | 260 | benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat | 100.0 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 100.0 | |
| PRK06300 | 299 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK07067 | 257 | sorbitol dehydrogenase; Provisional | 100.0 | |
| PRK05854 | 313 | short chain dehydrogenase; Provisional | 100.0 | |
| PLN02780 | 320 | ketoreductase/ oxidoreductase | 100.0 | |
| PRK06940 | 275 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07856 | 252 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06523 | 260 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK05872 | 296 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06171 | 266 | sorbitol-6-phosphate 2-dehydrogenase; Provisional | 100.0 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 100.0 | |
| PRK08226 | 263 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK12743 | 256 | oxidoreductase; Provisional | 100.0 | |
| PRK06196 | 315 | oxidoreductase; Provisional | 100.0 | |
| PRK06841 | 255 | short chain dehydrogenase; Provisional | 100.0 | |
| KOG1208 | 314 | consensus Dehydrogenases with different specificit | 100.0 | |
| TIGR01289 | 314 | LPOR light-dependent protochlorophyllide reductase | 100.0 | |
| PRK06949 | 258 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK05717 | 255 | oxidoreductase; Validated | 100.0 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07825 | 273 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 100.0 | |
| TIGR01500 | 256 | sepiapter_red sepiapterin reductase. This model de | 100.0 | |
| TIGR02415 | 254 | 23BDH acetoin reductases. One member of this famil | 100.0 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK12938 | 246 | acetyacetyl-CoA reductase; Provisional | 100.0 | |
| PRK08278 | 273 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK08642 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 100.0 | |
| PRK07814 | 263 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06483 | 236 | dihydromonapterin reductase; Provisional | 100.0 | |
| PRK07792 | 306 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 100.0 | |
| PRK05855 | 582 | short chain dehydrogenase; Validated | 100.0 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK08628 | 258 | short chain dehydrogenase; Provisional | 100.0 | |
| KOG4169 | 261 | consensus 15-hydroxyprostaglandin dehydrogenase an | 100.0 | |
| PRK12384 | 259 | sorbitol-6-phosphate dehydrogenase; Provisional | 100.0 | |
| TIGR01831 | 239 | fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductas | 100.0 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 100.0 | |
| PRK06197 | 306 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK12748 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 100.0 | |
| PRK07453 | 322 | protochlorophyllide oxidoreductase; Validated | 100.0 | |
| PRK08063 | 250 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| KOG1610 | 322 | consensus Corticosteroid 11-beta-dehydrogenase and | 100.0 | |
| PRK12744 | 257 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06180 | 277 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK12937 | 245 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06500 | 249 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK08220 | 252 | 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | 100.0 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 99.98 | |
| PRK07024 | 257 | short chain dehydrogenase; Provisional | 99.98 | |
| PRK12742 | 237 | oxidoreductase; Provisional | 99.98 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 99.98 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.98 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 99.98 | |
| PRK06550 | 235 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.98 | |
| COG3967 | 245 | DltE Short-chain dehydrogenase involved in D-alani | 99.98 | |
| PRK06138 | 252 | short chain dehydrogenase; Provisional | 99.98 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 99.98 | |
| PRK05650 | 270 | short chain dehydrogenase; Provisional | 99.98 | |
| TIGR03206 | 250 | benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr | 99.98 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 99.97 | |
| PRK07904 | 253 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK06057 | 255 | short chain dehydrogenase; Provisional | 99.97 | |
| TIGR02685 | 267 | pter_reduc_Leis pteridine reductase. Pteridine red | 99.97 | |
| PRK09186 | 256 | flagellin modification protein A; Provisional | 99.97 | |
| PRK07832 | 272 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK05875 | 276 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK05884 | 223 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK06947 | 248 | glucose-1-dehydrogenase; Provisional | 99.97 | |
| PRK08703 | 239 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK09072 | 263 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK06194 | 287 | hypothetical protein; Provisional | 99.97 | |
| PRK12935 | 247 | acetoacetyl-CoA reductase; Provisional | 99.97 | |
| PRK12936 | 245 | 3-ketoacyl-(acyl-carrier-protein) reductase NodG; | 99.97 | |
| PRK06123 | 248 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 99.97 | |
| PRK06198 | 260 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK06179 | 270 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK07069 | 251 | short chain dehydrogenase; Validated | 99.97 | |
| PRK08217 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.97 | |
| KOG1014 | 312 | consensus 17 beta-hydroxysteroid dehydrogenase typ | 99.97 | |
| PRK12824 | 245 | acetoacetyl-CoA reductase; Provisional | 99.97 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK08263 | 275 | short chain dehydrogenase; Provisional | 99.97 | |
| TIGR01829 | 242 | AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy | 99.97 | |
| PRK08251 | 248 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK05565 | 247 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.97 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK07666 | 239 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.97 | |
| TIGR02632 | 676 | RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc | 99.97 | |
| PRK05693 | 274 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK12745 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.97 | |
| PRK12746 | 254 | short chain dehydrogenase; Provisional | 99.97 | |
| COG1028 | 251 | FabG Dehydrogenases with different specificities ( | 99.97 | |
| PRK08945 | 247 | putative oxoacyl-(acyl carrier protein) reductase; | 99.97 | |
| PRK12827 | 249 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK07775 | 274 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK09134 | 258 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK06914 | 280 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 99.97 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK07060 | 245 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK09730 | 247 | putative NAD(P)-binding oxidoreductase; Provisiona | 99.96 | |
| PRK07102 | 243 | short chain dehydrogenase; Provisional | 99.96 | |
| PRK06924 | 251 | short chain dehydrogenase; Provisional | 99.96 | |
| KOG1209 | 289 | consensus 1-Acyl dihydroxyacetone phosphate reduct | 99.96 | |
| KOG1611 | 249 | consensus Predicted short chain-type dehydrogenase | 99.96 | |
| PRK08261 | 450 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.96 | |
| PRK07074 | 257 | short chain dehydrogenase; Provisional | 99.96 | |
| PRK05557 | 248 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.96 | |
| PRK06181 | 263 | short chain dehydrogenase; Provisional | 99.96 | |
| PRK07577 | 234 | short chain dehydrogenase; Provisional | 99.96 | |
| PRK06101 | 240 | short chain dehydrogenase; Provisional | 99.96 | |
| KOG1210 | 331 | consensus Predicted 3-ketosphinganine reductase [S | 99.96 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 99.96 | |
| PRK09009 | 235 | C factor cell-cell signaling protein; Provisional | 99.96 | |
| PRK06077 | 252 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.96 | |
| PRK06482 | 276 | short chain dehydrogenase; Provisional | 99.96 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.96 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 99.96 | |
| PF00106 | 167 | adh_short: short chain dehydrogenase alcohol dehyd | 99.96 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 99.96 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 99.96 | |
| PRK07023 | 243 | short chain dehydrogenase; Provisional | 99.96 | |
| PRK07041 | 230 | short chain dehydrogenase; Provisional | 99.96 | |
| PRK07578 | 199 | short chain dehydrogenase; Provisional | 99.96 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 99.96 | |
| TIGR01963 | 255 | PHB_DH 3-hydroxybutyrate dehydrogenase. This model | 99.95 | |
| KOG1199 | 260 | consensus Short-chain alcohol dehydrogenase/3-hydr | 99.95 | |
| PRK09135 | 249 | pteridine reductase; Provisional | 99.95 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 99.95 | |
| PRK12825 | 249 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.95 | |
| PRK08177 | 225 | short chain dehydrogenase; Provisional | 99.95 | |
| PRK09291 | 257 | short chain dehydrogenase; Provisional | 99.95 | |
| TIGR01830 | 239 | 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re | 99.95 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.95 | |
| PRK08264 | 238 | short chain dehydrogenase; Validated | 99.95 | |
| PRK08017 | 256 | oxidoreductase; Provisional | 99.94 | |
| PRK12367 | 245 | short chain dehydrogenase; Provisional | 99.94 | |
| COG0623 | 259 | FabI Enoyl-[acyl-carrier-protein] | 99.93 | |
| PRK06953 | 222 | short chain dehydrogenase; Provisional | 99.92 | |
| PRK12428 | 241 | 3-alpha-hydroxysteroid dehydrogenase; Provisional | 99.92 | |
| PRK08219 | 227 | short chain dehydrogenase; Provisional | 99.92 | |
| PRK07424 | 406 | bifunctional sterol desaturase/short chain dehydro | 99.91 | |
| KOG1204 | 253 | consensus Predicted dehydrogenase [Secondary metab | 99.9 | |
| TIGR02813 | 2582 | omega_3_PfaA polyketide-type polyunsaturated fatty | 99.89 | |
| smart00822 | 180 | PKS_KR This enzymatic domain is part of bacterial | 99.88 | |
| KOG1478 | 341 | consensus 3-keto sterol reductase [Lipid transport | 99.85 | |
| PF08659 | 181 | KR: KR domain; InterPro: IPR013968 This domain is | 99.83 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 99.81 | |
| TIGR03589 | 324 | PseB UDP-N-acetylglucosamine 4,6-dehydratase. This | 99.8 | |
| PRK06720 | 169 | hypothetical protein; Provisional | 99.79 | |
| PRK13656 | 398 | trans-2-enoyl-CoA reductase; Provisional | 99.79 | |
| TIGR02622 | 349 | CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member | 99.76 | |
| PLN02989 | 325 | cinnamyl-alcohol dehydrogenase family protein | 99.74 | |
| PLN02653 | 340 | GDP-mannose 4,6-dehydratase | 99.69 | |
| PLN02986 | 322 | cinnamyl-alcohol dehydrogenase family protein | 99.68 | |
| PLN02650 | 351 | dihydroflavonol-4-reductase | 99.65 | |
| PLN02583 | 297 | cinnamoyl-CoA reductase | 99.65 | |
| PLN02896 | 353 | cinnamyl-alcohol dehydrogenase | 99.65 | |
| PLN02572 | 442 | UDP-sulfoquinovose synthase | 99.62 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 99.62 | |
| PLN00198 | 338 | anthocyanidin reductase; Provisional | 99.62 | |
| PLN02240 | 352 | UDP-glucose 4-epimerase | 99.61 | |
| PRK10217 | 355 | dTDP-glucose 4,6-dehydratase; Provisional | 99.61 | |
| PLN02214 | 342 | cinnamoyl-CoA reductase | 99.6 | |
| TIGR01472 | 343 | gmd GDP-mannose 4,6-dehydratase. Excluded from thi | 99.59 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 99.57 | |
| TIGR01181 | 317 | dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This | 99.56 | |
| COG1086 | 588 | Predicted nucleoside-diphosphate sugar epimerases | 99.52 | |
| PRK10675 | 338 | UDP-galactose-4-epimerase; Provisional | 99.52 | |
| PRK10084 | 352 | dTDP-glucose 4,6 dehydratase; Provisional | 99.51 | |
| TIGR03466 | 328 | HpnA hopanoid-associated sugar epimerase. The sequ | 99.5 | |
| PRK15181 | 348 | Vi polysaccharide biosynthesis protein TviC; Provi | 99.5 | |
| KOG1502 | 327 | consensus Flavonol reductase/cinnamoyl-CoA reducta | 99.49 | |
| TIGR01179 | 328 | galE UDP-glucose-4-epimerase. This enzyme intercon | 99.49 | |
| PLN02686 | 367 | cinnamoyl-CoA reductase | 99.49 | |
| PF02719 | 293 | Polysacc_synt_2: Polysaccharide biosynthesis prote | 99.46 | |
| TIGR01746 | 367 | Thioester-redct thioester reductase domain. It has | 99.41 | |
| PLN02427 | 386 | UDP-apiose/xylose synthase | 99.38 | |
| COG1088 | 340 | RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope | 99.36 | |
| PF08643 | 299 | DUF1776: Fungal family of unknown function (DUF177 | 99.36 | |
| PLN02657 | 390 | 3,8-divinyl protochlorophyllide a 8-vinyl reductas | 99.35 | |
| PF01370 | 236 | Epimerase: NAD dependent epimerase/dehydratase fam | 99.33 | |
| PLN02695 | 370 | GDP-D-mannose-3',5'-epimerase | 99.31 | |
| PF01073 | 280 | 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso | 99.31 | |
| COG1087 | 329 | GalE UDP-glucose 4-epimerase [Cell envelope biogen | 99.29 | |
| PRK11150 | 308 | rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro | 99.28 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 99.27 | |
| TIGR02197 | 314 | heptose_epim ADP-L-glycero-D-manno-heptose-6-epime | 99.25 | |
| PRK11908 | 347 | NAD-dependent epimerase/dehydratase family protein | 99.24 | |
| PRK08125 | 660 | bifunctional UDP-glucuronic acid decarboxylase/UDP | 99.24 | |
| COG0451 | 314 | WcaG Nucleoside-diphosphate-sugar epimerases [Cell | 99.21 | |
| PLN02206 | 442 | UDP-glucuronate decarboxylase | 99.19 | |
| KOG1371 | 343 | consensus UDP-glucose 4-epimerase/UDP-sulfoquinovo | 99.18 | |
| TIGR01214 | 287 | rmlD dTDP-4-dehydrorhamnose reductase. This enzyme | 99.18 | |
| PLN02725 | 306 | GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas | 99.18 | |
| PRK09987 | 299 | dTDP-4-dehydrorhamnose reductase; Provisional | 99.18 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 99.15 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 99.14 | |
| PLN02166 | 436 | dTDP-glucose 4,6-dehydratase | 99.13 | |
| KOG1202 | 2376 | consensus Animal-type fatty acid synthase and rela | 99.09 | |
| PF07993 | 249 | NAD_binding_4: Male sterility protein; InterPro: I | 99.06 | |
| TIGR02114 | 227 | coaB_strep phosphopantothenate--cysteine ligase, s | 99.04 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 99.03 | |
| PLN02996 | 491 | fatty acyl-CoA reductase | 99.0 | |
| PRK05865 | 854 | hypothetical protein; Provisional | 99.0 | |
| PLN02778 | 298 | 3,5-epimerase/4-reductase | 98.9 | |
| COG3320 | 382 | Putative dehydrogenase domain of multifunctional n | 98.88 | |
| KOG4022 | 236 | consensus Dihydropteridine reductase DHPR/QDPR [Am | 98.88 | |
| PRK08309 | 177 | short chain dehydrogenase; Provisional | 98.87 | |
| PF04321 | 286 | RmlD_sub_bind: RmlD substrate binding domain; Inte | 98.8 | |
| PLN02503 | 605 | fatty acyl-CoA reductase 2 | 98.78 | |
| KOG1430 | 361 | consensus C-3 sterol dehydrogenase/3-beta-hydroxys | 98.74 | |
| COG1091 | 281 | RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo | 98.74 | |
| TIGR01777 | 292 | yfcH conserved hypothetical protein TIGR01777. Thi | 98.71 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 98.67 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 98.63 | |
| COG1089 | 345 | Gmd GDP-D-mannose dehydratase [Cell envelope bioge | 98.63 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 98.63 | |
| PRK05579 | 399 | bifunctional phosphopantothenoylcysteine decarboxy | 98.56 | |
| PRK08261 | 450 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 98.55 | |
| COG4982 | 866 | 3-oxoacyl-[acyl-carrier protein] | 98.45 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 98.4 | |
| PLN00016 | 378 | RNA-binding protein; Provisional | 98.39 | |
| PRK06732 | 229 | phosphopantothenate--cysteine ligase; Validated | 98.34 | |
| PRK12320 | 699 | hypothetical protein; Provisional | 98.31 | |
| TIGR00521 | 390 | coaBC_dfp phosphopantothenoylcysteine decarboxylas | 98.3 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 98.26 | |
| COG1090 | 297 | Predicted nucleoside-diphosphate sugar epimerase [ | 98.23 | |
| KOG0747 | 331 | consensus Putative NAD+-dependent epimerases [Carb | 98.2 | |
| KOG1221 | 467 | consensus Acyl-CoA reductase [Lipid transport and | 98.18 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 98.13 | |
| KOG1429 | 350 | consensus dTDP-glucose 4-6-dehydratase/UDP-glucuro | 98.08 | |
| COG0702 | 275 | Predicted nucleoside-diphosphate-sugar epimerases | 97.78 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.76 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 97.71 | |
| KOG1203 | 411 | consensus Predicted dehydrogenase [Carbohydrate tr | 97.69 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 97.63 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 97.63 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 97.62 | |
| KOG2865 | 391 | consensus NADH:ubiquinone oxidoreductase, NDUFA9/3 | 97.59 | |
| PLN00106 | 323 | malate dehydrogenase | 97.58 | |
| PRK09620 | 229 | hypothetical protein; Provisional | 97.54 | |
| cd08253 | 325 | zeta_crystallin Zeta-crystallin with NADP-dependen | 97.35 | |
| KOG2733 | 423 | consensus Uncharacterized membrane protein [Functi | 97.34 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 97.27 | |
| KOG1372 | 376 | consensus GDP-mannose 4,6 dehydratase [Carbohydrat | 97.23 | |
| KOG2774 | 366 | consensus NAD dependent epimerase [General functio | 97.2 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 97.14 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.11 | |
| KOG4039 | 238 | consensus Serine/threonine kinase TIP30/CC3 [Signa | 97.08 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 97.04 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 97.0 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 96.97 | |
| PF04127 | 185 | DFP: DNA / pantothenate metabolism flavoprotein; I | 96.89 | |
| KOG1431 | 315 | consensus GDP-L-fucose synthetase [Carbohydrate tr | 96.78 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 96.71 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 96.68 | |
| PRK06849 | 389 | hypothetical protein; Provisional | 96.6 | |
| TIGR02813 | 2582 | omega_3_PfaA polyketide-type polyunsaturated fatty | 96.6 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 96.46 | |
| cd08266 | 342 | Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam | 96.42 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 96.42 | |
| PLN02520 | 529 | bifunctional 3-dehydroquinate dehydratase/shikimat | 96.38 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 96.31 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 96.29 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 96.26 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 96.26 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 96.24 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 96.2 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 96.2 | |
| cd08259 | 332 | Zn_ADH5 Alcohol dehydrogenases of the MDR family. | 96.13 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 96.13 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 96.12 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 96.11 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 96.08 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 96.05 | |
| cd05276 | 323 | p53_inducible_oxidoreductase PIG3 p53-inducible qu | 95.96 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 95.93 | |
| PRK14027 | 283 | quinate/shikimate dehydrogenase; Provisional | 95.87 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 95.82 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 95.73 | |
| COG3268 | 382 | Uncharacterized conserved protein [Function unknow | 95.69 | |
| PRK13982 | 475 | bifunctional SbtC-like/phosphopantothenoylcysteine | 95.68 | |
| COG0169 | 283 | AroE Shikimate 5-dehydrogenase [Amino acid transpo | 95.65 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 95.59 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 95.52 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 95.51 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 95.48 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 95.42 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 95.42 | |
| PF12242 | 78 | Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2 | 95.36 | |
| TIGR00715 | 256 | precor6x_red precorrin-6x reductase. This enzyme w | 95.34 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 95.32 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 95.25 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 95.24 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 95.23 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 95.22 | |
| KOG1198 | 347 | consensus Zinc-binding oxidoreductase [Energy prod | 95.18 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 95.14 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 95.05 | |
| TIGR02824 | 325 | quinone_pig3 putative NAD(P)H quinone oxidoreducta | 95.04 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 95.02 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 94.95 | |
| PRK09310 | 477 | aroDE bifunctional 3-dehydroquinate dehydratase/sh | 94.93 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 94.89 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 94.77 | |
| cd08294 | 329 | leukotriene_B4_DH_like 13-PGR is a bifunctional en | 94.77 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 94.77 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 94.76 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 94.67 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 94.64 | |
| cd08268 | 328 | MDR2 Medium chain dehydrogenases/reductase (MDR)/z | 94.62 | |
| cd05288 | 329 | PGDH Prostaglandin dehydrogenases. Prostaglandins | 94.61 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 94.61 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 94.59 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 94.57 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 94.55 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 94.46 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 94.35 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 94.29 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 94.28 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 94.21 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 94.17 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 94.16 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 94.13 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 94.11 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 93.95 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 93.94 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 93.93 | |
| PRK08223 | 287 | hypothetical protein; Validated | 93.93 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 93.9 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 93.82 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 93.81 | |
| TIGR02818 | 368 | adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr | 93.8 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 93.78 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 93.74 | |
| cd08244 | 324 | MDR_enoyl_red Possible enoyl reductase. Member ide | 93.74 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 93.69 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.65 | |
| PLN02602 | 350 | lactate dehydrogenase | 93.61 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 93.49 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 93.49 | |
| cd08300 | 368 | alcohol_DH_class_III class III alcohol dehydrogena | 93.44 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 93.43 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 93.43 | |
| PLN02740 | 381 | Alcohol dehydrogenase-like | 93.42 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 93.3 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 93.29 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 93.17 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 93.11 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 93.07 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 93.02 | |
| PRK04308 | 445 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 92.99 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 92.86 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 92.81 | |
| cd01489 | 312 | Uba2_SUMO Ubiquitin activating enzyme (E1) subunit | 92.8 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 92.73 | |
| PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 92.72 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 92.67 | |
| cd08292 | 324 | ETR_like_2 2-enoyl thioester reductase (ETR) like | 92.66 | |
| cd08301 | 369 | alcohol_DH_plants Plant alcohol dehydrogenase. NAD | 92.46 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 92.45 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 92.45 | |
| PLN02178 | 375 | cinnamyl-alcohol dehydrogenase | 92.43 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 92.43 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 92.38 | |
| cd08250 | 329 | Mgc45594_like Mgc45594 gene product and other MDR | 92.36 | |
| cd08243 | 320 | quinone_oxidoreductase_like_1 Quinone oxidoreducta | 92.33 | |
| PRK13771 | 334 | putative alcohol dehydrogenase; Provisional | 92.26 | |
| cd08291 | 324 | ETR_like_1 2-enoyl thioester reductase (ETR) like | 92.25 | |
| cd08241 | 323 | QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t | 92.22 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 92.2 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 92.08 | |
| PTZ00354 | 334 | alcohol dehydrogenase; Provisional | 92.05 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 92.04 | |
| cd05286 | 320 | QOR2 Quinone oxidoreductase (QOR). Quinone oxidore | 92.04 | |
| PRK12550 | 272 | shikimate 5-dehydrogenase; Reviewed | 92.04 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 92.02 | |
| cd05282 | 323 | ETR_like 2-enoyl thioester reductase-like. 2-enoyl | 91.94 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 91.92 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 91.91 | |
| cd08238 | 410 | sorbose_phosphate_red L-sorbose-1-phosphate reduct | 91.91 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 91.85 | |
| cd01076 | 227 | NAD_bind_1_Glu_DH NAD(P) binding domain of glutama | 91.83 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 91.8 | |
| cd08233 | 351 | butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog | 91.75 | |
| cd08246 | 393 | crotonyl_coA_red crotonyl-CoA reductase. Crotonyl- | 91.6 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 91.58 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 91.54 | |
| COG2130 | 340 | Putative NADP-dependent oxidoreductases [General f | 91.54 | |
| cd08297 | 341 | CAD3 Cinnamyl alcohol dehydrogenases (CAD). These | 91.5 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 91.48 | |
| cd01484 | 234 | E1-2_like Ubiquitin activating enzyme (E1), repeat | 91.37 | |
| cd08248 | 350 | RTN4I1 Human Reticulon 4 Interacting Protein 1. Hu | 91.32 | |
| TIGR01751 | 398 | crot-CoA-red crotonyl-CoA reductase. The enzyme mo | 91.21 | |
| cd08231 | 361 | MDR_TM0436_like Hypothetical enzyme TM0436 resembl | 91.14 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 91.12 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 91.1 | |
| cd08277 | 365 | liver_alcohol_DH_like Liver alcohol dehydrogenase. | 91.09 | |
| PRK14851 | 679 | hypothetical protein; Provisional | 90.99 | |
| PLN02827 | 378 | Alcohol dehydrogenase-like | 90.95 | |
| cd08290 | 341 | ETR 2-enoyl thioester reductase (ETR). 2-enoyl thi | 90.91 | |
| PRK07877 | 722 | hypothetical protein; Provisional | 90.82 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 90.78 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 90.76 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 90.73 | |
| cd08299 | 373 | alcohol_DH_class_I_II_IV class I, II, IV alcohol d | 90.71 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 90.7 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 90.66 | |
| PLN02928 | 347 | oxidoreductase family protein | 90.59 | |
| cd08296 | 333 | CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci | 90.49 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 90.49 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 90.38 | |
| TIGR01771 | 299 | L-LDH-NAD L-lactate dehydrogenase. This model repr | 90.36 | |
| PRK14191 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 90.34 | |
| PRK07878 | 392 | molybdopterin biosynthesis-like protein MoeZ; Vali | 90.31 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 90.29 | |
| TIGR01381 | 664 | E1_like_apg7 E1-like protein-activating enzyme Gsa | 90.29 | |
| PRK07411 | 390 | hypothetical protein; Validated | 90.27 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 90.23 | |
| COG3007 | 398 | Uncharacterized paraquat-inducible protein B [Func | 90.01 | |
| PF01262 | 168 | AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal | 89.89 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 89.88 | |
| PRK14030 | 445 | glutamate dehydrogenase; Provisional | 89.84 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 89.66 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 89.65 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 89.63 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 89.63 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 89.62 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 89.55 | |
| cd08289 | 326 | MDR_yhfp_like Yhfp putative quinone oxidoreductase | 89.4 |
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=327.43 Aligned_cols=224 Identities=25% Similarity=0.400 Sum_probs=201.3
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
.+.++++||||||+|||+++|++|+++|++|++++|++++++++.+++++. .+.++.++++|++
T Consensus 3 ~~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~----------------~~v~v~vi~~DLs 66 (265)
T COG0300 3 PMKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDK----------------TGVEVEVIPADLS 66 (265)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHh----------------hCceEEEEECcCC
Confidence 567899999999999999999999999999999999999999999999875 4578999999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
+++++.++.+++.+..+.||+||||||... ++++.+.+.++.++++++|+.+...|+++++|.|.++ +.|+||||+|.
T Consensus 67 ~~~~~~~l~~~l~~~~~~IdvLVNNAG~g~-~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~-~~G~IiNI~S~ 144 (265)
T COG0300 67 DPEALERLEDELKERGGPIDVLVNNAGFGT-FGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVER-GAGHIINIGSA 144 (265)
T ss_pred ChhHHHHHHHHHHhcCCcccEEEECCCcCC-ccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCceEEEEech
Confidence 999999999999999899999999999998 7899999999999999999999999999999999998 78999999998
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhccc
Q 010380 334 GSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPR 413 (512)
Q Consensus 334 ~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~r 413 (512)
++..+.|..+.|++||+++.+|+++|+.|+.++||+|.+|+||+|.|+++.................+|+++|+..+..
T Consensus 145 -ag~~p~p~~avY~ATKa~v~~fSeaL~~EL~~~gV~V~~v~PG~~~T~f~~~~~~~~~~~~~~~~~~~~~~va~~~~~~ 223 (265)
T COG0300 145 -AGLIPTPYMAVYSATKAFVLSFSEALREELKGTGVKVTAVCPGPTRTEFFDAKGSDVYLLSPGELVLSPEDVAEAALKA 223 (265)
T ss_pred -hhcCCCcchHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEecCccccccccccccccccccchhhccCHHHHHHHHHHH
Confidence 7899999999999999999999999999999999999999999999999962111111111233445899999988866
Q ss_pred ccc
Q 010380 414 IRV 416 (512)
Q Consensus 414 ~~~ 416 (512)
+..
T Consensus 224 l~~ 226 (265)
T COG0300 224 LEK 226 (265)
T ss_pred Hhc
Confidence 554
|
|
| >COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=318.81 Aligned_cols=224 Identities=29% Similarity=0.403 Sum_probs=194.7
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
.+++|+++|||||+|||.++|++|++.|++|++++|+.++++++.+++.+ .++.++..|++
T Consensus 3 ~~~~kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~drL~~la~~~~~-------------------~~~~~~~~DVt 63 (246)
T COG4221 3 TLKGKVALITGASSGIGEATARALAEAGAKVVLAARREERLEALADEIGA-------------------GAALALALDVT 63 (246)
T ss_pred CCCCcEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHhhcc-------------------CceEEEeeccC
Confidence 35789999999999999999999999999999999999999998888742 47889999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
|.++++++++.+.++|++||+||||||...+ .++.+.+.|+|++++++|+.|.++.+++++|.|.++ +.|+|||+||.
T Consensus 64 D~~~~~~~i~~~~~~~g~iDiLvNNAGl~~g-~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r-~~G~IiN~~Si 141 (246)
T COG4221 64 DRAAVEAAIEALPEEFGRIDILVNNAGLALG-DPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVER-KSGHIINLGSI 141 (246)
T ss_pred CHHHHHHHHHHHHHhhCcccEEEecCCCCcC-ChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhc-CCceEEEeccc
Confidence 9999999999999999999999999999984 999999999999999999999999999999999998 67899999999
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhh-h----hhhhhcCCHHHHHH
Q 010380 334 GSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNK-Q----MFNIICELPETVAR 408 (512)
Q Consensus 334 ~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~-~----~~~~~~~~pe~vA~ 408 (512)
++..++|+.+.|+++|+++.+|++.|+.|+.+++|||.+|+||.|.|..+.......+. . ........|+++|+
T Consensus 142 -AG~~~y~~~~vY~ATK~aV~~fs~~LR~e~~g~~IRVt~I~PG~v~~~~~s~v~~~g~~~~~~~~y~~~~~l~p~dIA~ 220 (246)
T COG4221 142 -AGRYPYPGGAVYGATKAAVRAFSLGLRQELAGTGIRVTVISPGLVETTEFSTVRFEGDDERADKVYKGGTALTPEDIAE 220 (246)
T ss_pred -cccccCCCCccchhhHHHHHHHHHHHHHHhcCCCeeEEEecCceecceecccccCCchhhhHHHHhccCCCCCHHHHHH
Confidence 78999999999999999999999999999999999999999999987765443322111 1 11222345677776
Q ss_pred Hhccccccchh
Q 010380 409 TLVPRIRVVKG 419 (512)
Q Consensus 409 ~~l~r~~~~~~ 419 (512)
.++..+..|+.
T Consensus 221 ~V~~~~~~P~~ 231 (246)
T COG4221 221 AVLFAATQPQH 231 (246)
T ss_pred HHHHHHhCCCc
Confidence 66665555554
|
|
| >KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=306.36 Aligned_cols=243 Identities=21% Similarity=0.304 Sum_probs=212.0
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
++..|+++||||++|||+++++.|+++|++|++.+++...++++...|.. + .+-..+.||++
T Consensus 11 r~~sk~~~vtGg~sGIGrAia~~la~~Garv~v~dl~~~~A~ata~~L~g-----------------~-~~h~aF~~DVS 72 (256)
T KOG1200|consen 11 RLMSKVAAVTGGSSGIGRAIAQLLAKKGARVAVADLDSAAAEATAGDLGG-----------------Y-GDHSAFSCDVS 72 (256)
T ss_pred HHhcceeEEecCCchHHHHHHHHHHhcCcEEEEeecchhhHHHHHhhcCC-----------------C-CccceeeeccC
Confidence 45678999999999999999999999999999999998887777766532 1 34556899999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-CCCCeEEeecC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQ-PKGGHIFNMDG 332 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~-~~~g~IV~vSS 332 (512)
++++++..+++..+.+|++++||||||+.. +..+..+..++|+.++.+|+.|.|+++|++.+.|... .++++|||+||
T Consensus 73 ~a~~v~~~l~e~~k~~g~psvlVncAGItr-D~~Llrmkq~qwd~vi~vNL~gvfl~tqaa~r~~~~~~~~~~sIiNvsS 151 (256)
T KOG1200|consen 73 KAHDVQNTLEEMEKSLGTPSVLVNCAGITR-DGLLLRMKQEQWDSVIAVNLTGVFLVTQAAVRAMVMNQQQGLSIINVSS 151 (256)
T ss_pred cHHHHHHHHHHHHHhcCCCcEEEEcCcccc-ccceeeccHHHHHHHHHhhchhhHHHHHHHHHHHHHhcCCCceEEeehh
Confidence 999999999999999999999999999998 7888999999999999999999999999999985443 34569999999
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhcc
Q 010380 333 AGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVP 412 (512)
Q Consensus 333 ~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~ 412 (512)
+ .+..++-++..|++||+++.+|+++.++|++.++||||.|+||+|.|||.....+.... +.+.-.+++
T Consensus 152 I-VGkiGN~GQtnYAAsK~GvIgftktaArEla~knIrvN~VlPGFI~tpMT~~mp~~v~~----------ki~~~iPmg 220 (256)
T KOG1200|consen 152 I-VGKIGNFGQTNYAASKGGVIGFTKTAARELARKNIRVNVVLPGFIATPMTEAMPPKVLD----------KILGMIPMG 220 (256)
T ss_pred h-hcccccccchhhhhhcCceeeeeHHHHHHHhhcCceEeEeccccccChhhhhcCHHHHH----------HHHccCCcc
Confidence 8 78999999999999999999999999999999999999999999999998654332211 222335688
Q ss_pred ccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 413 RIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 413 r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
|++.+||+++.+.||+||...+.+++.+-.+|++
T Consensus 221 r~G~~EevA~~V~fLAS~~ssYiTG~t~evtGGl 254 (256)
T KOG1200|consen 221 RLGEAEEVANLVLFLASDASSYITGTTLEVTGGL 254 (256)
T ss_pred ccCCHHHHHHHHHHHhccccccccceeEEEeccc
Confidence 9999999999999999999998888877776664
|
|
| >PRK08339 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-39 Score=322.02 Aligned_cols=251 Identities=18% Similarity=0.204 Sum_probs=210.3
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
+++++|+++||||++|||+++|++|+++|++|++++|+.++++++.+++.+. .+.++.++.+|+
T Consensus 4 ~~l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~----------------~~~~~~~~~~Dv 67 (263)
T PRK08339 4 IDLSGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSE----------------SNVDVSYIVADL 67 (263)
T ss_pred cCCCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhh----------------cCCceEEEEecC
Confidence 4578999999999999999999999999999999999998888777776542 235688899999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|+++++++++++. ++|++|+||||||... ..++.+.+.++|++++++|+.++++++++++|.|+++ +.|+||++||
T Consensus 68 ~~~~~i~~~~~~~~-~~g~iD~lv~nag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~-~~g~Ii~isS 144 (263)
T PRK08339 68 TKREDLERTVKELK-NIGEPDIFFFSTGGPK-PGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERK-GFGRIIYSTS 144 (263)
T ss_pred CCHHHHHHHHHHHH-hhCCCcEEEECCCCCC-CCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCCEEEEEcC
Confidence 99999999999985 6899999999999866 5778899999999999999999999999999999876 5689999999
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHH-----HHH
Q 010380 333 AGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPE-----TVA 407 (512)
Q Consensus 333 ~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe-----~vA 407 (512)
. ++..+.++...|+++|+|+++|+++|+.|++++||+||+|+||+|+|+|.......... .....++ ...
T Consensus 145 ~-~~~~~~~~~~~y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 219 (263)
T PRK08339 145 V-AIKEPIPNIALSNVVRISMAGLVRTLAKELGPKGITVNGIMPGIIRTDRVIQLAQDRAK----REGKSVEEALQEYAK 219 (263)
T ss_pred c-cccCCCCcchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCccHHHHHHHHhhhh----ccCCCHHHHHHHHhc
Confidence 8 56778888999999999999999999999999999999999999999986321100000 0000111 122
Q ss_pred HHhccccccchhhhhhhhhcCChHHHHHHHHHHhccCccc
Q 010380 408 RTLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWF 447 (512)
Q Consensus 408 ~~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~ 447 (512)
..+++++..|+|++.++.||+++...+.++..+..||++.
T Consensus 220 ~~p~~r~~~p~dva~~v~fL~s~~~~~itG~~~~vdgG~~ 259 (263)
T PRK08339 220 PIPLGRLGEPEEIGYLVAFLASDLGSYINGAMIPVDGGRL 259 (263)
T ss_pred cCCcccCcCHHHHHHHHHHHhcchhcCccCceEEECCCcc
Confidence 3467889999999999999999988777887777777763
|
|
| >KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-39 Score=320.86 Aligned_cols=195 Identities=26% Similarity=0.432 Sum_probs=181.5
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
.++.||+|+|||||+|||.++|++|+++|++++++.|+.++++...+++++..+. .++++++||+
T Consensus 8 e~~~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~---------------~~v~~~~~Dv 72 (282)
T KOG1205|consen 8 ERLAGKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSL---------------EKVLVLQLDV 72 (282)
T ss_pred HHhCCCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCc---------------CccEEEeCcc
Confidence 4689999999999999999999999999999999999999999998998875331 1699999999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|+++++++++++..++|++|+||||||+.. .....+.+.+++..+|++|++|+++++|+++|+|++++ .|+||++||
T Consensus 73 s~~~~~~~~~~~~~~~fg~vDvLVNNAG~~~-~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~-~GhIVvisS 150 (282)
T KOG1205|consen 73 SDEESVKKFVEWAIRHFGRVDVLVNNAGISL-VGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRN-DGHIVVISS 150 (282)
T ss_pred CCHHHHHHHHHHHHHhcCCCCEEEecCcccc-ccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcC-CCeEEEEec
Confidence 9999999999999999999999999999998 78888999999999999999999999999999999984 799999999
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCC--eEEEEEeCCcccCCcccC
Q 010380 333 AGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSK--VGVHTASPGMVLTDLLLS 386 (512)
Q Consensus 333 ~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~G--IrVn~V~PG~V~T~~~~~ 386 (512)
+ ++..+.|..+.|+|||+|+.+|.++|+.|+.+.+ |++ +|+||+|+|++...
T Consensus 151 i-aG~~~~P~~~~Y~ASK~Al~~f~etLR~El~~~~~~i~i-~V~PG~V~Te~~~~ 204 (282)
T KOG1205|consen 151 I-AGKMPLPFRSIYSASKHALEGFFETLRQELIPLGTIIII-LVSPGPIETEFTGK 204 (282)
T ss_pred c-ccccCCCcccccchHHHHHHHHHHHHHHHhhccCceEEE-EEecCceeecccch
Confidence 9 7999999999999999999999999999999877 666 99999999998754
|
|
| >PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-39 Score=316.29 Aligned_cols=245 Identities=21% Similarity=0.281 Sum_probs=206.8
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
+++++|+++||||++|||+++|++|+++|++|++++|+.. ++..+++++ .+.++.++.+|+
T Consensus 4 ~~l~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~~--~~~~~~~~~-----------------~~~~~~~~~~Dl 64 (251)
T PRK12481 4 FDLNGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAEA--PETQAQVEA-----------------LGRKFHFITADL 64 (251)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCchH--HHHHHHHHH-----------------cCCeEEEEEeCC
Confidence 4578999999999999999999999999999999988643 233333332 345788999999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|+++++++++++.+.+|++|+||||||+.. ..++.+.+.++|++++++|+.+++.++++++|.|.+++.+|+||++||
T Consensus 65 ~~~~~~~~~~~~~~~~~g~iD~lv~~ag~~~-~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~~g~ii~isS 143 (251)
T PRK12481 65 IQQKDIDSIVSQAVEVMGHIDILINNAGIIR-RQDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVKQGNGGKIINIAS 143 (251)
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCcCC-CCCcccCCHHHHHHHheeCcHHHHHHHHHHHHHHHHcCCCCEEEEeCC
Confidence 9999999999999999999999999999876 577888999999999999999999999999999987644689999999
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhcc
Q 010380 333 AGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVP 412 (512)
Q Consensus 333 ~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~ 412 (512)
. ++..+.++...|++||+|+++|+++++.|++++||+||+|+||+|+|++....... ... ..+...+.+.+
T Consensus 144 ~-~~~~~~~~~~~Y~asK~a~~~l~~~la~e~~~~girvn~v~PG~v~t~~~~~~~~~--~~~------~~~~~~~~p~~ 214 (251)
T PRK12481 144 M-LSFQGGIRVPSYTASKSAVMGLTRALATELSQYNINVNAIAPGYMATDNTAALRAD--TAR------NEAILERIPAS 214 (251)
T ss_pred h-hhcCCCCCCcchHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCCccCchhhcccC--hHH------HHHHHhcCCCC
Confidence 7 56677788899999999999999999999999999999999999999986432110 000 11223345678
Q ss_pred ccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 413 RIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 413 r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
++..|+|+++++.||+++...+.++..+..||++
T Consensus 215 ~~~~peeva~~~~~L~s~~~~~~~G~~i~vdgg~ 248 (251)
T PRK12481 215 RWGTPDDLAGPAIFLSSSASDYVTGYTLAVDGGW 248 (251)
T ss_pred CCcCHHHHHHHHHHHhCccccCcCCceEEECCCE
Confidence 8899999999999999988877788877777775
|
|
| >KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-38 Score=309.97 Aligned_cols=222 Identities=24% Similarity=0.351 Sum_probs=200.8
Q ss_pred ccCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEc
Q 010380 171 EHCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIAC 250 (512)
Q Consensus 171 ~~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~ 250 (512)
+..+.+|++||||||++|||+++|.+||++|+++++.+.+.+..+++.+++++ . ++++.+.|
T Consensus 32 ~~k~v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~-----------------~-g~~~~y~c 93 (300)
T KOG1201|consen 32 PLKSVSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRK-----------------I-GEAKAYTC 93 (300)
T ss_pred chhhccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHh-----------------c-CceeEEEe
Confidence 66789999999999999999999999999999999999999999999999876 2 37999999
Q ss_pred cCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEee
Q 010380 251 DVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNM 330 (512)
Q Consensus 251 Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~v 330 (512)
|++|.+++.+.++++++++|.+|+||||||+.. ..++.+.++|++++++++|+.|+|+.+|+++|.|.+. +.|+||++
T Consensus 94 dis~~eei~~~a~~Vk~e~G~V~ILVNNAGI~~-~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~-~~GHIV~I 171 (300)
T KOG1201|consen 94 DISDREEIYRLAKKVKKEVGDVDILVNNAGIVT-GKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLEN-NNGHIVTI 171 (300)
T ss_pred cCCCHHHHHHHHHHHHHhcCCceEEEecccccc-CCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhc-CCceEEEe
Confidence 999999999999999999999999999999998 6889999999999999999999999999999999987 68999999
Q ss_pred cCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhC---CCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHH
Q 010380 331 DGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESK---RSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVA 407 (512)
Q Consensus 331 SS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~---~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA 407 (512)
+|+ ++..+.++...|++||+|+.+|.++|..|+. .+||+..+|+|++++|+|... ......+++. .+|+++|
T Consensus 172 aS~-aG~~g~~gl~~YcaSK~a~vGfhesL~~EL~~~~~~~IktTlv~P~~i~Tgmf~~--~~~~~~l~P~--L~p~~va 246 (300)
T KOG1201|consen 172 ASV-AGLFGPAGLADYCASKFAAVGFHESLSMELRALGKDGIKTTLVCPYFINTGMFDG--ATPFPTLAPL--LEPEYVA 246 (300)
T ss_pred hhh-hcccCCccchhhhhhHHHHHHHHHHHHHHHHhcCCCCeeEEEEeeeeccccccCC--CCCCccccCC--CCHHHHH
Confidence 998 7999999999999999999999999999986 467999999999999999875 2222233333 3799999
Q ss_pred HHhccccccc
Q 010380 408 RTLVPRIRVV 417 (512)
Q Consensus 408 ~~~l~r~~~~ 417 (512)
+.++..+.+-
T Consensus 247 ~~Iv~ai~~n 256 (300)
T KOG1201|consen 247 KRIVEAILTN 256 (300)
T ss_pred HHHHHHHHcC
Confidence 9998776643
|
|
| >PRK06079 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=315.51 Aligned_cols=241 Identities=15% Similarity=0.143 Sum_probs=200.4
Q ss_pred CCCCCEEEEECCC--ChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEcc
Q 010380 174 KAGPRNVVITGST--RGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACD 251 (512)
Q Consensus 174 ~l~gk~vLVTGas--sGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~D 251 (512)
++++|+++||||+ +|||+++|++|+++|++|++++|+. +.++..+++. +.++.+++||
T Consensus 4 ~l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~-~~~~~~~~~~-------------------~~~~~~~~~D 63 (252)
T PRK06079 4 ILSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQND-RMKKSLQKLV-------------------DEEDLLVECD 63 (252)
T ss_pred ccCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCch-HHHHHHHhhc-------------------cCceeEEeCC
Confidence 4689999999999 8999999999999999999999983 3333333321 2357789999
Q ss_pred CCChhhHHHHHHHHHHHcCCCcccccccccCCC---CCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEE
Q 010380 252 VCEPADVQKLSNFAVNEFGSIDIWINNAGTNKG---FKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIF 328 (512)
Q Consensus 252 ltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~---~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV 328 (512)
++|+++++++++++.+++|++|+||||||+..+ ..++.+.+.++|++++++|+.++++++++++|+|.+ +|+||
T Consensus 64 l~~~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~l~~~~~~~~~~---~g~Iv 140 (252)
T PRK06079 64 VASDESIERAFATIKERVGKIDGIVHAIAYAKKEELGGNVTDTSRDGYALAQDISAYSLIAVAKYARPLLNP---GASIV 140 (252)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCEEEEcccccccccccCCcccCCHHHHHHHhCcccHHHHHHHHHHHHhccc---CceEE
Confidence 999999999999999999999999999998642 257788999999999999999999999999999963 48999
Q ss_pred eecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHH
Q 010380 329 NMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVAR 408 (512)
Q Consensus 329 ~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~ 408 (512)
++||. ++..+.|++..|++||+|+++|+++|+.|++++||+||+|+||+|+|+|...... .+... .+...+
T Consensus 141 ~iss~-~~~~~~~~~~~Y~asKaal~~l~~~la~el~~~gI~vn~i~PG~v~T~~~~~~~~--~~~~~------~~~~~~ 211 (252)
T PRK06079 141 TLTYF-GSERAIPNYNVMGIAKAALESSVRYLARDLGKKGIRVNAISAGAVKTLAVTGIKG--HKDLL------KESDSR 211 (252)
T ss_pred EEecc-CccccCCcchhhHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccccccccCCC--hHHHH------HHHHhc
Confidence 99987 5667788899999999999999999999999999999999999999998643211 01110 112234
Q ss_pred HhccccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 409 TLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 409 ~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
.+.+++..|+|+++++.||+++...+.++..+..||++
T Consensus 212 ~p~~r~~~pedva~~~~~l~s~~~~~itG~~i~vdgg~ 249 (252)
T PRK06079 212 TVDGVGVTIEEVGNTAAFLLSDLSTGVTGDIIYVDKGV 249 (252)
T ss_pred CcccCCCCHHHHHHHHHHHhCcccccccccEEEeCCce
Confidence 56788999999999999999998877777777777664
|
|
| >PRK08415 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=318.37 Aligned_cols=245 Identities=13% Similarity=0.162 Sum_probs=202.2
Q ss_pred CCCCCEEEEECCC--ChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEcc
Q 010380 174 KAGPRNVVITGST--RGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACD 251 (512)
Q Consensus 174 ~l~gk~vLVTGas--sGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~D 251 (512)
.+++|++|||||+ +|||+++|+.|+++|++|++++|+.+ .++..+++.+. .+.. .+++||
T Consensus 2 ~l~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~-~~~~~~~~~~~----------------~~~~-~~~~~D 63 (274)
T PRK08415 2 IMKGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEA-LKKRVEPIAQE----------------LGSD-YVYELD 63 (274)
T ss_pred ccCCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHH-HHHHHHHHHHh----------------cCCc-eEEEec
Confidence 4678999999997 89999999999999999999999853 23333444332 1223 568999
Q ss_pred CCChhhHHHHHHHHHHHcCCCcccccccccCCC---CCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEE
Q 010380 252 VCEPADVQKLSNFAVNEFGSIDIWINNAGTNKG---FKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIF 328 (512)
Q Consensus 252 ltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~---~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV 328 (512)
++|+++++++++++.+++|++|+||||||+..+ ..++.+.+.++|++++++|+.++++++++++|.|.+ +|+||
T Consensus 64 v~d~~~v~~~~~~i~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~---~g~Iv 140 (274)
T PRK08415 64 VSKPEHFKSLAESLKKDLGKIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLND---GASVL 140 (274)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhcc---CCcEE
Confidence 999999999999999999999999999998642 256788999999999999999999999999999964 47999
Q ss_pred eecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHH
Q 010380 329 NMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVAR 408 (512)
Q Consensus 329 ~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~ 408 (512)
++||. ++..+.|++..|++||+|+.+|+++|+.|++++||+||+|+||+|+|++....... .... ......
T Consensus 141 ~isS~-~~~~~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~~~~--~~~~------~~~~~~ 211 (274)
T PRK08415 141 TLSYL-GGVKYVPHYNVMGVAKAALESSVRYLAVDLGKKGIRVNAISAGPIKTLAASGIGDF--RMIL------KWNEIN 211 (274)
T ss_pred EEecC-CCccCCCcchhhhhHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccHHHhccchh--hHHh------hhhhhh
Confidence 99987 56777888999999999999999999999999999999999999999875321110 0000 011234
Q ss_pred HhccccccchhhhhhhhhcCChHHHHHHHHHHhccCcccc
Q 010380 409 TLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWFD 448 (512)
Q Consensus 409 ~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~~ 448 (512)
.+++++..|+|++.++.||+++...+.++..+..+|++..
T Consensus 212 ~pl~r~~~pedva~~v~fL~s~~~~~itG~~i~vdGG~~~ 251 (274)
T PRK08415 212 APLKKNVSIEEVGNSGMYLLSDLSSGVTGEIHYVDAGYNI 251 (274)
T ss_pred CchhccCCHHHHHHHHHHHhhhhhhcccccEEEEcCcccc
Confidence 5678889999999999999999888888988888888754
|
|
| >PRK06505 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-38 Score=316.08 Aligned_cols=244 Identities=16% Similarity=0.171 Sum_probs=200.2
Q ss_pred CCCCCEEEEECCCC--hHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEcc
Q 010380 174 KAGPRNVVITGSTR--GLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACD 251 (512)
Q Consensus 174 ~l~gk~vLVTGass--GIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~D 251 (512)
.+++|++|||||++ |||+++|++|+++|++|++++|+.+..+. .+++.+. .+. ..+++||
T Consensus 4 ~l~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~-~~~~~~~----------------~g~-~~~~~~D 65 (271)
T PRK06505 4 LMQGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKR-VKPLAES----------------LGS-DFVLPCD 65 (271)
T ss_pred ccCCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHH-HHHHHHh----------------cCC-ceEEeCC
Confidence 36899999999996 99999999999999999999998543322 3333221 122 2468999
Q ss_pred CCChhhHHHHHHHHHHHcCCCcccccccccCCC---CCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEE
Q 010380 252 VCEPADVQKLSNFAVNEFGSIDIWINNAGTNKG---FKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIF 328 (512)
Q Consensus 252 ltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~---~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV 328 (512)
++|+++++++++++.+++|+||+||||||+... ..++.+.+.++|++++++|+.++++++++++|+|.+ +|+||
T Consensus 66 v~d~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~m~~---~G~Iv 142 (271)
T PRK06505 66 VEDIASVDAVFEALEKKWGKLDFVVHAIGFSDKNELKGRYADTTRENFSRTMVISCFSFTEIAKRAAKLMPD---GGSML 142 (271)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCEEEECCccCCCccccCChhhcCHHHHHHHHhhhhhhHHHHHHHHHHhhcc---CceEE
Confidence 999999999999999999999999999998642 146778999999999999999999999999999973 48999
Q ss_pred eecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHH
Q 010380 329 NMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVAR 408 (512)
Q Consensus 329 ~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~ 408 (512)
++||. ++..+.|++.+|++||+|+.+|+++|+.|++++||+||+|+||+|+|++...... ..... ......
T Consensus 143 ~isS~-~~~~~~~~~~~Y~asKaAl~~l~r~la~el~~~gIrVn~v~PG~i~T~~~~~~~~--~~~~~------~~~~~~ 213 (271)
T PRK06505 143 TLTYG-GSTRVMPNYNVMGVAKAALEASVRYLAADYGPQGIRVNAISAGPVRTLAGAGIGD--ARAIF------SYQQRN 213 (271)
T ss_pred EEcCC-CccccCCccchhhhhHHHHHHHHHHHHHHHhhcCeEEEEEecCCccccccccCcc--hHHHH------HHHhhc
Confidence 99987 5677888999999999999999999999999999999999999999998532111 00000 011122
Q ss_pred HhccccccchhhhhhhhhcCChHHHHHHHHHHhccCccc
Q 010380 409 TLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWF 447 (512)
Q Consensus 409 ~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~ 447 (512)
.+++++..|+|+++++.||+++...+.++..+..||++.
T Consensus 214 ~p~~r~~~peeva~~~~fL~s~~~~~itG~~i~vdgG~~ 252 (271)
T PRK06505 214 SPLRRTVTIDEVGGSALYLLSDLSSGVTGEIHFVDSGYN 252 (271)
T ss_pred CCccccCCHHHHHHHHHHHhCccccccCceEEeecCCcc
Confidence 467888999999999999999988888888888888774
|
|
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-38 Score=310.24 Aligned_cols=244 Identities=25% Similarity=0.388 Sum_probs=208.2
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
+++++|+++||||++|||+++|++|+++|++|++++|+.+++++..+++.+ .+.++..+.+|+
T Consensus 5 ~~~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~-----------------~~~~~~~~~~D~ 67 (253)
T PRK05867 5 FDLHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGT-----------------SGGKVVPVCCDV 67 (253)
T ss_pred ccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHh-----------------cCCeEEEEEccC
Confidence 357899999999999999999999999999999999999888877776654 345788899999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|+++++++++++.+.++++|+||||||... ..++.+.+.++|++++++|+.+++.++++++|.|.+++.+|+||++||
T Consensus 68 ~~~~~~~~~~~~~~~~~g~id~lv~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS 146 (253)
T PRK05867 68 SQHQQVTSMLDQVTAELGGIDIAVCNAGIIT-VTPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQGGVIINTAS 146 (253)
T ss_pred CCHHHHHHHHHHHHHHhCCCCEEEECCCCCC-CCChhhCCHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCcEEEEECc
Confidence 9999999999999999999999999999876 577888999999999999999999999999999987655689999988
Q ss_pred CCCCCC-CCC-CcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHh
Q 010380 333 AGSGGS-STP-LTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTL 410 (512)
Q Consensus 333 ~~a~~~-~~p-~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~ 410 (512)
. ++.. ..+ ....|++||+|+++|+++++.|++++||+||+|+||+|+|++...... . ........+
T Consensus 147 ~-~~~~~~~~~~~~~Y~asKaal~~~~~~la~e~~~~gI~vn~i~PG~v~t~~~~~~~~-~----------~~~~~~~~~ 214 (253)
T PRK05867 147 M-SGHIINVPQQVSHYCASKAAVIHLTKAMAVELAPHKIRVNSVSPGYILTELVEPYTE-Y----------QPLWEPKIP 214 (253)
T ss_pred H-HhcCCCCCCCccchHHHHHHHHHHHHHHHHHHhHhCeEEEEeecCCCCCcccccchH-H----------HHHHHhcCC
Confidence 7 3332 223 457899999999999999999999999999999999999998643211 0 011122356
Q ss_pred ccccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 411 VPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 411 l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
++++..|+|+++++.||+++...+.++..+..||++
T Consensus 215 ~~r~~~p~~va~~~~~L~s~~~~~~tG~~i~vdgG~ 250 (253)
T PRK05867 215 LGRLGRPEELAGLYLYLASEASSYMTGSDIVIDGGY 250 (253)
T ss_pred CCCCcCHHHHHHHHHHHcCcccCCcCCCeEEECCCc
Confidence 788999999999999999998878888888888776
|
|
| >KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-38 Score=315.04 Aligned_cols=256 Identities=29% Similarity=0.432 Sum_probs=209.5
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
.++.+|+++|||+++|||+++|++|++.|++|++++|+++.+++...++..... .+.++..+.||+
T Consensus 4 ~~l~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~Dv 69 (270)
T KOG0725|consen 4 GRLAGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELGGLGY--------------TGGKVLAIVCDV 69 (270)
T ss_pred ccCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--------------CCCeeEEEECcC
Confidence 568999999999999999999999999999999999999999988888765211 256899999999
Q ss_pred CChhhHHHHHHHHHHH-cCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhh-HHHHHHHHHHHHHhCCCCCeEEee
Q 010380 253 CEPADVQKLSNFAVNE-FGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVG-SILCTREAMRVMRDQPKGGHIFNM 330 (512)
Q Consensus 253 td~~sv~~~~~~i~~~-~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g-~~~l~k~~lp~m~~~~~~g~IV~v 330 (512)
++++++++++++..++ +|+||+||||||......++.++++|+|++++++|+.| .+.+.+.+.|++.++ ++|+|+++
T Consensus 70 ~~~~~~~~l~~~~~~~~~GkidiLvnnag~~~~~~~~~~~s~e~~d~~~~~Nl~G~~~~~~~~a~~~~~~~-~gg~I~~~ 148 (270)
T KOG0725|consen 70 SKEVDVEKLVEFAVEKFFGKIDILVNNAGALGLTGSILDLSEEVFDKIMATNLRGSAFCLKQAARPMLKKS-KGGSIVNI 148 (270)
T ss_pred CCHHHHHHHHHHHHHHhCCCCCEEEEcCCcCCCCCChhhCCHHHHHHHHhhhchhHHHHHHHHHHHHHHhc-CCceEEEE
Confidence 9999999999999998 79999999999998855589999999999999999996 555555555555554 78899999
Q ss_pred cCCCCCCCCCCCc-chhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcch-hhhhhhhhhcCCHHHHHH
Q 010380 331 DGAGSGGSSTPLT-AVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTI-QNKQMFNIICELPETVAR 408 (512)
Q Consensus 331 SS~~a~~~~~p~~-~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~-~~~~~~~~~~~~pe~vA~ 408 (512)
||. ++..+.+.. .+|++||+|+++|+++||.||.++|||||+|+||+|.|++....... ..+.+... .+.-..
T Consensus 149 ss~-~~~~~~~~~~~~Y~~sK~al~~ltr~lA~El~~~gIRvN~v~PG~i~T~~~~~~~~~~~~~~~~~~----~~~~~~ 223 (270)
T KOG0725|consen 149 SSV-AGVGPGPGSGVAYGVSKAALLQLTRSLAKELAKHGIRVNSVSPGLVKTSLRAAGLDDGEMEEFKEA----TDSKGA 223 (270)
T ss_pred ecc-ccccCCCCCcccchhHHHHHHHHHHHHHHHHhhcCcEEEEeecCcEeCCccccccccchhhHHhhh----hccccc
Confidence 988 455554444 79999999999999999999999999999999999999982111110 00111110 001123
Q ss_pred HhccccccchhhhhhhhhcCChHHHHHHHHHHhccCcccc
Q 010380 409 TLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWFD 448 (512)
Q Consensus 409 ~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~~ 448 (512)
.+++|+..|+|++..+.||+++.+.+.++..++.||+...
T Consensus 224 ~p~gr~g~~~eva~~~~fla~~~asyitG~~i~vdgG~~~ 263 (270)
T KOG0725|consen 224 VPLGRVGTPEEVAEAAAFLASDDASYITGQTIIVDGGFTV 263 (270)
T ss_pred cccCCccCHHHHHHhHHhhcCcccccccCCEEEEeCCEEe
Confidence 4689999999999999999999887889999998887643
|
|
| >PRK06603 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-38 Score=312.43 Aligned_cols=244 Identities=17% Similarity=0.149 Sum_probs=200.7
Q ss_pred CCCCCEEEEECCCC--hHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEcc
Q 010380 174 KAGPRNVVITGSTR--GLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACD 251 (512)
Q Consensus 174 ~l~gk~vLVTGass--GIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~D 251 (512)
.+++|+++||||++ |||+++|+.|+++|++|++++|++ +.++..+++.+. .+. ..+++||
T Consensus 5 ~~~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~-~~~~~~~~l~~~----------------~g~-~~~~~~D 66 (260)
T PRK06603 5 LLQGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSE-VLEKRVKPLAEE----------------IGC-NFVSELD 66 (260)
T ss_pred ccCCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCch-HHHHHHHHHHHh----------------cCC-ceEEEcc
Confidence 46789999999997 999999999999999999999884 344445555431 122 2457899
Q ss_pred CCChhhHHHHHHHHHHHcCCCcccccccccCCC---CCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEE
Q 010380 252 VCEPADVQKLSNFAVNEFGSIDIWINNAGTNKG---FKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIF 328 (512)
Q Consensus 252 ltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~---~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV 328 (512)
++|+++++++++++.+++|++|+||||||+... ..++.+.+.++|++++++|+.+++.++++++|+|++ +|+||
T Consensus 67 v~~~~~v~~~~~~~~~~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~m~~---~G~Iv 143 (260)
T PRK06603 67 VTNPKSISNLFDDIKEKWGSFDFLLHGMAFADKNELKGRYVDTSLENFHNSLHISCYSLLELSRSAEALMHD---GGSIV 143 (260)
T ss_pred CCCHHHHHHHHHHHHHHcCCccEEEEccccCCcccccCccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhcc---CceEE
Confidence 999999999999999999999999999998542 246788999999999999999999999999999963 48999
Q ss_pred eecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHH
Q 010380 329 NMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVAR 408 (512)
Q Consensus 329 ~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~ 408 (512)
++||. ++..+.|++..|++||+|+++|+++|+.|++++||+||+|+||+|+|+|....... .... .+....
T Consensus 144 ~isS~-~~~~~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~~~~--~~~~------~~~~~~ 214 (260)
T PRK06603 144 TLTYY-GAEKVIPNYNVMGVAKAALEASVKYLANDMGENNIRVNAISAGPIKTLASSAIGDF--STML------KSHAAT 214 (260)
T ss_pred EEecC-ccccCCCcccchhhHHHHHHHHHHHHHHHhhhcCeEEEEEecCcCcchhhhcCCCc--HHHH------HHHHhc
Confidence 99997 56677888999999999999999999999999999999999999999985321100 0000 111223
Q ss_pred HhccccccchhhhhhhhhcCChHHHHHHHHHHhccCccc
Q 010380 409 TLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWF 447 (512)
Q Consensus 409 ~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~ 447 (512)
.+++|+..|+|+++++.||+++...+.++..+..||+|.
T Consensus 215 ~p~~r~~~pedva~~~~~L~s~~~~~itG~~i~vdgG~~ 253 (260)
T PRK06603 215 APLKRNTTQEDVGGAAVYLFSELSKGVTGEIHYVDCGYN 253 (260)
T ss_pred CCcCCCCCHHHHHHHHHHHhCcccccCcceEEEeCCccc
Confidence 567888999999999999999988788888888888764
|
|
| >PRK07370 enoyl-(acyl carrier protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-38 Score=311.44 Aligned_cols=244 Identities=16% Similarity=0.185 Sum_probs=201.6
Q ss_pred CCCCCEEEEECCC--ChHHHHHHHHHHHCCCEEEEEEcChh--hHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEE
Q 010380 174 KAGPRNVVITGST--RGLGKALAREFLLSGDRVVVASRSSE--SVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIA 249 (512)
Q Consensus 174 ~l~gk~vLVTGas--sGIG~aiA~~La~~Ga~Vvl~~R~~~--~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~ 249 (512)
++++|+++||||+ +|||+++|++|+++|++|++++|+.+ +.++..+++.+ .+.++.+++
T Consensus 3 ~l~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~ 65 (258)
T PRK07370 3 DLTGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDEKGRFEKKVRELTE-----------------PLNPSLFLP 65 (258)
T ss_pred ccCCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCcccchHHHHHHHHHh-----------------ccCcceEee
Confidence 5789999999986 89999999999999999999887643 33444455433 123467889
Q ss_pred ccCCChhhHHHHHHHHHHHcCCCcccccccccCCC---CCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCe
Q 010380 250 CDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKG---FKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGH 326 (512)
Q Consensus 250 ~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~---~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~ 326 (512)
+|++|+++++++++++.+++|++|+||||||+... ..++.+.+.++|++++++|+.++++++++++|.|++ +|+
T Consensus 66 ~Dl~d~~~v~~~~~~~~~~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~~~~m~~---~g~ 142 (258)
T PRK07370 66 CDVQDDAQIEETFETIKQKWGKLDILVHCLAFAGKEELIGDFSATSREGFARALEISAYSLAPLCKAAKPLMSE---GGS 142 (258)
T ss_pred cCcCCHHHHHHHHHHHHHHcCCCCEEEEcccccCcccccCcchhhCHHHHHHHheeeeHHHHHHHHHHHHHHhh---CCe
Confidence 99999999999999999999999999999998641 256888999999999999999999999999999974 489
Q ss_pred EEeecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHH
Q 010380 327 IFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETV 406 (512)
Q Consensus 327 IV~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~v 406 (512)
||++||. .+..+.|+...|++||+|+.+|+++|+.|++++||+||+|+||+|+|++....... .... .+..
T Consensus 143 Iv~isS~-~~~~~~~~~~~Y~asKaal~~l~~~la~el~~~gI~Vn~i~PG~v~T~~~~~~~~~--~~~~------~~~~ 213 (258)
T PRK07370 143 IVTLTYL-GGVRAIPNYNVMGVAKAALEASVRYLAAELGPKNIRVNAISAGPIRTLASSAVGGI--LDMI------HHVE 213 (258)
T ss_pred EEEEecc-ccccCCcccchhhHHHHHHHHHHHHHHHHhCcCCeEEEEEecCcccCchhhccccc--hhhh------hhhh
Confidence 9999997 57778899999999999999999999999999999999999999999975321100 0000 0112
Q ss_pred HHHhccccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 407 ARTLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 407 A~~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
+..+++++..|+|+++++.||+++...+.++..+..||++
T Consensus 214 ~~~p~~r~~~~~dva~~~~fl~s~~~~~~tG~~i~vdgg~ 253 (258)
T PRK07370 214 EKAPLRRTVTQTEVGNTAAFLLSDLASGITGQTIYVDAGY 253 (258)
T ss_pred hcCCcCcCCCHHHHHHHHHHHhChhhccccCcEEEECCcc
Confidence 2356788999999999999999998888888777777765
|
|
| >PRK07533 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-38 Score=310.35 Aligned_cols=246 Identities=17% Similarity=0.207 Sum_probs=201.7
Q ss_pred ccCCCCCCEEEEECCC--ChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEE
Q 010380 171 EHCKAGPRNVVITGST--RGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGI 248 (512)
Q Consensus 171 ~~~~l~gk~vLVTGas--sGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v 248 (512)
+.+++++|++|||||+ +|||+++|++|+++|++|++++|+.+.. +..+++.+.. ..+.++
T Consensus 4 ~~~~~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~-~~~~~~~~~~-----------------~~~~~~ 65 (258)
T PRK07533 4 PLLPLAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKAR-PYVEPLAEEL-----------------DAPIFL 65 (258)
T ss_pred cccccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhH-HHHHHHHHhh-----------------ccceEE
Confidence 4567899999999998 5999999999999999999999986432 2233333311 124578
Q ss_pred EccCCChhhHHHHHHHHHHHcCCCcccccccccCCC---CCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCC
Q 010380 249 ACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKG---FKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGG 325 (512)
Q Consensus 249 ~~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~---~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g 325 (512)
.||++|+++++++++++.+++|++|+||||||+... ..++.+.+.++|++++++|+.++++++++++|+|++ +|
T Consensus 66 ~~D~~~~~~v~~~~~~~~~~~g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~---~g 142 (258)
T PRK07533 66 PLDVREPGQLEAVFARIAEEWGRLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTN---GG 142 (258)
T ss_pred ecCcCCHHHHHHHHHHHHHHcCCCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhcc---CC
Confidence 999999999999999999999999999999998642 256788999999999999999999999999999953 48
Q ss_pred eEEeecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHH
Q 010380 326 HIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPET 405 (512)
Q Consensus 326 ~IV~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~ 405 (512)
+||++||. ++..+.+++..|++||+|+.+|+++|+.|++++||+||+|+||+|+|+|....... . .. ..+.
T Consensus 143 ~Ii~iss~-~~~~~~~~~~~Y~asKaal~~l~~~la~el~~~gI~Vn~v~PG~v~T~~~~~~~~~-~-~~------~~~~ 213 (258)
T PRK07533 143 SLLTMSYY-GAEKVVENYNLMGPVKAALESSVRYLAAELGPKGIRVHAISPGPLKTRAASGIDDF-D-AL------LEDA 213 (258)
T ss_pred EEEEEecc-ccccCCccchhhHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcCChhhhccCCc-H-HH------HHHH
Confidence 99999987 56677788999999999999999999999999999999999999999986432110 0 00 0112
Q ss_pred HHHHhccccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 406 VARTLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 406 vA~~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
....+++++..|+|++..+.||+++...+.++..+..||++
T Consensus 214 ~~~~p~~r~~~p~dva~~~~~L~s~~~~~itG~~i~vdgg~ 254 (258)
T PRK07533 214 AERAPLRRLVDIDDVGAVAAFLASDAARRLTGNTLYIDGGY 254 (258)
T ss_pred HhcCCcCCCCCHHHHHHHHHHHhChhhccccCcEEeeCCcc
Confidence 23456778899999999999999998777778777777765
|
|
| >PRK07063 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=307.42 Aligned_cols=251 Identities=24% Similarity=0.301 Sum_probs=210.4
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
++++|+++||||++|||+++|++|+++|++|++++|+++++++..+++.+.. .+.++.++.||++
T Consensus 4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~---------------~~~~~~~~~~Dl~ 68 (260)
T PRK07063 4 RLAGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDV---------------AGARVLAVPADVT 68 (260)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcc---------------CCceEEEEEccCC
Confidence 4679999999999999999999999999999999999988887777765410 2357889999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
|+++++++++++.+.++++|+||||||... ..+..+.+.++|++++++|+.++++++++++|.|.++ +.|+||++||.
T Consensus 69 ~~~~~~~~~~~~~~~~g~id~li~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~g~iv~isS~ 146 (260)
T PRK07063 69 DAASVAAAVAAAEEAFGPLDVLVNNAGINV-FADPLAMTDEDWRRCFAVDLDGAWNGCRAVLPGMVER-GRGSIVNIAST 146 (260)
T ss_pred CHHHHHHHHHHHHHHhCCCcEEEECCCcCC-CCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-CCeEEEEECCh
Confidence 999999999999999999999999999875 4667788999999999999999999999999999876 56899999997
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhccc
Q 010380 334 GSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPR 413 (512)
Q Consensus 334 ~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~r 413 (512)
++..+.++...|++||+|+++|+++|+.|++++||+||+|+||+|+|++............ . .........++++
T Consensus 147 -~~~~~~~~~~~Y~~sKaa~~~~~~~la~el~~~gIrvn~v~PG~v~t~~~~~~~~~~~~~~-~---~~~~~~~~~~~~r 221 (260)
T PRK07063 147 -HAFKIIPGCFPYPVAKHGLLGLTRALGIEYAARNVRVNAIAPGYIETQLTEDWWNAQPDPA-A---ARAETLALQPMKR 221 (260)
T ss_pred -hhccCCCCchHHHHHHHHHHHHHHHHHHHhCccCeEEEEEeeCCccChhhhhhhhccCChH-H---HHHHHHhcCCCCC
Confidence 6777788889999999999999999999999999999999999999998643211000000 0 0011122346788
Q ss_pred cccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 414 IRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 414 ~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
+..|+|++.++.||+++...+.++..+..||++
T Consensus 222 ~~~~~~va~~~~fl~s~~~~~itG~~i~vdgg~ 254 (260)
T PRK07063 222 IGRPEEVAMTAVFLASDEAPFINATCITIDGGR 254 (260)
T ss_pred CCCHHHHHHHHHHHcCccccccCCcEEEECCCe
Confidence 999999999999999998777788777777765
|
|
| >PRK08690 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=309.65 Aligned_cols=244 Identities=13% Similarity=0.099 Sum_probs=198.5
Q ss_pred CCCCEEEEECC--CChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 175 AGPRNVVITGS--TRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 175 l~gk~vLVTGa--ssGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
+++|+++|||| ++|||+++|++|+++|++|++++|+. +.++..+++.+. ......++||+
T Consensus 4 ~~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~-~~~~~~~~~~~~-----------------~~~~~~~~~Dv 65 (261)
T PRK08690 4 LQGKKILITGMISERSIAYGIAKACREQGAELAFTYVVD-KLEERVRKMAAE-----------------LDSELVFRCDV 65 (261)
T ss_pred cCCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcH-HHHHHHHHHHhc-----------------cCCceEEECCC
Confidence 68999999997 67999999999999999999998863 333444444331 12345789999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCC---C-CCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEE
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGF---K-PLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIF 328 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~---~-~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV 328 (512)
+|+++++++++++.+++|+||+||||||+.... . .+.+.+.++|++++++|+.++++++++++|.|+++ +|+||
T Consensus 66 ~~~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~p~m~~~--~g~Iv 143 (261)
T PRK08690 66 ASDDEINQVFADLGKHWDGLDGLVHSIGFAPKEALSGDFLDSISREAFNTAHEISAYSLPALAKAARPMMRGR--NSAIV 143 (261)
T ss_pred CCHHHHHHHHHHHHHHhCCCcEEEECCccCCccccccchhhhcCHHHHHHHHHhchHHHHHHHHHHHHHhhhc--CcEEE
Confidence 999999999999999999999999999986521 1 24567889999999999999999999999999754 58999
Q ss_pred eecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHH
Q 010380 329 NMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVAR 408 (512)
Q Consensus 329 ~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~ 408 (512)
++||. ++..+.|++..|++||+|+.+|+++|+.|++++||+||+|+||+|+|++...... ..... .+....
T Consensus 144 ~iss~-~~~~~~~~~~~Y~asKaal~~l~~~la~e~~~~gIrVn~i~PG~v~T~~~~~~~~--~~~~~------~~~~~~ 214 (261)
T PRK08690 144 ALSYL-GAVRAIPNYNVMGMAKASLEAGIRFTAACLGKEGIRCNGISAGPIKTLAASGIAD--FGKLL------GHVAAH 214 (261)
T ss_pred EEccc-ccccCCCCcccchhHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccchhhhcCCc--hHHHH------HHHhhc
Confidence 99987 5667888999999999999999999999999999999999999999998543211 00100 111233
Q ss_pred HhccccccchhhhhhhhhcCChHHHHHHHHHHhccCccc
Q 010380 409 TLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWF 447 (512)
Q Consensus 409 ~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~ 447 (512)
.+++|+..|+|+++++.||+++...+.++..+..||++.
T Consensus 215 ~p~~r~~~peevA~~v~~l~s~~~~~~tG~~i~vdgG~~ 253 (261)
T PRK08690 215 NPLRRNVTIEEVGNTAAFLLSDLSSGITGEITYVDGGYS 253 (261)
T ss_pred CCCCCCCCHHHHHHHHHHHhCcccCCcceeEEEEcCCcc
Confidence 567899999999999999999887777787777777763
|
|
| >PRK08589 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-37 Score=307.63 Aligned_cols=251 Identities=20% Similarity=0.297 Sum_probs=208.0
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
++++|++|||||++|||+++|++|+++|++|++++|+ +++++..+++.+ .+.++.++.||++
T Consensus 3 ~l~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~-----------------~~~~~~~~~~Dl~ 64 (272)
T PRK08589 3 RLENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKS-----------------NGGKAKAYHVDIS 64 (272)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHh-----------------cCCeEEEEEeecC
Confidence 3679999999999999999999999999999999999 777777777654 3457889999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
|+++++++++++.+++|++|+||||||+.....++.+.+.++|++++++|+.+++.++++++|+|+++ +|+||++||.
T Consensus 65 ~~~~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~g~iv~isS~ 142 (272)
T PRK08589 65 DEQQVKDFASEIKEQFGRVDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMMEQ--GGSIINTSSF 142 (272)
T ss_pred CHHHHHHHHHHHHHHcCCcCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCEEEEeCch
Confidence 99999999999999999999999999986534677888999999999999999999999999999875 4899999987
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhccc
Q 010380 334 GSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPR 413 (512)
Q Consensus 334 ~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~r 413 (512)
++..+.++...|++||+|+++|+++++.|+.++||+||+|+||+|+|++................. .......++++
T Consensus 143 -~~~~~~~~~~~Y~asKaal~~l~~~la~e~~~~gI~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 219 (272)
T PRK08589 143 -SGQAADLYRSGYNAAKGAVINFTKSIAIEYGRDGIRANAIAPGTIETPLVDKLTGTSEDEAGKTFR--ENQKWMTPLGR 219 (272)
T ss_pred -hhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCchhhhhcccchhhHHHHHh--hhhhccCCCCC
Confidence 677777888999999999999999999999999999999999999999875422111111000000 00011245678
Q ss_pred cccchhhhhhhhhcCChHHHHHHHHHHhccCccc
Q 010380 414 IRVVKGSGKAINYLTPPRILLALVTAWLRRGRWF 447 (512)
Q Consensus 414 ~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~ 447 (512)
+..|+++++.+.||+++...+.++..+..+|++.
T Consensus 220 ~~~~~~va~~~~~l~s~~~~~~~G~~i~vdgg~~ 253 (272)
T PRK08589 220 LGKPEEVAKLVVFLASDDSSFITGETIRIDGGVM 253 (272)
T ss_pred CcCHHHHHHHHHHHcCchhcCcCCCEEEECCCcc
Confidence 8899999999999999877777777777777653
|
|
| >PRK08303 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=317.53 Aligned_cols=270 Identities=17% Similarity=0.226 Sum_probs=206.5
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcCh----------hhHHHHHHHHHHHHhhhhhhcCCCCcccccCc
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSS----------ESVRMTVTELEENLKEGMMAAGGSSKKNLVHA 243 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~----------~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~ 243 (512)
++++|+++||||++|||+++|++|+++|++|++++|+. ++++++.+++.. .+.
T Consensus 5 ~l~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~-----------------~~~ 67 (305)
T PRK08303 5 PLRGKVALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTA-----------------AGG 67 (305)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHh-----------------cCC
Confidence 47899999999999999999999999999999999984 344444444433 345
Q ss_pred eEEEEEccCCChhhHHHHHHHHHHHcCCCccccccc-ccCC---CCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 010380 244 KVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNA-GTNK---GFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMR 319 (512)
Q Consensus 244 ~v~~v~~Dltd~~sv~~~~~~i~~~~g~IDvLInnA-G~~~---~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~ 319 (512)
++.++.||++|+++++++++++.+++|+||+||||| |... ...++.+.+.++|++++++|+.++++++++++|+|.
T Consensus 68 ~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDilVnnA~g~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~lp~m~ 147 (305)
T PRK08303 68 RGIAVQVDHLVPEQVRALVERIDREQGRLDILVNDIWGGEKLFEWGKPVWEHSLDKGLRMLRLAIDTHLITSHFALPLLI 147 (305)
T ss_pred ceEEEEcCCCCHHHHHHHHHHHHHHcCCccEEEECCcccccccccCCchhhcCHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 678899999999999999999999999999999999 8531 125677889999999999999999999999999998
Q ss_pred hCCCCCeEEeecCCCCCCC--CCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhh
Q 010380 320 DQPKGGHIFNMDGAGSGGS--STPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFN 397 (512)
Q Consensus 320 ~~~~~g~IV~vSS~~a~~~--~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~ 397 (512)
++ ++|+||++||..+... +.++...|++||+|+.+|+++|+.|+++.||+||+|+||+|+|+|............
T Consensus 148 ~~-~~g~IV~isS~~~~~~~~~~~~~~~Y~asKaal~~lt~~La~el~~~gIrVn~v~PG~v~T~~~~~~~~~~~~~~-- 224 (305)
T PRK08303 148 RR-PGGLVVEITDGTAEYNATHYRLSVFYDLAKTSVNRLAFSLAHELAPHGATAVALTPGWLRSEMMLDAFGVTEENW-- 224 (305)
T ss_pred hC-CCcEEEEECCccccccCcCCCCcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEecCCccccHHHHHhhccCccch--
Confidence 76 4689999998633221 334577899999999999999999999999999999999999998532110000000
Q ss_pred hhcCCHHHHHHHh-ccccccchhhhhhhhhcCChHH-HHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHc
Q 010380 398 IICELPETVARTL-VPRIRVVKGSGKAINYLTPPRI-LLALVTAWLRRGRWFDDQGRALYAAEADRIRNWAENR 469 (512)
Q Consensus 398 ~~~~~pe~vA~~~-l~r~~~~~~va~~v~~L~s~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~rl~~w~~~~ 469 (512)
.+.....+ .++...|++++.++.||+++.. .+.++. ++.++.+.+..+...++..+++||+..++.
T Consensus 225 -----~~~~~~~p~~~~~~~peevA~~v~fL~s~~~~~~itG~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (305)
T PRK08303 225 -----RDALAKEPHFAISETPRYVGRAVAALAADPDVARWNGQ-SLSSGQLARVYGFTDLDGSRPDAWRYLVEV 292 (305)
T ss_pred -----hhhhccccccccCCCHHHHHHHHHHHHcCcchhhcCCc-EEEhHHHHHhcCccCCCCCCCcchhhhhhc
Confidence 11122233 3566789999999999999864 344433 344455544444445555667788766553
|
|
| >PRK07478 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-37 Score=304.00 Aligned_cols=248 Identities=24% Similarity=0.317 Sum_probs=206.9
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
+++++|+++||||++|||+++|++|+++|++|++++|++++++++.+++.+ .+.++.++.||+
T Consensus 2 ~~~~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~-----------------~~~~~~~~~~D~ 64 (254)
T PRK07478 2 MRLNGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRA-----------------EGGEAVALAGDV 64 (254)
T ss_pred CCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-----------------cCCcEEEEEcCC
Confidence 457899999999999999999999999999999999999888877777654 345788899999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|+++++++++++.++++++|+||||||+..+..++.+.+.++|++++++|+.++++++++++|.|+++ +.++||++||
T Consensus 65 ~~~~~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~-~~~~iv~~sS 143 (254)
T PRK07478 65 RDEAYAKALVALAVERFGGLDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLAR-GGGSLIFTST 143 (254)
T ss_pred CCHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCceEEEEec
Confidence 999999999999999999999999999986534678889999999999999999999999999999876 5789999998
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhcc
Q 010380 333 AGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVP 412 (512)
Q Consensus 333 ~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~ 412 (512)
..+...+.++...|++||+|++.|+++|+.|+.++||+||+|+||+|+|+|....... ...... .....+.+
T Consensus 144 ~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~--~~~~~~------~~~~~~~~ 215 (254)
T PRK07478 144 FVGHTAGFPGMAAYAASKAGLIGLTQVLAAEYGAQGIRVNALLPGGTDTPMGRAMGDT--PEALAF------VAGLHALK 215 (254)
T ss_pred hHhhccCCCCcchhHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeCcccCcccccccCC--HHHHHH------HHhcCCCC
Confidence 7322356788899999999999999999999999999999999999999986432110 000000 01123467
Q ss_pred ccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 413 RIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 413 r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
++..|++++..+.||+++...+.++..+..+|++
T Consensus 216 ~~~~~~~va~~~~~l~s~~~~~~~G~~~~~dgg~ 249 (254)
T PRK07478 216 RMAQPEEIAQAALFLASDAASFVTGTALLVDGGV 249 (254)
T ss_pred CCcCHHHHHHHHHHHcCchhcCCCCCeEEeCCch
Confidence 7889999999999999987766666666666654
|
|
| >PRK07062 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-37 Score=306.13 Aligned_cols=255 Identities=20% Similarity=0.259 Sum_probs=211.6
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
.++++|+++||||++|||+++|++|+++|++|++++|+++++++..+++.+.. .+.++.++.+|+
T Consensus 4 ~~l~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~---------------~~~~~~~~~~D~ 68 (265)
T PRK07062 4 IQLEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKF---------------PGARLLAARCDV 68 (265)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhC---------------CCceEEEEEecC
Confidence 35789999999999999999999999999999999999988888777765521 134788999999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|+++++++++++.+.++++|+||||||... ..++.+.+.++|++.+++|+.+++.+++.++|.|+++ +.|+||++||
T Consensus 69 ~~~~~v~~~~~~~~~~~g~id~li~~Ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~g~iv~isS 146 (265)
T PRK07062 69 LDEADVAAFAAAVEARFGGVDMLVNNAGQGR-VSTFADTTDDAWRDELELKYFSVINPTRAFLPLLRAS-AAASIVCVNS 146 (265)
T ss_pred CCHHHHHHHHHHHHHhcCCCCEEEECCCCCC-CCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcc-CCcEEEEecc
Confidence 9999999999999999999999999999876 5778899999999999999999999999999999876 5689999999
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHH---HHH
Q 010380 333 AGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETV---ART 409 (512)
Q Consensus 333 ~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~v---A~~ 409 (512)
. ++..+.++...|+++|+|+.+|+++|+.|+.++||+||+|+||+|+|+++............ ......+.+ ...
T Consensus 147 ~-~~~~~~~~~~~y~asKaal~~~~~~la~e~~~~gi~v~~i~PG~v~t~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 224 (265)
T PRK07062 147 L-LALQPEPHMVATSAARAGLLNLVKSLATELAPKGVRVNSILLGLVESGQWRRRYEARADPGQ-SWEAWTAALARKKGI 224 (265)
T ss_pred c-cccCCCCCchHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccchhhhHHHHhhccCC-ChHHHHHHHhhcCCC
Confidence 8 57777888999999999999999999999999999999999999999986431110000000 000000111 224
Q ss_pred hccccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 410 LVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 410 ~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
+++++..|++++.++.||+++...+.++..+..||++
T Consensus 225 p~~r~~~p~~va~~~~~L~s~~~~~~tG~~i~vdgg~ 261 (265)
T PRK07062 225 PLGRLGRPDEAARALFFLASPLSSYTTGSHIDVSGGF 261 (265)
T ss_pred CcCCCCCHHHHHHHHHHHhCchhcccccceEEEcCce
Confidence 6778999999999999999988777777777777764
|
|
| >PRK08594 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-37 Score=306.18 Aligned_cols=246 Identities=17% Similarity=0.171 Sum_probs=199.6
Q ss_pred CCCCCCEEEEECCC--ChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEc
Q 010380 173 CKAGPRNVVITGST--RGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIAC 250 (512)
Q Consensus 173 ~~l~gk~vLVTGas--sGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~ 250 (512)
+++++|+++||||+ +|||+++|++|+++|++|++++|+... ++..+++.+.. .+.++.+++|
T Consensus 3 ~~~~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~-~~~~~~~~~~~---------------~~~~~~~~~~ 66 (257)
T PRK08594 3 LSLEGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERL-EKEVRELADTL---------------EGQESLLLPC 66 (257)
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccc-hHHHHHHHHHc---------------CCCceEEEec
Confidence 35789999999997 899999999999999999999876422 12223332211 1346788999
Q ss_pred cCCChhhHHHHHHHHHHHcCCCcccccccccCCC---CCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeE
Q 010380 251 DVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKG---FKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHI 327 (512)
Q Consensus 251 Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~---~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~I 327 (512)
|++|+++++++++++.+++|++|+||||||+... ..++.+.+.++|++.+++|+.++++++++++|+|.+ +|+|
T Consensus 67 Dv~d~~~v~~~~~~~~~~~g~ld~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~---~g~I 143 (257)
T PRK08594 67 DVTSDEEITACFETIKEEVGVIHGVAHCIAFANKEDLRGEFLETSRDGFLLAQNISAYSLTAVAREAKKLMTE---GGSI 143 (257)
T ss_pred CCCCHHHHHHHHHHHHHhCCCccEEEECcccCCCCcCCCccccCCHHHHHHHHhhhHHHHHHHHHHHHHhccc---CceE
Confidence 9999999999999999999999999999998641 256778999999999999999999999999999964 4899
Q ss_pred EeecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHH
Q 010380 328 FNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVA 407 (512)
Q Consensus 328 V~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA 407 (512)
|++||. ++..+.|+...|++||+|+++|+++|+.|++++||+||+|+||+|+|++....... .. .. .+...
T Consensus 144 v~isS~-~~~~~~~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~~~~~-~~-~~------~~~~~ 214 (257)
T PRK08594 144 VTLTYL-GGERVVQNYNVMGVAKASLEASVKYLANDLGKDGIRVNAISAGPIRTLSAKGVGGF-NS-IL------KEIEE 214 (257)
T ss_pred EEEccc-CCccCCCCCchhHHHHHHHHHHHHHHHHHhhhcCCEEeeeecCcccCHhHhhhccc-cH-HH------HHHhh
Confidence 999998 56777888999999999999999999999999999999999999999975321100 00 00 11122
Q ss_pred HHhccccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 408 RTLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 408 ~~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
..+++++..|++++.++.||+++...+.++..+..||++
T Consensus 215 ~~p~~r~~~p~~va~~~~~l~s~~~~~~tG~~~~~dgg~ 253 (257)
T PRK08594 215 RAPLRRTTTQEEVGDTAAFLFSDLSRGVTGENIHVDSGY 253 (257)
T ss_pred cCCccccCCHHHHHHHHHHHcCcccccccceEEEECCch
Confidence 346778899999999999999998877777777777665
|
|
| >PRK07984 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-37 Score=306.12 Aligned_cols=242 Identities=14% Similarity=0.169 Sum_probs=196.8
Q ss_pred CCCCEEEEECCCC--hHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 175 AGPRNVVITGSTR--GLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 175 l~gk~vLVTGass--GIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
+++|+++||||++ |||+++|++|+++|++|++++|+ +++++..+++... ...+.++.||+
T Consensus 4 l~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~-~~~~~~~~~~~~~-----------------~~~~~~~~~Dl 65 (262)
T PRK07984 4 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQN-DKLKGRVEEFAAQ-----------------LGSDIVLPCDV 65 (262)
T ss_pred cCCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecc-hhHHHHHHHHHhc-----------------cCCceEeecCC
Confidence 6789999999986 99999999999999999999997 3444555555431 12456789999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCC----CCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEE
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGF----KPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIF 328 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~----~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV 328 (512)
+|+++++++++++.+++|++|+||||||+.... .++.+.+.++|++++++|+.+++.+++++.|.|. + +|+||
T Consensus 66 ~~~~~v~~~~~~~~~~~g~iD~linnAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~-~--~g~Iv 142 (262)
T PRK07984 66 AEDASIDAMFAELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLN-P--GSALL 142 (262)
T ss_pred CCHHHHHHHHHHHHhhcCCCCEEEECCccCCccccCCcchhhcCHHHHHHHhhhhhHHHHHHHHHHHHHhc-C--CcEEE
Confidence 999999999999999999999999999986421 1256788999999999999999999999998664 2 47999
Q ss_pred eecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHH
Q 010380 329 NMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVAR 408 (512)
Q Consensus 329 ~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~ 408 (512)
++||. ++..+.|++..|++||+|+++|+++|+.|++++||+||+|+||+|+|++...... .... .......
T Consensus 143 ~iss~-~~~~~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~i~PG~v~T~~~~~~~~--~~~~------~~~~~~~ 213 (262)
T PRK07984 143 TLSYL-GAERAIPNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGIKD--FRKM------LAHCEAV 213 (262)
T ss_pred EEecC-CCCCCCCCcchhHHHHHHHHHHHHHHHHHhcccCcEEeeeecCcccchHHhcCCc--hHHH------HHHHHHc
Confidence 99987 5667788899999999999999999999999999999999999999987432111 0000 0111234
Q ss_pred HhccccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 409 TLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 409 ~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
.+++++..|+|+++++.||+++...+.++..+..+|++
T Consensus 214 ~p~~r~~~pedva~~~~~L~s~~~~~itG~~i~vdgg~ 251 (262)
T PRK07984 214 TPIRRTVTIEDVGNSAAFLCSDLSAGISGEVVHVDGGF 251 (262)
T ss_pred CCCcCCCCHHHHHHHHHHHcCcccccccCcEEEECCCc
Confidence 56789999999999999999988777777777777665
|
|
| >PRK06114 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=298.63 Aligned_cols=245 Identities=22% Similarity=0.293 Sum_probs=206.3
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChh-hHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEcc
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSE-SVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACD 251 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~-~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~D 251 (512)
+++++|+++||||++|||+++|++|+++|++|++++|+.+ .+++..+++.. .+.++.++.+|
T Consensus 4 ~~~~~k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~-----------------~~~~~~~~~~D 66 (254)
T PRK06114 4 FDLDGQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEA-----------------AGRRAIQIAAD 66 (254)
T ss_pred cCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHh-----------------cCCceEEEEcC
Confidence 4688999999999999999999999999999999999854 45555555543 34568889999
Q ss_pred CCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeec
Q 010380 252 VCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD 331 (512)
Q Consensus 252 ltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vS 331 (512)
++|+++++++++++.+.++++|+||||||+.. ..++.+.+.++|++++++|+.++++++++++|.|+++ +.++||++|
T Consensus 67 ~~~~~~i~~~~~~~~~~~g~id~li~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~iv~is 144 (254)
T PRK06114 67 VTSKADLRAAVARTEAELGALTLAVNAAGIAN-ANPAEEMEEEQWQTVMDINLTGVFLSCQAEARAMLEN-GGGSIVNIA 144 (254)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCCCCC-CCChHhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhc-CCcEEEEEC
Confidence 99999999999999999999999999999876 5778889999999999999999999999999999876 568999999
Q ss_pred CCCCCCCCCC--CcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHH
Q 010380 332 GAGSGGSSTP--LTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVART 409 (512)
Q Consensus 332 S~~a~~~~~p--~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~ 409 (512)
|. ++..+.+ ....|++||+|+++|+++++.|+.++||+||+|+||+++|+|..... ..+ . ..+.....
T Consensus 145 S~-~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~e~~~~gi~v~~v~PG~i~t~~~~~~~--~~~-~------~~~~~~~~ 214 (254)
T PRK06114 145 SM-SGIIVNRGLLQAHYNASKAGVIHLSKSLAMEWVGRGIRVNSISPGYTATPMNTRPE--MVH-Q------TKLFEEQT 214 (254)
T ss_pred ch-hhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeecCccCccccccc--chH-H------HHHHHhcC
Confidence 87 4544443 36899999999999999999999999999999999999999864211 000 0 11223345
Q ss_pred hccccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 410 LVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 410 ~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
+++++..|+|++.++.||+++...+.++..+..||++
T Consensus 215 p~~r~~~~~dva~~~~~l~s~~~~~~tG~~i~~dgg~ 251 (254)
T PRK06114 215 PMQRMAKVDEMVGPAVFLLSDAASFCTGVDLLVDGGF 251 (254)
T ss_pred CCCCCcCHHHHHHHHHHHcCccccCcCCceEEECcCE
Confidence 7889999999999999999998878888877777765
|
|
| >PRK08159 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=305.52 Aligned_cols=244 Identities=14% Similarity=0.176 Sum_probs=199.3
Q ss_pred CCCCCEEEEECCC--ChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEcc
Q 010380 174 KAGPRNVVITGST--RGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACD 251 (512)
Q Consensus 174 ~l~gk~vLVTGas--sGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~D 251 (512)
.+++|++|||||+ +|||+++|++|+++|++|++++|++. ..+..+++.+. .+ ....+++|
T Consensus 7 ~~~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~-~~~~~~~l~~~----------------~~-~~~~~~~D 68 (272)
T PRK08159 7 LMAGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDA-LKKRVEPLAAE----------------LG-AFVAGHCD 68 (272)
T ss_pred cccCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchH-HHHHHHHHHHh----------------cC-CceEEecC
Confidence 3578999999997 89999999999999999999988732 23333444331 11 24568999
Q ss_pred CCChhhHHHHHHHHHHHcCCCcccccccccCCC---CCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEE
Q 010380 252 VCEPADVQKLSNFAVNEFGSIDIWINNAGTNKG---FKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIF 328 (512)
Q Consensus 252 ltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~---~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV 328 (512)
++|+++++++++++.+++|++|+||||||+... ..++.+.+.++|++++++|+.++++++++++|+|.+ +|+||
T Consensus 69 l~~~~~v~~~~~~~~~~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~---~g~Iv 145 (272)
T PRK08159 69 VTDEASIDAVFETLEKKWGKLDFVVHAIGFSDKDELTGRYVDTSRDNFTMTMDISVYSFTAVAQRAEKLMTD---GGSIL 145 (272)
T ss_pred CCCHHHHHHHHHHHHHhcCCCcEEEECCcccCccccccCcccCCHHHHHHHHhHHHHHHHHHHHHHHHhcCC---CceEE
Confidence 999999999999999999999999999998642 256778999999999999999999999999999963 48999
Q ss_pred eecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHH
Q 010380 329 NMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVAR 408 (512)
Q Consensus 329 ~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~ 408 (512)
++||. ++..+.|++..|++||+|+.+|+++|+.|+.++||+||+|+||+|+|++...... ..... ......
T Consensus 146 ~iss~-~~~~~~p~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~~~--~~~~~------~~~~~~ 216 (272)
T PRK08159 146 TLTYY-GAEKVMPHYNVMGVAKAALEASVKYLAVDLGPKNIRVNAISAGPIKTLAASGIGD--FRYIL------KWNEYN 216 (272)
T ss_pred EEecc-ccccCCCcchhhhhHHHHHHHHHHHHHHHhcccCeEEEEeecCCcCCHHHhcCCc--chHHH------HHHHhC
Confidence 99987 5667788999999999999999999999999999999999999999987532110 00000 011123
Q ss_pred HhccccccchhhhhhhhhcCChHHHHHHHHHHhccCccc
Q 010380 409 TLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWF 447 (512)
Q Consensus 409 ~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~ 447 (512)
.+++++..|+|+++++.||+++...+.++..+..+|++.
T Consensus 217 ~p~~r~~~peevA~~~~~L~s~~~~~itG~~i~vdgG~~ 255 (272)
T PRK08159 217 APLRRTVTIEEVGDSALYLLSDLSRGVTGEVHHVDSGYH 255 (272)
T ss_pred CcccccCCHHHHHHHHHHHhCccccCccceEEEECCCce
Confidence 567788999999999999999888788888888888864
|
|
| >PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=300.89 Aligned_cols=247 Identities=19% Similarity=0.271 Sum_probs=203.6
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEc-ChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASR-SSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R-~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
++++|+++||||++|||+++|++|+++|++|++++| +.+.++...+++... .+.++.++.+|+
T Consensus 5 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~D~ 68 (260)
T PRK08416 5 EMKGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDLEQK----------------YGIKAKAYPLNI 68 (260)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHh----------------cCCceEEEEcCC
Confidence 578999999999999999999999999999998875 556666666665432 245788999999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCC-----CCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeE
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNK-----GFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHI 327 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~-----~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~I 327 (512)
+|+++++++++++.+.++++|+||||||+.. ...++.+.+.+++++.+++|+.+++.+++.++|.|+++ +.|+|
T Consensus 69 ~~~~~~~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~g~i 147 (260)
T PRK08416 69 LEPETYKELFKKIDEDFDRVDFFISNAIISGRAVVGGYTKFMRLKPKGLNNIYTATVNAFVVGAQEAAKRMEKV-GGGSI 147 (260)
T ss_pred CCHHHHHHHHHHHHHhcCCccEEEECccccccccccccCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHhhhcc-CCEEE
Confidence 9999999999999999999999999999742 13567788899999999999999999999999999876 56899
Q ss_pred EeecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHH
Q 010380 328 FNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVA 407 (512)
Q Consensus 328 V~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA 407 (512)
|++||. .+..+.|+...|++||+|+++|+++|+.|+.++||+||+|+||+++|++....... ... ..+...
T Consensus 148 v~isS~-~~~~~~~~~~~Y~asK~a~~~~~~~la~el~~~gi~v~~v~PG~i~T~~~~~~~~~--~~~------~~~~~~ 218 (260)
T PRK08416 148 ISLSST-GNLVYIENYAGHGTSKAAVETMVKYAATELGEKNIRVNAVSGGPIDTDALKAFTNY--EEV------KAKTEE 218 (260)
T ss_pred EEEecc-ccccCCCCcccchhhHHHHHHHHHHHHHHhhhhCeEEEEEeeCcccChhhhhccCC--HHH------HHHHHh
Confidence 999997 56677888999999999999999999999999999999999999999986432110 000 011123
Q ss_pred HHhccccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 408 RTLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 408 ~~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
..+++++..|++++.++.||+++...+.++..+..+|++
T Consensus 219 ~~~~~r~~~p~~va~~~~~l~~~~~~~~~G~~i~vdgg~ 257 (260)
T PRK08416 219 LSPLNRMGQPEDLAGACLFLCSEKASWLTGQTIVVDGGT 257 (260)
T ss_pred cCCCCCCCCHHHHHHHHHHHcChhhhcccCcEEEEcCCe
Confidence 345678899999999999999987766666666666654
|
|
| >PRK06997 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=302.01 Aligned_cols=242 Identities=12% Similarity=0.108 Sum_probs=192.9
Q ss_pred CCCCEEEEECC--CChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 175 AGPRNVVITGS--TRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 175 l~gk~vLVTGa--ssGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
+++|+++|||| ++|||+++|++|+++|++|++++|... .++..+++.+. .+ ...++.||+
T Consensus 4 l~~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~~~-~~~~~~~~~~~----------------~~-~~~~~~~Dv 65 (260)
T PRK06997 4 LAGKRILITGLLSNRSIAYGIAKACKREGAELAFTYVGDR-FKDRITEFAAE----------------FG-SDLVFPCDV 65 (260)
T ss_pred cCCcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccchH-HHHHHHHHHHh----------------cC-CcceeeccC
Confidence 67899999996 689999999999999999999876522 22223333221 11 224689999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCC---CC-CcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEE
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGF---KP-LLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIF 328 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~---~~-~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV 328 (512)
+|+++++++++.+.+++|++|+||||||+.... .+ +.+.+.++|++.+++|+.++++++++++|+|.+ .|+||
T Consensus 66 ~d~~~v~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~lp~m~~---~g~Ii 142 (260)
T PRK06997 66 ASDEQIDALFASLGQHWDGLDGLVHSIGFAPREAIAGDFLDGLSRENFRIAHDISAYSFPALAKAALPMLSD---DASLL 142 (260)
T ss_pred CCHHHHHHHHHHHHHHhCCCcEEEEccccCCccccccccchhcCHHHHHHHHHhhhHHHHHHHHHHHHhcCC---CceEE
Confidence 999999999999999999999999999986421 12 456889999999999999999999999999942 47999
Q ss_pred eecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHH
Q 010380 329 NMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVAR 408 (512)
Q Consensus 329 ~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~ 408 (512)
++||. ++..+.|+...|++||+|+++|+++|+.|++++||+||+|+||+|+|++...... .... ..+..++
T Consensus 143 ~iss~-~~~~~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~i~PG~v~T~~~~~~~~--~~~~------~~~~~~~ 213 (260)
T PRK06997 143 TLSYL-GAERVVPNYNTMGLAKASLEASVRYLAVSLGPKGIRANGISAGPIKTLAASGIKD--FGKI------LDFVESN 213 (260)
T ss_pred EEecc-ccccCCCCcchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCccccchhccccc--hhhH------HHHHHhc
Confidence 99987 5667788899999999999999999999999999999999999999987532110 0000 0111233
Q ss_pred HhccccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 409 TLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 409 ~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
.+++++..|+|+++++.||+++...+.++..+..||++
T Consensus 214 ~p~~r~~~pedva~~~~~l~s~~~~~itG~~i~vdgg~ 251 (260)
T PRK06997 214 APLRRNVTIEEVGNVAAFLLSDLASGVTGEITHVDSGF 251 (260)
T ss_pred CcccccCCHHHHHHHHHHHhCccccCcceeEEEEcCCh
Confidence 56788999999999999999987777777777776664
|
|
| >PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-36 Score=298.07 Aligned_cols=246 Identities=19% Similarity=0.268 Sum_probs=205.6
Q ss_pred cCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEcc
Q 010380 172 HCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACD 251 (512)
Q Consensus 172 ~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~D 251 (512)
.+++++|+++||||++|||+++|++|+++|++|++++++.. ++..+++.+ .+.++.++++|
T Consensus 5 ~~~l~~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~~~~--~~~~~~~~~-----------------~~~~~~~~~~D 65 (253)
T PRK08993 5 AFSLEGKVAVVTGCDTGLGQGMALGLAEAGCDIVGINIVEP--TETIEQVTA-----------------LGRRFLSLTAD 65 (253)
T ss_pred ccCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEecCcch--HHHHHHHHh-----------------cCCeEEEEECC
Confidence 35688999999999999999999999999999998887642 333444433 23568889999
Q ss_pred CCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeec
Q 010380 252 VCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD 331 (512)
Q Consensus 252 ltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vS 331 (512)
++|+++++++++++.++++++|++|||||... ..++.+.+.++|++++++|+.+++.++++++|.|.+++.+|+||++|
T Consensus 66 l~~~~~~~~~~~~~~~~~~~~D~li~~Ag~~~-~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~g~iv~is 144 (253)
T PRK08993 66 LRKIDGIPALLERAVAEFGHIDILVNNAGLIR-REDAIEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIA 144 (253)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCEEEECCCCCC-CCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEEC
Confidence 99999999999999999999999999999876 56788899999999999999999999999999998865568999999
Q ss_pred CCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhc
Q 010380 332 GAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLV 411 (512)
Q Consensus 332 S~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l 411 (512)
|. .+..+.+....|++||+|+++++++++.|+.++||+||+|+||+++|++....... ... ..+.....+.
T Consensus 145 S~-~~~~~~~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pG~v~T~~~~~~~~~--~~~------~~~~~~~~p~ 215 (253)
T PRK08993 145 SM-LSFQGGIRVPSYTASKSGVMGVTRLMANEWAKHNINVNAIAPGYMATNNTQQLRAD--EQR------SAEILDRIPA 215 (253)
T ss_pred ch-hhccCCCCCcchHHHHHHHHHHHHHHHHHhhhhCeEEEEEeeCcccCcchhhhccc--hHH------HHHHHhcCCC
Confidence 87 56777788899999999999999999999999999999999999999986432110 000 0122234456
Q ss_pred cccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 412 PRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 412 ~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
+++..|++++..+.||+++...+.++..+..||++
T Consensus 216 ~r~~~p~eva~~~~~l~s~~~~~~~G~~~~~dgg~ 250 (253)
T PRK08993 216 GRWGLPSDLMGPVVFLASSASDYINGYTIAVDGGW 250 (253)
T ss_pred CCCcCHHHHHHHHHHHhCccccCccCcEEEECCCE
Confidence 78899999999999999998877777777777665
|
|
| >PLN02730 enoyl-[acyl-carrier-protein] reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=309.22 Aligned_cols=257 Identities=18% Similarity=0.173 Sum_probs=201.3
Q ss_pred CCCCCCEEEEECC--CChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEc
Q 010380 173 CKAGPRNVVITGS--TRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIAC 250 (512)
Q Consensus 173 ~~l~gk~vLVTGa--ssGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~ 250 (512)
++++||++||||| ++|||+++|+.|+++|++|++ +|+.++++++..++.+...+..... ...........+.+
T Consensus 5 ~~l~gk~alITGa~~s~GIG~a~A~~la~~Ga~Vv~-~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 79 (303)
T PLN02730 5 IDLRGKRAFIAGVADDNGYGWAIAKALAAAGAEILV-GTWVPALNIFETSLRRGKFDESRKL----PDGSLMEITKVYPL 79 (303)
T ss_pred cCCCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEE-EeCcchhhHHHHhhhccccchhhhc----ccccccCcCeeeec
Confidence 5689999999999 899999999999999999998 8898888888777653100000000 00000112457888
Q ss_pred cC--CCh------------------hhHHHHHHHHHHHcCCCcccccccccCCC-CCCCcCCCHHHHHHHHHhhhhhHHH
Q 010380 251 DV--CEP------------------ADVQKLSNFAVNEFGSIDIWINNAGTNKG-FKPLLQFTNEEIEQIVSTNLVGSIL 309 (512)
Q Consensus 251 Dl--td~------------------~sv~~~~~~i~~~~g~IDvLInnAG~~~~-~~~~~~~s~e~~~~~~~vNv~g~~~ 309 (512)
|+ +++ ++++++++++.+++|+||+||||||+... ..++.+.+.++|++++++|+.++++
T Consensus 80 D~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~G~iDiLVnNAG~~~~~~~~~~~~~~e~~~~~~~vN~~~~~~ 159 (303)
T PLN02730 80 DAVFDTPEDVPEDVKTNKRYAGSSNWTVQEVAESVKADFGSIDILVHSLANGPEVTKPLLETSRKGYLAAISASSYSFVS 159 (303)
T ss_pred ceecCccccCchhhhcccccccCCHHHHHHHHHHHHHHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHHhHHHHH
Confidence 98 433 48999999999999999999999986431 3678999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCeEEeecCCCCCCCCCCCc-chhhHHHHHHHHHHHHHHHHhCC-CCeEEEEEeCCcccCCcccCC
Q 010380 310 CTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLT-AVYGSTKCGLRQLQASLFKESKR-SKVGVHTASPGMVLTDLLLSG 387 (512)
Q Consensus 310 l~k~~lp~m~~~~~~g~IV~vSS~~a~~~~~p~~-~~Y~aSKaAl~~l~~sLa~El~~-~GIrVn~V~PG~V~T~~~~~~ 387 (512)
++|+++|.|++ .|+||++||. ++..+.|+. ..|++||+|+++|+++|+.|+++ +||+||+|+||+|+|+|....
T Consensus 160 l~~~~~p~m~~---~G~II~isS~-a~~~~~p~~~~~Y~asKaAl~~l~~~la~El~~~~gIrVn~V~PG~v~T~~~~~~ 235 (303)
T PLN02730 160 LLQHFGPIMNP---GGASISLTYI-ASERIIPGYGGGMSSAKAALESDTRVLAFEAGRKYKIRVNTISAGPLGSRAAKAI 235 (303)
T ss_pred HHHHHHHHHhc---CCEEEEEech-hhcCCCCCCchhhHHHHHHHHHHHHHHHHHhCcCCCeEEEEEeeCCccCchhhcc
Confidence 99999999975 3899999987 566677765 58999999999999999999986 799999999999999987431
Q ss_pred cchhhhhhhhhhcCCHHH-HHHHhccccccchhhhhhhhhcCChHHHHHHHHHHhccCccc
Q 010380 388 STIQNKQMFNIICELPET-VARTLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWF 447 (512)
Q Consensus 388 ~~~~~~~~~~~~~~~pe~-vA~~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~ 447 (512)
.... .. .+. ....++.++..|++++..+.||+++...+.++..+..+|++.
T Consensus 236 -~~~~-~~-------~~~~~~~~pl~r~~~peevA~~~~fLaS~~a~~itG~~l~vdGG~~ 287 (303)
T PLN02730 236 -GFID-DM-------IEYSYANAPLQKELTADEVGNAAAFLASPLASAITGATIYVDNGLN 287 (303)
T ss_pred -cccH-HH-------HHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCccCCEEEECCCcc
Confidence 1000 10 111 122356788899999999999999888777787777777763
|
|
| >PRK08340 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=299.27 Aligned_cols=249 Identities=23% Similarity=0.233 Sum_probs=205.1
Q ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhhH
Q 010380 179 NVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPADV 258 (512)
Q Consensus 179 ~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~sv 258 (512)
+++||||++|||+++|++|+++|++|++++|+++++++..+++.+ . .++.++.+|++|++++
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~-----------------~-~~~~~~~~Dv~d~~~~ 63 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKELKE-----------------Y-GEVYAVKADLSDKDDL 63 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHh-----------------c-CCceEEEcCCCCHHHH
Confidence 689999999999999999999999999999999888877777754 1 2577899999999999
Q ss_pred HHHHHHHHHHcCCCcccccccccCC-CCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCCC
Q 010380 259 QKLSNFAVNEFGSIDIWINNAGTNK-GFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGG 337 (512)
Q Consensus 259 ~~~~~~i~~~~g~IDvLInnAG~~~-~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~~ 337 (512)
+++++++.++++++|+||||||... ...++.+.+.++|.+.+++|+.+++++++.++|.|.++.++|+||++||. ++.
T Consensus 64 ~~~~~~~~~~~g~id~li~naG~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~g~iv~isS~-~~~ 142 (259)
T PRK08340 64 KNLVKEAWELLGGIDALVWNAGNVRCEPCMLHEAGYSDWLEAALLHLVAPGYLTTLLIQAWLEKKMKGVLVYLSSV-SVK 142 (259)
T ss_pred HHHHHHHHHhcCCCCEEEECCCCCCCCccccccccHHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCEEEEEeCc-ccC
Confidence 9999999999999999999999753 12457788899999999999999999999999998754467899999988 567
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcC--CHHHHHHHhccccc
Q 010380 338 SSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICE--LPETVARTLVPRIR 415 (512)
Q Consensus 338 ~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~--~pe~vA~~~l~r~~ 415 (512)
.+.++...|++||+|+++|+++|+.|+.++||+||+|+||+++|++.........+........ ..+..++.+++|+.
T Consensus 143 ~~~~~~~~y~~sKaa~~~~~~~la~e~~~~gI~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~ 222 (259)
T PRK08340 143 EPMPPLVLADVTRAGLVQLAKGVSRTYGGKGIRAYTVLLGSFDTPGARENLARIAEERGVSFEETWEREVLERTPLKRTG 222 (259)
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHhCCCCEEEEEeccCcccCccHHHHHHhhhhccCCchHHHHHHHHhccCCccCCC
Confidence 7788899999999999999999999999999999999999999998642110000000000000 01123445778999
Q ss_pred cchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 416 VVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 416 ~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
.|+|+++++.||+++...+.++..+..||++
T Consensus 223 ~p~dva~~~~fL~s~~~~~itG~~i~vdgg~ 253 (259)
T PRK08340 223 RWEELGSLIAFLLSENAEYMLGSTIVFDGAM 253 (259)
T ss_pred CHHHHHHHHHHHcCcccccccCceEeecCCc
Confidence 9999999999999998888888888777775
|
|
| >PRK07791 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=305.53 Aligned_cols=240 Identities=22% Similarity=0.282 Sum_probs=200.9
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcCh---------hhHHHHHHHHHHHHhhhhhhcCCCCcccccCce
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSS---------ESVRMTVTELEENLKEGMMAAGGSSKKNLVHAK 244 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~---------~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~ 244 (512)
.+++|++|||||++|||+++|++|+++|++|++++|+. +.++++.+++.+ .+.+
T Consensus 3 ~l~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~-----------------~~~~ 65 (286)
T PRK07791 3 LLDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVA-----------------AGGE 65 (286)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHh-----------------cCCc
Confidence 36789999999999999999999999999999998876 666666666643 3457
Q ss_pred EEEEEccCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCC-
Q 010380 245 VAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPK- 323 (512)
Q Consensus 245 v~~v~~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~- 323 (512)
+.++.+|++|+++++++++++.+++|+||+||||||+.. ..++.+.+.++|++++++|+.++++++++++|+|+++..
T Consensus 66 ~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAG~~~-~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~ 144 (286)
T PRK07791 66 AVANGDDIADWDGAANLVDAAVETFGGLDVLVNNAGILR-DRMIANMSEEEWDAVIAVHLKGHFATLRHAAAYWRAESKA 144 (286)
T ss_pred eEEEeCCCCCHHHHHHHHHHHHHhcCCCCEEEECCCCCC-CCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhccc
Confidence 888999999999999999999999999999999999876 567889999999999999999999999999999976421
Q ss_pred ----CCeEEeecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhh
Q 010380 324 ----GGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNII 399 (512)
Q Consensus 324 ----~g~IV~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~ 399 (512)
.|+||++||. ++..+.++...|++||+|+++|+++|+.|++++||+||+|+|| ++|+|..... ...
T Consensus 145 ~~~~~g~Iv~isS~-~~~~~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~Pg-~~T~~~~~~~----~~~---- 214 (286)
T PRK07791 145 GRAVDARIINTSSG-AGLQGSVGQGNYSAAKAGIAALTLVAAAELGRYGVTVNAIAPA-ARTRMTETVF----AEM---- 214 (286)
T ss_pred CCCCCcEEEEeCch-hhCcCCCCchhhHHHHHHHHHHHHHHHHHHHHhCeEEEEECCC-CCCCcchhhH----HHH----
Confidence 3799999987 6777889999999999999999999999999999999999999 8999853211 000
Q ss_pred cCCHHHHHHHhcc--ccccchhhhhhhhhcCChHHHHHHHHHHhccCccc
Q 010380 400 CELPETVARTLVP--RIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWF 447 (512)
Q Consensus 400 ~~~pe~vA~~~l~--r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~ 447 (512)
....... +...|++++.++.||+++...+.++..+..+|++.
T Consensus 215 ------~~~~~~~~~~~~~pedva~~~~~L~s~~~~~itG~~i~vdgG~~ 258 (286)
T PRK07791 215 ------MAKPEEGEFDAMAPENVSPLVVWLGSAESRDVTGKVFEVEGGKI 258 (286)
T ss_pred ------HhcCcccccCCCCHHHHHHHHHHHhCchhcCCCCcEEEEcCCce
Confidence 0011111 34679999999999999887777777777777654
|
|
| >PRK08085 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=294.08 Aligned_cols=246 Identities=20% Similarity=0.290 Sum_probs=209.8
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
+++.+|++|||||++|||+++|++|+++|++|++++|+++++++..+++.. .+.++.++.+|+
T Consensus 5 ~~l~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~-----------------~~~~~~~~~~Dl 67 (254)
T PRK08085 5 FSLAGKNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQ-----------------EGIKAHAAPFNV 67 (254)
T ss_pred ccCCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHh-----------------cCCeEEEEecCC
Confidence 567899999999999999999999999999999999998888877777654 245678899999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|+++++++++.+.+.++++|+||||||... ..++.+.+.++|++++++|+.+++.+++++++.|.++ +.++||++||
T Consensus 68 ~~~~~~~~~~~~~~~~~~~id~vi~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~iv~isS 145 (254)
T PRK08085 68 THKQEVEAAIEHIEKDIGPIDVLINNAGIQR-RHPFTEFPEQEWNDVIAVNQTAVFLVSQAVARYMVKR-QAGKIINICS 145 (254)
T ss_pred CCHHHHHHHHHHHHHhcCCCCEEEECCCcCC-CCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCcEEEEEcc
Confidence 9999999999999999999999999999865 5678889999999999999999999999999999876 4689999998
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhcc
Q 010380 333 AGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVP 412 (512)
Q Consensus 333 ~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~ 412 (512)
. .+..+.++...|+++|+|+++++++++.|++++||+||+|+||+++|++....... .... +......+++
T Consensus 146 ~-~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~pG~~~t~~~~~~~~~--~~~~------~~~~~~~p~~ 216 (254)
T PRK08085 146 M-QSELGRDTITPYAASKGAVKMLTRGMCVELARHNIQVNGIAPGYFKTEMTKALVED--EAFT------AWLCKRTPAA 216 (254)
T ss_pred c-hhccCCCCCcchHHHHHHHHHHHHHHHHHHHhhCeEEEEEEeCCCCCcchhhhccC--HHHH------HHHHhcCCCC
Confidence 7 56677788899999999999999999999999999999999999999986432111 1110 1112345678
Q ss_pred ccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 413 RIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 413 r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
++..|+|+++++.||+++...+.++..+..||++
T Consensus 217 ~~~~~~~va~~~~~l~~~~~~~i~G~~i~~dgg~ 250 (254)
T PRK08085 217 RWGDPQELIGAAVFLSSKASDFVNGHLLFVDGGM 250 (254)
T ss_pred CCcCHHHHHHHHHHHhCccccCCcCCEEEECCCe
Confidence 8899999999999999988777777766666654
|
|
| >PRK07889 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-36 Score=298.76 Aligned_cols=240 Identities=13% Similarity=0.107 Sum_probs=192.8
Q ss_pred CCCCCEEEEECC--CChHHHHHHHHHHHCCCEEEEEEcCh--hhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEE
Q 010380 174 KAGPRNVVITGS--TRGLGKALAREFLLSGDRVVVASRSS--ESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIA 249 (512)
Q Consensus 174 ~l~gk~vLVTGa--ssGIG~aiA~~La~~Ga~Vvl~~R~~--~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~ 249 (512)
++++|+++|||| ++|||+++|++|+++|++|++++|+. +.++++.+++ +.++.+++
T Consensus 4 ~~~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~--------------------~~~~~~~~ 63 (256)
T PRK07889 4 LLEGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKRL--------------------PEPAPVLE 63 (256)
T ss_pred cccCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHhc--------------------CCCCcEEe
Confidence 367899999999 89999999999999999999999864 2233322221 12567899
Q ss_pred ccCCChhhHHHHHHHHHHHcCCCcccccccccCCCC---CCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCe
Q 010380 250 CDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGF---KPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGH 326 (512)
Q Consensus 250 ~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~---~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~ 326 (512)
||++|+++++++++++.+++|++|+||||||+.... .++.+.+.++|++++++|+.++++++++++|+|++ +|+
T Consensus 64 ~Dv~~~~~i~~~~~~~~~~~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~---~g~ 140 (256)
T PRK07889 64 LDVTNEEHLASLADRVREHVDGLDGVVHSIGFAPQSALGGNFLDAPWEDVATALHVSAYSLKSLAKALLPLMNE---GGS 140 (256)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCcEEEEccccccccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhccc---Cce
Confidence 999999999999999999999999999999986421 35678889999999999999999999999999973 479
Q ss_pred EEeecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHH
Q 010380 327 IFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETV 406 (512)
Q Consensus 327 IV~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~v 406 (512)
||++++. +..+.|.+..|++||+|+++|+++|+.|++++||+||+|+||+|+|+|....... .... ....
T Consensus 141 Iv~is~~--~~~~~~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~~~~~--~~~~------~~~~ 210 (256)
T PRK07889 141 IVGLDFD--ATVAWPAYDWMGVAKAALESTNRYLARDLGPRGIRVNLVAAGPIRTLAAKAIPGF--ELLE------EGWD 210 (256)
T ss_pred EEEEeec--ccccCCccchhHHHHHHHHHHHHHHHHHhhhcCeEEEeeccCcccChhhhcccCc--HHHH------HHHH
Confidence 9999865 3455678888999999999999999999999999999999999999985432110 0000 1111
Q ss_pred HHHhcc-ccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 407 ARTLVP-RIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 407 A~~~l~-r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
.+.+++ ++..|+|+++.+.||+++...+.++..+..+|++
T Consensus 211 ~~~p~~~~~~~p~evA~~v~~l~s~~~~~~tG~~i~vdgg~ 251 (256)
T PRK07889 211 ERAPLGWDVKDPTPVARAVVALLSDWFPATTGEIVHVDGGA 251 (256)
T ss_pred hcCccccccCCHHHHHHHHHHHhCcccccccceEEEEcCce
Confidence 234555 5789999999999999987777777777776665
|
|
| >PRK07035 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=290.37 Aligned_cols=247 Identities=22% Similarity=0.334 Sum_probs=207.8
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
+++++|+++||||++|||.+++++|+++|++|++++|+.++++++.+++.+ .+.++.++.+|+
T Consensus 4 ~~l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~-----------------~~~~~~~~~~D~ 66 (252)
T PRK07035 4 FDLTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVA-----------------AGGKAEALACHI 66 (252)
T ss_pred cccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-----------------cCCeEEEEEcCC
Confidence 568899999999999999999999999999999999998888777777654 345678899999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|.++++++++++.+.++++|+||||||......++.+.+.+++++.+++|+.+++.++++++|+|+++ +.++||++||
T Consensus 67 ~~~~~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~iv~~sS 145 (252)
T PRK07035 67 GEMEQIDALFAHIRERHGRLDILVNNAAANPYFGHILDTDLGAFQKTVDVNIRGYFFMSVEAGKLMKEQ-GGGSIVNVAS 145 (252)
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhC-CCcEEEEECc
Confidence 999999999999999999999999999975434667888999999999999999999999999999876 5689999998
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhcc
Q 010380 333 AGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVP 412 (512)
Q Consensus 333 ~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~ 412 (512)
. .+..+.++.+.|++||+++++|+++++.|+.++||+|++|+||+|+|++....... ... .++.....++.
T Consensus 146 ~-~~~~~~~~~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~i~PG~v~t~~~~~~~~~--~~~------~~~~~~~~~~~ 216 (252)
T PRK07035 146 V-NGVSPGDFQGIYSITKAAVISMTKAFAKECAPFGIRVNALLPGLTDTKFASALFKN--DAI------LKQALAHIPLR 216 (252)
T ss_pred h-hhcCCCCCCcchHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeccccCcccccccCC--HHH------HHHHHccCCCC
Confidence 7 56677888999999999999999999999999999999999999999986432211 111 11222334567
Q ss_pred ccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 413 RIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 413 r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
+...|+|+++.+.||+++.....++..+..||++
T Consensus 217 ~~~~~~~va~~~~~l~~~~~~~~~g~~~~~dgg~ 250 (252)
T PRK07035 217 RHAEPSEMAGAVLYLASDASSYTTGECLNVDGGY 250 (252)
T ss_pred CcCCHHHHHHHHHHHhCccccCccCCEEEeCCCc
Confidence 8889999999999999987666566555555543
|
|
| >PRK08277 D-mannonate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=295.31 Aligned_cols=252 Identities=21% Similarity=0.299 Sum_probs=209.9
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
+++++|+++||||++|||+++|++|+++|++|++++|+.+.+++..+++.+ .+.++.++.||+
T Consensus 6 ~~~~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-----------------~~~~~~~~~~Dl 68 (278)
T PRK08277 6 FSLKGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKA-----------------AGGEALAVKADV 68 (278)
T ss_pred eccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-----------------cCCeEEEEECCC
Confidence 467899999999999999999999999999999999998887777776654 345788999999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCC--------------CCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGF--------------KPLLQFTNEEIEQIVSTNLVGSILCTREAMRVM 318 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~--------------~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m 318 (512)
+|++++.++++++.++++++|+||||||...+. .++.+.+.++|++++++|+.+++.++++++|.|
T Consensus 69 ~~~~~v~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~ 148 (278)
T PRK08277 69 LDKESLEQARQQILEDFGPCDILINGAGGNHPKATTDNEFHELIEPTKTFFDLDEEGFEFVFDLNLLGTLLPTQVFAKDM 148 (278)
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCCCCcccccccccccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999975321 346788899999999999999999999999999
Q ss_pred HhCCCCCeEEeecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhh
Q 010380 319 RDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNI 398 (512)
Q Consensus 319 ~~~~~~g~IV~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~ 398 (512)
.++ +.|+||++||. ++..+.++...|++||+|+++|+++++.|+.+.||+||+|+||+|+|++..............
T Consensus 149 ~~~-~~g~ii~isS~-~~~~~~~~~~~Y~~sK~a~~~l~~~la~e~~~~girvn~v~Pg~v~t~~~~~~~~~~~~~~~~- 225 (278)
T PRK08277 149 VGR-KGGNIINISSM-NAFTPLTKVPAYSAAKAAISNFTQWLAVHFAKVGIRVNAIAPGFFLTEQNRALLFNEDGSLTE- 225 (278)
T ss_pred Hhc-CCcEEEEEccc-hhcCCCCCCchhHHHHHHHHHHHHHHHHHhCccCeEEEEEEeccCcCcchhhhhccccccchh-
Confidence 876 46899999988 677888899999999999999999999999999999999999999999753211100000000
Q ss_pred hcCCHHHHHHHhccccccchhhhhhhhhcCCh-HHHHHHHHHHhccCcc
Q 010380 399 ICELPETVARTLVPRIRVVKGSGKAINYLTPP-RILLALVTAWLRRGRW 446 (512)
Q Consensus 399 ~~~~pe~vA~~~l~r~~~~~~va~~v~~L~s~-~~~~~~~~~~~~~g~~ 446 (512)
...+.....+++++..|+|+++++.||+++ ...+.++..+..||++
T Consensus 226 --~~~~~~~~~p~~r~~~~~dva~~~~~l~s~~~~~~~tG~~i~vdgG~ 272 (278)
T PRK08277 226 --RANKILAHTPMGRFGKPEELLGTLLWLADEKASSFVTGVVLPVDGGF 272 (278)
T ss_pred --HHHHHhccCCccCCCCHHHHHHHHHHHcCccccCCcCCCEEEECCCe
Confidence 011223345678899999999999999998 7777777777777765
|
|
| >PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=294.39 Aligned_cols=250 Identities=23% Similarity=0.228 Sum_probs=202.1
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
.+++|+++||||++|||+++|++|+++|++|++++|++++++++.+++ +.++.++++|++
T Consensus 3 ~~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~--------------------~~~~~~~~~D~~ 62 (263)
T PRK06200 3 WLHGQVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASLRQRF--------------------GDHVLVVEGDVT 62 (263)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--------------------CCcceEEEccCC
Confidence 467899999999999999999999999999999999987765544332 235778999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHH----HHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEe
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEE----IEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFN 329 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~----~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~ 329 (512)
|+++++++++++.+.++++|+||||||+.....++.+.+.++ |++++++|+.+++.++++++|.|+++ +|+||+
T Consensus 63 ~~~~~~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~g~iv~ 140 (263)
T PRK06200 63 SYADNQRAVDQTVDAFGKLDCFVGNAGIWDYNTSLVDIPAETLDTAFDEIFNVNVKGYLLGAKAALPALKAS--GGSMIF 140 (263)
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEECCCCcccCCCcccCChhHHHHHHHHHeeeccHhHHHHHHHHHHHHHhc--CCEEEE
Confidence 999999999999999999999999999864335566677665 89999999999999999999999765 589999
Q ss_pred ecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcC-CHHHHHH
Q 010380 330 MDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICE-LPETVAR 408 (512)
Q Consensus 330 vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~-~pe~vA~ 408 (512)
++|. ++..+.++...|++||+|+++|+++|+.|+++. |+||+|+||+|+|+|.................. .......
T Consensus 141 ~sS~-~~~~~~~~~~~Y~~sK~a~~~~~~~la~el~~~-Irvn~i~PG~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (263)
T PRK06200 141 TLSN-SSFYPGGGGPLYTASKHAVVGLVRQLAYELAPK-IRVNGVAPGGTVTDLRGPASLGQGETSISDSPGLADMIAAI 218 (263)
T ss_pred ECCh-hhcCCCCCCchhHHHHHHHHHHHHHHHHHHhcC-cEEEEEeCCccccCCcCccccCCCCcccccccchhHHhhcC
Confidence 9987 567777888899999999999999999999884 999999999999998643211000000000000 0111223
Q ss_pred HhccccccchhhhhhhhhcCChH-HHHHHHHHHhccCccc
Q 010380 409 TLVPRIRVVKGSGKAINYLTPPR-ILLALVTAWLRRGRWF 447 (512)
Q Consensus 409 ~~l~r~~~~~~va~~v~~L~s~~-~~~~~~~~~~~~g~~~ 447 (512)
.+++++..|+|++.++.||+++. ..+.++..+..||++.
T Consensus 219 ~p~~r~~~~~eva~~~~fl~s~~~~~~itG~~i~vdgG~~ 258 (263)
T PRK06200 219 TPLQFAPQPEDHTGPYVLLASRRNSRALTGVVINADGGLG 258 (263)
T ss_pred CCCCCCCCHHHHhhhhhheecccccCcccceEEEEcCcee
Confidence 56789999999999999999988 7788888888888764
|
|
| >PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=291.18 Aligned_cols=246 Identities=22% Similarity=0.310 Sum_probs=205.6
Q ss_pred cCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEcc
Q 010380 172 HCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACD 251 (512)
Q Consensus 172 ~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~D 251 (512)
.+++++|++|||||++|||+++|++|+++|++|++++|+ ++.+++.+++.+ .+.++.++.||
T Consensus 10 ~~~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~-~~~~~~~~~~~~-----------------~~~~~~~~~~D 71 (258)
T PRK06935 10 FFSLDGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHG-TNWDETRRLIEK-----------------EGRKVTFVQVD 71 (258)
T ss_pred cccCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC-cHHHHHHHHHHh-----------------cCCceEEEEcC
Confidence 356889999999999999999999999999999999998 555555554433 24568899999
Q ss_pred CCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeec
Q 010380 252 VCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD 331 (512)
Q Consensus 252 ltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vS 331 (512)
++|+++++++++++.+.+|++|++|||||... ..++.+.+.++|++.+++|+.+++.++++++|.|+++ +.|+||++|
T Consensus 72 ~~~~~~i~~~~~~~~~~~g~id~li~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~g~iv~is 149 (258)
T PRK06935 72 LTKPESAEKVVKEALEEFGKIDILVNNAGTIR-RAPLLEYKDEDWNAVMDINLNSVYHLSQAVAKVMAKQ-GSGKIINIA 149 (258)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCCCCC-CCCcccCCHHHHHHHHHHhCHHHHHHHHHHHHHHHhc-CCeEEEEEC
Confidence 99999999999999999999999999999876 5778888999999999999999999999999999876 568999999
Q ss_pred CCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhc
Q 010380 332 GAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLV 411 (512)
Q Consensus 332 S~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l 411 (512)
|. .+..+.+....|++||+|++++++++++|+.+.||+||+|+||+|+|++......... . ..+.....+.
T Consensus 150 S~-~~~~~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~i~PG~v~t~~~~~~~~~~~--~------~~~~~~~~~~ 220 (258)
T PRK06935 150 SM-LSFQGGKFVPAYTASKHGVAGLTKAFANELAAYNIQVNAIAPGYIKTANTAPIRADKN--R------NDEILKRIPA 220 (258)
T ss_pred CH-HhccCCCCchhhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeccccccchhhcccChH--H------HHHHHhcCCC
Confidence 87 5667778889999999999999999999999999999999999999998532211100 0 0122234456
Q ss_pred cccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 412 PRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 412 ~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
++...|+|++.++.||+++...+.++..+..+|+.
T Consensus 221 ~~~~~~~dva~~~~~l~s~~~~~~~G~~i~~dgg~ 255 (258)
T PRK06935 221 GRWGEPDDLMGAAVFLASRASDYVNGHILAVDGGW 255 (258)
T ss_pred CCCCCHHHHHHHHHHHcChhhcCCCCCEEEECCCe
Confidence 78899999999999999988766666666666653
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=292.58 Aligned_cols=241 Identities=20% Similarity=0.276 Sum_probs=202.8
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
++++|+++||||++|||+++|++|+++|++|++++|+.+++++..+++ +.++.++.||++
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~--------------------~~~~~~~~~Dl~ 62 (261)
T PRK08265 3 GLAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASL--------------------GERARFIATDIT 62 (261)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--------------------CCeeEEEEecCC
Confidence 467899999999999999999999999999999999987766554432 246888999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
|+++++++++.+.+.++++|+||||||... ... .+.+.++|++.+++|+.++++++++++|.|. + ++|+||++||.
T Consensus 63 ~~~~~~~~~~~~~~~~g~id~lv~~ag~~~-~~~-~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~-~-~~g~ii~isS~ 138 (261)
T PRK08265 63 DDAAIERAVATVVARFGRVDILVNLACTYL-DDG-LASSRADWLAALDVNLVSAAMLAQAAHPHLA-R-GGGAIVNFTSI 138 (261)
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCCCCC-CCc-CcCCHHHHHHHHhHhhHHHHHHHHHHHHHHh-c-CCcEEEEECch
Confidence 999999999999999999999999999865 233 3678899999999999999999999999997 3 46899999987
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHH--HHhc
Q 010380 334 GSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVA--RTLV 411 (512)
Q Consensus 334 ~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA--~~~l 411 (512)
++..+.++...|+++|++++.++++++.|+.++||+||+|+||+++|++.......... . .+... ..++
T Consensus 139 -~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~~~t~~~~~~~~~~~~-~-------~~~~~~~~~p~ 209 (261)
T PRK08265 139 -SAKFAQTGRWLYPASKAAIRQLTRSMAMDLAPDGIRVNSVSPGWTWSRVMDELSGGDRA-K-------ADRVAAPFHLL 209 (261)
T ss_pred -hhccCCCCCchhHHHHHHHHHHHHHHHHHhcccCEEEEEEccCCccChhhhhhcccchh-H-------HHHhhcccCCC
Confidence 67778888999999999999999999999999999999999999999986432111000 0 01111 2457
Q ss_pred cccccchhhhhhhhhcCChHHHHHHHHHHhccCccc
Q 010380 412 PRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWF 447 (512)
Q Consensus 412 ~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~ 447 (512)
+++..|+|+++++.||+++...+.++..+..||++.
T Consensus 210 ~r~~~p~dva~~~~~l~s~~~~~~tG~~i~vdgg~~ 245 (261)
T PRK08265 210 GRVGDPEEVAQVVAFLCSDAASFVTGADYAVDGGYS 245 (261)
T ss_pred CCccCHHHHHHHHHHHcCccccCccCcEEEECCCee
Confidence 788999999999999999887777888888888763
|
|
| >PRK07985 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-35 Score=297.51 Aligned_cols=244 Identities=20% Similarity=0.271 Sum_probs=201.2
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcCh--hhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEcc
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSS--ESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACD 251 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~--~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~D 251 (512)
++++|++|||||++|||+++|++|+++|++|++++|+. +..+++.+.+.+ .+.++.++.||
T Consensus 46 ~~~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~D 108 (294)
T PRK07985 46 RLKDRKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEE-----------------CGRKAVLLPGD 108 (294)
T ss_pred ccCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHH-----------------cCCeEEEEEcc
Confidence 47889999999999999999999999999999988753 334443333322 34578889999
Q ss_pred CCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeec
Q 010380 252 VCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD 331 (512)
Q Consensus 252 ltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vS 331 (512)
++|++++.++++++.+.++++|++|||||......++.+.+.++|++++++|+.++++++++++|.|.+ +++||++|
T Consensus 109 l~~~~~~~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~---~g~iv~iS 185 (294)
T PRK07985 109 LSDEKFARSLVHEAHKALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPK---GASIITTS 185 (294)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhc---CCEEEEEC
Confidence 999999999999999999999999999997543467888999999999999999999999999999964 47999999
Q ss_pred CCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhc
Q 010380 332 GAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLV 411 (512)
Q Consensus 332 S~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l 411 (512)
|. ++..+.++..+|++||+|+++|+++++.|++++||+||+|+||+|+|++...... .... .++.....++
T Consensus 186 S~-~~~~~~~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~i~PG~v~t~~~~~~~~--~~~~------~~~~~~~~~~ 256 (294)
T PRK07985 186 SI-QAYQPSPHLLDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTALQISGGQ--TQDK------IPQFGQQTPM 256 (294)
T ss_pred Cc-hhccCCCCcchhHHHHHHHHHHHHHHHHHHhHhCcEEEEEECCcCccccccccCC--CHHH------HHHHhccCCC
Confidence 98 6777788899999999999999999999999999999999999999998532111 0110 1122234567
Q ss_pred cccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 412 PRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 412 ~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
+++..|+|+++++.||+++...+.++..+..+|++
T Consensus 257 ~r~~~pedva~~~~fL~s~~~~~itG~~i~vdgG~ 291 (294)
T PRK07985 257 KRAGQPAELAPVYVYLASQESSYVTAEVHGVCGGE 291 (294)
T ss_pred CCCCCHHHHHHHHHhhhChhcCCccccEEeeCCCe
Confidence 78899999999999999988777777766666654
|
|
| >TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=293.59 Aligned_cols=249 Identities=20% Similarity=0.232 Sum_probs=197.0
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
|++++|+++||||++|||+++|++|+++|++|++++|+.+.++++.+. .+.++.++.+|+
T Consensus 1 m~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~l~~~--------------------~~~~~~~~~~D~ 60 (262)
T TIGR03325 1 MRLKGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGLQELEAA--------------------HGDAVVGVEGDV 60 (262)
T ss_pred CCcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhh--------------------cCCceEEEEecc
Confidence 357899999999999999999999999999999999998765543221 234688899999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCH----HHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEE
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTN----EEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIF 328 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~----e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV 328 (512)
+|.++++++++++.++++++|+||||||+.....++.+.+. ++|++++++|+.++++++++++|.|.++ +|+||
T Consensus 61 ~~~~~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~--~g~iv 138 (262)
T TIGR03325 61 RSLDDHKEAVARCVAAFGKIDCLIPNAGIWDYSTALVDIPDDRIDEAFDEVFHINVKGYLLAVKAALPALVAS--RGSVI 138 (262)
T ss_pred CCHHHHHHHHHHHHHHhCCCCEEEECCCCCccCCccccCCchhhhHHHHHhheeecHhHHHHHHHHHHHHhhc--CCCEE
Confidence 99999999999999999999999999997542234444443 5799999999999999999999999865 47899
Q ss_pred eecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHH-H-
Q 010380 329 NMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPET-V- 406 (512)
Q Consensus 329 ~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~-v- 406 (512)
+++|. .+..+.++...|++||+|+++|+++++.|++++ |+||+|+||+|+|+|................ ..++ .
T Consensus 139 ~~sS~-~~~~~~~~~~~Y~~sKaa~~~l~~~la~e~~~~-irvn~i~PG~i~t~~~~~~~~~~~~~~~~~~--~~~~~~~ 214 (262)
T TIGR03325 139 FTISN-AGFYPNGGGPLYTAAKHAVVGLVKELAFELAPY-VRVNGVAPGGMSSDLRGPKSLGMADKSISTV--PLGDMLK 214 (262)
T ss_pred EEecc-ceecCCCCCchhHHHHHHHHHHHHHHHHhhccC-eEEEEEecCCCcCCCcccccccccccccccc--chhhhhh
Confidence 99887 566777888899999999999999999999987 9999999999999986432100000000000 1112 1
Q ss_pred HHHhccccccchhhhhhhhhcCChH-HHHHHHHHHhccCccc
Q 010380 407 ARTLVPRIRVVKGSGKAINYLTPPR-ILLALVTAWLRRGRWF 447 (512)
Q Consensus 407 A~~~l~r~~~~~~va~~v~~L~s~~-~~~~~~~~~~~~g~~~ 447 (512)
...+++|+..|+|+++++.||+++. ..+.++..+..||++.
T Consensus 215 ~~~p~~r~~~p~eva~~~~~l~s~~~~~~~tG~~i~vdgg~~ 256 (262)
T TIGR03325 215 SVLPIGRMPDAEEYTGAYVFFATRGDTVPATGAVLNYDGGMG 256 (262)
T ss_pred hcCCCCCCCChHHhhhheeeeecCCCcccccceEEEecCCee
Confidence 2346789999999999999999873 4566777777777763
|
Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase. |
| >PRK08643 acetoin reductase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-35 Score=289.89 Aligned_cols=251 Identities=20% Similarity=0.333 Sum_probs=207.7
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChh
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPA 256 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~ 256 (512)
+|+++||||++|||+++|++|+++|++|++++|+.+.+++...++.+ .+.++.++.+|++|++
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~-----------------~~~~~~~~~~Dl~~~~ 64 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSK-----------------DGGKAIAVKADVSDRD 64 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-----------------cCCeEEEEECCCCCHH
Confidence 68999999999999999999999999999999998887777766644 2457888999999999
Q ss_pred hHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCC
Q 010380 257 DVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSG 336 (512)
Q Consensus 257 sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~ 336 (512)
+++++++++.++++++|++|||||+.. ..++.+.+.+++++++++|+.+++.+++.+++.|++.+..++||++||. .+
T Consensus 65 ~~~~~~~~~~~~~~~id~vi~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~-~~ 142 (256)
T PRK08643 65 QVFAAVRQVVDTFGDLNVVVNNAGVAP-TTPIETITEEQFDKVYNINVGGVIWGIQAAQEAFKKLGHGGKIINATSQ-AG 142 (256)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCCC-CCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECcc-cc
Confidence 999999999999999999999999875 5778889999999999999999999999999999876456899999987 56
Q ss_pred CCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhh-cCCHHHHHHHhccccc
Q 010380 337 GSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNII-CELPETVARTLVPRIR 415 (512)
Q Consensus 337 ~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~-~~~pe~vA~~~l~r~~ 415 (512)
..+.++...|++||++++.|++.++.|+.++||+||+|+||+++|++................ ........+.+.+++.
T Consensus 143 ~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (256)
T PRK08643 143 VVGNPELAVYSSTKFAVRGLTQTAARDLASEGITVNAYAPGIVKTPMMFDIAHQVGENAGKPDEWGMEQFAKDITLGRLS 222 (256)
T ss_pred ccCCCCCchhHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCCCcChhhhHHHhhhccccCCCchHHHHHHhccCCCCCCc
Confidence 677888899999999999999999999999999999999999999987432110000000000 0011123345677888
Q ss_pred cchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 416 VVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 416 ~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
.|++++..+.||+++...+.++..+..||++
T Consensus 223 ~~~~va~~~~~L~~~~~~~~~G~~i~vdgg~ 253 (256)
T PRK08643 223 EPEDVANCVSFLAGPDSDYITGQTIIVDGGM 253 (256)
T ss_pred CHHHHHHHHHHHhCccccCccCcEEEeCCCe
Confidence 9999999999999998777777777777664
|
|
| >PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-36 Score=294.18 Aligned_cols=233 Identities=27% Similarity=0.420 Sum_probs=203.4
Q ss_pred CCC--ChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhhHHHH
Q 010380 184 GST--RGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPADVQKL 261 (512)
Q Consensus 184 Gas--sGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~sv~~~ 261 (512)
|++ +|||+++|++|+++|++|++++|+.+++++..+++.++. +.+ ++.||++|+++++++
T Consensus 1 g~~~s~GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~----------------~~~--~~~~D~~~~~~v~~~ 62 (241)
T PF13561_consen 1 GAGSSSGIGRAIARALAEEGANVILTDRNEEKLADALEELAKEY----------------GAE--VIQCDLSDEESVEAL 62 (241)
T ss_dssp STSSTSHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHT----------------TSE--EEESCTTSHHHHHHH
T ss_pred CCCCCCChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHc----------------CCc--eEeecCcchHHHHHH
Confidence 566 999999999999999999999999998877777776642 233 499999999999999
Q ss_pred HHHHHHHc-CCCcccccccccCCC---CCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCCC
Q 010380 262 SNFAVNEF-GSIDIWINNAGTNKG---FKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGG 337 (512)
Q Consensus 262 ~~~i~~~~-g~IDvLInnAG~~~~---~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~~ 337 (512)
++++.+.+ |+||+||||+|...+ ..++.+.+.++|++.+++|+.+++.++++++|+|.++ |+||++||. +..
T Consensus 63 ~~~~~~~~~g~iD~lV~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---gsii~iss~-~~~ 138 (241)
T PF13561_consen 63 FDEAVERFGGRIDILVNNAGISPPSNVEKPLLDLSEEDWDKTFDINVFSPFLLAQAALPLMKKG---GSIINISSI-AAQ 138 (241)
T ss_dssp HHHHHHHHCSSESEEEEEEESCTGGGTSSSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHE---EEEEEEEEG-GGT
T ss_pred HHHHHhhcCCCeEEEEecccccccccCCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhC---CCcccccch-hhc
Confidence 99999999 999999999998763 3678889999999999999999999999999988864 899999988 677
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHHHHhCC-CCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhcccccc
Q 010380 338 SSTPLTAVYGSTKCGLRQLQASLFKESKR-SKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPRIRV 416 (512)
Q Consensus 338 ~~~p~~~~Y~aSKaAl~~l~~sLa~El~~-~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~r~~~ 416 (512)
.+.+++..|+++|+|+++|+++|+.||++ +|||||+|+||+|+|++...... .+++ ........+++|+..
T Consensus 139 ~~~~~~~~y~~sKaal~~l~r~lA~el~~~~gIrVN~V~pG~i~t~~~~~~~~--~~~~------~~~~~~~~pl~r~~~ 210 (241)
T PF13561_consen 139 RPMPGYSAYSASKAALEGLTRSLAKELAPKKGIRVNAVSPGPIETPMTERIPG--NEEF------LEELKKRIPLGRLGT 210 (241)
T ss_dssp SBSTTTHHHHHHHHHHHHHHHHHHHHHGGHGTEEEEEEEESSBSSHHHHHHHT--HHHH------HHHHHHHSTTSSHBE
T ss_pred ccCccchhhHHHHHHHHHHHHHHHHHhccccCeeeeeecccceeccchhcccc--ccch------hhhhhhhhccCCCcC
Confidence 77899999999999999999999999999 99999999999999998532111 1111 234456788999999
Q ss_pred chhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 417 VKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 417 ~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
|+|++.++.||+++...+.++..+..||++
T Consensus 211 ~~evA~~v~fL~s~~a~~itG~~i~vDGG~ 240 (241)
T PF13561_consen 211 PEEVANAVLFLASDAASYITGQVIPVDGGF 240 (241)
T ss_dssp HHHHHHHHHHHHSGGGTTGTSEEEEESTTG
T ss_pred HHHHHHHHHHHhCccccCccCCeEEECCCc
Confidence 999999999999999989999998888876
|
... |
| >PRK12747 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-35 Score=288.03 Aligned_cols=240 Identities=23% Similarity=0.269 Sum_probs=196.7
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEE-cChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 175 AGPRNVVITGSTRGLGKALAREFLLSGDRVVVAS-RSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 175 l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~-R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
+++|+++||||++|||+++|++|+++|++|+++. |+.+++++..+++.+ .+.++..+.+|++
T Consensus 2 ~~~k~~lItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~D~~ 64 (252)
T PRK12747 2 LKGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQS-----------------NGGSAFSIGANLE 64 (252)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHHh-----------------cCCceEEEecccC
Confidence 4689999999999999999999999999999875 566666666666543 2456778999999
Q ss_pred ChhhHHHHHHHHHHH----cC--CCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeE
Q 010380 254 EPADVQKLSNFAVNE----FG--SIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHI 327 (512)
Q Consensus 254 d~~sv~~~~~~i~~~----~g--~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~I 327 (512)
|.+++..+++++.+. ++ ++|+||||||+.. ..++.+.+.++|++++++|+.++++++++++|.|++ .|+|
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~g~~~id~lv~~Ag~~~-~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~---~g~i 140 (252)
T PRK12747 65 SLHGVEALYSSLDNELQNRTGSTKFDILINNAGIGP-GAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRD---NSRI 140 (252)
T ss_pred CHHHHHHHHHHHHHHhhhhcCCCCCCEEEECCCcCC-CCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHhhc---CCeE
Confidence 999999999888753 34 8999999999865 567888999999999999999999999999999975 3799
Q ss_pred EeecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHH
Q 010380 328 FNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVA 407 (512)
Q Consensus 328 V~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA 407 (512)
|++||. ++..+.++...|++||+|+++++++++.|+.++||+||+|+||+|+|+|....... +. .+...
T Consensus 141 v~isS~-~~~~~~~~~~~Y~~sKaa~~~~~~~la~e~~~~girvn~v~Pg~v~t~~~~~~~~~--~~--------~~~~~ 209 (252)
T PRK12747 141 INISSA-ATRISLPDFIAYSMTKGAINTMTFTLAKQLGARGITVNAILPGFIKTDMNAELLSD--PM--------MKQYA 209 (252)
T ss_pred EEECCc-ccccCCCCchhHHHHHHHHHHHHHHHHHHHhHcCCEEEEEecCCccCchhhhcccC--HH--------HHHHH
Confidence 999998 67778888999999999999999999999999999999999999999986432110 00 01111
Q ss_pred H--HhccccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 408 R--TLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 408 ~--~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
. .+++++..|++++.++.||+++...+.++..+..+|++
T Consensus 210 ~~~~~~~~~~~~~dva~~~~~l~s~~~~~~~G~~i~vdgg~ 250 (252)
T PRK12747 210 TTISAFNRLGEVEDIADTAAFLASPDSRWVTGQLIDVSGGS 250 (252)
T ss_pred HhcCcccCCCCHHHHHHHHHHHcCccccCcCCcEEEecCCc
Confidence 1 24678889999999999999987666666555555543
|
|
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=298.03 Aligned_cols=224 Identities=27% Similarity=0.383 Sum_probs=193.4
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
++.+|++|||||++|||+++|++|+++|++|++++|++++++++.+++++ .+.++.++.+|++
T Consensus 4 ~l~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~-----------------~g~~~~~~~~Dv~ 66 (330)
T PRK06139 4 PLHGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRA-----------------LGAEVLVVPTDVT 66 (330)
T ss_pred CCCCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh-----------------cCCcEEEEEeeCC
Confidence 57889999999999999999999999999999999999998888877765 3567888999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
|+++++++++++.+.++++|+||||||+.. ..++.+.+.+++++++++|+.|++++++.++|+|+++ +.|+||+++|.
T Consensus 67 d~~~v~~~~~~~~~~~g~iD~lVnnAG~~~-~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~~~~~-~~g~iV~isS~ 144 (330)
T PRK06139 67 DADQVKALATQAASFGGRIDVWVNNVGVGA-VGRFEETPIEAHEQVIQTNLIGYMRDAHAALPIFKKQ-GHGIFINMISL 144 (330)
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEECCCcCC-CCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHc-CCCEEEEEcCh
Confidence 999999999999999999999999999876 6788999999999999999999999999999999987 56899999987
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCC-CeEEEEEeCCcccCCcccCCcchhhhhh-hhhhcCCHHHHHHHhc
Q 010380 334 GSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRS-KVGVHTASPGMVLTDLLLSGSTIQNKQM-FNIICELPETVARTLV 411 (512)
Q Consensus 334 ~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~-GIrVn~V~PG~V~T~~~~~~~~~~~~~~-~~~~~~~pe~vA~~~l 411 (512)
.+..+.|+.+.|++||+|+.+|+++|+.|+.+. ||+|++|+||+|+||+............ ......+|+++|+.++
T Consensus 145 -~~~~~~p~~~~Y~asKaal~~~~~sL~~El~~~~gI~V~~v~Pg~v~T~~~~~~~~~~~~~~~~~~~~~~pe~vA~~il 223 (330)
T PRK06139 145 -GGFAAQPYAAAYSASKFGLRGFSEALRGELADHPDIHVCDVYPAFMDTPGFRHGANYTGRRLTPPPPVYDPRRVAKAVV 223 (330)
T ss_pred -hhcCCCCCchhHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecCCccCcccccccccccccccCCCCCCCHHHHHHHHH
Confidence 577888999999999999999999999999874 9999999999999998754222111111 1122347999999887
Q ss_pred cccccc
Q 010380 412 PRIRVV 417 (512)
Q Consensus 412 ~r~~~~ 417 (512)
..+..+
T Consensus 224 ~~~~~~ 229 (330)
T PRK06139 224 RLADRP 229 (330)
T ss_pred HHHhCC
Confidence 665544
|
|
| >PRK06398 aldose dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-35 Score=290.73 Aligned_cols=238 Identities=20% Similarity=0.284 Sum_probs=197.7
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
++++|+++||||++|||+++|++|+++|++|++++|+.+.. .++.++.||++
T Consensus 3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~~~----------------------------~~~~~~~~D~~ 54 (258)
T PRK06398 3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEPSY----------------------------NDVDYFKVDVS 54 (258)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCcccc----------------------------CceEEEEccCC
Confidence 57899999999999999999999999999999999985421 25778999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
|+++++++++++.++++++|+||||||+.. ..++.+.+.++|++++++|+.|++.++++++|+|+++ +.|+||++||.
T Consensus 55 ~~~~i~~~~~~~~~~~~~id~li~~Ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~g~iv~isS~ 132 (258)
T PRK06398 55 NKEQVIKGIDYVISKYGRIDILVNNAGIES-YGAIHAVEEDEWDRIINVNVNGIFLMSKYTIPYMLKQ-DKGVIINIASV 132 (258)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCC-CCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCeEEEEeCcc
Confidence 999999999999999999999999999876 6788899999999999999999999999999999876 56899999997
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchh---hhh-hhhhhcCCHHHHHHH
Q 010380 334 GSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQ---NKQ-MFNIICELPETVART 409 (512)
Q Consensus 334 ~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~---~~~-~~~~~~~~pe~vA~~ 409 (512)
++..+.++...|++||+|+++|+++++.|+.+. |+||+|+||+|+|++........ ... .... .-+.....
T Consensus 133 -~~~~~~~~~~~Y~~sKaal~~~~~~la~e~~~~-i~vn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 207 (258)
T PRK06398 133 -QSFAVTRNAAAYVTSKHAVLGLTRSIAVDYAPT-IRCVAVCPGSIRTPLLEWAAELEVGKDPEHVERK---IREWGEMH 207 (258)
T ss_pred -hhccCCCCCchhhhhHHHHHHHHHHHHHHhCCC-CEEEEEecCCccchHHhhhhhccccCChhhhHHH---HHhhhhcC
Confidence 567788899999999999999999999999876 99999999999999864321100 000 0000 00111234
Q ss_pred hccccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 410 LVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 410 ~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
+++++..|+|+++++.||+++...+.++..+..||+.
T Consensus 208 ~~~~~~~p~eva~~~~~l~s~~~~~~~G~~i~~dgg~ 244 (258)
T PRK06398 208 PMKRVGKPEEVAYVVAFLASDLASFITGECVTVDGGL 244 (258)
T ss_pred CcCCCcCHHHHHHHHHHHcCcccCCCCCcEEEECCcc
Confidence 5678889999999999999987666666666666654
|
|
| >PRK06172 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=285.21 Aligned_cols=247 Identities=26% Similarity=0.357 Sum_probs=205.8
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
+.+++|+++||||++|||.++|++|+++|++|++++|+.+++++..+++.+ .+.++.++.+|+
T Consensus 3 ~~l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~-----------------~~~~~~~~~~D~ 65 (253)
T PRK06172 3 MTFSGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIRE-----------------AGGEALFVACDV 65 (253)
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHh-----------------cCCceEEEEcCC
Confidence 357899999999999999999999999999999999999887777766644 345788999999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|.+++.++++.+.+.++++|++|||||......++.+.+.+++++++++|+.+++.++++++|.|.++ +.++||++||
T Consensus 66 ~~~~~i~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~ii~~sS 144 (253)
T PRK06172 66 TRDAEVKALVEQTIAAYGRLDYAFNNAGIEIEQGRLAEGSEAEFDAIMGVNVKGVWLCMKYQIPLMLAQ-GGGAIVNTAS 144 (253)
T ss_pred CCHHHHHHHHHHHHHHhCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCcEEEEECc
Confidence 999999999999999999999999999986534557888999999999999999999999999999876 4689999998
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhcc
Q 010380 333 AGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVP 412 (512)
Q Consensus 333 ~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~ 412 (512)
. .+..+.++...|++||+|+++|+++++.|+.++||+|++|+||+|+|++........ ..... ......++.
T Consensus 145 ~-~~~~~~~~~~~Y~~sKaa~~~~~~~la~e~~~~~i~v~~i~PG~v~t~~~~~~~~~~-~~~~~------~~~~~~~~~ 216 (253)
T PRK06172 145 V-AGLGAAPKMSIYAASKHAVIGLTKSAAIEYAKKGIRVNAVCPAVIDTDMFRRAYEAD-PRKAE------FAAAMHPVG 216 (253)
T ss_pred h-hhccCCCCCchhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCCccChhhhhhcccC-hHHHH------HHhccCCCC
Confidence 7 567788899999999999999999999999999999999999999999865321100 00000 011234567
Q ss_pred ccccchhhhhhhhhcCChHHHHHHHHHHhccCc
Q 010380 413 RIRVVKGSGKAINYLTPPRILLALVTAWLRRGR 445 (512)
Q Consensus 413 r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~ 445 (512)
++..|++++..+.||+++...+.++..+..||+
T Consensus 217 ~~~~p~~ia~~~~~l~~~~~~~~~G~~i~~dgg 249 (253)
T PRK06172 217 RIGKVEEVASAVLYLCSDGASFTTGHALMVDGG 249 (253)
T ss_pred CccCHHHHHHHHHHHhCccccCcCCcEEEECCC
Confidence 888999999999999998765555555555544
|
|
| >TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=284.59 Aligned_cols=244 Identities=22% Similarity=0.305 Sum_probs=200.8
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
++++|+++||||++|||.++|++|+++|++|++++|+.. ++..+.+.+ .+.++.++.+|++
T Consensus 2 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~~--~~~~~~~~~-----------------~~~~~~~~~~D~~ 62 (248)
T TIGR01832 2 SLEGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSEP--SETQQQVEA-----------------LGRRFLSLTADLS 62 (248)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCchH--HHHHHHHHh-----------------cCCceEEEECCCC
Confidence 578999999999999999999999999999999999752 233333332 2356889999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
|++++.++++++.+.++++|++|||||... ..++.+.+.++|++++++|+.+++.++++++|.|.+++..|+||++||.
T Consensus 63 ~~~~~~~~~~~~~~~~~~~d~li~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~ 141 (248)
T TIGR01832 63 DIEAIKALVDSAVEEFGHIDILVNNAGIIR-RADAEEFSEKDWDDVMNVNLKSVFFLTQAAAKHFLKQGRGGKIINIASM 141 (248)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCC-CCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEecH
Confidence 999999999999999999999999999876 4677888999999999999999999999999999876436899999987
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhccc
Q 010380 334 GSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPR 413 (512)
Q Consensus 334 ~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~r 413 (512)
.+..+.+....|++||+|+++++++++.|+.++||+||+|+||+|+|++....... .. . ..+...+.+.++
T Consensus 142 -~~~~~~~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~~~~-~~-~------~~~~~~~~~~~~ 212 (248)
T TIGR01832 142 -LSFQGGIRVPSYTASKHGVAGLTKLLANEWAAKGINVNAIAPGYMATNNTQALRAD-ED-R------NAAILERIPAGR 212 (248)
T ss_pred -HhccCCCCCchhHHHHHHHHHHHHHHHHHhCccCcEEEEEEECcCcCcchhccccC-hH-H------HHHHHhcCCCCC
Confidence 56667778889999999999999999999999999999999999999986432110 00 0 011223345678
Q ss_pred cccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 414 IRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 414 ~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
...|+++++++.||+++...+.++.....||++
T Consensus 213 ~~~~~dva~~~~~l~s~~~~~~~G~~i~~dgg~ 245 (248)
T TIGR01832 213 WGTPDDIGGPAVFLASSASDYVNGYTLAVDGGW 245 (248)
T ss_pred CcCHHHHHHHHHHHcCccccCcCCcEEEeCCCE
Confidence 889999999999999987666666666666654
|
This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation. |
| >PRK06125 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-35 Score=288.14 Aligned_cols=247 Identities=23% Similarity=0.239 Sum_probs=202.7
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
+++++|+++||||++|||+++|++|+++|++|++++|+.+++++..+++.+. .+.++.++.+|+
T Consensus 3 ~~~~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~----------------~~~~~~~~~~D~ 66 (259)
T PRK06125 3 LHLAGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAA----------------HGVDVAVHALDL 66 (259)
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhh----------------cCCceEEEEecC
Confidence 3578999999999999999999999999999999999998887777776542 235688899999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|+++++++++. ++++|++|||||... ..++.+.+.++|++++++|+.++++++++++|.|.++ +.|+||++||
T Consensus 67 ~~~~~~~~~~~~----~g~id~lv~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~g~iv~iss 140 (259)
T PRK06125 67 SSPEAREQLAAE----AGDIDILVNNAGAIP-GGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKAR-GSGVIVNVIG 140 (259)
T ss_pred CCHHHHHHHHHH----hCCCCEEEECCCCCC-CCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCcEEEEecC
Confidence 999999888753 589999999999875 5788899999999999999999999999999999876 4679999998
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHH----HHHH
Q 010380 333 AGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPE----TVAR 408 (512)
Q Consensus 333 ~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe----~vA~ 408 (512)
. .+..+.+.+..|+++|+|+++|+++++.|+.++||+||+|+||+++|++........... .+ .+++ ....
T Consensus 141 ~-~~~~~~~~~~~y~ask~al~~~~~~la~e~~~~gi~v~~i~PG~v~t~~~~~~~~~~~~~---~~-~~~~~~~~~~~~ 215 (259)
T PRK06125 141 A-AGENPDADYICGSAGNAALMAFTRALGGKSLDDGVRVVGVNPGPVATDRMLTLLKGRARA---EL-GDESRWQELLAG 215 (259)
T ss_pred c-cccCCCCCchHhHHHHHHHHHHHHHHHHHhCccCeEEEEEecCccccHHHHHHHHhhhhc---cc-CCHHHHHHHhcc
Confidence 7 566777788899999999999999999999999999999999999999753211100000 00 0111 1223
Q ss_pred HhccccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 409 TLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 409 ~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
.+++++..|+|+++++.||+++...+.++..+..+|++
T Consensus 216 ~~~~~~~~~~~va~~~~~l~~~~~~~~~G~~i~vdgg~ 253 (259)
T PRK06125 216 LPLGRPATPEEVADLVAFLASPRSGYTSGTVVTVDGGI 253 (259)
T ss_pred CCcCCCcCHHHHHHHHHHHcCchhccccCceEEecCCe
Confidence 45678889999999999999988777777776666654
|
|
| >PRK06128 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=294.26 Aligned_cols=244 Identities=22% Similarity=0.286 Sum_probs=200.7
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChh--hHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEcc
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSE--SVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACD 251 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~--~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~D 251 (512)
++++|++|||||++|||+++|++|+++|++|+++.++.+ ..++..+.+.+ .+.++.++.||
T Consensus 52 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~D 114 (300)
T PRK06128 52 RLQGRKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQA-----------------EGRKAVALPGD 114 (300)
T ss_pred ccCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHH-----------------cCCeEEEEecC
Confidence 478899999999999999999999999999999887643 33344444433 34578899999
Q ss_pred CCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeec
Q 010380 252 VCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD 331 (512)
Q Consensus 252 ltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vS 331 (512)
++|.++++++++++.+.++++|+||||||......++.+.+.++|++++++|+.|+++++++++|+|.+ +++||++|
T Consensus 115 l~~~~~v~~~~~~~~~~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~---~~~iv~~s 191 (300)
T PRK06128 115 LKDEAFCRQLVERAVKELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPP---GASIINTG 191 (300)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCc---CCEEEEEC
Confidence 999999999999999999999999999998653567889999999999999999999999999999964 47999999
Q ss_pred CCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhc
Q 010380 332 GAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLV 411 (512)
Q Consensus 332 S~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l 411 (512)
|. .+..+.++...|++||+|+++|+++|+.|+.++||+||+|+||+|+|++...... .. ... ++.....++
T Consensus 192 S~-~~~~~~~~~~~Y~asK~a~~~~~~~la~el~~~gI~v~~v~PG~i~t~~~~~~~~-~~-~~~------~~~~~~~p~ 262 (300)
T PRK06128 192 SI-QSYQPSPTLLDYASTKAAIVAFTKALAKQVAEKGIRVNAVAPGPVWTPLQPSGGQ-PP-EKI------PDFGSETPM 262 (300)
T ss_pred Cc-cccCCCCCchhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEECcCcCCCcccCCC-CH-HHH------HHHhcCCCC
Confidence 98 5677788889999999999999999999999999999999999999998643110 01 100 111234567
Q ss_pred cccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 412 PRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 412 ~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
+++..|+|++.++.||+++...+.++..+..+|++
T Consensus 263 ~r~~~p~dva~~~~~l~s~~~~~~~G~~~~v~gg~ 297 (300)
T PRK06128 263 KRPGQPVEMAPLYVLLASQESSYVTGEVFGVTGGL 297 (300)
T ss_pred CCCcCHHHHHHHHHHHhCccccCccCcEEeeCCCE
Confidence 88999999999999999987666666666555543
|
|
| >PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=285.94 Aligned_cols=244 Identities=28% Similarity=0.409 Sum_probs=197.4
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
+++.+|+++||||++|||+++|++|+++|++|++++++.+.. .+++.+ .++.++.+|+
T Consensus 3 ~~l~~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~---~~~l~~-------------------~~~~~~~~Dl 60 (255)
T PRK06463 3 MRFKGKVALITGGTRGIGRAIAEAFLREGAKVAVLYNSAENE---AKELRE-------------------KGVFTIKCDV 60 (255)
T ss_pred CCcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcHHH---HHHHHh-------------------CCCeEEEecC
Confidence 457899999999999999999999999999999887765432 223322 1367899999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|+++++++++++.+.++++|+||||||+.. ..++.+.+.++|++++++|+.+++++++.++|.|+++ +.|+||++||
T Consensus 61 ~~~~~~~~~~~~~~~~~~~id~li~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~-~~g~iv~isS 138 (255)
T PRK06463 61 GNRDQVKKSKEVVEKEFGRVDVLVNNAGIMY-LMPFEEFDEEKYNKMIKINLNGAIYTTYEFLPLLKLS-KNGAIVNIAS 138 (255)
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCcCC-CCChhhCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhc-CCcEEEEEcC
Confidence 9999999999999999999999999999875 5678889999999999999999999999999999866 5789999998
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhh-hhhhhhhcCCHHHHHHHhc
Q 010380 333 AGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQN-KQMFNIICELPETVARTLV 411 (512)
Q Consensus 333 ~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~-~~~~~~~~~~pe~vA~~~l 411 (512)
..+...+.++.+.|++||+|+++|+++++.|+.+.||+||+|+||+|+|++......... .... .....+.++
T Consensus 139 ~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~------~~~~~~~~~ 212 (255)
T PRK06463 139 NAGIGTAAEGTTFYAITKAGIIILTRRLAFELGKYGIRVNAVAPGWVETDMTLSGKSQEEAEKLR------ELFRNKTVL 212 (255)
T ss_pred HHhCCCCCCCccHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCCCCchhhcccCccchHHHH------HHHHhCCCc
Confidence 733223456788999999999999999999999999999999999999998643211110 0000 111223456
Q ss_pred cccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 412 PRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 412 ~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
+++..|++++..+.||+++...+.++..+..+|+.
T Consensus 213 ~~~~~~~~va~~~~~l~s~~~~~~~G~~~~~dgg~ 247 (255)
T PRK06463 213 KTTGKPEDIANIVLFLASDDARYITGQVIVADGGR 247 (255)
T ss_pred CCCcCHHHHHHHHHHHcChhhcCCCCCEEEECCCe
Confidence 78889999999999999987766666666666654
|
|
| >PRK07831 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=284.66 Aligned_cols=246 Identities=25% Similarity=0.361 Sum_probs=205.1
Q ss_pred CCCCCCEEEEECCCC-hHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEcc
Q 010380 173 CKAGPRNVVITGSTR-GLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACD 251 (512)
Q Consensus 173 ~~l~gk~vLVTGass-GIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~D 251 (512)
..+.+|+++||||++ |||+++|+.|+++|++|++++|+.+++++..+++++.. ...++.++++|
T Consensus 13 ~~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~D 77 (262)
T PRK07831 13 GLLAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAEL---------------GLGRVEAVVCD 77 (262)
T ss_pred cccCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhc---------------CCceEEEEEcc
Confidence 346789999999985 99999999999999999999999888877777665421 12468889999
Q ss_pred CCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeec
Q 010380 252 VCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD 331 (512)
Q Consensus 252 ltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vS 331 (512)
++|+++++++++++.+.+|++|+||||||... ..++.+.+.++|++.+++|+.+++.+++.++|.|+++...|+||+++
T Consensus 78 l~~~~~~~~~~~~~~~~~g~id~li~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~s 156 (262)
T PRK07831 78 VTSEAQVDALIDAAVERLGRLDVLVNNAGLGG-QTPVVDMTDDEWSRVLDVTLTGTFRATRAALRYMRARGHGGVIVNNA 156 (262)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCCCCC-CCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEeC
Confidence 99999999999999999999999999999865 57788999999999999999999999999999998764368999998
Q ss_pred CCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhc
Q 010380 332 GAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLV 411 (512)
Q Consensus 332 S~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l 411 (512)
|. .+..+.++...|++||+|+++|+++++.|++++||+||+|+||+++|++...... .... .....+.++
T Consensus 157 s~-~~~~~~~~~~~Y~~sKaal~~~~~~la~e~~~~gI~v~~i~Pg~~~t~~~~~~~~---~~~~------~~~~~~~~~ 226 (262)
T PRK07831 157 SV-LGWRAQHGQAHYAAAKAGVMALTRCSALEAAEYGVRINAVAPSIAMHPFLAKVTS---AELL------DELAAREAF 226 (262)
T ss_pred ch-hhcCCCCCCcchHHHHHHHHHHHHHHHHHhCccCeEEEEEeeCCccCcccccccC---HHHH------HHHHhcCCC
Confidence 87 5667778899999999999999999999999999999999999999998643211 1111 011123457
Q ss_pred cccccchhhhhhhhhcCChHHHHHHHHHHhccC
Q 010380 412 PRIRVVKGSGKAINYLTPPRILLALVTAWLRRG 444 (512)
Q Consensus 412 ~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g 444 (512)
++...|+++++.+.||+++...+.++..+..++
T Consensus 227 ~r~~~p~~va~~~~~l~s~~~~~itG~~i~v~~ 259 (262)
T PRK07831 227 GRAAEPWEVANVIAFLASDYSSYLTGEVVSVSS 259 (262)
T ss_pred CCCcCHHHHHHHHHHHcCchhcCcCCceEEeCC
Confidence 888999999999999999887665555554444
|
|
| >KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-36 Score=271.61 Aligned_cols=240 Identities=22% Similarity=0.262 Sum_probs=212.0
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
.++.|++++|||+..|||+++++.|++.|++|+.++|+++.+..+.++. ...+.++..|+
T Consensus 3 t~laG~~vlvTgagaGIG~~~v~~La~aGA~ViAvaR~~a~L~sLV~e~--------------------p~~I~Pi~~Dl 62 (245)
T KOG1207|consen 3 TSLAGVIVLVTGAGAGIGKEIVLSLAKAGAQVIAVARNEANLLSLVKET--------------------PSLIIPIVGDL 62 (245)
T ss_pred ccccceEEEeecccccccHHHHHHHHhcCCEEEEEecCHHHHHHHHhhC--------------------CcceeeeEecc
Confidence 3678999999999999999999999999999999999999988777663 34588999999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
++++.+.+.+. ..+++|.||||||+.. ..|+.+++.+++++.|++|+.++++++|...+-+..+..+|.|||+||
T Consensus 63 s~wea~~~~l~----~v~pidgLVNNAgvA~-~~pf~eiT~q~fDr~F~VNvravi~v~Q~var~lv~R~~~GaIVNvSS 137 (245)
T KOG1207|consen 63 SAWEALFKLLV----PVFPIDGLVNNAGVAT-NHPFGEITQQSFDRTFAVNVRAVILVAQLVARNLVDRQIKGAIVNVSS 137 (245)
T ss_pred cHHHHHHHhhc----ccCchhhhhccchhhh-cchHHHHhHHhhcceeeeeeeeeeeHHHHHHHhhhhccCCceEEEecc
Confidence 99888777654 3479999999999988 789999999999999999999999999998888887777899999999
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhcc
Q 010380 333 AGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVP 412 (512)
Q Consensus 333 ~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~ 412 (512)
. ++..+..+...||++|+|+++++++|+.|+++++||||+|.|-.|-|+|-.+.+....+ .-...++.+++
T Consensus 138 q-as~R~~~nHtvYcatKaALDmlTk~lAlELGp~kIRVNsVNPTVVmT~MG~dnWSDP~K--------~k~mL~riPl~ 208 (245)
T KOG1207|consen 138 Q-ASIRPLDNHTVYCATKAALDMLTKCLALELGPQKIRVNSVNPTVVMTDMGRDNWSDPDK--------KKKMLDRIPLK 208 (245)
T ss_pred h-hcccccCCceEEeecHHHHHHHHHHHHHhhCcceeEeeccCCeEEEecccccccCCchh--------ccchhhhCchh
Confidence 8 67788889999999999999999999999999999999999999999998765433222 22346788999
Q ss_pred ccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 413 RIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 413 r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
|+..++++.+++.||.++...+.++..+..+|++
T Consensus 209 rFaEV~eVVnA~lfLLSd~ssmttGstlpveGGf 242 (245)
T KOG1207|consen 209 RFAEVDEVVNAVLFLLSDNSSMTTGSTLPVEGGF 242 (245)
T ss_pred hhhHHHHHHhhheeeeecCcCcccCceeeecCCc
Confidence 9999999999999999999988888888777765
|
|
| >PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=285.25 Aligned_cols=239 Identities=20% Similarity=0.251 Sum_probs=196.9
Q ss_pred CCCCCEEEEECCC--ChHHHHHHHHHHHCCCEEEEEEcC-----------hhhHHHHHHHHHHHHhhhhhhcCCCCcccc
Q 010380 174 KAGPRNVVITGST--RGLGKALAREFLLSGDRVVVASRS-----------SESVRMTVTELEENLKEGMMAAGGSSKKNL 240 (512)
Q Consensus 174 ~l~gk~vLVTGas--sGIG~aiA~~La~~Ga~Vvl~~R~-----------~~~l~~~~~el~~~~~~~~~~~g~~~~~~~ 240 (512)
++++|+++||||+ +|||+++|++|+++|++|++++|+ .++..+..+++.+
T Consensus 3 ~l~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 65 (256)
T PRK12859 3 QLKNKVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLK----------------- 65 (256)
T ss_pred CcCCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHh-----------------
Confidence 4789999999999 499999999999999999998643 1222223333332
Q ss_pred cCceEEEEEccCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHh
Q 010380 241 VHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRD 320 (512)
Q Consensus 241 ~g~~v~~v~~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~ 320 (512)
.+.++.++.+|++|+++++++++++.+.+|++|+||||||... ..++.+.+.++|++++++|+.+++.++++++|.|.+
T Consensus 66 ~g~~~~~~~~D~~~~~~i~~~~~~~~~~~g~id~li~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~ 144 (256)
T PRK12859 66 NGVKVSSMELDLTQNDAPKELLNKVTEQLGYPHILVNNAAYST-NNDFSNLTAEELDKHYMVNVRATTLLSSQFARGFDK 144 (256)
T ss_pred cCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCCC-CCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Confidence 3567889999999999999999999999999999999999876 577889999999999999999999999999999987
Q ss_pred CCCCCeEEeecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhc
Q 010380 321 QPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIIC 400 (512)
Q Consensus 321 ~~~~g~IV~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~ 400 (512)
+ +.|+||++||. ++..+.+++..|++||+|+++|+++++.|+.++||+||+|+||+++|++.... ....
T Consensus 145 ~-~~g~iv~isS~-~~~~~~~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~PG~i~t~~~~~~---~~~~------ 213 (256)
T PRK12859 145 K-SGGRIINMTSG-QFQGPMVGELAYAATKGAIDALTSSLAAEVAHLGITVNAINPGPTDTGWMTEE---IKQG------ 213 (256)
T ss_pred c-CCeEEEEEccc-ccCCCCCCchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEEccccCCCCCHH---HHHH------
Confidence 6 47899999997 67778889999999999999999999999999999999999999999974210 0000
Q ss_pred CCHHHHHHHhccccccchhhhhhhhhcCChHHHHHHHHHHhccCc
Q 010380 401 ELPETVARTLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGR 445 (512)
Q Consensus 401 ~~pe~vA~~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~ 445 (512)
.....+++++..|+|+++.+.||+++...+.++..+..||+
T Consensus 214 ----~~~~~~~~~~~~~~d~a~~~~~l~s~~~~~~~G~~i~~dgg 254 (256)
T PRK12859 214 ----LLPMFPFGRIGEPKDAARLIKFLASEEAEWITGQIIHSEGG 254 (256)
T ss_pred ----HHhcCCCCCCcCHHHHHHHHHHHhCccccCccCcEEEeCCC
Confidence 01123456788899999999999988665556655555554
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=283.51 Aligned_cols=245 Identities=22% Similarity=0.272 Sum_probs=206.3
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
+++++|+++||||++|||+++|++|+++|++|++++|+++++++..+++.+ .+.++.++.+|+
T Consensus 6 ~~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~-----------------~~~~~~~~~~D~ 68 (255)
T PRK07523 6 FDLTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKG-----------------QGLSAHALAFDV 68 (255)
T ss_pred cCCCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHh-----------------cCceEEEEEccC
Confidence 357899999999999999999999999999999999998887776666644 345788999999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|+++++++++.+.+.++++|+||||||... ..++.+.+.++|++++++|+.+++++++++.+.|.++ +.|+||++||
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~d~li~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~g~iv~iss 146 (255)
T PRK07523 69 TDHDAVRAAIDAFEAEIGPIDILVNNAGMQF-RTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIAR-GAGKIINIAS 146 (255)
T ss_pred CCHHHHHHHHHHHHHhcCCCCEEEECCCCCC-CCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHh-CCeEEEEEcc
Confidence 9999999999999999999999999999876 5788889999999999999999999999999999876 5689999998
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhcc
Q 010380 333 AGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVP 412 (512)
Q Consensus 333 ~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~ 412 (512)
. .+..+.++...|+++|++++.++++++.|++++||+||+|+||+++|++....... ... .+......+++
T Consensus 147 ~-~~~~~~~~~~~y~~sK~a~~~~~~~~a~e~~~~gi~v~~i~pg~~~t~~~~~~~~~--~~~------~~~~~~~~~~~ 217 (255)
T PRK07523 147 V-QSALARPGIAPYTATKGAVGNLTKGMATDWAKHGLQCNAIAPGYFDTPLNAALVAD--PEF------SAWLEKRTPAG 217 (255)
T ss_pred c-hhccCCCCCccHHHHHHHHHHHHHHHHHHhhHhCeEEEEEEECcccCchhhhhccC--HHH------HHHHHhcCCCC
Confidence 7 56677888999999999999999999999999999999999999999986432110 001 01122234577
Q ss_pred ccccchhhhhhhhhcCChHHHHHHHHHHhccCc
Q 010380 413 RIRVVKGSGKAINYLTPPRILLALVTAWLRRGR 445 (512)
Q Consensus 413 r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~ 445 (512)
++..|+|++.++.||+++...+.++..+..+|+
T Consensus 218 ~~~~~~dva~~~~~l~~~~~~~~~G~~i~~~gg 250 (255)
T PRK07523 218 RWGKVEELVGACVFLASDASSFVNGHVLYVDGG 250 (255)
T ss_pred CCcCHHHHHHHHHHHcCchhcCccCcEEEECCC
Confidence 889999999999999998765555555554443
|
|
| >PRK08936 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-34 Score=283.33 Aligned_cols=246 Identities=25% Similarity=0.347 Sum_probs=204.0
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcCh-hhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSS-ESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~-~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
++++|+++||||++|||+++|++|+++|++|++++|+. +..+...+++.. .+.++.++.+|+
T Consensus 4 ~~~~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~~~~~~~~~~~l~~-----------------~~~~~~~~~~Dl 66 (261)
T PRK08936 4 DLEGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEEANDVAEEIKK-----------------AGGEAIAVKGDV 66 (261)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHH-----------------cCCeEEEEEecC
Confidence 57899999999999999999999999999999998854 445555555543 345788899999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|+++++++++.+.+.++++|++|||||... ..++.+.+.++|++++++|+.+++.+++.++|.|.+++..|+||++||
T Consensus 67 ~~~~~i~~~~~~~~~~~g~id~lv~~ag~~~-~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~g~iv~~sS 145 (261)
T PRK08936 67 TVESDVVNLIQTAVKEFGTLDVMINNAGIEN-AVPSHEMSLEDWNKVINTNLTGAFLGSREAIKYFVEHDIKGNIINMSS 145 (261)
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCCCC-CCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcc
Confidence 9999999999999999999999999999876 567888999999999999999999999999999988755689999999
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhcc
Q 010380 333 AGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVP 412 (512)
Q Consensus 333 ~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~ 412 (512)
. .+..+.++...|+++|+|+.+|+++++.|+.+.||+||+|+||+|+|++....... .... .......+++
T Consensus 146 ~-~~~~~~~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~~~~--~~~~------~~~~~~~~~~ 216 (261)
T PRK08936 146 V-HEQIPWPLFVHYAASKGGVKLMTETLAMEYAPKGIRVNNIGPGAINTPINAEKFAD--PKQR------ADVESMIPMG 216 (261)
T ss_pred c-cccCCCCCCcccHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECcCCCCccccccCC--HHHH------HHHHhcCCCC
Confidence 7 56778889999999999999999999999999999999999999999986432110 0000 0111233567
Q ss_pred ccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 413 RIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 413 r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
++..|++++..+.||+++...+.++..+..||+.
T Consensus 217 ~~~~~~~va~~~~~l~s~~~~~~~G~~i~~d~g~ 250 (261)
T PRK08936 217 YIGKPEEIAAVAAWLASSEASYVTGITLFADGGM 250 (261)
T ss_pred CCcCHHHHHHHHHHHcCcccCCccCcEEEECCCc
Confidence 8889999999999999987666666655555543
|
|
| >PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-34 Score=281.42 Aligned_cols=246 Identities=21% Similarity=0.340 Sum_probs=205.4
Q ss_pred ccCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEc
Q 010380 171 EHCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIAC 250 (512)
Q Consensus 171 ~~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~ 250 (512)
+.+.+++|+++||||++|||++++++|+++|++|++++|+.+.++...+++.. .+.++.++.+
T Consensus 5 ~~~~l~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~-----------------~~~~~~~~~~ 67 (255)
T PRK06113 5 DNLRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQ-----------------LGGQAFACRC 67 (255)
T ss_pred cccCcCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHh-----------------cCCcEEEEEc
Confidence 34568899999999999999999999999999999999998888777666644 3457888999
Q ss_pred cCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEee
Q 010380 251 DVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNM 330 (512)
Q Consensus 251 Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~v 330 (512)
|++|.++++++++.+.+.++++|++|||||... ..++ +.+.+++++.+++|+.++++++++++|.|.+. +.++||++
T Consensus 68 D~~~~~~i~~~~~~~~~~~~~~d~li~~ag~~~-~~~~-~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~iv~i 144 (255)
T PRK06113 68 DITSEQELSALADFALSKLGKVDILVNNAGGGG-PKPF-DMPMADFRRAYELNVFSFFHLSQLVAPEMEKN-GGGVILTI 144 (255)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCC-CCCC-CCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhc-CCcEEEEE
Confidence 999999999999999999999999999999865 3444 68899999999999999999999999999865 46799999
Q ss_pred cCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHh
Q 010380 331 DGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTL 410 (512)
Q Consensus 331 SS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~ 410 (512)
||. ++..+.++...|++||+|+++|+++++.|+.+.||+||+|+||+++|++....... ... .+.....+
T Consensus 145 sS~-~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pg~~~t~~~~~~~~~---~~~------~~~~~~~~ 214 (255)
T PRK06113 145 TSM-AAENKNINMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSVITP---EIE------QKMLQHTP 214 (255)
T ss_pred ecc-cccCCCCCcchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEecccccccccccccCH---HHH------HHHHhcCC
Confidence 997 56777888899999999999999999999999999999999999999986432110 000 11122345
Q ss_pred ccccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 411 VPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 411 l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
+.++..|+|+++++.||+++...+.++..+..+|++
T Consensus 215 ~~~~~~~~d~a~~~~~l~~~~~~~~~G~~i~~~gg~ 250 (255)
T PRK06113 215 IRRLGQPQDIANAALFLCSPAASWVSGQILTVSGGG 250 (255)
T ss_pred CCCCcCHHHHHHHHHHHcCccccCccCCEEEECCCc
Confidence 677889999999999999987666666666666654
|
|
| >PRK07097 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=285.15 Aligned_cols=254 Identities=20% Similarity=0.289 Sum_probs=206.7
Q ss_pred ccCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEc
Q 010380 171 EHCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIAC 250 (512)
Q Consensus 171 ~~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~ 250 (512)
+.+++.+|+++||||++|||+++|++|+++|++|++++|+.+++++..+++.+ .+.++.++.|
T Consensus 4 ~~~~~~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~ 66 (265)
T PRK07097 4 NLFSLKGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRE-----------------LGIEAHGYVC 66 (265)
T ss_pred cccCCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHh-----------------cCCceEEEEc
Confidence 35678999999999999999999999999999999999998888777666644 3457889999
Q ss_pred cCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEee
Q 010380 251 DVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNM 330 (512)
Q Consensus 251 Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~v 330 (512)
|++|+++++++++++.+.++++|+||||||+.. ..++.+.+.+++++++++|+.+++.+++.++|+|+++ +.++||++
T Consensus 67 Dl~~~~~~~~~~~~~~~~~~~id~li~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~g~iv~i 144 (265)
T PRK07097 67 DVTDEDGVQAMVSQIEKEVGVIDILVNNAGIIK-RIPMLEMSAEDFRQVIDIDLNAPFIVSKAVIPSMIKK-GHGKIINI 144 (265)
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCEEEECCCCCC-CCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhc-CCcEEEEE
Confidence 999999999999999999999999999999976 5678899999999999999999999999999999876 57899999
Q ss_pred cCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHh
Q 010380 331 DGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTL 410 (512)
Q Consensus 331 SS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~ 410 (512)
||. .+..+.++...|+++|+|++.|+++++.|+.+.||+||+|+||+|+|++................ ........+
T Consensus 145 sS~-~~~~~~~~~~~Y~~sKaal~~l~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 221 (265)
T PRK07097 145 CSM-MSELGRETVSAYAAAKGGLKMLTKNIASEYGEANIQCNGIGPGYIATPQTAPLRELQADGSRHPF--DQFIIAKTP 221 (265)
T ss_pred cCc-cccCCCCCCccHHHHHHHHHHHHHHHHHHhhhcCceEEEEEeccccccchhhhhhccccccchhH--HHHHHhcCC
Confidence 987 45667788899999999999999999999999999999999999999986432110000000000 001112334
Q ss_pred ccccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 411 VPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 411 l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
..++..|++++..+.||+++.....++..+..+|++
T Consensus 222 ~~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~gg~ 257 (265)
T PRK07097 222 AARWGDPEDLAGPAVFLASDASNFVNGHILYVDGGI 257 (265)
T ss_pred ccCCcCHHHHHHHHHHHhCcccCCCCCCEEEECCCc
Confidence 567788999999999999875444455555555554
|
|
| >PRK08862 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-34 Score=277.15 Aligned_cols=190 Identities=15% Similarity=0.140 Sum_probs=170.9
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
|++++|+++||||++|||+++|++|+++|++|++++|+.++++++.+++.+ .+.++..+.||+
T Consensus 1 ~~~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~-----------------~~~~~~~~~~D~ 63 (227)
T PRK08862 1 MDIKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSA-----------------LTDNVYSFQLKD 63 (227)
T ss_pred CCCCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHh-----------------cCCCeEEEEccC
Confidence 467899999999999999999999999999999999999998888777755 345678899999
Q ss_pred CChhhHHHHHHHHHHHcC-CCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeec
Q 010380 253 CEPADVQKLSNFAVNEFG-SIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD 331 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g-~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vS 331 (512)
+|+++++++++++.+++| +||+||||||......++.+.+.++|.+.+++|+.+++.+++.++|+|.+++++|+||++|
T Consensus 64 ~~~~~~~~~~~~~~~~~g~~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~g~Iv~is 143 (227)
T PRK08862 64 FSQESIRHLFDAIEQQFNRAPDVLVNNWTSSPLPSLFDEQPSESFIQQLSSLASTLFTYGQVAAERMRKRNKKGVIVNVI 143 (227)
T ss_pred CCHHHHHHHHHHHHHHhCCCCCEEEECCccCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 999999999999999999 9999999998654356788999999999999999999999999999998764578999999
Q ss_pred CCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCc
Q 010380 332 GAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDL 383 (512)
Q Consensus 332 S~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~ 383 (512)
|. .+ .++...|++||+|+.+|+++|+.|+.++||+||+|+||+++|+.
T Consensus 144 S~-~~---~~~~~~Y~asKaal~~~~~~la~el~~~~Irvn~v~PG~i~t~~ 191 (227)
T PRK08862 144 SH-DD---HQDLTGVESSNALVSGFTHSWAKELTPFNIRVGGVVPSIFSANG 191 (227)
T ss_pred cC-CC---CCCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcCcCCC
Confidence 86 32 35678899999999999999999999999999999999999984
|
|
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-34 Score=282.28 Aligned_cols=247 Identities=25% Similarity=0.372 Sum_probs=205.7
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
+++++|+++||||++|||++++++|+++|++|++++|+.+.+++..+++.+.. .+.++.++.+|+
T Consensus 5 ~~~~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~---------------~~~~~~~~~~Dl 69 (257)
T PRK09242 5 WRLDGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEF---------------PEREVHGLAADV 69 (257)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhC---------------CCCeEEEEECCC
Confidence 46789999999999999999999999999999999999888877777765421 245788999999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|+++++++++++.+.++++|+||||||... ..++.+.+.+++++.+++|+.+++.++++++|+|+++ +.++||++||
T Consensus 70 ~~~~~~~~~~~~~~~~~g~id~li~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~ii~~sS 147 (257)
T PRK09242 70 SDDEDRRAILDWVEDHWDGLHILVNNAGGNI-RKAAIDYTEDEWRGIFETNLFSAFELSRYAHPLLKQH-ASSAIVNIGS 147 (257)
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCCCC-CCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhc-CCceEEEECc
Confidence 9999999999999999999999999999865 5678889999999999999999999999999999876 4689999998
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhcc
Q 010380 333 AGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVP 412 (512)
Q Consensus 333 ~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~ 412 (512)
. ++..+.++.+.|+++|++++.|+++++.|+.+.||+||+|+||+++|++....... ... ..+...+.++.
T Consensus 148 ~-~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~Pg~i~t~~~~~~~~~--~~~------~~~~~~~~~~~ 218 (257)
T PRK09242 148 V-SGLTHVRSGAPYGMTKAALLQMTRNLAVEWAEDGIRVNAVAPWYIRTPLTSGPLSD--PDY------YEQVIERTPMR 218 (257)
T ss_pred c-ccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhCeEEEEEEECCCCCcccccccCC--hHH------HHHHHhcCCCC
Confidence 7 56777888899999999999999999999999999999999999999986432111 010 01122344567
Q ss_pred ccccchhhhhhhhhcCChHHHHHHHHHHhccCc
Q 010380 413 RIRVVKGSGKAINYLTPPRILLALVTAWLRRGR 445 (512)
Q Consensus 413 r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~ 445 (512)
++..|++++.++.||+++.....++..+..+|+
T Consensus 219 ~~~~~~~va~~~~~l~~~~~~~~~g~~i~~~gg 251 (257)
T PRK09242 219 RVGEPEEVAAAVAFLCMPAASYITGQCIAVDGG 251 (257)
T ss_pred CCcCHHHHHHHHHHHhCcccccccCCEEEECCC
Confidence 788999999999999987654444444444443
|
|
| >PLN02253 xanthoxin dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-34 Score=286.43 Aligned_cols=253 Identities=21% Similarity=0.275 Sum_probs=199.9
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
.++++|+++||||++|||+++|++|+++|++|++++|+.+..++..+++. .+.++.++++|+
T Consensus 14 ~~l~~k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~Dl 75 (280)
T PLN02253 14 QRLLGKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLG------------------GEPNVCFFHCDV 75 (280)
T ss_pred cccCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhc------------------CCCceEEEEeec
Confidence 45789999999999999999999999999999999998776655544431 124688999999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCC-CCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeec
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKG-FKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD 331 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~-~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vS 331 (512)
+|+++++++++.+.++++++|+||||||.... ..++.+.+.+++++++++|+.|+++++++++|.|.++ +.|+||+++
T Consensus 76 ~d~~~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~ii~is 154 (280)
T PLN02253 76 TVEDDVSRAVDFTVDKFGTLDIMVNNAGLTGPPCPDIRNVELSEFEKVFDVNVKGVFLGMKHAARIMIPL-KKGSIVSLC 154 (280)
T ss_pred CCHHHHHHHHHHHHHHhCCCCEEEECCCcCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhc-CCceEEEec
Confidence 99999999999999999999999999998642 2457788999999999999999999999999999876 468999999
Q ss_pred CCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHH-HHh
Q 010380 332 GAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVA-RTL 410 (512)
Q Consensus 332 S~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA-~~~ 410 (512)
|. ++..+.++...|++||+|+++++++++.|++++||+||+|+||+|+|++.......... ............. ...
T Consensus 155 S~-~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~v~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 232 (280)
T PLN02253 155 SV-ASAIGGLGPHAYTGSKHAVLGLTRSVAAELGKHGIRVNCVSPYAVPTALALAHLPEDER-TEDALAGFRAFAGKNAN 232 (280)
T ss_pred Ch-hhcccCCCCcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccccccccccccccc-hhhhhhhhHHHhhcCCC
Confidence 87 55666677889999999999999999999999999999999999999985432111000 0000000000000 111
Q ss_pred -ccccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 411 -VPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 411 -l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
..+...|+|++.++.||+++...+.++..+..+|++
T Consensus 233 l~~~~~~~~dva~~~~~l~s~~~~~i~G~~i~vdgG~ 269 (280)
T PLN02253 233 LKGVELTVDDVANAVLFLASDEARYISGLNLMIDGGF 269 (280)
T ss_pred CcCCCCCHHHHHHHHHhhcCcccccccCcEEEECCch
Confidence 234568999999999999987766666666666665
|
|
| >PLN00015 protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-34 Score=289.68 Aligned_cols=264 Identities=16% Similarity=0.181 Sum_probs=202.8
Q ss_pred EEECCCChHHHHHHHHHHHCC-CEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhhHH
Q 010380 181 VITGSTRGLGKALAREFLLSG-DRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPADVQ 259 (512)
Q Consensus 181 LVTGassGIG~aiA~~La~~G-a~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~sv~ 259 (512)
|||||++|||+++|++|+++| ++|++++|+.++++++.+++.. .+.++.++.+|++|.++++
T Consensus 1 lITGas~GIG~aia~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~-----------------~~~~~~~~~~Dl~d~~~v~ 63 (308)
T PLN00015 1 IITGASSGLGLATAKALAETGKWHVVMACRDFLKAERAAKSAGM-----------------PKDSYTVMHLDLASLDSVR 63 (308)
T ss_pred CEeCCCChHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhcC-----------------CCCeEEEEEecCCCHHHHH
Confidence 699999999999999999999 9999999998887766665532 2356888999999999999
Q ss_pred HHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCC-CCeEEeecCCCCCCC
Q 010380 260 KLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPK-GGHIFNMDGAGSGGS 338 (512)
Q Consensus 260 ~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~-~g~IV~vSS~~a~~~ 338 (512)
++++++.+.+++||+||||||+..+..++.+.+.++|++++++|+.|+++++++++|.|++++. +|+||++||..+...
T Consensus 64 ~~~~~~~~~~~~iD~lInnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~l~~~~~~~g~IV~vsS~~~~~~ 143 (308)
T PLN00015 64 QFVDNFRRSGRPLDVLVCNAAVYLPTAKEPTFTADGFELSVGTNHLGHFLLSRLLLDDLKKSDYPSKRLIIVGSITGNTN 143 (308)
T ss_pred HHHHHHHhcCCCCCEEEECCCcCCCCCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCCCEEEEEeccccccc
Confidence 9999999888999999999998643345678899999999999999999999999999987632 589999999733110
Q ss_pred ----------------------------------CCCCcchhhHHHHHHHHHHHHHHHHhCC-CCeEEEEEeCCcc-cCC
Q 010380 339 ----------------------------------STPLTAVYGSTKCGLRQLQASLFKESKR-SKVGVHTASPGMV-LTD 382 (512)
Q Consensus 339 ----------------------------------~~p~~~~Y~aSKaAl~~l~~sLa~El~~-~GIrVn~V~PG~V-~T~ 382 (512)
..++..+|++||+|+..+++.+++|+.+ .||+|++|+||+| .|+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aY~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~t~ 223 (308)
T PLN00015 144 TLAGNVPPKANLGDLRGLAGGLNGLNSSAMIDGGEFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFASLYPGCIATTG 223 (308)
T ss_pred cccccCCCccchhhhhhhhcccCCccchhhccccCCcHHHHHhHhHHHHHHHHHHHHHhhcccCCeEEEEecCCcccCcc
Confidence 0124567999999999999999999975 6999999999999 799
Q ss_pred cccCCcchhhhhhhhhhcCCHHHHHHHhccccccchhhhhhhhhcCChHHHHHHHHHHhccCc---c-cccchhhhhHHH
Q 010380 383 LLLSGSTIQNKQMFNIICELPETVARTLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGR---W-FDDQGRALYAAE 458 (512)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~---~-~~~~~~~~~~~~ 458 (512)
|........ .... ....+.+.++...|++.+..+.+++.+......+..+..+|. + ......+.+...
T Consensus 224 ~~~~~~~~~-~~~~-------~~~~~~~~~~~~~pe~~a~~~~~l~~~~~~~~~G~~~~~~g~~~~~~~~~~~~a~d~~~ 295 (308)
T PLN00015 224 LFREHIPLF-RLLF-------PPFQKYITKGYVSEEEAGKRLAQVVSDPSLTKSGVYWSWNGGSASFENQLSQEASDAEK 295 (308)
T ss_pred ccccccHHH-HHHH-------HHHHHHHhcccccHHHhhhhhhhhccccccCCCccccccCCcccccccCcChhhcCHHH
Confidence 865422111 1000 112233445667888888888888876554444444444442 1 233445667788
Q ss_pred HHHHHHHHHHc
Q 010380 459 ADRIRNWAENR 469 (512)
Q Consensus 459 ~~rl~~w~~~~ 469 (512)
.++||+|+++.
T Consensus 296 ~~~lw~~~~~~ 306 (308)
T PLN00015 296 AKKVWEISEKL 306 (308)
T ss_pred HHHHHHHHHHh
Confidence 89999999874
|
|
| >PRK05876 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=284.02 Aligned_cols=194 Identities=28% Similarity=0.424 Sum_probs=177.6
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
.+.+|+++||||++|||+++|++|+++|++|++++|+.+++++..+++.. .+.++.++.||++
T Consensus 3 ~~~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~-----------------~~~~~~~~~~Dv~ 65 (275)
T PRK05876 3 GFPGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRA-----------------EGFDVHGVMCDVR 65 (275)
T ss_pred CcCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-----------------cCCeEEEEeCCCC
Confidence 36799999999999999999999999999999999999888877776654 3457888999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
|+++++++++++.+.+|++|+||||||+.. .+++.+.+.++|++++++|+.|++++++.++|.|.+++.+|+||++||.
T Consensus 66 d~~~v~~~~~~~~~~~g~id~li~nAg~~~-~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~~~~g~iv~isS~ 144 (275)
T PRK05876 66 HREEVTHLADEAFRLLGHVDVVFSNAGIVV-GGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGTGGHVVFTASF 144 (275)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCcCC-CCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCCh
Confidence 999999999999999999999999999876 5788899999999999999999999999999999887557899999998
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccC
Q 010380 334 GSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLS 386 (512)
Q Consensus 334 ~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~ 386 (512)
++..+.++.+.|++||+|+.+|+++|+.|+.++||+|++|+||+++|++...
T Consensus 145 -~~~~~~~~~~~Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~ 196 (275)
T PRK05876 145 -AGLVPNAGLGAYGVAKYGVVGLAETLAREVTADGIGVSVLCPMVVETNLVAN 196 (275)
T ss_pred -hhccCCCCCchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCccccccccc
Confidence 6778889999999999999999999999999999999999999999998643
|
|
| >PRK07677 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-34 Score=279.83 Aligned_cols=242 Identities=23% Similarity=0.301 Sum_probs=196.9
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChh
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPA 256 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~ 256 (512)
+|+++||||++|||++++++|+++|++|++++|+.+++++..+++.+ .+.++.++.+|++|++
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~-----------------~~~~~~~~~~D~~~~~ 63 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQ-----------------FPGQVLTVQMDVRNPE 63 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-----------------cCCcEEEEEecCCCHH
Confidence 58999999999999999999999999999999998877776666543 2357889999999999
Q ss_pred hHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCC
Q 010380 257 DVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSG 336 (512)
Q Consensus 257 sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~ 336 (512)
+++++++++.+.++++|+||||||... ..++.+.+.++|++++++|+.++++++++++|.|.++...|+||++||. .+
T Consensus 64 ~~~~~~~~~~~~~~~id~lI~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~-~~ 141 (252)
T PRK07677 64 DVQKMVEQIDEKFGRIDALINNAAGNF-ICPAEDLSVNGWNSVIDIVLNGTFYCSQAVGKYWIEKGIKGNIINMVAT-YA 141 (252)
T ss_pred HHHHHHHHHHHHhCCccEEEECCCCCC-CCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCCEEEEEEcCh-hh
Confidence 999999999999999999999999765 4678899999999999999999999999999999775456899999988 56
Q ss_pred CCCCCCcchhhHHHHHHHHHHHHHHHHhCC-CCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHH-HHHhcccc
Q 010380 337 GSSTPLTAVYGSTKCGLRQLQASLFKESKR-SKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETV-ARTLVPRI 414 (512)
Q Consensus 337 ~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~-~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~v-A~~~l~r~ 414 (512)
..+.++...|++||+|+++|+++|+.|+.+ +||+||+|+||+|+|+........ .... .+.. ...+++++
T Consensus 142 ~~~~~~~~~Y~~sKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~~~~~~~~~~~-~~~~-------~~~~~~~~~~~~~ 213 (252)
T PRK07677 142 WDAGPGVIHSAAAKAGVLAMTRTLAVEWGRKYGIRVNAIAPGPIERTGGADKLWE-SEEA-------AKRTIQSVPLGRL 213 (252)
T ss_pred ccCCCCCcchHHHHHHHHHHHHHHHHHhCcccCeEEEEEeecccccccccccccC-CHHH-------HHHHhccCCCCCC
Confidence 667788899999999999999999999974 699999999999996432111000 0000 0111 12346788
Q ss_pred ccchhhhhhhhhcCChHHHHHHHHHHhccCc
Q 010380 415 RVVKGSGKAINYLTPPRILLALVTAWLRRGR 445 (512)
Q Consensus 415 ~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~ 445 (512)
..|++++..+.||+++.....++..+..+|+
T Consensus 214 ~~~~~va~~~~~l~~~~~~~~~g~~~~~~gg 244 (252)
T PRK07677 214 GTPEEIAGLAYFLLSDEAAYINGTCITMDGG 244 (252)
T ss_pred CCHHHHHHHHHHHcCccccccCCCEEEECCC
Confidence 8999999999999987755555555444443
|
|
| >PRK05599 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=278.71 Aligned_cols=213 Identities=20% Similarity=0.246 Sum_probs=181.0
Q ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhh
Q 010380 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPAD 257 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~s 257 (512)
++++||||++|||+++|++|+ +|++|++++|++++++++.+++++. .+.++.+++||++|+++
T Consensus 1 ~~vlItGas~GIG~aia~~l~-~g~~Vil~~r~~~~~~~~~~~l~~~----------------~~~~~~~~~~Dv~d~~~ 63 (246)
T PRK05599 1 MSILILGGTSDIAGEIATLLC-HGEDVVLAARRPEAAQGLASDLRQR----------------GATSVHVLSFDAQDLDT 63 (246)
T ss_pred CeEEEEeCccHHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhc----------------cCCceEEEEcccCCHHH
Confidence 578999999999999999999 5999999999999998888877652 12357889999999999
Q ss_pred HHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCCC
Q 010380 258 VQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGG 337 (512)
Q Consensus 258 v~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~~ 337 (512)
++++++++.+.+|++|++|||||+.. ..+..+.+.+++++++++|+.+++++++.++|.|.++..+|+||++||. ++.
T Consensus 64 v~~~~~~~~~~~g~id~lv~nag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~-~~~ 141 (246)
T PRK05599 64 HRELVKQTQELAGEISLAVVAFGILG-DQERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQTAPAAIVAFSSI-AGW 141 (246)
T ss_pred HHHHHHHHHHhcCCCCEEEEecCcCC-CchhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCEEEEEecc-ccc
Confidence 99999999999999999999999865 3455677788899999999999999999999999876446899999998 677
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhcccccc
Q 010380 338 SSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPRIRV 416 (512)
Q Consensus 338 ~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~r~~~ 416 (512)
.+.++...|++||+|+++|+++|+.|+.++||+||+|+||+|+|+|....... ....+||++|+.++..+..
T Consensus 142 ~~~~~~~~Y~asKaa~~~~~~~la~el~~~~I~v~~v~PG~v~T~~~~~~~~~-------~~~~~pe~~a~~~~~~~~~ 213 (246)
T PRK05599 142 RARRANYVYGSTKAGLDAFCQGLADSLHGSHVRLIIARPGFVIGSMTTGMKPA-------PMSVYPRDVAAAVVSAITS 213 (246)
T ss_pred cCCcCCcchhhHHHHHHHHHHHHHHHhcCCCceEEEecCCcccchhhcCCCCC-------CCCCCHHHHHHHHHHHHhc
Confidence 78889999999999999999999999999999999999999999986432110 1123688888877765543
|
|
| >PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-34 Score=282.60 Aligned_cols=250 Identities=26% Similarity=0.323 Sum_probs=195.1
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
++++|+++||||++|||+++|++|+++|++|++++|++. .++..+++.. .+.++.++.+|++
T Consensus 5 ~~~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~-~~~~~~~~~~-----------------~~~~~~~~~~D~~ 66 (260)
T PRK12823 5 RFAGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSEL-VHEVAAELRA-----------------AGGEALALTADLE 66 (260)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchH-HHHHHHHHHh-----------------cCCeEEEEEEeCC
Confidence 477899999999999999999999999999999999853 3444444433 3457888999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
|+++++++++++.+.++++|+||||||......++.+.+.++|++.+++|+.+++++++.++|.|+++ +.|+||++||.
T Consensus 67 ~~~~~~~~~~~~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~g~iv~~sS~ 145 (260)
T PRK12823 67 TYAGAQAAMAAAVEAFGRIDVLINNVGGTIWAKPFEEYEEEQIEAEIRRSLFPTLWCCRAVLPHMLAQ-GGGAIVNVSSI 145 (260)
T ss_pred CHHHHHHHHHHHHHHcCCCeEEEECCccccCCCChhhCChHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCeEEEEcCc
Confidence 99999999999999999999999999975434678889999999999999999999999999999876 46899999987
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcch--hhhhhhhhhcC-CHHHHHHHh
Q 010380 334 GSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTI--QNKQMFNIICE-LPETVARTL 410 (512)
Q Consensus 334 ~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~--~~~~~~~~~~~-~pe~vA~~~ 410 (512)
. .. .+....|++||+|+++|+++++.|++++||+||+|+||+|+||+....... ........... ..+.....+
T Consensus 146 ~-~~--~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (260)
T PRK12823 146 A-TR--GINRVPYSAAKGGVNALTASLAFEYAEHGIRVNAVAPGGTEAPPRRVPRNAAPQSEQEKAWYQQIVDQTLDSSL 222 (260)
T ss_pred c-cc--CCCCCccHHHHHHHHHHHHHHHHHhcccCcEEEEEecCccCCcchhhHHhhccccccccccHHHHHHHHhccCC
Confidence 3 32 235578999999999999999999999999999999999999963210000 00000000000 001122346
Q ss_pred ccccccchhhhhhhhhcCChHHHHHHHHHHhccCc
Q 010380 411 VPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGR 445 (512)
Q Consensus 411 l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~ 445 (512)
+++...|+|+++++.||+++...+.++..+..+|+
T Consensus 223 ~~~~~~~~dva~~~~~l~s~~~~~~~g~~~~v~gg 257 (260)
T PRK12823 223 MKRYGTIDEQVAAILFLASDEASYITGTVLPVGGG 257 (260)
T ss_pred cccCCCHHHHHHHHHHHcCcccccccCcEEeecCC
Confidence 77888999999999999988755555555544443
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=311.11 Aligned_cols=242 Identities=27% Similarity=0.439 Sum_probs=204.2
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
...+|++|||||++|||+++|++|+++|++|++++|+.++++++.+++ +.++..+.+|++
T Consensus 266 ~~~~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~--------------------~~~~~~~~~D~~ 325 (520)
T PRK06484 266 AESPRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGAKKLAEAL--------------------GDEHLSVQADIT 325 (520)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--------------------CCceeEEEccCC
Confidence 457899999999999999999999999999999999988776655432 245677899999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
|+++++++++++.+++|+||+||||||+.....++.+.+.++|++++++|+.|+++++++++|.|. +.|+||++||.
T Consensus 326 ~~~~~~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~---~~g~iv~isS~ 402 (520)
T PRK06484 326 DEAAVESAFAQIQARWGRLDVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMS---QGGVIVNLGSI 402 (520)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhc---cCCEEEEECch
Confidence 999999999999999999999999999864346788899999999999999999999999999993 46899999998
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhccc
Q 010380 334 GSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPR 413 (512)
Q Consensus 334 ~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~r 413 (512)
++..+.++...|++||+++++|+++|+.|+.++||+||+|+||+|+|+|........ ... ..+.....++++
T Consensus 403 -~~~~~~~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~-~~~------~~~~~~~~~~~~ 474 (520)
T PRK06484 403 -ASLLALPPRNAYCASKAAVTMLSRSLACEWAPAGIRVNTVAPGYIETPAVLALKASG-RAD------FDSIRRRIPLGR 474 (520)
T ss_pred -hhcCCCCCCchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCccCchhhhhcccc-HHH------HHHHHhcCCCCC
Confidence 677888999999999999999999999999999999999999999999864321100 000 011122345678
Q ss_pred cccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 414 IRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 414 ~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
+..|+++++.+.||+++...+.++..+..+|++
T Consensus 475 ~~~~~dia~~~~~l~s~~~~~~~G~~i~vdgg~ 507 (520)
T PRK06484 475 LGDPEEVAEAIAFLASPAASYVNGATLTVDGGW 507 (520)
T ss_pred CcCHHHHHHHHHHHhCccccCccCcEEEECCCc
Confidence 889999999999999987767777777777775
|
|
| >PRK06300 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=293.38 Aligned_cols=259 Identities=18% Similarity=0.175 Sum_probs=188.4
Q ss_pred CCCCCCEEEEECCC--ChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhh--hhhcCCCCcccccCceEEEE
Q 010380 173 CKAGPRNVVITGST--RGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEG--MMAAGGSSKKNLVHAKVAGI 248 (512)
Q Consensus 173 ~~l~gk~vLVTGas--sGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~--~~~~g~~~~~~~~g~~v~~v 248 (512)
.++.||++|||||+ +|||+++|+.|+++|++|++.++. +.++...+......... ....+.. ....++..+
T Consensus 4 ~~~~gk~alITGa~~~~GIG~a~A~~la~~Ga~Vvv~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~----~~~~~~~~~ 78 (299)
T PRK06300 4 IDLTGKIAFIAGIGDDQGYGWGIAKALAEAGATILVGTWV-PIYKIFSQSLELGKFDASRKLSNGSL----LTFAKIYPM 78 (299)
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHHCCCEEEEEecc-chhhhhhhhcccccccccccccccch----hhhhhHHHh
Confidence 46789999999995 999999999999999999998765 22222222211100000 0000000 000011112
Q ss_pred EccCCCh------------------hhHHHHHHHHHHHcCCCcccccccccCCC-CCCCcCCCHHHHHHHHHhhhhhHHH
Q 010380 249 ACDVCEP------------------ADVQKLSNFAVNEFGSIDIWINNAGTNKG-FKPLLQFTNEEIEQIVSTNLVGSIL 309 (512)
Q Consensus 249 ~~Dltd~------------------~sv~~~~~~i~~~~g~IDvLInnAG~~~~-~~~~~~~s~e~~~~~~~vNv~g~~~ 309 (512)
.+|+++. ++++++++++.+++|++|+||||||.... ..++.+++.++|++++++|+.|+++
T Consensus 79 ~~d~~~~~~v~~~i~~~~~~~~~~~~si~~~~~~v~~~~G~lDvLVnNAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~ 158 (299)
T PRK06300 79 DASFDTPEDVPEEIRENKRYKDLSGYTISEVAEQVKKDFGHIDILVHSLANSPEISKPLLETSRKGYLAALSTSSYSFVS 158 (299)
T ss_pred hhhcCCCEEeecccCccccccCCCHHHHHHHHHHHHHHcCCCcEEEECCCcCcccCCChhhCCHHHHHHHHHHHhHHHHH
Confidence 2333333 35899999999999999999999997531 4678899999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCeEEeecCCCCCCCCCCCcc-hhhHHHHHHHHHHHHHHHHhCC-CCeEEEEEeCCcccCCcccCC
Q 010380 310 CTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTA-VYGSTKCGLRQLQASLFKESKR-SKVGVHTASPGMVLTDLLLSG 387 (512)
Q Consensus 310 l~k~~lp~m~~~~~~g~IV~vSS~~a~~~~~p~~~-~Y~aSKaAl~~l~~sLa~El~~-~GIrVn~V~PG~V~T~~~~~~ 387 (512)
++++++|+|++ .|+||+++|. ++..+.|+.. .|++||+|+++|+++|+.|+++ +||+||+|+||+|+|+|....
T Consensus 159 l~~a~~p~m~~---~G~ii~iss~-~~~~~~p~~~~~Y~asKaAl~~lt~~la~el~~~~gIrVn~V~PG~v~T~~~~~~ 234 (299)
T PRK06300 159 LLSHFGPIMNP---GGSTISLTYL-ASMRAVPGYGGGMSSAKAALESDTKVLAWEAGRRWGIRVNTISAGPLASRAGKAI 234 (299)
T ss_pred HHHHHHHHhhc---CCeEEEEeeh-hhcCcCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeCCccChhhhcc
Confidence 99999999975 3789999987 5666777765 8999999999999999999987 599999999999999986331
Q ss_pred cchhhhhhhhhhcCCHHHHHHHhccccccchhhhhhhhhcCChHHHHHHHHHHhccCcccc
Q 010380 388 STIQNKQMFNIICELPETVARTLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWFD 448 (512)
Q Consensus 388 ~~~~~~~~~~~~~~~pe~vA~~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~~ 448 (512)
... .... .......++++...|++++..+.||+++...+.++..+..+|++..
T Consensus 235 ~~~--~~~~------~~~~~~~p~~r~~~peevA~~v~~L~s~~~~~itG~~i~vdGG~~~ 287 (299)
T PRK06300 235 GFI--ERMV------DYYQDWAPLPEPMEAEQVGAAAAFLVSPLASAITGETLYVDHGANV 287 (299)
T ss_pred ccc--HHHH------HHHHhcCCCCCCcCHHHHHHHHHHHhCccccCCCCCEEEECCCcce
Confidence 100 0100 1111234567888999999999999999877777777777776643
|
|
| >PRK07067 sorbitol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-34 Score=282.03 Aligned_cols=249 Identities=22% Similarity=0.346 Sum_probs=202.6
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
++.+|+++||||++|||.++|++|+++|++|++++|+.+.+++..+++ +.++.++.+|++
T Consensus 3 ~l~~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~--------------------~~~~~~~~~D~~ 62 (257)
T PRK07067 3 RLQGKVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLAALEI--------------------GPAAIAVSLDVT 62 (257)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHh--------------------CCceEEEEccCC
Confidence 477899999999999999999999999999999999988776554433 235788999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
|+++++++++++.+.++++|+||||||... ..++.+.+.+++++++++|+.+++.+++++++.|.++..+++||++||.
T Consensus 63 ~~~~~~~~~~~~~~~~~~id~li~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~ 141 (257)
T PRK07067 63 RQDSIDRIVAAAVERFGGIDILFNNAALFD-MAPILDISRDSYDRLFAVNVKGLFFLMQAVARHMVEQGRGGKIINMASQ 141 (257)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCcCC-CCCcccCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCcEEEEeCCH
Confidence 999999999999999999999999999876 5778889999999999999999999999999999876456899999987
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhh-cCCHHH-HHHHhc
Q 010380 334 GSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNII-CELPET-VARTLV 411 (512)
Q Consensus 334 ~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~-~~~pe~-vA~~~l 411 (512)
.+..+.++...|++||++++.|+++++.|+.++||+||+|+||+|+|+++......... ..... ....+. ....++
T Consensus 142 -~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~v~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 219 (257)
T PRK07067 142 -AGRRGEALVSHYCATKAAVISYTQSAALALIRHGINVNAIAPGVVDTPMWDQVDALFAR-YENRPPGEKKRLVGEAVPL 219 (257)
T ss_pred -HhCCCCCCCchhhhhHHHHHHHHHHHHHHhcccCeEEEEEeeCcccchhhhhhhhhhhh-ccCCCHHHHHHHHhhcCCC
Confidence 56677888999999999999999999999999999999999999999986432110000 00000 000111 123457
Q ss_pred cccccchhhhhhhhhcCChHHHHHHHHHHhccCc
Q 010380 412 PRIRVVKGSGKAINYLTPPRILLALVTAWLRRGR 445 (512)
Q Consensus 412 ~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~ 445 (512)
+++..|+|+++++.||+++.....++..+..+|+
T Consensus 220 ~~~~~~~dva~~~~~l~s~~~~~~~g~~~~v~gg 253 (257)
T PRK07067 220 GRMGVPDDLTGMALFLASADADYIVAQTYNVDGG 253 (257)
T ss_pred CCccCHHHHHHHHHHHhCcccccccCcEEeecCC
Confidence 7889999999999999998765555555555554
|
|
| >PRK05854 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-33 Score=285.20 Aligned_cols=196 Identities=24% Similarity=0.287 Sum_probs=169.0
Q ss_pred cCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEcc
Q 010380 172 HCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACD 251 (512)
Q Consensus 172 ~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~D 251 (512)
..++++|+++||||++|||+++|++|+++|++|++++|+.++++++.+++.+.. .+.++.++.||
T Consensus 9 ~~~l~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~---------------~~~~v~~~~~D 73 (313)
T PRK05854 9 VPDLSGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAV---------------PDAKLSLRALD 73 (313)
T ss_pred CcccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC---------------CCCceEEEEec
Confidence 456889999999999999999999999999999999999999888888876531 23468899999
Q ss_pred CCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeec
Q 010380 252 VCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD 331 (512)
Q Consensus 252 ltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vS 331 (512)
++|.++++++++++.+.+++||+||||||+.. .+..+.+.++++.++++|++|++.+++.++|.|++. .++||++|
T Consensus 74 l~d~~sv~~~~~~~~~~~~~iD~li~nAG~~~--~~~~~~t~~~~e~~~~vN~~g~~~l~~~llp~l~~~--~~riv~vs 149 (313)
T PRK05854 74 LSSLASVAALGEQLRAEGRPIHLLINNAGVMT--PPERQTTADGFELQFGTNHLGHFALTAHLLPLLRAG--RARVTSQS 149 (313)
T ss_pred CCCHHHHHHHHHHHHHhCCCccEEEECCcccc--CCccccCcccHHHHhhhhhHHHHHHHHHHHHHHHhC--CCCeEEEe
Confidence 99999999999999999999999999999865 234467889999999999999999999999999864 57999999
Q ss_pred CCCCCCC-----------CCCCcchhhHHHHHHHHHHHHHHHHh--CCCCeEEEEEeCCcccCCcccC
Q 010380 332 GAGSGGS-----------STPLTAVYGSTKCGLRQLQASLFKES--KRSKVGVHTASPGMVLTDLLLS 386 (512)
Q Consensus 332 S~~a~~~-----------~~p~~~~Y~aSKaAl~~l~~sLa~El--~~~GIrVn~V~PG~V~T~~~~~ 386 (512)
|..+... +.++...|+.||+|+..|++.|++++ .+.||+||+|+||+|+|++...
T Consensus 150 S~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~~gI~v~~v~PG~v~T~~~~~ 217 (313)
T PRK05854 150 SIAARRGAINWDDLNWERSYAGMRAYSQSKIAVGLFALELDRRSRAAGWGITSNLAHPGVAPTNLLAA 217 (313)
T ss_pred chhhcCCCcCcccccccccCcchhhhHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecceeccCcccc
Confidence 8733211 23456789999999999999999864 4678999999999999998643
|
|
| >PLN02780 ketoreductase/ oxidoreductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-33 Score=286.59 Aligned_cols=218 Identities=21% Similarity=0.309 Sum_probs=178.7
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
++..|++++||||++|||+++|++|+++|++|++++|++++++++.+++++.+ .+.++..+.+|+
T Consensus 49 ~~~~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l~~~~---------------~~~~~~~~~~Dl 113 (320)
T PLN02780 49 LKKYGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQSKY---------------SKTQIKTVVVDF 113 (320)
T ss_pred ccccCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHC---------------CCcEEEEEEEEC
Confidence 34569999999999999999999999999999999999999988888876532 124788899999
Q ss_pred CChhhHHHHHHHHHHHcC--CCcccccccccCCC-CCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEe
Q 010380 253 CEPADVQKLSNFAVNEFG--SIDIWINNAGTNKG-FKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFN 329 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g--~IDvLInnAG~~~~-~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~ 329 (512)
++ ++.+.++++.+.++ ++|+||||||+..+ ..++.+.+.+++++++++|+.|++.+++.++|.|.++ +.|+||+
T Consensus 114 ~~--~~~~~~~~l~~~~~~~didilVnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~-~~g~IV~ 190 (320)
T PLN02780 114 SG--DIDEGVKRIKETIEGLDVGVLINNVGVSYPYARFFHEVDEELLKNLIKVNVEGTTKVTQAVLPGMLKR-KKGAIIN 190 (320)
T ss_pred CC--CcHHHHHHHHHHhcCCCccEEEEecCcCCCCCcccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhc-CCcEEEE
Confidence 85 33444444545444 46699999998642 2467889999999999999999999999999999887 5789999
Q ss_pred ecCCCCCC-C-CCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHH
Q 010380 330 MDGAGSGG-S-STPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVA 407 (512)
Q Consensus 330 vSS~~a~~-~-~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA 407 (512)
+||. ++. . +.|..+.|++||+|+++|+++|+.|+.++||+|++|+||+|+|+|..... ......+||++|
T Consensus 191 iSS~-a~~~~~~~p~~~~Y~aSKaal~~~~~~L~~El~~~gI~V~~v~PG~v~T~~~~~~~-------~~~~~~~p~~~A 262 (320)
T PLN02780 191 IGSG-AAIVIPSDPLYAVYAATKAYIDQFSRCLYVEYKKSGIDVQCQVPLYVATKMASIRR-------SSFLVPSSDGYA 262 (320)
T ss_pred Eech-hhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccCeEEEEEeeCceecCcccccC-------CCCCCCCHHHHH
Confidence 9997 443 3 35888999999999999999999999999999999999999999964211 111234799999
Q ss_pred HHhcccccc
Q 010380 408 RTLVPRIRV 416 (512)
Q Consensus 408 ~~~l~r~~~ 416 (512)
+.++..+..
T Consensus 263 ~~~~~~~~~ 271 (320)
T PLN02780 263 RAALRWVGY 271 (320)
T ss_pred HHHHHHhCC
Confidence 999987753
|
|
| >PRK06940 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-34 Score=284.76 Aligned_cols=232 Identities=20% Similarity=0.241 Sum_probs=188.0
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChh
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPA 256 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~ 256 (512)
+|+++|||+ +|||+++|++|+ +|++|++++|+.+++++..+++.+ .+.++.++.||++|++
T Consensus 2 ~k~~lItGa-~gIG~~la~~l~-~G~~Vv~~~r~~~~~~~~~~~l~~-----------------~~~~~~~~~~Dv~d~~ 62 (275)
T PRK06940 2 KEVVVVIGA-GGIGQAIARRVG-AGKKVLLADYNEENLEAAAKTLRE-----------------AGFDVSTQEVDVSSRE 62 (275)
T ss_pred CCEEEEECC-ChHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHh-----------------cCCeEEEEEeecCCHH
Confidence 579999998 699999999996 899999999998887777666643 3457889999999999
Q ss_pred hHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCC
Q 010380 257 DVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSG 336 (512)
Q Consensus 257 sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~ 336 (512)
+++++++++ ++++++|+||||||+.. +.++|++++++|+.|+++++++++|.|.++ |++|+++|.. +
T Consensus 63 ~i~~~~~~~-~~~g~id~li~nAG~~~--------~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~---g~iv~isS~~-~ 129 (275)
T PRK06940 63 SVKALAATA-QTLGPVTGLVHTAGVSP--------SQASPEAILKVDLYGTALVLEEFGKVIAPG---GAGVVIASQS-G 129 (275)
T ss_pred HHHHHHHHH-HhcCCCCEEEECCCcCC--------chhhHHHHHHHhhHHHHHHHHHHHHHHhhC---CCEEEEEecc-c
Confidence 999999988 56899999999999743 236799999999999999999999999753 6788888873 3
Q ss_pred CCCC------------------------------CCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccC
Q 010380 337 GSST------------------------------PLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLS 386 (512)
Q Consensus 337 ~~~~------------------------------p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~ 386 (512)
..+. +++..|++||+|+++++++++.|+.++||+||+|+||+|+|+|...
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gIrvn~i~PG~v~T~~~~~ 209 (275)
T PRK06940 130 HRLPALTAEQERALATTPTEELLSLPFLQPDAIEDSLHAYQIAKRANALRVMAEAVKWGERGARINSISPGIISTPLAQD 209 (275)
T ss_pred ccCcccchhhhccccccccccccccccccccccCCccchhHHHHHHHHHHHHHHHHHHccCCeEEEEeccCcCcCccchh
Confidence 3221 2467899999999999999999999999999999999999998643
Q ss_pred CcchhhhhhhhhhcCCHHHHHHHhccccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 387 GSTIQNKQMFNIICELPETVARTLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 387 ~~~~~~~~~~~~~~~~pe~vA~~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
.......... .+..+..+++++..|+|+++++.||+++...+.++..+..||++
T Consensus 210 ~~~~~~~~~~------~~~~~~~p~~r~~~peeia~~~~fL~s~~~~~itG~~i~vdgg~ 263 (275)
T PRK06940 210 ELNGPRGDGY------RNMFAKSPAGRPGTPDEIAALAEFLMGPRGSFITGSDFLVDGGA 263 (275)
T ss_pred hhcCCchHHH------HHHhhhCCcccCCCHHHHHHHHHHHcCcccCcccCceEEEcCCe
Confidence 1110000000 11223456788999999999999999998888888888888775
|
|
| >PRK07856 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=278.89 Aligned_cols=238 Identities=29% Similarity=0.349 Sum_probs=199.2
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
+++++|+++||||++|||+++|++|+++|++|++++|+.++ + . .+.++.++.+|+
T Consensus 2 ~~~~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~~~~------~--~-----------------~~~~~~~~~~D~ 56 (252)
T PRK07856 2 LDLTGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRAPE------T--V-----------------DGRPAEFHAADV 56 (252)
T ss_pred CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCChhh------h--h-----------------cCCceEEEEccC
Confidence 46789999999999999999999999999999999998654 0 1 234678899999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|+++++++++.+.+.++++|+||||||+.. ..++.+.+.++|++++++|+.+++.+++++.|.|.++.+.|+||++||
T Consensus 57 ~~~~~~~~~~~~~~~~~~~id~vi~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS 135 (252)
T PRK07856 57 RDPDQVAALVDAIVERHGRLDVLVNNAGGSP-YALAAEASPRFHEKIVELNLLAPLLVAQAANAVMQQQPGGGSIVNIGS 135 (252)
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCCCC-CCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcc
Confidence 9999999999999999999999999999875 567788999999999999999999999999999987645689999999
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhcc
Q 010380 333 AGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVP 412 (512)
Q Consensus 333 ~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~ 412 (512)
. .+..+.++...|++||+++++|++.++.|+.+. |+||+|+||+|+|++....... .... .......+++
T Consensus 136 ~-~~~~~~~~~~~Y~~sK~a~~~l~~~la~e~~~~-i~v~~i~Pg~v~t~~~~~~~~~--~~~~------~~~~~~~~~~ 205 (252)
T PRK07856 136 V-SGRRPSPGTAAYGAAKAGLLNLTRSLAVEWAPK-VRVNAVVVGLVRTEQSELHYGD--AEGI------AAVAATVPLG 205 (252)
T ss_pred c-ccCCCCCCCchhHHHHHHHHHHHHHHHHHhcCC-eEEEEEEeccccChHHhhhccC--HHHH------HHHhhcCCCC
Confidence 8 677788899999999999999999999999988 9999999999999985321110 0000 1111224567
Q ss_pred ccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 413 RIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 413 r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
++..|++++..+.||+++...+.++..+..+|++
T Consensus 206 ~~~~p~~va~~~~~L~~~~~~~i~G~~i~vdgg~ 239 (252)
T PRK07856 206 RLATPADIAWACLFLASDLASYVSGANLEVHGGG 239 (252)
T ss_pred CCcCHHHHHHHHHHHcCcccCCccCCEEEECCCc
Confidence 8889999999999999987766667666666654
|
|
| >PRK06523 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=277.75 Aligned_cols=242 Identities=21% Similarity=0.272 Sum_probs=197.8
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
.++++|++|||||++|||++++++|+++|++|++++|+.+.. ...++.++.||+
T Consensus 5 ~~~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~~~~--------------------------~~~~~~~~~~D~ 58 (260)
T PRK06523 5 LELAGKRALVTGGTKGIGAATVARLLEAGARVVTTARSRPDD--------------------------LPEGVEFVAADL 58 (260)
T ss_pred cCCCCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCChhhh--------------------------cCCceeEEecCC
Confidence 467899999999999999999999999999999999986421 123577899999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCC-CCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeec
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNK-GFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD 331 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~-~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vS 331 (512)
+|+++++++++++.+.++++|+||||||... ...++.+.+.++|++++++|+.+++.++++++|.|+++ +.|+||++|
T Consensus 59 ~~~~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~g~ii~is 137 (260)
T PRK06523 59 TTAEGCAAVARAVLERLGGVDILVHVLGGSSAPAGGFAALTDEEWQDELNLNLLAAVRLDRALLPGMIAR-GSGVIIHVT 137 (260)
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCcccccCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhc-CCcEEEEEe
Confidence 9999999999999999999999999999753 23567788999999999999999999999999999876 568999999
Q ss_pred CCCCCCCCCC-CcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHH---
Q 010380 332 GAGSGGSSTP-LTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVA--- 407 (512)
Q Consensus 332 S~~a~~~~~p-~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA--- 407 (512)
|. .+..+.+ ....|++||+++++|+++++.|+.++||+||+|+||+|+|++....... .......++++..
T Consensus 138 S~-~~~~~~~~~~~~Y~~sK~a~~~l~~~~a~~~~~~gi~v~~i~Pg~v~t~~~~~~~~~----~~~~~~~~~~~~~~~~ 212 (260)
T PRK06523 138 SI-QRRLPLPESTTAYAAAKAALSTYSKSLSKEVAPKGVRVNTVSPGWIETEAAVALAER----LAEAAGTDYEGAKQII 212 (260)
T ss_pred cc-cccCCCCCCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccCccHHHHHHH----HHhhcCCCHHHHHHHH
Confidence 87 4555544 7889999999999999999999999999999999999999986321110 0000011222222
Q ss_pred -----HHhccccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 408 -----RTLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 408 -----~~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
..++++...|+|+++.+.||++++..+.++..+..+|++
T Consensus 213 ~~~~~~~p~~~~~~~~~va~~~~~l~s~~~~~~~G~~~~vdgg~ 256 (260)
T PRK06523 213 MDSLGGIPLGRPAEPEEVAELIAFLASDRAASITGTEYVIDGGT 256 (260)
T ss_pred HHHhccCccCCCCCHHHHHHHHHHHhCcccccccCceEEecCCc
Confidence 245677889999999999999988767777777666654
|
|
| >PRK05872 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=287.16 Aligned_cols=192 Identities=24% Similarity=0.378 Sum_probs=174.8
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
.++++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++.. +.++..+.||+
T Consensus 5 ~~l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~------------------~~~~~~~~~Dv 66 (296)
T PRK05872 5 TSLAGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAELGG------------------DDRVLTVVADV 66 (296)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcC------------------CCcEEEEEecC
Confidence 457899999999999999999999999999999999998887776655421 24577788999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|+++++++++++.+.++++|+||||||+.. ..++.+.+.++|++++++|+.|++++++.++|.|.++ .|+||++||
T Consensus 67 ~d~~~v~~~~~~~~~~~g~id~vI~nAG~~~-~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~--~g~iv~isS 143 (296)
T PRK05872 67 TDLAAMQAAAEEAVERFGGIDVVVANAGIAS-GGSVAQVDPDAFRRVIDVNLLGVFHTVRATLPALIER--RGYVLQVSS 143 (296)
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCcCC-CcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCEEEEEeC
Confidence 9999999999999999999999999999977 6788999999999999999999999999999999874 589999999
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccC
Q 010380 333 AGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLS 386 (512)
Q Consensus 333 ~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~ 386 (512)
. ++..+.++...|++||+++++|+++|+.|+.++||+||+|+||+++|+|...
T Consensus 144 ~-~~~~~~~~~~~Y~asKaal~~~~~~l~~e~~~~gi~v~~v~Pg~v~T~~~~~ 196 (296)
T PRK05872 144 L-AAFAAAPGMAAYCASKAGVEAFANALRLEVAHHGVTVGSAYLSWIDTDLVRD 196 (296)
T ss_pred H-hhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHCcEEEEEecCcccchhhhh
Confidence 8 6778888999999999999999999999999999999999999999998754
|
|
| >PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-34 Score=282.30 Aligned_cols=244 Identities=22% Similarity=0.261 Sum_probs=198.9
Q ss_pred cCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEcc
Q 010380 172 HCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACD 251 (512)
Q Consensus 172 ~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~D 251 (512)
.+++++|+++||||++|||+++|++|+++|++|++++|+.++.+ ..++.++.+|
T Consensus 4 ~~~l~~k~vlItG~s~gIG~~la~~l~~~G~~v~~~~~~~~~~~--------------------------~~~~~~~~~D 57 (266)
T PRK06171 4 WLNLQGKIIIVTGGSSGIGLAIVKELLANGANVVNADIHGGDGQ--------------------------HENYQFVPTD 57 (266)
T ss_pred cccCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCccccc--------------------------cCceEEEEcc
Confidence 35688999999999999999999999999999999999865421 1357789999
Q ss_pred CCChhhHHHHHHHHHHHcCCCcccccccccCCCC--------CCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCC
Q 010380 252 VCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGF--------KPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPK 323 (512)
Q Consensus 252 ltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~--------~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~ 323 (512)
++|+++++++++++.+.++++|+||||||...+. .++.+.+.++|++++++|+.++++++++++|+|.++ +
T Consensus 58 ~~~~~~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~ 136 (266)
T PRK06171 58 VSSAEEVNHTVAEIIEKFGRIDGLVNNAGINIPRLLVDEKDPAGKYELNEAAFDKMFNINQKGVFLMSQAVARQMVKQ-H 136 (266)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCcccCCccccccccccccccCCHHHHHHHHhhhchhHHHHHHHHHHHHHhc-C
Confidence 9999999999999999999999999999975421 123467899999999999999999999999999876 5
Q ss_pred CCeEEeecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCccc-CCcccCCcchhhhhhhhhhcCC
Q 010380 324 GGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVL-TDLLLSGSTIQNKQMFNIICEL 402 (512)
Q Consensus 324 ~g~IV~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~-T~~~~~~~~~~~~~~~~~~~~~ 402 (512)
.++||++||. .+..+.++...|++||+|+++|+++++.|++++||+||+|+||+++ |++....... .........
T Consensus 137 ~g~iv~isS~-~~~~~~~~~~~Y~~sK~a~~~l~~~la~e~~~~gi~v~~v~pG~~~~t~~~~~~~~~---~~~~~~~~~ 212 (266)
T PRK06171 137 DGVIVNMSSE-AGLEGSEGQSCYAATKAALNSFTRSWAKELGKHNIRVVGVAPGILEATGLRTPEYEE---ALAYTRGIT 212 (266)
T ss_pred CcEEEEEccc-cccCCCCCCchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeccccccCCCcChhhhh---hhccccCCC
Confidence 6899999988 5677788899999999999999999999999999999999999997 6664321100 000000001
Q ss_pred HHH----H-H--HHhccccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 403 PET----V-A--RTLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 403 pe~----v-A--~~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
+++ . . ..+++++..|+|++.++.||+++...+.++..+..||++
T Consensus 213 ~~~~~~~~~~~~~~p~~r~~~~~eva~~~~fl~s~~~~~itG~~i~vdgg~ 263 (266)
T PRK06171 213 VEQLRAGYTKTSTIPLGRSGKLSEVADLVCYLLSDRASYITGVTTNIAGGK 263 (266)
T ss_pred HHHHHhhhcccccccCCCCCCHHHhhhheeeeeccccccceeeEEEecCcc
Confidence 111 1 1 346789999999999999999988878888877777765
|
|
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=277.44 Aligned_cols=247 Identities=24% Similarity=0.322 Sum_probs=207.4
Q ss_pred cCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEcc
Q 010380 172 HCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACD 251 (512)
Q Consensus 172 ~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~D 251 (512)
.+++++|+++||||++|||+++|++|+++|++|++++|+++.+++..+++++ .+.++.++.||
T Consensus 6 ~~~~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~-----------------~~~~~~~~~~D 68 (256)
T PRK06124 6 RFSLAGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRA-----------------AGGAAEALAFD 68 (256)
T ss_pred ccCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHh-----------------cCCceEEEEcc
Confidence 5668999999999999999999999999999999999998888777776654 34568899999
Q ss_pred CCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeec
Q 010380 252 VCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD 331 (512)
Q Consensus 252 ltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vS 331 (512)
++|++++.++++++.+.++++|++|||||... ..++.+.+.++|++.+++|+.+++.+++.+++.|.++ +.++||++|
T Consensus 69 l~~~~~~~~~~~~~~~~~~~id~vi~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~iv~~s 146 (256)
T PRK06124 69 IADEEAVAAAFARIDAEHGRLDILVNNVGARD-RRPLAELDDAAIRALLETDLVAPILLSRLAAQRMKRQ-GYGRIIAIT 146 (256)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCEEEECCCCCC-CCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEEe
Confidence 99999999999999999999999999999876 5778899999999999999999999999999999876 568999999
Q ss_pred CCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhc
Q 010380 332 GAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLV 411 (512)
Q Consensus 332 S~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l 411 (512)
|. .+..+.++...|+++|++++++++.++.|+.+.||+|++|+||+++|++....... +... +......++
T Consensus 147 s~-~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~pg~v~t~~~~~~~~~--~~~~------~~~~~~~~~ 217 (256)
T PRK06124 147 SI-AGQVARAGDAVYPAAKQGLTGLMRALAAEFGPHGITSNAIAPGYFATETNAAMAAD--PAVG------PWLAQRTPL 217 (256)
T ss_pred ec-hhccCCCCccHhHHHHHHHHHHHHHHHHHHHHhCcEEEEEEECCccCcchhhhccC--hHHH------HHHHhcCCC
Confidence 87 56777889999999999999999999999999999999999999999975322110 1110 111122345
Q ss_pred cccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 412 PRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 412 ~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
+++..|++++.++.||+++...+.++..+..||++
T Consensus 218 ~~~~~~~~~a~~~~~l~~~~~~~~~G~~i~~dgg~ 252 (256)
T PRK06124 218 GRWGRPEEIAGAAVFLASPAASYVNGHVLAVDGGY 252 (256)
T ss_pred CCCCCHHHHHHHHHHHcCcccCCcCCCEEEECCCc
Confidence 67788999999999999987655556555555554
|
|
| >PRK08226 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=279.13 Aligned_cols=247 Identities=25% Similarity=0.316 Sum_probs=202.2
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
++.+|+++||||++|||+++|++|+++|++|++++|+.+ ..+..+++.. .+.++.++.||++
T Consensus 3 ~~~~~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~-~~~~~~~~~~-----------------~~~~~~~~~~Dl~ 64 (263)
T PRK08226 3 KLTGKTALITGALQGIGEGIARVFARHGANLILLDISPE-IEKLADELCG-----------------RGHRCTAVVADVR 64 (263)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHH-HHHHHHHHHH-----------------hCCceEEEECCCC
Confidence 467899999999999999999999999999999999874 3334444432 2356788999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
|+++++++++++.+.++++|+||||||... ..++.+.+.+++++.+++|+.+++.+++.++|.|.++ +.++||++||.
T Consensus 65 ~~~~v~~~~~~~~~~~~~id~vi~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~iv~isS~ 142 (263)
T PRK08226 65 DPASVAAAIKRAKEKEGRIDILVNNAGVCR-LGSFLDMSDEDRDFHIDINIKGVWNVTKAVLPEMIAR-KDGRIVMMSSV 142 (263)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCcCC-CCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhc-CCcEEEEECcH
Confidence 999999999999999999999999999876 5778889999999999999999999999999999775 46799999887
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHH-----HHH
Q 010380 334 GSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPET-----VAR 408 (512)
Q Consensus 334 ~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~-----vA~ 408 (512)
.+...+.+++..|+++|+++++++++++.|+.++||+||+|+||+++|+|.......... ..++. ...
T Consensus 143 ~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~i~pg~v~t~~~~~~~~~~~~-------~~~~~~~~~~~~~ 215 (263)
T PRK08226 143 TGDMVADPGETAYALTKAAIVGLTKSLAVEYAQSGIRVNAICPGYVRTPMAESIARQSNP-------EDPESVLTEMAKA 215 (263)
T ss_pred HhcccCCCCcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccCHHHHhhhhhccC-------CCcHHHHHHHhcc
Confidence 333456678899999999999999999999999999999999999999986432110000 01111 112
Q ss_pred HhccccccchhhhhhhhhcCChHHHHHHHHHHhccCccc
Q 010380 409 TLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWF 447 (512)
Q Consensus 409 ~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~ 447 (512)
.+++++..|+++++.+.||+++...+.++..+..||+..
T Consensus 216 ~p~~~~~~~~~va~~~~~l~~~~~~~~~g~~i~~dgg~~ 254 (263)
T PRK08226 216 IPLRRLADPLEVGELAAFLASDESSYLTGTQNVIDGGST 254 (263)
T ss_pred CCCCCCCCHHHHHHHHHHHcCchhcCCcCceEeECCCcc
Confidence 356678899999999999999877666777777776653
|
|
| >PRK12743 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-33 Score=276.31 Aligned_cols=241 Identities=20% Similarity=0.283 Sum_probs=200.7
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEEc-ChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCCh
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSGDRVVVASR-SSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEP 255 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R-~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~ 255 (512)
+|+++||||++|||+++|++|+++|++|+++.+ +.+.++.+.+++.. .+.++.++.+|++|+
T Consensus 2 ~k~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~Dl~~~ 64 (256)
T PRK12743 2 AQVAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRS-----------------HGVRAEIRQLDLSDL 64 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHh-----------------cCCceEEEEccCCCH
Confidence 689999999999999999999999999998865 55556666665544 356788999999999
Q ss_pred hhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCC
Q 010380 256 ADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGS 335 (512)
Q Consensus 256 ~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a 335 (512)
++++++++++.+.++++|+||||||... ..++.+.+.+++++++++|+.+++++++++.++|.+++++|+||++||. .
T Consensus 65 ~~~~~~~~~~~~~~~~id~li~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~-~ 142 (256)
T PRK12743 65 PEGAQALDKLIQRLGRIDVLVNNAGAMT-KAPFLDMDFDEWRKIFTVDVDGAFLCSQIAARHMVKQGQGGRIINITSV-H 142 (256)
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCCCC-CCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEEeec-c
Confidence 9999999999999999999999999876 4667888999999999999999999999999999876556899999987 5
Q ss_pred CCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhccccc
Q 010380 336 GGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPRIR 415 (512)
Q Consensus 336 ~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~r~~ 415 (512)
+..+.++...|+++|+++++++++++.++.++||+||+|+||+++|++...... .... ......++.+..
T Consensus 143 ~~~~~~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~Pg~~~t~~~~~~~~----~~~~------~~~~~~~~~~~~ 212 (256)
T PRK12743 143 EHTPLPGASAYTAAKHALGGLTKAMALELVEHGILVNAVAPGAIATPMNGMDDS----DVKP------DSRPGIPLGRPG 212 (256)
T ss_pred ccCCCCCcchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCccCccccccCh----HHHH------HHHhcCCCCCCC
Confidence 677888899999999999999999999999999999999999999998642111 0000 001123466788
Q ss_pred cchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 416 VVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 416 ~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
.|++++..+.||+++.....++..+..+|++
T Consensus 213 ~~~dva~~~~~l~~~~~~~~~G~~~~~dgg~ 243 (256)
T PRK12743 213 DTHEIASLVAWLCSEGASYTTGQSLIVDGGF 243 (256)
T ss_pred CHHHHHHHHHHHhCccccCcCCcEEEECCCc
Confidence 9999999999999887666666666666654
|
|
| >PRK06196 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-33 Score=284.64 Aligned_cols=268 Identities=17% Similarity=0.189 Sum_probs=199.5
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
.++++|+++||||++|||+++|++|+++|++|++++|+.+++++..+++. .+.++.+|+
T Consensus 22 ~~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l~---------------------~v~~~~~Dl 80 (315)
T PRK06196 22 HDLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVAREALAGID---------------------GVEVVMLDL 80 (315)
T ss_pred CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhh---------------------hCeEEEccC
Confidence 45789999999999999999999999999999999999887766655442 266789999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|.++++++++++.+.++++|+||||||+... ..+.+.++|+..+++|+.|+++++++++|.|.++ +.++||++||
T Consensus 81 ~d~~~v~~~~~~~~~~~~~iD~li~nAg~~~~---~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~-~~~~iV~vSS 156 (315)
T PRK06196 81 ADLESVRAFAERFLDSGRRIDILINNAGVMAC---PETRVGDGWEAQFATNHLGHFALVNLLWPALAAG-AGARVVALSS 156 (315)
T ss_pred CCHHHHHHHHHHHHhcCCCCCEEEECCCCCCC---CCccCCccHHHHHHHhhHHHHHHHHHHHHHHHhc-CCCeEEEECC
Confidence 99999999999999999999999999998542 2456778999999999999999999999999876 4689999998
Q ss_pred CCCCC-----------CCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcC
Q 010380 333 AGSGG-----------SSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICE 401 (512)
Q Consensus 333 ~~a~~-----------~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~ 401 (512)
.+... .+.+....|++||+|++.|++.++.++.++||+|++|+||+|.|++........... .....
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~-~~~~~- 234 (315)
T PRK06196 157 AGHRRSPIRWDDPHFTRGYDKWLAYGQSKTANALFAVHLDKLGKDQGVRAFSVHPGGILTPLQRHLPREEQVA-LGWVD- 234 (315)
T ss_pred HHhccCCCCccccCccCCCChHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeeCCcccCCccccCChhhhhh-hhhhh-
Confidence 63211 133456789999999999999999999999999999999999999864322110000 00000
Q ss_pred CHHHHHHHhcc-ccccchhhhhhhhhcCChHHHHHHHHHHhccCccc----------ccchhhhhHHHHHHHHHHHHHcc
Q 010380 402 LPETVARTLVP-RIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWF----------DDQGRALYAAEADRIRNWAENRA 470 (512)
Q Consensus 402 ~pe~vA~~~l~-r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~----------~~~~~~~~~~~~~rl~~w~~~~~ 470 (512)
....++. ++..|++++.++.||+...........+..+.... .....+.+...+++||+|+++..
T Consensus 235 ----~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lW~~s~~~~ 310 (315)
T PRK06196 235 ----EHGNPIDPGFKTPAQGAATQVWAATSPQLAGMGGLYCEDCDIAEPTPKDAPWSGVRPHAIDPEAAARLWALSAALT 310 (315)
T ss_pred ----hhhhhhhhhcCCHhHHHHHHHHHhcCCccCCCCCeEeCCCcccccCCcccccCCCCcccCCHHHHHHHHHHHHHHH
Confidence 0011222 45778888888888885432211222232222111 11223456778899999998754
Q ss_pred c
Q 010380 471 R 471 (512)
Q Consensus 471 ~ 471 (512)
.
T Consensus 311 ~ 311 (315)
T PRK06196 311 G 311 (315)
T ss_pred C
Confidence 3
|
|
| >PRK06841 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-33 Score=274.36 Aligned_cols=242 Identities=24% Similarity=0.343 Sum_probs=200.8
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
+++++|+++||||++|||.++|++|+++|++|++++|+.+.. +..+++ .+.++.++.+|+
T Consensus 11 ~~~~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~~~~-~~~~~~-------------------~~~~~~~~~~Dl 70 (255)
T PRK06841 11 FDLSGKVAVVTGGASGIGHAIAELFAAKGARVALLDRSEDVA-EVAAQL-------------------LGGNAKGLVCDV 70 (255)
T ss_pred cCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHHh-------------------hCCceEEEEecC
Confidence 568899999999999999999999999999999999987532 222222 124567899999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|+++++++++++.+.++++|++|||||... ..++.+.+.+++++++++|+.+++++++.+.|.|+++ +.++||++||
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~d~vi~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~iv~~sS 148 (255)
T PRK06841 71 SDSQSVEAAVAAVISAFGRIDILVNSAGVAL-LAPAEDVSEEDWDKTIDINLKGSFLMAQAVGRHMIAA-GGGKIVNLAS 148 (255)
T ss_pred CCHHHHHHHHHHHHHHhCCCCEEEECCCCCC-CCChhhCCHHHHHHHHHHhcHHHHHHHHHHHHHHHhc-CCceEEEEcc
Confidence 9999999999999999999999999999876 5777888999999999999999999999999999876 4689999998
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhcc
Q 010380 333 AGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVP 412 (512)
Q Consensus 333 ~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~ 412 (512)
. .+..+.+....|++||+|+++++++++.|++++||+||+|+||+|+|++......... ..+.....+.+
T Consensus 149 ~-~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~~~~~~---------~~~~~~~~~~~ 218 (255)
T PRK06841 149 Q-AGVVALERHVAYCASKAGVVGMTKVLALEWGPYGITVNAISPTVVLTELGKKAWAGEK---------GERAKKLIPAG 218 (255)
T ss_pred h-hhccCCCCCchHHHHHHHHHHHHHHHHHHHHhhCeEEEEEEeCcCcCcccccccchhH---------HHHHHhcCCCC
Confidence 7 5667888899999999999999999999999999999999999999998643211100 01112234567
Q ss_pred ccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 413 RIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 413 r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
++..|+++++.+.||+++.....++..+..||++
T Consensus 219 ~~~~~~~va~~~~~l~~~~~~~~~G~~i~~dgg~ 252 (255)
T PRK06841 219 RFAYPEEIAAAALFLASDAAAMITGENLVIDGGY 252 (255)
T ss_pred CCcCHHHHHHHHHHHcCccccCccCCEEEECCCc
Confidence 8889999999999999887666666666666654
|
|
| >KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=279.54 Aligned_cols=267 Identities=23% Similarity=0.274 Sum_probs=206.8
Q ss_pred ccccCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEE
Q 010380 169 LEEHCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGI 248 (512)
Q Consensus 169 ~~~~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v 248 (512)
.....++.+++++||||++|||+++|++|+++|++|++.+|+.++.+++++++.+.. ...++.++
T Consensus 27 ~~~~~~~~~~~~vVTGansGIG~eta~~La~~Ga~Vv~~~R~~~~~~~~~~~i~~~~---------------~~~~i~~~ 91 (314)
T KOG1208|consen 27 VTHGIDLSGKVALVTGATSGIGFETARELALRGAHVVLACRNEERGEEAKEQIQKGK---------------ANQKIRVI 91 (314)
T ss_pred eeccccCCCcEEEEECCCCchHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC---------------CCCceEEE
Confidence 345678899999999999999999999999999999999999999999999987622 34789999
Q ss_pred EccCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEE
Q 010380 249 ACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIF 328 (512)
Q Consensus 249 ~~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV 328 (512)
+||++|.++|+++++++.+.++++|+||||||++.+ ....+.|.+|.+|.+|++|+|++++.++|.|+.+. ++|||
T Consensus 92 ~lDLssl~SV~~fa~~~~~~~~~ldvLInNAGV~~~---~~~~t~DG~E~~~~tN~lg~flLt~lLlp~lk~s~-~~RIV 167 (314)
T KOG1208|consen 92 QLDLSSLKSVRKFAEEFKKKEGPLDVLINNAGVMAP---PFSLTKDGLELTFATNYLGHFLLTELLLPLLKRSA-PSRIV 167 (314)
T ss_pred ECCCCCHHHHHHHHHHHHhcCCCccEEEeCcccccC---CcccCccchhheehhhhHHHHHHHHHHHHHHhhCC-CCCEE
Confidence 999999999999999999999999999999999752 33788899999999999999999999999999874 49999
Q ss_pred eecCCCCCCCC------------CCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcch---hhh
Q 010380 329 NMDGAGSGGSS------------TPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTI---QNK 393 (512)
Q Consensus 329 ~vSS~~a~~~~------------~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~---~~~ 393 (512)
++||....... .....+|+.||.++..+++.|++.+.+ ||.+++++||.|.|+........ ..+
T Consensus 168 ~vsS~~~~~~~~~~~l~~~~~~~~~~~~~Y~~SKla~~l~~~eL~k~l~~-~V~~~~~hPG~v~t~~l~r~~~~~~~l~~ 246 (314)
T KOG1208|consen 168 NVSSILGGGKIDLKDLSGEKAKLYSSDAAYALSKLANVLLANELAKRLKK-GVTTYSVHPGVVKTTGLSRVNLLLRLLAK 246 (314)
T ss_pred EEcCccccCccchhhccchhccCccchhHHHHhHHHHHHHHHHHHHHhhc-CceEEEECCCcccccceecchHHHHHHHH
Confidence 99997431100 222345999999999999999999988 99999999999999943331111 111
Q ss_pred hhhhhhcCCHHHHHHHhccccccchhhhhhhhhcCChHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHc
Q 010380 394 QMFNIICELPETVARTLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWFDDQGRALYAAEADRIRNWAENR 469 (512)
Q Consensus 394 ~~~~~~~~~pe~vA~~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~rl~~w~~~~ 469 (512)
.....+..+|++.|++.+.....|+-..... .+..++........+.++..++++|+-.++.
T Consensus 247 ~l~~~~~ks~~~ga~t~~~~a~~p~~~~~sg--------------~y~~d~~~~~~~~~a~d~~~~~~lw~~s~~l 308 (314)
T KOG1208|consen 247 KLSWPLTKSPEQGAATTCYAALSPELEGVSG--------------KYFEDCAIAEPSEEALDEELAEKLWKFSEEL 308 (314)
T ss_pred HHHHHhccCHHHHhhheehhccCccccCccc--------------cccccccccccccccCCHHHHHHHHHHHHHH
Confidence 1222233466777777666555553222222 2233343333344667788888999887664
|
|
| >TIGR01289 LPOR light-dependent protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=281.49 Aligned_cols=269 Identities=15% Similarity=0.156 Sum_probs=192.5
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCC
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSG-DRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCE 254 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~G-a~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd 254 (512)
.+|+++||||++|||+++|++|+++| ++|++++|+.++++++.+++.. .+.++.++.+|++|
T Consensus 2 ~~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~~~~~~~~~~~l~~-----------------~~~~~~~~~~Dl~~ 64 (314)
T TIGR01289 2 QKPTVIITGASSGLGLYAAKALAATGEWHVIMACRDFLKAEQAAKSLGM-----------------PKDSYTIMHLDLGS 64 (314)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhcC-----------------CCCeEEEEEcCCCC
Confidence 37899999999999999999999999 9999999998887766665532 23567889999999
Q ss_pred hhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCC-CCCeEEeecCC
Q 010380 255 PADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQP-KGGHIFNMDGA 333 (512)
Q Consensus 255 ~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~-~~g~IV~vSS~ 333 (512)
.++++++++++.+.+++||+||||||+..+..+..+.+.++|++++++|+.|+++++++++|.|++++ +.++||++||.
T Consensus 65 ~~~v~~~~~~~~~~~~~iD~lI~nAG~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~l~~m~~~~~~~g~IV~vsS~ 144 (314)
T TIGR01289 65 LDSVRQFVQQFRESGRPLDALVCNAAVYFPTAKEPRFTADGFELSVGTNHLGHFLLCNLLLDDLKNSPNKDKRLIIVGSI 144 (314)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEECCCccccCccccccCHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCCeEEEEecC
Confidence 99999999999888899999999999854333445678999999999999999999999999998763 25899999997
Q ss_pred CCCC--------------------------------CCCCCcchhhHHHHHHHHHHHHHHHHhC-CCCeEEEEEeCCcc-
Q 010380 334 GSGG--------------------------------SSTPLTAVYGSTKCGLRQLQASLFKESK-RSKVGVHTASPGMV- 379 (512)
Q Consensus 334 ~a~~--------------------------------~~~p~~~~Y~aSKaAl~~l~~sLa~El~-~~GIrVn~V~PG~V- 379 (512)
.+.. .+..+..+|++||+|+..+++.|++++. +.||+|++|+||+|
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~ 224 (314)
T TIGR01289 145 TGNTNTLAGNVPPKANLGDLSGLAAGFKAPIAMIDGKEFKGAKAYKDSKVCNMLTVRELHRRFHDETGITFASLYPGCIA 224 (314)
T ss_pred ccccccCCCcCCCcccccccccccccCCCcccccCCCCcchhhhHHHhHHHHHHHHHHHHHHhccCCCeEEEEecCCccc
Confidence 4311 0112456799999999999999999995 46999999999999
Q ss_pred cCCcccCCcchhhhhhhhhhcCCHHHHHHHhccccccchhhhhhhhhcCChHHHHHHHHHHhcc-Cc----ccccchhhh
Q 010380 380 LTDLLLSGSTIQNKQMFNIICELPETVARTLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRR-GR----WFDDQGRAL 454 (512)
Q Consensus 380 ~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~-g~----~~~~~~~~~ 454 (512)
+|+|........ ...+.. ..+.+.+....+++.+..+.++..+......+ .|+.. +. .......+.
T Consensus 225 ~T~l~~~~~~~~-~~~~~~-------~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~ 295 (314)
T TIGR01289 225 DTGLFREHVPLF-RTLFPP-------FQKYITKGYVSEEEAGERLAQVVSDPKLKKSG-VYWSWGNRQESFVNQLSEEVS 295 (314)
T ss_pred CCcccccccHHH-HHHHHH-------HHHHHhccccchhhhhhhhHHhhcCcccCCCc-eeeecCCcccccccCCChhhc
Confidence 699875422111 111110 11111222344444444444433321111111 11111 11 012233466
Q ss_pred hHHHHHHHHHHHHHcc
Q 010380 455 YAAEADRIRNWAENRA 470 (512)
Q Consensus 455 ~~~~~~rl~~w~~~~~ 470 (512)
+...+++||+|+++..
T Consensus 296 ~~~~~~~lw~~~~~~~ 311 (314)
T TIGR01289 296 DDSKASKMWDLSEKLV 311 (314)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 7788999999998753
|
This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form. |
| >PRK06949 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=271.85 Aligned_cols=246 Identities=21% Similarity=0.298 Sum_probs=205.3
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
.++.+|+++||||++|||+++|++|+++|++|++++|+.++++++..++.. .+.++.++.+|+
T Consensus 5 ~~~~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~-----------------~~~~~~~~~~D~ 67 (258)
T PRK06949 5 INLEGKVALVTGASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEA-----------------EGGAAHVVSLDV 67 (258)
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-----------------cCCcEEEEEecC
Confidence 457899999999999999999999999999999999999888777666543 235688899999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCC-------CC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPK-------GG 325 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~-------~g 325 (512)
+++++++++++++.+.++++|++|||||... ..++.+.+.++++.++++|+.+++.++++++|.|.++.. .+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~d~li~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 146 (258)
T PRK06949 68 TDYQSIKAAVAHAETEAGTIDILVNNSGVST-TQKLVDVTPADFDFVFDTNTRGAFFVAQEVAKRMIARAKGAGNTKPGG 146 (258)
T ss_pred CCHHHHHHHHHHHHHhcCCCCEEEECCCCCC-CCCcccCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcCCCCCCCe
Confidence 9999999999999999999999999999866 567778889999999999999999999999999986632 47
Q ss_pred eEEeecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHH
Q 010380 326 HIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPET 405 (512)
Q Consensus 326 ~IV~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~ 405 (512)
+||+++|. .+..+.+....|+++|++++.+++.++.|+.+.||+|++|+||+|+|++.......... ...
T Consensus 147 ~iv~~sS~-~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~---------~~~ 216 (258)
T PRK06949 147 RIINIASV-AGLRVLPQIGLYCMSKAAVVHMTRAMALEWGRHGINVNAICPGYIDTEINHHHWETEQG---------QKL 216 (258)
T ss_pred EEEEECcc-cccCCCCCccHHHHHHHHHHHHHHHHHHHHHhcCeEEEEEeeCCCcCCcchhccChHHH---------HHH
Confidence 99999987 56667788899999999999999999999999999999999999999986432211000 011
Q ss_pred HHHHhccccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 406 VARTLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 406 vA~~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
....+..++..|++++..+.||+++...+.++..+..||++
T Consensus 217 ~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~G~~i~~dgg~ 257 (258)
T PRK06949 217 VSMLPRKRVGKPEDLDGLLLLLAADESQFINGAIISADDGF 257 (258)
T ss_pred HhcCCCCCCcCHHHHHHHHHHHhChhhcCCCCcEEEeCCCC
Confidence 11224568899999999999999987766666666666543
|
|
| >PRK05717 oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=271.97 Aligned_cols=244 Identities=21% Similarity=0.278 Sum_probs=198.0
Q ss_pred cccCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEE
Q 010380 170 EEHCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIA 249 (512)
Q Consensus 170 ~~~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~ 249 (512)
.+.++++||+++||||++|||+++|++|+++|++|++++|+.++.++..+++ +.++.++.
T Consensus 3 ~~~~~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~--------------------~~~~~~~~ 62 (255)
T PRK05717 3 EPNPGHNGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDRERGSKVAKAL--------------------GENAWFIA 62 (255)
T ss_pred CCCcccCCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHc--------------------CCceEEEE
Confidence 3567889999999999999999999999999999999999877655433221 24678899
Q ss_pred ccCCChhhHHHHHHHHHHHcCCCcccccccccCCC-CCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEE
Q 010380 250 CDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKG-FKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIF 328 (512)
Q Consensus 250 ~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~-~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV 328 (512)
+|++|.++++++++++.++++++|+||||||...+ ..++.+.+.++|++.+++|+.+++.++++++|+|.+. .|+||
T Consensus 63 ~Dl~~~~~~~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~--~g~ii 140 (255)
T PRK05717 63 MDVADEAQVAAGVAEVLGQFGRLDALVCNAAIADPHNTTLESLSLAHWNRVLAVNLTGPMLLAKHCAPYLRAH--NGAIV 140 (255)
T ss_pred ccCCCHHHHHHHHHHHHHHhCCCCEEEECCCcccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc--CcEEE
Confidence 99999999999999999999999999999998652 2567788999999999999999999999999999764 57999
Q ss_pred eecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHH
Q 010380 329 NMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVAR 408 (512)
Q Consensus 329 ~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~ 408 (512)
++||. .+..+.+....|++||+|++++++.++.|+.+ +|+|++|+||+++|++..... .... .......
T Consensus 141 ~~sS~-~~~~~~~~~~~Y~~sKaa~~~~~~~la~~~~~-~i~v~~i~Pg~i~t~~~~~~~---~~~~------~~~~~~~ 209 (255)
T PRK05717 141 NLAST-RARQSEPDTEAYAASKGGLLALTHALAISLGP-EIRVNAVSPGWIDARDPSQRR---AEPL------SEADHAQ 209 (255)
T ss_pred EEcch-hhcCCCCCCcchHHHHHHHHHHHHHHHHHhcC-CCEEEEEecccCcCCcccccc---chHH------HHHHhhc
Confidence 99987 56677788899999999999999999999986 499999999999999753211 0000 0111224
Q ss_pred HhccccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 409 TLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 409 ~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
.+..++..|++++..+.|++++...+.++..+..+|++
T Consensus 210 ~~~~~~~~~~~va~~~~~l~~~~~~~~~g~~~~~~gg~ 247 (255)
T PRK05717 210 HPAGRVGTVEDVAAMVAWLLSRQAGFVTGQEFVVDGGM 247 (255)
T ss_pred CCCCCCcCHHHHHHHHHHHcCchhcCccCcEEEECCCc
Confidence 45678889999999999999876544444444444443
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-32 Score=282.38 Aligned_cols=223 Identities=29% Similarity=0.380 Sum_probs=188.6
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
++++|+++||||++|||+++|++|+++|++|++++|+++++++..+++.+ .+.++.++.+|++
T Consensus 5 ~l~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~-----------------~g~~~~~v~~Dv~ 67 (334)
T PRK07109 5 PIGRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRA-----------------AGGEALAVVADVA 67 (334)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHH-----------------cCCcEEEEEecCC
Confidence 57789999999999999999999999999999999999888887777754 3567889999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
|+++++++++.+.+++|++|++|||||... ..++.+.+.+++++++++|+.|++++++.++|+|+++ +.|+||++||.
T Consensus 68 d~~~v~~~~~~~~~~~g~iD~lInnAg~~~-~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~-~~g~iV~isS~ 145 (334)
T PRK07109 68 DAEAVQAAADRAEEELGPIDTWVNNAMVTV-FGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPR-DRGAIIQVGSA 145 (334)
T ss_pred CHHHHHHHHHHHHHHCCCCCEEEECCCcCC-CCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEeCCh
Confidence 999999999999999999999999999876 6788899999999999999999999999999999886 56899999998
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCC--CCeEEEEEeCCcccCCcccCCcchhhhhhh-hhhcCCHHHHHHHh
Q 010380 334 GSGGSSTPLTAVYGSTKCGLRQLQASLFKESKR--SKVGVHTASPGMVLTDLLLSGSTIQNKQMF-NIICELPETVARTL 410 (512)
Q Consensus 334 ~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~--~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~-~~~~~~pe~vA~~~ 410 (512)
.+..+.|....|++||+++++|+++++.|+.. .+|+|++|+||.|+||+............. .....+|+++|+.+
T Consensus 146 -~~~~~~~~~~~Y~asK~a~~~~~~~l~~el~~~~~~I~v~~v~Pg~v~T~~~~~~~~~~~~~~~~~~~~~~pe~vA~~i 224 (334)
T PRK07109 146 -LAYRSIPLQSAYCAAKHAIRGFTDSLRCELLHDGSPVSVTMVQPPAVNTPQFDWARSRLPVEPQPVPPIYQPEVVADAI 224 (334)
T ss_pred -hhccCCCcchHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCccCchhhhhhhhccccccCCCCCCCHHHHHHHH
Confidence 67778889999999999999999999999974 479999999999999986432111000000 01123677777777
Q ss_pred cccccc
Q 010380 411 VPRIRV 416 (512)
Q Consensus 411 l~r~~~ 416 (512)
+..+..
T Consensus 225 ~~~~~~ 230 (334)
T PRK07109 225 LYAAEH 230 (334)
T ss_pred HHHHhC
Confidence 655543
|
|
| >PRK07825 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=272.79 Aligned_cols=216 Identities=27% Similarity=0.355 Sum_probs=187.3
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
+++++++++||||++|||+++|++|+++|++|++++|+++++++..+++ .++.++.||+
T Consensus 1 ~~~~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~---------------------~~~~~~~~D~ 59 (273)
T PRK07825 1 DDLRGKVVAITGGARGIGLATARALAALGARVAIGDLDEALAKETAAEL---------------------GLVVGGPLDV 59 (273)
T ss_pred CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---------------------ccceEEEccC
Confidence 3577899999999999999999999999999999999988776554443 1467789999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|+++++++++.+.+.++++|++|||||+.. ..++.+.+.+++++++++|+.|++.+++.++|.|.++ +.|+||++||
T Consensus 60 ~~~~~~~~~~~~~~~~~~~id~li~~ag~~~-~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~-~~g~iv~isS 137 (273)
T PRK07825 60 TDPASFAAFLDAVEADLGPIDVLVNNAGVMP-VGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPR-GRGHVVNVAS 137 (273)
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCcCC-CCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCEEEEEcC
Confidence 9999999999999999999999999999986 6788889999999999999999999999999999987 5789999999
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhcc
Q 010380 333 AGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVP 412 (512)
Q Consensus 333 ~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~ 412 (512)
. ++..+.++...|++||+++++|+++|+.|+.+.||+|++|+||+++|++....... ......+|+++|+.++.
T Consensus 138 ~-~~~~~~~~~~~Y~asKaa~~~~~~~l~~el~~~gi~v~~v~Pg~v~t~~~~~~~~~-----~~~~~~~~~~va~~~~~ 211 (273)
T PRK07825 138 L-AGKIPVPGMATYCASKHAVVGFTDAARLELRGTGVHVSVVLPSFVNTELIAGTGGA-----KGFKNVEPEDVAAAIVG 211 (273)
T ss_pred c-cccCCCCCCcchHHHHHHHHHHHHHHHHHhhccCcEEEEEeCCcCcchhhcccccc-----cCCCCCCHHHHHHHHHH
Confidence 8 67788899999999999999999999999999999999999999999987543111 11223478999988876
Q ss_pred ccccc
Q 010380 413 RIRVV 417 (512)
Q Consensus 413 r~~~~ 417 (512)
.+..+
T Consensus 212 ~l~~~ 216 (273)
T PRK07825 212 TVAKP 216 (273)
T ss_pred HHhCC
Confidence 65543
|
|
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=272.28 Aligned_cols=248 Identities=21% Similarity=0.271 Sum_probs=200.6
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
.+.+|+++||||++|||+++|++|+++|++|++++|+++++++..+++.. .+.++.++.+|++
T Consensus 2 ~l~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-----------------~~~~~~~~~~D~~ 64 (258)
T PRK07890 2 LLKGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDD-----------------LGRRALAVPTDIT 64 (258)
T ss_pred ccCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHH-----------------hCCceEEEecCCC
Confidence 35789999999999999999999999999999999998887776666643 2457889999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
|+++++++++++.++++++|++|||||...+..++.+.+.+++++++++|+.+++.+++++.+.|.+. +++||++||.
T Consensus 65 ~~~~~~~~~~~~~~~~g~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~--~~~ii~~sS~ 142 (258)
T PRK07890 65 DEDQCANLVALALERFGRVDALVNNAFRVPSMKPLADADFAHWRAVIELNVLGTLRLTQAFTPALAES--GGSIVMINSM 142 (258)
T ss_pred CHHHHHHHHHHHHHHcCCccEEEECCccCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhC--CCEEEEEech
Confidence 99999999999999999999999999986534677888999999999999999999999999999765 4799999987
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHH-----HHH
Q 010380 334 GSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPET-----VAR 408 (512)
Q Consensus 334 ~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~-----vA~ 408 (512)
....+.++...|+++|++++.++++++.|++++||+|++|+||++.|++........... .....+. ...
T Consensus 143 -~~~~~~~~~~~Y~~sK~a~~~l~~~~a~~~~~~~i~v~~v~pg~v~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 217 (258)
T PRK07890 143 -VLRHSQPKYGAYKMAKGALLAASQSLATELGPQGIRVNSVAPGYIWGDPLKGYFRHQAGK----YGVTVEQIYAETAAN 217 (258)
T ss_pred -hhccCCCCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEeCCccCcHHHHHHhhhcccc----cCCCHHHHHHHHhhc
Confidence 566778889999999999999999999999999999999999999999753211100000 0001111 122
Q ss_pred HhccccccchhhhhhhhhcCChHHHHHHHHHHhccCc
Q 010380 409 TLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGR 445 (512)
Q Consensus 409 ~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~ 445 (512)
..+.++..|+|++.++.|++++.....++..+..+|+
T Consensus 218 ~~~~~~~~~~dva~a~~~l~~~~~~~~~G~~i~~~gg 254 (258)
T PRK07890 218 SDLKRLPTDDEVASAVLFLASDLARAITGQTLDVNCG 254 (258)
T ss_pred CCccccCCHHHHHHHHHHHcCHhhhCccCcEEEeCCc
Confidence 3456678899999999999987554444444444444
|
|
| >TIGR01500 sepiapter_red sepiapterin reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=272.29 Aligned_cols=229 Identities=20% Similarity=0.246 Sum_probs=186.1
Q ss_pred EEEEECCCChHHHHHHHHHHH----CCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCC
Q 010380 179 NVVITGSTRGLGKALAREFLL----SGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCE 254 (512)
Q Consensus 179 ~vLVTGassGIG~aiA~~La~----~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd 254 (512)
+++||||++|||+++|++|++ +|++|++++|+.+.++++.+++.... .+.++.++.+|++|
T Consensus 2 ~vlItGas~GIG~~~a~~la~~~~~~g~~V~~~~r~~~~~~~~~~~l~~~~---------------~~~~v~~~~~Dl~~ 66 (256)
T TIGR01500 2 VCLVTGASRGFGRTIAQELAKCLKSPGSVLVLSARNDEALRQLKAEIGAER---------------SGLRVVRVSLDLGA 66 (256)
T ss_pred EEEEecCCCchHHHHHHHHHHhhccCCcEEEEEEcCHHHHHHHHHHHHhcC---------------CCceEEEEEeccCC
Confidence 689999999999999999997 79999999999998888777775411 23578899999999
Q ss_pred hhhHHHHHHHHHHHcCCC----cccccccccCCCCC-CCcCC-CHHHHHHHHHhhhhhHHHHHHHHHHHHHhCC-CCCeE
Q 010380 255 PADVQKLSNFAVNEFGSI----DIWINNAGTNKGFK-PLLQF-TNEEIEQIVSTNLVGSILCTREAMRVMRDQP-KGGHI 327 (512)
Q Consensus 255 ~~sv~~~~~~i~~~~g~I----DvLInnAG~~~~~~-~~~~~-s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~-~~g~I 327 (512)
+++++++++.+.+.++.+ |+||||||...... ...+. +.++|++++++|+.+++++++.++|.|+++. ..++|
T Consensus 67 ~~~v~~~~~~~~~~~g~~~~~~~~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~~~l~~~~~~~~~i 146 (256)
T TIGR01500 67 EAGLEQLLKALRELPRPKGLQRLLLINNAGTLGDVSKGFVDLSDSTQVQNYWALNLTSMLCLTSSVLKAFKDSPGLNRTV 146 (256)
T ss_pred HHHHHHHHHHHHhccccCCCceEEEEeCCcccCccccccccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCCCCCEE
Confidence 999999999998887653 69999999754222 23333 5789999999999999999999999998752 35799
Q ss_pred EeecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchh-hhhhhhhhcCCHHHH
Q 010380 328 FNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQ-NKQMFNIICELPETV 406 (512)
Q Consensus 328 V~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~-~~~~~~~~~~~pe~v 406 (512)
|++||. ++..+.++...|++||+|+++|+++|+.|+++.||+||+|+||+|+|+|........ .... .....
T Consensus 147 v~isS~-~~~~~~~~~~~Y~asKaal~~l~~~la~e~~~~~i~v~~v~PG~v~T~~~~~~~~~~~~~~~------~~~~~ 219 (256)
T TIGR01500 147 VNISSL-CAIQPFKGWALYCAGKAARDMLFQVLALEEKNPNVRVLNYAPGVLDTDMQQQVREESVDPDM------RKGLQ 219 (256)
T ss_pred EEECCH-HhCCCCCCchHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHhcCChhH------HHHHH
Confidence 999998 577788899999999999999999999999999999999999999999864211000 0000 11223
Q ss_pred HHHhccccccchhhhhhhhhcCC
Q 010380 407 ARTLVPRIRVVKGSGKAINYLTP 429 (512)
Q Consensus 407 A~~~l~r~~~~~~va~~v~~L~s 429 (512)
...+++++..|+|++..+.||++
T Consensus 220 ~~~~~~~~~~p~eva~~~~~l~~ 242 (256)
T TIGR01500 220 ELKAKGKLVDPKVSAQKLLSLLE 242 (256)
T ss_pred HHHhcCCCCCHHHHHHHHHHHHh
Confidence 45567889999999999999985
|
This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs. |
| >TIGR02415 23BDH acetoin reductases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=270.85 Aligned_cols=249 Identities=24% Similarity=0.365 Sum_probs=203.5
Q ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhh
Q 010380 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPAD 257 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~s 257 (512)
|+++||||++|||.+++++|+++|++|++++|+.+.+++..+++.+ .+.++.++.+|++|+++
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~-----------------~~~~~~~~~~Dl~~~~~ 63 (254)
T TIGR02415 1 KVALVTGGAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQ-----------------AGGKAVAYKLDVSDKDQ 63 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-----------------cCCeEEEEEcCCCCHHH
Confidence 6899999999999999999999999999999998877777666654 34678899999999999
Q ss_pred HHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCCC
Q 010380 258 VQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGG 337 (512)
Q Consensus 258 v~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~~ 337 (512)
+.++++.+.+.++++|+||||||... ..++.+.+.++|++++++|+.+++.+++.+++.|++.+.+++||++||. .+.
T Consensus 64 i~~~~~~~~~~~~~id~vi~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~-~~~ 141 (254)
T TIGR02415 64 VFSAIDQAAEKFGGFDVMVNNAGVAP-ITPILEITEEELKKVYNVNVKGVLFGIQAAARQFKKQGHGGKIINAASI-AGH 141 (254)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCcCC-CCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEecch-hhc
Confidence 99999999999999999999999876 5788899999999999999999999999999999887556899999987 566
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcC-CHHHHHHHhcccccc
Q 010380 338 SSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICE-LPETVARTLVPRIRV 416 (512)
Q Consensus 338 ~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~-~pe~vA~~~l~r~~~ 416 (512)
.+.+....|++||++++.|++.++.|+.+.||+|++|+||+++|++.........+........ ........++++...
T Consensus 142 ~~~~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~Pg~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (254)
T TIGR02415 142 EGNPILSAYSSTKFAVRGLTQTAAQELAPKGITVNAYCPGIVKTPMWEEIDEETSEIAGKPIGEGFEEFSSEIALGRPSE 221 (254)
T ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccChhhhhhhhhhhhcccCchHHHHHHHHhhCCCCCCCC
Confidence 7788999999999999999999999999999999999999999998643221111100000000 011123345677899
Q ss_pred chhhhhhhhhcCChHHHHHHHHHHhccCc
Q 010380 417 VKGSGKAINYLTPPRILLALVTAWLRRGR 445 (512)
Q Consensus 417 ~~~va~~v~~L~s~~~~~~~~~~~~~~g~ 445 (512)
|+++++++.||+++.....++..+..||+
T Consensus 222 ~~~~a~~~~~l~~~~~~~~~g~~~~~d~g 250 (254)
T TIGR02415 222 PEDVAGLVSFLASEDSDYITGQSILVDGG 250 (254)
T ss_pred HHHHHHHHHhhcccccCCccCcEEEecCC
Confidence 99999999999998765555555555543
|
One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733). |
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-32 Score=276.04 Aligned_cols=225 Identities=21% Similarity=0.311 Sum_probs=188.7
Q ss_pred cccccCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEE
Q 010380 168 VLEEHCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAG 247 (512)
Q Consensus 168 ~~~~~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~ 247 (512)
..++.+++.+|+++||||++|||+++|++|+++|++|++++|+.+.+++..+++.+ .+.++.+
T Consensus 31 ~~~~~~~~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~-----------------~~~~~~~ 93 (293)
T PRK05866 31 PPRQPVDLTGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITR-----------------AGGDAMA 93 (293)
T ss_pred CCCCCcCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh-----------------cCCcEEE
Confidence 44456778999999999999999999999999999999999999888777776644 2456888
Q ss_pred EEccCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCC--CHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCC
Q 010380 248 IACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQF--TNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGG 325 (512)
Q Consensus 248 v~~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~--s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g 325 (512)
+.+|++|++++.++++++.+.++++|++|||||+.. ..++.+. +.++++.++++|+.|++.++++++|.|+++ +.|
T Consensus 94 ~~~Dl~d~~~v~~~~~~~~~~~g~id~li~~AG~~~-~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g 171 (293)
T PRK05866 94 VPCDLSDLDAVDALVADVEKRIGGVDILINNAGRSI-RRPLAESLDRWHDVERTMVLNYYAPLRLIRGLAPGMLER-GDG 171 (293)
T ss_pred EEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCC-CcchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCc
Confidence 999999999999999999999999999999999876 4555443 457899999999999999999999999876 568
Q ss_pred eEEeecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHH
Q 010380 326 HIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPET 405 (512)
Q Consensus 326 ~IV~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~ 405 (512)
+||++||.+....+.|+...|++||+|+++|+++++.|+.++||+|++|+||+|+|++....... ......+|++
T Consensus 172 ~iv~isS~~~~~~~~p~~~~Y~asKaal~~l~~~la~e~~~~gI~v~~v~pg~v~T~~~~~~~~~-----~~~~~~~pe~ 246 (293)
T PRK05866 172 HIINVATWGVLSEASPLFSVYNASKAALSAVSRVIETEWGDRGVHSTTLYYPLVATPMIAPTKAY-----DGLPALTADE 246 (293)
T ss_pred EEEEECChhhcCCCCCCcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEEcCcccCccccccccc-----cCCCCCCHHH
Confidence 99999987332234678889999999999999999999999999999999999999997532211 1112348999
Q ss_pred HHHHhcccccc
Q 010380 406 VARTLVPRIRV 416 (512)
Q Consensus 406 vA~~~l~r~~~ 416 (512)
+|+.++..+..
T Consensus 247 vA~~~~~~~~~ 257 (293)
T PRK05866 247 AAEWMVTAART 257 (293)
T ss_pred HHHHHHHHHhc
Confidence 99988876654
|
|
| >PRK12938 acetyacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=269.38 Aligned_cols=241 Identities=21% Similarity=0.282 Sum_probs=196.6
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEE-EcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 175 AGPRNVVITGSTRGLGKALAREFLLSGDRVVVA-SRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 175 l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~-~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
+++|+++||||++|||+++|++|+++|++|++. +++....++..+++.+ .+.++.++.||++
T Consensus 1 ~~~k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~D~~ 63 (246)
T PRK12938 1 MSQRIAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNSPRRVKWLEDQKA-----------------LGFDFIASEGNVG 63 (246)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHh-----------------cCCcEEEEEcCCC
Confidence 468999999999999999999999999998885 4455555555555433 3457888999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
|.+++.++++++.+.++++|+||||||... ..++.+.+.++|++++++|+.+++.++++++|.|.++ +.++||++||.
T Consensus 64 ~~~~~~~~~~~~~~~~~~id~li~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~iv~isS~ 141 (246)
T PRK12938 64 DWDSTKAAFDKVKAEVGEIDVLVNNAGITR-DVVFRKMTREDWTAVIDTNLTSLFNVTKQVIDGMVER-GWGRIINISSV 141 (246)
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCCCCC-CCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCeEEEEEech
Confidence 999999999999999999999999999876 4678889999999999999999999999999999876 56899999987
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhccc
Q 010380 334 GSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPR 413 (512)
Q Consensus 334 ~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~r 413 (512)
.+..+.++...|+++|++++.|+++++.|+.+.||++|+|+||+++|++.....+ ... .......+..+
T Consensus 142 -~~~~~~~~~~~y~~sK~a~~~~~~~l~~~~~~~gi~v~~i~pg~~~t~~~~~~~~----~~~------~~~~~~~~~~~ 210 (246)
T PRK12938 142 -NGQKGQFGQTNYSTAKAGIHGFTMSLAQEVATKGVTVNTVSPGYIGTDMVKAIRP----DVL------EKIVATIPVRR 210 (246)
T ss_pred -hccCCCCCChhHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEecccCCchhhhcCh----HHH------HHHHhcCCccC
Confidence 5667778899999999999999999999999999999999999999998643211 110 11112234567
Q ss_pred cccchhhhhhhhhcCChHHHHHHHHHHhccCc
Q 010380 414 IRVVKGSGKAINYLTPPRILLALVTAWLRRGR 445 (512)
Q Consensus 414 ~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~ 445 (512)
+..+++++..+.||+++.....++..+..+|+
T Consensus 211 ~~~~~~v~~~~~~l~~~~~~~~~g~~~~~~~g 242 (246)
T PRK12938 211 LGSPDEIGSIVAWLASEESGFSTGADFSLNGG 242 (246)
T ss_pred CcCHHHHHHHHHHHcCcccCCccCcEEEECCc
Confidence 78899999999999987655545544444443
|
|
| >PRK08278 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=275.02 Aligned_cols=229 Identities=19% Similarity=0.246 Sum_probs=189.0
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhh-------HHHHHHHHHHHHhhhhhhcCCCCcccccCceE
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSES-------VRMTVTELEENLKEGMMAAGGSSKKNLVHAKV 245 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~-------l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v 245 (512)
+++++|+++||||++|||.++|++|+++|++|++++|+.+. +++..+++.. .+.++
T Consensus 2 ~~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~-----------------~~~~~ 64 (273)
T PRK08278 2 MSLSGKTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEA-----------------AGGQA 64 (273)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHh-----------------cCCce
Confidence 45788999999999999999999999999999999998653 2333333322 34578
Q ss_pred EEEEccCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCC
Q 010380 246 AGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGG 325 (512)
Q Consensus 246 ~~v~~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g 325 (512)
.++.+|++|++++.++++++.+.++++|+||||||... ..++.+.+.+++++++++|+.++++++++++|.|+++ ++|
T Consensus 65 ~~~~~D~~~~~~i~~~~~~~~~~~g~id~li~~ag~~~-~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~-~~g 142 (273)
T PRK08278 65 LPLVGDVRDEDQVAAAVAKAVERFGGIDICVNNASAIN-LTGTEDTPMKRFDLMQQINVRGTFLVSQACLPHLKKS-ENP 142 (273)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHhCCCCEEEECCCCcC-CCCcccCCHHHHHHHHHHhchHHHHHHHHHHHHHHhc-CCC
Confidence 89999999999999999999999999999999999876 5778889999999999999999999999999999876 568
Q ss_pred eEEeecCCCCCCCCC--CCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCC-cccCCcccCCcchhhhhhhhhhcCC
Q 010380 326 HIFNMDGAGSGGSST--PLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPG-MVLTDLLLSGSTIQNKQMFNIICEL 402 (512)
Q Consensus 326 ~IV~vSS~~a~~~~~--p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG-~V~T~~~~~~~~~~~~~~~~~~~~~ 402 (512)
+||++||. .+..+. ++...|++||+|+++|+++++.|+.++||+||+|+|| +++|++.......
T Consensus 143 ~iv~iss~-~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~el~~~~I~v~~i~Pg~~i~t~~~~~~~~~------------ 209 (273)
T PRK08278 143 HILTLSPP-LNLDPKWFAPHTAYTMAKYGMSLCTLGLAEEFRDDGIAVNALWPRTTIATAAVRNLLGG------------ 209 (273)
T ss_pred EEEEECCc-hhccccccCCcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEeCCCccccHHHHhcccc------------
Confidence 99999987 455555 7889999999999999999999999999999999999 6899864321100
Q ss_pred HHHHHHHhccccccchhhhhhhhhcCChHHHHHHHH
Q 010380 403 PETVARTLVPRIRVVKGSGKAINYLTPPRILLALVT 438 (512)
Q Consensus 403 pe~vA~~~l~r~~~~~~va~~v~~L~s~~~~~~~~~ 438 (512)
..+.+++..|+++++.+.+++++.....++.
T Consensus 210 -----~~~~~~~~~p~~va~~~~~l~~~~~~~~~G~ 240 (273)
T PRK08278 210 -----DEAMRRSRTPEIMADAAYEILSRPAREFTGN 240 (273)
T ss_pred -----cccccccCCHHHHHHHHHHHhcCccccceeE
Confidence 0123456788888888888887765444443
|
|
| >PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-32 Score=268.09 Aligned_cols=243 Identities=23% Similarity=0.292 Sum_probs=195.3
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcC-hhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEcc
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRS-SESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACD 251 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~-~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~D 251 (512)
|++++|+++||||++|||+++|+.|+++|++|+++.++ .+..+....+ .+.++.++.+|
T Consensus 1 ~~l~~k~ilItGas~gIG~~la~~l~~~G~~vv~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~D 60 (253)
T PRK08642 1 MQISEQTVLVTGGSRGLGAAIARAFAREGARVVVNYHQSEDAAEALADE--------------------LGDRAIALQAD 60 (253)
T ss_pred CCCCCCEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHH--------------------hCCceEEEEcC
Confidence 46788999999999999999999999999999987654 4443332222 12468889999
Q ss_pred CCChhhHHHHHHHHHHHcCC-CcccccccccCC-----CCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCC
Q 010380 252 VCEPADVQKLSNFAVNEFGS-IDIWINNAGTNK-----GFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGG 325 (512)
Q Consensus 252 ltd~~sv~~~~~~i~~~~g~-IDvLInnAG~~~-----~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g 325 (512)
++|+++++++++++.+.+++ +|++|||||... ...++.+.+.+++++++++|+.++++++++++|.|.++ +.|
T Consensus 61 ~~~~~~~~~~~~~~~~~~g~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~g 139 (253)
T PRK08642 61 VTDREQVQAMFATATEHFGKPITTVVNNALADFSFDGDARKKADDITWEDFQQQLEGSVKGALNTIQAALPGMREQ-GFG 139 (253)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCeEEEECCCccccccccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHHHHhc-CCe
Confidence 99999999999999999887 999999999742 12457788999999999999999999999999999765 468
Q ss_pred eEEeecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHH
Q 010380 326 HIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPET 405 (512)
Q Consensus 326 ~IV~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~ 405 (512)
+||+++|. ....+.++...|++||+|+++|++++++|+.++||+||+|+||+++|++...... ..... ..
T Consensus 140 ~iv~iss~-~~~~~~~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~i~pG~v~t~~~~~~~~---~~~~~------~~ 209 (253)
T PRK08642 140 RIINIGTN-LFQNPVVPYHDYTTAKAALLGLTRNLAAELGPYGITVNMVSGGLLRTTDASAATP---DEVFD------LI 209 (253)
T ss_pred EEEEECCc-cccCCCCCccchHHHHHHHHHHHHHHHHHhCccCeEEEEEeecccCCchhhccCC---HHHHH------HH
Confidence 99999987 4555666778999999999999999999999999999999999999986432111 11100 01
Q ss_pred HHHHhccccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 406 VARTLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 406 vA~~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
....+++++..|+++++.+.||+++.....++..+..||++
T Consensus 210 ~~~~~~~~~~~~~~va~~~~~l~~~~~~~~~G~~~~vdgg~ 250 (253)
T PRK08642 210 AATTPLRKVTTPQEFADAVLFFASPWARAVTGQNLVVDGGL 250 (253)
T ss_pred HhcCCcCCCCCHHHHHHHHHHHcCchhcCccCCEEEeCCCe
Confidence 12345678899999999999999987767777777776664
|
|
| >PRK07814 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-32 Score=271.21 Aligned_cols=245 Identities=23% Similarity=0.338 Sum_probs=201.2
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
.++++|+++||||++|||++++++|+++|++|++++|+.+++++..+++.. .+.++.++.+|+
T Consensus 6 ~~~~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~-----------------~~~~~~~~~~D~ 68 (263)
T PRK07814 6 FRLDDQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRA-----------------AGRRAHVVAADL 68 (263)
T ss_pred ccCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-----------------cCCcEEEEEccC
Confidence 357899999999999999999999999999999999998887776666643 245688899999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
++++++.++++++.+.++++|+||||||... ..++.+.+.+++++++++|+.+++.+++++.|.|.+..+.++||++||
T Consensus 69 ~~~~~~~~~~~~~~~~~~~id~vi~~Ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~sS 147 (263)
T PRK07814 69 AHPEATAGLAGQAVEAFGRLDIVVNNVGGTM-PNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEHSGGGSVINISS 147 (263)
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCCCC-CCChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCCeEEEEEcc
Confidence 9999999999999999999999999999865 567888999999999999999999999999999987546789999999
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhcc
Q 010380 333 AGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVP 412 (512)
Q Consensus 333 ~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~ 412 (512)
. .+..+.++...|++||+++++++++++.|+.+ +|+||+|+||++.|++...... ...+. .+.....+..
T Consensus 148 ~-~~~~~~~~~~~Y~~sK~a~~~~~~~~~~e~~~-~i~v~~i~Pg~v~t~~~~~~~~--~~~~~------~~~~~~~~~~ 217 (263)
T PRK07814 148 T-MGRLAGRGFAAYGTAKAALAHYTRLAALDLCP-RIRVNAIAPGSILTSALEVVAA--NDELR------APMEKATPLR 217 (263)
T ss_pred c-cccCCCCCCchhHHHHHHHHHHHHHHHHHHCC-CceEEEEEeCCCcCchhhhccC--CHHHH------HHHHhcCCCC
Confidence 7 56677888999999999999999999999987 6999999999999997642111 01111 1111223456
Q ss_pred ccccchhhhhhhhhcCChHHHHHHHHHHhccCc
Q 010380 413 RIRVVKGSGKAINYLTPPRILLALVTAWLRRGR 445 (512)
Q Consensus 413 r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~ 445 (512)
++..++++++.+.|++++.....++..+..+++
T Consensus 218 ~~~~~~~va~~~~~l~~~~~~~~~g~~~~~~~~ 250 (263)
T PRK07814 218 RLGDPEDIAAAAVYLASPAGSYLTGKTLEVDGG 250 (263)
T ss_pred CCcCHHHHHHHHHHHcCccccCcCCCEEEECCC
Confidence 677899999999999987644444444444443
|
|
| >PRK06483 dihydromonapterin reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=268.40 Aligned_cols=230 Identities=16% Similarity=0.188 Sum_probs=186.2
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChh
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPA 256 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~ 256 (512)
+|+++||||++|||+++|++|+++|++|++++|+++.. .+++.+ . .+.++.+|++|++
T Consensus 2 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~---~~~~~~-----------------~--~~~~~~~D~~~~~ 59 (236)
T PRK06483 2 PAPILITGAGQRIGLALAWHLLAQGQPVIVSYRTHYPA---IDGLRQ-----------------A--GAQCIQADFSTNA 59 (236)
T ss_pred CceEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchhH---HHHHHH-----------------c--CCEEEEcCCCCHH
Confidence 57899999999999999999999999999999987643 223322 1 2567899999999
Q ss_pred hHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCC-CCCeEEeecCCCC
Q 010380 257 DVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQP-KGGHIFNMDGAGS 335 (512)
Q Consensus 257 sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~-~~g~IV~vSS~~a 335 (512)
+++++++++.+.++++|++|||||... .....+.+.++|++++++|+.+++.+++.++|.|.++. +.++||++||. .
T Consensus 60 ~~~~~~~~~~~~~~~id~lv~~ag~~~-~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~~~g~iv~~ss~-~ 137 (236)
T PRK06483 60 GIMAFIDELKQHTDGLRAIIHNASDWL-AEKPGAPLADVLARMMQIHVNAPYLLNLALEDLLRGHGHAASDIIHITDY-V 137 (236)
T ss_pred HHHHHHHHHHhhCCCccEEEECCcccc-CCCcCccCHHHHHHHHHHcchHHHHHHHHHHHHHHhCCCCCceEEEEcch-h
Confidence 999999999999999999999999865 34456788999999999999999999999999998762 25799999987 5
Q ss_pred CCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhccccc
Q 010380 336 GGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPRIR 415 (512)
Q Consensus 336 ~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~r~~ 415 (512)
+..+.++...|++||+|+++|+++++.|+++ +|+||+|+||++.|+... . ... ..+..++.++++..
T Consensus 138 ~~~~~~~~~~Y~asKaal~~l~~~~a~e~~~-~irvn~v~Pg~~~~~~~~---~---~~~------~~~~~~~~~~~~~~ 204 (236)
T PRK06483 138 VEKGSDKHIAYAASKAALDNMTLSFAAKLAP-EVKVNSIAPALILFNEGD---D---AAY------RQKALAKSLLKIEP 204 (236)
T ss_pred hccCCCCCccHHHHHHHHHHHHHHHHHHHCC-CcEEEEEccCceecCCCC---C---HHH------HHHHhccCccccCC
Confidence 6677788899999999999999999999987 599999999999886421 0 011 01223345678888
Q ss_pred cchhhhhhhhhcCChHHHHHHHHHHhccCc
Q 010380 416 VVKGSGKAINYLTPPRILLALVTAWLRRGR 445 (512)
Q Consensus 416 ~~~~va~~v~~L~s~~~~~~~~~~~~~~g~ 445 (512)
.|+|+++.+.||++. .+.++..+..||+
T Consensus 205 ~~~~va~~~~~l~~~--~~~~G~~i~vdgg 232 (236)
T PRK06483 205 GEEEIIDLVDYLLTS--CYVTGRSLPVDGG 232 (236)
T ss_pred CHHHHHHHHHHHhcC--CCcCCcEEEeCcc
Confidence 999999999999973 2344555544444
|
|
| >PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=278.54 Aligned_cols=241 Identities=24% Similarity=0.301 Sum_probs=195.9
Q ss_pred cCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcC-hhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEc
Q 010380 172 HCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRS-SESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIAC 250 (512)
Q Consensus 172 ~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~-~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~ 250 (512)
..++++|+++||||++|||+++|++|+++|++|++.+++ .+.+++..+++.+ .+.++.++.+
T Consensus 7 ~~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~-----------------~g~~~~~~~~ 69 (306)
T PRK07792 7 TTDLSGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRA-----------------AGAKAVAVAG 69 (306)
T ss_pred CcCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHh-----------------cCCeEEEEeC
Confidence 356889999999999999999999999999999999885 4456666666654 3567889999
Q ss_pred cCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCC------CC
Q 010380 251 DVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQP------KG 324 (512)
Q Consensus 251 Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~------~~ 324 (512)
|++|+++++++++.+.+ +|++|+||||||+.. ...+.+.+.++|++++++|+.++++++++++|+|+++. ..
T Consensus 70 Dv~d~~~~~~~~~~~~~-~g~iD~li~nAG~~~-~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~~~~~~~~~ 147 (306)
T PRK07792 70 DISQRATADELVATAVG-LGGLDIVVNNAGITR-DRMLFNMSDEEWDAVIAVHLRGHFLLTRNAAAYWRAKAKAAGGPVY 147 (306)
T ss_pred CCCCHHHHHHHHHHHHH-hCCCCEEEECCCCCC-CCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcccCCCCC
Confidence 99999999999999988 999999999999876 46788899999999999999999999999999997531 13
Q ss_pred CeEEeecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHH
Q 010380 325 GHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPE 404 (512)
Q Consensus 325 g~IV~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe 404 (512)
|+||++||. ++..+.++...|++||+|+++|+++++.|+.++||+||+|+|| +.|+|....... .++
T Consensus 148 g~iv~isS~-~~~~~~~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~i~Pg-~~t~~~~~~~~~-----------~~~ 214 (306)
T PRK07792 148 GRIVNTSSE-AGLVGPVGQANYGAAKAGITALTLSAARALGRYGVRANAICPR-ARTAMTADVFGD-----------APD 214 (306)
T ss_pred cEEEEECCc-ccccCCCCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEECCC-CCCchhhhhccc-----------cch
Confidence 799999987 5677778889999999999999999999999999999999999 488875321110 010
Q ss_pred HHHHHhccccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 405 TVARTLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 405 ~vA~~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
.... .. ....|++++..+.||+++.....++..+..+|+.
T Consensus 215 ~~~~-~~-~~~~pe~va~~v~~L~s~~~~~~tG~~~~v~gg~ 254 (306)
T PRK07792 215 VEAG-GI-DPLSPEHVVPLVQFLASPAAAEVNGQVFIVYGPM 254 (306)
T ss_pred hhhh-cc-CCCCHHHHHHHHHHHcCccccCCCCCEEEEcCCe
Confidence 0000 01 1236788999999999887656667666666654
|
|
| >PRK05855 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-32 Score=296.50 Aligned_cols=196 Identities=25% Similarity=0.363 Sum_probs=180.2
Q ss_pred cCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEcc
Q 010380 172 HCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACD 251 (512)
Q Consensus 172 ~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~D 251 (512)
...++++++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+ .+.++.++.||
T Consensus 310 ~~~~~~~~~lv~G~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~-----------------~~~~~~~~~~D 372 (582)
T PRK05855 310 RGPFSGKLVVVTGAGSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRA-----------------AGAVAHAYRVD 372 (582)
T ss_pred cccCCCCEEEEECCcCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-----------------cCCeEEEEEcC
Confidence 3457789999999999999999999999999999999999888887777754 34578899999
Q ss_pred CCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeec
Q 010380 252 VCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD 331 (512)
Q Consensus 252 ltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vS 331 (512)
++|+++++++++++.+.+|++|+||||||+.. .+++.+.+.+++++++++|+.|+++++++++|.|.+++.+|+||++|
T Consensus 373 v~~~~~~~~~~~~~~~~~g~id~lv~~Ag~~~-~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~~s 451 (582)
T PRK05855 373 VSDADAMEAFAEWVRAEHGVPDIVVNNAGIGM-AGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVERGTGGHIVNVA 451 (582)
T ss_pred CCCHHHHHHHHHHHHHhcCCCcEEEECCccCC-CCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 99999999999999999999999999999976 57888999999999999999999999999999999875568999999
Q ss_pred CCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccC
Q 010380 332 GAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLS 386 (512)
Q Consensus 332 S~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~ 386 (512)
|. ++..+.++...|++||+|+++|+++|+.|+.++||+|++|+||+|+|+|...
T Consensus 452 S~-~~~~~~~~~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~ 505 (582)
T PRK05855 452 SA-AAYAPSRSLPAYATSKAAVLMLSECLRAELAAAGIGVTAICPGFVDTNIVAT 505 (582)
T ss_pred Ch-hhccCCCCCcHHHHHHHHHHHHHHHHHHHhcccCcEEEEEEeCCCcccchhc
Confidence 98 6778889999999999999999999999999999999999999999998764
|
|
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-32 Score=270.68 Aligned_cols=245 Identities=22% Similarity=0.326 Sum_probs=199.8
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
+++++|+++||||++|||.++|++|+++|++|++++|+.+.+++..+++.+ .+.++.++.+|+
T Consensus 5 ~~~~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-----------------~~~~~~~~~~Dv 67 (264)
T PRK07576 5 FDFAGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQ-----------------AGPEGLGVSADV 67 (264)
T ss_pred ccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHH-----------------hCCceEEEECCC
Confidence 467899999999999999999999999999999999998877766656544 234678899999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|+++++++++++.+.++++|++|||||... ..++.+.+.+++++++++|+.|+++++++++|.|.++ +|+||++||
T Consensus 68 ~~~~~i~~~~~~~~~~~~~iD~vi~~ag~~~-~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~l~~~--~g~iv~iss 144 (264)
T PRK07576 68 RDYAAVEAAFAQIADEFGPIDVLVSGAAGNF-PAPAAGMSANGFKTVVDIDLLGTFNVLKAAYPLLRRP--GASIIQISA 144 (264)
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCCCC-CCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC--CCEEEEECC
Confidence 9999999999999999999999999999765 4677888999999999999999999999999999764 489999998
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCccc-CCcccCCcchhhhhhhhhhcCCHHHHHHHhc
Q 010380 333 AGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVL-TDLLLSGSTIQNKQMFNIICELPETVARTLV 411 (512)
Q Consensus 333 ~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~-T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l 411 (512)
. ++..+.++...|+++|+|++.|+++++.|+.++||+|++|+||+++ |+....... ..... .......++
T Consensus 145 ~-~~~~~~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~v~~v~pg~~~~t~~~~~~~~--~~~~~------~~~~~~~~~ 215 (264)
T PRK07576 145 P-QAFVPMPMQAHVCAAKAGVDMLTRTLALEWGPEGIRVNSIVPGPIAGTEGMARLAP--SPELQ------AAVAQSVPL 215 (264)
T ss_pred h-hhccCCCCccHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecccccCcHHHhhccc--CHHHH------HHHHhcCCC
Confidence 7 5667788899999999999999999999999999999999999997 553321110 00000 000111245
Q ss_pred cccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 412 PRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 412 ~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
++...|++++..+.||+++.....++..+..+|++
T Consensus 216 ~~~~~~~dva~~~~~l~~~~~~~~~G~~~~~~gg~ 250 (264)
T PRK07576 216 KRNGTKQDIANAALFLASDMASYITGVVLPVDGGW 250 (264)
T ss_pred CCCCCHHHHHHHHHHHcChhhcCccCCEEEECCCc
Confidence 66778999999999999876555556565666655
|
|
| >PRK08628 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=270.26 Aligned_cols=242 Identities=20% Similarity=0.236 Sum_probs=196.0
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
+++++|++|||||++|||+++|++|+++|++|++++|++++. +..+++.+ .+.++.++.+|+
T Consensus 3 ~~l~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~~-~~~~~~~~-----------------~~~~~~~~~~D~ 64 (258)
T PRK08628 3 LNLKDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDD-EFAEELRA-----------------LQPRAEFVQVDL 64 (258)
T ss_pred CCcCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhhH-HHHHHHHh-----------------cCCceEEEEccC
Confidence 578999999999999999999999999999999999998766 55555543 345788999999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+++++++++++++.+.++++|+||||||... ...+.+.+ ++|++.+++|+.+++.+++.++|.|.+. .++||++||
T Consensus 65 ~~~~~~~~~~~~~~~~~~~id~vi~~ag~~~-~~~~~~~~-~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~~~iv~~ss 140 (258)
T PRK08628 65 TDDAQCRDAVEQTVAKFGRIDGLVNNAGVND-GVGLEAGR-EAFVASLERNLIHYYVMAHYCLPHLKAS--RGAIVNISS 140 (258)
T ss_pred CCHHHHHHHHHHHHHhcCCCCEEEECCcccC-CCcccCCH-HHHHHHHhhhhHHHHHHHHHHHHHhhcc--CcEEEEECC
Confidence 9999999999999999999999999999765 34455444 9999999999999999999999998764 479999998
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHH-----HH
Q 010380 333 AGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPET-----VA 407 (512)
Q Consensus 333 ~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~-----vA 407 (512)
. .+..+.++...|++||+++++++++++.|+.++||+||+|+||.|+|++...... . . ..++. ..
T Consensus 141 ~-~~~~~~~~~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~v~pg~v~t~~~~~~~~-------~-~-~~~~~~~~~~~~ 210 (258)
T PRK08628 141 K-TALTGQGGTSGYAAAKGAQLALTREWAVALAKDGVRVNAVIPAEVMTPLYENWIA-------T-F-DDPEAKLAAITA 210 (258)
T ss_pred H-HhccCCCCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCccCCHHHHHHhh-------h-c-cCHHHHHHHHHh
Confidence 7 5667778889999999999999999999999999999999999999997532100 0 0 01111 11
Q ss_pred HHhc-cccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 408 RTLV-PRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 408 ~~~l-~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
..++ .++..|++++..+.|++++.....++..+..+|++
T Consensus 211 ~~~~~~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~gg~ 250 (258)
T PRK08628 211 KIPLGHRMTTAEEIADTAVFLLSERSSHTTGQWLFVDGGY 250 (258)
T ss_pred cCCccccCCCHHHHHHHHHHHhChhhccccCceEEecCCc
Confidence 1233 26788999999999999987655555555555544
|
|
| >KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=264.44 Aligned_cols=188 Identities=31% Similarity=0.454 Sum_probs=168.2
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
++++||++++||+.+|||++++++|+++|..+.++..+.|.. +...+|++.. +..++.+++||+
T Consensus 1 m~~tGKna~vtggagGIGl~~sk~Ll~kgik~~~i~~~~En~-~a~akL~ai~---------------p~~~v~F~~~DV 64 (261)
T KOG4169|consen 1 MDLTGKNALVTGGAGGIGLATSKALLEKGIKVLVIDDSEENP-EAIAKLQAIN---------------PSVSVIFIKCDV 64 (261)
T ss_pred CcccCceEEEecCCchhhHHHHHHHHHcCchheeehhhhhCH-HHHHHHhccC---------------CCceEEEEEecc
Confidence 467899999999999999999999999999888777776664 4455565533 457899999999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCC--CCCeEEee
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQP--KGGHIFNM 330 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~--~~g~IV~v 330 (512)
++..++++.++++.+.+|.||++||+||+.. +.+|++++++|+.|.++-+...+|+|.++. .+|.|||+
T Consensus 65 t~~~~~~~~f~ki~~~fg~iDIlINgAGi~~---------dkd~e~Ti~vNLtgvin~T~~alpyMdk~~gG~GGiIvNm 135 (261)
T KOG4169|consen 65 TNRGDLEAAFDKILATFGTIDILINGAGILD---------DKDWERTINVNLTGVINGTQLALPYMDKKQGGKGGIIVNM 135 (261)
T ss_pred ccHHHHHHHHHHHHHHhCceEEEEccccccc---------chhHHHhhccchhhhhhhhhhhhhhhhhhcCCCCcEEEEe
Confidence 9999999999999999999999999999964 467999999999999999999999998875 67899999
Q ss_pred cCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHH--hCCCCeEEEEEeCCcccCCcccC
Q 010380 331 DGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKE--SKRSKVGVHTASPGMVLTDLLLS 386 (512)
Q Consensus 331 SS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~E--l~~~GIrVn~V~PG~V~T~~~~~ 386 (512)
||. .+..|.|-.+.|++||+++.+|+|+|+.. +.+.||++++||||+++|++...
T Consensus 136 sSv-~GL~P~p~~pVY~AsKaGVvgFTRSla~~ayy~~sGV~~~avCPG~t~t~l~~~ 192 (261)
T KOG4169|consen 136 SSV-AGLDPMPVFPVYAASKAGVVGFTRSLADLAYYQRSGVRFNAVCPGFTRTDLAEN 192 (261)
T ss_pred ccc-cccCccccchhhhhcccceeeeehhhhhhhhHhhcCEEEEEECCCcchHHHHHH
Confidence 998 79999999999999999999999999877 45789999999999999998754
|
|
| >PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=265.56 Aligned_cols=247 Identities=22% Similarity=0.268 Sum_probs=198.4
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChh
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPA 256 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~ 256 (512)
+|++|||||++|||.++|++|+++|++|++++|+.+.+++..+++.... ...++.++.||++|++
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~---------------~~~~~~~~~~D~~~~~ 66 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEY---------------GEGMAYGFGADATSEQ 66 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhc---------------CCceeEEEEccCCCHH
Confidence 6899999999999999999999999999999999887777666654421 1146889999999999
Q ss_pred hHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCC
Q 010380 257 DVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSG 336 (512)
Q Consensus 257 sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~ 336 (512)
++.++++++.+.++++|++|||||... ..++.+.+.++|++.+++|+.++++++++++|.|.+++..++||++||. ++
T Consensus 67 ~i~~~~~~~~~~~~~id~vv~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~~iv~~ss~-~~ 144 (259)
T PRK12384 67 SVLALSRGVDEIFGRVDLLVYNAGIAK-AAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSK-SG 144 (259)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCcCC-CCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCcEEEEecCc-cc
Confidence 999999999999999999999999876 5778889999999999999999999999999999876335899999887 45
Q ss_pred CCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcc-cCCcccCCcchhhhhhhhhhcCCHHHH-----HHHh
Q 010380 337 GSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMV-LTDLLLSGSTIQNKQMFNIICELPETV-----ARTL 410 (512)
Q Consensus 337 ~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V-~T~~~~~~~~~~~~~~~~~~~~~pe~v-----A~~~ 410 (512)
..+.+....|++||+|+++++++++.|++++||+||+|+||.+ .|++.....+. ........+++. ...+
T Consensus 145 ~~~~~~~~~Y~~sKaa~~~l~~~la~e~~~~gi~v~~v~pg~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 220 (259)
T PRK12384 145 KVGSKHNSGYSAAKFGGVGLTQSLALDLAEYGITVHSLMLGNLLKSPMFQSLLPQ----YAKKLGIKPDEVEQYYIDKVP 220 (259)
T ss_pred ccCCCCCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCCcccchhhhhhhHH----HHHhcCCChHHHHHHHHHhCc
Confidence 5667788899999999999999999999999999999999975 67765321111 000011122222 2345
Q ss_pred ccccccchhhhhhhhhcCChHHHHHHHHHHhccC
Q 010380 411 VPRIRVVKGSGKAINYLTPPRILLALVTAWLRRG 444 (512)
Q Consensus 411 l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g 444 (512)
+++...++|++.++.||++......++..+..+|
T Consensus 221 ~~~~~~~~dv~~~~~~l~~~~~~~~~G~~~~v~~ 254 (259)
T PRK12384 221 LKRGCDYQDVLNMLLFYASPKASYCTGQSINVTG 254 (259)
T ss_pred ccCCCCHHHHHHHHHHHcCcccccccCceEEEcC
Confidence 6788899999999999998654444444444443
|
|
| >TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-32 Score=265.18 Aligned_cols=234 Identities=21% Similarity=0.302 Sum_probs=193.1
Q ss_pred EEEECCCChHHHHHHHHHHHCCCEEEEEEcC-hhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhhH
Q 010380 180 VVITGSTRGLGKALAREFLLSGDRVVVASRS-SESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPADV 258 (512)
Q Consensus 180 vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~-~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~sv 258 (512)
++||||++|||+++|++|+++|++|++++|+ .+.+++..+++.+ .+.++.++.+|++|++++
T Consensus 1 vlItGas~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~-----------------~~~~~~~~~~Dl~~~~~~ 63 (239)
T TIGR01831 1 VLVTGASRGIGRAIANRLAADGFEICVHYHSGRSDAESVVSAIQA-----------------QGGNARLLQFDVADRVAC 63 (239)
T ss_pred CEEeCCCchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHH-----------------cCCeEEEEEccCCCHHHH
Confidence 5899999999999999999999999998875 4555555555544 345789999999999999
Q ss_pred HHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHH-HHHHhCCCCCeEEeecCCCCCC
Q 010380 259 QKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAM-RVMRDQPKGGHIFNMDGAGSGG 337 (512)
Q Consensus 259 ~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~l-p~m~~~~~~g~IV~vSS~~a~~ 337 (512)
.++++++.+.++++|++|||||+.. ..++.+.+.++|+.++++|+.+++++++.++ |.++++ +.++||++||. ++.
T Consensus 64 ~~~~~~~~~~~~~i~~li~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~~iv~vsS~-~~~ 140 (239)
T TIGR01831 64 RTLLEADIAEHGAYYGVVLNAGITR-DAAFPALSEEDWDIVIHTNLDGFYNVIHPCTMPMIRAR-QGGRIITLASV-SGV 140 (239)
T ss_pred HHHHHHHHHHcCCCCEEEECCCCCC-CCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhc-CCeEEEEEcch-hhc
Confidence 9999999999999999999999876 4667788999999999999999999999876 444444 56899999987 567
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhccccccc
Q 010380 338 SSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPRIRVV 417 (512)
Q Consensus 338 ~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~r~~~~ 417 (512)
.+.++...|+++|+++++++++++.|+.++||+|++|+||+++|++...... . ..+..+..+++++..|
T Consensus 141 ~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~----~-------~~~~~~~~~~~~~~~~ 209 (239)
T TIGR01831 141 MGNRGQVNYSAAKAGLIGATKALAVELAKRKITVNCIAPGLIDTEMLAEVEH----D-------LDEALKTVPMNRMGQP 209 (239)
T ss_pred cCCCCCcchHHHHHHHHHHHHHHHHHHhHhCeEEEEEEEccCccccchhhhH----H-------HHHHHhcCCCCCCCCH
Confidence 7888899999999999999999999999999999999999999998643211 0 0122334567889999
Q ss_pred hhhhhhhhhcCChHHHHHHHHHHhccC
Q 010380 418 KGSGKAINYLTPPRILLALVTAWLRRG 444 (512)
Q Consensus 418 ~~va~~v~~L~s~~~~~~~~~~~~~~g 444 (512)
+++++.+.||+++...+.++.....+|
T Consensus 210 ~~va~~~~~l~~~~~~~~~g~~~~~~g 236 (239)
T TIGR01831 210 AEVASLAGFLMSDGASYVTRQVISVNG 236 (239)
T ss_pred HHHHHHHHHHcCchhcCccCCEEEecC
Confidence 999999999999876555554444444
|
This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found. |
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-32 Score=296.06 Aligned_cols=243 Identities=29% Similarity=0.408 Sum_probs=197.5
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
+.++|+++||||++|||+++|++|+++|++|++++|+.+++++..+++ +.++.++.+|++
T Consensus 2 ~~~~k~~lITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~--------------------~~~~~~~~~D~~ 61 (520)
T PRK06484 2 KAQSRVVLVTGAAGGIGRAACQRFARAGDQVVVADRNVERARERADSL--------------------GPDHHALAMDVS 61 (520)
T ss_pred CCCCeEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--------------------CCceeEEEeccC
Confidence 457899999999999999999999999999999999988776554443 245778999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCC-CCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKG-FKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~-~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
|+++++++++++.++++++|+||||||+..+ ..++.+.+.++|++++++|+.+++.++++++|+|++++.+++||++||
T Consensus 62 ~~~~~~~~~~~~~~~~g~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~~iv~isS 141 (520)
T PRK06484 62 DEAQIREGFEQLHREFGRIDVLVNNAGVTDPTMTATLDTTLEEFARLQAINLTGAYLVAREALRLMIEQGHGAAIVNVAS 141 (520)
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCCcCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCeEEEECC
Confidence 9999999999999999999999999998431 356788999999999999999999999999999987644459999999
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHH-HHHhc
Q 010380 333 AGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETV-ARTLV 411 (512)
Q Consensus 333 ~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~v-A~~~l 411 (512)
. .+..+.++...|+++|+|+.+|+++|+.|+.+.||+|++|+||+|+|++......... ..++.. ...+.
T Consensus 142 ~-~~~~~~~~~~~Y~asKaal~~l~~~la~e~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~--------~~~~~~~~~~~~ 212 (520)
T PRK06484 142 G-AGLVALPKRTAYSASKAAVISLTRSLACEWAAKGIRVNAVLPGYVRTQMVAELERAGK--------LDPSAVRSRIPL 212 (520)
T ss_pred c-ccCCCCCCCchHHHHHHHHHHHHHHHHHHhhhhCeEEEEEccCCcCchhhhhhcccch--------hhhHHHHhcCCC
Confidence 7 6778888999999999999999999999999999999999999999998643211000 011111 22345
Q ss_pred cccccchhhhhhhhhcCChHHHHHHHHHHhccCc
Q 010380 412 PRIRVVKGSGKAINYLTPPRILLALVTAWLRRGR 445 (512)
Q Consensus 412 ~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~ 445 (512)
.++..|++++..+.||+++...+.++..+..+|+
T Consensus 213 ~~~~~~~~va~~v~~l~~~~~~~~~G~~~~~~gg 246 (520)
T PRK06484 213 GRLGRPEEIAEAVFFLASDQASYITGSTLVVDGG 246 (520)
T ss_pred CCCcCHHHHHHHHHHHhCccccCccCceEEecCC
Confidence 5677888888888888876544444444444443
|
|
| >PRK06197 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-32 Score=276.60 Aligned_cols=198 Identities=22% Similarity=0.235 Sum_probs=167.9
Q ss_pred cccCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEE
Q 010380 170 EEHCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIA 249 (512)
Q Consensus 170 ~~~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~ 249 (512)
.+..++++|+++||||++|||+++|++|+++|++|++++|+.++.++..+++.+.. .+.++.++.
T Consensus 9 ~~~~~~~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~---------------~~~~~~~~~ 73 (306)
T PRK06197 9 ADIPDQSGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAAT---------------PGADVTLQE 73 (306)
T ss_pred cccccCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC---------------CCCceEEEE
Confidence 34467899999999999999999999999999999999999888877776665421 134688899
Q ss_pred ccCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEe
Q 010380 250 CDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFN 329 (512)
Q Consensus 250 ~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~ 329 (512)
+|++|.++++++++++.+.++++|+||||||+..+ ..+.+.++++..+++|+.|++.+++.++|.|++. +.++||+
T Consensus 74 ~Dl~d~~~v~~~~~~~~~~~~~iD~li~nAg~~~~---~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~-~~~~iV~ 149 (306)
T PRK06197 74 LDLTSLASVRAAADALRAAYPRIDLLINNAGVMYT---PKQTTADGFELQFGTNHLGHFALTGLLLDRLLPV-PGSRVVT 149 (306)
T ss_pred CCCCCHHHHHHHHHHHHhhCCCCCEEEECCccccC---CCccCCCCcchhhhhhhHHHHHHHHHHHHHHhhC-CCCEEEE
Confidence 99999999999999999999999999999998642 2456778999999999999999999999999876 4689999
Q ss_pred ecCCCCCC------------CCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEE--eCCcccCCcccC
Q 010380 330 MDGAGSGG------------SSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTA--SPGMVLTDLLLS 386 (512)
Q Consensus 330 vSS~~a~~------------~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V--~PG~V~T~~~~~ 386 (512)
+||.++.. .+.++...|++||+|++.|++.+++|+++.||+|+++ +||+|+|+|...
T Consensus 150 vSS~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~l~~~~i~v~~v~~~PG~v~T~~~~~ 220 (306)
T PRK06197 150 VSSGGHRIRAAIHFDDLQWERRYNRVAAYGQSKLANLLFTYELQRRLAAAGATTIAVAAHPGVSNTELARN 220 (306)
T ss_pred ECCHHHhccCCCCccccCcccCCCcHHHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEeCCCcccCccccc
Confidence 99873221 1234567899999999999999999998888777665 699999998754
|
|
| >PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-32 Score=268.10 Aligned_cols=240 Identities=18% Similarity=0.264 Sum_probs=193.6
Q ss_pred CCCCCCEEEEECCCC--hHHHHHHHHHHHCCCEEEEEEcCh-----------hhHHHHHHHHHHHHhhhhhhcCCCCccc
Q 010380 173 CKAGPRNVVITGSTR--GLGKALAREFLLSGDRVVVASRSS-----------ESVRMTVTELEENLKEGMMAAGGSSKKN 239 (512)
Q Consensus 173 ~~l~gk~vLVTGass--GIG~aiA~~La~~Ga~Vvl~~R~~-----------~~l~~~~~el~~~~~~~~~~~g~~~~~~ 239 (512)
+++++|+++||||++ |||.++|++|+++|++|++++|++ .......+++..
T Consensus 1 ~~l~~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 64 (256)
T PRK12748 1 LPLMKKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVLLKEEIES---------------- 64 (256)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHHHHHHHHh----------------
Confidence 357889999999994 999999999999999999999972 111112222221
Q ss_pred ccCceEEEEEccCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 010380 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMR 319 (512)
Q Consensus 240 ~~g~~v~~v~~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~ 319 (512)
.+.+++++.+|++|+++++.+++++.+.++++|+||||||+.. ..++.+.+.+++++.+++|+.++++++++++|.|.
T Consensus 65 -~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~vi~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~ 142 (256)
T PRK12748 65 -YGVRCEHMEIDLSQPYAPNRVFYAVSERLGDPSILINNAAYST-HTRLEELTAEQLDKHYAVNVRATMLLSSAFAKQYD 142 (256)
T ss_pred -cCCeEEEEECCCCCHHHHHHHHHHHHHhCCCCCEEEECCCcCC-CCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 3457899999999999999999999999999999999999876 57788899999999999999999999999999997
Q ss_pred hCCCCCeEEeecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhh
Q 010380 320 DQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNII 399 (512)
Q Consensus 320 ~~~~~g~IV~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~ 399 (512)
++ ..++||++||. .+..+.++...|++||+|+++++++++.|+.+.||+|++|+||+++|++..... ...
T Consensus 143 ~~-~~~~iv~~ss~-~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~Pg~~~t~~~~~~~---~~~----- 212 (256)
T PRK12748 143 GK-AGGRIINLTSG-QSLGPMPDELAYAATKGAIEAFTKSLAPELAEKGITVNAVNPGPTDTGWITEEL---KHH----- 212 (256)
T ss_pred hc-CCeEEEEECCc-cccCCCCCchHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEEeCcccCCCCChhH---HHh-----
Confidence 65 56899999987 566777888999999999999999999999999999999999999999753210 000
Q ss_pred cCCHHHHHHHhccccccchhhhhhhhhcCChHHHHHHHHHHhccCc
Q 010380 400 CELPETVARTLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGR 445 (512)
Q Consensus 400 ~~~pe~vA~~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~ 445 (512)
.....+..++..|++++..+.||+++.....++..+..||+
T Consensus 213 -----~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~g~~~~~d~g 253 (256)
T PRK12748 213 -----LVPKFPQGRVGEPVDAARLIAFLVSEEAKWITGQVIHSEGG 253 (256)
T ss_pred -----hhccCCCCCCcCHHHHHHHHHHHhCcccccccCCEEEecCC
Confidence 01112334667789999999999988765544544444443
|
|
| >PRK07453 protochlorophyllide oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-31 Score=273.49 Aligned_cols=196 Identities=17% Similarity=0.166 Sum_probs=164.2
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
++.+|+++||||++|||+++|++|+++|++|++++|+.++++++.+++.. .+.++.++.+|++
T Consensus 3 ~~~~k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~-----------------~~~~~~~~~~Dl~ 65 (322)
T PRK07453 3 QDAKGTVIITGASSGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELGI-----------------PPDSYTIIHIDLG 65 (322)
T ss_pred CCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhc-----------------cCCceEEEEecCC
Confidence 45789999999999999999999999999999999998888777666532 2346888999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCC-CCeEEeecC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPK-GGHIFNMDG 332 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~-~g~IV~vSS 332 (512)
|.++++++++++.+.++++|+||||||+..+..+..+.+.++++.++++|+.|+++++++++|.|++++. .++||++||
T Consensus 66 ~~~~v~~~~~~~~~~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~riV~vsS 145 (322)
T PRK07453 66 DLDSVRRFVDDFRALGKPLDALVCNAAVYMPLLKEPLRSPQGYELSMATNHLGHFLLCNLLLEDLKKSPAPDPRLVILGT 145 (322)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEECCcccCCCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCceEEEEcc
Confidence 9999999999988877899999999998653233456789999999999999999999999999987643 369999998
Q ss_pred CCCCC----------------------------------CCCCCcchhhHHHHHHHHHHHHHHHHhC-CCCeEEEEEeCC
Q 010380 333 AGSGG----------------------------------SSTPLTAVYGSTKCGLRQLQASLFKESK-RSKVGVHTASPG 377 (512)
Q Consensus 333 ~~a~~----------------------------------~~~p~~~~Y~aSKaAl~~l~~sLa~El~-~~GIrVn~V~PG 377 (512)
..+.. .+..+...|+.||.+...+++.|++++. ..||+|++|+||
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG 225 (322)
T PRK07453 146 VTANPKELGGKIPIPAPADLGDLSGFEAGFKAPISMADGKKFKPGKAYKDSKLCNMLTMRELHRRYHESTGITFSSLYPG 225 (322)
T ss_pred cccCccccCCccCCCCccchhhhhcchhcccccccccCccCCCccchhhHhHHHHHHHHHHHHHhhcccCCeEEEEecCC
Confidence 63211 0112346899999999999999999995 469999999999
Q ss_pred cc-cCCcccC
Q 010380 378 MV-LTDLLLS 386 (512)
Q Consensus 378 ~V-~T~~~~~ 386 (512)
+| .|++..+
T Consensus 226 ~v~~t~~~~~ 235 (322)
T PRK07453 226 CVADTPLFRN 235 (322)
T ss_pred cccCCccccc
Confidence 99 5988644
|
|
| >PRK08063 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-32 Score=265.33 Aligned_cols=230 Identities=23% Similarity=0.368 Sum_probs=190.6
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEE-EEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 175 AGPRNVVITGSTRGLGKALAREFLLSGDRVVV-ASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 175 l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl-~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
+.+|+++||||++|||+++|++|+++|++|++ .+|+.++.+++.++++. .+.++.++.+|++
T Consensus 2 ~~~~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~-----------------~~~~~~~~~~D~~ 64 (250)
T PRK08063 2 FSGKVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEA-----------------LGRKALAVKANVG 64 (250)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHh-----------------cCCeEEEEEcCCC
Confidence 46799999999999999999999999999876 57888777777666654 3467889999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
|++++.++++++.+.++++|+||||||... ..++.+.+.+++++.+++|+.+++.++++++|.|.++ +.|+||++||.
T Consensus 65 ~~~~~~~~~~~~~~~~~~id~vi~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~g~iv~~sS~ 142 (250)
T PRK08063 65 DVEKIKEMFAQIDEEFGRLDVFVNNAASGV-LRPAMELEESHWDWTMNINAKALLFCAQEAAKLMEKV-GGGKIISLSSL 142 (250)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCC-CCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCeEEEEEcch
Confidence 999999999999999999999999999876 5788899999999999999999999999999999876 56899999987
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhccc
Q 010380 334 GSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPR 413 (512)
Q Consensus 334 ~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~r 413 (512)
....+.++...|++||++++.|+++++.|+.+.||++|+|+||++.|++....... ..... ......+.++
T Consensus 143 -~~~~~~~~~~~y~~sK~a~~~~~~~~~~~~~~~~i~v~~i~pg~v~t~~~~~~~~~--~~~~~------~~~~~~~~~~ 213 (250)
T PRK08063 143 -GSIRYLENYTTVGVSKAALEALTRYLAVELAPKGIAVNAVSGGAVDTDALKHFPNR--EELLE------DARAKTPAGR 213 (250)
T ss_pred -hhccCCCCccHHHHHHHHHHHHHHHHHHHHhHhCeEEEeEecCcccCchhhhccCc--hHHHH------HHhcCCCCCC
Confidence 45667778899999999999999999999999999999999999999986432111 01100 0001122345
Q ss_pred cccchhhhhhhhhcCChHH
Q 010380 414 IRVVKGSGKAINYLTPPRI 432 (512)
Q Consensus 414 ~~~~~~va~~v~~L~s~~~ 432 (512)
...++|+++.+.+++.+..
T Consensus 214 ~~~~~dva~~~~~~~~~~~ 232 (250)
T PRK08063 214 MVEPEDVANAVLFLCSPEA 232 (250)
T ss_pred CcCHHHHHHHHHHHcCchh
Confidence 6778888888888887654
|
|
| >KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-32 Score=266.28 Aligned_cols=192 Identities=24% Similarity=0.359 Sum_probs=175.6
Q ss_pred cCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEcc
Q 010380 172 HCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACD 251 (512)
Q Consensus 172 ~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~D 251 (512)
.....+|.|+|||+.+|+|+.+|++|.++|++|++.+-+++..+.+..+.. ..+...+..|
T Consensus 24 ~~~~~~k~VlITGCDSGfG~~LA~~L~~~Gf~V~Agcl~~~gae~L~~~~~-------------------s~rl~t~~LD 84 (322)
T KOG1610|consen 24 LDSLSDKAVLITGCDSGFGRLLAKKLDKKGFRVFAGCLTEEGAESLRGETK-------------------SPRLRTLQLD 84 (322)
T ss_pred ccccCCcEEEEecCCcHHHHHHHHHHHhcCCEEEEEeecCchHHHHhhhhc-------------------CCcceeEeec
Confidence 446789999999999999999999999999999999988887776655542 3678888999
Q ss_pred CCChhhHHHHHHHHHHHcC--CCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEe
Q 010380 252 VCEPADVQKLSNFAVNEFG--SIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFN 329 (512)
Q Consensus 252 ltd~~sv~~~~~~i~~~~g--~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~ 329 (512)
+|++++|+++.+.+.+..+ .+..||||||+....++.+-.+.+++++++++|++|++.++++++|+++++ .|||||
T Consensus 85 VT~~esi~~a~~~V~~~l~~~gLwglVNNAGi~~~~g~~ewl~~~d~~~~l~vNllG~irvT~~~lpLlr~a--rGRvVn 162 (322)
T KOG1610|consen 85 VTKPESVKEAAQWVKKHLGEDGLWGLVNNAGISGFLGPDEWLTVEDYRKVLNVNLLGTIRVTKAFLPLLRRA--RGRVVN 162 (322)
T ss_pred cCCHHHHHHHHHHHHHhcccccceeEEeccccccccCccccccHHHHHHHHhhhhhhHHHHHHHHHHHHHhc--cCeEEE
Confidence 9999999999998887653 599999999987768889999999999999999999999999999999986 799999
Q ss_pred ecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCccc
Q 010380 330 MDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLL 385 (512)
Q Consensus 330 vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~ 385 (512)
+||. .+..+.|..+.|++||+|++.|+.+|++|+.+.||+|.+|.||..+|++..
T Consensus 163 vsS~-~GR~~~p~~g~Y~~SK~aVeaf~D~lR~EL~~fGV~VsiiePG~f~T~l~~ 217 (322)
T KOG1610|consen 163 VSSV-LGRVALPALGPYCVSKFAVEAFSDSLRRELRPFGVKVSIIEPGFFKTNLAN 217 (322)
T ss_pred eccc-ccCccCcccccchhhHHHHHHHHHHHHHHHHhcCcEEEEeccCccccccCC
Confidence 9998 789999999999999999999999999999999999999999999999985
|
|
| >PRK12744 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-32 Score=267.34 Aligned_cols=242 Identities=22% Similarity=0.302 Sum_probs=185.4
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcCh----hhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEE
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSS----ESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIA 249 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~----~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~ 249 (512)
++++|+++||||++|||+++|+.|+++|++|++++++. +.+++..+++.. .+.++.+++
T Consensus 5 ~l~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~-----------------~~~~~~~~~ 67 (257)
T PRK12744 5 SLKGKVVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKA-----------------AGAKAVAFQ 67 (257)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHH-----------------hCCcEEEEe
Confidence 46789999999999999999999999999977776543 333333333332 235788899
Q ss_pred ccCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEe
Q 010380 250 CDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFN 329 (512)
Q Consensus 250 ~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~ 329 (512)
+|++|+++++++++++.+.++++|++|||||... ..++.+.+.+++++++++|+.+++.++++++|.|.+. ++|++
T Consensus 68 ~D~~~~~~~~~~~~~~~~~~~~id~li~~ag~~~-~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~---~~iv~ 143 (257)
T PRK12744 68 ADLTTAAAVEKLFDDAKAAFGRPDIAINTVGKVL-KKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDN---GKIVT 143 (257)
T ss_pred cCcCCHHHHHHHHHHHHHhhCCCCEEEECCcccC-CCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccC---CCEEE
Confidence 9999999999999999999999999999999876 4678889999999999999999999999999999743 56776
Q ss_pred e-cCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHH
Q 010380 330 M-DGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVAR 408 (512)
Q Consensus 330 v-SS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~ 408 (512)
+ ||. ...+.++...|++||+|+++|+++++.|+.+.||+||+|+||++.|++........ ..... ... ...
T Consensus 144 ~~ss~--~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~pg~v~t~~~~~~~~~~---~~~~~-~~~--~~~ 215 (257)
T PRK12744 144 LVTSL--LGAFTPFYSAYAGSKAPVEHFTRAASKEFGARGISVTAVGPGPMDTPFFYPQEGAE---AVAYH-KTA--AAL 215 (257)
T ss_pred Eecch--hcccCCCcccchhhHHHHHHHHHHHHHHhCcCceEEEEEecCccccchhccccccc---hhhcc-ccc--ccc
Confidence 6 443 22345778899999999999999999999999999999999999999864321111 00000 000 011
Q ss_pred Hhc--cccccchhhhhhhhhcCChHHHHHHHHHHhccCc
Q 010380 409 TLV--PRIRVVKGSGKAINYLTPPRILLALVTAWLRRGR 445 (512)
Q Consensus 409 ~~l--~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~ 445 (512)
.++ .++..|+|++..+.||+++ ..+.++..+..+|+
T Consensus 216 ~~~~~~~~~~~~dva~~~~~l~~~-~~~~~g~~~~~~gg 253 (257)
T PRK12744 216 SPFSKTGLTDIEDIVPFIRFLVTD-GWWITGQTILINGG 253 (257)
T ss_pred cccccCCCCCHHHHHHHHHHhhcc-cceeecceEeecCC
Confidence 122 2678899999999999985 33334445555544
|
|
| >PRK06180 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-31 Score=265.97 Aligned_cols=187 Identities=27% Similarity=0.342 Sum_probs=168.2
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCCh
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEP 255 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~ 255 (512)
.+|+++||||+||||++++++|+++|++|++++|++++++.+.+. .+.++.++.+|++|+
T Consensus 3 ~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~~--------------------~~~~~~~~~~D~~d~ 62 (277)
T PRK06180 3 SMKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEAL--------------------HPDRALARLLDVTDF 62 (277)
T ss_pred CCCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHhh--------------------cCCCeeEEEccCCCH
Confidence 578999999999999999999999999999999998765443221 234678899999999
Q ss_pred hhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCC
Q 010380 256 ADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGS 335 (512)
Q Consensus 256 ~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a 335 (512)
+++.++++.+.+.++++|+||||||... ..++.+.+.+++++++++|+.|+++++++++|+|+++ +.++||++||. +
T Consensus 63 ~~~~~~~~~~~~~~~~~d~vv~~ag~~~-~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~-~~~~iv~iSS~-~ 139 (277)
T PRK06180 63 DAIDAVVADAEATFGPIDVLVNNAGYGH-EGAIEESPLAEMRRQFEVNVFGAVAMTKAVLPGMRAR-RRGHIVNITSM-G 139 (277)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCCccC-CcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcc-CCCEEEEEecc-c
Confidence 9999999999999999999999999876 5788899999999999999999999999999999876 46799999997 5
Q ss_pred CCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCccc
Q 010380 336 GGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLL 385 (512)
Q Consensus 336 ~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~ 385 (512)
+..+.|+...|+++|+++++++++++.|+.+.||+|++|+||+|.|++..
T Consensus 140 ~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~Pg~v~t~~~~ 189 (277)
T PRK06180 140 GLITMPGIGYYCGSKFALEGISESLAKEVAPFGIHVTAVEPGSFRTDWAG 189 (277)
T ss_pred ccCCCCCcchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEecCCcccCccc
Confidence 66778899999999999999999999999999999999999999999754
|
|
| >PRK12937 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-31 Score=260.92 Aligned_cols=234 Identities=26% Similarity=0.409 Sum_probs=192.1
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChh-hHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEcc
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSE-SVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACD 251 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~-~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~D 251 (512)
+++++|+++||||++|||+++|++|+++|++|+++.|+.+ ..++..+++.. .+.++.++.+|
T Consensus 1 ~~~~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~D 63 (245)
T PRK12937 1 MTLSNKVAIVTGASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEA-----------------AGGRAIAVQAD 63 (245)
T ss_pred CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHh-----------------cCCeEEEEECC
Confidence 4578899999999999999999999999999998877643 34444455433 34678999999
Q ss_pred CCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeec
Q 010380 252 VCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD 331 (512)
Q Consensus 252 ltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vS 331 (512)
++|+++++++++++.+.++++|++|||||... ..++.+.+.+++++++++|+.+++.++++++|.|.+ .++||++|
T Consensus 64 l~~~~~~~~~~~~~~~~~~~id~vi~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~---~~~iv~~s 139 (245)
T PRK12937 64 VADAAAVTRLFDAAETAFGRIDVLVNNAGVMP-LGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQ---GGRIINLS 139 (245)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCCCCC-CCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhcc---CcEEEEEe
Confidence 99999999999999999999999999999875 567788899999999999999999999999999864 47999998
Q ss_pred CCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhc
Q 010380 332 GAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLV 411 (512)
Q Consensus 332 S~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l 411 (512)
|. +...+.|+...|+++|++++.++++++.|+.+.||+|++|+||+++|+|....... . .. .......++
T Consensus 140 s~-~~~~~~~~~~~Y~~sK~a~~~~~~~~a~~~~~~~i~v~~i~pg~~~t~~~~~~~~~--~-~~------~~~~~~~~~ 209 (245)
T PRK12937 140 TS-VIALPLPGYGPYAASKAAVEGLVHVLANELRGRGITVNAVAPGPVATELFFNGKSA--E-QI------DQLAGLAPL 209 (245)
T ss_pred ec-cccCCCCCCchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCccCchhcccCCH--H-HH------HHHHhcCCC
Confidence 87 56677888999999999999999999999999999999999999999986332110 0 00 111122345
Q ss_pred cccccchhhhhhhhhcCChHHHHHHH
Q 010380 412 PRIRVVKGSGKAINYLTPPRILLALV 437 (512)
Q Consensus 412 ~r~~~~~~va~~v~~L~s~~~~~~~~ 437 (512)
.+...|+++++.+.||+++...+..+
T Consensus 210 ~~~~~~~d~a~~~~~l~~~~~~~~~g 235 (245)
T PRK12937 210 ERLGTPEEIAAAVAFLAGPDGAWVNG 235 (245)
T ss_pred CCCCCHHHHHHHHHHHcCccccCccc
Confidence 67778899999999999865433333
|
|
| >PRK06500 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=263.60 Aligned_cols=243 Identities=23% Similarity=0.327 Sum_probs=194.8
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
++.+|+++||||++|||.+++++|+++|++|++++|+.+.+++..+++ +.++.++++|++
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~--------------------~~~~~~~~~D~~ 62 (249)
T PRK06500 3 RLQGKTALITGGTSGIGLETARQFLAEGARVAITGRDPASLEAARAEL--------------------GESALVIRADAG 62 (249)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHh--------------------CCceEEEEecCC
Confidence 467899999999999999999999999999999999977665443332 346788999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
|.+++..+++.+.+.++++|++|||||... ..++.+.+.+++++++++|+.+++.++++++|+|.+ .+++|+++|.
T Consensus 63 ~~~~~~~~~~~~~~~~~~id~vi~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~---~~~~i~~~S~ 138 (249)
T PRK06500 63 DVAAQKALAQALAEAFGRLDAVFINAGVAK-FAPLEDWDEAMFDRSFNTNVKGPYFLIQALLPLLAN---PASIVLNGSI 138 (249)
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCCCCC-CCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhc---CCEEEEEech
Confidence 999999999999999999999999999876 567788999999999999999999999999999864 3688888876
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhccc
Q 010380 334 GSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPR 413 (512)
Q Consensus 334 ~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~r 413 (512)
++..+.+....|+++|+++++++++++.|+.++||+|++|+||+++|++........ . ..... ........++.+
T Consensus 139 -~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~~~t~~~~~~~~~~-~-~~~~~--~~~~~~~~~~~~ 213 (249)
T PRK06500 139 -NAHIGMPNSSVYAASKAALLSLAKTLSGELLPRGIRVNAVSPGPVQTPLYGKLGLPE-A-TLDAV--AAQIQALVPLGR 213 (249)
T ss_pred -HhccCCCCccHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCCCHHHHhhccCc-c-chHHH--HHHHHhcCCCCC
Confidence 466677889999999999999999999999999999999999999999864311000 0 00000 001112234567
Q ss_pred cccchhhhhhhhhcCChHHHHHHHHHHhccCc
Q 010380 414 IRVVKGSGKAINYLTPPRILLALVTAWLRRGR 445 (512)
Q Consensus 414 ~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~ 445 (512)
...|+++++++.||+++...+.++..+..+|+
T Consensus 214 ~~~~~~va~~~~~l~~~~~~~~~g~~i~~~gg 245 (249)
T PRK06500 214 FGTPEEIAKAVLYLASDESAFIVGSEIIVDGG 245 (249)
T ss_pred CcCHHHHHHHHHHHcCccccCccCCeEEECCC
Confidence 78899999999999987665555555544443
|
|
| >PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=264.02 Aligned_cols=243 Identities=21% Similarity=0.277 Sum_probs=196.4
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
+++++|+++||||++|||++++++|+++|++|++++|+. +.. .+.++.++++|+
T Consensus 4 ~~~~~k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~~---------~~~-----------------~~~~~~~~~~D~ 57 (252)
T PRK08220 4 MDFSGKTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQAF---------LTQ-----------------EDYPFATFVLDV 57 (252)
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecch---------hhh-----------------cCCceEEEEecC
Confidence 568899999999999999999999999999999999986 111 235688899999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|+++++++++++.+.++++|++|||||... ..++.+.+.+++++++++|+.+++.++++++|.|+++ +.++||++||
T Consensus 58 ~~~~~~~~~~~~~~~~~~~id~vi~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~g~iv~~ss 135 (252)
T PRK08220 58 SDAAAVAQVCQRLLAETGPLDVLVNAAGILR-MGATDSLSDEDWQQTFAVNAGGAFNLFRAVMPQFRRQ-RSGAIVTVGS 135 (252)
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCcCC-CCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhC-CCCEEEEECC
Confidence 9999999999999999999999999999876 5778888999999999999999999999999999876 5679999998
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHH-HHHhc
Q 010380 333 AGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETV-ARTLV 411 (512)
Q Consensus 333 ~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~v-A~~~l 411 (512)
. .+..+.++...|++||++++.|+++++.|+.+.||+||+|+||++.|++........... ........+.. ...+.
T Consensus 136 ~-~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~pg~v~t~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 213 (252)
T PRK08220 136 N-AAHVPRIGMAAYGASKAALTSLAKCVGLELAPYGVRCNVVSPGSTDTDMQRTLWVDEDGE-QQVIAGFPEQFKLGIPL 213 (252)
T ss_pred c-hhccCCCCCchhHHHHHHHHHHHHHHHHHhhHhCeEEEEEecCcCcchhhhhhccchhhh-hhhhhhHHHHHhhcCCC
Confidence 7 566777888999999999999999999999999999999999999999864321111000 00000011111 12346
Q ss_pred cccccchhhhhhhhhcCChHHHHHHHHHHhccCc
Q 010380 412 PRIRVVKGSGKAINYLTPPRILLALVTAWLRRGR 445 (512)
Q Consensus 412 ~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~ 445 (512)
+++..|+|+++++.||+++.....++.....+|+
T Consensus 214 ~~~~~~~dva~~~~~l~~~~~~~~~g~~i~~~gg 247 (252)
T PRK08220 214 GKIARPQEIANAVLFLASDLASHITLQDIVVDGG 247 (252)
T ss_pred cccCCHHHHHHHHHHHhcchhcCccCcEEEECCC
Confidence 7788999999999999988765555554444443
|
|
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.8e-31 Score=268.77 Aligned_cols=244 Identities=22% Similarity=0.264 Sum_probs=197.7
Q ss_pred cCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhh-HHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEc
Q 010380 172 HCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSES-VRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIAC 250 (512)
Q Consensus 172 ~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~-l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~ 250 (512)
..++++|++|||||++|||.++|++|+++|++|++++|+.+. ++...+.+.. .+.++.++.|
T Consensus 41 ~~~~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~-----------------~~~~~~~~~~ 103 (290)
T PRK06701 41 SGKLKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEK-----------------EGVKCLLIPG 103 (290)
T ss_pred ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHh-----------------cCCeEEEEEc
Confidence 357889999999999999999999999999999999998643 4444333322 3457889999
Q ss_pred cCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEee
Q 010380 251 DVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNM 330 (512)
Q Consensus 251 Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~v 330 (512)
|++|.++++++++++.+.++++|+||||||......++.+.+.++|++++++|+.+++.+++++++.|.+ .++||++
T Consensus 104 Dl~~~~~~~~~~~~i~~~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~---~g~iV~i 180 (290)
T PRK06701 104 DVSDEAFCKDAVEETVRELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQ---GSAIINT 180 (290)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhh---CCeEEEE
Confidence 9999999999999999999999999999998653466888999999999999999999999999999964 4789999
Q ss_pred cCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHh
Q 010380 331 DGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTL 410 (512)
Q Consensus 331 SS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~ 410 (512)
||. ++..+.++...|++||+|++.|+++++.++.++||+|++|+||+|+|++....... ... .+......
T Consensus 181 sS~-~~~~~~~~~~~Y~~sK~a~~~l~~~la~~~~~~gIrv~~i~pG~v~T~~~~~~~~~--~~~-------~~~~~~~~ 250 (290)
T PRK06701 181 GSI-TGYEGNETLIDYSATKGAIHAFTRSLAQSLVQKGIRVNAVAPGPIWTPLIPSDFDE--EKV-------SQFGSNTP 250 (290)
T ss_pred ecc-cccCCCCCcchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCCCCCcccccccCH--HHH-------HHHHhcCC
Confidence 987 56677788899999999999999999999999999999999999999986432110 000 11122345
Q ss_pred ccccccchhhhhhhhhcCChHHHHHHHHHHhccCc
Q 010380 411 VPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGR 445 (512)
Q Consensus 411 l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~ 445 (512)
+++...++++++++.||+++.....++..+..+|+
T Consensus 251 ~~~~~~~~dva~~~~~ll~~~~~~~~G~~i~idgg 285 (290)
T PRK06701 251 MQRPGQPEELAPAYVFLASPDSSYITGQMLHVNGG 285 (290)
T ss_pred cCCCcCHHHHHHHHHHHcCcccCCccCcEEEeCCC
Confidence 67778899999999999987654444444444443
|
|
| >PRK07024 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.6e-31 Score=262.40 Aligned_cols=214 Identities=22% Similarity=0.285 Sum_probs=179.8
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChh
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPA 256 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~ 256 (512)
+|+++||||++|||.++|++|+++|++|++++|+.+++++..+++.. .+ ++.++.||++|++
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~-----------------~~-~~~~~~~Dl~~~~ 63 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGATLGLVARRTDALQAFAARLPK-----------------AA-RVSVYAADVRDAD 63 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccc-----------------CC-eeEEEEcCCCCHH
Confidence 47899999999999999999999999999999998877655444321 12 7889999999999
Q ss_pred hHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCC
Q 010380 257 DVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSG 336 (512)
Q Consensus 257 sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~ 336 (512)
++.++++++.++++++|++|||||.........+.+.+++++++++|+.|++++++.++|.|+++ +.++||++||. ++
T Consensus 64 ~i~~~~~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~l~~~~~~-~~~~iv~isS~-~~ 141 (257)
T PRK07024 64 ALAAAAADFIAAHGLPDVVIANAGISVGTLTEEREDLAVFREVMDTNYFGMVATFQPFIAPMRAA-RRGTLVGIASV-AG 141 (257)
T ss_pred HHHHHHHHHHHhCCCCCEEEECCCcCCCccccccCCHHHHHHHHhHhcHHHHHHHHHHHHHHHhc-CCCEEEEEech-hh
Confidence 99999999999999999999999986522223337889999999999999999999999999876 56899999997 57
Q ss_pred CCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhcccccc
Q 010380 337 GSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPRIRV 416 (512)
Q Consensus 337 ~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~r~~~ 416 (512)
..+.+....|++||++++.|+++++.|+.++||+|++|+||+|+|++...... ......+|+++|+.++..+..
T Consensus 142 ~~~~~~~~~Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~------~~~~~~~~~~~a~~~~~~l~~ 215 (257)
T PRK07024 142 VRGLPGAGAYSASKAAAIKYLESLRVELRPAGVRVVTIAPGYIRTPMTAHNPY------PMPFLMDADRFAARAARAIAR 215 (257)
T ss_pred cCCCCCCcchHHHHHHHHHHHHHHHHHhhccCcEEEEEecCCCcCchhhcCCC------CCCCccCHHHHHHHHHHHHhC
Confidence 77888999999999999999999999999999999999999999998643111 001123688888888766543
|
|
| >PRK12742 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.9e-31 Score=260.21 Aligned_cols=232 Identities=19% Similarity=0.310 Sum_probs=186.2
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcC-hhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRS-SESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~-~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
++++|+++||||++|||+++|++|+++|++|++++|+ .+.++++.++ ..+.++.+|+
T Consensus 3 ~~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~~----------------------~~~~~~~~D~ 60 (237)
T PRK12742 3 AFTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLAQE----------------------TGATAVQTDS 60 (237)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHH----------------------hCCeEEecCC
Confidence 4678999999999999999999999999999988764 4443332221 1245678999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|.+++.++++ +++++|++|||||... ..+..+.+.++|++++++|+.+++.+++.+++.|.+ .++||++||
T Consensus 61 ~~~~~~~~~~~----~~~~id~li~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~---~g~iv~isS 132 (237)
T PRK12742 61 ADRDAVIDVVR----KSGALDILVVNAGIAV-FGDALELDADDIDRLFKINIHAPYHASVEAARQMPE---GGRIIIIGS 132 (237)
T ss_pred CCHHHHHHHHH----HhCCCcEEEECCCCCC-CCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhc---CCeEEEEec
Confidence 99998877664 3578999999999875 466778899999999999999999999999999963 479999998
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhcc
Q 010380 333 AGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVP 412 (512)
Q Consensus 333 ~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~ 412 (512)
..+...+.++...|+++|++++.+++.++.|+.++||+||+|+||+++|++.....+ .. .......+++
T Consensus 133 ~~~~~~~~~~~~~Y~~sKaa~~~~~~~la~~~~~~gi~v~~v~Pg~~~t~~~~~~~~-----~~------~~~~~~~~~~ 201 (237)
T PRK12742 133 VNGDRMPVAGMAAYAASKSALQGMARGLARDFGPRGITINVVQPGPIDTDANPANGP-----MK------DMMHSFMAIK 201 (237)
T ss_pred cccccCCCCCCcchHHhHHHHHHHHHHHHHHHhhhCeEEEEEecCcccCCccccccH-----HH------HHHHhcCCCC
Confidence 743345678889999999999999999999999999999999999999998532110 00 0011123567
Q ss_pred ccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 413 RIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 413 r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
+...|++++..+.||+++...+.++..+..||++
T Consensus 202 ~~~~p~~~a~~~~~l~s~~~~~~~G~~~~~dgg~ 235 (237)
T PRK12742 202 RHGRPEEVAGMVAWLAGPEASFVTGAMHTIDGAF 235 (237)
T ss_pred CCCCHHHHHHHHHHHcCcccCcccCCEEEeCCCc
Confidence 8889999999999999988777777777777664
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.5e-31 Score=265.79 Aligned_cols=228 Identities=25% Similarity=0.289 Sum_probs=183.3
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCCh
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEP 255 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~ 255 (512)
++|+++||||++|||+++|++|+++|++|++++|+.+++++. .+ ..+.++.+|++|+
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~----~~-------------------~~~~~~~~Dv~~~ 58 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDL----AS-------------------LGVHPLSLDVTDE 58 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH----Hh-------------------CCCeEEEeeCCCH
Confidence 578999999999999999999999999999999998765432 11 2367799999999
Q ss_pred hhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCC
Q 010380 256 ADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGS 335 (512)
Q Consensus 256 ~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a 335 (512)
++++++++++.+.++++|+||||||+.. .+++.+.+.++++.++++|+.+++.+++.++|.|+++ +.|+||++||. .
T Consensus 59 ~~~~~~~~~~~~~~~~id~li~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~-~~g~iv~isS~-~ 135 (273)
T PRK06182 59 ASIKAAVDTIIAEEGRIDVLVNNAGYGS-YGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQ-RSGRIINISSM-G 135 (273)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCCcCC-CCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhc-CCCEEEEEcch-h
Confidence 9999999999999999999999999876 6788899999999999999999999999999999876 56899999987 5
Q ss_pred CCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhh-hhhhcCCHHHH-----HHH
Q 010380 336 GGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQM-FNIICELPETV-----ART 409 (512)
Q Consensus 336 ~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~-~~~~~~~pe~v-----A~~ 409 (512)
+..+.+....|++||+++++|+++++.|+.+.||+|++|+||+|+|++............ ........+.. ...
T Consensus 136 ~~~~~~~~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (273)
T PRK06182 136 GKIYTPLGAWYHATKFALEGFSDALRLEVAPFGIDVVVIEPGGIKTEWGDIAADHLLKTSGNGAYAEQAQAVAASMRSTY 215 (273)
T ss_pred hcCCCCCccHhHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCcccccchhhhhhhcccccccchHHHHHHHHHHHHHhh
Confidence 666777888999999999999999999999999999999999999998532111000000 00000000011 112
Q ss_pred hccccccchhhhhhhhhcCC
Q 010380 410 LVPRIRVVKGSGKAINYLTP 429 (512)
Q Consensus 410 ~l~r~~~~~~va~~v~~L~s 429 (512)
..++...|++++..+.+++.
T Consensus 216 ~~~~~~~~~~vA~~i~~~~~ 235 (273)
T PRK06182 216 GSGRLSDPSVIADAISKAVT 235 (273)
T ss_pred ccccCCCHHHHHHHHHHHHh
Confidence 34566788888888888775
|
|
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.9e-31 Score=260.55 Aligned_cols=236 Identities=28% Similarity=0.401 Sum_probs=195.1
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
+++++++++||||++|||.+++++|+++|++|++++|+.++.++..+++.. +.++.++.||+
T Consensus 1 ~~~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~------------------~~~~~~~~~D~ 62 (251)
T PRK07231 1 MRLEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILA------------------GGRAIAVAADV 62 (251)
T ss_pred CCcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc------------------CCeEEEEECCC
Confidence 357889999999999999999999999999999999998877666555432 24688999999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|+++++++++++.+.++++|+||||||......++.+.+.+++++.+++|+.+++.+++.+++.|.++ +.++||++||
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~iv~~sS 141 (251)
T PRK07231 63 SDEADVEAAVAAALERFGSVDILVNNAGTTHRNGPLLDVDEAEFDRIFAVNVKSPYLWTQAAVPAMRGE-GGGAIVNVAS 141 (251)
T ss_pred CCHHHHHHHHHHHHHHhCCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhc-CCcEEEEEcC
Confidence 999999999999999999999999999986545667888999999999999999999999999999876 5689999998
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhcc
Q 010380 333 AGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVP 412 (512)
Q Consensus 333 ~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~ 412 (512)
. .+..+.++...|+.+|++++.+++.++.++.+.||+|++++||+++|++.........+.... ......+..
T Consensus 142 ~-~~~~~~~~~~~y~~sk~~~~~~~~~~a~~~~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~------~~~~~~~~~ 214 (251)
T PRK07231 142 T-AGLRPRPGLGWYNASKGAVITLTKALAAELGPDKIRVNAVAPVVVETGLLEAFMGEPTPENRA------KFLATIPLG 214 (251)
T ss_pred h-hhcCCCCCchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEECccCCCcchhhhcccChHHHH------HHhcCCCCC
Confidence 7 567788889999999999999999999999998999999999999999865322110000000 011123345
Q ss_pred ccccchhhhhhhhhcCChHHHH
Q 010380 413 RIRVVKGSGKAINYLTPPRILL 434 (512)
Q Consensus 413 r~~~~~~va~~v~~L~s~~~~~ 434 (512)
++..|++++.++.+|+.+....
T Consensus 215 ~~~~~~dva~~~~~l~~~~~~~ 236 (251)
T PRK07231 215 RLGTPEDIANAALFLASDEASW 236 (251)
T ss_pred CCcCHHHHHHHHHHHhCccccC
Confidence 6778899999999999765433
|
|
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=3e-31 Score=266.27 Aligned_cols=185 Identities=24% Similarity=0.322 Sum_probs=166.1
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCCh
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEP 255 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~ 255 (512)
.+|+++||||++|||+++|++|+++|++|++++|+.+.++++ .+ ..+.++.+|++|+
T Consensus 3 ~~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l----~~-------------------~~~~~~~~Dl~d~ 59 (277)
T PRK05993 3 MKRSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAAL----EA-------------------EGLEAFQLDYAEP 59 (277)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHH----HH-------------------CCceEEEccCCCH
Confidence 368999999999999999999999999999999998765432 22 1366789999999
Q ss_pred hhHHHHHHHHHHHc-CCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCC
Q 010380 256 ADVQKLSNFAVNEF-GSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAG 334 (512)
Q Consensus 256 ~sv~~~~~~i~~~~-g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~ 334 (512)
++++++++.+.+.+ +++|+||||||+.. .+++.+.+.++++.++++|+.|++.+++.++|.|.++ +.|+||++||.
T Consensus 60 ~~~~~~~~~~~~~~~g~id~li~~Ag~~~-~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~~-~~g~iv~isS~- 136 (277)
T PRK05993 60 ESIAALVAQVLELSGGRLDALFNNGAYGQ-PGAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRKQ-GQGRIVQCSSI- 136 (277)
T ss_pred HHHHHHHHHHHHHcCCCccEEEECCCcCC-CCCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhhc-CCCEEEEECCh-
Confidence 99999999987766 68999999999877 5778889999999999999999999999999999876 56899999997
Q ss_pred CCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccC
Q 010380 335 SGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLS 386 (512)
Q Consensus 335 a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~ 386 (512)
.+..+.++.+.|++||+|+++|+++|+.|+.++||+|++|+||+|+|++...
T Consensus 137 ~~~~~~~~~~~Y~asK~a~~~~~~~l~~el~~~gi~v~~v~Pg~v~T~~~~~ 188 (277)
T PRK05993 137 LGLVPMKYRGAYNASKFAIEGLSLTLRMELQGSGIHVSLIEPGPIETRFRAN 188 (277)
T ss_pred hhcCCCCccchHHHHHHHHHHHHHHHHHHhhhhCCEEEEEecCCccCchhhH
Confidence 6777888899999999999999999999999999999999999999998753
|
|
| >PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.8e-31 Score=260.27 Aligned_cols=232 Identities=24% Similarity=0.273 Sum_probs=188.2
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
+++.+|+++||||++|||.+++++|+++|++|++++|+.... ...++.++.+|+
T Consensus 1 ~~l~~k~~lVtGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~--------------------------~~~~~~~~~~D~ 54 (235)
T PRK06550 1 QEFMTKTVLITGAASGIGLAQARAFLAQGAQVYGVDKQDKPD--------------------------LSGNFHFLQLDL 54 (235)
T ss_pred CCCCCCEEEEcCCCchHHHHHHHHHHHCCCEEEEEeCCcccc--------------------------cCCcEEEEECCh
Confidence 357889999999999999999999999999999999975321 123577899999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+++ ++++.+.++++|++|||||+.....++.+.+.+++++++++|+.++++++++++|.|+++ +.++||++||
T Consensus 55 ~~~------~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~iv~~sS 127 (235)
T PRK06550 55 SDD------LEPLFDWVPSVDILCNTAGILDDYKPLLDTSLEEWQHIFDTNLTSTFLLTRAYLPQMLER-KSGIIINMCS 127 (235)
T ss_pred HHH------HHHHHHhhCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCcEEEEEcC
Confidence 987 444555678999999999986434567888999999999999999999999999999876 5689999998
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhcc
Q 010380 333 AGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVP 412 (512)
Q Consensus 333 ~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~ 412 (512)
. ++..+.++...|+++|+++++++++++.|+.++||+||+|+||+|+|++...... ..... .......++.
T Consensus 128 ~-~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~pg~v~t~~~~~~~~--~~~~~------~~~~~~~~~~ 198 (235)
T PRK06550 128 I-ASFVAGGGGAAYTASKHALAGFTKQLALDYAKDGIQVFGIAPGAVKTPMTAADFE--PGGLA------DWVARETPIK 198 (235)
T ss_pred h-hhccCCCCCcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCccCcccccccC--chHHH------HHHhccCCcC
Confidence 7 5667778889999999999999999999999999999999999999998643211 11110 0111234567
Q ss_pred ccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 413 RIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 413 r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
++..|++++..+.||+++.....++..+..||++
T Consensus 199 ~~~~~~~~a~~~~~l~s~~~~~~~g~~~~~~gg~ 232 (235)
T PRK06550 199 RWAEPEEVAELTLFLASGKADYMQGTIVPIDGGW 232 (235)
T ss_pred CCCCHHHHHHHHHHHcChhhccCCCcEEEECCce
Confidence 8889999999999999987766666666666654
|
|
| >COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.6e-31 Score=247.40 Aligned_cols=187 Identities=26% Similarity=0.362 Sum_probs=169.2
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
|+++|.++|||||++|||+++|++|.+.|-+|++++|++++++++.++. ..++...||+
T Consensus 1 mk~tgnTiLITGG~sGIGl~lak~f~elgN~VIi~gR~e~~L~e~~~~~---------------------p~~~t~v~Dv 59 (245)
T COG3967 1 MKTTGNTILITGGASGIGLALAKRFLELGNTVIICGRNEERLAEAKAEN---------------------PEIHTEVCDV 59 (245)
T ss_pred CcccCcEEEEeCCcchhhHHHHHHHHHhCCEEEEecCcHHHHHHHHhcC---------------------cchheeeecc
Confidence 4678999999999999999999999999999999999999988776653 4577899999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCC-cCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeec
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPL-LQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD 331 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~-~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vS 331 (512)
.|.++.+++++++.++|+.+++||||||+....... .+-..++.++.+++|+.++++++++++|++.++ +.+.||++|
T Consensus 60 ~d~~~~~~lvewLkk~~P~lNvliNNAGIqr~~dlt~~e~~~~~~~~eI~~Nl~API~Lt~~~lphl~~q-~~a~IInVS 138 (245)
T COG3967 60 ADRDSRRELVEWLKKEYPNLNVLINNAGIQRNEDLTGAEDLLDDAEQEIATNLLAPIRLTALLLPHLLRQ-PEATIINVS 138 (245)
T ss_pred cchhhHHHHHHHHHhhCCchheeeecccccchhhccCCcchhhHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCceEEEec
Confidence 999999999999999999999999999997632222 244567789999999999999999999999998 489999999
Q ss_pred CCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCC
Q 010380 332 GAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTD 382 (512)
Q Consensus 332 S~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~ 382 (512)
|. .++.|....+.||++|+|++.|+.+|+..++..+|.|.-+.|..|+|+
T Consensus 139 SG-LafvPm~~~PvYcaTKAaiHsyt~aLR~Qlk~t~veVIE~~PP~V~t~ 188 (245)
T COG3967 139 SG-LAFVPMASTPVYCATKAAIHSYTLALREQLKDTSVEVIELAPPLVDTT 188 (245)
T ss_pred cc-cccCcccccccchhhHHHHHHHHHHHHHHhhhcceEEEEecCCceecC
Confidence 86 688899899999999999999999999999999999999999999997
|
|
| >PRK06138 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.1e-31 Score=259.90 Aligned_cols=244 Identities=23% Similarity=0.344 Sum_probs=199.1
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
|++++|+++||||++|||.++|++|+++|++|++++|+.+..++..+++. .+.++.++.||+
T Consensus 1 m~~~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~------------------~~~~~~~~~~D~ 62 (252)
T PRK06138 1 MRLAGRVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIA------------------AGGRAFARQGDV 62 (252)
T ss_pred CCCCCcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHh------------------cCCeEEEEEcCC
Confidence 45789999999999999999999999999999999999877766555442 135688999999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|+++++++++++.++++++|+||||||... ..++.+.+.+++++++++|+.+++.+++.++|.|+++ +.++||++||
T Consensus 63 ~~~~~~~~~~~~i~~~~~~id~vi~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~ii~~sS 140 (252)
T PRK06138 63 GSAEAVEALVDFVAARWGRLDVLVNNAGFGC-GGTVVTTDEADWDAVMRVNVGGVFLWAKYAIPIMQRQ-GGGSIVNTAS 140 (252)
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCCCC-CCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHHHHhc-CCeEEEEECC
Confidence 9999999999999999999999999999876 5677888999999999999999999999999999876 5689999998
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHH-----
Q 010380 333 AGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVA----- 407 (512)
Q Consensus 333 ~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA----- 407 (512)
. .+..+.++...|+++|++++.++++++.|+.+.||+|++|+||++.|++........ ..++...
T Consensus 141 ~-~~~~~~~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~---------~~~~~~~~~~~~ 210 (252)
T PRK06138 141 Q-LALAGGRGRAAYVASKGAIASLTRAMALDHATDGIRVNAVAPGTIDTPYFRRIFARH---------ADPEALREALRA 210 (252)
T ss_pred h-hhccCCCCccHHHHHHHHHHHHHHHHHHHHHhcCeEEEEEEECCccCcchhhhhccc---------cChHHHHHHHHh
Confidence 7 456677888999999999999999999999999999999999999999864321100 0111111
Q ss_pred HHhccccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 408 RTLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 408 ~~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
..++.+...++++++.+.+++.+.....++..+..+|+|
T Consensus 211 ~~~~~~~~~~~d~a~~~~~l~~~~~~~~~g~~~~~~~g~ 249 (252)
T PRK06138 211 RHPMNRFGTAEEVAQAALFLASDESSFATGTTLVVDGGW 249 (252)
T ss_pred cCCCCCCcCHHHHHHHHHHHcCchhcCccCCEEEECCCe
Confidence 223445667889999998888776544444444445544
|
|
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.3e-31 Score=261.05 Aligned_cols=236 Identities=23% Similarity=0.317 Sum_probs=193.3
Q ss_pred cCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEcc
Q 010380 172 HCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACD 251 (512)
Q Consensus 172 ~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~D 251 (512)
-.++++|+++||||++|||.++|++|+++|++|++++|+.++++...+++.. .+.++.++.||
T Consensus 7 ~~~~~~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~-----------------~~~~~~~~~~D 69 (259)
T PRK08213 7 LFDLSGKTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEA-----------------LGIDALWIAAD 69 (259)
T ss_pred hhCcCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHh-----------------cCCeEEEEEcc
Confidence 3467899999999999999999999999999999999998887776666644 34578889999
Q ss_pred CCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHH-HHhCCCCCeEEee
Q 010380 252 VCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRV-MRDQPKGGHIFNM 330 (512)
Q Consensus 252 ltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~-m~~~~~~g~IV~v 330 (512)
++|+++++++++++.+.++++|++|||||... ..+..+.+.++|++++++|+.+++++++++.|+ |.++ +.++||++
T Consensus 70 l~d~~~i~~~~~~~~~~~~~id~vi~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~-~~~~~v~~ 147 (259)
T PRK08213 70 VADEADIERLAEETLERFGHVDILVNNAGATW-GAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPR-GYGRIINV 147 (259)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCEEEECCCCCC-CCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhc-CCeEEEEE
Confidence 99999999999999999999999999999865 466778899999999999999999999999998 6654 56799999
Q ss_pred cCCCCCCCCCC----CcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHH
Q 010380 331 DGAGSGGSSTP----LTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETV 406 (512)
Q Consensus 331 SS~~a~~~~~p----~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~v 406 (512)
||. ++..+.+ +...|+++|++++.++++++.++.+.||++++|+||+++|++.....+. +. .+..
T Consensus 148 sS~-~~~~~~~~~~~~~~~Y~~sKa~~~~~~~~~a~~~~~~gi~v~~v~Pg~~~t~~~~~~~~~----~~------~~~~ 216 (259)
T PRK08213 148 ASV-AGLGGNPPEVMDTIAYNTSKGAVINFTRALAAEWGPHGIRVNAIAPGFFPTKMTRGTLER----LG------EDLL 216 (259)
T ss_pred CCh-hhccCCCccccCcchHHHHHHHHHHHHHHHHHHhcccCEEEEEEecCcCCCcchhhhhHH----HH------HHHH
Confidence 986 3333333 3588999999999999999999999999999999999999975322110 00 1112
Q ss_pred HHHhccccccchhhhhhhhhcCChHHHHHHH
Q 010380 407 ARTLVPRIRVVKGSGKAINYLTPPRILLALV 437 (512)
Q Consensus 407 A~~~l~r~~~~~~va~~v~~L~s~~~~~~~~ 437 (512)
...++.+...+++++..+.||+++...+..+
T Consensus 217 ~~~~~~~~~~~~~va~~~~~l~~~~~~~~~G 247 (259)
T PRK08213 217 AHTPLGRLGDDEDLKGAALLLASDASKHITG 247 (259)
T ss_pred hcCCCCCCcCHHHHHHHHHHHhCccccCccC
Confidence 2345567778999999999999876544333
|
|
| >PRK05650 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.4e-30 Score=260.03 Aligned_cols=218 Identities=25% Similarity=0.357 Sum_probs=186.2
Q ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhh
Q 010380 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPAD 257 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~s 257 (512)
|+++||||++|||++++++|+++|++|++++|+.++++++.+++.. .+.++.++.||++|+++
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~-----------------~~~~~~~~~~D~~~~~~ 63 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLRE-----------------AGGDGFYQRCDVRDYSQ 63 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-----------------cCCceEEEEccCCCHHH
Confidence 4789999999999999999999999999999999888887777754 34578889999999999
Q ss_pred HHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCCC
Q 010380 258 VQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGG 337 (512)
Q Consensus 258 v~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~~ 337 (512)
+.++++.+.+.++++|+||||||... ..++.+.+.+++++++++|+.+++.+++.++|.|.++ +.++||++||. .+.
T Consensus 64 ~~~~~~~i~~~~~~id~lI~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~iv~vsS~-~~~ 140 (270)
T PRK05650 64 LTALAQACEEKWGGIDVIVNNAGVAS-GGFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKRQ-KSGRIVNIASM-AGL 140 (270)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCC-CCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhC-CCCEEEEECCh-hhc
Confidence 99999999999999999999999876 5778889999999999999999999999999999876 46899999987 567
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhh---hhh---hhhhcCCHHHHHHHhc
Q 010380 338 SSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQN---KQM---FNIICELPETVARTLV 411 (512)
Q Consensus 338 ~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~---~~~---~~~~~~~pe~vA~~~l 411 (512)
.+.++.+.|+++|+++++|+++|+.|+.+.||+|++|+||+++|++......... ... ......+|+++|+.++
T Consensus 141 ~~~~~~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vA~~i~ 220 (270)
T PRK05650 141 MQGPAMSSYNVAKAGVVALSETLLVELADDEIGVHVVCPSFFQTNLLDSFRGPNPAMKAQVGKLLEKSPITAADIADYIY 220 (270)
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCccccCcccccccCchhHHHHHHHHhhcCCCCHHHHHHHHH
Confidence 7888999999999999999999999999999999999999999998754321111 111 1111246788888777
Q ss_pred cccc
Q 010380 412 PRIR 415 (512)
Q Consensus 412 ~r~~ 415 (512)
..+.
T Consensus 221 ~~l~ 224 (270)
T PRK05650 221 QQVA 224 (270)
T ss_pred HHHh
Confidence 6554
|
|
| >TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.7e-31 Score=259.94 Aligned_cols=246 Identities=21% Similarity=0.309 Sum_probs=200.1
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCC
Q 010380 175 AGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCE 254 (512)
Q Consensus 175 l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd 254 (512)
+++|+++||||++|||.+++++|+++|++|++++|+.+..+++.+++.+ .+.++.++.+|++|
T Consensus 1 ~~~~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~-----------------~~~~~~~~~~d~~~ 63 (250)
T TIGR03206 1 LKDKTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRA-----------------KGGNAQAFACDITD 63 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHh-----------------cCCcEEEEEcCCCC
Confidence 4689999999999999999999999999999999998887776666644 34568899999999
Q ss_pred hhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCC
Q 010380 255 PADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAG 334 (512)
Q Consensus 255 ~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~ 334 (512)
.++++++++.+.+.++++|++|||||... ..++.+.+.+++++.+++|+.+++++++.+++.|+++ +.++||++||.
T Consensus 64 ~~~~~~~~~~~~~~~~~~d~vi~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~ii~iss~- 140 (250)
T TIGR03206 64 RDSVDTAVAAAEQALGPVDVLVNNAGWDK-FGPFTKTEPPLWERLIAINLTGALHMHHAVLPGMVER-GAGRIVNIASD- 140 (250)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCC-CCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCeEEEEECch-
Confidence 99999999999999999999999999865 5677888999999999999999999999999999876 56899999987
Q ss_pred CCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhcccc
Q 010380 335 SGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPRI 414 (512)
Q Consensus 335 a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~r~ 414 (512)
++..+.++...|+++|+|++.++++++.|+.+.||+++.++||+++|++........... ... ........+.+++
T Consensus 141 ~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pg~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~ 216 (250)
T TIGR03206 141 AARVGSSGEAVYAACKGGLVAFSKTMAREHARHGITVNVVCPGPTDTALLDDICGGAENP-EKL---REAFTRAIPLGRL 216 (250)
T ss_pred hhccCCCCCchHHHHHHHHHHHHHHHHHHHhHhCcEEEEEecCcccchhHHhhhhccCCh-HHH---HHHHHhcCCccCC
Confidence 567778889999999999999999999999988999999999999999864321100000 000 0111223345667
Q ss_pred ccchhhhhhhhhcCChHHHHHHHHHHhccC
Q 010380 415 RVVKGSGKAINYLTPPRILLALVTAWLRRG 444 (512)
Q Consensus 415 ~~~~~va~~v~~L~s~~~~~~~~~~~~~~g 444 (512)
..++|+++.+.||+++...+.++..+..+|
T Consensus 217 ~~~~dva~~~~~l~~~~~~~~~g~~~~~~~ 246 (250)
T TIGR03206 217 GQPDDLPGAILFFSSDDASFITGQVLSVSG 246 (250)
T ss_pred cCHHHHHHHHHHHcCcccCCCcCcEEEeCC
Confidence 889999999999998765444444444333
|
Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate. |
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.4e-31 Score=257.51 Aligned_cols=242 Identities=22% Similarity=0.321 Sum_probs=199.5
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
++++|+++||||++|||.++|++|+++|++|++++|+++++++..++++. .+.++.++.+|++
T Consensus 4 ~~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~-----------------~~~~~~~~~~Dl~ 66 (250)
T PRK12939 4 NLAGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEA-----------------AGGRAHAIAADLA 66 (250)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHh-----------------cCCcEEEEEccCC
Confidence 46789999999999999999999999999999999998888777766644 2457889999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
|+++++++++++.+.++++|+||||||... ..++.+.+.++++..+++|+.+++.+++.+.|.|.++ +.|++|++||.
T Consensus 67 ~~~~~~~~~~~~~~~~~~id~vi~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~g~iv~isS~ 144 (250)
T PRK12939 67 DPASVQRFFDAAAAALGGLDGLVNNAGITN-SKSATELDIDTWDAVMNVNVRGTFLMLRAALPHLRDS-GRGRIVNLASD 144 (250)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCC-CCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCeEEEEECch
Confidence 999999999999999999999999999876 4777888999999999999999999999999999876 46899999987
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhccc
Q 010380 334 GSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPR 413 (512)
Q Consensus 334 ~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~r 413 (512)
.+..+.+....|+++|++++.+++.++.++.+.+|+|++|+||+++|++....... .... ......++++
T Consensus 145 -~~~~~~~~~~~y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~~~~~~---~~~~------~~~~~~~~~~ 214 (250)
T PRK12939 145 -TALWGAPKLGAYVASKGAVIGMTRSLARELGGRGITVNAIAPGLTATEATAYVPAD---ERHA------YYLKGRALER 214 (250)
T ss_pred -hhccCCCCcchHHHHHHHHHHHHHHHHHHHhhhCEEEEEEEECCCCCccccccCCh---HHHH------HHHhcCCCCC
Confidence 56677788899999999999999999999999999999999999999987542210 0100 0111234567
Q ss_pred cccchhhhhhhhhcCChHHHHHHHHHHhccC
Q 010380 414 IRVVKGSGKAINYLTPPRILLALVTAWLRRG 444 (512)
Q Consensus 414 ~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g 444 (512)
+..++|+++++.+++.+...+..+..+..+|
T Consensus 215 ~~~~~dva~~~~~l~~~~~~~~~G~~i~~~g 245 (250)
T PRK12939 215 LQVPDDVAGAVLFLLSDAARFVTGQLLPVNG 245 (250)
T ss_pred CCCHHHHHHHHHHHhCccccCccCcEEEECC
Confidence 7888999999999887654333333333333
|
|
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.6e-31 Score=258.74 Aligned_cols=248 Identities=23% Similarity=0.373 Sum_probs=199.5
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
++++|+++||||++|||++++++|+++|++|++++|++++.++..+++.+ .+.++.++.+|++
T Consensus 4 ~~~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~-----------------~~~~~~~~~~Dl~ 66 (262)
T PRK13394 4 NLNGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINK-----------------AGGKAIGVAMDVT 66 (262)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHh-----------------cCceEEEEECCCC
Confidence 36789999999999999999999999999999999999888777777654 3457888999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHH-HhCCCCCeEEeecC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVM-RDQPKGGHIFNMDG 332 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m-~~~~~~g~IV~vSS 332 (512)
|+++++++++.+.+.++++|+||||||... ..++.+.+.++++..+++|+.+++.+++.+++.| ++. +.++||++||
T Consensus 67 ~~~~~~~~~~~~~~~~~~~d~vi~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~-~~~~iv~~ss 144 (262)
T PRK13394 67 NEDAVNAGIDKVAERFGSVDILVSNAGIQI-VNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDD-RGGVVIYMGS 144 (262)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCccCC-CCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhc-CCcEEEEEcc
Confidence 999999999999999999999999999875 5677788899999999999999999999999999 544 5789999998
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHH---
Q 010380 333 AGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVART--- 409 (512)
Q Consensus 333 ~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~--- 409 (512)
. .+..+.+....|+++|++++++++.++.++.+.||++++|+||++.|++........ ........++..+.
T Consensus 145 ~-~~~~~~~~~~~y~~sk~a~~~~~~~la~~~~~~~i~v~~v~pg~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 219 (262)
T PRK13394 145 V-HSHEASPLKSAYVTAKHGLLGLARVLAKEGAKHNVRSHVVCPGFVRTPLVDKQIPEQ----AKELGISEEEVVKKVML 219 (262)
T ss_pred h-hhcCCCCCCcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccchhhhhhhHhh----hhccCCChHHHHHHHHh
Confidence 7 566677788899999999999999999999999999999999999999854321110 00011122222222
Q ss_pred ---hccccccchhhhhhhhhcCChHHHHHHHHHHhccCc
Q 010380 410 ---LVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGR 445 (512)
Q Consensus 410 ---~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~ 445 (512)
...++..++|++.++.++++.......+..+..+++
T Consensus 220 ~~~~~~~~~~~~dva~a~~~l~~~~~~~~~g~~~~~~~g 258 (262)
T PRK13394 220 GKTVDGVFTTVEDVAQTVLFLSSFPSAALTGQSFVVSHG 258 (262)
T ss_pred cCCCCCCCCCHHHHHHHHHHHcCccccCCcCCEEeeCCc
Confidence 235677899999999999875533333344444443
|
|
| >PRK07904 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.6e-31 Score=260.81 Aligned_cols=216 Identities=24% Similarity=0.264 Sum_probs=178.8
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEEcChhh-HHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSG-DRVVVASRSSES-VRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~G-a~Vvl~~R~~~~-l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
++|+++||||++|||+++|++|+++| ++|++++|++++ ++++.+++.+. .+.+++++.||++
T Consensus 7 ~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~----------------~~~~v~~~~~D~~ 70 (253)
T PRK07904 7 NPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAA----------------GASSVEVIDFDAL 70 (253)
T ss_pred CCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhc----------------CCCceEEEEecCC
Confidence 57899999999999999999999995 899999999886 77777777542 1236889999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
|+++++++++++.+ ++++|++|||+|...+ ......+.++..+++++|+.+++.+++.++|.|+++ +.++||++||.
T Consensus 71 ~~~~~~~~~~~~~~-~g~id~li~~ag~~~~-~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~-~~~~iv~isS~ 147 (253)
T PRK07904 71 DTDSHPKVIDAAFA-GGDVDVAIVAFGLLGD-AEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQ-GFGQIIAMSSV 147 (253)
T ss_pred ChHHHHHHHHHHHh-cCCCCEEEEeeecCCc-hhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhc-CCceEEEEech
Confidence 99999999998876 5899999999998642 211222455667899999999999999999999987 56899999998
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhccc
Q 010380 334 GSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPR 413 (512)
Q Consensus 334 ~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~r 413 (512)
.+..+.++...|++||+|+.+|+++|+.|+.++||+|++|+||+|+|++....... ....+|+++|+.++..
T Consensus 148 -~g~~~~~~~~~Y~~sKaa~~~~~~~l~~el~~~~i~v~~v~Pg~v~t~~~~~~~~~-------~~~~~~~~~A~~i~~~ 219 (253)
T PRK07904 148 -AGERVRRSNFVYGSTKAGLDGFYLGLGEALREYGVRVLVVRPGQVRTRMSAHAKEA-------PLTVDKEDVAKLAVTA 219 (253)
T ss_pred -hhcCCCCCCcchHHHHHHHHHHHHHHHHHHhhcCCEEEEEeeCceecchhccCCCC-------CCCCCHHHHHHHHHHH
Confidence 45566778889999999999999999999999999999999999999987542211 1234799999999876
Q ss_pred cccch
Q 010380 414 IRVVK 418 (512)
Q Consensus 414 ~~~~~ 418 (512)
+...+
T Consensus 220 ~~~~~ 224 (253)
T PRK07904 220 VAKGK 224 (253)
T ss_pred HHcCC
Confidence 65443
|
|
| >PRK06057 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-31 Score=261.39 Aligned_cols=235 Identities=25% Similarity=0.305 Sum_probs=190.7
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCC
Q 010380 175 AGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCE 254 (512)
Q Consensus 175 l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd 254 (512)
+++|+++||||++|||.+++++|+++|++|++++|+.+++++..+++ ...++.+|++|
T Consensus 5 ~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~----------------------~~~~~~~D~~~ 62 (255)
T PRK06057 5 LAGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAAADEV----------------------GGLFVPTDVTD 62 (255)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHc----------------------CCcEEEeeCCC
Confidence 67899999999999999999999999999999999977655443332 11468999999
Q ss_pred hhhHHHHHHHHHHHcCCCcccccccccCCC-CCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 255 PADVQKLSNFAVNEFGSIDIWINNAGTNKG-FKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 255 ~~sv~~~~~~i~~~~g~IDvLInnAG~~~~-~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
+++++++++++.+.++++|++|||||...+ ..++.+.+.+++++++++|+.+++++++.++|.|+++ +.++||++||.
T Consensus 63 ~~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~-~~g~iv~~sS~ 141 (255)
T PRK06057 63 EDAVNALFDTAAETYGSVDIAFNNAGISPPEDDSILNTGLDAWQRVQDVNLTSVYLCCKAALPHMVRQ-GKGSIINTASF 141 (255)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCcCCCCCCCcccCCHHHHHHHHHHhcHHHHHHHHHHHHHHHHh-CCcEEEEEcch
Confidence 999999999999999999999999998642 2456778899999999999999999999999999876 46899999886
Q ss_pred CCCCCCC-CCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHH----HH
Q 010380 334 GSGGSST-PLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETV----AR 408 (512)
Q Consensus 334 ~a~~~~~-p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~v----A~ 408 (512)
. +..+. ++...|++||++++++++.++.|+.+.||+|++|+||+++|++....... .++.. ..
T Consensus 142 ~-~~~g~~~~~~~Y~~sKaal~~~~~~l~~~~~~~gi~v~~i~pg~v~t~~~~~~~~~-----------~~~~~~~~~~~ 209 (255)
T PRK06057 142 V-AVMGSATSQISYTASKGGVLAMSRELGVQFARQGIRVNALCPGPVNTPLLQELFAK-----------DPERAARRLVH 209 (255)
T ss_pred h-hccCCCCCCcchHHHHHHHHHHHHHHHHHHHhhCcEEEEEeeCCcCCchhhhhccC-----------CHHHHHHHHhc
Confidence 3 33333 46778999999999999999999999999999999999999986432110 12222 22
Q ss_pred HhccccccchhhhhhhhhcCChHHHHHHHHHHhccC
Q 010380 409 TLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRG 444 (512)
Q Consensus 409 ~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g 444 (512)
.+.+++..|+++++.+.||+++...+.++..+..+|
T Consensus 210 ~~~~~~~~~~~~a~~~~~l~~~~~~~~~g~~~~~~~ 245 (255)
T PRK06057 210 VPMGRFAEPEEIAAAVAFLASDDASFITASTFLVDG 245 (255)
T ss_pred CCCCCCcCHHHHHHHHHHHhCccccCccCcEEEECC
Confidence 345678889999999999998876555554444444
|
|
| >TIGR02685 pter_reduc_Leis pteridine reductase | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-31 Score=264.48 Aligned_cols=239 Identities=17% Similarity=0.217 Sum_probs=182.8
Q ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEEcC-hhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChh
Q 010380 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRS-SESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPA 256 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~-~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~ 256 (512)
++++||||++|||+++|++|+++|++|++++|+ ++++++..+++... .+.++.++.+|++|++
T Consensus 2 ~~~lITGas~gIG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~l~~~----------------~~~~~~~~~~Dv~d~~ 65 (267)
T TIGR02685 2 PAAVVTGAAKRIGSSIAVALHQEGYRVVLHYHRSAAAASTLAAELNAR----------------RPNSAVTCQADLSNSA 65 (267)
T ss_pred CEEEEeCCCCcHHHHHHHHHHhCCCeEEEEcCCcHHHHHHHHHHHHhc----------------cCCceEEEEccCCCch
Confidence 689999999999999999999999999998654 56666665555331 2346778999999998
Q ss_pred hH----HHHHHHHHHHcCCCcccccccccCCCCCCCcCCCH-----------HHHHHHHHhhhhhHHHHHHHHHHHHHhC
Q 010380 257 DV----QKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTN-----------EEIEQIVSTNLVGSILCTREAMRVMRDQ 321 (512)
Q Consensus 257 sv----~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~-----------e~~~~~~~vNv~g~~~l~k~~lp~m~~~ 321 (512)
++ +++++.+.+.++++|+||||||... ..++.+.+. ++|++++++|+.++++++++++|.|+..
T Consensus 66 ~~~~~~~~~~~~~~~~~g~iD~lv~nAG~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~ 144 (267)
T TIGR02685 66 TLFSRCEAIIDACFRAFGRCDVLVNNASAFY-PTPLLRGDAGEGVGDKKSLEVQVAELFGSNAIAPYFLIKAFAQRQAGT 144 (267)
T ss_pred hhHHHHHHHHHHHHHccCCceEEEECCccCC-CCcccccccccccccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhc
Confidence 65 5566666677899999999999865 344444443 3589999999999999999999999653
Q ss_pred -----CCCCeEEeecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhh
Q 010380 322 -----PKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMF 396 (512)
Q Consensus 322 -----~~~g~IV~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~ 396 (512)
...+.||+++|. .+..+.++..+|++||+|+++|+++|+.|+.+.||+|++|+||++.|+.... .....
T Consensus 145 ~~~~~~~~~~iv~~~s~-~~~~~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~~~~~~~~~--~~~~~--- 218 (267)
T TIGR02685 145 RAEQRSTNLSIVNLCDA-MTDQPLLGFTMYTMAKHALEGLTRSAALELAPLQIRVNGVAPGLSLLPDAMP--FEVQE--- 218 (267)
T ss_pred ccccCCCCeEEEEehhh-hccCCCcccchhHHHHHHHHHHHHHHHHHHhhhCeEEEEEecCCccCccccc--hhHHH---
Confidence 134689999887 5667788899999999999999999999999999999999999998763211 00000
Q ss_pred hhhcCCHHHHHHHhc-cccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 397 NIICELPETVARTLV-PRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 397 ~~~~~~pe~vA~~~l-~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
......++ .++..|++++..+.||+++...+.++..+..+|++
T Consensus 219 -------~~~~~~~~~~~~~~~~~va~~~~~l~~~~~~~~~G~~~~v~gg~ 262 (267)
T TIGR02685 219 -------DYRRKVPLGQREASAEQIADVVIFLVSPKAKYITGTCIKVDGGL 262 (267)
T ss_pred -------HHHHhCCCCcCCCCHHHHHHHHHHHhCcccCCcccceEEECCce
Confidence 00112233 35678999999999999887656566555555543
|
Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family. |
| >PRK09186 flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.4e-31 Score=259.90 Aligned_cols=240 Identities=18% Similarity=0.233 Sum_probs=191.2
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCC
Q 010380 175 AGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCE 254 (512)
Q Consensus 175 l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd 254 (512)
+++|+++||||++|||+++|+.|+++|++|++++|+++++++..+++.... .+..+.++.||++|
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~---------------~~~~~~~~~~Dl~d 66 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEF---------------KSKKLSLVELDITD 66 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhc---------------CCCceeEEEecCCC
Confidence 578999999999999999999999999999999999988887777764421 12346678999999
Q ss_pred hhhHHHHHHHHHHHcCCCcccccccccCCC--CCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 255 PADVQKLSNFAVNEFGSIDIWINNAGTNKG--FKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 255 ~~sv~~~~~~i~~~~g~IDvLInnAG~~~~--~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
++++.++++++.+.++++|+||||||.... ..++.+.+.++++..+++|+.+++.++++++|.|+++ +.++||++||
T Consensus 67 ~~~~~~~~~~~~~~~~~id~vi~~A~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~iv~~sS 145 (256)
T PRK09186 67 QESLEEFLSKSAEKYGKIDGAVNCAYPRNKDYGKKFFDVSLDDFNENLSLHLGSSFLFSQQFAKYFKKQ-GGGNLVNISS 145 (256)
T ss_pred HHHHHHHHHHHHHHcCCccEEEECCccccccccCccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhc-CCceEEEEec
Confidence 999999999999999999999999986431 2467889999999999999999999999999999876 4679999998
Q ss_pred CCCCCCCC----------CCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCC
Q 010380 333 AGSGGSST----------PLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICEL 402 (512)
Q Consensus 333 ~~a~~~~~----------p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~ 402 (512)
.. +..+. .....|++||+++++|+++++.|+.+.||+||+|+||.+.|+... .+.
T Consensus 146 ~~-~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~l~~~la~e~~~~~i~v~~i~Pg~~~~~~~~--------~~~------ 210 (256)
T PRK09186 146 IY-GVVAPKFEIYEGTSMTSPVEYAAIKAGIIHLTKYLAKYFKDSNIRVNCVSPGGILDNQPE--------AFL------ 210 (256)
T ss_pred hh-hhccccchhccccccCCcchhHHHHHHHHHHHHHHHHHhCcCCeEEEEEecccccCCCCH--------HHH------
Confidence 63 32211 122479999999999999999999999999999999999876421 010
Q ss_pred HHHHHHHhccccccchhhhhhhhhcCChHHHHHHHHHHhccCc
Q 010380 403 PETVARTLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGR 445 (512)
Q Consensus 403 pe~vA~~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~ 445 (512)
.......+..++..|+|+++++.|++++...+.++..+..+|+
T Consensus 211 ~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~~g 253 (256)
T PRK09186 211 NAYKKCCNGKGMLDPDDICGTLVFLLSDQSKYITGQNIIVDDG 253 (256)
T ss_pred HHHHhcCCccCCCCHHHhhhhHhheeccccccccCceEEecCC
Confidence 0111112345667889999999999987765555555555554
|
|
| >PRK07832 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=261.02 Aligned_cols=191 Identities=26% Similarity=0.403 Sum_probs=170.5
Q ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhh
Q 010380 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPAD 257 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~s 257 (512)
|+++||||++|||+++|++|+++|++|++++|+++.+++..+++... .+..+.++.+|++|+++
T Consensus 1 k~vlItGas~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~----------------~~~~~~~~~~D~~~~~~ 64 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARAL----------------GGTVPEHRALDISDYDA 64 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc----------------CCCcceEEEeeCCCHHH
Confidence 57999999999999999999999999999999988877776666541 12235568999999999
Q ss_pred HHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCCC
Q 010380 258 VQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGG 337 (512)
Q Consensus 258 v~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~~ 337 (512)
++++++++.+.++++|+||||||... ..++.+.+.+++++.+++|+.+++.++++++|.|.+++.+++||++||. .+.
T Consensus 65 ~~~~~~~~~~~~~~id~lv~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~-~~~ 142 (272)
T PRK07832 65 VAAFAADIHAAHGSMDVVMNIAGISA-WGTVDRLTHEQWRRMVDVNLMGPIHVIETFVPPMVAAGRGGHLVNVSSA-AGL 142 (272)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCCCC-CCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccc-ccc
Confidence 99999999999999999999999876 5778899999999999999999999999999999876456899999987 566
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccC
Q 010380 338 SSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLS 386 (512)
Q Consensus 338 ~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~ 386 (512)
.+.++...|++||+|+.+|+++++.|+.+.||+|++|+||+++|++..+
T Consensus 143 ~~~~~~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~v~Pg~v~t~~~~~ 191 (272)
T PRK07832 143 VALPWHAAYSASKFGLRGLSEVLRFDLARHGIGVSVVVPGAVKTPLVNT 191 (272)
T ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCcchhc
Confidence 7788899999999999999999999999999999999999999998654
|
|
| >PRK05875 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=260.86 Aligned_cols=249 Identities=20% Similarity=0.277 Sum_probs=200.9
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
++++|+++||||++|||.+++++|+++|++|++++|+.++++...+++.... .+.++.++.+|++
T Consensus 4 ~~~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~---------------~~~~~~~~~~Dl~ 68 (276)
T PRK05875 4 SFQDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALK---------------GAGAVRYEPADVT 68 (276)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcc---------------CCCceEEEEcCCC
Confidence 4778999999999999999999999999999999999887776666554310 1246888999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
|+++++++++++.++++++|++|||||......++.+.+.+++++++++|+.+++.+++++++.|.++ +.++|+++||.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~g~iv~~sS~ 147 (276)
T PRK05875 69 DEDQVARAVDAATAWHGRLHGVVHCAGGSETIGPITQIDSDAWRRTVDLNVNGTMYVLKHAARELVRG-GGGSFVGISSI 147 (276)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCcccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCcEEEEEech
Confidence 99999999999999999999999999976434677788999999999999999999999999999876 46799999987
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhccc
Q 010380 334 GSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPR 413 (512)
Q Consensus 334 ~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~r 413 (512)
....+.+....|+++|++++.+++.++.|+...||++++|+||+++|++....... .... .+.....++++
T Consensus 148 -~~~~~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~--~~~~------~~~~~~~~~~~ 218 (276)
T PRK05875 148 -AASNTHRWFGAYGVTKSAVDHLMKLAADELGPSWVRVNSIRPGLIRTDLVAPITES--PELS------ADYRACTPLPR 218 (276)
T ss_pred -hhcCCCCCCcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCccCCccccccccC--HHHH------HHHHcCCCCCC
Confidence 56667778899999999999999999999999999999999999999986432110 0000 01112234567
Q ss_pred cccchhhhhhhhhcCChHHHHHHHHHHhccCccc
Q 010380 414 IRVVKGSGKAINYLTPPRILLALVTAWLRRGRWF 447 (512)
Q Consensus 414 ~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~ 447 (512)
+..++|++.++.||++......++..+..++++.
T Consensus 219 ~~~~~dva~~~~~l~~~~~~~~~g~~~~~~~g~~ 252 (276)
T PRK05875 219 VGEVEDVANLAMFLLSDAASWITGQVINVDGGHM 252 (276)
T ss_pred CcCHHHHHHHHHHHcCchhcCcCCCEEEECCCee
Confidence 7789999999999998755443444444555443
|
|
| >PRK05884 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-31 Score=258.12 Aligned_cols=214 Identities=17% Similarity=0.249 Sum_probs=175.2
Q ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhhH
Q 010380 179 NVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPADV 258 (512)
Q Consensus 179 ~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~sv 258 (512)
.++||||++|||+++|+.|+++|++|++++|+.+++++..+++ .+.++.||++|++++
T Consensus 2 ~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~~~~~----------------------~~~~~~~D~~~~~~v 59 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVAAKEL----------------------DVDAIVCDNTDPASL 59 (223)
T ss_pred eEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc----------------------cCcEEecCCCCHHHH
Confidence 4899999999999999999999999999999987765544332 245688999999999
Q ss_pred HHHHHHHHHHcCCCcccccccccCCC-----CCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 259 QKLSNFAVNEFGSIDIWINNAGTNKG-----FKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 259 ~~~~~~i~~~~g~IDvLInnAG~~~~-----~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
+++++++.+ ++|+||||||.... ..++.+ +.++|++++++|+.++++++++++|.|++ +|+||++||.
T Consensus 60 ~~~~~~~~~---~id~lv~~ag~~~~~~~~~~~~~~~-~~~~~~~~~~~N~~~~~~~~~~~~~~~~~---~g~Iv~isS~ 132 (223)
T PRK05884 60 EEARGLFPH---HLDTIVNVPAPSWDAGDPRTYSLAD-TANAWRNALDATVLSAVLTVQSVGDHLRS---GGSIISVVPE 132 (223)
T ss_pred HHHHHHHhh---cCcEEEECCCccccCCCCcccchhc-CHHHHHHHHHHHHHHHHHHHHHHHHHhhc---CCeEEEEecC
Confidence 999887643 69999999985321 112334 57899999999999999999999999964 4899999886
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhccc
Q 010380 334 GSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPR 413 (512)
Q Consensus 334 ~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~r 413 (512)
. .+....|++||+|+++|+++|+.|+.++||+||+|+||+++|++..... ..| .
T Consensus 133 ~-----~~~~~~Y~asKaal~~~~~~la~e~~~~gI~v~~v~PG~v~t~~~~~~~------------~~p-------~-- 186 (223)
T PRK05884 133 N-----PPAGSAEAAIKAALSNWTAGQAAVFGTRGITINAVACGRSVQPGYDGLS------------RTP-------P-- 186 (223)
T ss_pred C-----CCCccccHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccCchhhhhcc------------CCC-------C--
Confidence 3 3566889999999999999999999999999999999999998742100 011 1
Q ss_pred cccchhhhhhhhhcCChHHHHHHHHHHhccCcccc
Q 010380 414 IRVVKGSGKAINYLTPPRILLALVTAWLRRGRWFD 448 (512)
Q Consensus 414 ~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~~ 448 (512)
..|+|+++.+.||+++...+.++..+..||++..
T Consensus 187 -~~~~~ia~~~~~l~s~~~~~v~G~~i~vdgg~~~ 220 (223)
T PRK05884 187 -PVAAEIARLALFLTTPAARHITGQTLHVSHGALA 220 (223)
T ss_pred -CCHHHHHHHHHHHcCchhhccCCcEEEeCCCeec
Confidence 3778899999999999888888888888887753
|
|
| >PRK06947 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=256.85 Aligned_cols=234 Identities=26% Similarity=0.359 Sum_probs=186.2
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEE-cChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCCh
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSGDRVVVAS-RSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEP 255 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~-R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~ 255 (512)
.|+++||||++|||.++|+.|+++|++|+++. |+++.++...+++.. .+.++.++.||++|+
T Consensus 2 ~k~ilItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~Dl~~~ 64 (248)
T PRK06947 2 RKVVLITGASRGIGRATAVLAAARGWSVGINYARDAAAAEETADAVRA-----------------AGGRACVVAGDVANE 64 (248)
T ss_pred CcEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHh-----------------cCCcEEEEEeccCCH
Confidence 36899999999999999999999999998765 566666666666543 345788999999999
Q ss_pred hhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCC--CCCeEEeecCC
Q 010380 256 ADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQP--KGGHIFNMDGA 333 (512)
Q Consensus 256 ~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~--~~g~IV~vSS~ 333 (512)
++++++++++.+.++++|+||||||...+..++.+.+.++++.++++|+.+++++++.+++.|..++ +.++||++||.
T Consensus 65 ~~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~ii~~sS~ 144 (248)
T PRK06947 65 ADVIAMFDAVQSAFGRLDALVNNAGIVAPSMPLADMDAARLRRMFDTNVLGAYLCAREAARRLSTDRGGRGGAIVNVSSI 144 (248)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCccCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCCCcEEEEECch
Confidence 9999999999999999999999999875445678889999999999999999999999999987642 25789999987
Q ss_pred CCCCCCCC-CcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhcc
Q 010380 334 GSGGSSTP-LTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVP 412 (512)
Q Consensus 334 ~a~~~~~p-~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~ 412 (512)
++..+.+ ....|++||+++++|+++++.++.+.||+|++|+||+++|++.......... . +.....++.
T Consensus 145 -~~~~~~~~~~~~Y~~sK~~~~~~~~~la~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~---~------~~~~~~~~~ 214 (248)
T PRK06947 145 -ASRLGSPNEYVDYAGSKGAVDTLTLGLAKELGPHGVRVNAVRPGLIETEIHASGGQPGRA---A------RLGAQTPLG 214 (248)
T ss_pred -hhcCCCCCCCcccHhhHHHHHHHHHHHHHHhhhhCcEEEEEeccCcccccccccCCHHHH---H------HHhhcCCCC
Confidence 4444444 3568999999999999999999999999999999999999986431110000 0 001123455
Q ss_pred ccccchhhhhhhhhcCChHHHHHHH
Q 010380 413 RIRVVKGSGKAINYLTPPRILLALV 437 (512)
Q Consensus 413 r~~~~~~va~~v~~L~s~~~~~~~~ 437 (512)
+...+++++..+.|+++......++
T Consensus 215 ~~~~~e~va~~~~~l~~~~~~~~~G 239 (248)
T PRK06947 215 RAGEADEVAETIVWLLSDAASYVTG 239 (248)
T ss_pred CCcCHHHHHHHHHHHcCccccCcCC
Confidence 6678899999999998865433333
|
|
| >PRK08703 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-30 Score=254.93 Aligned_cols=225 Identities=16% Similarity=0.221 Sum_probs=186.2
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
++++|+++||||++|||+++|++|+++|++|++++|+++++++..+++.+. .+..+.++.+|++
T Consensus 3 ~l~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~----------------~~~~~~~~~~D~~ 66 (239)
T PRK08703 3 TLSDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEA----------------GHPEPFAIRFDLM 66 (239)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHc----------------CCCCcceEEeeec
Confidence 467899999999999999999999999999999999998887776666441 1235677899998
Q ss_pred C--hhhHHHHHHHHHHHc-CCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEee
Q 010380 254 E--PADVQKLSNFAVNEF-GSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNM 330 (512)
Q Consensus 254 d--~~sv~~~~~~i~~~~-g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~v 330 (512)
| .+++.++++++.+.+ +++|++|||||......++.+.+.+++++.+++|+.|++.++++++|.|.+. +.++||++
T Consensus 67 ~~~~~~~~~~~~~i~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~-~~~~iv~~ 145 (239)
T PRK08703 67 SAEEKEFEQFAATIAEATQGKLDGIVHCAGYFYALSPLDFQTVAEWVNQYRINTVAPMGLTRALFPLLKQS-PDASVIFV 145 (239)
T ss_pred ccchHHHHHHHHHHHHHhCCCCCEEEEeccccccCCCccccCHHHHHHHHHHhhhHHHHHHHHHHHHHHhC-CCCEEEEE
Confidence 6 568999999998888 8899999999986545678899999999999999999999999999999876 46899999
Q ss_pred cCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCC-CeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHH
Q 010380 331 DGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRS-KVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVART 409 (512)
Q Consensus 331 SS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~-GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~ 409 (512)
+|. .+..+.++...|++||+|++.|+++++.|+.++ +|+|++|+||+|+|++......... ++
T Consensus 146 ss~-~~~~~~~~~~~Y~~sKaa~~~~~~~la~e~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~----------~~----- 209 (239)
T PRK08703 146 GES-HGETPKAYWGGFGASKAALNYLCKVAADEWERFGNLRANVLVPGPINSPQRIKSHPGEA----------KS----- 209 (239)
T ss_pred ecc-ccccCCCCccchHHhHHHHHHHHHHHHHHhccCCCeEEEEEecCcccCccccccCCCCC----------cc-----
Confidence 987 577778888999999999999999999999876 6999999999999998643211100 00
Q ss_pred hccccccchhhhhhhhhcCChHHHH
Q 010380 410 LVPRIRVVKGSGKAINYLTPPRILL 434 (512)
Q Consensus 410 ~l~r~~~~~~va~~v~~L~s~~~~~ 434 (512)
....+++++..+.|+++++...
T Consensus 210 ---~~~~~~~~~~~~~~~~~~~~~~ 231 (239)
T PRK08703 210 ---ERKSYGDVLPAFVWWASAESKG 231 (239)
T ss_pred ---ccCCHHHHHHHHHHHhCccccC
Confidence 1246677778888888865533
|
|
| >PRK09072 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-30 Score=256.28 Aligned_cols=221 Identities=25% Similarity=0.362 Sum_probs=184.7
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
|++++++++||||++|||.+++++|+++|++|++++|+++++++..+++ + .+.++.++.+|+
T Consensus 1 m~~~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-~-----------------~~~~~~~~~~D~ 62 (263)
T PRK09072 1 MDLKDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARL-P-----------------YPGRHRWVVADL 62 (263)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH-h-----------------cCCceEEEEccC
Confidence 4568899999999999999999999999999999999988877666555 2 235788899999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|+++++++++.+.+ ++++|+||||||... ..++.+.+.+++++++++|+.|++++++.++|+|.++ +.++||++||
T Consensus 63 ~d~~~~~~~~~~~~~-~~~id~lv~~ag~~~-~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~-~~~~iv~isS 139 (263)
T PRK09072 63 TSEAGREAVLARARE-MGGINVLINNAGVNH-FALLEDQDPEAIERLLALNLTAPMQLTRALLPLLRAQ-PSAMVVNVGS 139 (263)
T ss_pred CCHHHHHHHHHHHHh-cCCCCEEEECCCCCC-ccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhc-CCCEEEEecC
Confidence 999999999998876 799999999999876 5778889999999999999999999999999999876 4689999988
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhcc
Q 010380 333 AGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVP 412 (512)
Q Consensus 333 ~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~ 412 (512)
. .+..+.++...|+++|+++.+++++++.|+.+.||+|++|+||+++|++............ .....+|+++|+.++.
T Consensus 140 ~-~~~~~~~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~Pg~~~t~~~~~~~~~~~~~~-~~~~~~~~~va~~i~~ 217 (263)
T PRK09072 140 T-FGSIGYPGYASYCASKFALRGFSEALRRELADTGVRVLYLAPRATRTAMNSEAVQALNRAL-GNAMDDPEDVAAAVLQ 217 (263)
T ss_pred h-hhCcCCCCccHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccccchhhhcccccccc-cCCCCCHHHHHHHHHH
Confidence 7 5667788899999999999999999999999999999999999999998643211111111 1122467888887776
Q ss_pred cccc
Q 010380 413 RIRV 416 (512)
Q Consensus 413 r~~~ 416 (512)
.+..
T Consensus 218 ~~~~ 221 (263)
T PRK09072 218 AIEK 221 (263)
T ss_pred HHhC
Confidence 5543
|
|
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-30 Score=259.64 Aligned_cols=194 Identities=27% Similarity=0.399 Sum_probs=173.7
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
++++|++|||||++|||+++|++|+++|++|++++|+.+.+++..+++.. .+.++.++.+|++
T Consensus 3 ~~~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-----------------~~~~~~~~~~D~~ 65 (287)
T PRK06194 3 DFAGKVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRA-----------------QGAEVLGVRTDVS 65 (287)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHh-----------------cCCeEEEEECCCC
Confidence 46789999999999999999999999999999999998887777666643 2457888999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCC-----CeEE
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKG-----GHIF 328 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~-----g~IV 328 (512)
|.++++++++.+.+.++++|+||||||... ..++.+.+.++|++.+++|+.|+++++++++|.|.++... |+||
T Consensus 66 d~~~~~~~~~~~~~~~g~id~vi~~Ag~~~-~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~~~~~g~iv 144 (287)
T PRK06194 66 DAAQVEALADAALERFGAVHLLFNNAGVGA-GGLVWENSLADWEWVLGVNLWGVIHGVRAFTPLMLAAAEKDPAYEGHIV 144 (287)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCC-CCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCCeEEE
Confidence 999999999999999999999999999976 5778889999999999999999999999999999887443 7999
Q ss_pred eecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhC--CCCeEEEEEeCCcccCCcccC
Q 010380 329 NMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESK--RSKVGVHTASPGMVLTDLLLS 386 (512)
Q Consensus 329 ~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~--~~GIrVn~V~PG~V~T~~~~~ 386 (512)
++||. ++..+.++.+.|++||++++.|+++++.|+. ..+|++++++||+|+|++...
T Consensus 145 ~~sS~-~~~~~~~~~~~Y~~sK~a~~~~~~~l~~e~~~~~~~irv~~v~pg~i~t~~~~~ 203 (287)
T PRK06194 145 NTASM-AGLLAPPAMGIYNVSKHAVVSLTETLYQDLSLVTDQVGASVLCPYFVPTGIWQS 203 (287)
T ss_pred EeCCh-hhccCCCCCcchHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEeCcccCccccc
Confidence 99987 5677778889999999999999999999987 457999999999999998754
|
|
| >PRK12935 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-30 Score=255.54 Aligned_cols=227 Identities=24% Similarity=0.386 Sum_probs=187.7
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEc-ChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASR-SSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R-~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
++++|+++||||++|||.++|++|+++|++|+++.+ +++..++..+++.+ .+.++.++.+|+
T Consensus 3 ~~~~~~~lItG~s~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~l~~-----------------~~~~~~~~~~D~ 65 (247)
T PRK12935 3 QLNGKVAIVTGGAKGIGKAITVALAQEGAKVVINYNSSKEAAENLVNELGK-----------------EGHDVYAVQADV 65 (247)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEcCCcHHHHHHHHHHHHh-----------------cCCeEEEEECCC
Confidence 367899999999999999999999999999987654 45555555555543 345789999999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|++++.++++++.+.++++|+||||||... ...+.+.+.+++++++++|+.+++.++++++|.|.++ +.++||++||
T Consensus 66 ~~~~~~~~~~~~~~~~~~~id~vi~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~iv~~sS 143 (247)
T PRK12935 66 SKVEDANRLVEEAVNHFGKVDILVNNAGITR-DRTFKKLNREDWERVIDVNLSSVFNTTSAVLPYITEA-EEGRIISISS 143 (247)
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCCCC-CCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCcEEEEEcc
Confidence 9999999999999999999999999999876 4667788999999999999999999999999999876 4679999998
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhcc
Q 010380 333 AGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVP 412 (512)
Q Consensus 333 ~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~ 412 (512)
. .+..+.++...|++||+|+++++++++.|+.+.||+++.|+||+|+|++......... .........+
T Consensus 144 ~-~~~~~~~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~~~~~~~~----------~~~~~~~~~~ 212 (247)
T PRK12935 144 I-IGQAGGFGQTNYSAAKAGMLGFTKSLALELAKTNVTVNAICPGFIDTEMVAEVPEEVR----------QKIVAKIPKK 212 (247)
T ss_pred h-hhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHcCcEEEEEEeCCCcChhhhhccHHHH----------HHHHHhCCCC
Confidence 7 5666778889999999999999999999999999999999999999998643211100 1111222345
Q ss_pred ccccchhhhhhhhhcCCh
Q 010380 413 RIRVVKGSGKAINYLTPP 430 (512)
Q Consensus 413 r~~~~~~va~~v~~L~s~ 430 (512)
++..|+|++.++.|++.+
T Consensus 213 ~~~~~edva~~~~~~~~~ 230 (247)
T PRK12935 213 RFGQADEIAKGVVYLCRD 230 (247)
T ss_pred CCcCHHHHHHHHHHHcCc
Confidence 677899999999998865
|
|
| >PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=255.25 Aligned_cols=234 Identities=22% Similarity=0.333 Sum_probs=191.9
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
++++|+++||||++|||++++++|+++|+.|++.+|+.+++++..+++ +.++.++.+|++
T Consensus 3 ~~~~~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~D~~ 62 (245)
T PRK12936 3 DLSGRKALVTGASGGIGEEIARLLHAQGAIVGLHGTRVEKLEALAAEL--------------------GERVKIFPANLS 62 (245)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh--------------------CCceEEEEccCC
Confidence 567899999999999999999999999999999999887766544322 246778999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
|.++++++++++.+.++++|++|||||... ..++.+.+.+++++++++|+.+++++++++.+.|.++ +.++||++||.
T Consensus 63 ~~~~~~~~~~~~~~~~~~id~vi~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~iv~~sS~ 140 (245)
T PRK12936 63 DRDEVKALGQKAEADLEGVDILVNNAGITK-DGLFVRMSDEDWDSVLEVNLTATFRLTRELTHPMMRR-RYGRIINITSV 140 (245)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCC-CCccccCCHHHHHHHHhhccHHHHHHHHHHHHHHHHh-CCCEEEEECCH
Confidence 999999999999999999999999999876 4677788999999999999999999999999988765 46899999987
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhccc
Q 010380 334 GSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPR 413 (512)
Q Consensus 334 ~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~r 413 (512)
.+..+.+....|+++|+|+.++++.++.++.+.||++++|+||+++|++.......... ......+..+
T Consensus 141 -~~~~~~~~~~~Y~~sk~a~~~~~~~la~~~~~~~i~v~~i~pg~~~t~~~~~~~~~~~~----------~~~~~~~~~~ 209 (245)
T PRK12936 141 -VGVTGNPGQANYCASKAGMIGFSKSLAQEIATRNVTVNCVAPGFIESAMTGKLNDKQKE----------AIMGAIPMKR 209 (245)
T ss_pred -HhCcCCCCCcchHHHHHHHHHHHHHHHHHhhHhCeEEEEEEECcCcCchhcccChHHHH----------HHhcCCCCCC
Confidence 56677788899999999999999999999999999999999999999986432111000 0011234566
Q ss_pred cccchhhhhhhhhcCChHHHHHHHHHH
Q 010380 414 IRVVKGSGKAINYLTPPRILLALVTAW 440 (512)
Q Consensus 414 ~~~~~~va~~v~~L~s~~~~~~~~~~~ 440 (512)
...|++++..+.||+++...+.++..+
T Consensus 210 ~~~~~~ia~~~~~l~~~~~~~~~G~~~ 236 (245)
T PRK12936 210 MGTGAEVASAVAYLASSEAAYVTGQTI 236 (245)
T ss_pred CcCHHHHHHHHHHHcCccccCcCCCEE
Confidence 778899999999988765433333333
|
|
| >PRK06123 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-30 Score=254.94 Aligned_cols=229 Identities=26% Similarity=0.388 Sum_probs=183.5
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEEc-ChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCCh
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSGDRVVVASR-SSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEP 255 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R-~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~ 255 (512)
+|++|||||++|||.++|++|+++|++|+++.+ +++..++..+++.. .+.++.++.||++|.
T Consensus 2 ~~~~lVtG~~~~iG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~l~~-----------------~~~~~~~~~~Dl~~~ 64 (248)
T PRK06123 2 RKVMIITGASRGIGAATALLAAERGYAVCLNYLRNRDAAEAVVQAIRR-----------------QGGEALAVAADVADE 64 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCeEEEecCCCHHHHHHHHHHHHh-----------------CCCcEEEEEeccCCH
Confidence 578999999999999999999999999988874 44555544444433 235678899999999
Q ss_pred hhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCC--CCCeEEeecCC
Q 010380 256 ADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQP--KGGHIFNMDGA 333 (512)
Q Consensus 256 ~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~--~~g~IV~vSS~ 333 (512)
+++.++++++.++++++|+||||||...+..++.+.+.++|++++++|+.+++.+++.+++.|.++. ++|+||++||.
T Consensus 65 ~~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~g~iv~~sS~ 144 (248)
T PRK06123 65 ADVLRLFEAVDRELGRLDALVNNAGILEAQMRLEQMDAARLTRIFATNVVGSFLCAREAVKRMSTRHGGRGGAIVNVSSM 144 (248)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCeEEEEECch
Confidence 9999999999999999999999999875345677889999999999999999999999999997642 35789999987
Q ss_pred CCCCCCCCC-cchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhcc
Q 010380 334 GSGGSSTPL-TAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVP 412 (512)
Q Consensus 334 ~a~~~~~p~-~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~ 412 (512)
++..+.++ ...|++||+++++|+++++.|+.+.||+|++|+||.|.|++...... ..... ......+++
T Consensus 145 -~~~~~~~~~~~~Y~~sKaa~~~~~~~la~~~~~~~i~v~~i~pg~v~~~~~~~~~~---~~~~~------~~~~~~p~~ 214 (248)
T PRK06123 145 -AARLGSPGEYIDYAASKGAIDTMTIGLAKEVAAEGIRVNAVRPGVIYTEIHASGGE---PGRVD------RVKAGIPMG 214 (248)
T ss_pred -hhcCCCCCCccchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccCchhhccCC---HHHHH------HHHhcCCCC
Confidence 45555555 36799999999999999999999999999999999999997532111 00000 011123566
Q ss_pred ccccchhhhhhhhhcCChHH
Q 010380 413 RIRVVKGSGKAINYLTPPRI 432 (512)
Q Consensus 413 r~~~~~~va~~v~~L~s~~~ 432 (512)
+...|+++++++.|+++...
T Consensus 215 ~~~~~~d~a~~~~~l~~~~~ 234 (248)
T PRK06123 215 RGGTAEEVARAILWLLSDEA 234 (248)
T ss_pred CCcCHHHHHHHHHHHhCccc
Confidence 67788999999999887643
|
|
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-30 Score=254.90 Aligned_cols=248 Identities=27% Similarity=0.382 Sum_probs=201.4
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCC
Q 010380 175 AGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCE 254 (512)
Q Consensus 175 l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd 254 (512)
+++|+++||||+++||+++|++|+++|++|++++|+.++.++..+++.. .+.++.++.||++|
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~-----------------~~~~~~~~~~Dl~~ 64 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQK-----------------AGGKAIGVAMDVTD 64 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHh-----------------cCCcEEEEEcCCCC
Confidence 5789999999999999999999999999999999999888777666654 34678899999999
Q ss_pred hhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCC
Q 010380 255 PADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAG 334 (512)
Q Consensus 255 ~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~ 334 (512)
+++++++++++.+.++++|+||||||... ..++.+.+.++++..+++|+.+++++++.++|.|+++ +.++||++||.
T Consensus 65 ~~~~~~~~~~~~~~~~~~d~vi~~a~~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~iv~iss~- 141 (258)
T PRK12429 65 EEAINAGIDYAVETFGGVDILVNNAGIQH-VAPIEDFPTEKWKKMIAIMLDGAFLTTKAALPIMKAQ-GGGRIINMASV- 141 (258)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCC-CCChhhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhc-CCeEEEEEcch-
Confidence 99999999999999999999999999876 5678888999999999999999999999999999886 57899999987
Q ss_pred CCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHH-----
Q 010380 335 SGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVART----- 409 (512)
Q Consensus 335 a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~----- 409 (512)
.+..+.++...|+++|++++.+++.++.|+.+.||+|++++||++.||+........ ......+++.....
T Consensus 142 ~~~~~~~~~~~y~~~k~a~~~~~~~l~~~~~~~~i~v~~~~pg~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 217 (258)
T PRK12429 142 HGLVGSAGKAAYVSAKHGLIGLTKVVALEGATHGVTVNAICPGYVDTPLVRKQIPDL----AKERGISEEEVLEDVLLPL 217 (258)
T ss_pred hhccCCCCcchhHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCcchhhhhhhhhh----ccccCCChHHHHHHHHhcc
Confidence 566788899999999999999999999999999999999999999999864321110 00001122222211
Q ss_pred -hccccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 410 -LVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 410 -~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
..+++..++|+++.+.+++.+.....++..+..+|+|
T Consensus 218 ~~~~~~~~~~d~a~~~~~l~~~~~~~~~g~~~~~~~g~ 255 (258)
T PRK12429 218 VPQKRFTTVEEIADYALFLASFAAKGVTGQAWVVDGGW 255 (258)
T ss_pred CCccccCCHHHHHHHHHHHcCccccCccCCeEEeCCCE
Confidence 2345677889999998888765433344455555544
|
|
| >PRK06198 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-30 Score=257.01 Aligned_cols=247 Identities=22% Similarity=0.284 Sum_probs=197.8
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDR-VVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~-Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
.+++|+++||||++|||..++++|+++|++ |++++|+.++.+...+++.+ .+.++.++.+|+
T Consensus 3 ~~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~-----------------~~~~~~~~~~D~ 65 (260)
T PRK06198 3 RLDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEA-----------------LGAKAVFVQADL 65 (260)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHh-----------------cCCeEEEEEccC
Confidence 467899999999999999999999999998 99999998877766666633 345788899999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|++++.++++.+.++++++|++|||||... ..++.+.+.++++.++++|+.+++.+++.++|.|.++...++||++||
T Consensus 66 ~~~~~~~~~~~~~~~~~g~id~li~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~ss 144 (260)
T PRK06198 66 SDVEDCRRVVAAADEAFGRLDALVNAAGLTD-RGTILDTSPELFDRHFAVNVRAPFFLMQEAIKLMRRRKAEGTIVNIGS 144 (260)
T ss_pred CCHHHHHHHHHHHHHHhCCCCEEEECCCcCC-CCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECC
Confidence 9999999999999999999999999999876 567778899999999999999999999999999987644689999998
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhcc
Q 010380 333 AGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVP 412 (512)
Q Consensus 333 ~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~ 412 (512)
. .+..+.++...|+++|+++++|+++++.|+...||+|++|+||++.|++..............+. .......++.
T Consensus 145 ~-~~~~~~~~~~~Y~~sK~a~~~~~~~~a~e~~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 220 (260)
T PRK06198 145 M-SAHGGQPFLAAYCASKGALATLTRNAAYALLRNRIRVNGLNIGWMATEGEDRIQREFHGAPDDWL---EKAAATQPFG 220 (260)
T ss_pred c-ccccCCCCcchhHHHHHHHHHHHHHHHHHhcccCeEEEEEeeccccCcchhhhhhhccCCChHHH---HHHhccCCcc
Confidence 7 56667788899999999999999999999999999999999999999974211000000000000 0111123456
Q ss_pred ccccchhhhhhhhhcCChHHHHHHHHHHhc
Q 010380 413 RIRVVKGSGKAINYLTPPRILLALVTAWLR 442 (512)
Q Consensus 413 r~~~~~~va~~v~~L~s~~~~~~~~~~~~~ 442 (512)
+...++++++.+.+++++.....++..+..
T Consensus 221 ~~~~~~~~a~~~~~l~~~~~~~~~G~~~~~ 250 (260)
T PRK06198 221 RLLDPDEVARAVAFLLSDESGLMTGSVIDF 250 (260)
T ss_pred CCcCHHHHHHHHHHHcChhhCCccCceEeE
Confidence 677899999999999886654444444433
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-30 Score=252.92 Aligned_cols=190 Identities=26% Similarity=0.388 Sum_probs=171.9
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCCh
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEP 255 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~ 255 (512)
++|+++||||++|||++++++|+++|++|++++|++++.+++.+++.+ .+.++.++.+|++|+
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-----------------~~~~~~~~~~D~~~~ 67 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRS-----------------TGVKAAAYSIDLSNP 67 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-----------------CCCcEEEEEccCCCH
Confidence 468999999999999999999999999999999998877766666543 345788899999999
Q ss_pred hhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCC
Q 010380 256 ADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGS 335 (512)
Q Consensus 256 ~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a 335 (512)
+++.++++.+.+.++++|+||||||... ..++.+.+.+++++++++|+.+++.+++.++|.|.++ +.++||++||. .
T Consensus 68 ~~~~~~~~~~~~~~~~id~lv~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~iv~isS~-~ 144 (241)
T PRK07454 68 EAIAPGIAELLEQFGCPDVLINNAGMAY-TGPLLEMPLSDWQWVIQLNLTSVFQCCSAVLPGMRAR-GGGLIINVSSI-A 144 (241)
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCccC-CCchhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhc-CCcEEEEEccH-H
Confidence 9999999999999999999999999876 5677888999999999999999999999999999876 56899999987 5
Q ss_pred CCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCccc
Q 010380 336 GGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLL 385 (512)
Q Consensus 336 ~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~ 385 (512)
+..+.++...|+++|++++.++++++.|+.+.||++++|+||+++|++..
T Consensus 145 ~~~~~~~~~~Y~~sK~~~~~~~~~~a~e~~~~gi~v~~i~pg~i~t~~~~ 194 (241)
T PRK07454 145 ARNAFPQWGAYCVSKAALAAFTKCLAEEERSHGIRVCTITLGAVNTPLWD 194 (241)
T ss_pred hCcCCCCccHHHHHHHHHHHHHHHHHHHhhhhCCEEEEEecCcccCCccc
Confidence 66777888999999999999999999999999999999999999999864
|
|
| >PRK06179 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-30 Score=258.80 Aligned_cols=183 Identities=25% Similarity=0.351 Sum_probs=166.8
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCCh
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEP 255 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~ 255 (512)
++++++||||+||||+++|++|+++|++|++++|+.++.+. ..+++++.||++|+
T Consensus 3 ~~~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~-------------------------~~~~~~~~~D~~d~ 57 (270)
T PRK06179 3 NSKVALVTGASSGIGRATAEKLARAGYRVFGTSRNPARAAP-------------------------IPGVELLELDVTDD 57 (270)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCChhhccc-------------------------cCCCeeEEeecCCH
Confidence 56899999999999999999999999999999998654321 13567899999999
Q ss_pred hhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCC
Q 010380 256 ADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGS 335 (512)
Q Consensus 256 ~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a 335 (512)
++++++++.+.+.++++|+||||||... ..++.+.+.+++++++++|+.|++.+++.++|.|+++ +.++||++||. .
T Consensus 58 ~~~~~~~~~~~~~~g~~d~li~~ag~~~-~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~-~~~~iv~isS~-~ 134 (270)
T PRK06179 58 ASVQAAVDEVIARAGRIDVLVNNAGVGL-AGAAEESSIAQAQALFDTNVFGILRMTRAVLPHMRAQ-GSGRIINISSV-L 134 (270)
T ss_pred HHHHHHHHHHHHhCCCCCEEEECCCCCC-CcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCceEEEECCc-c
Confidence 9999999999999999999999999976 5778889999999999999999999999999999876 57899999997 5
Q ss_pred CCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccC
Q 010380 336 GGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLS 386 (512)
Q Consensus 336 ~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~ 386 (512)
+..+.|....|++||++++.|+++++.|+.+.||+|++|+||+++|++...
T Consensus 135 ~~~~~~~~~~Y~~sK~a~~~~~~~l~~el~~~gi~v~~v~pg~~~t~~~~~ 185 (270)
T PRK06179 135 GFLPAPYMALYAASKHAVEGYSESLDHEVRQFGIRVSLVEPAYTKTNFDAN 185 (270)
T ss_pred ccCCCCCccHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEeCCCcccccccc
Confidence 677888899999999999999999999999999999999999999998754
|
|
| >PRK07069 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-30 Score=256.89 Aligned_cols=241 Identities=19% Similarity=0.278 Sum_probs=191.6
Q ss_pred EEEECCCChHHHHHHHHHHHCCCEEEEEEcC-hhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhhH
Q 010380 180 VVITGSTRGLGKALAREFLLSGDRVVVASRS-SESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPADV 258 (512)
Q Consensus 180 vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~-~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~sv 258 (512)
++||||++|||+++++.|+++|++|++++|+ .+.+++..+++.+.. ....+..+.+|++|++++
T Consensus 2 ilVtG~~~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~D~~~~~~~ 66 (251)
T PRK07069 2 AFITGAAGGLGRAIARRMAEQGAKVFLTDINDAAGLDAFAAEINAAH---------------GEGVAFAAVQDVTDEAQW 66 (251)
T ss_pred EEEECCCChHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcC---------------CCceEEEEEeecCCHHHH
Confidence 7999999999999999999999999999998 666666655554310 113456789999999999
Q ss_pred HHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCC
Q 010380 259 QKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGS 338 (512)
Q Consensus 259 ~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~~~ 338 (512)
+++++++.+.++++|++|||||... ..++.+.+.+++++++++|+.+++.+++.++|.|+++ +.++||++||. .+..
T Consensus 67 ~~~~~~~~~~~~~id~vi~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~ii~~ss~-~~~~ 143 (251)
T PRK07069 67 QALLAQAADAMGGLSVLVNNAGVGS-FGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRAS-QPASIVNISSV-AAFK 143 (251)
T ss_pred HHHHHHHHHHcCCccEEEECCCcCC-CCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhc-CCcEEEEecCh-hhcc
Confidence 9999999999999999999999876 5778889999999999999999999999999999876 46899999987 5667
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHHHhCCCC--eEEEEEeCCcccCCcccCCcchhh-hhhhhhhcCCHHHHHHHhccccc
Q 010380 339 STPLTAVYGSTKCGLRQLQASLFKESKRSK--VGVHTASPGMVLTDLLLSGSTIQN-KQMFNIICELPETVARTLVPRIR 415 (512)
Q Consensus 339 ~~p~~~~Y~aSKaAl~~l~~sLa~El~~~G--IrVn~V~PG~V~T~~~~~~~~~~~-~~~~~~~~~~pe~vA~~~l~r~~ 415 (512)
+.++...|+++|++++.|+++++.|+.+++ |+|++|+||+++|++......... .... +......+..++.
T Consensus 144 ~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 217 (251)
T PRK07069 144 AEPDYTAYNASKAAVASLTKSIALDCARRGLDVRCNSIHPTFIRTGIVDPIFQRLGEEEAT------RKLARGVPLGRLG 217 (251)
T ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhcccCCcEEEEEEeecccCCcchhHHhhhccchhHH------HHHhccCCCCCCc
Confidence 778899999999999999999999998665 999999999999998643111000 0000 0111123456778
Q ss_pred cchhhhhhhhhcCChHHHHHHHHHHhccC
Q 010380 416 VVKGSGKAINYLTPPRILLALVTAWLRRG 444 (512)
Q Consensus 416 ~~~~va~~v~~L~s~~~~~~~~~~~~~~g 444 (512)
.|+++++.+.||+++...+.++.....+|
T Consensus 218 ~~~~va~~~~~l~~~~~~~~~g~~i~~~~ 246 (251)
T PRK07069 218 EPDDVAHAVLYLASDESRFVTGAELVIDG 246 (251)
T ss_pred CHHHHHHHHHHHcCccccCccCCEEEECC
Confidence 89999999999988765444444333333
|
|
| >PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-30 Score=252.73 Aligned_cols=227 Identities=22% Similarity=0.355 Sum_probs=188.4
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
++++++++||||++|||.++|+.|+++|++|++++|+.+++++..+++.. .+.++.++.+|++
T Consensus 2 ~~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~-----------------~~~~~~~~~~D~~ 64 (253)
T PRK08217 2 DLKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGA-----------------LGTEVRGYAANVT 64 (253)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-----------------cCCceEEEEcCCC
Confidence 57899999999999999999999999999999999999888777776654 3467888999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCC--------C-cCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKP--------L-LQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKG 324 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~--------~-~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~ 324 (512)
|+++++++++.+.+.++++|++|||||... ... + .+.+.++++.++++|+.+++.+.+.++|.|.++...
T Consensus 65 ~~~~~~~~~~~~~~~~~~id~vi~~ag~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~~ 143 (253)
T PRK08217 65 DEEDVEATFAQIAEDFGQLNGLINNAGILR-DGLLVKAKDGKVTSKMSLEQFQSVIDVNLTGVFLCGREAAAKMIESGSK 143 (253)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCccC-cCcccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999888899999999999754 221 2 677889999999999999999999999999876556
Q ss_pred CeEEeecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHH
Q 010380 325 GHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPE 404 (512)
Q Consensus 325 g~IV~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe 404 (512)
+.||++||. ...+.++...|++||+|+++++++|+.|+.+.||++++++||+++|++.....+. .. ..
T Consensus 144 ~~iv~~ss~--~~~~~~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~pg~v~t~~~~~~~~~----~~------~~ 211 (253)
T PRK08217 144 GVIINISSI--ARAGNMGQTNYSASKAGVAAMTVTWAKELARYGIRVAAIAPGVIETEMTAAMKPE----AL------ER 211 (253)
T ss_pred eEEEEEccc--cccCCCCCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeCCCcCccccccCHH----HH------HH
Confidence 789999886 3356678899999999999999999999999999999999999999986432111 00 01
Q ss_pred HHHHHhccccccchhhhhhhhhcCCh
Q 010380 405 TVARTLVPRIRVVKGSGKAINYLTPP 430 (512)
Q Consensus 405 ~vA~~~l~r~~~~~~va~~v~~L~s~ 430 (512)
.....+.+++..++++++.+.||+..
T Consensus 212 ~~~~~~~~~~~~~~~~a~~~~~l~~~ 237 (253)
T PRK08217 212 LEKMIPVGRLGEPEEIAHTVRFIIEN 237 (253)
T ss_pred HHhcCCcCCCcCHHHHHHHHHHHHcC
Confidence 11223456677889999999998854
|
|
| >KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-30 Score=256.71 Aligned_cols=229 Identities=27% Similarity=0.334 Sum_probs=191.5
Q ss_pred cCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEcc
Q 010380 172 HCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACD 251 (512)
Q Consensus 172 ~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~D 251 (512)
..+-.|++++||||+.|||++.|++||++|.+|++++|++++++.+.+||.+.+ +.++.++.+|
T Consensus 44 ~~~~~g~WAVVTGaTDGIGKayA~eLAkrG~nvvLIsRt~~KL~~v~kEI~~~~----------------~vev~~i~~D 107 (312)
T KOG1014|consen 44 LKEKLGSWAVVTGATDGIGKAYARELAKRGFNVVLISRTQEKLEAVAKEIEEKY----------------KVEVRIIAID 107 (312)
T ss_pred hHHhcCCEEEEECCCCcchHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHHh----------------CcEEEEEEEe
Confidence 333446999999999999999999999999999999999999999999998863 4689999999
Q ss_pred CCChhhHHHHHHHHHHHcCCCcccccccccCC-CCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEee
Q 010380 252 VCEPADVQKLSNFAVNEFGSIDIWINNAGTNK-GFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNM 330 (512)
Q Consensus 252 ltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~-~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~v 330 (512)
.++.+.+-+-+.+..+. .+|-+||||+|... .+..+.+.+.+.++.++.+|..++..+++.++|.|.++ ++|.|||+
T Consensus 108 ft~~~~~ye~i~~~l~~-~~VgILVNNvG~~~~~P~~f~~~~~~~~~~ii~vN~~~~~~~t~~ilp~M~~r-~~G~Ivni 185 (312)
T KOG1014|consen 108 FTKGDEVYEKLLEKLAG-LDVGILVNNVGMSYDYPESFLKYPEGELQNIINVNILSVTLLTQLILPGMVER-KKGIIVNI 185 (312)
T ss_pred cCCCchhHHHHHHHhcC-CceEEEEecccccCCCcHHHHhCchhhhhheeEEecchHHHHHHHhhhhhhcC-CCceEEEe
Confidence 99988733322222221 36779999999976 23457788888999999999999999999999999987 78999999
Q ss_pred cCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHh
Q 010380 331 DGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTL 410 (512)
Q Consensus 331 SS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~ 410 (512)
+|. ++..+.|.++.|++||+.+..|+++|+.|+..+||.|.++.|..|.|+|..... ...+..+|+..|+..
T Consensus 186 gS~-ag~~p~p~~s~ysasK~~v~~~S~~L~~Ey~~~gI~Vq~v~p~~VaTkm~~~~~-------~sl~~ps~~tfaksa 257 (312)
T KOG1014|consen 186 GSF-AGLIPTPLLSVYSASKAFVDFFSRCLQKEYESKGIFVQSVIPYLVATKMAKYRK-------PSLFVPSPETFAKSA 257 (312)
T ss_pred ccc-cccccChhHHHHHHHHHHHHHHHHHHHHHHHhcCeEEEEeehhheeccccccCC-------CCCcCcCHHHHHHHH
Confidence 998 799999999999999999999999999999999999999999999999975433 234556899999998
Q ss_pred ccccccchhhhhhhhhcCC
Q 010380 411 VPRIRVVKGSGKAINYLTP 429 (512)
Q Consensus 411 l~r~~~~~~va~~v~~L~s 429 (512)
+.-++... .+..|+..
T Consensus 258 l~tiG~~~---~TtGy~~H 273 (312)
T KOG1014|consen 258 LNTIGNAS---ETTGYLNH 273 (312)
T ss_pred HhhcCCcc---cCCCccch
Confidence 87766333 33345444
|
|
| >PRK12824 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-30 Score=252.79 Aligned_cols=238 Identities=22% Similarity=0.301 Sum_probs=191.8
Q ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhh
Q 010380 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPAD 257 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~s 257 (512)
|+++||||++|||.++|++|+++|++|++++|+... . .+++.+.... .+.++.++.+|++|+++
T Consensus 3 k~vlItG~s~~iG~~la~~l~~~g~~vi~~~r~~~~--~-~~~~~~~~~~-------------~~~~~~~~~~D~~~~~~ 66 (245)
T PRK12824 3 KIALVTGAKRGIGSAIARELLNDGYRVIATYFSGND--C-AKDWFEEYGF-------------TEDQVRLKELDVTDTEE 66 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCcHH--H-HHHHHHHhhc-------------cCCeEEEEEcCCCCHHH
Confidence 689999999999999999999999999999998541 1 1222111110 24578899999999999
Q ss_pred HHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCCC
Q 010380 258 VQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGG 337 (512)
Q Consensus 258 v~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~~ 337 (512)
+.++++.+.++++++|++|||||... ..++.+.+.++|++++++|+.+++++++.++|.|+++ +.++||++||. .+.
T Consensus 67 v~~~~~~~~~~~~~id~vi~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~iv~iss~-~~~ 143 (245)
T PRK12824 67 CAEALAEIEEEEGPVDILVNNAGITR-DSVFKRMSHQEWNDVINTNLNSVFNVTQPLFAAMCEQ-GYGRIINISSV-NGL 143 (245)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCC-CCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHh-CCeEEEEECCh-hhc
Confidence 99999999999999999999999876 5678889999999999999999999999999999876 56899999987 566
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhccccccc
Q 010380 338 SSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPRIRVV 417 (512)
Q Consensus 338 ~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~r~~~~ 417 (512)
.+.++...|++||+|+++|+++++.|+.+.||++++++||++.|++...... ... ....+..+++....+
T Consensus 144 ~~~~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~----~~~------~~~~~~~~~~~~~~~ 213 (245)
T PRK12824 144 KGQFGQTNYSAAKAGMIGFTKALASEGARYGITVNCIAPGYIATPMVEQMGP----EVL------QSIVNQIPMKRLGTP 213 (245)
T ss_pred cCCCCChHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEEEcccCCcchhhcCH----HHH------HHHHhcCCCCCCCCH
Confidence 7788899999999999999999999999999999999999999998643211 110 112233456677788
Q ss_pred hhhhhhhhhcCChHHHHHHHHHHhccC
Q 010380 418 KGSGKAINYLTPPRILLALVTAWLRRG 444 (512)
Q Consensus 418 ~~va~~v~~L~s~~~~~~~~~~~~~~g 444 (512)
+++++.+.||+.+...+.++..+..+|
T Consensus 214 ~~va~~~~~l~~~~~~~~~G~~~~~~~ 240 (245)
T PRK12824 214 EEIAAAVAFLVSEAAGFITGETISING 240 (245)
T ss_pred HHHHHHHHHHcCccccCccCcEEEECC
Confidence 999999999997654444444444333
|
|
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6e-30 Score=251.57 Aligned_cols=227 Identities=23% Similarity=0.380 Sum_probs=184.9
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
++++|+++||||++|||.+++++|+++|++|++++|+++..+.+.+++.+ .+.++.++.+|++
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~-----------------~~~~~~~~~~Dl~ 65 (250)
T PRK07774 3 RFDDKVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVA-----------------DGGTAIAVQVDVS 65 (250)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-----------------cCCcEEEEEcCCC
Confidence 46789999999999999999999999999999999998777666666543 2346778999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCC--CCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeec
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKG--FKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD 331 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~--~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vS 331 (512)
|.++++++++++.+.++++|+||||||+... ..++.+.+.+++++++++|+.++++++++++|.|.+. +.++||++|
T Consensus 66 ~~~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~iv~~s 144 (250)
T PRK07774 66 DPDSAKAMADATVSAFGGIDYLVNNAAIYGGMKLDLLITVPWDYYKKFMSVNLDGALVCTRAVYKHMAKR-GGGAIVNQS 144 (250)
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCCCcCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHh-CCcEEEEEe
Confidence 9999999999999999999999999998531 3456788899999999999999999999999999876 468999999
Q ss_pred CCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhc
Q 010380 332 GAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLV 411 (512)
Q Consensus 332 S~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l 411 (512)
|. ... ++.+.|++||++++.+++++++|+.+.||++++++||.++|++........ . ..........
T Consensus 145 S~-~~~---~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~---~------~~~~~~~~~~ 211 (250)
T PRK07774 145 ST-AAW---LYSNFYGLAKVGLNGLTQQLARELGGMNIRVNAIAPGPIDTEATRTVTPKE---F------VADMVKGIPL 211 (250)
T ss_pred cc-ccc---CCccccHHHHHHHHHHHHHHHHHhCccCeEEEEEecCcccCccccccCCHH---H------HHHHHhcCCC
Confidence 87 332 345789999999999999999999999999999999999999864321110 0 0111222233
Q ss_pred cccccchhhhhhhhhcCChH
Q 010380 412 PRIRVVKGSGKAINYLTPPR 431 (512)
Q Consensus 412 ~r~~~~~~va~~v~~L~s~~ 431 (512)
.+...|++++..+.+++.+.
T Consensus 212 ~~~~~~~d~a~~~~~~~~~~ 231 (250)
T PRK07774 212 SRMGTPEDLVGMCLFLLSDE 231 (250)
T ss_pred CCCcCHHHHHHHHHHHhChh
Confidence 44567888888888877653
|
|
| >PRK08263 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7e-30 Score=255.82 Aligned_cols=228 Identities=25% Similarity=0.364 Sum_probs=185.6
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCCh
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEP 255 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~ 255 (512)
.+|+++||||++|||++++++|+++|++|++++|+.+.+++..+.+ +.++.++++|++|+
T Consensus 2 ~~k~vlItGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~--------------------~~~~~~~~~D~~~~ 61 (275)
T PRK08263 2 MEKVWFITGASRGFGRAWTEAALERGDRVVATARDTATLADLAEKY--------------------GDRLLPLALDVTDR 61 (275)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc--------------------cCCeeEEEccCCCH
Confidence 4689999999999999999999999999999999987765443321 23577899999999
Q ss_pred hhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCC
Q 010380 256 ADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGS 335 (512)
Q Consensus 256 ~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a 335 (512)
++++++++.+.+.++++|++|||||... ..++.+.+.+++++++++|+.+++.+++.++|.|+++ +.++||++||. +
T Consensus 62 ~~~~~~~~~~~~~~~~~d~vi~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~iv~vsS~-~ 138 (275)
T PRK08263 62 AAVFAAVETAVEHFGRLDIVVNNAGYGL-FGMIEEVTESEARAQIDTNFFGALWVTQAVLPYLREQ-RSGHIIQISSI-G 138 (275)
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCCcc-ccccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCCEEEEEcCh-h
Confidence 9999999999999999999999999876 6788899999999999999999999999999999876 46799999987 5
Q ss_pred CCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcch--hhhhhhhhhcCCHHHH-HHHhcc
Q 010380 336 GGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTI--QNKQMFNIICELPETV-ARTLVP 412 (512)
Q Consensus 336 ~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~--~~~~~~~~~~~~pe~v-A~~~l~ 412 (512)
+..+.+....|++||++++.+++.++.|+.+.||+|++|+||+++|++....... ........ .+.. ......
T Consensus 139 ~~~~~~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~Pg~~~t~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 214 (275)
T PRK08263 139 GISAFPMSGIYHASKWALEGMSEALAQEVAEFGIKVTLVEPGGYSTDWAGTSAKRATPLDAYDTL----REELAEQWSER 214 (275)
T ss_pred hcCCCCCccHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEecCCccCCccccccccCCCchhhhhH----HHHHHHHHHhc
Confidence 6778888999999999999999999999999999999999999999987422110 00000000 0111 111233
Q ss_pred cc-ccchhhhhhhhhcCCh
Q 010380 413 RI-RVVKGSGKAINYLTPP 430 (512)
Q Consensus 413 r~-~~~~~va~~v~~L~s~ 430 (512)
++ ..|+++++.+.+++..
T Consensus 215 ~~~~~p~dva~~~~~l~~~ 233 (275)
T PRK08263 215 SVDGDPEAAAEALLKLVDA 233 (275)
T ss_pred cCCCCHHHHHHHHHHHHcC
Confidence 44 6788888888777764
|
|
| >TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.2e-30 Score=249.74 Aligned_cols=235 Identities=22% Similarity=0.303 Sum_probs=191.9
Q ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEEc-ChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChh
Q 010380 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASR-SSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPA 256 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R-~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~ 256 (512)
|+++||||++|||+++|++|+++|++|++++| +++..++..+++.. .+.++.++.+|++|++
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~-----------------~~~~~~~~~~D~~~~~ 63 (242)
T TIGR01829 1 RIALVTGGMGGIGTAICQRLAKDGYRVAANCGPNEERAEAWLQEQGA-----------------LGFDFRVVEGDVSSFE 63 (242)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHh-----------------hCCceEEEEecCCCHH
Confidence 68999999999999999999999999999988 55555544444332 2457889999999999
Q ss_pred hHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCC
Q 010380 257 DVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSG 336 (512)
Q Consensus 257 sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~ 336 (512)
++.++++++.+.++++|+||||||... ..++.+.+.+++++.+++|+.+++.+++.++|.|++. +.++||++||. .+
T Consensus 64 ~~~~~~~~~~~~~~~id~vi~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~iv~iss~-~~ 140 (242)
T TIGR01829 64 SCKAAVAKVEAELGPIDVLVNNAGITR-DATFKKMTYEQWSAVIDTNLNSVFNVTQPVIDGMRER-GWGRIINISSV-NG 140 (242)
T ss_pred HHHHHHHHHHHHcCCCcEEEECCCCCC-CCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEEcch-hh
Confidence 999999999999999999999999876 4667888999999999999999999999999999876 56799999987 56
Q ss_pred CCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhcccccc
Q 010380 337 GSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPRIRV 416 (512)
Q Consensus 337 ~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~r~~~ 416 (512)
..+.++...|+++|++++.+++.++.|+.+.||++++++||++.|++...... ... .......++.++..
T Consensus 141 ~~~~~~~~~y~~sk~a~~~~~~~la~~~~~~~i~v~~i~pg~~~t~~~~~~~~----~~~------~~~~~~~~~~~~~~ 210 (242)
T TIGR01829 141 QKGQFGQTNYSAAKAGMIGFTKALAQEGATKGVTVNTISPGYIATDMVMAMRE----DVL------NSIVAQIPVGRLGR 210 (242)
T ss_pred cCCCCCcchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEeeCCCcCccccccch----HHH------HHHHhcCCCCCCcC
Confidence 67778899999999999999999999999999999999999999998643211 110 11112345667788
Q ss_pred chhhhhhhhhcCChHHHHHHHHHHhc
Q 010380 417 VKGSGKAINYLTPPRILLALVTAWLR 442 (512)
Q Consensus 417 ~~~va~~v~~L~s~~~~~~~~~~~~~ 442 (512)
|+++++.+.||+.+...+.++..+..
T Consensus 211 ~~~~a~~~~~l~~~~~~~~~G~~~~~ 236 (242)
T TIGR01829 211 PEEIAAAVAFLASEEAGYITGATLSI 236 (242)
T ss_pred HHHHHHHHHHHcCchhcCccCCEEEe
Confidence 99999999999987643333433333
|
(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families. |
| >PRK08251 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=249.10 Aligned_cols=214 Identities=27% Similarity=0.339 Sum_probs=184.0
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChh
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPA 256 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~ 256 (512)
+|+++||||++|||++++++|+++|++|++++|++++++++.+++.+.. .+.++.++.+|++|++
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~---------------~~~~~~~~~~D~~~~~ 66 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARY---------------PGIKVAVAALDVNDHD 66 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhC---------------CCceEEEEEcCCCCHH
Confidence 6889999999999999999999999999999999988877766665421 2457899999999999
Q ss_pred hHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCC
Q 010380 257 DVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSG 336 (512)
Q Consensus 257 sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~ 336 (512)
++.++++++.+.++++|++|||||+.. ..++.+.+.+.+++.+++|+.+++.+++.++|.|++. +.++||++||. .+
T Consensus 67 ~~~~~~~~~~~~~~~id~vi~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~iv~~sS~-~~ 143 (248)
T PRK08251 67 QVFEVFAEFRDELGGLDRVIVNAGIGK-GARLGTGKFWANKATAETNFVAALAQCEAAMEIFREQ-GSGHLVLISSV-SA 143 (248)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCcCC-CCCcCcCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCeEEEEecc-cc
Confidence 999999999999999999999999976 5667778889999999999999999999999999876 46799999987 45
Q ss_pred CCCCCC-cchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhccccc
Q 010380 337 GSSTPL-TAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPRIR 415 (512)
Q Consensus 337 ~~~~p~-~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~r~~ 415 (512)
..+.+. ...|++||++++++++.++.|+.+.||+|++|+||+|+|++...... .....+|+++|+.+++.+.
T Consensus 144 ~~~~~~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~~~~~-------~~~~~~~~~~a~~i~~~~~ 216 (248)
T PRK08251 144 VRGLPGVKAAYAASKAGVASLGEGLRAELAKTPIKVSTIEPGYIRSEMNAKAKS-------TPFMVDTETGVKALVKAIE 216 (248)
T ss_pred ccCCCCCcccHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcCcchhhhcccc-------CCccCCHHHHHHHHHHHHh
Confidence 555664 68899999999999999999999899999999999999998754321 1123478999988876665
|
|
| >PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.7e-30 Score=248.84 Aligned_cols=237 Identities=26% Similarity=0.385 Sum_probs=195.4
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEE-EcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVA-SRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~-~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
++.+|+++||||++|||.++|++|+++|++|+++ +|+.++.++..+++.. .+.++.++.+|+
T Consensus 2 ~~~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~-----------------~~~~~~~~~~D~ 64 (247)
T PRK05565 2 KLMGKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKE-----------------EGGDAIAVKADV 64 (247)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHh-----------------cCCeEEEEECCC
Confidence 5678999999999999999999999999999999 9998877766666543 245788999999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|+++++++++.+.+.++++|++|||||... ..++.+.+.+++++.+++|+.+++++++.++|.|.++ +.+++|++||
T Consensus 65 ~~~~~~~~~~~~~~~~~~~id~vi~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~~v~~sS 142 (247)
T PRK05565 65 SSEEDVENLVEQIVEKFGKIDILVNNAGISN-FGLVTDMTDEEWDRVIDVNLTGVMLLTRYALPYMIKR-KSGVIVNISS 142 (247)
T ss_pred CCHHHHHHHHHHHHHHhCCCCEEEECCCcCC-CCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCcEEEEECC
Confidence 9999999999999999999999999999875 5778889999999999999999999999999999876 4688999998
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhcc
Q 010380 333 AGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVP 412 (512)
Q Consensus 333 ~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~ 412 (512)
. ....+.+....|+++|++++.++++++.++.+.||++++|+||+++|++...........+ .......
T Consensus 143 ~-~~~~~~~~~~~y~~sK~a~~~~~~~~~~~~~~~gi~~~~v~pg~v~t~~~~~~~~~~~~~~----------~~~~~~~ 211 (247)
T PRK05565 143 I-WGLIGASCEVLYSASKGAVNAFTKALAKELAPSGIRVNAVAPGAIDTEMWSSFSEEDKEGL----------AEEIPLG 211 (247)
T ss_pred H-hhccCCCCccHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEEECCccCccccccChHHHHHH----------HhcCCCC
Confidence 7 5666778889999999999999999999999999999999999999998644221111000 0122345
Q ss_pred ccccchhhhhhhhhcCChHHHHHHHHHH
Q 010380 413 RIRVVKGSGKAINYLTPPRILLALVTAW 440 (512)
Q Consensus 413 r~~~~~~va~~v~~L~s~~~~~~~~~~~ 440 (512)
+...+++++..+.+++++......+..+
T Consensus 212 ~~~~~~~va~~~~~l~~~~~~~~~g~~~ 239 (247)
T PRK05565 212 RLGKPEEIAKVVLFLASDDASYITGQII 239 (247)
T ss_pred CCCCHHHHHHHHHHHcCCccCCccCcEE
Confidence 5677888999888888766443333333
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-29 Score=249.79 Aligned_cols=187 Identities=26% Similarity=0.296 Sum_probs=168.5
Q ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhh
Q 010380 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPAD 257 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~s 257 (512)
|+++||||++|||++++++|+++|++|++++|+.+.++++.+++. +.++.++.||++|+++
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~-------------------~~~~~~~~~D~~~~~~ 62 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG-------------------AGNAWTGALDVTDRAA 62 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc-------------------CCceEEEEecCCCHHH
Confidence 789999999999999999999999999999999887766554431 3568899999999999
Q ss_pred HHHHHHHHHHH-cCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCC
Q 010380 258 VQKLSNFAVNE-FGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSG 336 (512)
Q Consensus 258 v~~~~~~i~~~-~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~ 336 (512)
++++++.+.+. ++++|+||||||... ..++.+.+.+++++++++|+.+++.+++++.+.|+++ +.++||++||. .+
T Consensus 63 v~~~~~~~~~~~~~~id~vi~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~iv~isS~-~~ 139 (260)
T PRK08267 63 WDAALADFAAATGGRLDVLFNNAGILR-GGPFEDIPLEAHDRVIDINVKGVLNGAHAALPYLKAT-PGARVINTSSA-SA 139 (260)
T ss_pred HHHHHHHHHHHcCCCCCEEEECCCCCC-CCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCCEEEEeCch-hh
Confidence 99999988776 789999999999876 5778889999999999999999999999999999876 56899999987 56
Q ss_pred CCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccC
Q 010380 337 GSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLS 386 (512)
Q Consensus 337 ~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~ 386 (512)
..+.++...|++||+++++|+++++.|+.+.||+|++|+||+++|++...
T Consensus 140 ~~~~~~~~~Y~~sKaa~~~~~~~l~~~~~~~~i~v~~i~pg~~~t~~~~~ 189 (260)
T PRK08267 140 IYGQPGLAVYSATKFAVRGLTEALDLEWRRHGIRVADVMPLFVDTAMLDG 189 (260)
T ss_pred CcCCCCchhhHHHHHHHHHHHHHHHHHhcccCcEEEEEecCCcCCccccc
Confidence 67778889999999999999999999999999999999999999998754
|
|
| >PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-29 Score=246.04 Aligned_cols=192 Identities=32% Similarity=0.510 Sum_probs=173.4
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
++++|+++||||++|||++++++|+++|++|++++|+.+++++..+++.. .+.++.++.+|++
T Consensus 4 ~~~~~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~-----------------~~~~~~~~~~D~~ 66 (239)
T PRK07666 4 SLQGKNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEA-----------------YGVKVVIATADVS 66 (239)
T ss_pred cCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHH-----------------hCCeEEEEECCCC
Confidence 35789999999999999999999999999999999998887777666643 3457889999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
|+++++++++++.+.++++|++|||||... ..++.+.+.+++++.+++|+.+++++++.+.|.|.++ +.+++|++||.
T Consensus 67 ~~~~~~~~~~~~~~~~~~id~vi~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~iv~~ss~ 144 (239)
T PRK07666 67 DYEEVTAAIEQLKNELGSIDILINNAGISK-FGKFLELDPAEWEKIIQVNLMGVYYATRAVLPSMIER-QSGDIINISST 144 (239)
T ss_pred CHHHHHHHHHHHHHHcCCccEEEEcCcccc-CCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCcEEEEEcch
Confidence 999999999999999999999999999875 5667788999999999999999999999999999876 56899999987
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCccc
Q 010380 334 GSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLL 385 (512)
Q Consensus 334 ~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~ 385 (512)
.+..+.++...|+++|+++..+++.++.|+.+.||++++|+||++.|++..
T Consensus 145 -~~~~~~~~~~~Y~~sK~a~~~~~~~~a~e~~~~gi~v~~v~pg~v~t~~~~ 195 (239)
T PRK07666 145 -AGQKGAAVTSAYSASKFGVLGLTESLMQEVRKHNIRVTALTPSTVATDMAV 195 (239)
T ss_pred -hhccCCCCCcchHHHHHHHHHHHHHHHHHhhccCcEEEEEecCcccCcchh
Confidence 566777888899999999999999999999999999999999999999864
|
|
| >TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.3e-30 Score=285.06 Aligned_cols=258 Identities=22% Similarity=0.271 Sum_probs=205.6
Q ss_pred cCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEcc
Q 010380 172 HCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACD 251 (512)
Q Consensus 172 ~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~D 251 (512)
...+.+|+++||||++|||+++|++|+++|++|++++|+.+.++...+++.+.. ...++..+.||
T Consensus 409 ~~~l~gkvvLVTGasggIG~aiA~~La~~Ga~Vvi~~r~~~~~~~~~~~l~~~~---------------~~~~~~~v~~D 473 (676)
T TIGR02632 409 EKTLARRVAFVTGGAGGIGRETARRLAAEGAHVVLADLNLEAAEAVAAEINGQF---------------GAGRAVALKMD 473 (676)
T ss_pred CcCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhhc---------------CCCcEEEEECC
Confidence 345789999999999999999999999999999999999888777766665321 12357789999
Q ss_pred CCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeec
Q 010380 252 VCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD 331 (512)
Q Consensus 252 ltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vS 331 (512)
++|+++++++++++.+.+|++|+||||||... ..++.+.+.++|+..+++|+.+++++++.++|.|++++.+++||++|
T Consensus 474 vtd~~~v~~a~~~i~~~~g~iDilV~nAG~~~-~~~~~~~~~e~~~~~~~vN~~g~~~l~~~al~~m~~~~~~g~IV~iS 552 (676)
T TIGR02632 474 VTDEQAVKAAFADVALAYGGVDIVVNNAGIAT-SSPFEETTLQEWQLNLDILATGYFLVAREAFRQMREQGLGGNIVFIA 552 (676)
T ss_pred CCCHHHHHHHHHHHHHhcCCCcEEEECCCCCC-CCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 99999999999999999999999999999876 57788899999999999999999999999999998875568999999
Q ss_pred CCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccC--CcccCCcchhhhhhhhhhcC--CHHHHH
Q 010380 332 GAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLT--DLLLSGSTIQNKQMFNIICE--LPETVA 407 (512)
Q Consensus 332 S~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T--~~~~~~~~~~~~~~~~~~~~--~pe~vA 407 (512)
|. .+..+.++..+|++||+++++++++++.|+.+.||+||+|+||.|.| +++................. ......
T Consensus 553 S~-~a~~~~~~~~aY~aSKaA~~~l~r~lA~el~~~gIrVn~V~Pg~V~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 631 (676)
T TIGR02632 553 SK-NAVYAGKNASAYSAAKAAEAHLARCLAAEGGTYGIRVNTVNPDAVLQGSGIWDGEWREERAAAYGIPADELEEHYAK 631 (676)
T ss_pred Ch-hhcCCCCCCHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEECCceecCcccccccchhhhhhcccCChHHHHHHHHh
Confidence 87 56677888999999999999999999999999999999999999975 33322110000000000000 011234
Q ss_pred HHhccccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 408 RTLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 408 ~~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
+.++++...|+|+++++.||+++.....++..+..||++
T Consensus 632 r~~l~r~v~peDVA~av~~L~s~~~~~~TG~~i~vDGG~ 670 (676)
T TIGR02632 632 RTLLKRHIFPADIAEAVFFLASSKSEKTTGCIITVDGGV 670 (676)
T ss_pred cCCcCCCcCHHHHHHHHHHHhCCcccCCcCcEEEECCCc
Confidence 457788889999999999999866555556666666654
|
|
| >PRK05693 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-29 Score=252.50 Aligned_cols=182 Identities=29% Similarity=0.416 Sum_probs=163.5
Q ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhh
Q 010380 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPAD 257 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~s 257 (512)
|++|||||++|||++++++|+++|++|++++|+.+++++. .+ ..+.++.+|++|+++
T Consensus 2 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~----~~-------------------~~~~~~~~Dl~~~~~ 58 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEAL----AA-------------------AGFTAVQLDVNDGAA 58 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH----HH-------------------CCCeEEEeeCCCHHH
Confidence 6899999999999999999999999999999997665432 11 135678999999999
Q ss_pred HHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCCC
Q 010380 258 VQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGG 337 (512)
Q Consensus 258 v~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~~ 337 (512)
++++++.+.+.++++|+||||||... .+++.+.+.+++++.+++|+.|++.++++++|.|.+. .|+||++||. ++.
T Consensus 59 ~~~~~~~~~~~~~~id~vi~~ag~~~-~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~--~g~iv~isS~-~~~ 134 (274)
T PRK05693 59 LARLAEELEAEHGGLDVLINNAGYGA-MGPLLDGGVEAMRRQFETNVFAVVGVTRALFPLLRRS--RGLVVNIGSV-SGV 134 (274)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCCCC-CCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhc--CCEEEEECCc-ccc
Confidence 99999999999999999999999876 5778889999999999999999999999999999764 5899999987 567
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccC
Q 010380 338 SSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLS 386 (512)
Q Consensus 338 ~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~ 386 (512)
.+.+....|++||++++.|+++++.|+.++||+|++|+||+|+|++...
T Consensus 135 ~~~~~~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~v~pg~v~t~~~~~ 183 (274)
T PRK05693 135 LVTPFAGAYCASKAAVHALSDALRLELAPFGVQVMEVQPGAIASQFASN 183 (274)
T ss_pred CCCCCccHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCccccccccc
Confidence 7788889999999999999999999999999999999999999998754
|
|
| >PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-29 Score=249.25 Aligned_cols=237 Identities=22% Similarity=0.321 Sum_probs=187.5
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcCh-hhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCCh
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSGDRVVVASRSS-ESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEP 255 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~-~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~ 255 (512)
.|+++||||++|||.++|++|+++|++|++++|+. +..++..++++. .+.++.++.+|++|+
T Consensus 2 ~k~vlItG~sg~iG~~la~~L~~~g~~vi~~~r~~~~~~~~~~~~~~~-----------------~~~~~~~~~~D~~~~ 64 (256)
T PRK12745 2 RPVALVTGGRRGIGLGIARALAAAGFDLAINDRPDDEELAATQQELRA-----------------LGVEVIFFPADVADL 64 (256)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCCEEEEEecCchhHHHHHHHHHHh-----------------cCCceEEEEecCCCH
Confidence 47899999999999999999999999999999874 344444444432 245788999999999
Q ss_pred hhHHHHHHHHHHHcCCCcccccccccCCC-CCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCC-----CCeEEe
Q 010380 256 ADVQKLSNFAVNEFGSIDIWINNAGTNKG-FKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPK-----GGHIFN 329 (512)
Q Consensus 256 ~sv~~~~~~i~~~~g~IDvLInnAG~~~~-~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~-----~g~IV~ 329 (512)
+++.++++++.+.++++|++|||||...+ ..++.+.+.+++++.+++|+.+++++++++.+.|.++.+ .++||+
T Consensus 65 ~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~ 144 (256)
T PRK12745 65 SAHEAMLDAAQAAWGRIDCLVNNAGVGVKVRGDLLDLTPESFDRVLAINLRGPFFLTQAVAKRMLAQPEPEELPHRSIVF 144 (256)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCccCCCCCCChhhCCHHHHHHHHHhcchHHHHHHHHHHHHHHhccCcCCCCCcEEEE
Confidence 99999999999999999999999998531 346778899999999999999999999999999987643 457999
Q ss_pred ecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHH
Q 010380 330 MDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVART 409 (512)
Q Consensus 330 vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~ 409 (512)
+||. .+..+.++...|++||++++.++++++.|+.++||+|++|+||++.|++......... ... +. ...
T Consensus 145 ~sS~-~~~~~~~~~~~Y~~sK~a~~~~~~~l~~~~~~~gi~v~~i~pg~v~t~~~~~~~~~~~----~~~----~~-~~~ 214 (256)
T PRK12745 145 VSSV-NAIMVSPNRGEYCISKAGLSMAAQLFAARLAEEGIGVYEVRPGLIKTDMTAPVTAKYD----ALI----AK-GLV 214 (256)
T ss_pred ECCh-hhccCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCEEEEEecCCCcCccccccchhHH----hhh----hh-cCC
Confidence 9987 5666778889999999999999999999999999999999999999988543211110 000 00 012
Q ss_pred hccccccchhhhhhhhhcCChHHHHHHHHHH
Q 010380 410 LVPRIRVVKGSGKAINYLTPPRILLALVTAW 440 (512)
Q Consensus 410 ~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~ 440 (512)
++.+...++++++++.+++.+.....++..+
T Consensus 215 ~~~~~~~~~d~a~~i~~l~~~~~~~~~G~~~ 245 (256)
T PRK12745 215 PMPRWGEPEDVARAVAALASGDLPYSTGQAI 245 (256)
T ss_pred CcCCCcCHHHHHHHHHHHhCCcccccCCCEE
Confidence 3456678888999888888765433333333
|
|
| >PRK12746 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-29 Score=248.94 Aligned_cols=228 Identities=24% Similarity=0.338 Sum_probs=186.2
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEE-EcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVA-SRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~-~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
++++++++||||++|||.++|++|+++|++|++. .|+.+++++..+++.. .+.++.++.+|+
T Consensus 3 ~~~~~~ilItGasg~iG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~~~~-----------------~~~~~~~~~~D~ 65 (254)
T PRK12746 3 NLDGKVALVTGASRGIGRAIAMRLANDGALVAIHYGRNKQAADETIREIES-----------------NGGKAFLIEADL 65 (254)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHh-----------------cCCcEEEEEcCc
Confidence 3678999999999999999999999999999775 7887776666655543 235688899999
Q ss_pred CChhhHHHHHHHHHHHc------CCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCe
Q 010380 253 CEPADVQKLSNFAVNEF------GSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGH 326 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~------g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~ 326 (512)
+|++++.++++++.+++ +++|++|||||... ..++.+.+.+.|+.++++|+.+++++++.++|.|.+ .++
T Consensus 66 ~d~~~i~~~~~~~~~~~~~~~~~~~id~vi~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~---~~~ 141 (254)
T PRK12746 66 NSIDGVKKLVEQLKNELQIRVGTSEIDILVNNAGIGT-QGTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRA---EGR 141 (254)
T ss_pred CCHHHHHHHHHHHHHHhccccCCCCccEEEECCCCCC-CCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhc---CCE
Confidence 99999999999998887 47999999999876 567788899999999999999999999999999864 368
Q ss_pred EEeecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHH
Q 010380 327 IFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETV 406 (512)
Q Consensus 327 IV~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~v 406 (512)
+|++||. .+..+.++...|++||+|++.++++++.++.+.||+|++++||++.|++....... ..... ...
T Consensus 142 ~v~~sS~-~~~~~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~--~~~~~------~~~ 212 (254)
T PRK12746 142 VINISSA-EVRLGFTGSIAYGLSKGALNTMTLPLAKHLGERGITVNTIMPGYTKTDINAKLLDD--PEIRN------FAT 212 (254)
T ss_pred EEEECCH-HhcCCCCCCcchHhhHHHHHHHHHHHHHHHhhcCcEEEEEEECCccCcchhhhccC--hhHHH------HHH
Confidence 9999887 56677888999999999999999999999999999999999999999986432111 11111 001
Q ss_pred HHHhccccccchhhhhhhhhcCChH
Q 010380 407 ARTLVPRIRVVKGSGKAINYLTPPR 431 (512)
Q Consensus 407 A~~~l~r~~~~~~va~~v~~L~s~~ 431 (512)
.....++...++|+++.+.+++.+.
T Consensus 213 ~~~~~~~~~~~~dva~~~~~l~~~~ 237 (254)
T PRK12746 213 NSSVFGRIGQVEDIADAVAFLASSD 237 (254)
T ss_pred hcCCcCCCCCHHHHHHHHHHHcCcc
Confidence 1223456677888888888887754
|
|
| >COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-29 Score=246.64 Aligned_cols=189 Identities=32% Similarity=0.525 Sum_probs=164.1
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhh--HHHHHHHHHHHHhhhhhhcCCCCcccccC-ceEEEEEc
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSES--VRMTVTELEENLKEGMMAAGGSSKKNLVH-AKVAGIAC 250 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~--l~~~~~el~~~~~~~~~~~g~~~~~~~~g-~~v~~v~~ 250 (512)
++.+|+++||||++|||+++|+.|+++|++|+++.|+.+. .+...+... . .+ ..+.+..+
T Consensus 2 ~~~~~~ilITGas~GiG~aia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~---~--------------~~~~~~~~~~~ 64 (251)
T COG1028 2 DLSGKVALVTGASSGIGRAIARALAREGARVVVAARRSEEEAAEALAAAIK---E--------------AGGGRAAAVAA 64 (251)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEcCCCchhhHHHHHHHHH---h--------------cCCCcEEEEEe
Confidence 5789999999999999999999999999999988888664 233322222 0 12 36888899
Q ss_pred cCCC-hhhHHHHHHHHHHHcCCCcccccccccCCCC-CCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEE
Q 010380 251 DVCE-PADVQKLSNFAVNEFGSIDIWINNAGTNKGF-KPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIF 328 (512)
Q Consensus 251 Dltd-~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~-~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV 328 (512)
|+++ +++++.+++.+.+.+|++|++|||||+.. . .++.+.+.++|++++++|+.|++.+++.+.|.|+++ +||
T Consensus 65 Dvs~~~~~v~~~~~~~~~~~g~id~lvnnAg~~~-~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~----~Iv 139 (251)
T COG1028 65 DVSDDEESVEALVAAAEEEFGRIDILVNNAGIAG-PDAPLEELTEEDWDRVIDVNLLGAFLLTRAALPLMKKQ----RIV 139 (251)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCC-CCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHhhhhC----eEE
Confidence 9998 99999999999999999999999999976 4 488999999999999999999999999888888832 999
Q ss_pred eecCCCCCCCCCCC-cchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccC
Q 010380 329 NMDGAGSGGSSTPL-TAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLS 386 (512)
Q Consensus 329 ~vSS~~a~~~~~p~-~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~ 386 (512)
++||. .+. +.++ .++|++||+|+++|++.++.|+.+.||+|++|+||+++|++...
T Consensus 140 ~isS~-~~~-~~~~~~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~v~PG~~~t~~~~~ 196 (251)
T COG1028 140 NISSV-AGL-GGPPGQAAYAASKAALIGLTKALALELAPRGIRVNAVAPGYIDTPMTAA 196 (251)
T ss_pred EECCc-hhc-CCCCCcchHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEeccCCCcchhh
Confidence 99998 455 6566 59999999999999999999999999999999999999999764
|
|
| >PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-29 Score=248.50 Aligned_cols=223 Identities=18% Similarity=0.253 Sum_probs=187.3
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
.+++|+++||||++|||.+++++|+++|++|++++|+.+++++..+++.+. ...++.++.+|++
T Consensus 9 ~~~~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~----------------~~~~~~~~~~d~~ 72 (247)
T PRK08945 9 LLKDRIILVTGAGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAA----------------GGPQPAIIPLDLL 72 (247)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhc----------------CCCCceEEEeccc
Confidence 568999999999999999999999999999999999988877766666542 1235666777776
Q ss_pred --ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeec
Q 010380 254 --EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD 331 (512)
Q Consensus 254 --d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vS 331 (512)
++++++++++.+.+.++++|+||||||......++.+.+.+++++.+++|+.++++++++++|.|.++ +.++||++|
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~l~~~-~~~~iv~~s 151 (247)
T PRK08945 73 TATPQNYQQLADTIEEQFGRLDGVLHNAGLLGELGPMEQQDPEVWQDVMQVNVNATFMLTQALLPLLLKS-PAASLVFTS 151 (247)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhC-CCCEEEEEc
Confidence 78999999999999999999999999986545677888999999999999999999999999999887 568999999
Q ss_pred CCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhc
Q 010380 332 GAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLV 411 (512)
Q Consensus 332 S~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l 411 (512)
|. .+..+.++...|++||++++++++.++.++...||++++++||+++|++........ . -
T Consensus 152 s~-~~~~~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~~~~v~pg~v~t~~~~~~~~~~----------~--------~ 212 (247)
T PRK08945 152 SS-VGRQGRANWGAYAVSKFATEGMMQVLADEYQGTNLRVNCINPGGTRTAMRASAFPGE----------D--------P 212 (247)
T ss_pred cH-hhcCCCCCCcccHHHHHHHHHHHHHHHHHhcccCEEEEEEecCCccCcchhhhcCcc----------c--------c
Confidence 87 566777888999999999999999999999999999999999999998743211100 0 1
Q ss_pred cccccchhhhhhhhhcCChHH
Q 010380 412 PRIRVVKGSGKAINYLTPPRI 432 (512)
Q Consensus 412 ~r~~~~~~va~~v~~L~s~~~ 432 (512)
.++..|+++++.+.|++++..
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~ 233 (247)
T PRK08945 213 QKLKTPEDIMPLYLYLMGDDS 233 (247)
T ss_pred cCCCCHHHHHHHHHHHhCccc
Confidence 234677788888888887654
|
|
| >PRK12827 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-29 Score=244.59 Aligned_cols=225 Identities=25% Similarity=0.391 Sum_probs=183.0
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcC----hhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEc
Q 010380 175 AGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRS----SESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIAC 250 (512)
Q Consensus 175 l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~----~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~ 250 (512)
+.+++++||||++|||+++|++|+++|++|++++|. .+..++..+++.. .+.++.++.+
T Consensus 4 ~~~~~ilItGasg~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~ 66 (249)
T PRK12827 4 LDSRRVLITGGSGGLGRAIAVRLAADGADVIVLDIHPMRGRAEADAVAAGIEA-----------------AGGKALGLAF 66 (249)
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEcCcccccHHHHHHHHHHHHh-----------------cCCcEEEEEc
Confidence 567899999999999999999999999999997764 3333333333322 3457889999
Q ss_pred cCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHH-HHHHhCCCCCeEEe
Q 010380 251 DVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAM-RVMRDQPKGGHIFN 329 (512)
Q Consensus 251 Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~l-p~m~~~~~~g~IV~ 329 (512)
|++|+++++++++++.+.++++|++|||||... ..++.+.+.+++++.+++|+.+++.+++++. |.|+++ +.++||+
T Consensus 67 Dl~~~~~~~~~~~~~~~~~~~~d~vi~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~~iv~ 144 (249)
T PRK12827 67 DVRDFAATRAALDAGVEEFGRLDILVNNAGIAT-DAAFAELSIEEWDDVIDVNLDGFFNVTQAALPPMIRAR-RGGRIVN 144 (249)
T ss_pred cCCCHHHHHHHHHHHHHHhCCCCEEEECCCCCC-CCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC-CCeEEEE
Confidence 999999999999999999999999999999876 5778889999999999999999999999999 555544 5678999
Q ss_pred ecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHH
Q 010380 330 MDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVART 409 (512)
Q Consensus 330 vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~ 409 (512)
+||. .+..+.++...|+++|++++.++++++.|+.+.||++++|+||+++|++....... +......
T Consensus 145 ~sS~-~~~~~~~~~~~y~~sK~a~~~~~~~l~~~~~~~~i~~~~i~pg~v~t~~~~~~~~~------------~~~~~~~ 211 (249)
T PRK12827 145 IASV-AGVRGNRGQVNYAASKAGLIGLTKTLANELAPRGITVNAVAPGAINTPMADNAAPT------------EHLLNPV 211 (249)
T ss_pred ECCc-hhcCCCCCCchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEEECCcCCCcccccchH------------HHHHhhC
Confidence 9987 56667788899999999999999999999999999999999999999986432110 1112223
Q ss_pred hccccccchhhhhhhhhcCChH
Q 010380 410 LVPRIRVVKGSGKAINYLTPPR 431 (512)
Q Consensus 410 ~l~r~~~~~~va~~v~~L~s~~ 431 (512)
+..+...++++++.+.+++.+.
T Consensus 212 ~~~~~~~~~~va~~~~~l~~~~ 233 (249)
T PRK12827 212 PVQRLGEPDEVAALVAFLVSDA 233 (249)
T ss_pred CCcCCcCHHHHHHHHHHHcCcc
Confidence 3445567788888888887654
|
|
| >PRK07775 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.8e-29 Score=248.01 Aligned_cols=229 Identities=21% Similarity=0.317 Sum_probs=186.5
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
++.+|+++||||++|||+++|++|+++|++|++++|+.+.+++..+++.. .+.++.++.+|++
T Consensus 7 ~~~~~~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~-----------------~~~~~~~~~~Dl~ 69 (274)
T PRK07775 7 HPDRRPALVAGASSGIGAATAIELAAAGFPVALGARRVEKCEELVDKIRA-----------------DGGEAVAFPLDVT 69 (274)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-----------------cCCeEEEEECCCC
Confidence 46678999999999999999999999999999999998776665555543 3457888999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
|++++.++++++.+.++++|++|||||... ..+..+.+.+++++.+++|+.+++++++.++|.|.++ +.++||++||.
T Consensus 70 ~~~~~~~~~~~~~~~~~~id~vi~~Ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~l~~~~~~-~~g~iv~isS~ 147 (274)
T PRK07775 70 DPDSVKSFVAQAEEALGEIEVLVSGAGDTY-FGKLHEISTEQFESQVQIHLVGANRLATAVLPGMIER-RRGDLIFVGSD 147 (274)
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEECCCcCC-CcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCceEEEECCh
Confidence 999999999999999999999999999876 4667788999999999999999999999999999876 56899999987
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHH---Hh
Q 010380 334 GSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVAR---TL 410 (512)
Q Consensus 334 ~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~---~~ 410 (512)
.+..+.+....|+++|++++.+++.++.++.+.||++++|+||+++|++........ .... .+.... ..
T Consensus 148 -~~~~~~~~~~~Y~~sK~a~~~l~~~~~~~~~~~gi~v~~v~pG~~~t~~~~~~~~~~---~~~~----~~~~~~~~~~~ 219 (274)
T PRK07775 148 -VALRQRPHMGAYGAAKAGLEAMVTNLQMELEGTGVRASIVHPGPTLTGMGWSLPAEV---IGPM----LEDWAKWGQAR 219 (274)
T ss_pred -HhcCCCCCcchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeCCcccCcccccCChhh---hhHH----HHHHHHhcccc
Confidence 566777888899999999999999999999989999999999999999753211110 0000 111111 11
Q ss_pred ccccccchhhhhhhhhcCC
Q 010380 411 VPRIRVVKGSGKAINYLTP 429 (512)
Q Consensus 411 l~r~~~~~~va~~v~~L~s 429 (512)
...+..++|++.++.++++
T Consensus 220 ~~~~~~~~dva~a~~~~~~ 238 (274)
T PRK07775 220 HDYFLRASDLARAITFVAE 238 (274)
T ss_pred cccccCHHHHHHHHHHHhc
Confidence 2345677888888877775
|
|
| >PRK09134 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.4e-29 Score=245.38 Aligned_cols=224 Identities=21% Similarity=0.294 Sum_probs=182.1
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcC-hhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRS-SESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~-~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
+..+|+++||||++|||++++++|+++|++|+++.++ .+.++.+.+++.. .+.++.++.||+
T Consensus 6 ~~~~k~vlItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~Dl 68 (258)
T PRK09134 6 MAAPRAALVTGAARRIGRAIALDLAAHGFDVAVHYNRSRDEAEALAAEIRA-----------------LGRRAVALQADL 68 (258)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHh-----------------cCCeEEEEEcCC
Confidence 4568999999999999999999999999999887664 4555555555543 245788999999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|.+++.++++++.+.++++|+||||||... ..++.+.+.+++++++++|+.+++++++++.+.|.+. ..++||+++|
T Consensus 69 ~d~~~~~~~~~~~~~~~~~iD~vi~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~iv~~~s 146 (258)
T PRK09134 69 ADEAEVRALVARASAALGPITLLVNNASLFE-YDSAASFTRASWDRHMATNLRAPFVLAQAFARALPAD-ARGLVVNMID 146 (258)
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCcCCC-CCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCceEEEECc
Confidence 9999999999999999999999999999876 4677889999999999999999999999999999875 4689999987
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhcc
Q 010380 333 AGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVP 412 (512)
Q Consensus 333 ~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~ 412 (512)
. ....+.|....|++||+++++++++++.|+.+. |+|++|+||++.|+..... ..+. +.....+++
T Consensus 147 ~-~~~~~~p~~~~Y~~sK~a~~~~~~~la~~~~~~-i~v~~i~PG~v~t~~~~~~-----~~~~-------~~~~~~~~~ 212 (258)
T PRK09134 147 Q-RVWNLNPDFLSYTLSKAALWTATRTLAQALAPR-IRVNAIGPGPTLPSGRQSP-----EDFA-------RQHAATPLG 212 (258)
T ss_pred h-hhcCCCCCchHHHHHHHHHHHHHHHHHHHhcCC-cEEEEeecccccCCcccCh-----HHHH-------HHHhcCCCC
Confidence 6 456667778899999999999999999999875 9999999999998752110 0000 111123345
Q ss_pred ccccchhhhhhhhhcCCh
Q 010380 413 RIRVVKGSGKAINYLTPP 430 (512)
Q Consensus 413 r~~~~~~va~~v~~L~s~ 430 (512)
+...+++++.++.+++..
T Consensus 213 ~~~~~~d~a~~~~~~~~~ 230 (258)
T PRK09134 213 RGSTPEEIAAAVRYLLDA 230 (258)
T ss_pred CCcCHHHHHHHHHHHhcC
Confidence 567788888888887763
|
|
| >PRK06914 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.9e-29 Score=249.19 Aligned_cols=191 Identities=25% Similarity=0.337 Sum_probs=170.4
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCCh
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEP 255 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~ 255 (512)
.+|+++||||++|||.++|++|+++|++|++++|+.+.+++..+++.... .+.++.++.+|++|+
T Consensus 2 ~~k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~---------------~~~~~~~~~~D~~d~ 66 (280)
T PRK06914 2 NKKIAIVTGASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLN---------------LQQNIKVQQLDVTDQ 66 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC---------------CCCceeEEecCCCCH
Confidence 57899999999999999999999999999999999888777665554310 134688999999999
Q ss_pred hhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCC
Q 010380 256 ADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGS 335 (512)
Q Consensus 256 ~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a 335 (512)
+++++ ++++.+.++++|++|||||... ...+.+.+.+++++.+++|+.+++.+++.++|.|++. +.++||++||. .
T Consensus 67 ~~~~~-~~~~~~~~~~id~vv~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~iv~vsS~-~ 142 (280)
T PRK06914 67 NSIHN-FQLVLKEIGRIDLLVNNAGYAN-GGFVEEIPVEEYRKQFETNVFGAISVTQAVLPYMRKQ-KSGKIINISSI-S 142 (280)
T ss_pred HHHHH-HHHHHHhcCCeeEEEECCcccc-cCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCCEEEEECcc-c
Confidence 99999 8999899999999999999876 5677888999999999999999999999999999876 56899999987 5
Q ss_pred CCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCccc
Q 010380 336 GGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLL 385 (512)
Q Consensus 336 ~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~ 385 (512)
+..+.++...|++||++++.|+++++.|+.++||+|++++||+++|++..
T Consensus 143 ~~~~~~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~ 192 (280)
T PRK06914 143 GRVGFPGLSPYVSSKYALEGFSESLRLELKPFGIDVALIEPGSYNTNIWE 192 (280)
T ss_pred ccCCCCCCchhHHhHHHHHHHHHHHHHHhhhhCCEEEEEecCCcccchhh
Confidence 67778889999999999999999999999999999999999999999864
|
|
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-28 Score=243.33 Aligned_cols=185 Identities=28% Similarity=0.429 Sum_probs=163.9
Q ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhh
Q 010380 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPAD 257 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~s 257 (512)
++++||||++|||.++|++|+++|++|++++|++++++...+++ +.++.++.+|++|.++
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~--------------------~~~~~~~~~Dl~~~~~ 60 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDEL--------------------GDNLYIAQLDVRNRAA 60 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh--------------------ccceEEEEecCCCHHH
Confidence 36899999999999999999999999999999987765544332 2467889999999999
Q ss_pred HHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCCC
Q 010380 258 VQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGG 337 (512)
Q Consensus 258 v~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~~ 337 (512)
++++++++.+.++++|++|||||......++.+.+.+++++++++|+.|++.+++.++|.|.++ +.++||++||. .+.
T Consensus 61 i~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~iv~isS~-~~~ 138 (248)
T PRK10538 61 IEEMLASLPAEWRNIDVLVNNAGLALGLEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVER-NHGHIINIGST-AGS 138 (248)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCcEEEEECCc-ccC
Confidence 9999999999999999999999986434567788999999999999999999999999999876 46899999987 566
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcc
Q 010380 338 SSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLL 384 (512)
Q Consensus 338 ~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~ 384 (512)
.+.++...|+++|+++++|++.++.|+.+.||+|++|+||++.|++.
T Consensus 139 ~~~~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~i~~~~~ 185 (248)
T PRK10538 139 WPYAGGNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGGTEF 185 (248)
T ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCeeccccc
Confidence 67788899999999999999999999999999999999999985543
|
|
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.7e-29 Score=278.28 Aligned_cols=216 Identities=22% Similarity=0.315 Sum_probs=185.2
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
++++|+++||||++|||+++|++|+++|++|++++|+++.++++.+++.+ .+.++.++.||++
T Consensus 368 ~~~~k~vlItGas~giG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-----------------~~~~~~~~~~Dv~ 430 (657)
T PRK07201 368 PLVGKVVLITGASSGIGRATAIKVAEAGATVFLVARNGEALDELVAEIRA-----------------KGGTAHAYTCDLT 430 (657)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh-----------------cCCcEEEEEecCC
Confidence 56799999999999999999999999999999999999888877777654 3457889999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCC--CHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeec
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQF--TNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD 331 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~--s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vS 331 (512)
|+++++++++++.+.+|++|++|||||... ...+.+. +.+++++++++|+.|++.+++.++|.|+++ +.|+||++|
T Consensus 431 ~~~~~~~~~~~~~~~~g~id~li~~Ag~~~-~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~g~iv~is 508 (657)
T PRK07201 431 DSAAVDHTVKDILAEHGHVDYLVNNAGRSI-RRSVENSTDRFHDYERTMAVNYFGAVRLILGLLPHMRER-RFGHVVNVS 508 (657)
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEECCCCCC-CCChhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-CCCEEEEEC
Confidence 999999999999999999999999999864 2333332 257899999999999999999999999877 568999999
Q ss_pred CCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhc
Q 010380 332 GAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLV 411 (512)
Q Consensus 332 S~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l 411 (512)
|. ++..+.++.+.|++||+++++|+++++.|+.+.||+||+|+||+|+|+|...... .......+|+++|+.++
T Consensus 509 S~-~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~pg~v~T~~~~~~~~-----~~~~~~~~~~~~a~~i~ 582 (657)
T PRK07201 509 SI-GVQTNAPRFSAYVASKAALDAFSDVAASETLSDGITFTTIHMPLVRTPMIAPTKR-----YNNVPTISPEEAADMVV 582 (657)
T ss_pred Ch-hhcCCCCCcchHHHHHHHHHHHHHHHHHHHHhhCCcEEEEECCcCcccccCcccc-----ccCCCCCCHHHHHHHHH
Confidence 98 5677788899999999999999999999999999999999999999999753211 11122357999999887
Q ss_pred ccc
Q 010380 412 PRI 414 (512)
Q Consensus 412 ~r~ 414 (512)
..+
T Consensus 583 ~~~ 585 (657)
T PRK07201 583 RAI 585 (657)
T ss_pred HHH
Confidence 654
|
|
| >PRK07060 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-29 Score=245.62 Aligned_cols=238 Identities=21% Similarity=0.296 Sum_probs=190.7
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
+++++|+++||||++|||.++++.|+++|++|++++|+.+++++..++ ....++.+|+
T Consensus 5 ~~~~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~----------------------~~~~~~~~D~ 62 (245)
T PRK07060 5 FDFSGKSVLVTGASSGIGRACAVALAQRGARVVAAARNAAALDRLAGE----------------------TGCEPLRLDV 62 (245)
T ss_pred cccCCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH----------------------hCCeEEEecC
Confidence 467899999999999999999999999999999999998765443222 1245688999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|+++++++++. ++++|++|||||... ..+..+.+.+++++.+++|+.+++.+++++++.+.++...++||++||
T Consensus 63 ~~~~~v~~~~~~----~~~~d~vi~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS 137 (245)
T PRK07060 63 GDDAAIRAALAA----AGAFDGLVNCAGIAS-LESALDMTAEGFDRVMAVNARGAALVARHVARAMIAAGRGGSIVNVSS 137 (245)
T ss_pred CCHHHHHHHHHH----hCCCCEEEECCCCCC-CCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcEEEEEcc
Confidence 999988887664 578999999999876 566777899999999999999999999999999987644589999998
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhcc
Q 010380 333 AGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVP 412 (512)
Q Consensus 333 ~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~ 412 (512)
. .+..+.+....|++||++++.++++++.++.+.||++++|+||++.|++......... . ........+..
T Consensus 138 ~-~~~~~~~~~~~y~~sK~a~~~~~~~~a~~~~~~~i~v~~v~pg~v~~~~~~~~~~~~~--~------~~~~~~~~~~~ 208 (245)
T PRK07060 138 Q-AALVGLPDHLAYCASKAALDAITRVLCVELGPHGIRVNSVNPTVTLTPMAAEAWSDPQ--K------SGPMLAAIPLG 208 (245)
T ss_pred H-HHcCCCCCCcHhHHHHHHHHHHHHHHHHHHhhhCeEEEEEeeCCCCCchhhhhccCHH--H------HHHHHhcCCCC
Confidence 7 5667778889999999999999999999999899999999999999998543211100 0 01111233456
Q ss_pred ccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 413 RIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 413 r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
++..++|++..+.+++.+.....++..+..+|++
T Consensus 209 ~~~~~~d~a~~~~~l~~~~~~~~~G~~~~~~~g~ 242 (245)
T PRK07060 209 RFAEVDDVAAPILFLLSDAASMVSGVSLPVDGGY 242 (245)
T ss_pred CCCCHHHHHHHHHHHcCcccCCccCcEEeECCCc
Confidence 7788999999999999876555556556555554
|
|
| >PRK09730 putative NAD(P)-binding oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-28 Score=241.56 Aligned_cols=228 Identities=23% Similarity=0.309 Sum_probs=184.0
Q ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEE-EcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChh
Q 010380 178 RNVVITGSTRGLGKALAREFLLSGDRVVVA-SRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPA 256 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~Ga~Vvl~-~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~ 256 (512)
|+++||||++|||.+++++|+++|++|+++ .|+.++.++...++.. .+.++..+.+|++|++
T Consensus 2 ~~~lItGa~g~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~D~~d~~ 64 (247)
T PRK09730 2 AIALVTGGSRGIGRATALLLAQEGYTVAVNYQQNLHAAQEVVNLITQ-----------------AGGKAFVLQADISDEN 64 (247)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHh-----------------CCCeEEEEEccCCCHH
Confidence 689999999999999999999999999874 6777766666666543 3456888999999999
Q ss_pred hHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCC--CCCeEEeecCCC
Q 010380 257 DVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQP--KGGHIFNMDGAG 334 (512)
Q Consensus 257 sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~--~~g~IV~vSS~~ 334 (512)
+++++++++.+.++++|++|||||......++.+.+.++++..+++|+.+++.+++.+++.|.++. ++|+||++||.
T Consensus 65 ~i~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~~v~~sS~- 143 (247)
T PRK09730 65 QVVAMFTAIDQHDEPLAALVNNAGILFTQCTVENLTAERINRVLSTNVTGYFLCCREAVKRMALKHGGSGGAIVNVSSA- 143 (247)
T ss_pred HHHHHHHHHHHhCCCCCEEEECCCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCCcEEEEECch-
Confidence 999999999999999999999999864456778889999999999999999999999999998652 35789999987
Q ss_pred CCCCCCCC-cchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhccc
Q 010380 335 SGGSSTPL-TAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPR 413 (512)
Q Consensus 335 a~~~~~p~-~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~r 413 (512)
.+..+.|+ ...|+++|++++.++++++.|+.+.||++++|+||++.||+........ .... .....++.+
T Consensus 144 ~~~~~~~~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~i~pg~~~~~~~~~~~~~~--~~~~-------~~~~~~~~~ 214 (247)
T PRK09730 144 ASRLGAPGEYVDYAASKGAIDTLTTGLSLEVAAQGIRVNCVRPGFIYTEMHASGGEPG--RVDR-------VKSNIPMQR 214 (247)
T ss_pred hhccCCCCcccchHhHHHHHHHHHHHHHHHHHHhCeEEEEEEeCCCcCcccccCCCHH--HHHH-------HHhcCCCCC
Confidence 44455554 4689999999999999999999999999999999999999754321110 0000 011123445
Q ss_pred cccchhhhhhhhhcCChHH
Q 010380 414 IRVVKGSGKAINYLTPPRI 432 (512)
Q Consensus 414 ~~~~~~va~~v~~L~s~~~ 432 (512)
...++++++.+.|++++..
T Consensus 215 ~~~~~dva~~~~~~~~~~~ 233 (247)
T PRK09730 215 GGQPEEVAQAIVWLLSDKA 233 (247)
T ss_pred CcCHHHHHHHHHhhcChhh
Confidence 5678899999999887653
|
|
| >PRK07102 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-28 Score=241.54 Aligned_cols=211 Identities=22% Similarity=0.256 Sum_probs=179.1
Q ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhh
Q 010380 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPAD 257 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~s 257 (512)
|+++||||++|||.+++++|+++|++|++++|++++.++..+++... .+.++.++.||++|+++
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~----------------~~~~~~~~~~Dl~~~~~ 65 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAGARLYLAARDVERLERLADDLRAR----------------GAVAVSTHELDILDTAS 65 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHh----------------cCCeEEEEecCCCChHH
Confidence 68999999999999999999999999999999998877766665432 24578999999999999
Q ss_pred HHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCCC
Q 010380 258 VQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGG 337 (512)
Q Consensus 258 v~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~~ 337 (512)
++++++++.+ .+|++|||||... ..++.+.+.+++++.+++|+.+++++++++.|.|.++ +.++||++||. .+.
T Consensus 66 ~~~~~~~~~~---~~d~vv~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~iv~~sS~-~~~ 139 (243)
T PRK07102 66 HAAFLDSLPA---LPDIVLIAVGTLG-DQAACEADPALALREFRTNFEGPIALLTLLANRFEAR-GSGTIVGISSV-AGD 139 (243)
T ss_pred HHHHHHHHhh---cCCEEEECCcCCC-CcccccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhC-CCCEEEEEecc-ccc
Confidence 9999988754 4799999999876 4667788999999999999999999999999999876 56899999987 566
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhcccccc
Q 010380 338 SSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPRIRV 416 (512)
Q Consensus 338 ~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~r~~~ 416 (512)
.+.++...|+++|+++++++++++.|+.+.||+|++|+||+++|++...... ......+|+++++.++..+..
T Consensus 140 ~~~~~~~~Y~~sK~a~~~~~~~l~~el~~~gi~v~~v~pg~v~t~~~~~~~~------~~~~~~~~~~~a~~i~~~~~~ 212 (243)
T PRK07102 140 RGRASNYVYGSAKAALTAFLSGLRNRLFKSGVHVLTVKPGFVRTPMTAGLKL------PGPLTAQPEEVAKDIFRAIEK 212 (243)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHhhccCcEEEEEecCcccChhhhccCC------CccccCCHHHHHHHHHHHHhC
Confidence 7778889999999999999999999999999999999999999997643211 112234788888888765553
|
|
| >PRK06924 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.2e-29 Score=244.73 Aligned_cols=227 Identities=22% Similarity=0.292 Sum_probs=179.7
Q ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEEcCh-hhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChh
Q 010380 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSS-ESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPA 256 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~-~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~ 256 (512)
|+++||||++|||+++|++|+++|++|++++|++ +.+++ +.+. .+.+++++.+|++|++
T Consensus 2 k~vlItGasggiG~~ia~~l~~~g~~V~~~~r~~~~~~~~----~~~~----------------~~~~~~~~~~D~~~~~ 61 (251)
T PRK06924 2 RYVIITGTSQGLGEAIANQLLEKGTHVISISRTENKELTK----LAEQ----------------YNSNLTFHSLDLQDVH 61 (251)
T ss_pred cEEEEecCCchHHHHHHHHHHhcCCEEEEEeCCchHHHHH----HHhc----------------cCCceEEEEecCCCHH
Confidence 6899999999999999999999999999999986 33222 2111 2356888999999999
Q ss_pred hHHHHHHHHHHHcCCC--c--ccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 257 DVQKLSNFAVNEFGSI--D--IWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 257 sv~~~~~~i~~~~g~I--D--vLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+++++++++.+.++.. + ++|||||...+..++.+.+.++|++.+++|+.+++.+++.++|.|++....++||++||
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS 141 (251)
T PRK06924 62 ELETNFNEILSSIQEDNVSSIHLINNAGMVAPIKPIEKAESEELITNVHLNLLAPMILTSTFMKHTKDWKVDKRVINISS 141 (251)
T ss_pred HHHHHHHHHHHhcCcccCCceEEEEcceecccCcccccCCHHHHHHHhccceehHHHHHHHHHHHHhccCCCceEEEecc
Confidence 9999999988776532 2 89999998654567889999999999999999999999999999987545679999998
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhC--CCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHH-HHHH
Q 010380 333 AGSGGSSTPLTAVYGSTKCGLRQLQASLFKESK--RSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPET-VART 409 (512)
Q Consensus 333 ~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~--~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~-vA~~ 409 (512)
. .+..+.++...|+++|+|+++|++.++.|++ +.||+|++|.||+++|++........... +. ..+. ....
T Consensus 142 ~-~~~~~~~~~~~Y~~sKaa~~~~~~~la~e~~~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~-~~----~~~~~~~~~ 215 (251)
T PRK06924 142 G-AAKNPYFGWSAYCSSKAGLDMFTQTVATEQEEEEYPVKIVAFSPGVMDTNMQAQIRSSSKED-FT----NLDRFITLK 215 (251)
T ss_pred h-hhcCCCCCcHHHhHHHHHHHHHHHHHHHHhhhcCCCeEEEEecCCccccHhHHHHHhcCccc-ch----HHHHHHHHh
Confidence 7 5777888899999999999999999999975 56899999999999999854211000000 00 0011 1122
Q ss_pred hccccccchhhhhhhhhcCCh
Q 010380 410 LVPRIRVVKGSGKAINYLTPP 430 (512)
Q Consensus 410 ~l~r~~~~~~va~~v~~L~s~ 430 (512)
..+++..|++++..+.+++.+
T Consensus 216 ~~~~~~~~~dva~~~~~l~~~ 236 (251)
T PRK06924 216 EEGKLLSPEYVAKALRNLLET 236 (251)
T ss_pred hcCCcCCHHHHHHHHHHHHhc
Confidence 456778899999999888875
|
|
| >KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.4e-30 Score=237.73 Aligned_cols=185 Identities=29% Similarity=0.365 Sum_probs=167.9
Q ss_pred CCCEEEEECCC-ChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCC
Q 010380 176 GPRNVVITGST-RGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCE 254 (512)
Q Consensus 176 ~gk~vLVTGas-sGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd 254 (512)
..|.|+|||++ ||||.++|++|++.|+.|+.++|+.+...++..+ ..+.+..+|+++
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~----------------------~gl~~~kLDV~~ 63 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQ----------------------FGLKPYKLDVSK 63 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHh----------------------hCCeeEEeccCC
Confidence 56888999885 7999999999999999999999998876554322 247789999999
Q ss_pred hhhHHHHHHHHHH-HcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 255 PADVQKLSNFAVN-EFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 255 ~~sv~~~~~~i~~-~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
+++|.++..++.+ .+|.+|+|+||||..- ..|..|.+.++.++.|++|++|+++++|++...+.+. +|.|||+.|.
T Consensus 64 ~~~V~~v~~evr~~~~Gkld~L~NNAG~~C-~~Pa~d~~i~ave~~f~vNvfG~irM~~a~~h~lika--KGtIVnvgSl 140 (289)
T KOG1209|consen 64 PEEVVTVSGEVRANPDGKLDLLYNNAGQSC-TFPALDATIAAVEQCFKVNVFGHIRMCRALSHFLIKA--KGTIVNVGSL 140 (289)
T ss_pred hHHHHHHHHHHhhCCCCceEEEEcCCCCCc-ccccccCCHHHHHhhhccceeeeehHHHHHHHHHHHc--cceEEEecce
Confidence 9999999999988 7899999999999876 6789999999999999999999999999999777764 7999999998
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccC
Q 010380 334 GSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLS 386 (512)
Q Consensus 334 ~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~ 386 (512)
.+..+.|..+.|.+||+|+.++++.|+.|+++.||+|..+.||.|.|++..+
T Consensus 141 -~~~vpfpf~~iYsAsKAAihay~~tLrlEl~PFgv~Vin~itGGv~T~Ia~k 192 (289)
T KOG1209|consen 141 -AGVVPFPFGSIYSASKAAIHAYARTLRLELKPFGVRVINAITGGVATDIADK 192 (289)
T ss_pred -eEEeccchhhhhhHHHHHHHHhhhhcEEeeeccccEEEEecccceecccccC
Confidence 7889999999999999999999999999999999999999999999998765
|
|
| >KOG1611 consensus Predicted short chain-type dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.2e-29 Score=234.26 Aligned_cols=193 Identities=26% Similarity=0.361 Sum_probs=161.5
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHC-CCEEE-EEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLS-GDRVV-VASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~-Ga~Vv-l~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
..|.++||||++|||+.++++|.+. |-.++ .+.|+++++ .+++....+ ...+++.+++|++
T Consensus 2 spksv~ItGaNRGIGlgLVk~llk~~~i~~iiat~r~~e~a---~~~l~~k~~--------------~d~rvHii~Ldvt 64 (249)
T KOG1611|consen 2 SPKSVFITGANRGIGLGLVKELLKDKGIEVIIATARDPEKA---ATELALKSK--------------SDSRVHIIQLDVT 64 (249)
T ss_pred CCccEEEeccCcchhHHHHHHHhcCCCcEEEEEecCChHHh---hHHHHHhhc--------------cCCceEEEEEecc
Confidence 4677999999999999999999975 55554 456667765 333333211 3679999999999
Q ss_pred ChhhHHHHHHHHHHH--cCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCC--------
Q 010380 254 EPADVQKLSNFAVNE--FGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPK-------- 323 (512)
Q Consensus 254 d~~sv~~~~~~i~~~--~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~-------- 323 (512)
+.+++.++++++.+- ...+|+||||||+..+.....+.+.+.|.+++++|..|+++++|+++|++++...
T Consensus 65 ~deS~~~~~~~V~~iVg~~GlnlLinNaGi~~~y~~~~~~~r~~~~~~~~tN~v~~il~~Q~~lPLLkkaas~~~gd~~s 144 (249)
T KOG1611|consen 65 CDESIDNFVQEVEKIVGSDGLNLLINNAGIALSYNTVLKPSRAVLLEQYETNAVGPILLTQAFLPLLKKAASKVSGDGLS 144 (249)
T ss_pred cHHHHHHHHHHHHhhcccCCceEEEeccceeeecccccCCcHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcccCCccc
Confidence 999999999999887 4579999999999887778888889999999999999999999999999987521
Q ss_pred --CCeEEeecCCCCCCCC--CCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCccc
Q 010380 324 --GGHIFNMDGAGSGGSS--TPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLL 385 (512)
Q Consensus 324 --~g~IV~vSS~~a~~~~--~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~ 385 (512)
...|||+||..++..+ .....+|..||+|++.|+|+++.|+.+.+|-|..+|||||+|+|..
T Consensus 145 ~~raaIinisS~~~s~~~~~~~~~~AYrmSKaAlN~f~ksls~dL~~~~ilv~sihPGwV~TDMgg 210 (249)
T KOG1611|consen 145 VSRAAIINISSSAGSIGGFRPGGLSAYRMSKAALNMFAKSLSVDLKDDHILVVSIHPGWVQTDMGG 210 (249)
T ss_pred ccceeEEEeeccccccCCCCCcchhhhHhhHHHHHHHHHHhhhhhcCCcEEEEEecCCeEEcCCCC
Confidence 3479999887544322 3456899999999999999999999999999999999999999975
|
|
| >PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.3e-29 Score=267.62 Aligned_cols=236 Identities=18% Similarity=0.274 Sum_probs=190.8
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
.+++|+++||||++|||+++|++|+++|++|++++|.... +..+++.+. ....++.||++
T Consensus 207 ~~~g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~~~--~~l~~~~~~------------------~~~~~~~~Dv~ 266 (450)
T PRK08261 207 PLAGKVALVTGAARGIGAAIAEVLARDGAHVVCLDVPAAG--EALAAVANR------------------VGGTALALDIT 266 (450)
T ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCccH--HHHHHHHHH------------------cCCeEEEEeCC
Confidence 4678999999999999999999999999999999885321 111222211 12346889999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
|+++++++++.+.+.++++|+||||||+.. ...+.+.+.++|++++++|+.+++++++++++.+..+ ++++||++||.
T Consensus 267 ~~~~~~~~~~~~~~~~g~id~vi~~AG~~~-~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~-~~g~iv~~SS~ 344 (450)
T PRK08261 267 APDAPARIAEHLAERHGGLDIVVHNAGITR-DKTLANMDEARWDSVLAVNLLAPLRITEALLAAGALG-DGGRIVGVSSI 344 (450)
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEECCCcCC-CCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhhc-CCCEEEEECCh
Confidence 999999999999999999999999999877 5778899999999999999999999999999976544 46899999987
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHH--Hhc
Q 010380 334 GSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVAR--TLV 411 (512)
Q Consensus 334 ~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~--~~l 411 (512)
++..+.+++..|+++|+++++|+++++.|+.++||++|+|+||+++|+|....... .++..+ ..+
T Consensus 345 -~~~~g~~~~~~Y~asKaal~~~~~~la~el~~~gi~v~~v~PG~i~t~~~~~~~~~------------~~~~~~~~~~l 411 (450)
T PRK08261 345 -SGIAGNRGQTNYAASKAGVIGLVQALAPLLAERGITINAVAPGFIETQMTAAIPFA------------TREAGRRMNSL 411 (450)
T ss_pred -hhcCCCCCChHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEeCcCcchhhhccchh------------HHHHHhhcCCc
Confidence 56677889999999999999999999999999999999999999999986432110 111111 235
Q ss_pred cccccchhhhhhhhhcCChHHHHHHHHHHhccC
Q 010380 412 PRIRVVKGSGKAINYLTPPRILLALVTAWLRRG 444 (512)
Q Consensus 412 ~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g 444 (512)
.+...|+|++.++.||+++...+.++..+..+|
T Consensus 412 ~~~~~p~dva~~~~~l~s~~~~~itG~~i~v~g 444 (450)
T PRK08261 412 QQGGLPVDVAETIAWLASPASGGVTGNVVRVCG 444 (450)
T ss_pred CCCCCHHHHHHHHHHHhChhhcCCCCCEEEECC
Confidence 566789999999999999876555555544444
|
|
| >PRK07074 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-28 Score=243.07 Aligned_cols=239 Identities=23% Similarity=0.327 Sum_probs=191.8
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChh
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPA 256 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~ 256 (512)
+|+++||||++|||+++|++|+++|++|++++|+.++++...+++. +.++.++.+|++|++
T Consensus 2 ~k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~-------------------~~~~~~~~~D~~~~~ 62 (257)
T PRK07074 2 KRTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFADALG-------------------DARFVPVACDLTDAA 62 (257)
T ss_pred CCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc-------------------CCceEEEEecCCCHH
Confidence 5789999999999999999999999999999999887766555441 246888999999999
Q ss_pred hHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCC
Q 010380 257 DVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSG 336 (512)
Q Consensus 257 sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~ 336 (512)
++.++++++.++++++|++|||||... ..++.+.+.++|++.+++|+.+++.+.+++++.|.++ +.++||++||. .+
T Consensus 63 ~~~~~~~~~~~~~~~~d~vi~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~iv~~sS~-~~ 139 (257)
T PRK07074 63 SLAAALANAAAERGPVDVLVANAGAAR-AASLHDTTPASWRADNALNLEAAYLCVEAVLEGMLKR-SRGAVVNIGSV-NG 139 (257)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCCC-CCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCeEEEEEcch-hh
Confidence 999999999999999999999999876 4677788999999999999999999999999999876 46899999886 33
Q ss_pred CCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHH-HHHhccccc
Q 010380 337 GSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETV-ARTLVPRIR 415 (512)
Q Consensus 337 ~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~v-A~~~l~r~~ 415 (512)
.. ..+...|+++|++++.++++++.|+.++||+|++++||++.|++........ ..+ .+.. ...++.++.
T Consensus 140 ~~-~~~~~~y~~sK~a~~~~~~~~a~~~~~~gi~v~~v~pg~v~t~~~~~~~~~~-~~~-------~~~~~~~~~~~~~~ 210 (257)
T PRK07074 140 MA-ALGHPAYSAAKAGLIHYTKLLAVEYGRFGIRANAVAPGTVKTQAWEARVAAN-PQV-------FEELKKWYPLQDFA 210 (257)
T ss_pred cC-CCCCcccHHHHHHHHHHHHHHHHHHhHhCeEEEEEEeCcCCcchhhcccccC-hHH-------HHHHHhcCCCCCCC
Confidence 32 3456789999999999999999999999999999999999999853321111 111 0111 123456778
Q ss_pred cchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 416 VVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 416 ~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
.++|++.++.+|+++.....++..+..++++
T Consensus 211 ~~~d~a~~~~~l~~~~~~~~~g~~~~~~~g~ 241 (257)
T PRK07074 211 TPDDVANAVLFLASPAARAITGVCLPVDGGL 241 (257)
T ss_pred CHHHHHHHHHHHcCchhcCcCCcEEEeCCCc
Confidence 8999999999999875544444444444443
|
|
| >PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-28 Score=238.58 Aligned_cols=229 Identities=26% Similarity=0.420 Sum_probs=187.6
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhh-HHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEcc
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSES-VRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACD 251 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~-l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~D 251 (512)
+++++|+++||||+++||.+++++|+++|++|+++.|+.++ .+...+++.. .+.++.++.+|
T Consensus 1 ~~~~~~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~D 63 (248)
T PRK05557 1 MSLEGKVALVTGASRGIGRAIAERLAAQGANVVINYASSEAGAEALVAEIGA-----------------LGGKALAVQGD 63 (248)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHh-----------------cCCceEEEEcC
Confidence 35788999999999999999999999999999888887553 4444444432 24578889999
Q ss_pred CCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeec
Q 010380 252 VCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD 331 (512)
Q Consensus 252 ltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vS 331 (512)
++|++++.++++++.+.++++|++|||||... ..+..+.+.+++++.+++|+.+++.+.+.+++.+.+. +.+++|++|
T Consensus 64 l~~~~~~~~~~~~~~~~~~~id~vi~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~~v~is 141 (248)
T PRK05557 64 VSDAESVERAVDEAKAEFGGVDILVNNAGITR-DNLLMRMKEEDWDRVIDTNLTGVFNLTKAVARPMMKQ-RSGRIINIS 141 (248)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCCcCC-CCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCeEEEEEc
Confidence 99999999999999999999999999999876 4677788999999999999999999999999999875 457899999
Q ss_pred CCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhc
Q 010380 332 GAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLV 411 (512)
Q Consensus 332 S~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l 411 (512)
|. .+..+.++...|+++|++++.+++.++.++.+.||++++++||+++|++......... .......+.
T Consensus 142 s~-~~~~~~~~~~~y~~sk~a~~~~~~~~a~~~~~~~i~~~~v~pg~~~~~~~~~~~~~~~----------~~~~~~~~~ 210 (248)
T PRK05557 142 SV-VGLMGNPGQANYAASKAGVIGFTKSLARELASRGITVNAVAPGFIETDMTDALPEDVK----------EAILAQIPL 210 (248)
T ss_pred cc-ccCcCCCCCchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCccCCccccccChHHH----------HHHHhcCCC
Confidence 87 5666778889999999999999999999999999999999999999988643211100 111122234
Q ss_pred cccccchhhhhhhhhcCChH
Q 010380 412 PRIRVVKGSGKAINYLTPPR 431 (512)
Q Consensus 412 ~r~~~~~~va~~v~~L~s~~ 431 (512)
++...+++++..+.+|+.+.
T Consensus 211 ~~~~~~~~va~~~~~l~~~~ 230 (248)
T PRK05557 211 GRLGQPEEIASAVAFLASDE 230 (248)
T ss_pred CCCcCHHHHHHHHHHHcCcc
Confidence 55667888888888888653
|
|
| >PRK06181 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-28 Score=241.88 Aligned_cols=189 Identities=28% Similarity=0.457 Sum_probs=169.5
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChh
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPA 256 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~ 256 (512)
+++++||||++|||++++++|+++|++|++++|++++.++..+++.. .+.++.++.+|++|++
T Consensus 1 ~~~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~-----------------~~~~~~~~~~Dl~~~~ 63 (263)
T PRK06181 1 GKVVIITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELAD-----------------HGGEALVVPTDVSDAE 63 (263)
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-----------------cCCcEEEEEccCCCHH
Confidence 47899999999999999999999999999999998877766666543 2457888999999999
Q ss_pred hHHHHHHHHHHHcCCCcccccccccCCCCCCCcCC-CHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCC
Q 010380 257 DVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQF-TNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGS 335 (512)
Q Consensus 257 sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~-s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a 335 (512)
+++.+++.+.++++++|++|||||... ..++.+. +.+++++.+++|+.+++.+++.++|.|.+. .++||++||. +
T Consensus 64 ~~~~~~~~~~~~~~~id~vi~~ag~~~-~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~--~~~iv~~sS~-~ 139 (263)
T PRK06181 64 ACERLIEAAVARFGGIDILVNNAGITM-WSRFDELTDLSVFERVMRVNYLGAVYCTHAALPHLKAS--RGQIVVVSSL-A 139 (263)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCccc-ccchhccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc--CCEEEEEecc-c
Confidence 999999999999999999999999876 5667777 899999999999999999999999999764 5799999887 5
Q ss_pred CCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccC
Q 010380 336 GGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLS 386 (512)
Q Consensus 336 ~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~ 386 (512)
+..+.++...|+++|++++.+++.++.++.+.||++++|.||++.|++...
T Consensus 140 ~~~~~~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~~~~i~pg~v~t~~~~~ 190 (263)
T PRK06181 140 GLTGVPTRSGYAASKHALHGFFDSLRIELADDGVAVTVVCPGFVATDIRKR 190 (263)
T ss_pred ccCCCCCccHHHHHHHHHHHHHHHHHHHhhhcCceEEEEecCccccCcchh
Confidence 667778889999999999999999999999999999999999999998653
|
|
| >PRK07577 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-28 Score=240.24 Aligned_cols=225 Identities=19% Similarity=0.236 Sum_probs=180.1
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCCh
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEP 255 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~ 255 (512)
.+|+++||||++|||++++++|+++|++|++++|+.+.. .. ..++.+|++|+
T Consensus 2 ~~k~vlItG~s~~iG~~ia~~l~~~G~~v~~~~r~~~~~--------------------------~~--~~~~~~D~~~~ 53 (234)
T PRK07577 2 SSRTVLVTGATKGIGLALSLRLANLGHQVIGIARSAIDD--------------------------FP--GELFACDLADI 53 (234)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCcccc--------------------------cC--ceEEEeeCCCH
Confidence 578999999999999999999999999999999986530 01 13578999999
Q ss_pred hhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCC
Q 010380 256 ADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGS 335 (512)
Q Consensus 256 ~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a 335 (512)
++++++++++.+.+ ++|++|||||... ..++.+.+.+++++.+++|+.+++.+.+.++|.|+++ +.++||++||. .
T Consensus 54 ~~~~~~~~~~~~~~-~~d~vi~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~iv~~sS~-~ 129 (234)
T PRK07577 54 EQTAATLAQINEIH-PVDAIVNNVGIAL-PQPLGKIDLAALQDVYDLNVRAAVQVTQAFLEGMKLR-EQGRIVNICSR-A 129 (234)
T ss_pred HHHHHHHHHHHHhC-CCcEEEECCCCCC-CCChHHCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCcEEEEEccc-c
Confidence 99999999988876 6899999999876 5677888999999999999999999999999999876 56899999987 3
Q ss_pred CCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhccccc
Q 010380 336 GGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPRIR 415 (512)
Q Consensus 336 ~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~r~~ 415 (512)
..+.+....|++||+++++|+++++.|+.+.||+|++|+||+++|++............ .......++.+..
T Consensus 130 -~~~~~~~~~Y~~sK~a~~~~~~~~a~e~~~~gi~v~~i~pg~~~t~~~~~~~~~~~~~~-------~~~~~~~~~~~~~ 201 (234)
T PRK07577 130 -IFGALDRTSYSAAKSALVGCTRTWALELAEYGITVNAVAPGPIETELFRQTRPVGSEEE-------KRVLASIPMRRLG 201 (234)
T ss_pred -ccCCCCchHHHHHHHHHHHHHHHHHHHHHhhCcEEEEEecCcccCcccccccccchhHH-------HHHhhcCCCCCCc
Confidence 34567788999999999999999999999999999999999999998643221110000 0111223445566
Q ss_pred cchhhhhhhhhcCChHHHHHHHHHH
Q 010380 416 VVKGSGKAINYLTPPRILLALVTAW 440 (512)
Q Consensus 416 ~~~~va~~v~~L~s~~~~~~~~~~~ 440 (512)
.|++++..+.+|+++.....++..+
T Consensus 202 ~~~~~a~~~~~l~~~~~~~~~g~~~ 226 (234)
T PRK07577 202 TPEEVAAAIAFLLSDDAGFITGQVL 226 (234)
T ss_pred CHHHHHHHHHHHhCcccCCccceEE
Confidence 8889999998888765433333333
|
|
| >PRK06101 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-28 Score=240.26 Aligned_cols=204 Identities=20% Similarity=0.283 Sum_probs=169.1
Q ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhh
Q 010380 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPAD 257 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~s 257 (512)
++++||||++|||+++|++|+++|++|++++|+++++++..++ ..++.++.||++|+++
T Consensus 2 ~~vlItGas~giG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~---------------------~~~~~~~~~D~~~~~~ 60 (240)
T PRK06101 2 TAVLITGATSGIGKQLALDYAKQGWQVIACGRNQSVLDELHTQ---------------------SANIFTLAFDVTDHPG 60 (240)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHh---------------------cCCCeEEEeeCCCHHH
Confidence 6899999999999999999999999999999997765443221 2357789999999999
Q ss_pred HHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCCC
Q 010380 258 VQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGG 337 (512)
Q Consensus 258 v~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~~ 337 (512)
++++++++.. .+|++|||||... ..+..+.+.++|++++++|+.|+++++++++|+|.+ +++||++||. ++.
T Consensus 61 ~~~~~~~~~~---~~d~~i~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~---~~~iv~isS~-~~~ 132 (240)
T PRK06101 61 TKAALSQLPF---IPELWIFNAGDCE-YMDDGKVDATLMARVFNVNVLGVANCIEGIQPHLSC---GHRVVIVGSI-ASE 132 (240)
T ss_pred HHHHHHhccc---CCCEEEEcCcccc-cCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhc---CCeEEEEech-hhc
Confidence 9999887642 4799999999754 344556789999999999999999999999999963 4689999987 567
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhcccccc
Q 010380 338 SSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPRIRV 416 (512)
Q Consensus 338 ~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~r~~~ 416 (512)
.+.++...|++||+++++|++.++.|+.++||+|++|+||+|+|++....... .....+|+++|+.++..+..
T Consensus 133 ~~~~~~~~Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~pg~i~t~~~~~~~~~------~~~~~~~~~~a~~i~~~i~~ 205 (240)
T PRK06101 133 LALPRAEAYGASKAAVAYFARTLQLDLRPKGIEVVTVFPGFVATPLTDKNTFA------MPMIITVEQASQEIRAQLAR 205 (240)
T ss_pred cCCCCCchhhHHHHHHHHHHHHHHHHHHhcCceEEEEeCCcCCCCCcCCCCCC------CCcccCHHHHHHHHHHHHhc
Confidence 77888999999999999999999999999999999999999999986542110 11124799999988876654
|
|
| >KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-28 Score=241.35 Aligned_cols=224 Identities=23% Similarity=0.237 Sum_probs=196.0
Q ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhh
Q 010380 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPAD 257 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~s 257 (512)
++++|||+|+|||+++|.++..+|++|.++.|+.+++.++.++++-... -..+.+..+|+.|.++
T Consensus 34 ~hi~itggS~glgl~la~e~~~~ga~Vti~ar~~~kl~~a~~~l~l~~~---------------~~~v~~~S~d~~~Y~~ 98 (331)
T KOG1210|consen 34 RHILITGGSSGLGLALALECKREGADVTITARSGKKLLEAKAELELLTQ---------------VEDVSYKSVDVIDYDS 98 (331)
T ss_pred ceEEEecCcchhhHHHHHHHHHccCceEEEeccHHHHHHHHhhhhhhhc---------------cceeeEeccccccHHH
Confidence 7899999999999999999999999999999999999999999876422 1238899999999999
Q ss_pred HHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCCC
Q 010380 258 VQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGG 337 (512)
Q Consensus 258 v~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~~ 337 (512)
+..+++++.+.++++|.+|||||... .+.+.+.++++++..+++|++|.++++++.+|.|++..+.|+|+.+||. .+.
T Consensus 99 v~~~~~~l~~~~~~~d~l~~cAG~~v-~g~f~~~s~~~v~~~m~vNylgt~~v~~~~~~~mk~~~~~g~I~~vsS~-~a~ 176 (331)
T KOG1210|consen 99 VSKVIEELRDLEGPIDNLFCCAGVAV-PGLFEDLSPEVVEKLMDVNYLGTVNVAKAAARAMKKREHLGRIILVSSQ-LAM 176 (331)
T ss_pred HHHHHhhhhhccCCcceEEEecCccc-ccccccCCHHHHHHHHHhhhhhhHHHHHHHHHHhhccccCcEEEEehhh-hhh
Confidence 99999999999999999999999988 6899999999999999999999999999999999998667899999998 788
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhh----hhhcCCHHHHHHHhccc
Q 010380 338 SSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMF----NIICELPETVARTLVPR 413 (512)
Q Consensus 338 ~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~----~~~~~~pe~vA~~~l~r 413 (512)
.+..++++|+++|+|+.+|+++|++|+.++||+|..+.|+.+.||.+.......+.... ..-...+|++|..+++.
T Consensus 177 ~~i~GysaYs~sK~alrgLa~~l~qE~i~~~v~Vt~~~P~~~~tpGfE~En~tkP~~t~ii~g~ss~~~~e~~a~~~~~~ 256 (331)
T KOG1210|consen 177 LGIYGYSAYSPSKFALRGLAEALRQELIKYGVHVTLYYPPDTLTPGFERENKTKPEETKIIEGGSSVIKCEEMAKAIVKG 256 (331)
T ss_pred cCcccccccccHHHHHHHHHHHHHHHHhhcceEEEEEcCCCCCCCccccccccCchheeeecCCCCCcCHHHHHHHHHhH
Confidence 89999999999999999999999999999999999999999999987654332222110 01113689999999876
Q ss_pred cccch
Q 010380 414 IRVVK 418 (512)
Q Consensus 414 ~~~~~ 418 (512)
+...+
T Consensus 257 ~~rg~ 261 (331)
T KOG1210|consen 257 MKRGN 261 (331)
T ss_pred HhhcC
Confidence 65443
|
|
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-28 Score=239.10 Aligned_cols=229 Identities=24% Similarity=0.362 Sum_probs=190.4
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
++.+|+++||||+++||.+++++|+++|++|++++|+.+++....+++.. .+.++.++.+|++
T Consensus 3 ~~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~-----------------~~~~~~~~~~Dl~ 65 (251)
T PRK12826 3 DLEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEA-----------------AGGKARARQVDVR 65 (251)
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-----------------cCCeEEEEECCCC
Confidence 46789999999999999999999999999999999998877766666644 3456889999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
|.++++++++++.+.++++|++|||||... ..++.+.+.+++++.+++|+.+++.+.+.++|.|.++ +.++||++||.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~d~vi~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~ii~~ss~ 143 (251)
T PRK12826 66 DRAALKAAVAAGVEDFGRLDILVANAGIFP-LTPFAEMDDEQWERVIDVNLTGTFLLTQAALPALIRA-GGGRIVLTSSV 143 (251)
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCCCCC-CCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCcEEEEEech
Confidence 999999999999999999999999999876 5677888999999999999999999999999999876 46799999987
Q ss_pred CCCC-CCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhcc
Q 010380 334 GSGG-SSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVP 412 (512)
Q Consensus 334 ~a~~-~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~ 412 (512)
.+. .+.++...|+++|++++.+++.++.++.+.|++++.++||.+.|++........ +. .......+++
T Consensus 144 -~~~~~~~~~~~~y~~sK~a~~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~~~~~~~---~~------~~~~~~~~~~ 213 (251)
T PRK12826 144 -AGPRVGYPGLAHYAASKAGLVGFTRALALELAARNITVNSVHPGGVDTPMAGNLGDAQ---WA------EAIAAAIPLG 213 (251)
T ss_pred -HhhccCCCCccHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEeeCCCCcchhhhcCchH---HH------HHHHhcCCCC
Confidence 444 677888999999999999999999999988999999999999999753321110 00 0111123445
Q ss_pred ccccchhhhhhhhhcCChH
Q 010380 413 RIRVVKGSGKAINYLTPPR 431 (512)
Q Consensus 413 r~~~~~~va~~v~~L~s~~ 431 (512)
++..++|+++.+.+++.+.
T Consensus 214 ~~~~~~dva~~~~~l~~~~ 232 (251)
T PRK12826 214 RLGEPEDIAAAVLFLASDE 232 (251)
T ss_pred CCcCHHHHHHHHHHHhCcc
Confidence 6677888888888877654
|
|
| >PRK09009 C factor cell-cell signaling protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.8e-29 Score=241.48 Aligned_cols=222 Identities=18% Similarity=0.165 Sum_probs=173.1
Q ss_pred CEEEEECCCChHHHHHHHHHHHCC--CEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCCh
Q 010380 178 RNVVITGSTRGLGKALAREFLLSG--DRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEP 255 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~G--a~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~ 255 (512)
++++||||++|||+++|++|+++| +.|++..|+.... . .+.++.+++||++|.
T Consensus 1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~~~~~~~~~------~-------------------~~~~~~~~~~Dls~~ 55 (235)
T PRK09009 1 MNILIVGGSGGIGKAMVKQLLERYPDATVHATYRHHKPD------F-------------------QHDNVQWHALDVTDE 55 (235)
T ss_pred CEEEEECCCChHHHHHHHHHHHhCCCCEEEEEccCCccc------c-------------------ccCceEEEEecCCCH
Confidence 478999999999999999999986 5666666654310 0 134688899999999
Q ss_pred hhHHHHHHHHHHHcCCCcccccccccCCC-----CCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEee
Q 010380 256 ADVQKLSNFAVNEFGSIDIWINNAGTNKG-----FKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNM 330 (512)
Q Consensus 256 ~sv~~~~~~i~~~~g~IDvLInnAG~~~~-----~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~v 330 (512)
++++++ .+.++++|+||||||.... ..++.+.+.+.|++.+++|+.+++.+++.++|.|+++ +.++|+++
T Consensus 56 ~~~~~~----~~~~~~id~li~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~-~~~~i~~i 130 (235)
T PRK09009 56 AEIKQL----SEQFTQLDWLINCVGMLHTQDKGPEKSLQALDADFFLQNITLNTLPSLLLAKHFTPKLKQS-ESAKFAVI 130 (235)
T ss_pred HHHHHH----HHhcCCCCEEEECCccccccccCcccccccCCHHHHHHHHHHHhHHHHHHHHHHHhhcccc-CCceEEEE
Confidence 998875 3456899999999998742 2356788999999999999999999999999999875 45789999
Q ss_pred cCCCCCC--CCCCCcchhhHHHHHHHHHHHHHHHHhCC--CCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHH
Q 010380 331 DGAGSGG--SSTPLTAVYGSTKCGLRQLQASLFKESKR--SKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETV 406 (512)
Q Consensus 331 SS~~a~~--~~~p~~~~Y~aSKaAl~~l~~sLa~El~~--~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~v 406 (512)
||..+.. .+.+++..|+++|+++++|+++|+.|+.+ .+|+||+|+||+|+|+|......
T Consensus 131 ss~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~e~~~~~~~i~v~~v~PG~v~t~~~~~~~~----------------- 193 (235)
T PRK09009 131 SAKVGSISDNRLGGWYSYRASKAALNMFLKTLSIEWQRSLKHGVVLALHPGTTDTALSKPFQQ----------------- 193 (235)
T ss_pred eecccccccCCCCCcchhhhhHHHHHHHHHHHHHHhhcccCCeEEEEEcccceecCCCcchhh-----------------
Confidence 8753221 23466789999999999999999999986 69999999999999998642110
Q ss_pred HHHhccccccchhhhhhhhhcCChHHHHHHHHHHhccCccc
Q 010380 407 ARTLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWF 447 (512)
Q Consensus 407 A~~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~ 447 (512)
..+..+...|+++++.+.+++.+.....++..+..+|.|+
T Consensus 194 -~~~~~~~~~~~~~a~~~~~l~~~~~~~~~g~~~~~~g~~~ 233 (235)
T PRK09009 194 -NVPKGKLFTPEYVAQCLLGIIANATPAQSGSFLAYDGETL 233 (235)
T ss_pred -ccccCCCCCHHHHHHHHHHHHHcCChhhCCcEEeeCCcCC
Confidence 1123445677788888888887766566666666777664
|
|
| >PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-27 Score=235.34 Aligned_cols=226 Identities=27% Similarity=0.415 Sum_probs=181.7
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcC-hhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEcc
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRS-SESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACD 251 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~-~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~D 251 (512)
+++++|++|||||++|||++++++|+++|++|++..|+ .+........+.+ .+.++.++.+|
T Consensus 2 ~~~~~~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~D 64 (252)
T PRK06077 2 YSLKDKVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRAEEMNETLKMVKE-----------------NGGEGIGVLAD 64 (252)
T ss_pred CCCCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHH-----------------cCCeeEEEEec
Confidence 35678999999999999999999999999999887764 4444444444433 23467789999
Q ss_pred CCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeec
Q 010380 252 VCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD 331 (512)
Q Consensus 252 ltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vS 331 (512)
+++++++.++++++.+.++++|+||||||... ..++.+.+.++++..+++|+.+++.+++++.|.|++ .++||++|
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~d~vi~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~---~~~iv~~s 140 (252)
T PRK06077 65 VSTREGCETLAKATIDRYGVADILVNNAGLGL-FSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMRE---GGAIVNIA 140 (252)
T ss_pred cCCHHHHHHHHHHHHHHcCCCCEEEECCCCCC-CCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhc---CcEEEEEc
Confidence 99999999999999999999999999999866 567788889999999999999999999999999975 37999999
Q ss_pred CCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHH--H
Q 010380 332 GAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVAR--T 409 (512)
Q Consensus 332 S~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~--~ 409 (512)
|. .+..+.++...|++||+++++++++++.|+.+ +|+++.|.||+++|++...... ......+...+ .
T Consensus 141 S~-~~~~~~~~~~~Y~~sK~~~~~~~~~l~~~~~~-~i~v~~v~Pg~i~t~~~~~~~~--------~~~~~~~~~~~~~~ 210 (252)
T PRK06077 141 SV-AGIRPAYGLSIYGAMKAAVINLTKYLALELAP-KIRVNAIAPGFVKTKLGESLFK--------VLGMSEKEFAEKFT 210 (252)
T ss_pred ch-hccCCCCCchHHHHHHHHHHHHHHHHHHHHhc-CCEEEEEeeCCccChHHHhhhh--------cccccHHHHHHhcC
Confidence 87 67778889999999999999999999999988 8999999999999997532111 00001111111 1
Q ss_pred hccccccchhhhhhhhhcCC
Q 010380 410 LVPRIRVVKGSGKAINYLTP 429 (512)
Q Consensus 410 ~l~r~~~~~~va~~v~~L~s 429 (512)
...+...|+|++..+.+++.
T Consensus 211 ~~~~~~~~~dva~~~~~~~~ 230 (252)
T PRK06077 211 LMGKILDPEEVAEFVAAILK 230 (252)
T ss_pred cCCCCCCHHHHHHHHHHHhC
Confidence 23355778888888887775
|
|
| >PRK06482 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-27 Score=239.92 Aligned_cols=186 Identities=25% Similarity=0.422 Sum_probs=165.9
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChh
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPA 256 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~ 256 (512)
.|++|||||++|||+++|++|+++|++|++++|+++.++...++ .+.++.++.+|++|.+
T Consensus 2 ~k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~--------------------~~~~~~~~~~D~~~~~ 61 (276)
T PRK06482 2 SKTWFITGASSGFGRGMTERLLARGDRVAATVRRPDALDDLKAR--------------------YGDRLWVLQLDVTDSA 61 (276)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh--------------------ccCceEEEEccCCCHH
Confidence 37899999999999999999999999999999997765443322 1246788999999999
Q ss_pred hHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCC
Q 010380 257 DVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSG 336 (512)
Q Consensus 257 sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~ 336 (512)
+++++++++.+.++++|+||||||... ..+..+.+.+++++.+++|+.++++++++++|+|+++ +.++||++||. ++
T Consensus 62 ~~~~~~~~~~~~~~~id~vi~~ag~~~-~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~-~~~~iv~~sS~-~~ 138 (276)
T PRK06482 62 AVRAVVDRAFAALGRIDVVVSNAGYGL-FGAAEELSDAQIRRQIDTNLIGSIQVIRAALPHLRRQ-GGGRIVQVSSE-GG 138 (276)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCCC-CcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCEEEEEcCc-cc
Confidence 999999999999999999999999877 5677888999999999999999999999999999876 56899999987 56
Q ss_pred CCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCccc
Q 010380 337 GSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLL 385 (512)
Q Consensus 337 ~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~ 385 (512)
..+.|+...|++||++++.|+++++.++.+.||++++++||.+.|++..
T Consensus 139 ~~~~~~~~~Y~~sK~a~~~~~~~l~~~~~~~gi~v~~v~pg~~~t~~~~ 187 (276)
T PRK06482 139 QIAYPGFSLYHATKWGIEGFVEAVAQEVAPFGIEFTIVEPGPARTNFGA 187 (276)
T ss_pred ccCCCCCchhHHHHHHHHHHHHHHHHHhhccCcEEEEEeCCccccCCcc
Confidence 6677889999999999999999999999999999999999999999853
|
|
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-27 Score=233.40 Aligned_cols=229 Identities=24% Similarity=0.399 Sum_probs=189.5
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
++.+|+++||||+++||.+++++|+++|++|++++|++++.+...+++.+ .+.++.++.+|++
T Consensus 2 ~~~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~-----------------~~~~~~~~~~D~~ 64 (246)
T PRK05653 2 SLQGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRA-----------------AGGEARVLVFDVS 64 (246)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHh-----------------cCCceEEEEccCC
Confidence 56678999999999999999999999999999999998887766666553 3567889999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
|++++.++++++.+.++++|++|||||... ..+..+.+.++++..+++|+.+++++++.+.|.|.+. +.++||++||.
T Consensus 65 ~~~~~~~~~~~~~~~~~~id~vi~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~-~~~~ii~~ss~ 142 (246)
T PRK05653 65 DEAAVRALIEAAVEAFGALDILVNNAGITR-DALLPRMSEEDWDRVIDVNLTGTFNVVRAALPPMIKA-RYGRIVNISSV 142 (246)
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCCcCC-CCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCcEEEEECcH
Confidence 999999999999888999999999999876 5677788999999999999999999999999999776 45799999987
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhccc
Q 010380 334 GSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPR 413 (512)
Q Consensus 334 ~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~r 413 (512)
.+..+.+....|+.+|++++.+++++++++.+.|+++++|+||.+.+++.........+ ......+.+.
T Consensus 143 -~~~~~~~~~~~y~~sk~~~~~~~~~l~~~~~~~~i~~~~i~pg~~~~~~~~~~~~~~~~----------~~~~~~~~~~ 211 (246)
T PRK05653 143 -SGVTGNPGQTNYSAAKAGVIGFTKALALELASRGITVNAVAPGFIDTDMTEGLPEEVKA----------EILKEIPLGR 211 (246)
T ss_pred -HhccCCCCCcHhHhHHHHHHHHHHHHHHHHhhcCeEEEEEEeCCcCCcchhhhhHHHHH----------HHHhcCCCCC
Confidence 45556777889999999999999999999998999999999999999875321110000 0011122345
Q ss_pred cccchhhhhhhhhcCChHH
Q 010380 414 IRVVKGSGKAINYLTPPRI 432 (512)
Q Consensus 414 ~~~~~~va~~v~~L~s~~~ 432 (512)
...++++++.+.+++.+..
T Consensus 212 ~~~~~dva~~~~~~~~~~~ 230 (246)
T PRK05653 212 LGQPEEVANAVAFLASDAA 230 (246)
T ss_pred CcCHHHHHHHHHHHcCchh
Confidence 5677888888888887654
|
|
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.1e-28 Score=272.60 Aligned_cols=249 Identities=25% Similarity=0.319 Sum_probs=202.3
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
.+.||+++||||++|||+++|++|+++|++|++++|+.+.++...+++.. . .++.++.||++
T Consensus 419 ~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~-----------------~-~~v~~v~~Dvt 480 (681)
T PRK08324 419 PLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGG-----------------P-DRALGVACDVT 480 (681)
T ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhc-----------------c-CcEEEEEecCC
Confidence 46789999999999999999999999999999999998887766655532 1 36888999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
|+++++++++++.+.+|++|++|||||... ..++.+.+.++|++.+++|+.|++.+++.+++.|++++.+|+||++||.
T Consensus 481 d~~~v~~~~~~~~~~~g~iDvvI~~AG~~~-~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS~ 559 (681)
T PRK08324 481 DEAAVQAAFEEAALAFGGVDIVVSNAGIAI-SGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIASK 559 (681)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCC-CCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECCc
Confidence 999999999999999999999999999877 5788899999999999999999999999999999987445899999987
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcc--cCCcccCCcchhhhhhhhhhcCCHH-----HH
Q 010380 334 GSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMV--LTDLLLSGSTIQNKQMFNIICELPE-----TV 406 (512)
Q Consensus 334 ~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V--~T~~~~~~~~~~~~~~~~~~~~~pe-----~v 406 (512)
.+..+.++...|++||+++++++++++.|+.+.||+||+|+||.| .|+++........... ....++ ..
T Consensus 560 -~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~Pg~v~~~t~~~~~~~~~~~~~~---~g~~~~~~~~~~~ 635 (681)
T PRK08324 560 -NAVNPGPNFGAYGAAKAAELHLVRQLALELGPDGIRVNGVNPDAVVRGSGIWTGEWIEARAAA---YGLSEEELEEFYR 635 (681)
T ss_pred -cccCCCCCcHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeCceeecCCccccchhhhhhhhh---ccCChHHHHHHHH
Confidence 566777889999999999999999999999999999999999999 8987643221110000 011122 22
Q ss_pred HHHhccccccchhhhhhhhhcCChHHHHHHHHHHhccCc
Q 010380 407 ARTLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGR 445 (512)
Q Consensus 407 A~~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~ 445 (512)
...++++...++|+++++.+++++.....++..+..+|+
T Consensus 636 ~~~~l~~~v~~~DvA~a~~~l~s~~~~~~tG~~i~vdgG 674 (681)
T PRK08324 636 ARNLLKREVTPEDVAEAVVFLASGLLSKTTGAIITVDGG 674 (681)
T ss_pred hcCCcCCccCHHHHHHHHHHHhCccccCCcCCEEEECCC
Confidence 344567788899999999999875443333444444443
|
|
| >PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-28 Score=224.27 Aligned_cols=163 Identities=35% Similarity=0.579 Sum_probs=150.9
Q ss_pred CEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcC--hhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCC
Q 010380 178 RNVVITGSTRGLGKALAREFLLSGD-RVVVASRS--SESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCE 254 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~--~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd 254 (512)
|+++||||++|||+++|++|+++|+ +|++++|+ .+..+++.+++.. .+.++.+++||+++
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~-----------------~~~~~~~~~~D~~~ 63 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKA-----------------PGAKITFIECDLSD 63 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHH-----------------TTSEEEEEESETTS
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccc-----------------cccccccccccccc
Confidence 6899999999999999999999975 78899999 6777777777764 45789999999999
Q ss_pred hhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCC
Q 010380 255 PADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAG 334 (512)
Q Consensus 255 ~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~ 334 (512)
+++++++++++.+.++++|++|||||... ..++.+.+.++|++++++|+.+++++.++++| + +.|+||++||.
T Consensus 64 ~~~~~~~~~~~~~~~~~ld~li~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~---~--~~g~iv~~sS~- 136 (167)
T PF00106_consen 64 PESIRALIEEVIKRFGPLDILINNAGIFS-DGSLDDLSEEELERVFRVNLFGPFLLAKALLP---Q--GGGKIVNISSI- 136 (167)
T ss_dssp HHHHHHHHHHHHHHHSSESEEEEECSCTT-SBSGGGSHHHHHHHHHHHHTHHHHHHHHHHHH---H--TTEEEEEEEEG-
T ss_pred ccccccccccccccccccccccccccccc-ccccccccchhhhhccccccceeeeeeehhee---c--cccceEEecch-
Confidence 99999999999999999999999999988 78999999999999999999999999999999 2 47999999998
Q ss_pred CCCCCCCCcchhhHHHHHHHHHHHHHHHHh
Q 010380 335 SGGSSTPLTAVYGSTKCGLRQLQASLFKES 364 (512)
Q Consensus 335 a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El 364 (512)
++..+.|+...|++||+|+++|+++|++|+
T Consensus 137 ~~~~~~~~~~~Y~askaal~~~~~~la~e~ 166 (167)
T PF00106_consen 137 AGVRGSPGMSAYSASKAALRGLTQSLAAEL 166 (167)
T ss_dssp GGTSSSTTBHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccCCCCChhHHHHHHHHHHHHHHHHHhc
Confidence 788999999999999999999999999996
|
As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A .... |
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7e-28 Score=238.52 Aligned_cols=238 Identities=26% Similarity=0.355 Sum_probs=187.1
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
++++|+++||||++|||++++++|+++|++|++++|+.+..++..+++.+ .++.++.+|++
T Consensus 8 ~~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~-------------------~~~~~~~~D~~ 68 (264)
T PRK12829 8 PLDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPG-------------------AKVTATVADVA 68 (264)
T ss_pred ccCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-------------------CceEEEEccCC
Confidence 46889999999999999999999999999999999998766554443311 25788999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
|+++++++++++.+.++++|+||||||...+..++.+.+.+++++++++|+.+++++++.+++.|...+.+++|+++||.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~vv~~ss~ 148 (264)
T PRK12829 69 DPAQVERVFDTAVERFGGLDVLVNNAGIAGPTGGIDEITPEQWEQTLAVNLNGQFYFARAAVPLLKASGHGGVIIALSSV 148 (264)
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCeEEEEeccc
Confidence 99999999999999999999999999987435677888999999999999999999999999998876333678888876
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhh-hhcCCHHHHHHHhcc
Q 010380 334 GSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFN-IICELPETVARTLVP 412 (512)
Q Consensus 334 ~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~-~~~~~pe~vA~~~l~ 412 (512)
++..+.+....|+.+|++++.+++.++.++...++++++|+||++.|++.............. ...............
T Consensus 149 -~~~~~~~~~~~y~~~K~a~~~~~~~l~~~~~~~~i~~~~l~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (264)
T PRK12829 149 -AGRLGYPGRTPYAASKWAVVGLVKSLAIELGPLGIRVNAILPGIVRGPRMRRVIEARAQQLGIGLDEMEQEYLEKISLG 227 (264)
T ss_pred -ccccCCCCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcCChHHHHHhhhhhhccCCChhHHHHHHHhcCCCC
Confidence 566677888899999999999999999999888999999999999999863321110000000 000001111122344
Q ss_pred ccccchhhhhhhhhcCChH
Q 010380 413 RIRVVKGSGKAINYLTPPR 431 (512)
Q Consensus 413 r~~~~~~va~~v~~L~s~~ 431 (512)
++..++++++++.+++++.
T Consensus 228 ~~~~~~d~a~~~~~l~~~~ 246 (264)
T PRK12829 228 RMVEPEDIAATALFLASPA 246 (264)
T ss_pred CCCCHHHHHHHHHHHcCcc
Confidence 5677888888888887643
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-27 Score=232.14 Aligned_cols=191 Identities=29% Similarity=0.481 Sum_probs=170.3
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
.+.+++++||||+++||.+++++|+++|++|++++|+++++++..+++.+ . .+++++.+|++
T Consensus 3 ~~~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~-----------------~-~~~~~~~~D~~ 64 (237)
T PRK07326 3 SLKGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNN-----------------K-GNVLGLAADVR 64 (237)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhc-----------------c-CcEEEEEccCC
Confidence 35689999999999999999999999999999999998887776666543 1 46888999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
|+++++++++++.+.++++|++|||||... ..++.+.+.+++++++++|+.+++.+++++++.|.+ +.++||++||.
T Consensus 65 ~~~~~~~~~~~~~~~~~~~d~vi~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~--~~~~iv~~ss~ 141 (237)
T PRK07326 65 DEADVQRAVDAIVAAFGGLDVLIANAGVGH-FAPVEELTPEEWRLVIDTNLTGAFYTIKAAVPALKR--GGGYIINISSL 141 (237)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCC-CCchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHH--CCeEEEEECCh
Confidence 999999999999999999999999999876 567888999999999999999999999999999943 45899999987
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccC
Q 010380 334 GSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLS 386 (512)
Q Consensus 334 ~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~ 386 (512)
.+..+.++...|+++|+++.++++.++.|+.+.|+++++|+||++.|++...
T Consensus 142 -~~~~~~~~~~~y~~sk~a~~~~~~~~~~~~~~~gi~v~~v~pg~~~t~~~~~ 193 (237)
T PRK07326 142 -AGTNFFAGGAAYNASKFGLVGFSEAAMLDLRQYGIKVSTIMPGSVATHFNGH 193 (237)
T ss_pred -hhccCCCCCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeccccCccccc
Confidence 5666777888999999999999999999999999999999999999997643
|
|
| >PRK07023 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.7e-28 Score=237.11 Aligned_cols=225 Identities=20% Similarity=0.279 Sum_probs=176.1
Q ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhh
Q 010380 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPAD 257 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~s 257 (512)
++++||||++|||+++|++|+++|++|++++|+.++. . .+. .+.++.++.+|++|+++
T Consensus 2 ~~vlItGasggiG~~ia~~l~~~G~~v~~~~r~~~~~--~----~~~----------------~~~~~~~~~~D~~~~~~ 59 (243)
T PRK07023 2 VRAIVTGHSRGLGAALAEQLLQPGIAVLGVARSRHPS--L----AAA----------------AGERLAEVELDLSDAAA 59 (243)
T ss_pred ceEEEecCCcchHHHHHHHHHhCCCEEEEEecCcchh--h----hhc----------------cCCeEEEEEeccCCHHH
Confidence 3689999999999999999999999999999986531 1 110 23578899999999999
Q ss_pred HHHHHHH-HHHHc---CCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 258 VQKLSNF-AVNEF---GSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 258 v~~~~~~-i~~~~---g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
+++++++ +.+.+ +++|++|||||...+..++.+.+.+++++.+++|+.+++.+++.+++.|.++ +.++||++||.
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~iv~isS~ 138 (243)
T PRK07023 60 AAAWLAGDLLAAFVDGASRVLLINNAGTVEPIGPLATLDAAAIARAVGLNVAAPLMLTAALAQAASDA-AERRILHISSG 138 (243)
T ss_pred HHHHHHHHHHHHhccCCCceEEEEcCcccCCCCccccCCHHHHHHHeeeeehHHHHHHHHHHHHhhcc-CCCEEEEEeCh
Confidence 9998776 55554 4799999999987645677888999999999999999999999999999875 56899999987
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhccc
Q 010380 334 GSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPR 413 (512)
Q Consensus 334 ~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~r 413 (512)
.+..+.+++..|+++|++++++++.++.+ .+.||++++|+||+++|++........ ...+. ...+.....+..+
T Consensus 139 -~~~~~~~~~~~Y~~sK~a~~~~~~~~~~~-~~~~i~v~~v~pg~~~t~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~ 212 (243)
T PRK07023 139 -AARNAYAGWSVYCATKAALDHHARAVALD-ANRALRIVSLAPGVVDTGMQATIRATD-EERFP---MRERFRELKASGA 212 (243)
T ss_pred -hhcCCCCCchHHHHHHHHHHHHHHHHHhc-CCCCcEEEEecCCccccHHHHHHHhcc-cccch---HHHHHHHhhhcCC
Confidence 67778888999999999999999999999 788999999999999999853210000 00000 0001122234566
Q ss_pred cccchhhhh-hhhhcCChH
Q 010380 414 IRVVKGSGK-AINYLTPPR 431 (512)
Q Consensus 414 ~~~~~~va~-~v~~L~s~~ 431 (512)
+..|++++. .+.+|.++.
T Consensus 213 ~~~~~~va~~~~~~l~~~~ 231 (243)
T PRK07023 213 LSTPEDAARRLIAYLLSDD 231 (243)
T ss_pred CCCHHHHHHHHHHHHhccc
Confidence 778888887 556776654
|
|
| >PRK07041 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.2e-28 Score=235.69 Aligned_cols=213 Identities=24% Similarity=0.312 Sum_probs=171.0
Q ss_pred EEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhhHHH
Q 010380 181 VITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPADVQK 260 (512)
Q Consensus 181 LVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~sv~~ 260 (512)
+||||++|||++++++|+++|++|++++|+.++++...+++++ +.+++++.+|++|++++.+
T Consensus 1 lItGas~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~------------------~~~~~~~~~Dl~~~~~~~~ 62 (230)
T PRK07041 1 LVVGGSSGIGLALARAFAAEGARVTIASRSRDRLAAAARALGG------------------GAPVRTAALDITDEAAVDA 62 (230)
T ss_pred CeecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc------------------CCceEEEEccCCCHHHHHH
Confidence 6999999999999999999999999999998776655544421 3568889999999999988
Q ss_pred HHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCC
Q 010380 261 LSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSST 340 (512)
Q Consensus 261 ~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~~~~~ 340 (512)
++++ .+++|+||||||... ..++.+.+.+++++++++|+.+++++++ .+.|. +.++||++||. ++..+.
T Consensus 63 ~~~~----~~~id~li~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~--~~~~~---~~g~iv~~ss~-~~~~~~ 131 (230)
T PRK07041 63 FFAE----AGPFDHVVITAADTP-GGPVRALPLAAAQAAMDSKFWGAYRVAR--AARIA---PGGSLTFVSGF-AAVRPS 131 (230)
T ss_pred HHHh----cCCCCEEEECCCCCC-CCChhhCCHHHHHHHHHHHHHHHHHHHh--hhhhc---CCeEEEEECch-hhcCCC
Confidence 8775 478999999999876 5677888999999999999999999999 44553 35899999988 567778
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhccccccchhh
Q 010380 341 PLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPRIRVVKGS 420 (512)
Q Consensus 341 p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~r~~~~~~v 420 (512)
++...|++||+++++++++++.|+.+ |+|++++||+++|++............. .......+++++..|+|+
T Consensus 132 ~~~~~Y~~sK~a~~~~~~~la~e~~~--irv~~i~pg~~~t~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~dv 203 (230)
T PRK07041 132 ASGVLQGAINAALEALARGLALELAP--VRVNTVSPGLVDTPLWSKLAGDAREAMF------AAAAERLPARRVGQPEDV 203 (230)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHhhC--ceEEEEeecccccHHHHhhhccchHHHH------HHHHhcCCCCCCcCHHHH
Confidence 88999999999999999999999975 9999999999999986432111100000 011112345567788999
Q ss_pred hhhhhhcCCh
Q 010380 421 GKAINYLTPP 430 (512)
Q Consensus 421 a~~v~~L~s~ 430 (512)
++++.||+..
T Consensus 204 a~~~~~l~~~ 213 (230)
T PRK07041 204 ANAILFLAAN 213 (230)
T ss_pred HHHHHHHhcC
Confidence 9999998874
|
|
| >PRK07578 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-27 Score=228.64 Aligned_cols=161 Identities=22% Similarity=0.367 Sum_probs=145.9
Q ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhhH
Q 010380 179 NVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPADV 258 (512)
Q Consensus 179 ~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~sv 258 (512)
+++||||++|||+++|++|+++ ++|++++|+.. .++||++|++++
T Consensus 2 ~vlItGas~giG~~la~~l~~~-~~vi~~~r~~~----------------------------------~~~~D~~~~~~~ 46 (199)
T PRK07578 2 KILVIGASGTIGRAVVAELSKR-HEVITAGRSSG----------------------------------DVQVDITDPASI 46 (199)
T ss_pred eEEEEcCCcHHHHHHHHHHHhc-CcEEEEecCCC----------------------------------ceEecCCChHHH
Confidence 6899999999999999999999 99999998742 267999999999
Q ss_pred HHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCC
Q 010380 259 QKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGS 338 (512)
Q Consensus 259 ~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~~~ 338 (512)
++++++ ++++|+||||||... ..++.+.+.++|++.+++|+.++++++++++|+|.+ .++|+++||. .+..
T Consensus 47 ~~~~~~----~~~id~lv~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~---~g~iv~iss~-~~~~ 117 (199)
T PRK07578 47 RALFEK----VGKVDAVVSAAGKVH-FAPLAEMTDEDFNVGLQSKLMGQVNLVLIGQHYLND---GGSFTLTSGI-LSDE 117 (199)
T ss_pred HHHHHh----cCCCCEEEECCCCCC-CCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCeEEEEccc-ccCC
Confidence 988764 478999999999876 577888999999999999999999999999999974 4789999987 5677
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcc
Q 010380 339 STPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLL 384 (512)
Q Consensus 339 ~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~ 384 (512)
+.++...|++||+|+++|+++++.|+ ++||+||+|+||+++|++.
T Consensus 118 ~~~~~~~Y~~sK~a~~~~~~~la~e~-~~gi~v~~i~Pg~v~t~~~ 162 (199)
T PRK07578 118 PIPGGASAATVNGALEGFVKAAALEL-PRGIRINVVSPTVLTESLE 162 (199)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHc-cCCeEEEEEcCCcccCchh
Confidence 78899999999999999999999999 8899999999999999874
|
|
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-27 Score=232.65 Aligned_cols=219 Identities=19% Similarity=0.274 Sum_probs=181.8
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
+++++|+++||||+++||.+++++|+++|++|++++|+.++..+..+++.. ..+..+.+|+
T Consensus 3 ~~~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~-------------------~~~~~~~~D~ 63 (239)
T PRK12828 3 HSLQGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVPA-------------------DALRIGGIDL 63 (239)
T ss_pred CCCCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHhh-------------------cCceEEEeec
Confidence 357799999999999999999999999999999999998776665555432 2355678999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|.++++++++++.+.++++|++|||||... ..++.+.+.+++++.+++|+.+++.++++++|.|.++ +.++||++||
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~d~vi~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~iv~~sS 141 (239)
T PRK12828 64 VDPQAARRAVDEVNRQFGRLDALVNIAGAFV-WGTIADGDADTWDRMYGVNVKTTLNASKAALPALTAS-GGGRIVNIGA 141 (239)
T ss_pred CCHHHHHHHHHHHHHHhCCcCEEEECCcccC-cCChhhCCHHHHHHHHHhhchhHHHHHHHHHHHHHhc-CCCEEEEECc
Confidence 9999999999999999999999999999865 4667778999999999999999999999999999876 4689999998
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhcc
Q 010380 333 AGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVP 412 (512)
Q Consensus 333 ~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~ 412 (512)
. ....+.+....|+++|++++.+++.++.++.+.||+++++.||++.|++...... .+ .+.
T Consensus 142 ~-~~~~~~~~~~~y~~sk~a~~~~~~~~a~~~~~~~i~~~~i~pg~v~~~~~~~~~~-------------~~-----~~~ 202 (239)
T PRK12828 142 G-AALKAGPGMGAYAAAKAGVARLTEALAAELLDRGITVNAVLPSIIDTPPNRADMP-------------DA-----DFS 202 (239)
T ss_pred h-HhccCCCCcchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCcchhhcCC-------------ch-----hhh
Confidence 7 5666677888999999999999999999998889999999999999986422110 00 011
Q ss_pred ccccchhhhhhhhhcCChH
Q 010380 413 RIRVVKGSGKAINYLTPPR 431 (512)
Q Consensus 413 r~~~~~~va~~v~~L~s~~ 431 (512)
....+++++..+.+++.+.
T Consensus 203 ~~~~~~dva~~~~~~l~~~ 221 (239)
T PRK12828 203 RWVTPEQIAAVIAFLLSDE 221 (239)
T ss_pred cCCCHHHHHHHHHHHhCcc
Confidence 2345677777777777644
|
|
| >TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.4e-27 Score=231.41 Aligned_cols=230 Identities=25% Similarity=0.365 Sum_probs=184.9
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChh
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPA 256 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~ 256 (512)
+|++|||||+++||++++++|+++|++|++++|+.+..+.+.+++.. .+.++.++.+|++|++
T Consensus 1 ~~~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~-----------------~~~~~~~~~~D~~~~~ 63 (255)
T TIGR01963 1 GKTALVTGAASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATD-----------------AGGSVIYLVADVTKED 63 (255)
T ss_pred CCEEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-----------------cCCceEEEECCCCCHH
Confidence 47899999999999999999999999999999998877776665543 2457889999999999
Q ss_pred hHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCC
Q 010380 257 DVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSG 336 (512)
Q Consensus 257 sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~ 336 (512)
+++++++++.+.++++|++|||||... ..+..+.+.+++++++++|+.|++.+++.+++.|++. +.+++|++||. +.
T Consensus 64 ~~~~~~~~~~~~~~~~d~vi~~a~~~~-~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~-~~~~~v~~ss~-~~ 140 (255)
T TIGR01963 64 EIADMIAAAAAEFGGLDILVNNAGIQH-VAPIEEFPPEDWDRIIAIMLTSAFHTIRAALPHMKKQ-GWGRIINIASA-HG 140 (255)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCCCC-CCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCeEEEEEcch-hh
Confidence 999999999999999999999999876 4566778899999999999999999999999999876 46799999887 56
Q ss_pred CCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHH------Hh
Q 010380 337 GSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVAR------TL 410 (512)
Q Consensus 337 ~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~------~~ 410 (512)
..+.+....|+++|++++.+++.++.++.+.||+|+.++||++.|++......... .......+.... ..
T Consensus 141 ~~~~~~~~~y~~sk~a~~~~~~~~~~~~~~~~i~v~~i~pg~v~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 216 (255)
T TIGR01963 141 LVASPFKSAYVAAKHGLIGLTKVLALEVAAHGITVNAICPGYVRTPLVEKQIADQA----KTRGIPEEQVIREVMLPGQP 216 (255)
T ss_pred cCCCCCCchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccHHHHHHHHhhh----cccCCCchHHHHHHHHccCc
Confidence 67778889999999999999999999998889999999999999987432111000 000001111111 12
Q ss_pred ccccccchhhhhhhhhcCCh
Q 010380 411 VPRIRVVKGSGKAINYLTPP 430 (512)
Q Consensus 411 l~r~~~~~~va~~v~~L~s~ 430 (512)
...+..++|++.++.+++.+
T Consensus 217 ~~~~~~~~d~a~~~~~~~~~ 236 (255)
T TIGR01963 217 TKRFVTVDEVAETALFLASD 236 (255)
T ss_pred cccCcCHHHHHHHHHHHcCc
Confidence 23456678888888877754
|
This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. |
| >KOG1199 consensus Short-chain alcohol dehydrogenase/3-hydroxyacyl-CoA dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8e-29 Score=224.53 Aligned_cols=192 Identities=23% Similarity=0.312 Sum_probs=171.9
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
+.+|-+.+||||.+|+|++.|+.|+++|+.|++.+-...+.++..+++ +.++.+.+.|++
T Consensus 6 s~kglvalvtggasglg~ataerlakqgasv~lldlp~skg~~vakel--------------------g~~~vf~padvt 65 (260)
T KOG1199|consen 6 STKGLVALVTGGASGLGKATAERLAKQGASVALLDLPQSKGADVAKEL--------------------GGKVVFTPADVT 65 (260)
T ss_pred hhcCeeEEeecCcccccHHHHHHHHhcCceEEEEeCCcccchHHHHHh--------------------CCceEEeccccC
Confidence 457889999999999999999999999999999999888877776664 678999999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCC-----CCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-----CC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGF-----KPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQ-----PK 323 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~-----~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~-----~~ 323 (512)
++++++.++...+.+||++|.+|||||+...+ ..-...+.|++++++++|++|+|+++++....|-+. +.
T Consensus 66 sekdv~aala~ak~kfgrld~~vncagia~a~ktyn~~k~~~h~ledfqrvidvn~~gtfnvirl~aglmg~nepdq~gq 145 (260)
T KOG1199|consen 66 SEKDVRAALAKAKAKFGRLDALVNCAGIAYAFKTYNVQKKKHHDLEDFQRVIDVNVLGTFNVIRLGAGLMGENEPDQNGQ 145 (260)
T ss_pred cHHHHHHHHHHHHhhccceeeeeeccceeeeeeeeeecccccccHHHhhheeeeeeeeeeeeeeehhhhhcCCCCCCCCc
Confidence 99999999999999999999999999986522 223456789999999999999999999999999653 24
Q ss_pred CCeEEeecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccC
Q 010380 324 GGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLS 386 (512)
Q Consensus 324 ~g~IV~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~ 386 (512)
.|.|||..|. +.+.+..++++|++||.++.+++--+++++++.|||+++|.||.++|||...
T Consensus 146 rgviintasv-aafdgq~gqaaysaskgaivgmtlpiardla~~gir~~tiapglf~tpllss 207 (260)
T KOG1199|consen 146 RGVIINTASV-AAFDGQTGQAAYSASKGAIVGMTLPIARDLAGDGIRFNTIAPGLFDTPLLSS 207 (260)
T ss_pred ceEEEeecee-eeecCccchhhhhcccCceEeeechhhhhcccCceEEEeecccccCChhhhh
Confidence 6789999988 6788888999999999999999999999999999999999999999999754
|
|
| >PRK09135 pteridine reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-26 Score=226.23 Aligned_cols=226 Identities=25% Similarity=0.330 Sum_probs=179.4
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcCh-hhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 175 AGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSS-ESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 175 l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~-~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
..+++++||||++|||++++++|+++|++|++++|+. +..+...+++.+. .+..+.++.+|++
T Consensus 4 ~~~~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~----------------~~~~~~~~~~Dl~ 67 (249)
T PRK09135 4 DSAKVALITGGARRIGAAIARTLHAAGYRVAIHYHRSAAEADALAAELNAL----------------RPGSAAALQADLL 67 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhh----------------cCCceEEEEcCCC
Confidence 4678999999999999999999999999999999864 4444444444321 1245788999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
|++++.++++++.+.++++|+||||||... ..++.+.+.++++.++++|+.|++.+.+++.|.|.++ .+.++++++.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~d~vi~~ag~~~-~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~--~~~~~~~~~~ 144 (249)
T PRK09135 68 DPDALPELVAACVAAFGRLDALVNNASSFY-PTPLGSITEAQWDDLFASNLKAPFFLSQAAAPQLRKQ--RGAIVNITDI 144 (249)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCC-CCChhhCCHHHHHHHHHHhchhHHHHHHHHHHHHhhC--CeEEEEEeCh
Confidence 999999999999999999999999999866 4567778889999999999999999999999998764 5788888775
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhccc
Q 010380 334 GSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPR 413 (512)
Q Consensus 334 ~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~r 413 (512)
....+.++...|++||++++.+++.++.++.+ +|++++|.||++.||+........ .. .......++.+
T Consensus 145 -~~~~~~~~~~~Y~~sK~~~~~~~~~l~~~~~~-~i~~~~v~pg~~~~~~~~~~~~~~---~~------~~~~~~~~~~~ 213 (249)
T PRK09135 145 -HAERPLKGYPVYCAAKAALEMLTRSLALELAP-EVRVNAVAPGAILWPEDGNSFDEE---AR------QAILARTPLKR 213 (249)
T ss_pred -hhcCCCCCchhHHHHHHHHHHHHHHHHHHHCC-CCeEEEEEeccccCccccccCCHH---HH------HHHHhcCCcCC
Confidence 45667788899999999999999999999965 699999999999999853211100 00 11112223445
Q ss_pred cccchhhhhhhhhcCCh
Q 010380 414 IRVVKGSGKAINYLTPP 430 (512)
Q Consensus 414 ~~~~~~va~~v~~L~s~ 430 (512)
...++|+++++.+++.+
T Consensus 214 ~~~~~d~a~~~~~~~~~ 230 (249)
T PRK09135 214 IGTPEDIAEAVRFLLAD 230 (249)
T ss_pred CcCHHHHHHHHHHHcCc
Confidence 56778888888777753
|
|
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-27 Score=232.85 Aligned_cols=220 Identities=18% Similarity=0.212 Sum_probs=173.9
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChh-hHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSE-SVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~-~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
++++|+++||||++|||++++++|+++|++|++++|+.+ ..+...++++. .+.++.++.+|+
T Consensus 3 ~~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~-----------------~~~~~~~~~~D~ 65 (248)
T PRK07806 3 DLPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEA-----------------AGGRASAVGADL 65 (248)
T ss_pred CCCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHh-----------------cCCceEEEEcCC
Confidence 467899999999999999999999999999999999753 44444444433 235678899999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|+++++++++++.+.++++|++|||||... .. .. +++..+++|+.+++++++++.|.|.+ .++||++||
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~d~vi~~ag~~~-~~---~~---~~~~~~~vn~~~~~~l~~~~~~~~~~---~~~iv~isS 135 (248)
T PRK07806 66 TDEESVAALMDTAREEFGGLDALVLNASGGM-ES---GM---DEDYAMRLNRDAQRNLARAALPLMPA---GSRVVFVTS 135 (248)
T ss_pred CCHHHHHHHHHHHHHhCCCCcEEEECCCCCC-CC---CC---CcceeeEeeeHHHHHHHHHHHhhccC---CceEEEEeC
Confidence 9999999999999999999999999998643 11 11 24578899999999999999999853 478999988
Q ss_pred CCCCC----CCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHH--H
Q 010380 333 AGSGG----SSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPET--V 406 (512)
Q Consensus 333 ~~a~~----~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~--v 406 (512)
..... .+.+.+..|++||++++.+++.++.|+++.||+||+|.||++.|++........ .|+. .
T Consensus 136 ~~~~~~~~~~~~~~~~~Y~~sK~a~e~~~~~l~~~~~~~~i~v~~v~pg~~~~~~~~~~~~~~----------~~~~~~~ 205 (248)
T PRK07806 136 HQAHFIPTVKTMPEYEPVARSKRAGEDALRALRPELAEKGIGFVVVSGDMIEGTVTATLLNRL----------NPGAIEA 205 (248)
T ss_pred chhhcCccccCCccccHHHHHHHHHHHHHHHHHHHhhccCeEEEEeCCccccCchhhhhhccC----------CHHHHHH
Confidence 53322 234556789999999999999999999999999999999999998753211000 1111 1
Q ss_pred HHHhccccccchhhhhhhhhcCCh
Q 010380 407 ARTLVPRIRVVKGSGKAINYLTPP 430 (512)
Q Consensus 407 A~~~l~r~~~~~~va~~v~~L~s~ 430 (512)
.+.+.+++..|+|+++++.|++..
T Consensus 206 ~~~~~~~~~~~~dva~~~~~l~~~ 229 (248)
T PRK07806 206 RREAAGKLYTVSEFAAEVARAVTA 229 (248)
T ss_pred HHhhhcccCCHHHHHHHHHHHhhc
Confidence 234567888999999999999873
|
|
| >PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-26 Score=227.00 Aligned_cols=227 Identities=29% Similarity=0.417 Sum_probs=183.5
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhh-HHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 175 AGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSES-VRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 175 l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~-l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
+..|++|||||+++||.+++++|+++|++|+++.|+.++ .+...+.+.. .+.++.++.+|++
T Consensus 4 ~~~~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~D~~ 66 (249)
T PRK12825 4 LMGRVALVTGAARGLGRAIALRLARAGADVVVHYRSDEEAAEELVEAVEA-----------------LGRRAQAVQADVT 66 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHh-----------------cCCceEEEECCcC
Confidence 456899999999999999999999999998887766443 3333333332 2456889999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
|+++++++++++.+.++++|++|||||... ..++.+.+.+++++.+++|+.+++++++.++|.+.+. +.+++|++||.
T Consensus 67 ~~~~v~~~~~~~~~~~~~id~vi~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~~i~~SS~ 144 (249)
T PRK12825 67 DKAALEAAVAAAVERFGRIDILVNNAGIFE-DKPLADMSDDEWDEVIDVNLSGVFHLLRAVVPPMRKQ-RGGRIVNISSV 144 (249)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCccCC-CCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCCEEEEECcc
Confidence 999999999999888899999999999765 5677788999999999999999999999999999876 46799999987
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhccc
Q 010380 334 GSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPR 413 (512)
Q Consensus 334 ~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~r 413 (512)
....+.++...|+.+|++++++++.++.++.+.||++++|+||.+.|++......... .. . ....++.+
T Consensus 145 -~~~~~~~~~~~y~~sK~~~~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~~~~~~~~---~~-----~--~~~~~~~~ 213 (249)
T PRK12825 145 -AGLPGWPGRSNYAAAKAGLVGLTKALARELAEYGITVNMVAPGDIDTDMKEATIEEAR---EA-----K--DAETPLGR 213 (249)
T ss_pred -ccCCCCCCchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECCccCCccccccchhH---Hh-----h--hccCCCCC
Confidence 4566777888999999999999999999999889999999999999998643221110 00 0 00123445
Q ss_pred cccchhhhhhhhhcCChH
Q 010380 414 IRVVKGSGKAINYLTPPR 431 (512)
Q Consensus 414 ~~~~~~va~~v~~L~s~~ 431 (512)
...+++++..+.+++...
T Consensus 214 ~~~~~dva~~~~~~~~~~ 231 (249)
T PRK12825 214 SGTPEDIARAVAFLCSDA 231 (249)
T ss_pred CcCHHHHHHHHHHHhCcc
Confidence 667788888888887654
|
|
| >PRK08177 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.6e-27 Score=226.48 Aligned_cols=181 Identities=24% Similarity=0.296 Sum_probs=153.5
Q ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhh
Q 010380 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPAD 257 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~s 257 (512)
|+++||||++|||.++|++|+++|++|++++|+++..+++ .+ ..++.++.+|++|+++
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~----~~------------------~~~~~~~~~D~~d~~~ 59 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQDTAL----QA------------------LPGVHIEKLDMNDPAS 59 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCcchHHH----Hh------------------ccccceEEcCCCCHHH
Confidence 6899999999999999999999999999999998765432 11 1245678899999999
Q ss_pred HHHHHHHHHHHcCCCcccccccccCCC-CCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCC
Q 010380 258 VQKLSNFAVNEFGSIDIWINNAGTNKG-FKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSG 336 (512)
Q Consensus 258 v~~~~~~i~~~~g~IDvLInnAG~~~~-~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~ 336 (512)
++++++.+.+ +++|++|||||+..+ ..++.+.+.+++++.+++|+.+++.+++.++|.|++. .++|+++||.. +
T Consensus 60 ~~~~~~~~~~--~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~--~~~iv~~ss~~-g 134 (225)
T PRK08177 60 LDQLLQRLQG--QRFDLLFVNAGISGPAHQSAADATAAEIGQLFLTNAIAPIRLARRLLGQVRPG--QGVLAFMSSQL-G 134 (225)
T ss_pred HHHHHHHhhc--CCCCEEEEcCcccCCCCCCcccCCHHHHhhheeeeeeHHHHHHHHHHHhhhhc--CCEEEEEccCc-c
Confidence 9999988754 489999999998642 2457788999999999999999999999999999753 47899998863 3
Q ss_pred CC---CCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCccc
Q 010380 337 GS---STPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLL 385 (512)
Q Consensus 337 ~~---~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~ 385 (512)
.. +......|+++|++++.|++.++.|+.++||+||+|+||+++|++..
T Consensus 135 ~~~~~~~~~~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~i~PG~i~t~~~~ 186 (225)
T PRK08177 135 SVELPDGGEMPLYKASKAALNSMTRSFVAELGEPTLTVLSMHPGWVKTDMGG 186 (225)
T ss_pred ccccCCCCCccchHHHHHHHHHHHHHHHHHhhcCCeEEEEEcCCceecCCCC
Confidence 22 22356789999999999999999999999999999999999999864
|
|
| >PRK09291 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-26 Score=227.96 Aligned_cols=183 Identities=21% Similarity=0.326 Sum_probs=160.1
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChh
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPA 256 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~ 256 (512)
+|++|||||++|||++++++|+++|++|++++|+.+.+++..+.... .+.++.++.+|++|++
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~-----------------~~~~~~~~~~D~~~~~ 64 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAAR-----------------RGLALRVEKLDLTDAI 64 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-----------------cCCcceEEEeeCCCHH
Confidence 57899999999999999999999999999999998776555444332 2346888999999999
Q ss_pred hHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCC
Q 010380 257 DVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSG 336 (512)
Q Consensus 257 sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~ 336 (512)
+++++++ +++|+||||||... ..++.+.+.+++++.+++|+.+++.+++.+++.|.++ +.++||++||. .+
T Consensus 65 ~~~~~~~------~~id~vi~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~iv~~SS~-~~ 135 (257)
T PRK09291 65 DRAQAAE------WDVDVLLNNAGIGE-AGAVVDIPVELVRELFETNVFGPLELTQGFVRKMVAR-GKGKVVFTSSM-AG 135 (257)
T ss_pred HHHHHhc------CCCCEEEECCCcCC-CcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCceEEEEcCh-hh
Confidence 8877643 37999999999876 5788899999999999999999999999999999877 45899999987 56
Q ss_pred CCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCccc
Q 010380 337 GSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLL 385 (512)
Q Consensus 337 ~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~ 385 (512)
..+.++...|++||++++++++.++.++.+.||++++|+||++.|++..
T Consensus 136 ~~~~~~~~~Y~~sK~a~~~~~~~l~~~~~~~gi~~~~v~pg~~~t~~~~ 184 (257)
T PRK09291 136 LITGPFTGAYCASKHALEAIAEAMHAELKPFGIQVATVNPGPYLTGFND 184 (257)
T ss_pred ccCCCCcchhHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccccchh
Confidence 6667888899999999999999999999999999999999999999854
|
|
| >TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-26 Score=225.02 Aligned_cols=221 Identities=29% Similarity=0.473 Sum_probs=178.8
Q ss_pred EEEECCCChHHHHHHHHHHHCCCEEEEEEcCh-hhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhhH
Q 010380 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSS-ESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPADV 258 (512)
Q Consensus 180 vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~-~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~sv 258 (512)
+||||++++||.++|++|+++|++|++++|+. +.++...+++.+ .+.++.++.+|++|++++
T Consensus 1 vlItG~~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~-----------------~~~~~~~~~~D~~~~~~~ 63 (239)
T TIGR01830 1 ALVTGASRGIGRAIALKLAKEGAKVIITYRSSEEGAEEVVEELKA-----------------YGVKALGVVCDVSDREDV 63 (239)
T ss_pred CEEECCCcHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHh-----------------cCCceEEEEecCCCHHHH
Confidence 58999999999999999999999999999875 444444444433 345688999999999999
Q ss_pred HHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCC
Q 010380 259 QKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGS 338 (512)
Q Consensus 259 ~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~~~ 338 (512)
+++++.+.+.++++|++|||||... ..++.+.+.+++++.+++|+.+++.+++.+.+.+.+. +.+++|++||. ++..
T Consensus 64 ~~~~~~~~~~~~~id~vi~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~~v~~sS~-~~~~ 140 (239)
T TIGR01830 64 KAVVEEIEEELGPIDILVNNAGITR-DNLLMRMKEEDWDAVIDTNLTGVFNLTQAVLRIMIKQ-RSGRIINISSV-VGLM 140 (239)
T ss_pred HHHHHHHHHHhCCCCEEEECCCCCC-CCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCeEEEEECCc-cccC
Confidence 9999999999999999999999875 4567788899999999999999999999999999765 46799999987 4666
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhccccccch
Q 010380 339 STPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPRIRVVK 418 (512)
Q Consensus 339 ~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~r~~~~~ 418 (512)
+.+....|+++|++++.+++.|+.++...|+++++++||+++|++....... ... .........+...++
T Consensus 141 g~~~~~~y~~~k~a~~~~~~~l~~~~~~~g~~~~~i~pg~~~~~~~~~~~~~----~~~------~~~~~~~~~~~~~~~ 210 (239)
T TIGR01830 141 GNAGQANYAASKAGVIGFTKSLAKELASRNITVNAVAPGFIDTDMTDKLSEK----VKK------KILSQIPLGRFGTPE 210 (239)
T ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECCCCChhhhhcChH----HHH------HHHhcCCcCCCcCHH
Confidence 7788899999999999999999999998999999999999999875321110 000 001112244566778
Q ss_pred hhhhhhhhcCCh
Q 010380 419 GSGKAINYLTPP 430 (512)
Q Consensus 419 ~va~~v~~L~s~ 430 (512)
+++..+.+++.+
T Consensus 211 ~~a~~~~~~~~~ 222 (239)
T TIGR01830 211 EVANAVAFLASD 222 (239)
T ss_pred HHHHHHHHHhCc
Confidence 888887777754
|
This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis. |
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.8e-26 Score=223.81 Aligned_cols=188 Identities=18% Similarity=0.258 Sum_probs=160.9
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
|++++|+++||||++|||.++++.|+++|++|++++|++++++++.+++.+ ..+++++.||+
T Consensus 1 ~~~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~------------------~~~~~~~~~Dl 62 (238)
T PRK05786 1 MRLKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSK------------------YGNIHYVVGDV 62 (238)
T ss_pred CCcCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh------------------cCCeEEEECCC
Confidence 357889999999999999999999999999999999998877655444432 13578899999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|+++++++++++...++++|.+|+|+|... ..+.. +.+++++++++|+.+++.+.+.++|.|.+ ++++|++||
T Consensus 63 ~~~~~~~~~~~~~~~~~~~id~ii~~ag~~~-~~~~~--~~~~~~~~~~~n~~~~~~~~~~~~~~~~~---~~~iv~~ss 136 (238)
T PRK05786 63 SSTESARNVIEKAAKVLNAIDGLVVTVGGYV-EDTVE--EFSGLEEMLTNHIKIPLYAVNASLRFLKE---GSSIVLVSS 136 (238)
T ss_pred CCHHHHHHHHHHHHHHhCCCCEEEEcCCCcC-CCchH--HHHHHHHHHHHhchHHHHHHHHHHHHHhc---CCEEEEEec
Confidence 9999999999999888899999999999754 23333 33889999999999999999999999864 478999988
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcc
Q 010380 333 AGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLL 384 (512)
Q Consensus 333 ~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~ 384 (512)
......+.+....|++||++++.+++.++.++.+.||++++|+||++.|++.
T Consensus 137 ~~~~~~~~~~~~~Y~~sK~~~~~~~~~~~~~~~~~gi~v~~i~pg~v~~~~~ 188 (238)
T PRK05786 137 MSGIYKASPDQLSYAVAKAGLAKAVEILASELLGRGIRVNGIAPTTISGDFE 188 (238)
T ss_pred chhcccCCCCchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCccCCCCC
Confidence 7333345677788999999999999999999999999999999999999874
|
|
| >PRK08264 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.4e-26 Score=221.47 Aligned_cols=204 Identities=25% Similarity=0.351 Sum_probs=173.2
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEcc
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACD 251 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~D 251 (512)
+++.+++++||||++|||+++|++|+++|+ +|++++|+.+++++ .+.++.++.+|
T Consensus 2 ~~~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~------------------------~~~~~~~~~~D 57 (238)
T PRK08264 2 MDIKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTD------------------------LGPRVVPLQLD 57 (238)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhhh------------------------cCCceEEEEec
Confidence 457889999999999999999999999999 99999999765432 12468889999
Q ss_pred CCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeec
Q 010380 252 VCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD 331 (512)
Q Consensus 252 ltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vS 331 (512)
++|.++++++++. ++++|++|||||......++.+.+.+++++.+++|+.+++.+++++.|.|++. +.++||++|
T Consensus 58 ~~~~~~~~~~~~~----~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~~v~~s 132 (238)
T PRK08264 58 VTDPASVAAAAEA----ASDVTILVNNAGIFRTGSLLLEGDEDALRAEMETNYFGPLAMARAFAPVLAAN-GGGAIVNVL 132 (238)
T ss_pred CCCHHHHHHHHHh----cCCCCEEEECCCcCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCEEEEEc
Confidence 9999999887664 47899999999984435678889999999999999999999999999999876 578999999
Q ss_pred CCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhc
Q 010380 332 GAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLV 411 (512)
Q Consensus 332 S~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l 411 (512)
|. .+..+.++...|+++|++++++++.++.++.+.||+++++.||.++|++...... ...+++++++.++
T Consensus 133 S~-~~~~~~~~~~~y~~sK~a~~~~~~~l~~~~~~~~i~~~~v~pg~v~t~~~~~~~~---------~~~~~~~~a~~~~ 202 (238)
T PRK08264 133 SV-LSWVNFPNLGTYSASKAAAWSLTQALRAELAPQGTRVLGVHPGPIDTDMAAGLDA---------PKASPADVARQIL 202 (238)
T ss_pred Ch-hhccCCCCchHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeCCcccccccccCCc---------CCCCHHHHHHHHH
Confidence 87 5667778889999999999999999999999999999999999999998543211 1236788888777
Q ss_pred cccc
Q 010380 412 PRIR 415 (512)
Q Consensus 412 ~r~~ 415 (512)
..+.
T Consensus 203 ~~~~ 206 (238)
T PRK08264 203 DALE 206 (238)
T ss_pred HHHh
Confidence 5554
|
|
| >PRK08017 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-25 Score=221.11 Aligned_cols=183 Identities=27% Similarity=0.353 Sum_probs=161.5
Q ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhh
Q 010380 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPAD 257 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~s 257 (512)
|+++||||++|||.++++.|+++|++|++++|+.++++.. .+ ..+..+.||++|.++
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~~~~~----~~-------------------~~~~~~~~D~~~~~~ 59 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDVARM----NS-------------------LGFTGILLDLDDPES 59 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHhHHH----Hh-------------------CCCeEEEeecCCHHH
Confidence 6899999999999999999999999999999998765432 11 135678999999999
Q ss_pred HHHHHHHHHHHc-CCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCC
Q 010380 258 VQKLSNFAVNEF-GSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSG 336 (512)
Q Consensus 258 v~~~~~~i~~~~-g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~ 336 (512)
++++++.+.+.. +++|++|||||... ..++.+.+.+++++.+++|+.|++++++.++|.|++. +.++||++||. .+
T Consensus 60 ~~~~~~~i~~~~~~~~~~ii~~ag~~~-~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~-~~~~iv~~ss~-~~ 136 (256)
T PRK08017 60 VERAADEVIALTDNRLYGLFNNAGFGV-YGPLSTISRQQMEQQFSTNFFGTHQLTMLLLPAMLPH-GEGRIVMTSSV-MG 136 (256)
T ss_pred HHHHHHHHHHhcCCCCeEEEECCCCCC-ccchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhc-CCCEEEEEcCc-cc
Confidence 999999887654 68999999999866 4677888999999999999999999999999999876 46799999987 56
Q ss_pred CCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccC
Q 010380 337 GSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLS 386 (512)
Q Consensus 337 ~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~ 386 (512)
..+.++...|++||++++.++++++.++.+.||++++|+||++.|++...
T Consensus 137 ~~~~~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~ 186 (256)
T PRK08017 137 LISTPGRGAYAASKYALEAWSDALRMELRHSGIKVSLIEPGPIRTRFTDN 186 (256)
T ss_pred ccCCCCccHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEeCCCcccchhhc
Confidence 67788899999999999999999999999999999999999999998654
|
|
| >PRK12367 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.5e-26 Score=223.56 Aligned_cols=197 Identities=19% Similarity=0.193 Sum_probs=148.3
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
.++++|+++||||++|||+++|++|+++|++|++++|+..... ++. . ... ..++.+|+
T Consensus 10 ~~l~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~~~~~---~~~-~-----------------~~~-~~~~~~D~ 67 (245)
T PRK12367 10 STWQGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSKINNS---ESN-D-----------------ESP-NEWIKWEC 67 (245)
T ss_pred HhhCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCchhhh---hhh-c-----------------cCC-CeEEEeeC
Confidence 4578899999999999999999999999999999999863211 110 0 011 25688999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCC--CCCeEEee
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQP--KGGHIFNM 330 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~--~~g~IV~v 330 (512)
+|.+++.+ .++++|+||||||+.. ..+.+.++|++++++|+.|+++++++++|.|+++. +++.+++.
T Consensus 68 ~~~~~~~~-------~~~~iDilVnnAG~~~----~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~g~~iiv~ 136 (245)
T PRK12367 68 GKEESLDK-------QLASLDVLILNHGINP----GGRQDPENINKALEINALSSWRLLELFEDIALNNNSQIPKEIWVN 136 (245)
T ss_pred CCHHHHHH-------hcCCCCEEEECCccCC----cCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccCCCeEEEEE
Confidence 99987653 4578999999999753 34568899999999999999999999999997631 23334444
Q ss_pred cCCCCCCCCCCCcchhhHHHHHHHHHH---HHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHH
Q 010380 331 DGAGSGGSSTPLTAVYGSTKCGLRQLQ---ASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVA 407 (512)
Q Consensus 331 SS~~a~~~~~p~~~~Y~aSKaAl~~l~---~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA 407 (512)
+|. ++..+ ++.+.|++||+|+..+. +.++.|+.+.||+|++++||+++|++... ...+|+++|
T Consensus 137 ss~-a~~~~-~~~~~Y~aSKaal~~~~~l~~~l~~e~~~~~i~v~~~~pg~~~t~~~~~------------~~~~~~~vA 202 (245)
T PRK12367 137 TSE-AEIQP-ALSPSYEISKRLIGQLVSLKKNLLDKNERKKLIIRKLILGPFRSELNPI------------GIMSADFVA 202 (245)
T ss_pred ecc-cccCC-CCCchhHHHHHHHHHHHHHHHHHHHhhcccccEEEEecCCCcccccCcc------------CCCCHHHHH
Confidence 444 34333 46778999999986543 55555667889999999999999997311 123789999
Q ss_pred HHhcccccc
Q 010380 408 RTLVPRIRV 416 (512)
Q Consensus 408 ~~~l~r~~~ 416 (512)
+.++..+..
T Consensus 203 ~~i~~~~~~ 211 (245)
T PRK12367 203 KQILDQANL 211 (245)
T ss_pred HHHHHHHhc
Confidence 988766643
|
|
| >COG0623 FabI Enoyl-[acyl-carrier-protein] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.2e-25 Score=208.21 Aligned_cols=244 Identities=17% Similarity=0.197 Sum_probs=205.9
Q ss_pred CCCCCEEEEECCC--ChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEcc
Q 010380 174 KAGPRNVVITGST--RGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACD 251 (512)
Q Consensus 174 ~l~gk~vLVTGas--sGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~D 251 (512)
.++||++||+|-. +.|+..||+.|.++|++++++..++ +++.-++++.+.. .....++||
T Consensus 3 ~L~GK~~lI~Gvan~rSIAwGIAk~l~~~GAeL~fTy~~e-~l~krv~~la~~~-----------------~s~~v~~cD 64 (259)
T COG0623 3 LLEGKRILIMGVANNRSIAWGIAKALAEQGAELAFTYQGE-RLEKRVEELAEEL-----------------GSDLVLPCD 64 (259)
T ss_pred ccCCceEEEEEecccccHHHHHHHHHHHcCCEEEEEeccH-HHHHHHHHHHhhc-----------------cCCeEEecC
Confidence 5799999999974 7999999999999999999999887 6666666665532 235579999
Q ss_pred CCChhhHHHHHHHHHHHcCCCcccccccccCCC---CCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEE
Q 010380 252 VCEPADVQKLSNFAVNEFGSIDIWINNAGTNKG---FKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIF 328 (512)
Q Consensus 252 ltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~---~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV 328 (512)
+++.++++++++++.+++|.+|+|||+-|..+. .+.+.+++.|.|...+++..++...++|++.|.|.+ +|.||
T Consensus 65 V~~d~~i~~~f~~i~~~~g~lD~lVHsIaFa~k~el~G~~~dtsre~f~~a~~IS~YS~~~lak~a~~lM~~---ggSil 141 (259)
T COG0623 65 VTNDESIDALFATIKKKWGKLDGLVHSIAFAPKEELKGDYLDTSREGFLIAMDISAYSFTALAKAARPLMNN---GGSIL 141 (259)
T ss_pred CCCHHHHHHHHHHHHHhhCcccEEEEEeccCChHHhCCcccccCHHHHHhHhhhhHhhHHHHHHHHHHhcCC---CCcEE
Confidence 999999999999999999999999999998651 356778999999999999999999999999999974 68999
Q ss_pred eecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHH
Q 010380 329 NMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVAR 408 (512)
Q Consensus 329 ~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~ 408 (512)
.++=. .+....|.+..-+.+|++|++-+|.||.++++.|||||.|+-|+|+|=-. ..... ...+. .+.-.+
T Consensus 142 tLtYl-gs~r~vPnYNvMGvAKAaLEasvRyLA~dlG~~gIRVNaISAGPIrTLAa-sgI~~-f~~~l------~~~e~~ 212 (259)
T COG0623 142 TLTYL-GSERVVPNYNVMGVAKAALEASVRYLAADLGKEGIRVNAISAGPIRTLAA-SGIGD-FRKML------KENEAN 212 (259)
T ss_pred EEEec-cceeecCCCchhHHHHHHHHHHHHHHHHHhCccCeEEeeecccchHHHHh-hcccc-HHHHH------HHHHhh
Confidence 99765 45677888889999999999999999999999999999999999999432 22211 11121 234456
Q ss_pred HhccccccchhhhhhhhhcCChHHHHHHHHHHhccCccc
Q 010380 409 TLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWF 447 (512)
Q Consensus 409 ~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~ 447 (512)
.+++|-.+.|+|+++..||+|+...-.++.....|+++-
T Consensus 213 aPl~r~vt~eeVG~tA~fLlSdLssgiTGei~yVD~G~~ 251 (259)
T COG0623 213 APLRRNVTIEEVGNTAAFLLSDLSSGITGEIIYVDSGYH 251 (259)
T ss_pred CCccCCCCHHHhhhhHHHHhcchhcccccceEEEcCCce
Confidence 789999999999999999999999888888888887763
|
|
| >PRK06953 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.2e-24 Score=208.00 Aligned_cols=179 Identities=21% Similarity=0.340 Sum_probs=146.7
Q ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhh
Q 010380 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPAD 257 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~s 257 (512)
|+++||||++|||.+++++|+++|++|++++|+.+++++ +.. ..+.++.+|++|.++
T Consensus 2 ~~vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~~~~~~~----~~~-------------------~~~~~~~~D~~~~~~ 58 (222)
T PRK06953 2 KTVLIVGASRGIGREFVRQYRADGWRVIATARDAAALAA----LQA-------------------LGAEALALDVADPAS 58 (222)
T ss_pred ceEEEEcCCCchhHHHHHHHHhCCCEEEEEECCHHHHHH----HHh-------------------ccceEEEecCCCHHH
Confidence 679999999999999999999999999999999765543 221 124578999999999
Q ss_pred HHHHHHHHHHHcCCCcccccccccCCC-CCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCC
Q 010380 258 VQKLSNFAVNEFGSIDIWINNAGTNKG-FKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSG 336 (512)
Q Consensus 258 v~~~~~~i~~~~g~IDvLInnAG~~~~-~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~ 336 (512)
++++++++.. +++|++|||||.... ..+..+.+.+++++.+++|+.+++.++++++|.|.+. .+++++++|.. +
T Consensus 59 v~~~~~~~~~--~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~--~g~iv~isS~~-~ 133 (222)
T PRK06953 59 VAGLAWKLDG--EALDAAVYVAGVYGPRTEGVEPITREDFDAVMHTNVLGPMQLLPILLPLVEAA--GGVLAVLSSRM-G 133 (222)
T ss_pred HHHHHHHhcC--CCCCEEEECCCcccCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHhhhcc--CCeEEEEcCcc-c
Confidence 9998876632 479999999998631 2456677999999999999999999999999998653 57899998863 3
Q ss_pred CCCCCC---cchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccC
Q 010380 337 GSSTPL---TAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLS 386 (512)
Q Consensus 337 ~~~~p~---~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~ 386 (512)
..+... ...|+++|++++.+++.++.++. +++||+|+||+++|++..+
T Consensus 134 ~~~~~~~~~~~~Y~~sK~a~~~~~~~~~~~~~--~i~v~~v~Pg~i~t~~~~~ 184 (222)
T PRK06953 134 SIGDATGTTGWLYRASKAALNDALRAASLQAR--HATCIALHPGWVRTDMGGA 184 (222)
T ss_pred ccccccCCCccccHHhHHHHHHHHHHHhhhcc--CcEEEEECCCeeecCCCCC
Confidence 333221 23699999999999999999874 7999999999999998643
|
|
| >PRK12428 3-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.2e-25 Score=218.30 Aligned_cols=203 Identities=19% Similarity=0.194 Sum_probs=157.7
Q ss_pred HHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhhHHHHHHHHHHHcCCC
Q 010380 193 LAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSI 272 (512)
Q Consensus 193 iA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~sv~~~~~~i~~~~g~I 272 (512)
+|++|+++|++|++++|+.++.+ + ..+++||++|.++++++++++. +++
T Consensus 1 ~a~~l~~~G~~Vv~~~r~~~~~~-----~-----------------------~~~~~~Dl~~~~~v~~~~~~~~---~~i 49 (241)
T PRK12428 1 TARLLRFLGARVIGVDRREPGMT-----L-----------------------DGFIQADLGDPASIDAAVAALP---GRI 49 (241)
T ss_pred ChHHHHhCCCEEEEEeCCcchhh-----h-----------------------hHhhcccCCCHHHHHHHHHHhc---CCC
Confidence 47899999999999999876531 0 1237899999999999988763 689
Q ss_pred cccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCCC---------------
Q 010380 273 DIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGG--------------- 337 (512)
Q Consensus 273 DvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~~--------------- 337 (512)
|+||||||+.. . +++++++++|+.+++.+++.++|.|.+ .|+||++||..+..
T Consensus 50 D~li~nAG~~~-~--------~~~~~~~~vN~~~~~~l~~~~~~~~~~---~g~Iv~isS~~~~~~~~~~~~~~~~~~~~ 117 (241)
T PRK12428 50 DALFNIAGVPG-T--------APVELVARVNFLGLRHLTEALLPRMAP---GGAIVNVASLAGAEWPQRLELHKALAATA 117 (241)
T ss_pred eEEEECCCCCC-C--------CCHHHhhhhchHHHHHHHHHHHHhccC---CcEEEEeCcHHhhccccchHHHHhhhccc
Confidence 99999999753 1 358899999999999999999999964 47999999873321
Q ss_pred -----------CCCCCcchhhHHHHHHHHHHHHHH-HHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHH
Q 010380 338 -----------SSTPLTAVYGSTKCGLRQLQASLF-KESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPET 405 (512)
Q Consensus 338 -----------~~~p~~~~Y~aSKaAl~~l~~sLa-~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~ 405 (512)
.+.++...|++||+|+++|++.++ .|++++||+||+|+||+|+|+|............ .+.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~e~~~~girvn~v~PG~v~T~~~~~~~~~~~~~~-------~~~ 190 (241)
T PRK12428 118 SFDEGAAWLAAHPVALATGYQLSKEALILWTMRQAQPWFGARGIRVNCVAPGPVFTPILGDFRSMLGQER-------VDS 190 (241)
T ss_pred hHHHHHHhhhccCCCcccHHHHHHHHHHHHHHHHHHHhhhccCeEEEEeecCCccCcccccchhhhhhHh-------hhh
Confidence 355677899999999999999999 9999999999999999999998644211100000 001
Q ss_pred HHHHhccccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 406 VARTLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 406 vA~~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
...+++++..|+++++.+.||+++...+.++..+..+|++
T Consensus 191 -~~~~~~~~~~pe~va~~~~~l~s~~~~~~~G~~i~vdgg~ 230 (241)
T PRK12428 191 -DAKRMGRPATADEQAAVLVFLCSDAARWINGVNLPVDGGL 230 (241)
T ss_pred -cccccCCCCCHHHHHHHHHHHcChhhcCccCcEEEecCch
Confidence 1235677889999999999999987666666555555554
|
|
| >PRK08219 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-23 Score=203.49 Aligned_cols=177 Identities=26% Similarity=0.434 Sum_probs=152.6
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChh
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPA 256 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~ 256 (512)
.|+++||||+++||++++++|+++ ++|++++|+.++.++..++. ..+.++.+|++|++
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~-~~V~~~~r~~~~~~~~~~~~---------------------~~~~~~~~D~~~~~ 60 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT-HTLLLGGRPAERLDELAAEL---------------------PGATPFPVDLTDPE 60 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh-CCEEEEeCCHHHHHHHHHHh---------------------ccceEEecCCCCHH
Confidence 478999999999999999999999 99999999976654332211 24677899999999
Q ss_pred hHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCC
Q 010380 257 DVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSG 336 (512)
Q Consensus 257 sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~ 336 (512)
+++++++.+ +++|++||+||... ..++.+.+.+++++.+++|+.+++.+++.+++.|+++ .+++|++||. .+
T Consensus 61 ~~~~~~~~~----~~id~vi~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~~~~v~~ss~-~~ 132 (227)
T PRK08219 61 AIAAAVEQL----GRLDVLVHNAGVAD-LGPVAESTVDEWRATLEVNVVAPAELTRLLLPALRAA--HGHVVFINSG-AG 132 (227)
T ss_pred HHHHHHHhc----CCCCEEEECCCcCC-CCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC--CCeEEEEcch-Hh
Confidence 988877643 58999999999876 4667788999999999999999999999999999875 5789999987 56
Q ss_pred CCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcc
Q 010380 337 GSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLL 384 (512)
Q Consensus 337 ~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~ 384 (512)
..+.++...|+.+|++++.+++.++.++... |++++|.||.+.|++.
T Consensus 133 ~~~~~~~~~y~~~K~a~~~~~~~~~~~~~~~-i~~~~i~pg~~~~~~~ 179 (227)
T PRK08219 133 LRANPGWGSYAASKFALRALADALREEEPGN-VRVTSVHPGRTDTDMQ 179 (227)
T ss_pred cCcCCCCchHHHHHHHHHHHHHHHHHHhcCC-ceEEEEecCCccchHh
Confidence 6677888999999999999999999998866 9999999999998864
|
|
| >PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.3e-23 Score=216.68 Aligned_cols=196 Identities=19% Similarity=0.205 Sum_probs=150.5
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
+++++|+++||||++|||+++|++|+++|++|++++|+++++++. +.+ ....+..+.+|+
T Consensus 174 ~sl~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~~~l~~~---~~~-----------------~~~~v~~v~~Dv 233 (406)
T PRK07424 174 LSLKGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNSDKITLE---ING-----------------EDLPVKTLHWQV 233 (406)
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH---Hhh-----------------cCCCeEEEEeeC
Confidence 456899999999999999999999999999999999987655322 111 112466789999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCC---CCeEEe
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPK---GGHIFN 329 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~---~g~IV~ 329 (512)
+|++++.+. ++++|++|||||+.. ..+.+.|++++++++|+.|++.++++++|.|++++. ++.+|+
T Consensus 234 sd~~~v~~~-------l~~IDiLInnAGi~~----~~~~s~e~~~~~~~vNv~g~i~Li~a~lp~m~~~~~~~~~~iiVn 302 (406)
T PRK07424 234 GQEAALAEL-------LEKVDILIINHGINV----HGERTPEAINKSYEVNTFSAWRLMELFFTTVKTNRDKATKEVWVN 302 (406)
T ss_pred CCHHHHHHH-------hCCCCEEEECCCcCC----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEE
Confidence 999887553 358999999999754 246788999999999999999999999999987632 245666
Q ss_pred ecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHH
Q 010380 330 MDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVART 409 (512)
Q Consensus 330 vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~ 409 (512)
+|+. .. ..+..+.|++||+|+.+|+. ++++. .++.|..+.||+++|++... ...+||++|+.
T Consensus 303 ~Ssa--~~-~~~~~~~Y~ASKaAl~~l~~-l~~~~--~~~~I~~i~~gp~~t~~~~~------------~~~spe~vA~~ 364 (406)
T PRK07424 303 TSEA--EV-NPAFSPLYELSKRALGDLVT-LRRLD--APCVVRKLILGPFKSNLNPI------------GVMSADWVAKQ 364 (406)
T ss_pred Eccc--cc-cCCCchHHHHHHHHHHHHHH-HHHhC--CCCceEEEEeCCCcCCCCcC------------CCCCHHHHHHH
Confidence 6543 32 33456789999999999984 55543 35777888999999987311 12379999999
Q ss_pred hccccccc
Q 010380 410 LVPRIRVV 417 (512)
Q Consensus 410 ~l~r~~~~ 417 (512)
++..+...
T Consensus 365 il~~i~~~ 372 (406)
T PRK07424 365 ILKLAKRD 372 (406)
T ss_pred HHHHHHCC
Confidence 88766543
|
|
| >KOG1204 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.8e-24 Score=201.43 Aligned_cols=191 Identities=19% Similarity=0.210 Sum_probs=154.4
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCCh
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEP 255 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~ 255 (512)
.+|++||||+|+|||..++..+..++......+++....+ .+.++ ...+........|++..
T Consensus 5 ~r~villTGaSrgiG~~~v~~i~aed~e~~r~g~~r~~a~--~~~L~----------------v~~gd~~v~~~g~~~e~ 66 (253)
T KOG1204|consen 5 MRKVILLTGASRGIGTGSVATILAEDDEALRYGVARLLAE--LEGLK----------------VAYGDDFVHVVGDITEE 66 (253)
T ss_pred cceEEEEecCCCCccHHHHHHHHhcchHHHHHhhhccccc--ccceE----------------EEecCCcceechHHHHH
Confidence 3678999999999999999888887754443333322211 01110 01233444566788888
Q ss_pred hhHHHHHHHHHHHcCCCcccccccccCCCCCCCc--CCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 256 ADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLL--QFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 256 ~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~--~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
.-+.++++..+++++..|++|||||...+..... ..+.++|++.++.|+++.+.+.+.++|.+++++-.+.+||+||.
T Consensus 67 ~~l~al~e~~r~k~gkr~iiI~NAG~lgdvsk~~~~~~D~~qw~ky~~~NlfS~VsL~~~~l~~lk~~p~~~~vVnvSS~ 146 (253)
T KOG1204|consen 67 QLLGALREAPRKKGGKRDIIIHNAGSLGDVSKGAVDLGDSDQWKKYWDLNLFSMVSLVQWALPKLKKSPVNGNVVNVSSL 146 (253)
T ss_pred HHHHHHHhhhhhcCCceeEEEecCCCccchhhccCCcccHHHHHHHHHhhhhhHHhhHHHHHHHhcCCCccCeEEEecch
Confidence 8888999999999999999999999876544444 77889999999999999999999999999987556899999987
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccC
Q 010380 334 GSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLS 386 (512)
Q Consensus 334 ~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~ 386 (512)
+...|.+++++||++|+|.++|.+.||.|-. .+|+|.+++||.|+|+|...
T Consensus 147 -aav~p~~~wa~yc~~KaAr~m~f~~lA~EEp-~~v~vl~~aPGvvDT~mq~~ 197 (253)
T KOG1204|consen 147 -AAVRPFSSWAAYCSSKAARNMYFMVLASEEP-FDVRVLNYAPGVVDTQMQVC 197 (253)
T ss_pred -hhhccccHHHHhhhhHHHHHHHHHHHhhcCc-cceeEEEccCCcccchhHHH
Confidence 7889999999999999999999999999976 79999999999999999643
|
|
| >TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.1e-22 Score=247.79 Aligned_cols=190 Identities=17% Similarity=0.077 Sum_probs=157.4
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHC-CCEEEEEEcChh--------------hHHHHH----------------------
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLS-GDRVVVASRSSE--------------SVRMTV---------------------- 218 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~-Ga~Vvl~~R~~~--------------~l~~~~---------------------- 218 (512)
+++++|||||++|||+++|++|+++ |++|++++|+.. .++...
T Consensus 1996 ~g~vvLVTGGarGIG~aiA~~LA~~~ga~viL~gRs~~~~~~p~~a~~~~~~~lk~~~~~~l~~~g~~~~P~~i~~~~~~ 2075 (2582)
T TIGR02813 1996 SDDVFLVTGGAKGVTFECALELAKQCQAHFILAGRSSFDDNEPSWAQGKDENELKKAAIQHLQASGEKPTPKKVDALVRP 2075 (2582)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHhcCCEEEEEeCCcccccCchhhhccchHHHHHhhhhhhhhcccccccchhhhcccc
Confidence 5899999999999999999999998 699999999821 111000
Q ss_pred ----HHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHH
Q 010380 219 ----TELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNE 294 (512)
Q Consensus 219 ----~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e 294 (512)
.++.+.... ....+.++.++.||++|.++++++++++.+. ++||+||||||+.. ...+.+.+.+
T Consensus 2076 ~~~~~ei~~~la~----------l~~~G~~v~y~~~DVtD~~av~~av~~v~~~-g~IDgVVhnAGv~~-~~~i~~~t~e 2143 (2582)
T TIGR02813 2076 VLSSLEIAQALAA----------FKAAGASAEYASADVTNSVSVAATVQPLNKT-LQITGIIHGAGVLA-DKHIQDKTLE 2143 (2582)
T ss_pred cchhHHHHHHHHH----------HHhcCCcEEEEEccCCCHHHHHHHHHHHHHh-CCCcEEEECCccCC-CCCcccCCHH
Confidence 000000000 0113568899999999999999999999877 68999999999987 6889999999
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEE
Q 010380 295 EIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTA 374 (512)
Q Consensus 295 ~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V 374 (512)
+|+++|++|+.|.+++++++.+.+. ++||++||. ++..+.++++.|+++|++++.+++.++.++. +++|++|
T Consensus 2144 ~f~~v~~~nv~G~~~Ll~al~~~~~-----~~IV~~SSv-ag~~G~~gqs~YaaAkaaL~~la~~la~~~~--~irV~sI 2215 (2582)
T TIGR02813 2144 EFNAVYGTKVDGLLSLLAALNAENI-----KLLALFSSA-AGFYGNTGQSDYAMSNDILNKAALQLKALNP--SAKVMSF 2215 (2582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC-----CeEEEEech-hhcCCCCCcHHHHHHHHHHHHHHHHHHHHcC--CcEEEEE
Confidence 9999999999999999999877543 479999998 6788889999999999999999999999985 4999999
Q ss_pred eCCcccCCccc
Q 010380 375 SPGMVLTDLLL 385 (512)
Q Consensus 375 ~PG~V~T~~~~ 385 (512)
+||+++|+|..
T Consensus 2216 ~wG~wdtgm~~ 2226 (2582)
T TIGR02813 2216 NWGPWDGGMVN 2226 (2582)
T ss_pred ECCeecCCccc
Confidence 99999999864
|
Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD. |
| >smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-21 Score=179.12 Aligned_cols=175 Identities=23% Similarity=0.229 Sum_probs=146.5
Q ss_pred CEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcChhhHHHHH---HHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 178 RNVVITGSTRGLGKALAREFLLSGD-RVVVASRSSESVRMTV---TELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~~~l~~~~---~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
|+++||||++|||++++++|+++|+ .|++++|+++..+... +++++ .+.++.++.+|++
T Consensus 1 ~~~li~Ga~~~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~D~~ 63 (180)
T smart00822 1 GTYLITGGLGGLGLELARWLAERGARHLVLLSRSGPDAPGAAELLAELEA-----------------LGAEVTVVACDVA 63 (180)
T ss_pred CEEEEEcCCChHHHHHHHHHHHhhCCeEEEEeCCCCCCccHHHHHHHHHh-----------------cCCeEEEEECCCC
Confidence 5789999999999999999999997 6888888865543332 22222 3467888999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
++++++++++.+...++++|++|||||... ..++.+.+.+++++++++|+.+++.+.+.+.+ . +.+++|++||.
T Consensus 64 ~~~~~~~~~~~~~~~~~~id~li~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~----~-~~~~ii~~ss~ 137 (180)
T smart00822 64 DRAALAAALAAIPARLGPLRGVIHAAGVLD-DGLLANLTPERFAAVLAPKVDGAWNLHELTRD----L-PLDFFVLFSSV 137 (180)
T ss_pred CHHHHHHHHHHHHHHcCCeeEEEEccccCC-ccccccCCHHHHHHhhchHhHHHHHHHHHhcc----C-CcceEEEEccH
Confidence 999999999999888999999999999875 46678889999999999999999999998833 2 45789999987
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCccc
Q 010380 334 GSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVL 380 (512)
Q Consensus 334 ~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~ 380 (512)
.+..+.++...|+++|+++..+++.++. .|+++.++.||+++
T Consensus 138 -~~~~~~~~~~~y~~sk~~~~~~~~~~~~----~~~~~~~~~~g~~~ 179 (180)
T smart00822 138 -AGVLGNPGQANYAAANAFLDALAAHRRA----RGLPATSINWGAWA 179 (180)
T ss_pred -HHhcCCCCchhhHHHHHHHHHHHHHHHh----cCCceEEEeecccc
Confidence 5666778889999999999999977654 47889999999875
|
It uses NADPH to reduce the keto group to a hydroxy group. |
| >KOG1478 consensus 3-keto sterol reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-20 Score=180.51 Aligned_cols=196 Identities=19% Similarity=0.232 Sum_probs=168.1
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-----EEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEcc
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSGD-----RVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACD 251 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~Ga-----~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~D 251 (512)
.|+++|||+++|||+++|++|++... +|++++|+.++++++.+.+++.+++ ...++.++.+|
T Consensus 3 RKvalITGanSglGl~i~~RLl~~~De~~~ltl~ltcR~~~kae~vc~~lk~f~p~-------------~~i~~~yvlvD 69 (341)
T KOG1478|consen 3 RKVALITGANSGLGLAICKRLLAEDDENVRLTLCLTCRNMSKAEAVCAALKAFHPK-------------STIEVTYVLVD 69 (341)
T ss_pred ceEEEEecCCCcccHHHHHHHHhccCCceeEEEEEEeCChhHHHHHHHHHHHhCCC-------------ceeEEEEEEEe
Confidence 58999999999999999999997653 5888999999999999999987664 34689999999
Q ss_pred CCChhhHHHHHHHHHHHcCCCcccccccccCCCCC-------------C-------------CcCCCHHHHHHHHHhhhh
Q 010380 252 VCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFK-------------P-------------LLQFTNEEIEQIVSTNLV 305 (512)
Q Consensus 252 ltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~-------------~-------------~~~~s~e~~~~~~~vNv~ 305 (512)
+++..++.++..++.++|.++|.+..|||++.-++ + ....+.|++..+|++|++
T Consensus 70 ~sNm~Sv~~A~~di~~rf~~ld~iylNAg~~~~~gi~w~~avf~~fsnpv~amt~pt~~~~t~G~is~D~lg~iFetnVF 149 (341)
T KOG1478|consen 70 VSNMQSVFRASKDIKQRFQRLDYIYLNAGIMPNPGINWKAAVFGLFSNPVIAMTSPTEGLLTQGKISADGLGEIFETNVF 149 (341)
T ss_pred hhhHHHHHHHHHHHHHHhhhccEEEEccccCCCCcccHHHHHHHHhhchhHHhcCchhhhhhcceecccchhhHhhhccc
Confidence 99999999999999999999999999999875211 0 123477999999999999
Q ss_pred hHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCC--------CCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCC
Q 010380 306 GSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSS--------TPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPG 377 (512)
Q Consensus 306 g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~~~~--------~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG 377 (512)
|+|.+.+.+.|++-.++ ...+|.+||..+.... ..+...|..||.+++.+.-++.+.+.+.|+.-++++||
T Consensus 150 Ghfyli~~l~pll~~~~-~~~lvwtSS~~a~kk~lsleD~q~~kg~~pY~sSKrl~DlLh~A~~~~~~~~g~~qyvv~pg 228 (341)
T KOG1478|consen 150 GHFYLIRELEPLLCHSD-NPQLVWTSSRMARKKNLSLEDFQHSKGKEPYSSSKRLTDLLHVALNRNFKPLGINQYVVQPG 228 (341)
T ss_pred chhhhHhhhhhHhhcCC-CCeEEEEeecccccccCCHHHHhhhcCCCCcchhHHHHHHHHHHHhccccccchhhhcccCc
Confidence 99999999999998763 4489999987443322 24567899999999999999999999999999999999
Q ss_pred cccCCcccC
Q 010380 378 MVLTDLLLS 386 (512)
Q Consensus 378 ~V~T~~~~~ 386 (512)
..-|.+...
T Consensus 229 ~~tt~~~~~ 237 (341)
T KOG1478|consen 229 IFTTNSFSE 237 (341)
T ss_pred eeecchhhh
Confidence 999998754
|
|
| >PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.3e-20 Score=172.99 Aligned_cols=174 Identities=23% Similarity=0.274 Sum_probs=136.1
Q ss_pred EEEEECCCChHHHHHHHHHHHCCC-EEEEEEcCh---hhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCC
Q 010380 179 NVVITGSTRGLGKALAREFLLSGD-RVVVASRSS---ESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCE 254 (512)
Q Consensus 179 ~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~---~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd 254 (512)
++|||||.+|||..++++|+++|. +|++++|+. ...++..+++++ .+.++.++.||++|
T Consensus 2 tylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~-----------------~g~~v~~~~~Dv~d 64 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELES-----------------AGARVEYVQCDVTD 64 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHH-----------------TT-EEEEEE--TTS
T ss_pred EEEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHh-----------------CCCceeeeccCccC
Confidence 689999999999999999999996 899999993 234456666665 56899999999999
Q ss_pred hhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCC
Q 010380 255 PADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAG 334 (512)
Q Consensus 255 ~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~ 334 (512)
+++++++++.+.+++++||++||+||... ..++.+.+.++++.+++..+.|..++.+.+.+. .-..+|++||.
T Consensus 65 ~~~v~~~~~~~~~~~~~i~gVih~ag~~~-~~~~~~~t~~~~~~~~~~Kv~g~~~L~~~~~~~-----~l~~~i~~SSi- 137 (181)
T PF08659_consen 65 PEAVAAALAQLRQRFGPIDGVIHAAGVLA-DAPIQDQTPDEFDAVLAPKVRGLWNLHEALENR-----PLDFFILFSSI- 137 (181)
T ss_dssp HHHHHHHHHTSHTTSS-EEEEEE--------B-GCC--HHHHHHHHHHHHHHHHHHHHHHTTT-----TTSEEEEEEEH-
T ss_pred HHHHHHHHHHHHhccCCcceeeeeeeeec-ccccccCCHHHHHHHHhhhhhHHHHHHHHhhcC-----CCCeEEEECCh-
Confidence 99999999999999999999999999987 689999999999999999999999998887551 34588999988
Q ss_pred CCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCccc
Q 010380 335 SGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVL 380 (512)
Q Consensus 335 a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~ 380 (512)
++..+.++++.|+++++.++.|++..+.. |..+.+|+-|..+
T Consensus 138 s~~~G~~gq~~YaaAN~~lda~a~~~~~~----g~~~~sI~wg~W~ 179 (181)
T PF08659_consen 138 SSLLGGPGQSAYAAANAFLDALARQRRSR----GLPAVSINWGAWD 179 (181)
T ss_dssp HHHTT-TTBHHHHHHHHHHHHHHHHHHHT----TSEEEEEEE-EBS
T ss_pred hHhccCcchHhHHHHHHHHHHHHHHHHhC----CCCEEEEEccccC
Confidence 67889999999999999999999876653 6778888877653
|
It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B .... |
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.8e-19 Score=190.87 Aligned_cols=218 Identities=15% Similarity=0.147 Sum_probs=155.9
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
...||+++||||+||||++++++|+++|++|++++|+.++++.+.+++.+.... ..+ .....++.++.+|++
T Consensus 77 ~~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~---~~G-----a~~~~~v~iV~gDLt 148 (576)
T PLN03209 77 TKDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLD---VEG-----TQPVEKLEIVECDLE 148 (576)
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccc---ccc-----ccccCceEEEEecCC
Confidence 457899999999999999999999999999999999998887766655431000 000 001235889999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
|.+++.+. ++++|+||||+|... . ...++...+++|+.|..++++++... +.++||++||.
T Consensus 149 D~esI~~a-------LggiDiVVn~AG~~~--~-----~v~d~~~~~~VN~~Gt~nLl~Aa~~a-----gVgRIV~VSSi 209 (576)
T PLN03209 149 KPDQIGPA-------LGNASVVICCIGASE--K-----EVFDVTGPYRIDYLATKNLVDAATVA-----KVNHFILVTSL 209 (576)
T ss_pred CHHHHHHH-------hcCCCEEEEcccccc--c-----cccchhhHHHHHHHHHHHHHHHHHHh-----CCCEEEEEccc
Confidence 99887653 468999999999753 1 11247788999999999998887543 45799999998
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhccc
Q 010380 334 GSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPR 413 (512)
Q Consensus 334 ~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~r 413 (512)
+....+.+.. .|. +|+++..+.+.+..++...||++++|+||++.|++...... ..+ . .. .....+++
T Consensus 210 ga~~~g~p~~-~~~-sk~~~~~~KraaE~~L~~sGIrvTIVRPG~L~tp~d~~~~t---~~v---~-~~---~~d~~~gr 277 (576)
T PLN03209 210 GTNKVGFPAA-ILN-LFWGVLCWKRKAEEALIASGLPYTIVRPGGMERPTDAYKET---HNL---T-LS---EEDTLFGG 277 (576)
T ss_pred hhcccCcccc-chh-hHHHHHHHHHHHHHHHHHcCCCEEEEECCeecCCccccccc---cce---e-ec---cccccCCC
Confidence 4322333322 244 88889889999999999999999999999999886432100 000 0 00 11134456
Q ss_pred cccchhhhhhhhhcCCh
Q 010380 414 IRVVKGSGKAINYLTPP 430 (512)
Q Consensus 414 ~~~~~~va~~v~~L~s~ 430 (512)
....++++..+.|+++.
T Consensus 278 ~isreDVA~vVvfLasd 294 (576)
T PLN03209 278 QVSNLQVAELMACMAKN 294 (576)
T ss_pred ccCHHHHHHHHHHHHcC
Confidence 66777888888888873
|
|
| >TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.80 E-value=2e-18 Score=177.69 Aligned_cols=168 Identities=16% Similarity=0.198 Sum_probs=133.0
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC--CEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 175 AGPRNVVITGSTRGLGKALAREFLLSG--DRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 175 l~gk~vLVTGassGIG~aiA~~La~~G--a~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
+++|+++||||+|+||.+++++|+++| ++|++++|+........+++ ...++.++.+|+
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~-------------------~~~~~~~v~~Dl 62 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKF-------------------PAPCLRFFIGDV 62 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHh-------------------CCCcEEEEEccC
Confidence 468999999999999999999999987 78999999865543222211 124678899999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|.+++.++++ .+|+|||+||... .+..+.++ ++.+++|+.|++++++++.+. +.++||++||
T Consensus 63 ~d~~~l~~~~~-------~iD~Vih~Ag~~~--~~~~~~~~---~~~~~~Nv~g~~~ll~aa~~~-----~~~~iV~~SS 125 (324)
T TIGR03589 63 RDKERLTRALR-------GVDYVVHAAALKQ--VPAAEYNP---FECIRTNINGAQNVIDAAIDN-----GVKRVVALST 125 (324)
T ss_pred CCHHHHHHHHh-------cCCEEEECcccCC--CchhhcCH---HHHHHHHHHHHHHHHHHHHHc-----CCCEEEEEeC
Confidence 99998887664 5899999999753 22233333 468999999999999998752 3468999988
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCC
Q 010380 333 AGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTD 382 (512)
Q Consensus 333 ~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~ 382 (512)
. ... .+...|++||++.+.+++.++.+....|++++++.||.|..|
T Consensus 126 ~-~~~---~p~~~Y~~sK~~~E~l~~~~~~~~~~~gi~~~~lR~g~v~G~ 171 (324)
T TIGR03589 126 D-KAA---NPINLYGATKLASDKLFVAANNISGSKGTRFSVVRYGNVVGS 171 (324)
T ss_pred C-CCC---CCCCHHHHHHHHHHHHHHHHHhhccccCcEEEEEeecceeCC
Confidence 6 222 234679999999999999999888888999999999999875
|
This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family. |
| >PRK06720 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.3e-18 Score=160.02 Aligned_cols=145 Identities=19% Similarity=0.213 Sum_probs=119.6
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
+++++|+++||||++|||.++|+.|+++|++|++++|+.+.+++..+++.+ .+.++.++.+|+
T Consensus 12 ~~l~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~-----------------~~~~~~~~~~Dl 74 (169)
T PRK06720 12 MKLAGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITN-----------------LGGEALFVSYDM 74 (169)
T ss_pred cccCCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh-----------------cCCcEEEEEccC
Confidence 557899999999999999999999999999999999998877766666643 345677889999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCC------CCCe
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQP------KGGH 326 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~------~~g~ 326 (512)
++.++++++++++.+.+|++|++|||||+.....++.+.+.++ ++ .+|+.+.+..++.+.+.|.++. ..|+
T Consensus 75 ~~~~~v~~~v~~~~~~~G~iDilVnnAG~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (169)
T PRK06720 75 EKQGDWQRVISITLNAFSRIDMLFQNAGLYKIDSIFSRQQEND-SN--VLCINDVWIEIKQLTSSFMKQQEEVVLSDLPI 151 (169)
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccccchhH-hh--ceeccHHHHHHHHHHHHHHhcCCEEEeecCce
Confidence 9999999999999999999999999999876445555556555 33 7788888999999999988763 3678
Q ss_pred EEeecCCCCCC
Q 010380 327 IFNMDGAGSGG 337 (512)
Q Consensus 327 IV~vSS~~a~~ 337 (512)
+..||+.++.+
T Consensus 152 ~~~~~~~~~~~ 162 (169)
T PRK06720 152 FGIIGTKGQSF 162 (169)
T ss_pred eeEeccccccc
Confidence 88888765443
|
|
| >PRK13656 trans-2-enoyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.8e-18 Score=174.37 Aligned_cols=188 Identities=18% Similarity=0.222 Sum_probs=140.5
Q ss_pred CCCCCCEEEEECCCChHHHH--HHHHHHHCCCEEEEEEcChhhHH------------HHHHHHHHHHhhhhhhcCCCCcc
Q 010380 173 CKAGPRNVVITGSTRGLGKA--LAREFLLSGDRVVVASRSSESVR------------MTVTELEENLKEGMMAAGGSSKK 238 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~a--iA~~La~~Ga~Vvl~~R~~~~l~------------~~~~el~~~~~~~~~~~g~~~~~ 238 (512)
..-.+|++||||+++|||++ +|+.| ++|++|+++++..++.+ ...+.+++
T Consensus 37 ~~~ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~~--------------- 100 (398)
T PRK13656 37 IANGPKKVLVIGASSGYGLASRIAAAF-GAGADTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAKA--------------- 100 (398)
T ss_pred cCCCCCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEecCcchhhhcccccccchHHHHHHHHHh---------------
Confidence 34568999999999999999 89999 99999998886432221 12222221
Q ss_pred cccCceEEEEEccCCChhhHHHHHHHHHHHcCCCcccccccccCCCCC------------C----C--------------
Q 010380 239 NLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFK------------P----L-------------- 288 (512)
Q Consensus 239 ~~~g~~v~~v~~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~------------~----~-------------- 288 (512)
.+..+..+.||++++++++++++++.+++|+||+||||+|...... | +
T Consensus 101 --~G~~a~~i~~DVss~E~v~~lie~I~e~~G~IDiLVnSaA~~~r~~p~~g~~~~s~lKpi~~~~~~~~~d~~~~~i~~ 178 (398)
T PRK13656 101 --AGLYAKSINGDAFSDEIKQKVIELIKQDLGQVDLVVYSLASPRRTDPKTGEVYRSVLKPIGEPYTGKTLDTDKDVIIE 178 (398)
T ss_pred --cCCceEEEEcCCCCHHHHHHHHHHHHHhcCCCCEEEECCccCCCCCcccCceeecccccccccccCCcccccccceeE
Confidence 3456778999999999999999999999999999999999863111 0 1
Q ss_pred ---cCCCHHHHHHHHHhhhhhH-----HHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCCCCc--chhhHHHHHHHHHHH
Q 010380 289 ---LQFTNEEIEQIVSTNLVGS-----ILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLT--AVYGSTKCGLRQLQA 358 (512)
Q Consensus 289 ---~~~s~e~~~~~~~vNv~g~-----~~l~k~~lp~m~~~~~~g~IV~vSS~~a~~~~~p~~--~~Y~aSKaAl~~l~~ 358 (512)
...+.++++.++. ++|. +.=.+...+.|. .++++|.+|..+ .....|.+ ..-+.+|++|+.-++
T Consensus 179 ~s~~~~~~~ei~~Tv~--vMggedw~~Wi~al~~a~lla---~g~~~va~TY~G-~~~t~p~Y~~g~mG~AKa~LE~~~r 252 (398)
T PRK13656 179 VTVEPATEEEIADTVK--VMGGEDWELWIDALDEAGVLA---EGAKTVAYSYIG-PELTHPIYWDGTIGKAKKDLDRTAL 252 (398)
T ss_pred EEEeeCCHHHHHHHHH--hhccchHHHHHHHHHhccccc---CCcEEEEEecCC-cceeecccCCchHHHHHHHHHHHHH
Confidence 1234455555544 4443 222344455554 468999999874 44555555 578999999999999
Q ss_pred HHHHHhCCCCeEEEEEeCCcccCCcc
Q 010380 359 SLFKESKRSKVGVHTASPGMVLTDLL 384 (512)
Q Consensus 359 sLa~El~~~GIrVn~V~PG~V~T~~~ 384 (512)
.|+.+|++.|||+|++.+|++.|.-.
T Consensus 253 ~La~~L~~~giran~i~~g~~~T~As 278 (398)
T PRK13656 253 ALNEKLAAKGGDAYVSVLKAVVTQAS 278 (398)
T ss_pred HHHHHhhhcCCEEEEEecCcccchhh
Confidence 99999999999999999999999754
|
|
| >TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.9e-17 Score=170.40 Aligned_cols=177 Identities=16% Similarity=0.073 Sum_probs=136.7
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCC
Q 010380 175 AGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCE 254 (512)
Q Consensus 175 l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd 254 (512)
+++|++|||||+|+||.++++.|+++|++|++++|+..........+. .+.++.++.+|++|
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~------------------~~~~~~~~~~Dl~~ 63 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLFELLN------------------LAKKIEDHFGDIRD 63 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCccchhHHHHHh------------------hcCCceEEEccCCC
Confidence 467999999999999999999999999999999998765433322221 12356778999999
Q ss_pred hhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCC
Q 010380 255 PADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAG 334 (512)
Q Consensus 255 ~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~ 334 (512)
.+++.++++.. .+|+|||+||... ...+.+++...+++|+.+++++++++.+ .+..+++|++||..
T Consensus 64 ~~~~~~~~~~~-----~~d~vih~A~~~~-----~~~~~~~~~~~~~~N~~g~~~ll~a~~~----~~~~~~iv~~SS~~ 129 (349)
T TIGR02622 64 AAKLRKAIAEF-----KPEIVFHLAAQPL-----VRKSYADPLETFETNVMGTVNLLEAIRA----IGSVKAVVNVTSDK 129 (349)
T ss_pred HHHHHHHHhhc-----CCCEEEECCcccc-----cccchhCHHHHHHHhHHHHHHHHHHHHh----cCCCCEEEEEechh
Confidence 99998888754 5899999999632 1344566788999999999999998743 21246899998852
Q ss_pred CCC-----------CCCCCcchhhHHHHHHHHHHHHHHHHhCC----CCeEEEEEeCCcccCCc
Q 010380 335 SGG-----------SSTPLTAVYGSTKCGLRQLQASLFKESKR----SKVGVHTASPGMVLTDL 383 (512)
Q Consensus 335 a~~-----------~~~p~~~~Y~aSKaAl~~l~~sLa~El~~----~GIrVn~V~PG~V~T~~ 383 (512)
... .+..+...|+.||.+.+.+++.++.++.+ .|++++++.|+.|-.|-
T Consensus 130 vyg~~~~~~~~~e~~~~~p~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~i~~~~lR~~~vyGp~ 193 (349)
T TIGR02622 130 CYRNDEWVWGYRETDPLGGHDPYSSSKACAELVIASYRSSFFGVANFHGIKIASARAGNVIGGG 193 (349)
T ss_pred hhCCCCCCCCCccCCCCCCCCcchhHHHHHHHHHHHHHHHhhcccccCCCcEEEEccCcccCCC
Confidence 110 11234578999999999999999988855 48999999999998763
|
Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose. |
| >PLN02989 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.9e-17 Score=165.11 Aligned_cols=175 Identities=13% Similarity=0.167 Sum_probs=133.5
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCCh
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEP 255 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~ 255 (512)
.+|++|||||+|+||++++++|+++|++|++++|+.+..+... .+... . ....++.++.+|++|.
T Consensus 4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~-~~~~~-~-------------~~~~~~~~~~~D~~d~ 68 (325)
T PLN02989 4 GGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKTD-HLLAL-D-------------GAKERLKLFKADLLDE 68 (325)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHH-HHHhc-c-------------CCCCceEEEeCCCCCc
Confidence 5799999999999999999999999999999999876554332 11110 0 0124688899999999
Q ss_pred hhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCC
Q 010380 256 ADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGS 335 (512)
Q Consensus 256 ~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a 335 (512)
++++++++ .+|+||||||... ...+.+.+.+.+++|+.+++++++++.+.+ +.++||++||...
T Consensus 69 ~~~~~~~~-------~~d~vih~A~~~~-----~~~~~~~~~~~~~~n~~g~~~ll~a~~~~~----~~~~iv~~SS~~~ 132 (325)
T PLN02989 69 GSFELAID-------GCETVFHTASPVA-----ITVKTDPQVELINPAVNGTINVLRTCTKVS----SVKRVILTSSMAA 132 (325)
T ss_pred hHHHHHHc-------CCCEEEEeCCCCC-----CCCCCChHHHHHHHHHHHHHHHHHHHHHcC----CceEEEEecchhh
Confidence 98887765 5899999999643 123445678999999999999999988753 2468999998632
Q ss_pred CCCCC-------------C--------CcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcc
Q 010380 336 GGSST-------------P--------LTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLL 384 (512)
Q Consensus 336 ~~~~~-------------p--------~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~ 384 (512)
...+. + ....|+.||.+.+.+++.++++. |+.++.+.|+.|..|..
T Consensus 133 ~~~~~~~~~~~~~~~E~~~~~p~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilR~~~vyGp~~ 199 (325)
T PLN02989 133 VLAPETKLGPNDVVDETFFTNPSFAEERKQWYVLSKTLAEDAAWRFAKDN---EIDLIVLNPGLVTGPIL 199 (325)
T ss_pred eecCCccCCCCCccCcCCCCchhHhcccccchHHHHHHHHHHHHHHHHHc---CCeEEEEcCCceeCCCC
Confidence 11100 0 02469999999999998887765 79999999999988764
|
|
| >PLN02653 GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.7e-16 Score=160.56 Aligned_cols=184 Identities=13% Similarity=0.055 Sum_probs=130.3
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHH-HHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVR-MTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~-~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
+.++|+||||||+|+||.+++++|+++|++|++++|+.+... ...+.+.+. ....+.++.++.+|+
T Consensus 3 ~~~~~~vlVTGatGfiG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~Dl 69 (340)
T PLN02653 3 DPPRKVALITGITGQDGSYLTEFLLSKGYEVHGIIRRSSNFNTQRLDHIYID-------------PHPNKARMKLHYGDL 69 (340)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEecccccccccchhhhccc-------------cccccCceEEEEecC
Confidence 567899999999999999999999999999999998754321 111221110 000234688999999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|.+++.++++.+ .+|+|||+||.... ....+..+..+++|+.|+.++++++.+.+.++....++|++||
T Consensus 70 ~d~~~~~~~~~~~-----~~d~Vih~A~~~~~-----~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~v~~Ss 139 (340)
T PLN02653 70 SDASSLRRWLDDI-----KPDEVYNLAAQSHV-----AVSFEMPDYTADVVATGALRLLEAVRLHGQETGRQIKYYQAGS 139 (340)
T ss_pred CCHHHHHHHHHHc-----CCCEEEECCcccch-----hhhhhChhHHHHHHHHHHHHHHHHHHHhccccccceeEEEecc
Confidence 9999999888764 58999999997541 1223445778899999999999999888754311126888876
Q ss_pred CCC-CC--------CCCCCcchhhHHHHHHHHHHHHHHHHhCC---CCeEEEEEeCCccc
Q 010380 333 AGS-GG--------SSTPLTAVYGSTKCGLRQLQASLFKESKR---SKVGVHTASPGMVL 380 (512)
Q Consensus 333 ~~a-~~--------~~~p~~~~Y~aSKaAl~~l~~sLa~El~~---~GIrVn~V~PG~V~ 380 (512)
... +. .+..+...|+.||.+.+.+++.++.++.- .++.++.+.|+...
T Consensus 140 ~~vyg~~~~~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~~~~~gp~~~~ 199 (340)
T PLN02653 140 SEMYGSTPPPQSETTPFHPRSPYAVAKVAAHWYTVNYREAYGLFACNGILFNHESPRRGE 199 (340)
T ss_pred HHHhCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHcCCeEEEeeeccccCCCCCc
Confidence 411 11 11123568999999999999999988742 23455666676443
|
|
| >PLN02986 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.4e-15 Score=155.78 Aligned_cols=175 Identities=16% Similarity=0.190 Sum_probs=129.5
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCC
Q 010380 175 AGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCE 254 (512)
Q Consensus 175 l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd 254 (512)
..||+++||||+|+||.+++++|+++|++|+++.|+.+..+... ++.... ....++.++.+|++|
T Consensus 3 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~-~~~~~~--------------~~~~~~~~~~~Dl~~ 67 (322)
T PLN02986 3 GGGKLVCVTGASGYIASWIVKLLLLRGYTVKATVRDLTDRKKTE-HLLALD--------------GAKERLKLFKADLLE 67 (322)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCCcchHHHH-HHHhcc--------------CCCCceEEEecCCCC
Confidence 46899999999999999999999999999999999876544322 111100 012467889999999
Q ss_pred hhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCC
Q 010380 255 PADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAG 334 (512)
Q Consensus 255 ~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~ 334 (512)
++++.++++ .+|++||+|+... .. . .+..++.+++|+.|..++++++... .+-++||++||..
T Consensus 68 ~~~~~~~~~-------~~d~vih~A~~~~-~~----~-~~~~~~~~~~nv~gt~~ll~~~~~~----~~v~rvV~~SS~~ 130 (322)
T PLN02986 68 ESSFEQAIE-------GCDAVFHTASPVF-FT----V-KDPQTELIDPALKGTINVLNTCKET----PSVKRVILTSSTA 130 (322)
T ss_pred cchHHHHHh-------CCCEEEEeCCCcC-CC----C-CCchhhhhHHHHHHHHHHHHHHHhc----CCccEEEEecchh
Confidence 998887765 4899999999643 11 1 1233568999999999999886532 1235899999873
Q ss_pred CCCCCC----------------C-----CcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcc
Q 010380 335 SGGSST----------------P-----LTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLL 384 (512)
Q Consensus 335 a~~~~~----------------p-----~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~ 384 (512)
....+. | ....|++||.+.+.+++.+.++. |+.+++++|+.|-.|..
T Consensus 131 ~~~~~~~~~~~~~~~~E~~~~~p~~~~~~~~~Y~~sK~~aE~~~~~~~~~~---~~~~~~lrp~~v~Gp~~ 198 (322)
T PLN02986 131 AVLFRQPPIEANDVVDETFFSDPSLCRETKNWYPLSKILAENAAWEFAKDN---GIDMVVLNPGFICGPLL 198 (322)
T ss_pred heecCCccCCCCCCcCcccCCChHHhhccccchHHHHHHHHHHHHHHHHHh---CCeEEEEcccceeCCCC
Confidence 211110 1 13569999999999888887764 79999999999998864
|
|
| >PLN02650 dihydroflavonol-4-reductase | Back alignment and domain information |
|---|
Probab=99.65 E-value=3e-15 Score=155.33 Aligned_cols=174 Identities=13% Similarity=0.108 Sum_probs=128.9
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCCh
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEP 255 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~ 255 (512)
..|+||||||+|.||.+++++|+++|++|++++|+.+........+ .. .. ...++.++.+|++|.
T Consensus 4 ~~k~iLVTGatGfIGs~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~-~~-~~-------------~~~~~~~v~~Dl~d~ 68 (351)
T PLN02650 4 QKETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPANVKKVKHLL-DL-PG-------------ATTRLTLWKADLAVE 68 (351)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHCCCEEEEEEcCcchhHHHHHHH-hc-cC-------------CCCceEEEEecCCCh
Confidence 5678999999999999999999999999999999876554332211 10 00 113578899999999
Q ss_pred hhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCC
Q 010380 256 ADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGS 335 (512)
Q Consensus 256 ~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a 335 (512)
+.+.++++ .+|+|||+|+... .... +..+..+++|+.|++++++++.+.. ..++||++||...
T Consensus 69 ~~~~~~~~-------~~d~ViH~A~~~~----~~~~--~~~~~~~~~Nv~gt~~ll~aa~~~~----~~~r~v~~SS~~~ 131 (351)
T PLN02650 69 GSFDDAIR-------GCTGVFHVATPMD----FESK--DPENEVIKPTVNGMLSIMKACAKAK----TVRRIVFTSSAGT 131 (351)
T ss_pred hhHHHHHh-------CCCEEEEeCCCCC----CCCC--CchhhhhhHHHHHHHHHHHHHHhcC----CceEEEEecchhh
Confidence 88877664 4899999998642 1111 2346788999999999999987642 1358999988632
Q ss_pred CCC-----C-C---------------CCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcc
Q 010380 336 GGS-----S-T---------------PLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLL 384 (512)
Q Consensus 336 ~~~-----~-~---------------p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~ 384 (512)
... + . .....|+.||.+.+.+++.++.++ |++++.+.|+.|..|..
T Consensus 132 ~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~Gp~~ 198 (351)
T PLN02650 132 VNVEEHQKPVYDEDCWSDLDFCRRKKMTGWMYFVSKTLAEKAAWKYAAEN---GLDFISIIPTLVVGPFI 198 (351)
T ss_pred cccCCCCCCccCcccCCchhhhhccccccchHHHHHHHHHHHHHHHHHHc---CCeEEEECCCceECCCC
Confidence 110 1 0 012379999999999999988764 79999999999988854
|
|
| >PLN02583 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.8e-15 Score=151.33 Aligned_cols=173 Identities=9% Similarity=0.035 Sum_probs=125.7
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhh--HHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEcc
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSES--VRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACD 251 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~--l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~D 251 (512)
+-.+|+|+||||+|+||++++++|+++|++|+++.|+.+. ......++.. .+.++.++.+|
T Consensus 3 ~~~~k~vlVTGatG~IG~~lv~~Ll~~G~~V~~~~R~~~~~~~~~~~~~l~~-----------------~~~~~~~~~~D 65 (297)
T PLN02583 3 DESSKSVCVMDASGYVGFWLVKRLLSRGYTVHAAVQKNGETEIEKEIRGLSC-----------------EEERLKVFDVD 65 (297)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEEcCchhhhHHHHHHhccc-----------------CCCceEEEEec
Confidence 4467899999999999999999999999999999996432 2111121110 12467889999
Q ss_pred CCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeec
Q 010380 252 VCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD 331 (512)
Q Consensus 252 ltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vS 331 (512)
++|.+++.+++. ..|.++|.++... +.+ +++++++++|+.|++++++++.+.+ +.++||++|
T Consensus 66 l~d~~~~~~~l~-------~~d~v~~~~~~~~------~~~-~~~~~~~~~nv~gt~~ll~aa~~~~----~v~riV~~S 127 (297)
T PLN02583 66 PLDYHSILDALK-------GCSGLFCCFDPPS------DYP-SYDEKMVDVEVRAAHNVLEACAQTD----TIEKVVFTS 127 (297)
T ss_pred CCCHHHHHHHHc-------CCCEEEEeCccCC------ccc-ccHHHHHHHHHHHHHHHHHHHHhcC----CccEEEEec
Confidence 999988765543 5788887665322 111 2467899999999999999998764 236899999
Q ss_pred CCCCCCCC--CC-----------C--------cchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcc
Q 010380 332 GAGSGGSS--TP-----------L--------TAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLL 384 (512)
Q Consensus 332 S~~a~~~~--~p-----------~--------~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~ 384 (512)
|..+.... .+ . ...|+.||...+.++..++++. |+++++|+|+.|..|..
T Consensus 128 S~~a~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~~~~---gi~~v~lrp~~v~Gp~~ 198 (297)
T PLN02583 128 SLTAVIWRDDNISTQKDVDERSWSDQNFCRKFKLWHALAKTLSEKTAWALAMDR---GVNMVSINAGLLMGPSL 198 (297)
T ss_pred chHheecccccCCCCCCCCcccCCCHHHHhhcccHHHHHHHHHHHHHHHHHHHh---CCcEEEEcCCcccCCCC
Confidence 86321111 00 0 0169999999999988877653 89999999999998864
|
|
| >PLN02896 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.8e-15 Score=152.89 Aligned_cols=179 Identities=13% Similarity=0.099 Sum_probs=130.8
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
...+++||||||+|.||.+++++|+++|++|++++|+.++.+....++. .+.++.++.+|++
T Consensus 7 ~~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~------------------~~~~~~~~~~Dl~ 68 (353)
T PLN02896 7 ESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWK------------------EGDRLRLFRADLQ 68 (353)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhc------------------cCCeEEEEECCCC
Confidence 3467889999999999999999999999999999998765544332221 1246888999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHH--HHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeec
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEI--EQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD 331 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~--~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vS 331 (512)
|.+++.++++ .+|+|||+|+...........+++.+ ..++++|+.|.+++++++.+.. ..++||++|
T Consensus 69 ~~~~~~~~~~-------~~d~Vih~A~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~----~~~~~v~~S 137 (353)
T PLN02896 69 EEGSFDEAVK-------GCDGVFHVAASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSK----TVKRVVFTS 137 (353)
T ss_pred CHHHHHHHHc-------CCCEEEECCccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcC----CccEEEEEe
Confidence 9988877654 48999999997542111122333333 4577888899999999886542 235899998
Q ss_pred CCCCCCC-C--------------C---------CCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcc
Q 010380 332 GAGSGGS-S--------------T---------PLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLL 384 (512)
Q Consensus 332 S~~a~~~-~--------------~---------p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~ 384 (512)
|...... + . +....|+.||.+.+.+++.++++. |+.+.++.|+.|-.|..
T Consensus 138 S~~vyg~~~~~~~~~~~~~E~~~~p~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~~lR~~~vyGp~~ 211 (353)
T PLN02896 138 SISTLTAKDSNGRWRAVVDETCQTPIDHVWNTKASGWVYVLSKLLTEEAAFKYAKEN---GIDLVSVITTTVAGPFL 211 (353)
T ss_pred chhhccccccCCCCCCccCcccCCcHHHhhccCCCCccHHHHHHHHHHHHHHHHHHc---CCeEEEEcCCcccCCCc
Confidence 8522110 0 0 122379999999999999887765 79999999988887753
|
|
| >PLN02572 UDP-sulfoquinovose synthase | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.1e-14 Score=156.10 Aligned_cols=185 Identities=13% Similarity=0.119 Sum_probs=132.7
Q ss_pred cCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChh---h----HHH------HHHHHHHHHhhhhhhcCCCCcc
Q 010380 172 HCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSE---S----VRM------TVTELEENLKEGMMAAGGSSKK 238 (512)
Q Consensus 172 ~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~---~----l~~------~~~el~~~~~~~~~~~g~~~~~ 238 (512)
..++++|+||||||+|+||.+++++|+++|++|++++|... . .+. ..+.+... ..
T Consensus 42 ~~~~~~k~VLVTGatGfIGs~Lv~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~----------- 109 (442)
T PLN02572 42 SSSSKKKKVMVIGGDGYCGWATALHLSKRGYEVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRW-KE----------- 109 (442)
T ss_pred CccccCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeccccccccccccccccccccchHHHHHHH-HH-----------
Confidence 34678899999999999999999999999999999875321 1 000 01111110 00
Q ss_pred cccCceEEEEEccCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 010380 239 NLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVM 318 (512)
Q Consensus 239 ~~~g~~v~~v~~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m 318 (512)
..+.++.++.+|++|.+++.++++.. ++|+|||+|+... .+....++++++..+++|+.|++++++++...-
T Consensus 110 -~~~~~v~~v~~Dl~d~~~v~~~l~~~-----~~D~ViHlAa~~~--~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~g 181 (442)
T PLN02572 110 -VSGKEIELYVGDICDFEFLSEAFKSF-----EPDAVVHFGEQRS--APYSMIDRSRAVFTQHNNVIGTLNVLFAIKEFA 181 (442)
T ss_pred -hhCCcceEEECCCCCHHHHHHHHHhC-----CCCEEEECCCccc--ChhhhcChhhHHHHHHHHHHHHHHHHHHHHHhC
Confidence 01235788999999999999888763 6999999997643 334455667788889999999999999876531
Q ss_pred HhCCCCCeEEeecCCCCCCC-----------------------CCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEe
Q 010380 319 RDQPKGGHIFNMDGAGSGGS-----------------------STPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTAS 375 (512)
Q Consensus 319 ~~~~~~g~IV~vSS~~a~~~-----------------------~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~ 375 (512)
...++|++||...... +..+...|+.||.+.+.+.+..+..+ |+.+.++.
T Consensus 182 ----v~~~~V~~SS~~vYG~~~~~~~E~~i~~~~~~~e~~~~~~~~P~s~Yg~SK~a~E~l~~~~~~~~---gl~~v~lR 254 (442)
T PLN02572 182 ----PDCHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLN 254 (442)
T ss_pred ----CCccEEEEecceecCCCCCCCcccccccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHhc---CCCEEEEe
Confidence 1247999988632110 11123579999999999888877654 79999999
Q ss_pred CCcccCCc
Q 010380 376 PGMVLTDL 383 (512)
Q Consensus 376 PG~V~T~~ 383 (512)
|+.|--|.
T Consensus 255 ~~~vyGp~ 262 (442)
T PLN02572 255 QGVVYGVR 262 (442)
T ss_pred cccccCCC
Confidence 99987664
|
|
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.3e-14 Score=143.61 Aligned_cols=173 Identities=18% Similarity=0.214 Sum_probs=116.4
Q ss_pred ccCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEc
Q 010380 171 EHCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIAC 250 (512)
Q Consensus 171 ~~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~ 250 (512)
+....++++++||||+|+||++++++|+++|++|+++.|+.++...... .+.++.++.+
T Consensus 11 ~~~~~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~---------------------~~~~~~~~~~ 69 (251)
T PLN00141 11 DAENVKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSLP---------------------QDPSLQIVRA 69 (251)
T ss_pred ccccccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHhcc---------------------cCCceEEEEe
Confidence 3445678999999999999999999999999999999999765432110 1235788999
Q ss_pred cCCChhhHHHHHHHHHHHc-CCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEe
Q 010380 251 DVCEPADVQKLSNFAVNEF-GSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFN 329 (512)
Q Consensus 251 Dltd~~sv~~~~~~i~~~~-g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~ 329 (512)
|++|.. ..+.+ .+ .++|+||+|+|......+. ..+++|+.+..++++++. +. +.++||+
T Consensus 70 Dl~d~~--~~l~~----~~~~~~d~vi~~~g~~~~~~~~---------~~~~~n~~~~~~ll~a~~----~~-~~~~iV~ 129 (251)
T PLN00141 70 DVTEGS--DKLVE----AIGDDSDAVICATGFRRSFDPF---------APWKVDNFGTVNLVEACR----KA-GVTRFIL 129 (251)
T ss_pred eCCCCH--HHHHH----HhhcCCCEEEECCCCCcCCCCC---------CceeeehHHHHHHHHHHH----Hc-CCCEEEE
Confidence 999842 12222 22 3699999999874311111 124688888888888763 33 4579999
Q ss_pred ecCCCCCC--CCCCCcchhhHHHHHHHHHHHHHHHH--hCCCCeEEEEEeCCcccCCcc
Q 010380 330 MDGAGSGG--SSTPLTAVYGSTKCGLRQLQASLFKE--SKRSKVGVHTASPGMVLTDLL 384 (512)
Q Consensus 330 vSS~~a~~--~~~p~~~~Y~aSKaAl~~l~~sLa~E--l~~~GIrVn~V~PG~V~T~~~ 384 (512)
+||.+... .+.+....|.+.|.+...+...+..| +...|+++++|.||++.++..
T Consensus 130 iSS~~v~g~~~~~~~~~~~~~~~~~~~~~~~k~~~e~~l~~~gi~~~iirpg~~~~~~~ 188 (251)
T PLN00141 130 VSSILVNGAAMGQILNPAYIFLNLFGLTLVAKLQAEKYIRKSGINYTIVRPGGLTNDPP 188 (251)
T ss_pred EccccccCCCcccccCcchhHHHHHHHHHHHHHHHHHHHHhcCCcEEEEECCCccCCCC
Confidence 99873211 12233455777665444333333333 456799999999999987753
|
|
| >PLN00198 anthocyanidin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.4e-14 Score=149.47 Aligned_cols=174 Identities=14% Similarity=0.168 Sum_probs=127.8
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
.+.+++++||||+|+||.+++++|+++|++|+++.|+.+...... .+.. .+ ...++.++.+|++
T Consensus 6 ~~~~~~vlItG~~GfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~-~~~~-~~--------------~~~~~~~~~~Dl~ 69 (338)
T PLN00198 6 PTGKKTACVIGGTGFLASLLIKLLLQKGYAVNTTVRDPENQKKIA-HLRA-LQ--------------ELGDLKIFGADLT 69 (338)
T ss_pred CCCCCeEEEECCchHHHHHHHHHHHHCCCEEEEEECCCCCHHHHH-HHHh-cC--------------CCCceEEEEcCCC
Confidence 356889999999999999999999999999999988865432221 1111 00 0125788999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
|++++.++++ ++|+|||+|+... .. ..+.....+++|+.+..++++++.+.. +.++||++||.
T Consensus 70 d~~~~~~~~~-------~~d~vih~A~~~~----~~--~~~~~~~~~~~nv~g~~~ll~a~~~~~----~~~~~v~~SS~ 132 (338)
T PLN00198 70 DEESFEAPIA-------GCDLVFHVATPVN----FA--SEDPENDMIKPAIQGVHNVLKACAKAK----SVKRVILTSSA 132 (338)
T ss_pred ChHHHHHHHh-------cCCEEEEeCCCCc----cC--CCChHHHHHHHHHHHHHHHHHHHHhcC----CccEEEEeecc
Confidence 9988877654 5899999998532 11 123345678999999999999876531 24689999986
Q ss_pred CCCCC-----------------------CCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCc
Q 010380 334 GSGGS-----------------------STPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDL 383 (512)
Q Consensus 334 ~a~~~-----------------------~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~ 383 (512)
..... ..++...|+.||.+.+.+++.++.++ |+.+..+.|+.|-.|-
T Consensus 133 ~~~g~~~~~~~~~~~~E~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~~~R~~~vyGp~ 202 (338)
T PLN00198 133 AAVSINKLSGTGLVMNEKNWTDVEFLTSEKPPTWGYPASKTLAEKAAWKFAEEN---NIDLITVIPTLMAGPS 202 (338)
T ss_pred eeeeccCCCCCCceeccccCCchhhhhhcCCccchhHHHHHHHHHHHHHHHHhc---CceEEEEeCCceECCC
Confidence 32110 11234579999999999999887764 7999999999998774
|
|
| >PLN02240 UDP-glucose 4-epimerase | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.9e-14 Score=148.94 Aligned_cols=177 Identities=17% Similarity=0.138 Sum_probs=125.9
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
|++.+|+++||||+|+||.+++++|+++|++|++++|.........+.+.+.... .+.++.++.+|+
T Consensus 1 ~~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~D~ 67 (352)
T PLN02240 1 MSLMGRTILVTGGAGYIGSHTVLQLLLAGYKVVVIDNLDNSSEEALRRVKELAGD-------------LGDNLVFHKVDL 67 (352)
T ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCcchHHHHHHHHHhhcc-------------cCccceEEecCc
Confidence 4677899999999999999999999999999999987643332222222221000 124577899999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|++++.++++.. .+|+|||+||... .. .+.+++.+.+++|+.++.++++++. +. +.+++|++||
T Consensus 68 ~~~~~l~~~~~~~-----~~d~vih~a~~~~-~~----~~~~~~~~~~~~n~~~~~~l~~~~~----~~-~~~~~v~~Ss 132 (352)
T PLN02240 68 RDKEALEKVFAST-----RFDAVIHFAGLKA-VG----ESVAKPLLYYDNNLVGTINLLEVMA----KH-GCKKLVFSSS 132 (352)
T ss_pred CCHHHHHHHHHhC-----CCCEEEEccccCC-cc----ccccCHHHHHHHHHHHHHHHHHHHH----Hc-CCCEEEEEcc
Confidence 9999998887652 7999999999753 11 2334677899999999999987653 22 3458999988
Q ss_pred CCCCC----------CCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcc
Q 010380 333 AGSGG----------SSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMV 379 (512)
Q Consensus 333 ~~a~~----------~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V 379 (512)
..... .+..+...|+.||.+.+.+++.++.+. .++.+..+.|+.+
T Consensus 133 ~~vyg~~~~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~~R~~~v 187 (352)
T PLN02240 133 ATVYGQPEEVPCTEEFPLSATNPYGRTKLFIEEICRDIHASD--PEWKIILLRYFNP 187 (352)
T ss_pred HHHhCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhc--CCCCEEEEeecCc
Confidence 52111 112235689999999999999887652 3566777665433
|
|
| >PRK10217 dTDP-glucose 4,6-dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.2e-14 Score=150.70 Aligned_cols=176 Identities=15% Similarity=0.171 Sum_probs=125.5
Q ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEE-EEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChh
Q 010380 178 RNVVITGSTRGLGKALAREFLLSGDRVV-VASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPA 256 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~Ga~Vv-l~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~ 256 (512)
|+||||||+|+||.+++++|+++|++|+ +.+|.... ... ..+.... ...++.++.+|++|.+
T Consensus 2 ~~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~~~~~~-~~~-~~~~~~~---------------~~~~~~~~~~Dl~d~~ 64 (355)
T PRK10217 2 RKILITGGAGFIGSALVRYIINETSDAVVVVDKLTYA-GNL-MSLAPVA---------------QSERFAFEKVDICDRA 64 (355)
T ss_pred cEEEEEcCCcHHHHHHHHHHHHcCCCEEEEEecCccc-cch-hhhhhcc---------------cCCceEEEECCCcChH
Confidence 5799999999999999999999998755 44544321 111 1111100 1235778899999999
Q ss_pred hHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHH---hC-CCCCeEEeecC
Q 010380 257 DVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMR---DQ-PKGGHIFNMDG 332 (512)
Q Consensus 257 sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~---~~-~~~g~IV~vSS 332 (512)
+++++++. .++|+|||+||... .+.+.++++..+++|+.|++++++++.+.|. .. .+..++|++||
T Consensus 65 ~~~~~~~~-----~~~D~Vih~A~~~~-----~~~~~~~~~~~~~~N~~gt~~ll~a~~~~~~~~~~~~~~~~~~i~~SS 134 (355)
T PRK10217 65 ELARVFTE-----HQPDCVMHLAAESH-----VDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTEDKKSAFRFHHIST 134 (355)
T ss_pred HHHHHHhh-----cCCCEEEECCcccC-----cchhhhChHHHHHHhhHHHHHHHHHHHHhhhcccccccCceEEEEecc
Confidence 98888775 26999999999753 1234466789999999999999999987642 11 12348999988
Q ss_pred CCCCC------------CCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCc
Q 010380 333 AGSGG------------SSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDL 383 (512)
Q Consensus 333 ~~a~~------------~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~ 383 (512)
..... .+..+...|+.||.+.+.+++.+++++ ++++..+.|+.|--|-
T Consensus 135 ~~vyg~~~~~~~~~~E~~~~~p~s~Y~~sK~~~e~~~~~~~~~~---~~~~~i~r~~~v~Gp~ 194 (355)
T PRK10217 135 DEVYGDLHSTDDFFTETTPYAPSSPYSASKASSDHLVRAWLRTY---GLPTLITNCSNNYGPY 194 (355)
T ss_pred hhhcCCCCCCCCCcCCCCCCCCCChhHHHHHHHHHHHHHHHHHh---CCCeEEEeeeeeeCCC
Confidence 52111 122345789999999999999998876 5777888887775543
|
|
| >PLN02214 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.5e-14 Score=148.38 Aligned_cols=168 Identities=18% Similarity=0.175 Sum_probs=127.4
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHH-HHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMT-VTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~-~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
.+++|+++||||+|.||.+++++|+++|++|++++|+.+..... ..++.. ...++.++.+|+
T Consensus 7 ~~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~-----------------~~~~~~~~~~Dl 69 (342)
T PLN02214 7 SPAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEG-----------------GKERLILCKADL 69 (342)
T ss_pred cCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhC-----------------CCCcEEEEecCc
Confidence 35688999999999999999999999999999999986643221 111110 123578899999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|.+++.++++ .+|+|||+|+... ++.+..+++|+.|+.++++++... +.++||++||
T Consensus 70 ~d~~~~~~~~~-------~~d~Vih~A~~~~----------~~~~~~~~~nv~gt~~ll~aa~~~-----~v~r~V~~SS 127 (342)
T PLN02214 70 QDYEALKAAID-------GCDGVFHTASPVT----------DDPEQMVEPAVNGAKFVINAAAEA-----KVKRVVITSS 127 (342)
T ss_pred CChHHHHHHHh-------cCCEEEEecCCCC----------CCHHHHHHHHHHHHHHHHHHHHhc-----CCCEEEEecc
Confidence 99998887765 5899999998632 235678999999999999987642 3358999998
Q ss_pred CCCCC-CC--CC-----------------CcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCc
Q 010380 333 AGSGG-SS--TP-----------------LTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDL 383 (512)
Q Consensus 333 ~~a~~-~~--~p-----------------~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~ 383 (512)
..+.. .+ .+ ....|+.||.+.+.+++.++.+. |+.+.++.|+.|--|.
T Consensus 128 ~~avyg~~~~~~~~~~~E~~~~~~~~~~~p~~~Y~~sK~~aE~~~~~~~~~~---g~~~v~lRp~~vyGp~ 195 (342)
T PLN02214 128 IGAVYMDPNRDPEAVVDESCWSDLDFCKNTKNWYCYGKMVAEQAAWETAKEK---GVDLVVLNPVLVLGPP 195 (342)
T ss_pred ceeeeccCCCCCCcccCcccCCChhhccccccHHHHHHHHHHHHHHHHHHHc---CCcEEEEeCCceECCC
Confidence 53211 00 00 23479999999999998887765 7999999999997764
|
|
| >TIGR01472 gmd GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.4e-14 Score=149.78 Aligned_cols=163 Identities=17% Similarity=0.106 Sum_probs=115.4
Q ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHH-HHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChh
Q 010380 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVR-MTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPA 256 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~-~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~ 256 (512)
|++|||||+|+||.+++++|+++|++|++++|+.+... +....+.+... ...+.++.++.+|++|.+
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~Dl~d~~ 68 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGYEVHGLIRRSSSFNTQRIEHIYEDPH------------NVNKARMKLHYGDLTDSS 68 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCCEEEEEecCCcccchhhhhhhhhccc------------cccccceeEEEeccCCHH
Confidence 68999999999999999999999999999999864211 11111111000 001246888999999999
Q ss_pred hHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCC
Q 010380 257 DVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSG 336 (512)
Q Consensus 257 sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~ 336 (512)
++.++++.+ ++|+|||+|+.... . ...+.-...+++|+.|+.++++++.+.-.+ +..++|++||....
T Consensus 69 ~l~~~~~~~-----~~d~ViH~Aa~~~~-~----~~~~~~~~~~~~n~~gt~~ll~a~~~~~~~--~~~~~v~~SS~~vy 136 (343)
T TIGR01472 69 NLRRIIDEI-----KPTEIYNLAAQSHV-K----VSFEIPEYTADVDGIGTLRLLEAVRTLGLI--KSVKFYQASTSELY 136 (343)
T ss_pred HHHHHHHhC-----CCCEEEECCccccc-c----hhhhChHHHHHHHHHHHHHHHHHHHHhCCC--cCeeEEEeccHHhh
Confidence 998888764 58999999997541 1 122233567789999999999998764211 12378898885211
Q ss_pred C----------CCCCCcchhhHHHHHHHHHHHHHHHHh
Q 010380 337 G----------SSTPLTAVYGSTKCGLRQLQASLFKES 364 (512)
Q Consensus 337 ~----------~~~p~~~~Y~aSKaAl~~l~~sLa~El 364 (512)
. .+..+...|++||.+.+.+++.++.++
T Consensus 137 g~~~~~~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~~~ 174 (343)
T TIGR01472 137 GKVQEIPQNETTPFYPRSPYAAAKLYAHWITVNYREAY 174 (343)
T ss_pred CCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHh
Confidence 1 112245689999999999999998876
|
Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116). |
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.6e-14 Score=144.14 Aligned_cols=174 Identities=15% Similarity=0.176 Sum_probs=126.5
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCCh
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEP 255 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~ 255 (512)
++|+++||||+|.||.+++++|+++|++|++++|+.+..... ..+... . ....++.++.+|++|+
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~-~~~~~~-~-------------~~~~~~~~~~~Dl~~~ 67 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKT-EHLLAL-D-------------GAKERLHLFKANLLEE 67 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhH-HHHHhc-c-------------CCCCceEEEeccccCc
Confidence 468999999999999999999999999999999986543222 111110 0 0124678899999999
Q ss_pred hhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCC
Q 010380 256 ADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGS 335 (512)
Q Consensus 256 ~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a 335 (512)
+++.++++ .+|+|||+|+... . .. . +..+..+++|+.++.++++++...+ +..+||++||..+
T Consensus 68 ~~~~~~~~-------~~d~Vih~A~~~~-~-~~--~--~~~~~~~~~nv~gt~~ll~a~~~~~----~~~~~v~~SS~~~ 130 (322)
T PLN02662 68 GSFDSVVD-------GCEGVFHTASPFY-H-DV--T--DPQAELIDPAVKGTLNVLRSCAKVP----SVKRVVVTSSMAA 130 (322)
T ss_pred chHHHHHc-------CCCEEEEeCCccc-C-CC--C--ChHHHHHHHHHHHHHHHHHHHHhCC----CCCEEEEccCHHH
Confidence 88877665 5899999998643 1 11 1 1225789999999999999876432 2358999998632
Q ss_pred -CCCCC---------------CC-----cchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcc
Q 010380 336 -GGSST---------------PL-----TAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLL 384 (512)
Q Consensus 336 -~~~~~---------------p~-----~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~ 384 (512)
...+. |. ...|+.||.+.+.+++.+..+. |+++..+.|+.+..|..
T Consensus 131 ~~y~~~~~~~~~~~~E~~~~~p~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~~lRp~~v~Gp~~ 197 (322)
T PLN02662 131 VAYNGKPLTPDVVVDETWFSDPAFCEESKLWYVLSKTLAEEAAWKFAKEN---GIDMVTINPAMVIGPLL 197 (322)
T ss_pred hcCCCcCCCCCCcCCcccCCChhHhhcccchHHHHHHHHHHHHHHHHHHc---CCcEEEEeCCcccCCCC
Confidence 11110 10 1479999999999888776654 79999999999998864
|
|
| >TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.9e-14 Score=141.60 Aligned_cols=170 Identities=13% Similarity=0.122 Sum_probs=124.0
Q ss_pred EEEEECCCChHHHHHHHHHHHCC--CEEEEEEcChhhH-HHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCCh
Q 010380 179 NVVITGSTRGLGKALAREFLLSG--DRVVVASRSSESV-RMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEP 255 (512)
Q Consensus 179 ~vLVTGassGIG~aiA~~La~~G--a~Vvl~~R~~~~l-~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~ 255 (512)
+|+||||+|+||.+++++|+++| ++|++++|..... .+..+.+. ...++.++.+|++|+
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~Dl~~~ 62 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENLADLE------------------DNPRYRFVKGDIGDR 62 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchhhhhhhhhc------------------cCCCcEEEEcCCcCH
Confidence 37999999999999999999987 7898887743211 11111111 113577889999999
Q ss_pred hhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCC
Q 010380 256 ADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGS 335 (512)
Q Consensus 256 ~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a 335 (512)
+++.++++.. ++|+|||+|+.... +.+.+..+..+++|+.++.++++++...+. +.++|++||...
T Consensus 63 ~~~~~~~~~~-----~~d~vi~~a~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~----~~~~i~~Ss~~v 128 (317)
T TIGR01181 63 ELVSRLFTEH-----QPDAVVHFAAESHV-----DRSISGPAAFIETNVVGTYTLLEAVRKYWH----EFRFHHISTDEV 128 (317)
T ss_pred HHHHHHHhhc-----CCCEEEEcccccCc-----hhhhhCHHHHHHHHHHHHHHHHHHHHhcCC----CceEEEeeccce
Confidence 9998887653 59999999997531 223456678899999999999988766532 247999988521
Q ss_pred CC-----------CCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCc
Q 010380 336 GG-----------SSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDL 383 (512)
Q Consensus 336 ~~-----------~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~ 383 (512)
.. .+......|+.+|.+.+.+++.++.+. ++++.++.|+.+-.+.
T Consensus 129 ~g~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~i~R~~~i~G~~ 184 (317)
T TIGR01181 129 YGDLEKGDAFTETTPLAPSSPYSASKAASDHLVRAYHRTY---GLPALITRCSNNYGPY 184 (317)
T ss_pred eCCCCCCCCcCCCCCCCCCCchHHHHHHHHHHHHHHHHHh---CCCeEEEEeccccCCC
Confidence 11 011234579999999999999988775 6899999999887654
|
This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor. |
| >COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.2e-13 Score=142.96 Aligned_cols=174 Identities=20% Similarity=0.246 Sum_probs=146.5
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
.++||+++||||+|-||.++++++++.+. ++++.+|++.++.....++.+.++ ..++.++-+|+
T Consensus 247 ~~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~~---------------~~~~~~~igdV 311 (588)
T COG1086 247 MLTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFP---------------ELKLRFYIGDV 311 (588)
T ss_pred HcCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhhCC---------------CcceEEEeccc
Confidence 47899999999999999999999999995 799999999999888888877543 36889999999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
.|.+.+..+++.. ++|+++|.|+.-+ -|+.+.. ..+.+.+|++|+.++++++... +-..+|.+|+
T Consensus 312 rD~~~~~~~~~~~-----kvd~VfHAAA~KH--VPl~E~n---P~Eai~tNV~GT~nv~~aa~~~-----~V~~~V~iST 376 (588)
T COG1086 312 RDRDRVERAMEGH-----KVDIVFHAAALKH--VPLVEYN---PEEAIKTNVLGTENVAEAAIKN-----GVKKFVLIST 376 (588)
T ss_pred ccHHHHHHHHhcC-----CCceEEEhhhhcc--CcchhcC---HHHHHHHhhHhHHHHHHHHHHh-----CCCEEEEEec
Confidence 9999999988754 6999999999754 4555544 4678999999999999999765 3447999975
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccC
Q 010380 333 AGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLT 381 (512)
Q Consensus 333 ~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T 381 (512)
- ....+...||+||...+.+..+++.+..+.+-++.+|.=|.|--
T Consensus 377 D----KAV~PtNvmGaTKr~aE~~~~a~~~~~~~~~T~f~~VRFGNVlG 421 (588)
T COG1086 377 D----KAVNPTNVMGATKRLAEKLFQAANRNVSGTGTRFCVVRFGNVLG 421 (588)
T ss_pred C----cccCCchHhhHHHHHHHHHHHHHhhccCCCCcEEEEEEecceec
Confidence 4 33455678999999999999999998876678999999998864
|
|
| >PRK10675 UDP-galactose-4-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.5e-13 Score=138.71 Aligned_cols=170 Identities=17% Similarity=0.152 Sum_probs=119.3
Q ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhhH
Q 010380 179 NVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPADV 258 (512)
Q Consensus 179 ~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~sv 258 (512)
+++||||+|+||.+++++|+++|++|++++|...........+.+. .+.++.++.+|++|.+++
T Consensus 2 ~vlVtGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~Dl~d~~~~ 65 (338)
T PRK10675 2 RVLVTGGSGYIGSHTCVQLLQNGHDVVILDNLCNSKRSVLPVIERL----------------GGKHPTFVEGDIRNEALL 65 (338)
T ss_pred eEEEECCCChHHHHHHHHHHHCCCeEEEEecCCCchHhHHHHHHHh----------------cCCCceEEEccCCCHHHH
Confidence 5899999999999999999999999999887543332222222210 123567789999999988
Q ss_pred HHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCCC-
Q 010380 259 QKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGG- 337 (512)
Q Consensus 259 ~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~~- 337 (512)
.++++. .++|+|||+||... ... ..+.....+++|+.++.++++++. +. +.++||++||.....
T Consensus 66 ~~~~~~-----~~~d~vvh~a~~~~-~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~-~~~~~v~~Ss~~~yg~ 130 (338)
T PRK10675 66 TEILHD-----HAIDTVIHFAGLKA-VGE----SVQKPLEYYDNNVNGTLRLISAMR----AA-NVKNLIFSSSATVYGD 130 (338)
T ss_pred HHHHhc-----CCCCEEEECCcccc-ccc----hhhCHHHHHHHHHHHHHHHHHHHH----Hc-CCCEEEEeccHHhhCC
Confidence 887653 36999999999754 111 123345678999999999887653 33 346899998862111
Q ss_pred C---------CC-CCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccC
Q 010380 338 S---------ST-PLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLT 381 (512)
Q Consensus 338 ~---------~~-p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T 381 (512)
. +. .....|+.+|.+.+.+++.++++.. ++++..+.|+.+-.
T Consensus 131 ~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~--~~~~~ilR~~~v~g 182 (338)
T PRK10675 131 QPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQP--DWSIALLRYFNPVG 182 (338)
T ss_pred CCCCccccccCCCCCCChhHHHHHHHHHHHHHHHHhcC--CCcEEEEEeeeecC
Confidence 0 00 2357899999999999999877643 46777777655443
|
|
| >PRK10084 dTDP-glucose 4,6 dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.6e-13 Score=139.59 Aligned_cols=172 Identities=12% Similarity=0.160 Sum_probs=120.9
Q ss_pred EEEEECCCChHHHHHHHHHHHCCCE-EEEEEcChh--hHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCCh
Q 010380 179 NVVITGSTRGLGKALAREFLLSGDR-VVVASRSSE--SVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEP 255 (512)
Q Consensus 179 ~vLVTGassGIG~aiA~~La~~Ga~-Vvl~~R~~~--~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~ 255 (512)
+|+||||+|+||.+++++|+++|++ |+.+++... ..+.. ..+. .+.++.++.+|++|.
T Consensus 2 kilITGgtG~iG~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~-~~~~------------------~~~~~~~~~~Dl~d~ 62 (352)
T PRK10084 2 KILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGNLESL-ADVS------------------DSERYVFEHADICDR 62 (352)
T ss_pred eEEEECCCcHHhHHHHHHHHHhCCCeEEEecCCCccchHHHH-Hhcc------------------cCCceEEEEecCCCH
Confidence 5899999999999999999999976 554555321 11111 1110 124577889999999
Q ss_pred hhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhC----CCCCeEEeec
Q 010380 256 ADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQ----PKGGHIFNMD 331 (512)
Q Consensus 256 ~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~----~~~g~IV~vS 331 (512)
++++++++. ..+|+|||+||.... . .+.+..+..+++|+.|+.++++++.+.|... .+..++|++|
T Consensus 63 ~~~~~~~~~-----~~~d~vih~A~~~~~-~----~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~~~~~i~~S 132 (352)
T PRK10084 63 AELDRIFAQ-----HQPDAVMHLAAESHV-D----RSITGPAAFIETNIVGTYVLLEAARNYWSALDEDKKNAFRFHHIS 132 (352)
T ss_pred HHHHHHHHh-----cCCCEEEECCcccCC-c----chhcCchhhhhhhhHHHHHHHHHHHHhccccccccccceeEEEec
Confidence 999888875 279999999997531 1 1123346789999999999999998876421 1234799998
Q ss_pred CCCCCCC--------------------CCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCC
Q 010380 332 GAGSGGS--------------------STPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTD 382 (512)
Q Consensus 332 S~~a~~~--------------------~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~ 382 (512)
|...... +..+...|+.||.+.+.+++.++.++ |+.+..+.|+.|--|
T Consensus 133 S~~vyg~~~~~~~~~~~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---g~~~vilr~~~v~Gp 200 (352)
T PRK10084 133 TDEVYGDLPHPDEVENSEELPLFTETTAYAPSSPYSASKASSDHLVRAWLRTY---GLPTIVTNCSNNYGP 200 (352)
T ss_pred chhhcCCCCccccccccccCCCccccCCCCCCChhHHHHHHHHHHHHHHHHHh---CCCEEEEeccceeCC
Confidence 8521110 11234689999999999999998876 566666777666544
|
|
| >TIGR03466 HpnA hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.2e-13 Score=137.73 Aligned_cols=161 Identities=21% Similarity=0.253 Sum_probs=121.3
Q ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhh
Q 010380 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPAD 257 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~s 257 (512)
++++||||+|+||..++++|+++|++|++++|+++.... + ....+.++.+|++|.++
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~----~-------------------~~~~~~~~~~D~~~~~~ 57 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRN----L-------------------EGLDVEIVEGDLRDPAS 57 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccc----c-------------------ccCCceEEEeeCCCHHH
Confidence 368999999999999999999999999999998654321 1 11357789999999988
Q ss_pred HHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCCC
Q 010380 258 VQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGG 337 (512)
Q Consensus 258 v~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~~ 337 (512)
++++++ .+|++||+|+... . ..++.+..+++|+.++.++++++... +.+++|++||.....
T Consensus 58 l~~~~~-------~~d~vi~~a~~~~----~---~~~~~~~~~~~n~~~~~~l~~~~~~~-----~~~~~v~~SS~~~~~ 118 (328)
T TIGR03466 58 LRKAVA-------GCRALFHVAADYR----L---WAPDPEEMYAANVEGTRNLLRAALEA-----GVERVVYTSSVATLG 118 (328)
T ss_pred HHHHHh-------CCCEEEEeceecc----c---CCCCHHHHHHHHHHHHHHHHHHHHHh-----CCCeEEEEechhhcC
Confidence 877664 5899999998532 1 12345678999999999998887542 345899998863211
Q ss_pred C-CC--------C-----CcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCc
Q 010380 338 S-ST--------P-----LTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDL 383 (512)
Q Consensus 338 ~-~~--------p-----~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~ 383 (512)
. .. + ....|+.+|.+.+.+.+.++.+. |+.+..+.|+.+-.+-
T Consensus 119 ~~~~~~~~~e~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~ilR~~~~~G~~ 175 (328)
T TIGR03466 119 VRGDGTPADETTPSSLDDMIGHYKRSKFLAEQAALEMAAEK---GLPVVIVNPSTPIGPR 175 (328)
T ss_pred cCCCCCCcCccCCCCcccccChHHHHHHHHHHHHHHHHHhc---CCCEEEEeCCccCCCC
Confidence 0 00 0 13479999999999999887653 7999999999886553
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. |
| >PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.8e-13 Score=138.34 Aligned_cols=182 Identities=15% Similarity=0.118 Sum_probs=128.8
Q ss_pred cccCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEE
Q 010380 170 EEHCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIA 249 (512)
Q Consensus 170 ~~~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~ 249 (512)
+..+.+++|+|+||||+|-||..++++|+++|++|++++|...........+...... ....++.++.
T Consensus 8 ~~~~~~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~ 75 (348)
T PRK15181 8 RTKLVLAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSE------------EQWSRFIFIQ 75 (348)
T ss_pred hhcccccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhhhhhhhcccc------------ccCCceEEEE
Confidence 3456678899999999999999999999999999999998654332222222110000 0113578899
Q ss_pred ccCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEe
Q 010380 250 CDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFN 329 (512)
Q Consensus 250 ~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~ 329 (512)
+|++|.+++.++++ .+|+|||.|+.... + .+.++....+++|+.|+.++.+++.. . +-.++|+
T Consensus 76 ~Di~d~~~l~~~~~-------~~d~ViHlAa~~~~--~---~~~~~~~~~~~~Nv~gt~nll~~~~~----~-~~~~~v~ 138 (348)
T PRK15181 76 GDIRKFTDCQKACK-------NVDYVLHQAALGSV--P---RSLKDPIATNSANIDGFLNMLTAARD----A-HVSSFTY 138 (348)
T ss_pred ccCCCHHHHHHHhh-------CCCEEEECccccCc--h---hhhhCHHHHHHHHHHHHHHHHHHHHH----c-CCCeEEE
Confidence 99999887776654 48999999997431 1 11223456799999999999887743 2 3358999
Q ss_pred ecCCCCCCC-C---------CCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCc
Q 010380 330 MDGAGSGGS-S---------TPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDL 383 (512)
Q Consensus 330 vSS~~a~~~-~---------~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~ 383 (512)
+||...... + ..+...|+.||.+.+.+.+.++.+. |+++..+.|+.|--|-
T Consensus 139 ~SS~~vyg~~~~~~~~e~~~~~p~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lR~~~vyGp~ 199 (348)
T PRK15181 139 AASSSTYGDHPDLPKIEERIGRPLSPYAVTKYVNELYADVFARSY---EFNAIGLRYFNVFGRR 199 (348)
T ss_pred eechHhhCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHHHHHHHh---CCCEEEEEecceeCcC
Confidence 988621111 1 1134579999999999988876654 7999999999887664
|
|
| >KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.6e-13 Score=135.65 Aligned_cols=174 Identities=16% Similarity=0.167 Sum_probs=129.2
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHH--HHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMT--VTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~--~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
.+++|+||||+|-||..+++.|+++||+|..+.|++++.+.. ..+++. ...+...+..|++
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~~~~L~~l~~-----------------a~~~l~l~~aDL~ 67 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLRKLEG-----------------AKERLKLFKADLL 67 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhhhHHHHHhccc-----------------CcccceEEecccc
Confidence 678999999999999999999999999999999998874332 233221 2346888999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
|+++++++++ +.|+|+|.|.... +...+ .-.+.++.++.|+.++++++...- .-.+||+.||.
T Consensus 68 d~~sf~~ai~-------gcdgVfH~Asp~~----~~~~~--~e~~li~pav~Gt~nVL~ac~~~~----sVkrvV~TSS~ 130 (327)
T KOG1502|consen 68 DEGSFDKAID-------GCDGVFHTASPVD----FDLED--PEKELIDPAVKGTKNVLEACKKTK----SVKRVVYTSST 130 (327)
T ss_pred ccchHHHHHh-------CCCEEEEeCccCC----CCCCC--cHHhhhhHHHHHHHHHHHHHhccC----CcceEEEeccH
Confidence 9999998887 5899999998654 11111 223789999999999999886542 23589999997
Q ss_pred CCCCCCCCC-----------c----------chhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccC
Q 010380 334 GSGGSSTPL-----------T----------AVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLS 386 (512)
Q Consensus 334 ~a~~~~~p~-----------~----------~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~ 386 (512)
++-....+. + ..|+.||.--+.-+-.++.| .|+...+|+||.|--|....
T Consensus 131 aAv~~~~~~~~~~~vvdE~~wsd~~~~~~~~~~Y~~sK~lAEkaAw~fa~e---~~~~lv~inP~lV~GP~l~~ 201 (327)
T KOG1502|consen 131 AAVRYNGPNIGENSVVDEESWSDLDFCRCKKLWYALSKTLAEKAAWEFAKE---NGLDLVTINPGLVFGPGLQP 201 (327)
T ss_pred HHhccCCcCCCCCcccccccCCcHHHHHhhHHHHHHHHHHHHHHHHHHHHh---CCccEEEecCCceECCCccc
Confidence 433221011 1 25888887655555555554 37999999999999887755
|
|
| >TIGR01179 galE UDP-glucose-4-epimerase | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.1e-13 Score=135.16 Aligned_cols=169 Identities=18% Similarity=0.126 Sum_probs=121.8
Q ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhhH
Q 010380 179 NVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPADV 258 (512)
Q Consensus 179 ~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~sv 258 (512)
+++||||+|+||.+++++|+++|++|++++|......+...++.+ ..++..+.+|++|.+++
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g~~V~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~D~~~~~~~ 62 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESGHEVVVLDNLSNGSPEALKRGER------------------ITRVTFVEGDLRDRELL 62 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCCCeEEEEeCCCccchhhhhhhcc------------------ccceEEEECCCCCHHHH
Confidence 379999999999999999999999999887653322211111110 12577889999999999
Q ss_pred HHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCC
Q 010380 259 QKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGS 338 (512)
Q Consensus 259 ~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~~~ 338 (512)
.++++. +++|++|||||.... . .+.++..+.+++|+.++..+++++.. . +.+++|++||......
T Consensus 63 ~~~~~~-----~~~d~vv~~ag~~~~-~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~-~~~~~v~~ss~~~~g~ 127 (328)
T TIGR01179 63 DRLFEE-----HKIDAVIHFAGLIAV-G----ESVQDPLKYYRNNVVNTLNLLEAMQQ----T-GVKKFIFSSSAAVYGE 127 (328)
T ss_pred HHHHHh-----CCCcEEEECccccCc-c----hhhcCchhhhhhhHHHHHHHHHHHHh----c-CCCEEEEecchhhcCC
Confidence 888763 479999999997541 1 12234557789999999999887533 2 3468999887521110
Q ss_pred ----------CCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCC
Q 010380 339 ----------STPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTD 382 (512)
Q Consensus 339 ----------~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~ 382 (512)
+......|+.+|++.+.+++.++.+. .++++..+.|+.+-.+
T Consensus 128 ~~~~~~~e~~~~~~~~~y~~sK~~~e~~~~~~~~~~--~~~~~~ilR~~~v~g~ 179 (328)
T TIGR01179 128 PSSIPISEDSPLGPINPYGRSKLMSERILRDLSKAD--PGLSYVILRYFNVAGA 179 (328)
T ss_pred CCCCCccccCCCCCCCchHHHHHHHHHHHHHHHHhc--cCCCEEEEecCcccCC
Confidence 11134679999999999999987762 3789999999887765
|
This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately. |
| >PLN02686 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.2e-13 Score=138.44 Aligned_cols=181 Identities=14% Similarity=0.076 Sum_probs=125.8
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
...++|+|+||||+|+||.+++++|+++|++|+++.|+.+..+.+ +++... .+ .......+.++.+|+
T Consensus 49 ~~~~~k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r~~~~~~~l-~~l~~~-~~----------~~~~~~~~~~v~~Dl 116 (367)
T PLN02686 49 ADAEARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVDTQEDKEKL-REMEMF-GE----------MGRSNDGIWTVMANL 116 (367)
T ss_pred cCCCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HHHhhh-cc----------ccccCCceEEEEcCC
Confidence 456789999999999999999999999999999989987654433 222110 00 000012577899999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|.+++.++++ .+|.+||.|+...+.. ... ..+...++|+.+..++++++... .+-.++|++||
T Consensus 117 ~d~~~l~~~i~-------~~d~V~hlA~~~~~~~-~~~----~~~~~~~~nv~gt~~llea~~~~----~~v~r~V~~SS 180 (367)
T PLN02686 117 TEPESLHEAFD-------GCAGVFHTSAFVDPAG-LSG----YTKSMAELEAKASENVIEACVRT----ESVRKCVFTSS 180 (367)
T ss_pred CCHHHHHHHHH-------hccEEEecCeeecccc-ccc----ccchhhhhhHHHHHHHHHHHHhc----CCccEEEEecc
Confidence 99999888775 3688889888754211 111 11244678888888888876432 12347999988
Q ss_pred CCCC-C-----CC----------------CCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcc
Q 010380 333 AGSG-G-----SS----------------TPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLL 384 (512)
Q Consensus 333 ~~a~-~-----~~----------------~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~ 384 (512)
..+. . .. ......|+.||.+.+.+++.++.+ .|+++++++|+.|..|..
T Consensus 181 ~~~~vyg~~~~~~~~~~i~E~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gl~~v~lRp~~vyGp~~ 251 (367)
T PLN02686 181 LLACVWRQNYPHDLPPVIDEESWSDESFCRDNKLWYALGKLKAEKAAWRAARG---KGLKLATICPALVTGPGF 251 (367)
T ss_pred HHHhcccccCCCCCCcccCCCCCCChhhcccccchHHHHHHHHHHHHHHHHHh---cCceEEEEcCCceECCCC
Confidence 5211 0 00 012346999999999999888776 489999999999999853
|
|
| >PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.3e-13 Score=135.42 Aligned_cols=172 Identities=20% Similarity=0.242 Sum_probs=123.6
Q ss_pred EEEECCCChHHHHHHHHHHHCCC-EEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhhH
Q 010380 180 VVITGSTRGLGKALAREFLLSGD-RVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPADV 258 (512)
Q Consensus 180 vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~sv 258 (512)
||||||+|-||.+++++|++.+. +|++++|++.++-++..++.+..+.. .....+.++.+|++|.+.+
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~-----------~v~~~~~~vigDvrd~~~l 69 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDP-----------KVRFEIVPVIGDVRDKERL 69 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--T-----------TCEEEEE--CTSCCHHHHH
T ss_pred CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhccccc-----------CcccccCceeecccCHHHH
Confidence 69999999999999999999994 89999999999988888876533210 0012345678899999999
Q ss_pred HHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCC
Q 010380 259 QKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGS 338 (512)
Q Consensus 259 ~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~~~ 338 (512)
..++++. ++|+++|.|+.-. -++.+. ...+.+++|++|+.++++++..+ +-.++|++|+- .
T Consensus 70 ~~~~~~~-----~pdiVfHaAA~Kh--Vpl~E~---~p~eav~tNv~GT~nv~~aa~~~-----~v~~~v~ISTD----K 130 (293)
T PF02719_consen 70 NRIFEEY-----KPDIVFHAAALKH--VPLMED---NPFEAVKTNVLGTQNVAEAAIEH-----GVERFVFISTD----K 130 (293)
T ss_dssp HHHTT-------T-SEEEE--------HHHHCC---CHHHHHHHHCHHHHHHHHHHHHT-----T-SEEEEEEEC----G
T ss_pred HHHHhhc-----CCCEEEEChhcCC--CChHHh---CHHHHHHHHHHHHHHHHHHHHHc-----CCCEEEEcccc----c
Confidence 9888754 7999999999754 344443 34678999999999999998775 34589999864 2
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccC
Q 010380 339 STPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLT 381 (512)
Q Consensus 339 ~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T 381 (512)
...+...||+||...+.+..+.+......+.++.+|.=|.|--
T Consensus 131 Av~PtnvmGatKrlaE~l~~~~~~~~~~~~t~f~~VRFGNVlg 173 (293)
T PF02719_consen 131 AVNPTNVMGATKRLAEKLVQAANQYSGNSDTKFSSVRFGNVLG 173 (293)
T ss_dssp CSS--SHHHHHHHHHHHHHHHHCCTSSSS--EEEEEEE-EETT
T ss_pred cCCCCcHHHHHHHHHHHHHHHHhhhCCCCCcEEEEEEecceec
Confidence 2345689999999999999999998877789999999998863
|
The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A. |
| >TIGR01746 Thioester-redct thioester reductase domain | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.3e-12 Score=129.63 Aligned_cols=177 Identities=19% Similarity=0.220 Sum_probs=116.8
Q ss_pred EEEEECCCChHHHHHHHHHHHCC--CEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChh
Q 010380 179 NVVITGSTRGLGKALAREFLLSG--DRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPA 256 (512)
Q Consensus 179 ~vLVTGassGIG~aiA~~La~~G--a~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~ 256 (512)
+|+||||+|+||.+++++|+++| ++|+++.|+.+... ..+.+.+....... ........++.++.+|++++.
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R~~~~~~-~~~~l~~~~~~~~~-----~~~~~~~~~v~~~~~D~~~~~ 74 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVRAASEEH-AMERLREALRSYRL-----WQEDLARERIEVVAGDLSEPR 74 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEccCCHHH-HHHHHHHHHHHhCC-----CCchhhhCCEEEEeCCcCccc
Confidence 47999999999999999999999 78999999865321 12222221111000 000000147889999998763
Q ss_pred h---HHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 257 D---VQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 257 s---v~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
- -.. ...+ ...+|++||||+.... . ..++..+++|+.++..+++.+... +..+++++||.
T Consensus 75 ~gl~~~~-~~~~---~~~~d~vih~a~~~~~-~-------~~~~~~~~~nv~g~~~ll~~a~~~-----~~~~~v~iSS~ 137 (367)
T TIGR01746 75 LGLSDAE-WERL---AENVDTIVHNGALVNW-V-------YPYSELRAANVLGTREVLRLAASG-----RAKPLHYVSTI 137 (367)
T ss_pred CCcCHHH-HHHH---HhhCCEEEeCCcEecc-C-------CcHHHHhhhhhHHHHHHHHHHhhC-----CCceEEEEccc
Confidence 1 111 1122 2469999999997541 1 235677889999999988876542 23469999887
Q ss_pred CCCCCC---------------CCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCC
Q 010380 334 GSGGSS---------------TPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTD 382 (512)
Q Consensus 334 ~a~~~~---------------~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~ 382 (512)
...... ......|+.||.+.+.+.+.++. .|++++++.||.+..+
T Consensus 138 ~v~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~----~g~~~~i~Rpg~v~G~ 197 (367)
T TIGR01746 138 SVLAAIDLSTVTEDDAIVTPPPGLAGGYAQSKWVAELLVREASD----RGLPVTIVRPGRILGN 197 (367)
T ss_pred cccCCcCCCCccccccccccccccCCChHHHHHHHHHHHHHHHh----cCCCEEEECCCceeec
Confidence 322110 01134799999999998876554 3899999999999876
|
It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold. |
| >PLN02427 UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.5e-12 Score=132.22 Aligned_cols=173 Identities=10% Similarity=0.108 Sum_probs=119.8
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHC-CCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLS-GDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~-Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
+.+.++|+||||+|.||..++++|+++ |++|++++|+.++......... .....++.++.+|+
T Consensus 11 ~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~----------------~~~~~~~~~~~~Dl 74 (386)
T PLN02427 11 PIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDT----------------VPWSGRIQFHRINI 74 (386)
T ss_pred cccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhcccc----------------ccCCCCeEEEEcCC
Confidence 355678999999999999999999998 5899999987654332111000 00123688999999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|.+++.++++ .+|+|||+|+...+ ... .. +-...+..|+.+..++++++.. . + .++|++||
T Consensus 75 ~d~~~l~~~~~-------~~d~ViHlAa~~~~-~~~-~~---~~~~~~~~n~~gt~~ll~aa~~----~-~-~r~v~~SS 136 (386)
T PLN02427 75 KHDSRLEGLIK-------MADLTINLAAICTP-ADY-NT---RPLDTIYSNFIDALPVVKYCSE----N-N-KRLIHFST 136 (386)
T ss_pred CChHHHHHHhh-------cCCEEEEcccccCh-hhh-hh---ChHHHHHHHHHHHHHHHHHHHh----c-C-CEEEEEee
Confidence 99988877654 37999999997541 111 11 1234466899999988887643 2 2 58999988
Q ss_pred CCCCCC--------CCC------------------------CcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCccc
Q 010380 333 AGSGGS--------STP------------------------LTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVL 380 (512)
Q Consensus 333 ~~a~~~--------~~p------------------------~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~ 380 (512)
...... ..| ....|+.||.+.+.++..++.. .|+.+..+.|+.|-
T Consensus 137 ~~vYg~~~~~~~~e~~p~~~~~~~~~~~e~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~g~~~~ilR~~~vy 213 (386)
T PLN02427 137 CEVYGKTIGSFLPKDHPLRQDPAFYVLKEDESPCIFGSIEKQRWSYACAKQLIERLIYAEGAE---NGLEFTIVRPFNWI 213 (386)
T ss_pred eeeeCCCcCCCCCcccccccccccccccccccccccCCCCccccchHHHHHHHHHHHHHHHhh---cCCceEEeccccee
Confidence 521100 000 1236999999999998876544 47999999999888
Q ss_pred CCc
Q 010380 381 TDL 383 (512)
Q Consensus 381 T~~ 383 (512)
-|-
T Consensus 214 Gp~ 216 (386)
T PLN02427 214 GPR 216 (386)
T ss_pred CCC
Confidence 764
|
|
| >COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1e-11 Score=122.83 Aligned_cols=170 Identities=13% Similarity=0.154 Sum_probs=128.2
Q ss_pred CEEEEECCCChHHHHHHHHHHHCCC--EEEEEEcCh--hhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 178 RNVVITGSTRGLGKALAREFLLSGD--RVVVASRSS--ESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~Ga--~Vvl~~R~~--~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
+.+|||||.|.||.++++.+.++.. +|+.++.-. ...+. .+.+. ..++..+++.|++
T Consensus 1 ~~iLVTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLTYAgn~~~-l~~~~------------------~~~~~~fv~~DI~ 61 (340)
T COG1088 1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYAGNLEN-LADVE------------------DSPRYRFVQGDIC 61 (340)
T ss_pred CcEEEecCcchHHHHHHHHHHhcCCCceEEEEecccccCCHHH-HHhhh------------------cCCCceEEecccc
Confidence 4689999999999999999998774 577776531 11111 12221 2368999999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
|.+.+.+++++. .+|++||-|+-.. .+-+.++-+..+++|++|++.|++++..+..+ -+++.||.-
T Consensus 62 D~~~v~~~~~~~-----~~D~VvhfAAESH-----VDRSI~~P~~Fi~TNv~GT~~LLEaar~~~~~----frf~HISTD 127 (340)
T COG1088 62 DRELVDRLFKEY-----QPDAVVHFAAESH-----VDRSIDGPAPFIQTNVVGTYTLLEAARKYWGK----FRFHHISTD 127 (340)
T ss_pred CHHHHHHHHHhc-----CCCeEEEechhcc-----ccccccChhhhhhcchHHHHHHHHHHHHhccc----ceEEEeccc
Confidence 999998888754 7999999998665 34455666788999999999999999887643 368888752
Q ss_pred C------------CCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCc
Q 010380 334 G------------SGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDL 383 (512)
Q Consensus 334 ~------------a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~ 383 (512)
. ....+..+.++|+||||+-..|+++..+-+ |+.+....+..---|-
T Consensus 128 EVYG~l~~~~~~FtE~tp~~PsSPYSASKAasD~lVray~~TY---glp~~ItrcSNNYGPy 186 (340)
T COG1088 128 EVYGDLGLDDDAFTETTPYNPSSPYSASKAASDLLVRAYVRTY---GLPATITRCSNNYGPY 186 (340)
T ss_pred cccccccCCCCCcccCCCCCCCCCcchhhhhHHHHHHHHHHHc---CCceEEecCCCCcCCC
Confidence 1 112345667899999999999999999987 7888888886665553
|
|
| >PF08643 DUF1776: Fungal family of unknown function (DUF1776); InterPro: IPR013952 This is a fungal protein of unknown function | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.7e-11 Score=122.00 Aligned_cols=187 Identities=17% Similarity=0.181 Sum_probs=151.5
Q ss_pred CCEEEEECC-CChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCCh
Q 010380 177 PRNVVITGS-TRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEP 255 (512)
Q Consensus 177 gk~vLVTGa-ssGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~ 255 (512)
.++|||.|. +.-|++.+|..|-++|+-|+++..+.++.+...++ ....+.....|..|+
T Consensus 3 ~evVvI~Gs~~~PltR~la~DLeRRGFIV~v~~~~~ed~~~ve~e--------------------~~~dI~~L~ld~~~~ 62 (299)
T PF08643_consen 3 KEVVVIAGSPHDPLTRSLALDLERRGFIVYVTVSSAEDEKYVESE--------------------DRPDIRPLWLDDSDP 62 (299)
T ss_pred eeEEEEECCCCCccHHHHHHHHhhCCeEEEEEeCCHHHHHHHHhc--------------------cCCCCCCcccCCCCC
Confidence 468899996 79999999999999999999999998765433222 124577888899888
Q ss_pred hhHHHHHHHHHHHcC--------------CCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhC
Q 010380 256 ADVQKLSNFAVNEFG--------------SIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQ 321 (512)
Q Consensus 256 ~sv~~~~~~i~~~~g--------------~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~ 321 (512)
.++...+.++.+.+. .+..||.......+.+|+++++.+.|.+.+++|++-++.+++.++|+|+.+
T Consensus 63 ~~~~~~l~~f~~~L~~p~~p~~~~~~h~l~L~svi~~Psl~yp~gPie~i~~s~~~~~ln~~ll~~~~~~q~lLPlL~~~ 142 (299)
T PF08643_consen 63 SSIHASLSRFASLLSRPHVPFPGAPPHHLQLKSVIFIPSLSYPTGPIETISPSSWADELNTRLLTPILTIQGLLPLLRSR 142 (299)
T ss_pred cchHHHHHHHHHHhcCCCCCCCCCCCceeEEEEEEEecCCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 888888777776554 344555555544567899999999999999999999999999999999983
Q ss_pred C-CCCeEEeecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCc
Q 010380 322 P-KGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDL 383 (512)
Q Consensus 322 ~-~~g~IV~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~ 383 (512)
. ++..||.+.-........|..+.-.....++.+|++.|++|+.+.+|.|..+.-|.++-..
T Consensus 143 ~~~~~~iil~~Psi~ssl~~PfhspE~~~~~al~~~~~~LrrEl~~~~I~V~~i~LG~l~i~~ 205 (299)
T PF08643_consen 143 SNQKSKIILFNPSISSSLNPPFHSPESIVSSALSSFFTSLRRELRPHNIDVTQIKLGNLDIGN 205 (299)
T ss_pred cCCCceEEEEeCchhhccCCCccCHHHHHHHHHHHHHHHHHHHhhhcCCceEEEEeeeecccc
Confidence 2 3456666653335667789999999999999999999999999999999999999998663
|
One of the proteins P32792 from SWISSPROT has been localised to the mitochondria []. |
| >PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.1e-11 Score=130.99 Aligned_cols=165 Identities=12% Similarity=0.119 Sum_probs=117.7
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHH--HHHHHHHHHhhhhhhcCCCCcccccCceEEEEEcc
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRM--TVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACD 251 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~--~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~D 251 (512)
..++++++||||+|+||.+++++|+++|++|++++|+..+.+. ..+++.. ...++.++.+|
T Consensus 57 ~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~-----------------~~~~v~~v~~D 119 (390)
T PLN02657 57 EPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKK-----------------ELPGAEVVFGD 119 (390)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhh-----------------hcCCceEEEee
Confidence 3567899999999999999999999999999999998765421 1111111 12357889999
Q ss_pred CCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeec
Q 010380 252 VCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD 331 (512)
Q Consensus 252 ltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vS 331 (512)
++|++++.++++.+ .+++|+||||+|... .. . ...+++|+.+..++++++. +. +.+++|++|
T Consensus 120 l~d~~~l~~~~~~~---~~~~D~Vi~~aa~~~--~~----~----~~~~~vn~~~~~~ll~aa~----~~-gv~r~V~iS 181 (390)
T PLN02657 120 VTDADSLRKVLFSE---GDPVDVVVSCLASRT--GG----V----KDSWKIDYQATKNSLDAGR----EV-GAKHFVLLS 181 (390)
T ss_pred CCCHHHHHHHHHHh---CCCCcEEEECCccCC--CC----C----ccchhhHHHHHHHHHHHHH----Hc-CCCEEEEEe
Confidence 99999999887643 126999999998532 11 1 1235678888877777653 33 456899999
Q ss_pred CCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCC
Q 010380 332 GAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTD 382 (512)
Q Consensus 332 S~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~ 382 (512)
|.. .. .....|..+|...+...+. ...|+++..+.|+.+-.+
T Consensus 182 S~~-v~---~p~~~~~~sK~~~E~~l~~-----~~~gl~~tIlRp~~~~~~ 223 (390)
T PLN02657 182 AIC-VQ---KPLLEFQRAKLKFEAELQA-----LDSDFTYSIVRPTAFFKS 223 (390)
T ss_pred ecc-cc---CcchHHHHHHHHHHHHHHh-----ccCCCCEEEEccHHHhcc
Confidence 873 22 2345688899988776543 245899999999876543
|
|
| >PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor | Back alignment and domain information |
|---|
Probab=99.33 E-value=5e-11 Score=115.59 Aligned_cols=164 Identities=26% Similarity=0.278 Sum_probs=126.9
Q ss_pred EEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhhHH
Q 010380 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPADVQ 259 (512)
Q Consensus 180 vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~sv~ 259 (512)
|+||||+|-||.+++++|+++|+.|+.+.|+.......... .++.++.+|+.|.++++
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~----------------------~~~~~~~~dl~~~~~~~ 58 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGHEVIVLSRSSNSESFEEKK----------------------LNVEFVIGDLTDKEQLE 58 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTTEEEEEESCSTGGHHHHHH----------------------TTEEEEESETTSHHHHH
T ss_pred EEEEccCCHHHHHHHHHHHHcCCcccccccccccccccccc----------------------ceEEEEEeecccccccc
Confidence 69999999999999999999999999888876543221111 26888999999999999
Q ss_pred HHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCC
Q 010380 260 KLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSS 339 (512)
Q Consensus 260 ~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~~~~ 339 (512)
++++.. .+|.+||+|+... ...+.+.....++.|+.+..++.+++... +..++|++||.......
T Consensus 59 ~~~~~~-----~~d~vi~~a~~~~-----~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-----~~~~~i~~sS~~~y~~~ 123 (236)
T PF01370_consen 59 KLLEKA-----NIDVVIHLAAFSS-----NPESFEDPEEIIEANVQGTRNLLEAAREA-----GVKRFIFLSSASVYGDP 123 (236)
T ss_dssp HHHHHH-----TESEEEEEBSSSS-----HHHHHHSHHHHHHHHHHHHHHHHHHHHHH-----TTSEEEEEEEGGGGTSS
T ss_pred cccccc-----CceEEEEeecccc-----ccccccccccccccccccccccccccccc-----ccccccccccccccccc
Confidence 998876 7999999998742 11223566788889998888888877643 23589999886321111
Q ss_pred --C--------CCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCc
Q 010380 340 --T--------PLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDL 383 (512)
Q Consensus 340 --~--------p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~ 383 (512)
. .....|+.+|...+.+.+.+..+. ++++..+.|+.+--|.
T Consensus 124 ~~~~~~e~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~~~R~~~vyG~~ 174 (236)
T PF01370_consen 124 DGEPIDEDSPINPLSPYGASKRAAEELLRDYAKKY---GLRVTILRPPNVYGPG 174 (236)
T ss_dssp SSSSBETTSGCCHSSHHHHHHHHHHHHHHHHHHHH---TSEEEEEEESEEESTT
T ss_pred ccccccccccccccccccccccccccccccccccc---cccccccccccccccc
Confidence 1 134569999999999999998876 7999999999998776
|
The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B .... |
| >PLN02695 GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Probab=99.31 E-value=4e-11 Score=125.80 Aligned_cols=175 Identities=15% Similarity=0.076 Sum_probs=123.7
Q ss_pred ccccccCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEE
Q 010380 167 MVLEEHCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVA 246 (512)
Q Consensus 167 ~~~~~~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~ 246 (512)
+..+..+.-++++|+||||+|.||.++++.|.++|++|++++|..... +.. ....+.
T Consensus 11 ~~~~~~~~~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~------~~~-----------------~~~~~~ 67 (370)
T PLN02695 11 LEREPYWPSEKLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEH------MSE-----------------DMFCHE 67 (370)
T ss_pred cCCCCCCCCCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEeccccc------ccc-----------------ccccce
Confidence 344455566789999999999999999999999999999999864321 000 011245
Q ss_pred EEEccCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCe
Q 010380 247 GIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGH 326 (512)
Q Consensus 247 ~v~~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~ 326 (512)
++.+|++|.+.+.++++ .+|+|||.|+...+ ..... .+....+..|+.++.++.+++... +..+
T Consensus 68 ~~~~Dl~d~~~~~~~~~-------~~D~Vih~Aa~~~~-~~~~~---~~~~~~~~~N~~~t~nll~aa~~~-----~vk~ 131 (370)
T PLN02695 68 FHLVDLRVMENCLKVTK-------GVDHVFNLAADMGG-MGFIQ---SNHSVIMYNNTMISFNMLEAARIN-----GVKR 131 (370)
T ss_pred EEECCCCCHHHHHHHHh-------CCCEEEEcccccCC-ccccc---cCchhhHHHHHHHHHHHHHHHHHh-----CCCE
Confidence 68899999877666543 58999999986431 11111 122345778999999998876432 3458
Q ss_pred EEeecCCCCCC----------------CCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCc
Q 010380 327 IFNMDGAGSGG----------------SSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDL 383 (512)
Q Consensus 327 IV~vSS~~a~~----------------~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~ 383 (512)
+|++||..... .+..+...|+.+|.+.+.+++.++..+ |+++..+.|+.|--|-
T Consensus 132 ~V~~SS~~vYg~~~~~~~~~~~~E~~~~p~~p~s~Yg~sK~~~E~~~~~~~~~~---g~~~~ilR~~~vyGp~ 201 (370)
T PLN02695 132 FFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLATEELCKHYTKDF---GIECRIGRFHNIYGPF 201 (370)
T ss_pred EEEeCchhhcCCccccCcCCCcCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHh---CCCEEEEEECCccCCC
Confidence 99998852110 022345689999999999998877654 7999999999888763
|
|
| >PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.6e-11 Score=122.61 Aligned_cols=165 Identities=16% Similarity=0.164 Sum_probs=120.8
Q ss_pred EEECCCChHHHHHHHHHHHCC--CEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhhH
Q 010380 181 VITGSTRGLGKALAREFLLSG--DRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPADV 258 (512)
Q Consensus 181 LVTGassGIG~aiA~~La~~G--a~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~sv 258 (512)
|||||+|-||.+++++|+++| ++|.++++...... ...+.. .....++.+|++|++++
T Consensus 1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~--~~~~~~------------------~~~~~~~~~Di~d~~~l 60 (280)
T PF01073_consen 1 LVTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKF--LKDLQK------------------SGVKEYIQGDITDPESL 60 (280)
T ss_pred CEEcCCcHHHHHHHHHHHHCCCceEEEEccccccccc--chhhhc------------------ccceeEEEeccccHHHH
Confidence 699999999999999999999 78988888765421 111111 12233899999999999
Q ss_pred HHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCC
Q 010380 259 QKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGS 338 (512)
Q Consensus 259 ~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~~~ 338 (512)
.++++ ..|+|||.|+...... ....+.++++|+.|+-++++++... +-.++|++||......
T Consensus 61 ~~a~~-------g~d~V~H~Aa~~~~~~------~~~~~~~~~vNV~GT~nvl~aa~~~-----~VkrlVytSS~~vv~~ 122 (280)
T PF01073_consen 61 EEALE-------GVDVVFHTAAPVPPWG------DYPPEEYYKVNVDGTRNVLEAARKA-----GVKRLVYTSSISVVFD 122 (280)
T ss_pred HHHhc-------CCceEEEeCccccccC------cccHHHHHHHHHHHHHHHHHHHHHc-----CCCEEEEEcCcceeEe
Confidence 88876 5799999999754211 3456889999999999999988643 4568999998743221
Q ss_pred ---CC-------------CCcchhhHHHHHHHHHHHHHHH-HhC-CCCeEEEEEeCCcccCCc
Q 010380 339 ---ST-------------PLTAVYGSTKCGLRQLQASLFK-ESK-RSKVGVHTASPGMVLTDL 383 (512)
Q Consensus 339 ---~~-------------p~~~~Y~aSKaAl~~l~~sLa~-El~-~~GIrVn~V~PG~V~T~~ 383 (512)
+. .....|+.||+..+.++..... ++. +..++..+|+|..|--|-
T Consensus 123 ~~~~~~~~~~dE~~~~~~~~~~~Y~~SK~~AE~~V~~a~~~~~~~g~~l~t~~lRP~~IyGp~ 185 (280)
T PF01073_consen 123 NYKGDPIINGDEDTPYPSSPLDPYAESKALAEKAVLEANGSELKNGGRLRTCALRPAGIYGPG 185 (280)
T ss_pred ccCCCCcccCCcCCcccccccCchHHHHHHHHHHHHhhcccccccccceeEEEEeccEEeCcc
Confidence 10 1234799999999998877554 222 124899999998887664
|
3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process |
| >COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.5e-11 Score=117.18 Aligned_cols=157 Identities=18% Similarity=0.179 Sum_probs=118.1
Q ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhh
Q 010380 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPAD 257 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~s 257 (512)
++||||||.|-||..++.+|++.|++|++++.-.....+.+... .+.+++.|+.|.+.
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~~G~~vvV~DNL~~g~~~~v~~~----------------------~~~f~~gDi~D~~~ 58 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLKTGHEVVVLDNLSNGHKIALLKL----------------------QFKFYEGDLLDRAL 58 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCCHHHhhhc----------------------cCceEEeccccHHH
Confidence 36899999999999999999999999999988654433332221 15689999999999
Q ss_pred HHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCCC
Q 010380 258 VQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGG 337 (512)
Q Consensus 258 v~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~~ 337 (512)
+++++++. +||.|||.||... ...+.+.-.+.++-|+.|++.|++++... +-..|||-||++...
T Consensus 59 L~~vf~~~-----~idaViHFAa~~~-----VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~-----gv~~~vFSStAavYG 123 (329)
T COG1087 59 LTAVFEEN-----KIDAVVHFAASIS-----VGESVQNPLKYYDNNVVGTLNLIEAMLQT-----GVKKFIFSSTAAVYG 123 (329)
T ss_pred HHHHHHhc-----CCCEEEECccccc-----cchhhhCHHHHHhhchHhHHHHHHHHHHh-----CCCEEEEecchhhcC
Confidence 99988764 8999999999754 22455667789999999999998776544 345688877753211
Q ss_pred ----------CCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEE
Q 010380 338 ----------SSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTA 374 (512)
Q Consensus 338 ----------~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V 374 (512)
.+.....+|+.||...+.+.+.+++... .++.++
T Consensus 124 ~p~~~PI~E~~~~~p~NPYG~sKlm~E~iL~d~~~a~~---~~~v~L 167 (329)
T COG1087 124 EPTTSPISETSPLAPINPYGRSKLMSEEILRDAAKANP---FKVVIL 167 (329)
T ss_pred CCCCcccCCCCCCCCCCcchhHHHHHHHHHHHHHHhCC---CcEEEE
Confidence 1122446899999999999999988764 444444
|
|
| >PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=4e-11 Score=121.97 Aligned_cols=161 Identities=12% Similarity=0.141 Sum_probs=110.2
Q ss_pred EEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhhHH
Q 010380 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPADVQ 259 (512)
Q Consensus 180 vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~sv~ 259 (512)
|+||||+|.||.+++++|+++|++++++.|+....... .. ...+|+.|..+.+
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g~~~v~~~~~~~~~~~~-~~--------------------------~~~~~~~d~~~~~ 54 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKF-VN--------------------------LVDLDIADYMDKE 54 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCCCceEEEecCCCcchHH-Hh--------------------------hhhhhhhhhhhHH
Confidence 69999999999999999999999777666654321110 00 1235777766666
Q ss_pred HHHHHHHH--HcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCCC
Q 010380 260 KLSNFAVN--EFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGG 337 (512)
Q Consensus 260 ~~~~~i~~--~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~~ 337 (512)
.+++.+.+ .++++|+|||+||... .. +.+. +..+++|+.++.++++++.. . + .++|++||.....
T Consensus 55 ~~~~~~~~~~~~~~~d~Vih~A~~~~-~~---~~~~---~~~~~~n~~~t~~ll~~~~~----~-~-~~~i~~SS~~vyg 121 (308)
T PRK11150 55 DFLAQIMAGDDFGDIEAIFHEGACSS-TT---EWDG---KYMMDNNYQYSKELLHYCLE----R-E-IPFLYASSAATYG 121 (308)
T ss_pred HHHHHHhcccccCCccEEEECceecC-Cc---CCCh---HHHHHHHHHHHHHHHHHHHH----c-C-CcEEEEcchHHhC
Confidence 66555442 3457999999999643 11 1222 34689999999998888743 2 2 3699998862111
Q ss_pred C----------CCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCc
Q 010380 338 S----------STPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDL 383 (512)
Q Consensus 338 ~----------~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~ 383 (512)
. +..+...|+.||.+.+.+.+.++.+. ++.+.++.|+.|--|-
T Consensus 122 ~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~~lR~~~vyG~~ 174 (308)
T PRK11150 122 GRTDDFIEEREYEKPLNVYGYSKFLFDEYVRQILPEA---NSQICGFRYFNVYGPR 174 (308)
T ss_pred cCCCCCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHc---CCCEEEEeeeeecCCC
Confidence 0 11234679999999999988876553 6888999998877653
|
|
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=99.27 E-value=8.9e-11 Score=132.38 Aligned_cols=172 Identities=16% Similarity=0.153 Sum_probs=121.6
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHHC--CCEEEEEEcCh--hhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEc
Q 010380 175 AGPRNVVITGSTRGLGKALAREFLLS--GDRVVVASRSS--ESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIAC 250 (512)
Q Consensus 175 l~gk~vLVTGassGIG~aiA~~La~~--Ga~Vvl~~R~~--~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~ 250 (512)
.++|+||||||+|.||.+++++|+++ |++|+.++|.. +... .+... ....++.++.+
T Consensus 4 ~~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~~~~~~~~~----~l~~~---------------~~~~~v~~~~~ 64 (668)
T PLN02260 4 YEPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSNLK----NLNPS---------------KSSPNFKFVKG 64 (668)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeCCCccchhh----hhhhc---------------ccCCCeEEEEC
Confidence 46789999999999999999999998 67899888753 1111 11110 01246888999
Q ss_pred cCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEee
Q 010380 251 DVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNM 330 (512)
Q Consensus 251 Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~v 330 (512)
|++|.+.+..++.. ..+|+|||+|+.... +...++....+++|+.++.++++++.. .+...++|++
T Consensus 65 Dl~d~~~~~~~~~~-----~~~D~ViHlAa~~~~-----~~~~~~~~~~~~~Nv~gt~~ll~a~~~----~~~vkr~I~~ 130 (668)
T PLN02260 65 DIASADLVNYLLIT-----EGIDTIMHFAAQTHV-----DNSFGNSFEFTKNNIYGTHVLLEACKV----TGQIRRFIHV 130 (668)
T ss_pred CCCChHHHHHHHhh-----cCCCEEEECCCccCc-----hhhhhCHHHHHHHHHHHHHHHHHHHHh----cCCCcEEEEE
Confidence 99998887665432 379999999997541 111223356789999999998887643 2124589999
Q ss_pred cCCCCCCC-------------CCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCC
Q 010380 331 DGAGSGGS-------------STPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTD 382 (512)
Q Consensus 331 SS~~a~~~-------------~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~ 382 (512)
||...... +..+...|+.||.+.+.+.+.+..++ ++.+.++.|+.|--|
T Consensus 131 SS~~vyg~~~~~~~~~~~E~~~~~p~~~Y~~sK~~aE~~v~~~~~~~---~l~~vilR~~~VyGp 192 (668)
T PLN02260 131 STDEVYGETDEDADVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSY---GLPVITTRGNNVYGP 192 (668)
T ss_pred cchHHhCCCccccccCccccCCCCCCCCcHHHHHHHHHHHHHHHHHc---CCCEEEECcccccCc
Confidence 98521100 11134579999999999999887764 688899999888755
|
|
| >TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase | Back alignment and domain information |
|---|
Probab=99.25 E-value=9.7e-11 Score=118.94 Aligned_cols=162 Identities=15% Similarity=0.087 Sum_probs=111.9
Q ss_pred EEEECCCChHHHHHHHHHHHCCC-EEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhhH
Q 010380 180 VVITGSTRGLGKALAREFLLSGD-RVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPADV 258 (512)
Q Consensus 180 vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~sv 258 (512)
|+||||+|.||.++++.|.++|+ +|++++|..... .+.+ . ....+..|+.+.+.+
T Consensus 1 ilItGatG~iG~~l~~~L~~~g~~~v~~~~~~~~~~-----~~~~-----------------~--~~~~~~~d~~~~~~~ 56 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGITDILVVDNLRDGH-----KFLN-----------------L--ADLVIADYIDKEDFL 56 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHcCCceEEEEecCCCch-----hhhh-----------------h--hheeeeccCcchhHH
Confidence 58999999999999999999998 788887764321 1111 0 012456788887776
Q ss_pred HHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCC
Q 010380 259 QKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGS 338 (512)
Q Consensus 259 ~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~~~ 338 (512)
+.+.+. .+.++|+|||+|+... .+.++.+..+++|+.+..++.+++... +.++|++||.. ...
T Consensus 57 ~~~~~~---~~~~~D~vvh~A~~~~-------~~~~~~~~~~~~n~~~~~~ll~~~~~~------~~~~v~~SS~~-vy~ 119 (314)
T TIGR02197 57 DRLEKG---AFGKIEAIFHQGACSD-------TTETDGEYMMENNYQYSKRLLDWCAEK------GIPFIYASSAA-TYG 119 (314)
T ss_pred HHHHhh---ccCCCCEEEECccccC-------ccccchHHHHHHHHHHHHHHHHHHHHh------CCcEEEEccHH-hcC
Confidence 665442 3468999999999643 122345778899999999998887542 24799998862 211
Q ss_pred C-----------CCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCc
Q 010380 339 S-----------TPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDL 383 (512)
Q Consensus 339 ~-----------~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~ 383 (512)
. ..+...|+.||.+.+.+++....+. ..++.+..+.|+.|--+-
T Consensus 120 ~~~~~~~e~~~~~~p~~~Y~~sK~~~e~~~~~~~~~~-~~~~~~~~lR~~~vyG~~ 174 (314)
T TIGR02197 120 DGEAGFREGRELERPLNVYGYSKFLFDQYVRRRVLPE-ALSAQVVGLRYFNVYGPR 174 (314)
T ss_pred CCCCCcccccCcCCCCCHHHHHHHHHHHHHHHHhHhh-ccCCceEEEEEeeccCCC
Confidence 0 1145689999999999987643322 225778888887776553
|
This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370). |
| >PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.2e-10 Score=120.66 Aligned_cols=162 Identities=12% Similarity=0.107 Sum_probs=113.8
Q ss_pred CEEEEECCCChHHHHHHHHHHHC-CCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC-Ch
Q 010380 178 RNVVITGSTRGLGKALAREFLLS-GDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC-EP 255 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~-Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt-d~ 255 (512)
++|+||||+|-||..++++|+++ |++|++++|+.+... .+. ....+.++.+|++ +.
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~~~----~~~------------------~~~~~~~~~~Dl~~~~ 59 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRLG----DLV------------------NHPRMHFFEGDITINK 59 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHHHH----Hhc------------------cCCCeEEEeCCCCCCH
Confidence 46999999999999999999986 699999998764322 111 1235888999998 55
Q ss_pred hhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCC
Q 010380 256 ADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGS 335 (512)
Q Consensus 256 ~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a 335 (512)
+.+.++++ .+|+|||+|+...+ .. ..++.+..+++|+.+..++.+++.. . + .++|++||...
T Consensus 60 ~~~~~~~~-------~~d~ViH~aa~~~~-~~----~~~~p~~~~~~n~~~~~~ll~aa~~----~-~-~~~v~~SS~~v 121 (347)
T PRK11908 60 EWIEYHVK-------KCDVILPLVAIATP-AT----YVKQPLRVFELDFEANLPIVRSAVK----Y-G-KHLVFPSTSEV 121 (347)
T ss_pred HHHHHHHc-------CCCEEEECcccCCh-HH----hhcCcHHHHHHHHHHHHHHHHHHHh----c-C-CeEEEEeccee
Confidence 55544432 58999999997541 11 1123356789999999988887643 2 2 58999988621
Q ss_pred CCC--C-------C--------CCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCC
Q 010380 336 GGS--S-------T--------PLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTD 382 (512)
Q Consensus 336 ~~~--~-------~--------p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~ 382 (512)
... . . .....|+.||.+.+.+.+.++.+. |+.+..+.|+.+--|
T Consensus 122 yg~~~~~~~~ee~~~~~~~~~~~p~~~Y~~sK~~~e~~~~~~~~~~---~~~~~ilR~~~v~Gp 182 (347)
T PRK11908 122 YGMCPDEEFDPEASPLVYGPINKPRWIYACSKQLMDRVIWAYGMEE---GLNFTLFRPFNWIGP 182 (347)
T ss_pred eccCCCcCcCccccccccCcCCCccchHHHHHHHHHHHHHHHHHHc---CCCeEEEeeeeeeCC
Confidence 110 0 0 112369999999999998877653 678888888777554
|
|
| >PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.24 E-value=1e-10 Score=131.68 Aligned_cols=165 Identities=12% Similarity=0.088 Sum_probs=118.5
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHHC-CCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 175 AGPRNVVITGSTRGLGKALAREFLLS-GDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 175 l~gk~vLVTGassGIG~aiA~~La~~-Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
..+++|+||||+|.||.+++++|+++ |++|+.++|+...... +. ...++.++.+|++
T Consensus 313 ~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r~~~~~~~----~~------------------~~~~~~~~~gDl~ 370 (660)
T PRK08125 313 KRRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIGSDAISR----FL------------------GHPRFHFVEGDIS 370 (660)
T ss_pred hcCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeCCchhhhh----hc------------------CCCceEEEecccc
Confidence 35789999999999999999999986 7999999997643211 10 1135788899999
Q ss_pred Chhh-HHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 254 EPAD-VQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 254 d~~s-v~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
|.++ +++++ ..+|+|||.|+...+.. ..++.+..+++|+.+..++.+++... + .++|++||
T Consensus 371 d~~~~l~~~l-------~~~D~ViHlAa~~~~~~-----~~~~~~~~~~~Nv~~t~~ll~a~~~~-----~-~~~V~~SS 432 (660)
T PRK08125 371 IHSEWIEYHI-------KKCDVVLPLVAIATPIE-----YTRNPLRVFELDFEENLKIIRYCVKY-----N-KRIIFPST 432 (660)
T ss_pred CcHHHHHHHh-------cCCCEEEECccccCchh-----hccCHHHHHHhhHHHHHHHHHHHHhc-----C-CeEEEEcc
Confidence 8665 33333 25899999999754211 11223457899999999998887542 2 47999988
Q ss_pred CCCCCC----C----------CC---CcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCC
Q 010380 333 AGSGGS----S----------TP---LTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTD 382 (512)
Q Consensus 333 ~~a~~~----~----------~p---~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~ 382 (512)
...... + .| ....|+.||.+.+.+.+.++.++ |+++..+.|+.|--|
T Consensus 433 ~~vyg~~~~~~~~E~~~~~~~~p~~~p~s~Yg~sK~~~E~~~~~~~~~~---g~~~~ilR~~~vyGp 496 (660)
T PRK08125 433 SEVYGMCTDKYFDEDTSNLIVGPINKQRWIYSVSKQLLDRVIWAYGEKE---GLRFTLFRPFNWMGP 496 (660)
T ss_pred hhhcCCCCCCCcCccccccccCCCCCCccchHHHHHHHHHHHHHHHHhc---CCceEEEEEceeeCC
Confidence 521110 0 01 12469999999999999887664 689999999988765
|
|
| >COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.5e-10 Score=117.13 Aligned_cols=162 Identities=17% Similarity=0.131 Sum_probs=117.3
Q ss_pred EEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhhHH
Q 010380 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPADVQ 259 (512)
Q Consensus 180 vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~sv~ 259 (512)
||||||+|.||..++++|.++|++|+.++|...+..... ..+.++.+|++|.+.+.
T Consensus 3 ILVtG~tGfiG~~l~~~L~~~g~~V~~~~r~~~~~~~~~------------------------~~~~~~~~d~~~~~~~~ 58 (314)
T COG0451 3 ILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDGLDPLL------------------------SGVEFVVLDLTDRDLVD 58 (314)
T ss_pred EEEEcCcccHHHHHHHHHHhCCCeEEEEeCCCccccccc------------------------cccceeeecccchHHHH
Confidence 899999999999999999999999999999866532111 25677899999985555
Q ss_pred HHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCC
Q 010380 260 KLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSS 339 (512)
Q Consensus 260 ~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~~~~ 339 (512)
...+.. . |++||+|+.... . .. ... .....+++|+.++.++.+++.. . +..++|+.||.......
T Consensus 59 ~~~~~~-----~-d~vih~aa~~~~-~-~~-~~~-~~~~~~~~nv~gt~~ll~aa~~----~-~~~~~v~~ss~~~~~~~ 123 (314)
T COG0451 59 ELAKGV-----P-DAVIHLAAQSSV-P-DS-NAS-DPAEFLDVNVDGTLNLLEAARA----A-GVKRFVFASSVSVVYGD 123 (314)
T ss_pred HHHhcC-----C-CEEEEccccCch-h-hh-hhh-CHHHHHHHHHHHHHHHHHHHHH----c-CCCeEEEeCCCceECCC
Confidence 444321 1 999999998652 1 11 111 4567899999999999998866 1 34578886664211111
Q ss_pred ----------CCCcc--hhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCc
Q 010380 340 ----------TPLTA--VYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDL 383 (512)
Q Consensus 340 ----------~p~~~--~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~ 383 (512)
.+..+ .|+.||.+.+.++..... ..|+.+.++.|+.|--|.
T Consensus 124 ~~~~~~~E~~~~~~p~~~Yg~sK~~~E~~~~~~~~---~~~~~~~ilR~~~vyGp~ 176 (314)
T COG0451 124 PPPLPIDEDLGPPRPLNPYGVSKLAAEQLLRAYAR---LYGLPVVILRPFNVYGPG 176 (314)
T ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHHHHHHHH---HhCCCeEEEeeeeeeCCC
Confidence 11112 499999999999999888 457999999998776554
|
|
| >PLN02206 UDP-glucuronate decarboxylase | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.8e-10 Score=122.15 Aligned_cols=164 Identities=20% Similarity=0.189 Sum_probs=113.4
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCC
Q 010380 175 AGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCE 254 (512)
Q Consensus 175 l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd 254 (512)
-++++|+||||+|.||..++++|+++|++|++++|......+ .+.... ...++.++..|+.+
T Consensus 117 ~~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld~~~~~~~~---~~~~~~---------------~~~~~~~i~~D~~~ 178 (442)
T PLN02206 117 RKGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVDNFFTGRKE---NVMHHF---------------SNPNFELIRHDVVE 178 (442)
T ss_pred cCCCEEEEECcccHHHHHHHHHHHHCcCEEEEEeCCCccchh---hhhhhc---------------cCCceEEEECCccC
Confidence 467889999999999999999999999999999875432111 111100 12356778889876
Q ss_pred hhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCC
Q 010380 255 PADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAG 334 (512)
Q Consensus 255 ~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~ 334 (512)
.. + ..+|+|||.|+...+ . ..+ ++....+++|+.++.++.+++... +.++|++||..
T Consensus 179 ~~-----l-------~~~D~ViHlAa~~~~-~-~~~---~~p~~~~~~Nv~gt~nLleaa~~~------g~r~V~~SS~~ 235 (442)
T PLN02206 179 PI-----L-------LEVDQIYHLACPASP-V-HYK---FNPVKTIKTNVVGTLNMLGLAKRV------GARFLLTSTSE 235 (442)
T ss_pred hh-----h-------cCCCEEEEeeeecch-h-hhh---cCHHHHHHHHHHHHHHHHHHHHHh------CCEEEEECChH
Confidence 52 1 258999999987541 1 111 234578899999999998887542 23799998863
Q ss_pred CCCC---------------CCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCC
Q 010380 335 SGGS---------------STPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTD 382 (512)
Q Consensus 335 a~~~---------------~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~ 382 (512)
.... +......|+.||.+.+.+++.+..+. |+.+..+.|+.|--|
T Consensus 236 VYg~~~~~p~~E~~~~~~~P~~~~s~Y~~SK~~aE~~~~~y~~~~---g~~~~ilR~~~vyGp 295 (442)
T PLN02206 236 VYGDPLQHPQVETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGA---NVEVRIARIFNTYGP 295 (442)
T ss_pred HhCCCCCCCCCccccccCCCCCccchHHHHHHHHHHHHHHHHHHh---CCCeEEEEeccccCC
Confidence 1110 11124679999999999888876654 688888888766544
|
|
| >KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.2e-10 Score=113.78 Aligned_cols=160 Identities=18% Similarity=0.153 Sum_probs=121.6
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChh
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPA 256 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~ 256 (512)
+++||||||+|-||.+++.+|.++|+.|++++.-........+.+++... .+.++.++..|+.|.+
T Consensus 2 ~~~VLVtGgaGyiGsht~l~L~~~gy~v~~vDNl~n~~~~sl~r~~~l~~--------------~~~~v~f~~~Dl~D~~ 67 (343)
T KOG1371|consen 2 GKHVLVTGGAGYIGSHTVLALLKRGYGVVIVDNLNNSYLESLKRVRQLLG--------------EGKSVFFVEGDLNDAE 67 (343)
T ss_pred CcEEEEecCCcceehHHHHHHHhCCCcEEEEecccccchhHHHHHHHhcC--------------CCCceEEEEeccCCHH
Confidence 67899999999999999999999999999998654444444444444322 2468999999999999
Q ss_pred hHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCC
Q 010380 257 DVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSG 336 (512)
Q Consensus 257 sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~ 336 (512)
.++++++.. .+|.|+|-|+... .+ .+.+...+..+.|+.|.++++.... +. +-..+|+.||+..-
T Consensus 68 ~L~kvF~~~-----~fd~V~Hfa~~~~-vg----eS~~~p~~Y~~nNi~gtlnlLe~~~----~~-~~~~~V~sssatvY 132 (343)
T KOG1371|consen 68 ALEKLFSEV-----KFDAVMHFAALAA-VG----ESMENPLSYYHNNIAGTLNLLEVMK----AH-NVKALVFSSSATVY 132 (343)
T ss_pred HHHHHHhhc-----CCceEEeehhhhc-cc----hhhhCchhheehhhhhHHHHHHHHH----Hc-CCceEEEecceeee
Confidence 999999876 5999999999755 22 2334447788999999999876654 43 25578888876321
Q ss_pred C----------CCCC-CcchhhHHHHHHHHHHHHHHHHhC
Q 010380 337 G----------SSTP-LTAVYGSTKCGLRQLQASLFKESK 365 (512)
Q Consensus 337 ~----------~~~p-~~~~Y~aSKaAl~~l~~sLa~El~ 365 (512)
. .+.. +...|+.+|.+++...+.+..-+.
T Consensus 133 G~p~~ip~te~~~t~~p~~pyg~tK~~iE~i~~d~~~~~~ 172 (343)
T KOG1371|consen 133 GLPTKVPITEEDPTDQPTNPYGKTKKAIEEIIHDYNKAYG 172 (343)
T ss_pred cCcceeeccCcCCCCCCCCcchhhhHHHHHHHHhhhcccc
Confidence 1 1112 567899999999999999888764
|
|
| >TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.8e-10 Score=114.26 Aligned_cols=142 Identities=20% Similarity=0.233 Sum_probs=107.4
Q ss_pred EEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhhHH
Q 010380 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPADVQ 259 (512)
Q Consensus 180 vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~sv~ 259 (512)
++||||+|.||.+++++|+++|++|++++|+ .+|+.|.++++
T Consensus 2 ilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~--------------------------------------~~d~~~~~~~~ 43 (287)
T TIGR01214 2 ILITGANGQLGRELVQQLSPEGRVVVALTSS--------------------------------------QLDLTDPEALE 43 (287)
T ss_pred EEEEcCCCHHHHHHHHHHHhcCCEEEEeCCc--------------------------------------ccCCCCHHHHH
Confidence 7999999999999999999999999998874 24889999888
Q ss_pred HHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCC
Q 010380 260 KLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSS 339 (512)
Q Consensus 260 ~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~~~~ 339 (512)
++++.. .+|++||+||... .. ...+..+..+++|+.++.++.+++.. . +.++|++||.. ...+
T Consensus 44 ~~~~~~-----~~d~vi~~a~~~~-~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~--~~~~v~~Ss~~-vy~~ 106 (287)
T TIGR01214 44 RLLRAI-----RPDAVVNTAAYTD-VD----GAESDPEKAFAVNALAPQNLARAAAR----H--GARLVHISTDY-VFDG 106 (287)
T ss_pred HHHHhC-----CCCEEEECCcccc-cc----ccccCHHHHHHHHHHHHHHHHHHHHH----c--CCeEEEEeeee-eecC
Confidence 887652 6899999999753 11 11223567789999999999888643 2 24799998752 1111
Q ss_pred -----------CCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCc
Q 010380 340 -----------TPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDL 383 (512)
Q Consensus 340 -----------~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~ 383 (512)
......|+.+|.+.+.+.+.+ +..+.++.|+.|-.+.
T Consensus 107 ~~~~~~~E~~~~~~~~~Y~~~K~~~E~~~~~~-------~~~~~ilR~~~v~G~~ 154 (287)
T TIGR01214 107 EGKRPYREDDATNPLNVYGQSKLAGEQAIRAA-------GPNALIVRTSWLYGGG 154 (287)
T ss_pred CCCCCCCCCCCCCCcchhhHHHHHHHHHHHHh-------CCCeEEEEeeecccCC
Confidence 113467999999999887764 4578899999987664
|
This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc. |
| >PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.9e-10 Score=116.37 Aligned_cols=148 Identities=14% Similarity=0.055 Sum_probs=108.0
Q ss_pred EEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhhHHH
Q 010380 181 VITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPADVQK 260 (512)
Q Consensus 181 LVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~sv~~ 260 (512)
+||||+|.||..+++.|+++|++|+++.+. ..+|++|.+++++
T Consensus 1 lItGa~GfiG~~l~~~L~~~g~~v~~~~~~-------------------------------------~~~Dl~~~~~l~~ 43 (306)
T PLN02725 1 FVAGHRGLVGSAIVRKLEALGFTNLVLRTH-------------------------------------KELDLTRQADVEA 43 (306)
T ss_pred CcccCCCcccHHHHHHHHhCCCcEEEeecc-------------------------------------ccCCCCCHHHHHH
Confidence 699999999999999999999988765321 1369999998888
Q ss_pred HHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCC--
Q 010380 261 LSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGS-- 338 (512)
Q Consensus 261 ~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~~~-- 338 (512)
+++.. ++|+|||+|+.... ..- ..++.+..+++|+.++.++++++... +-.++|++||.. ...
T Consensus 44 ~~~~~-----~~d~Vih~A~~~~~-~~~---~~~~~~~~~~~n~~~~~~ll~~~~~~-----~~~~~i~~SS~~-vyg~~ 108 (306)
T PLN02725 44 FFAKE-----KPTYVILAAAKVGG-IHA---NMTYPADFIRENLQIQTNVIDAAYRH-----GVKKLLFLGSSC-IYPKF 108 (306)
T ss_pred HHhcc-----CCCEEEEeeeeecc-cch---hhhCcHHHHHHHhHHHHHHHHHHHHc-----CCCeEEEeCcee-ecCCC
Confidence 76652 68999999997431 100 11223457889999999988887542 245899998852 111
Q ss_pred -------------C-CCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCc
Q 010380 339 -------------S-TPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDL 383 (512)
Q Consensus 339 -------------~-~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~ 383 (512)
+ .|....|+.||.+.+.+.+.+..+. ++++..+.|+.|--+-
T Consensus 109 ~~~~~~E~~~~~~~~~p~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~R~~~vyG~~ 164 (306)
T PLN02725 109 APQPIPETALLTGPPEPTNEWYAIAKIAGIKMCQAYRIQY---GWDAISGMPTNLYGPH 164 (306)
T ss_pred CCCCCCHHHhccCCCCCCcchHHHHHHHHHHHHHHHHHHh---CCCEEEEEecceeCCC
Confidence 0 1112359999999999888877665 6899999999887664
|
|
| >PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.6e-10 Score=116.04 Aligned_cols=145 Identities=19% Similarity=0.147 Sum_probs=102.6
Q ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhhH
Q 010380 179 NVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPADV 258 (512)
Q Consensus 179 ~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~sv 258 (512)
+||||||+|-||.+++++|+++| +|+.++|... .+..|++|.+++
T Consensus 2 ~iLVtG~~GfiGs~l~~~L~~~g-~V~~~~~~~~----------------------------------~~~~Dl~d~~~~ 46 (299)
T PRK09987 2 NILLFGKTGQVGWELQRALAPLG-NLIALDVHST----------------------------------DYCGDFSNPEGV 46 (299)
T ss_pred eEEEECCCCHHHHHHHHHhhccC-CEEEeccccc----------------------------------cccCCCCCHHHH
Confidence 58999999999999999999999 7888877521 134699999998
Q ss_pred HHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCC--
Q 010380 259 QKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSG-- 336 (512)
Q Consensus 259 ~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~-- 336 (512)
+++++.. ++|+|||+|+.... . ...++-+..+.+|+.++.++.+++... +.++|++||....
T Consensus 47 ~~~~~~~-----~~D~Vih~Aa~~~~-~----~~~~~~~~~~~~N~~~~~~l~~aa~~~------g~~~v~~Ss~~Vy~~ 110 (299)
T PRK09987 47 AETVRKI-----RPDVIVNAAAHTAV-D----KAESEPEFAQLLNATSVEAIAKAANEV------GAWVVHYSTDYVFPG 110 (299)
T ss_pred HHHHHhc-----CCCEEEECCccCCc-c----hhhcCHHHHHHHHHHHHHHHHHHHHHc------CCeEEEEccceEECC
Confidence 8877643 58999999997541 1 112233566789999999998877542 2478998874210
Q ss_pred --CC------CCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccC
Q 010380 337 --GS------STPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLT 381 (512)
Q Consensus 337 --~~------~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T 381 (512)
.. +..+...|+.||.+.+.+++.... ....+.|++|--
T Consensus 111 ~~~~p~~E~~~~~P~~~Yg~sK~~~E~~~~~~~~-------~~~ilR~~~vyG 156 (299)
T PRK09987 111 TGDIPWQETDATAPLNVYGETKLAGEKALQEHCA-------KHLIFRTSWVYA 156 (299)
T ss_pred CCCCCcCCCCCCCCCCHHHHHHHHHHHHHHHhCC-------CEEEEecceecC
Confidence 01 112345799999999998865432 235556655553
|
|
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.7e-10 Score=115.01 Aligned_cols=147 Identities=14% Similarity=0.098 Sum_probs=105.8
Q ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhhH
Q 010380 179 NVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPADV 258 (512)
Q Consensus 179 ~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~sv 258 (512)
+|+||||+|.||.+++++|+++|++|++++|+.++.. .+.. ..+.++.+|++|++++
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~----~l~~-------------------~~v~~v~~Dl~d~~~l 58 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKAS----FLKE-------------------WGAELVYGDLSLPETL 58 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhh----hHhh-------------------cCCEEEECCCCCHHHH
Confidence 5899999999999999999999999999999865432 1111 2467899999999888
Q ss_pred HHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCC
Q 010380 259 QKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGS 338 (512)
Q Consensus 259 ~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~~~ 338 (512)
.++++ .+|++||+++... . +.....++|+.++.++.+++.. . +-.++|++||.+...
T Consensus 59 ~~al~-------g~d~Vi~~~~~~~--~--------~~~~~~~~~~~~~~~l~~aa~~----~-gvkr~I~~Ss~~~~~- 115 (317)
T CHL00194 59 PPSFK-------GVTAIIDASTSRP--S--------DLYNAKQIDWDGKLALIEAAKA----A-KIKRFIFFSILNAEQ- 115 (317)
T ss_pred HHHHC-------CCCEEEECCCCCC--C--------CccchhhhhHHHHHHHHHHHHH----c-CCCEEEEeccccccc-
Confidence 76654 5899999876422 1 1223566788888887776643 2 345899998753221
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCccc
Q 010380 339 STPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVL 380 (512)
Q Consensus 339 ~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~ 380 (512)
.+...|..+|...+.+.+ ..|+.+..+.|+.+-
T Consensus 116 --~~~~~~~~~K~~~e~~l~-------~~~l~~tilRp~~~~ 148 (317)
T CHL00194 116 --YPYIPLMKLKSDIEQKLK-------KSGIPYTIFRLAGFF 148 (317)
T ss_pred --cCCChHHHHHHHHHHHHH-------HcCCCeEEEeecHHh
Confidence 123568889988776543 247888999998553
|
|
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=99.14 E-value=6.1e-10 Score=104.38 Aligned_cols=141 Identities=21% Similarity=0.291 Sum_probs=106.0
Q ss_pred EEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhhHH
Q 010380 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPADVQ 259 (512)
Q Consensus 180 vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~sv~ 259 (512)
|+|+||||.+|..++++|+++|++|+++.|++++.++ ..+++++.+|+.|++++.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~-------------------------~~~~~~~~~d~~d~~~~~ 55 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED-------------------------SPGVEIIQGDLFDPDSVK 55 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH-------------------------CTTEEEEESCTTCHHHHH
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc-------------------------ccccccceeeehhhhhhh
Confidence 6899999999999999999999999999999987654 146888999999998877
Q ss_pred HHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCC
Q 010380 260 KLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSS 339 (512)
Q Consensus 260 ~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~~~~ 339 (512)
++++ +.|++|+++|... . + ...++.++..+++. +..++|++|+.+. ...
T Consensus 56 ~al~-------~~d~vi~~~~~~~--~-------~-------------~~~~~~~~~a~~~~-~~~~~v~~s~~~~-~~~ 104 (183)
T PF13460_consen 56 AALK-------GADAVIHAAGPPP--K-------D-------------VDAAKNIIEAAKKA-GVKRVVYLSSAGV-YRD 104 (183)
T ss_dssp HHHT-------TSSEEEECCHSTT--T-------H-------------HHHHHHHHHHHHHT-TSSEEEEEEETTG-TTT
T ss_pred hhhh-------hcchhhhhhhhhc--c-------c-------------cccccccccccccc-ccccceeeecccc-CCC
Confidence 7655 6899999998643 1 1 44556667777766 4669999988743 222
Q ss_pred CCC---------cchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCc
Q 010380 340 TPL---------TAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDL 383 (512)
Q Consensus 340 ~p~---------~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~ 383 (512)
.+. ...|...|...+.+.+ ..+++...+.||++..+.
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~-------~~~~~~~ivrp~~~~~~~ 150 (183)
T PF13460_consen 105 PPGLFSDEDKPIFPEYARDKREAEEALR-------ESGLNWTIVRPGWIYGNP 150 (183)
T ss_dssp CTSEEEGGTCGGGHHHHHHHHHHHHHHH-------HSTSEEEEEEESEEEBTT
T ss_pred CCcccccccccchhhhHHHHHHHHHHHH-------hcCCCEEEEECcEeEeCC
Confidence 222 1256666665544331 238999999999988775
|
... |
| >PLN02166 dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.13 E-value=8.3e-10 Score=118.38 Aligned_cols=164 Identities=19% Similarity=0.168 Sum_probs=113.0
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCC
Q 010380 175 AGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCE 254 (512)
Q Consensus 175 l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd 254 (512)
-++++|+||||+|.||..++++|+++|++|++++|...........+. ...++.++..|+.+
T Consensus 118 ~~~mkILVTGatGFIGs~Lv~~Ll~~G~~V~~ldr~~~~~~~~~~~~~------------------~~~~~~~~~~Di~~ 179 (436)
T PLN02166 118 RKRLRIVVTGGAGFVGSHLVDKLIGRGDEVIVIDNFFTGRKENLVHLF------------------GNPRFELIRHDVVE 179 (436)
T ss_pred cCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCCccHhHhhhhc------------------cCCceEEEECcccc
Confidence 356789999999999999999999999999999986432111111110 11356778888876
Q ss_pred hhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCC
Q 010380 255 PADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAG 334 (512)
Q Consensus 255 ~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~ 334 (512)
.. + ..+|+|||.|+...+ .. .. .+-...+++|+.++.++++++... +.++|++||..
T Consensus 180 ~~-----~-------~~~D~ViHlAa~~~~-~~-~~---~~p~~~~~~Nv~gT~nLleaa~~~------g~r~V~~SS~~ 236 (436)
T PLN02166 180 PI-----L-------LEVDQIYHLACPASP-VH-YK---YNPVKTIKTNVMGTLNMLGLAKRV------GARFLLTSTSE 236 (436)
T ss_pred cc-----c-------cCCCEEEECceeccc-hh-hc---cCHHHHHHHHHHHHHHHHHHHHHh------CCEEEEECcHH
Confidence 42 1 258999999987542 11 11 123578999999999998887543 23799998862
Q ss_pred CCC---------------CCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCC
Q 010380 335 SGG---------------SSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTD 382 (512)
Q Consensus 335 a~~---------------~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~ 382 (512)
... .+......|+.||.+.+.+++...+.. ++.+..+.|+.|--|
T Consensus 237 VYg~~~~~p~~E~~~~~~~p~~p~s~Yg~SK~~aE~~~~~y~~~~---~l~~~ilR~~~vYGp 296 (436)
T PLN02166 237 VYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLAMDYHRGA---GVEVRIARIFNTYGP 296 (436)
T ss_pred HhCCCCCCCCCccccccCCCCCCCCchHHHHHHHHHHHHHHHHHh---CCCeEEEEEccccCC
Confidence 110 011124569999999999998876653 688888888766654
|
|
| >KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.2e-09 Score=122.35 Aligned_cols=168 Identities=16% Similarity=0.208 Sum_probs=137.0
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcChhhHH---HHHHHHHHHHhhhhhhcCCCCcccccCceEEEE
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRSSESVR---MTVTELEENLKEGMMAAGGSSKKNLVHAKVAGI 248 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~~~l~---~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v 248 (512)
+....|.++|+||-||+|+++|.+|..+|+ ++++++|+.-+-. ..+...++ .|.++.+-
T Consensus 1764 ~~hpeksYii~GGLGGFGLELaqWLi~RGar~lVLtSRsGirtGYQa~~vrrWr~-----------------~GVqV~vs 1826 (2376)
T KOG1202|consen 1764 YCHPEKSYIIVGGLGGFGLELAQWLIQRGARKLVLTSRSGIRTGYQALMVRRWRR-----------------RGVQVQVS 1826 (2376)
T ss_pred hcCccceEEEeccccchhHHHHHHHHhcCceEEEEeccccchhhHHHHHHHHHHh-----------------cCeEEEEe
Confidence 344568899999999999999999999999 5899999844322 22333333 57788888
Q ss_pred EccCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEE
Q 010380 249 ACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIF 328 (512)
Q Consensus 249 ~~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV 328 (512)
..|++..+..+.++++. .+.+++-.++|-|.+.. ++.+++.+++.|+.+-+..+.|+.++-+.-...-.. -..+|
T Consensus 1827 T~nitt~~ga~~Li~~s-~kl~~vGGiFnLA~VLR-D~LiEnQt~knFk~va~pK~~~Ti~LD~~sRe~C~~---LdyFv 1901 (2376)
T KOG1202|consen 1827 TSNITTAEGARGLIEES-NKLGPVGGIFNLAAVLR-DGLIENQTPKNFKDVAKPKYSGTINLDRVSREICPE---LDYFV 1901 (2376)
T ss_pred cccchhhhhHHHHHHHh-hhcccccchhhHHHHHH-hhhhcccChhHHHhhhccceeeeeehhhhhhhhCcc---cceEE
Confidence 88999999999998865 56789999999999988 799999999999999999999999987766554332 23688
Q ss_pred eecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHH
Q 010380 329 NMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKE 363 (512)
Q Consensus 329 ~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~E 363 (512)
.+||. +...++.++..|+-++.+++.+.+.=+.+
T Consensus 1902 ~FSSv-scGRGN~GQtNYG~aNS~MERiceqRr~~ 1935 (2376)
T KOG1202|consen 1902 VFSSV-SCGRGNAGQTNYGLANSAMERICEQRRHE 1935 (2376)
T ss_pred EEEee-cccCCCCcccccchhhHHHHHHHHHhhhc
Confidence 88888 67788999999999999999998864443
|
|
| >PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila | Back alignment and domain information |
|---|
Probab=99.06 E-value=7e-10 Score=109.94 Aligned_cols=177 Identities=19% Similarity=0.208 Sum_probs=100.2
Q ss_pred EECCCChHHHHHHHHHHHCCC--EEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChh-hH
Q 010380 182 ITGSTRGLGKALAREFLLSGD--RVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPA-DV 258 (512)
Q Consensus 182 VTGassGIG~aiA~~La~~Ga--~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~-sv 258 (512)
||||||-||..+.++|++++. +|+++.|..+.. ...+.+.+...+..... ........+++++..|++++. .+
T Consensus 1 lTGaTGflG~~ll~~Ll~~~~~~~I~cLvR~~~~~-~~~~rl~~~l~~~~~~~---~~~~~~~~ri~~v~GDl~~~~lGL 76 (249)
T PF07993_consen 1 LTGATGFLGSHLLEELLRQPPDVKIYCLVRASSSQ-SALERLKDALKEYGLWD---DLDKEALSRIEVVEGDLSQPNLGL 76 (249)
T ss_dssp EE-TTSHHHHHHHHHHHHHS-TTEEEEEE-SSSHH-HHHHHHHGGG-SS-HHH---HH-HHHTTTEEEEE--TTSGGGG-
T ss_pred CcCCCcHHHHHHHHHHHcCCCCcEEEEEEeCcccc-cchhhhhhhcccccchh---hhhhhhhccEEEEeccccccccCC
Confidence 799999999999999999986 999999976432 22333322211100000 000002468999999999865 11
Q ss_pred -HHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCCC
Q 010380 259 -QKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGG 337 (512)
Q Consensus 259 -~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~~ 337 (512)
....+++.+ .+|++||||+...... .++...++|+.|+.++++.+.. . +..+++++||.....
T Consensus 77 ~~~~~~~L~~---~v~~IiH~Aa~v~~~~--------~~~~~~~~NV~gt~~ll~la~~----~-~~~~~~~iSTa~v~~ 140 (249)
T PF07993_consen 77 SDEDYQELAE---EVDVIIHCAASVNFNA--------PYSELRAVNVDGTRNLLRLAAQ----G-KRKRFHYISTAYVAG 140 (249)
T ss_dssp -HHHHHHHHH---H--EEEE--SS-SBS---------S--EEHHHHHHHHHHHHHHHTS----S-S---EEEEEEGGGTT
T ss_pred ChHHhhcccc---ccceeeecchhhhhcc--------cchhhhhhHHHHHHHHHHHHHh----c-cCcceEEeccccccC
Confidence 111222222 5899999999765211 3445778999999999887752 2 233899999842111
Q ss_pred -CC------------------CCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccC
Q 010380 338 -SS------------------TPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLT 381 (512)
Q Consensus 338 -~~------------------~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T 381 (512)
.. ......|..||..-+.+.+..+.+. |+.+..+.||.|-.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~gY~~SK~~aE~~l~~a~~~~---g~p~~I~Rp~~i~g 200 (249)
T PF07993_consen 141 SRPGTIEEKVYPEEEDDLDPPQGFPNGYEQSKWVAERLLREAAQRH---GLPVTIYRPGIIVG 200 (249)
T ss_dssp S-TTT--SSS-HHH--EEE--TTSEE-HHHHHHHHHHHHHHHHHHH------EEEEEE-EEE-
T ss_pred CCCCcccccccccccccchhhccCCccHHHHHHHHHHHHHHHHhcC---CceEEEEecCcccc
Confidence 11 1223579999999999999888764 78999999999876
|
A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A. |
| >TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.8e-10 Score=110.60 Aligned_cols=101 Identities=19% Similarity=0.222 Sum_probs=79.6
Q ss_pred EEEEECC-CChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhh
Q 010380 179 NVVITGS-TRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPAD 257 (512)
Q Consensus 179 ~vLVTGa-ssGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~s 257 (512)
+=.||.. +||||+++|++|+++|++|+++++... +.. .. ...||+++.++
T Consensus 16 VR~itN~SSGgIG~AIA~~la~~Ga~Vvlv~~~~~--------l~~-----------------~~----~~~~Dv~d~~s 66 (227)
T TIGR02114 16 VRSITNHSTGHLGKIITETFLSAGHEVTLVTTKRA--------LKP-----------------EP----HPNLSIREIET 66 (227)
T ss_pred ceeecCCcccHHHHHHHHHHHHCCCEEEEEcChhh--------ccc-----------------cc----CCcceeecHHH
Confidence 3355655 679999999999999999999876311 100 00 14589999999
Q ss_pred HHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHH
Q 010380 258 VQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTR 312 (512)
Q Consensus 258 v~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k 312 (512)
++++++.+.+.++++|+||||||+.. ..++.+.+.++|++++ ..+.|++++
T Consensus 67 ~~~l~~~v~~~~g~iDiLVnnAgv~d-~~~~~~~s~e~~~~~~---~~~~~~~~~ 117 (227)
T TIGR02114 67 TKDLLITLKELVQEHDILIHSMAVSD-YTPVYMTDLEQVQASD---NLNEFLSKQ 117 (227)
T ss_pred HHHHHHHHHHHcCCCCEEEECCEecc-ccchhhCCHHHHhhhc---chhhhhccc
Confidence 99999999999999999999999876 6888999999999774 446666665
|
In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity. |
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=4e-09 Score=118.47 Aligned_cols=164 Identities=20% Similarity=0.199 Sum_probs=111.3
Q ss_pred EEEEECCCChHHHHHHHHHH--HCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChh
Q 010380 179 NVVITGSTRGLGKALAREFL--LSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPA 256 (512)
Q Consensus 179 ~vLVTGassGIG~aiA~~La--~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~ 256 (512)
+|+||||+|.||.+++++|+ ++|++|++++|+.... . ...+.... ...++.++.+|++|++
T Consensus 2 ~ILVTGatGfIG~~lv~~Ll~~~~g~~V~~l~R~~~~~-~-~~~~~~~~---------------~~~~v~~~~~Dl~~~~ 64 (657)
T PRK07201 2 RYFVTGGTGFIGRRLVSRLLDRRREATVHVLVRRQSLS-R-LEALAAYW---------------GADRVVPLVGDLTEPG 64 (657)
T ss_pred eEEEeCCccHHHHHHHHHHHhcCCCCEEEEEECcchHH-H-HHHHHHhc---------------CCCcEEEEecccCCcc
Confidence 58999999999999999999 5899999999975321 1 11221110 1146888999999864
Q ss_pred hH--HHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCC
Q 010380 257 DV--QKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAG 334 (512)
Q Consensus 257 sv--~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~ 334 (512)
.. ....+.+ ..+|++||+||... .. . ..+...++|+.+..++.+++.. . +..++|++||..
T Consensus 65 ~~~~~~~~~~l----~~~D~Vih~Aa~~~-~~----~---~~~~~~~~nv~gt~~ll~~a~~----~-~~~~~v~~SS~~ 127 (657)
T PRK07201 65 LGLSEADIAEL----GDIDHVVHLAAIYD-LT----A---DEEAQRAANVDGTRNVVELAER----L-QAATFHHVSSIA 127 (657)
T ss_pred CCcCHHHHHHh----cCCCEEEECceeec-CC----C---CHHHHHHHHhHHHHHHHHHHHh----c-CCCeEEEEeccc
Confidence 21 1112222 47999999999754 11 1 2345678999998888777643 2 345899998863
Q ss_pred CCCC------------CCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCC
Q 010380 335 SGGS------------STPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTD 382 (512)
Q Consensus 335 a~~~------------~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~ 382 (512)
.... +.+....|+.||...+.+.+. ..|+.+..+.|+.|-.+
T Consensus 128 v~g~~~~~~~e~~~~~~~~~~~~Y~~sK~~~E~~~~~------~~g~~~~ilRp~~v~G~ 181 (657)
T PRK07201 128 VAGDYEGVFREDDFDEGQGLPTPYHRTKFEAEKLVRE------ECGLPWRVYRPAVVVGD 181 (657)
T ss_pred cccCccCccccccchhhcCCCCchHHHHHHHHHHHHH------cCCCcEEEEcCCeeeec
Confidence 2110 011235699999999988753 24799999999988654
|
|
| >PLN02996 fatty acyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.5e-09 Score=115.27 Aligned_cols=184 Identities=20% Similarity=0.208 Sum_probs=116.9
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC---CEEEEEEcChhh--H-HHHHHHHHHH--HhhhhhhcCCCCcccccCceEE
Q 010380 175 AGPRNVVITGSTRGLGKALAREFLLSG---DRVVVASRSSES--V-RMTVTELEEN--LKEGMMAAGGSSKKNLVHAKVA 246 (512)
Q Consensus 175 l~gk~vLVTGassGIG~aiA~~La~~G---a~Vvl~~R~~~~--l-~~~~~el~~~--~~~~~~~~g~~~~~~~~g~~v~ 246 (512)
++||+|+||||||.||..+++.|++.+ .+|+++.|..+. . +....++.+. ........+ .........++.
T Consensus 9 ~~~k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~LvR~~~~~~~~~rl~~~~~~~~~f~~~~~~~~-~~~~~~~~~kv~ 87 (491)
T PLN02996 9 LENKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASDAKSATQRLHDEVIGKDLFKVLREKLG-ENLNSLISEKVT 87 (491)
T ss_pred hCCCeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCCHHHHHHHHHhhchHHHHHHHhcc-hhhhhhhhcCEE
Confidence 578999999999999999999999865 368888886532 1 1111121110 000000000 000001125789
Q ss_pred EEEccCCCh-------hhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 010380 247 GIACDVCEP-------ADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMR 319 (512)
Q Consensus 247 ~v~~Dltd~-------~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~ 319 (512)
++..|++++ +.++.+++ .+|+|||+|+... . . +..+..+++|+.|+.++.+++...
T Consensus 88 ~i~GDl~~~~LGLs~~~~~~~l~~-------~vD~ViH~AA~v~-~---~----~~~~~~~~~Nv~gt~~ll~~a~~~-- 150 (491)
T PLN02996 88 PVPGDISYDDLGVKDSNLREEMWK-------EIDIVVNLAATTN-F---D----ERYDVALGINTLGALNVLNFAKKC-- 150 (491)
T ss_pred EEecccCCcCCCCChHHHHHHHHh-------CCCEEEECccccC-C---c----CCHHHHHHHHHHHHHHHHHHHHhc--
Confidence 999999854 33333332 5899999999754 1 1 245778999999999998877542
Q ss_pred hCCCCCeEEeecCCCCCCC-C-------CC--------------------------------------------------
Q 010380 320 DQPKGGHIFNMDGAGSGGS-S-------TP-------------------------------------------------- 341 (512)
Q Consensus 320 ~~~~~g~IV~vSS~~a~~~-~-------~p-------------------------------------------------- 341 (512)
.+-.++|++||...... . .+
T Consensus 151 --~~~k~~V~vST~~vyG~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (491)
T PLN02996 151 --VKVKMLLHVSTAYVCGEKSGLILEKPFHMGETLNGNRKLDINEEKKLVKEKLKELNEQDASEEEITQAMKDLGMERAK 228 (491)
T ss_pred --CCCCeEEEEeeeEEecCCCceeeeecCCCcccccccccCChHHHHHHHHHHHHHHHhhcCCHHHHHHHhhhhchhHHH
Confidence 12347899887532110 0 00
Q ss_pred ---CcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCc
Q 010380 342 ---LTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDL 383 (512)
Q Consensus 342 ---~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~ 383 (512)
....|+.||++.+.+++..+ .|+.+..+.|+.|-.+.
T Consensus 229 ~~~~pn~Y~~TK~~aE~lv~~~~-----~~lpv~i~RP~~V~G~~ 268 (491)
T PLN02996 229 LHGWPNTYVFTKAMGEMLLGNFK-----ENLPLVIIRPTMITSTY 268 (491)
T ss_pred hCCCCCchHhhHHHHHHHHHHhc-----CCCCEEEECCCEeccCC
Confidence 11359999999999986542 27999999999997664
|
|
| >PRK05865 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.7e-09 Score=119.73 Aligned_cols=130 Identities=17% Similarity=0.210 Sum_probs=99.9
Q ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhhH
Q 010380 179 NVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPADV 258 (512)
Q Consensus 179 ~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~sv 258 (512)
+++||||+|.||.+++++|+++|++|++++|+.... ...++.++.+|++|.+++
T Consensus 2 kILVTGATGfIGs~La~~Ll~~G~~Vv~l~R~~~~~--------------------------~~~~v~~v~gDL~D~~~l 55 (854)
T PRK05865 2 RIAVTGASGVLGRGLTARLLSQGHEVVGIARHRPDS--------------------------WPSSADFIAADIRDATAV 55 (854)
T ss_pred EEEEECCCCHHHHHHHHHHHHCcCEEEEEECCchhh--------------------------cccCceEEEeeCCCHHHH
Confidence 589999999999999999999999999999974321 012467789999999988
Q ss_pred HHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCC
Q 010380 259 QKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGS 338 (512)
Q Consensus 259 ~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~~~ 338 (512)
.++++ .+|+|||+|+... + .+++|+.++.++++++ .+. +.++||++||. .
T Consensus 56 ~~al~-------~vD~VVHlAa~~~---~-----------~~~vNv~GT~nLLeAa----~~~-gvkr~V~iSS~-~--- 105 (854)
T PRK05865 56 ESAMT-------GADVVAHCAWVRG---R-----------NDHINIDGTANVLKAM----AET-GTGRIVFTSSG-H--- 105 (854)
T ss_pred HHHHh-------CCCEEEECCCccc---c-----------hHHHHHHHHHHHHHHH----HHc-CCCeEEEECCc-H---
Confidence 87765 4899999998632 1 3678999988776554 443 35689999875 1
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCC
Q 010380 339 STPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTD 382 (512)
Q Consensus 339 ~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~ 382 (512)
|.+.+.+.+ + .|+.+..+.|+.|--|
T Consensus 106 -----------K~aaE~ll~----~---~gl~~vILRp~~VYGP 131 (854)
T PRK05865 106 -----------QPRVEQMLA----D---CGLEWVAVRCALIFGR 131 (854)
T ss_pred -----------HHHHHHHHH----H---cCCCEEEEEeceEeCC
Confidence 777776553 2 4789999999888755
|
|
| >PLN02778 3,5-epimerase/4-reductase | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.3e-08 Score=101.95 Aligned_cols=132 Identities=14% Similarity=0.077 Sum_probs=87.4
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChh
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPA 256 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~ 256 (512)
.+++|||||+|.||..+++.|+++|++|++..+ |+.|.+
T Consensus 9 ~~kiLVtG~tGfiG~~l~~~L~~~g~~V~~~~~-----------------------------------------~~~~~~ 47 (298)
T PLN02778 9 TLKFLIYGKTGWIGGLLGKLCQEQGIDFHYGSG-----------------------------------------RLENRA 47 (298)
T ss_pred CCeEEEECCCCHHHHHHHHHHHhCCCEEEEecC-----------------------------------------ccCCHH
Confidence 467999999999999999999999999875321 333444
Q ss_pred hHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC-CC
Q 010380 257 DVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA-GS 335 (512)
Q Consensus 257 sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~-~a 335 (512)
.+...++. .++|+|||+||.... .. .+...++-...+++|+.++.++++++... +- +.+++||. ..
T Consensus 48 ~v~~~l~~-----~~~D~ViH~Aa~~~~-~~-~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~-----gv-~~v~~sS~~vy 114 (298)
T PLN02778 48 SLEADIDA-----VKPTHVFNAAGVTGR-PN-VDWCESHKVETIRANVVGTLTLADVCRER-----GL-VLTNYATGCIF 114 (298)
T ss_pred HHHHHHHh-----cCCCEEEECCcccCC-CC-chhhhhCHHHHHHHHHHHHHHHHHHHHHh-----CC-CEEEEecceEe
Confidence 44444332 268999999997541 11 11122345678999999999999988543 12 24444432 11
Q ss_pred CC----------------CCCCCcchhhHHHHHHHHHHHHHHH
Q 010380 336 GG----------------SSTPLTAVYGSTKCGLRQLQASLFK 362 (512)
Q Consensus 336 ~~----------------~~~p~~~~Y~aSKaAl~~l~~sLa~ 362 (512)
+. .+.+....|+.||.+.+.+++..+.
T Consensus 115 ~~~~~~p~~~~~~~~Ee~~p~~~~s~Yg~sK~~~E~~~~~y~~ 157 (298)
T PLN02778 115 EYDDAHPLGSGIGFKEEDTPNFTGSFYSKTKAMVEELLKNYEN 157 (298)
T ss_pred CCCCCCCcccCCCCCcCCCCCCCCCchHHHHHHHHHHHHHhhc
Confidence 10 0112235799999999999887653
|
|
| >COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.8e-08 Score=101.16 Aligned_cols=176 Identities=24% Similarity=0.293 Sum_probs=119.3
Q ss_pred CEEEEECCCChHHHHHHHHHHHCC-CEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChh
Q 010380 178 RNVVITGSTRGLGKALAREFLLSG-DRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPA 256 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~G-a~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~ 256 (512)
+++++|||||-||..+.++|+.+- ++|++..|-.+. +.+.+.|.+.... ..........++.++..|++.++
T Consensus 1 ~~vlLTGATGFLG~yLl~eLL~~~~~kv~cLVRA~s~-E~a~~RL~~~~~~------~~~~~e~~~~ri~vv~gDl~e~~ 73 (382)
T COG3320 1 RNVLLTGATGFLGAYLLLELLDRSDAKVICLVRAQSD-EAALARLEKTFDL------YRHWDELSADRVEVVAGDLAEPD 73 (382)
T ss_pred CeEEEecCchHhHHHHHHHHHhcCCCcEEEEEecCCH-HHHHHHHHHHhhh------hhhhhhhhcceEEEEeccccccc
Confidence 578999999999999999998765 599988885432 2233344333220 00111225679999999999433
Q ss_pred ------hHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEee
Q 010380 257 ------DVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNM 330 (512)
Q Consensus 257 ------sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~v 330 (512)
..+++.+ .+|.+||||....... ...+....|+.|...+.+.+.. .+...+.+|
T Consensus 74 lGL~~~~~~~La~-------~vD~I~H~gA~Vn~v~--------pYs~L~~~NVlGT~evlrLa~~-----gk~Kp~~yV 133 (382)
T COG3320 74 LGLSERTWQELAE-------NVDLIIHNAALVNHVF--------PYSELRGANVLGTAEVLRLAAT-----GKPKPLHYV 133 (382)
T ss_pred CCCCHHHHHHHhh-------hcceEEecchhhcccC--------cHHHhcCcchHhHHHHHHHHhc-----CCCceeEEE
Confidence 3333333 5899999999765322 2466778999999988887643 234458888
Q ss_pred cCCCCCCCC-------------------CCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcc
Q 010380 331 DGAGSGGSS-------------------TPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLL 384 (512)
Q Consensus 331 SS~~a~~~~-------------------~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~ 384 (512)
||+...... ......|+.||.+.+.+++.... .|++|..+.||+|--+-.
T Consensus 134 Ssisv~~~~~~~~~~~~~~~~~~~~~~~~~~~~GY~~SKwvaE~Lvr~A~~----rGLpv~I~Rpg~I~gds~ 202 (382)
T COG3320 134 SSISVGETEYYSNFTVDFDEISPTRNVGQGLAGGYGRSKWVAEKLVREAGD----RGLPVTIFRPGYITGDSR 202 (382)
T ss_pred eeeeeccccccCCCccccccccccccccCccCCCcchhHHHHHHHHHHHhh----cCCCeEEEecCeeeccCc
Confidence 886322111 12236799999998888776443 489999999999975543
|
|
| >KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.4e-07 Score=85.88 Aligned_cols=183 Identities=16% Similarity=0.127 Sum_probs=125.7
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChh
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPA 256 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~ 256 (512)
...|+|-||-+.+|.+++..|-.+++-|.-++-.+.+- ...-+.+..|-+=.+
T Consensus 3 agrVivYGGkGALGSacv~~FkannywV~siDl~eNe~---------------------------Ad~sI~V~~~~swtE 55 (236)
T KOG4022|consen 3 AGRVIVYGGKGALGSACVEFFKANNYWVLSIDLSENEQ---------------------------ADSSILVDGNKSWTE 55 (236)
T ss_pred CceEEEEcCcchHhHHHHHHHHhcCeEEEEEeeccccc---------------------------ccceEEecCCcchhH
Confidence 45689999999999999999999999988777654321 011223344444345
Q ss_pred hHHHHHHHHHHHc--CCCcccccccccCCCCCCCcCCC-HHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 257 DVQKLSNFAVNEF--GSIDIWINNAGTNKGFKPLLQFT-NEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 257 sv~~~~~~i~~~~--g~IDvLInnAG~~~~~~~~~~~s-~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
+-+.+.+++-+.+ .++|.+++-||...+ +....-+ ...-+.++.-.+.....-.+.+..+++ .|-++.+..+
T Consensus 56 Qe~~v~~~vg~sL~gekvDav~CVAGGWAG-GnAksKdl~KNaDLMwKQSvwtSaIsa~lAt~HLK----~GGLL~LtGA 130 (236)
T KOG4022|consen 56 QEQSVLEQVGSSLQGEKVDAVFCVAGGWAG-GNAKSKDLVKNADLMWKQSVWTSAISAKLATTHLK----PGGLLQLTGA 130 (236)
T ss_pred HHHHHHHHHHHhhcccccceEEEeeccccC-CCcchhhhhhchhhHHHHHHHHHHHHHHHHHhccC----CCceeeeccc
Confidence 5666666666554 369999999997652 2221111 112233444444444444455555554 3456666666
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHHhC--CCCeEEEEEeCCcccCCcccCCcchh
Q 010380 334 GSGGSSTPLTAVYGSTKCGLRQLQASLFKESK--RSKVGVHTASPGMVLTDLLLSGSTIQ 391 (512)
Q Consensus 334 ~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~--~~GIrVn~V~PG~V~T~~~~~~~~~~ 391 (512)
.+...+.|+...|+.+|+|+.+++++|+.+-. +.|--+.+|.|=..+|||.++..+..
T Consensus 131 kaAl~gTPgMIGYGMAKaAVHqLt~SLaak~SGlP~gsaa~~ilPVTLDTPMNRKwMP~A 190 (236)
T KOG4022|consen 131 KAALGGTPGMIGYGMAKAAVHQLTSSLAAKDSGLPDGSAALTILPVTLDTPMNRKWMPNA 190 (236)
T ss_pred ccccCCCCcccchhHHHHHHHHHHHHhcccccCCCCCceeEEEeeeeccCccccccCCCC
Confidence 67888999999999999999999999998854 56788999999999999987655443
|
|
| >PRK08309 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.4e-08 Score=95.83 Aligned_cols=84 Identities=14% Similarity=0.176 Sum_probs=70.8
Q ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhhH
Q 010380 179 NVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPADV 258 (512)
Q Consensus 179 ~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~sv 258 (512)
+++||||+ |+|.+++++|+++|++|++++|++++.+.+...+. ...++.++.+|++|++++
T Consensus 2 ~vlVtGGt-G~gg~la~~L~~~G~~V~v~~R~~~~~~~l~~~l~------------------~~~~i~~~~~Dv~d~~sv 62 (177)
T PRK08309 2 HALVIGGT-GMLKRVSLWLCEKGFHVSVIARREVKLENVKREST------------------TPESITPLPLDYHDDDAL 62 (177)
T ss_pred EEEEECcC-HHHHHHHHHHHHCcCEEEEEECCHHHHHHHHHHhh------------------cCCcEEEEEccCCCHHHH
Confidence 58999998 88889999999999999999999876655443332 124688899999999999
Q ss_pred HHHHHHHHHHcCCCccccccccc
Q 010380 259 QKLSNFAVNEFGSIDIWINNAGT 281 (512)
Q Consensus 259 ~~~~~~i~~~~g~IDvLInnAG~ 281 (512)
+++++.+.++++++|++|+.+-.
T Consensus 63 ~~~i~~~l~~~g~id~lv~~vh~ 85 (177)
T PRK08309 63 KLAIKSTIEKNGPFDLAVAWIHS 85 (177)
T ss_pred HHHHHHHHHHcCCCeEEEEeccc
Confidence 99999999999999999987754
|
|
| >PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1 | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.4e-08 Score=101.28 Aligned_cols=143 Identities=23% Similarity=0.257 Sum_probs=98.8
Q ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhhH
Q 010380 179 NVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPADV 258 (512)
Q Consensus 179 ~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~sv 258 (512)
++|||||+|-||.++++.|.++|++|+.++|+ .+|++|.+++
T Consensus 2 riLI~GasG~lG~~l~~~l~~~~~~v~~~~r~--------------------------------------~~dl~d~~~~ 43 (286)
T PF04321_consen 2 RILITGASGFLGSALARALKERGYEVIATSRS--------------------------------------DLDLTDPEAV 43 (286)
T ss_dssp EEEEETTTSHHHHHHHHHHTTTSEEEEEESTT--------------------------------------CS-TTSHHHH
T ss_pred EEEEECCCCHHHHHHHHHHhhCCCEEEEeCch--------------------------------------hcCCCCHHHH
Confidence 58999999999999999999999999988764 3599999999
Q ss_pred HHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCC--C
Q 010380 259 QKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGS--G 336 (512)
Q Consensus 259 ~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a--~ 336 (512)
.+++++. ++|+|||+||.... +.-.++-+..+.+|+.++.++.+.+.. .+.++|++||... +
T Consensus 44 ~~~~~~~-----~pd~Vin~aa~~~~-----~~ce~~p~~a~~iN~~~~~~la~~~~~------~~~~li~~STd~VFdG 107 (286)
T PF04321_consen 44 AKLLEAF-----KPDVVINCAAYTNV-----DACEKNPEEAYAINVDATKNLAEACKE------RGARLIHISTDYVFDG 107 (286)
T ss_dssp HHHHHHH-------SEEEE------H-----HHHHHSHHHHHHHHTHHHHHHHHHHHH------CT-EEEEEEEGGGS-S
T ss_pred HHHHHHh-----CCCeEeccceeecH-----HhhhhChhhhHHHhhHHHHHHHHHHHH------cCCcEEEeeccEEEcC
Confidence 9988876 69999999997541 122334577899999999999888754 2568999998521 1
Q ss_pred CCC--------CCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCC
Q 010380 337 GSS--------TPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTD 382 (512)
Q Consensus 337 ~~~--------~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~ 382 (512)
..+ ..+...|+.+|...+...+... + +...+.++++-.+
T Consensus 108 ~~~~~y~E~d~~~P~~~YG~~K~~~E~~v~~~~----~---~~~IlR~~~~~g~ 154 (286)
T PF04321_consen 108 DKGGPYTEDDPPNPLNVYGRSKLEGEQAVRAAC----P---NALILRTSWVYGP 154 (286)
T ss_dssp STSSSB-TTS----SSHHHHHHHHHHHHHHHH-----S---SEEEEEE-SEESS
T ss_pred CcccccccCCCCCCCCHHHHHHHHHHHHHHHhc----C---CEEEEecceeccc
Confidence 111 1234689999999988777622 1 4566777777655
|
1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. |
| >PLN02503 fatty acyl-CoA reductase 2 | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.9e-07 Score=103.43 Aligned_cols=140 Identities=20% Similarity=0.302 Sum_probs=88.7
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC---EEEEEEcChhhH--HHHH-HHHHHH-HhhhhhhcCCCCcccccCceEEE
Q 010380 175 AGPRNVVITGSTRGLGKALAREFLLSGD---RVVVASRSSESV--RMTV-TELEEN-LKEGMMAAGGSSKKNLVHAKVAG 247 (512)
Q Consensus 175 l~gk~vLVTGassGIG~aiA~~La~~Ga---~Vvl~~R~~~~l--~~~~-~el~~~-~~~~~~~~g~~~~~~~~g~~v~~ 247 (512)
+++|+|+||||+|-||..++++|++.+. +|+++.|..+.. .+.. +++.+. .-+......+.........++.+
T Consensus 117 ~~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a~eRl~~~l~~~~lf~~l~~~~g~~~~~~~~~Ki~~ 196 (605)
T PLN02503 117 LRGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLKNEVIDAELFKCLQETHGKSYQSFMLSKLVP 196 (605)
T ss_pred hcCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhHHHHHHHHHhhhhhHHHHHHhcCccccccccccEEE
Confidence 5799999999999999999999998763 688898864321 1111 122110 00000000000001112357999
Q ss_pred EEccCCChh------hHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhC
Q 010380 248 IACDVCEPA------DVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQ 321 (512)
Q Consensus 248 v~~Dltd~~------sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~ 321 (512)
+..|+++++ ..+.+. + .+|++||+|+... + .+..+..+++|+.|+.++++.+...
T Consensus 197 v~GDl~d~~LGLs~~~~~~L~----~---~vDiVIH~AA~v~-f-------~~~~~~a~~vNV~GT~nLLelA~~~---- 257 (605)
T PLN02503 197 VVGNVCESNLGLEPDLADEIA----K---EVDVIINSAANTT-F-------DERYDVAIDINTRGPCHLMSFAKKC---- 257 (605)
T ss_pred EEeeCCCcccCCCHHHHHHHH----h---cCCEEEECccccc-c-------ccCHHHHHHHHHHHHHHHHHHHHHc----
Confidence 999999873 223222 2 5999999999754 1 1346788999999999998877543
Q ss_pred CCCCeEEeecCC
Q 010380 322 PKGGHIFNMDGA 333 (512)
Q Consensus 322 ~~~g~IV~vSS~ 333 (512)
+...++|++||.
T Consensus 258 ~~lk~fV~vSTa 269 (605)
T PLN02503 258 KKLKLFLQVSTA 269 (605)
T ss_pred CCCCeEEEccCc
Confidence 123468888875
|
|
| >KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.74 E-value=9.1e-08 Score=99.06 Aligned_cols=171 Identities=15% Similarity=0.160 Sum_probs=119.8
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC--CEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 175 AGPRNVVITGSTRGLGKALAREFLLSG--DRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 175 l~gk~vLVTGassGIG~aiA~~La~~G--a~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
.++.+++||||+|-+|..++++|.+++ .+|.+++..+.... ..++... ....++.++.+|+
T Consensus 2 ~~~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~-~~~e~~~----------------~~~~~v~~~~~D~ 64 (361)
T KOG1430|consen 2 EKKLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPTQSN-LPAELTG----------------FRSGRVTVILGDL 64 (361)
T ss_pred CcCCEEEEECCccHHHHHHHHHHHhcccccEEEEeccCccccc-cchhhhc----------------ccCCceeEEecch
Confidence 357899999999999999999999999 68999988764211 1111110 0246788999999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
.|..++.+.++ +. .+||+|....+ ..-..+-+..+++|+.|+.++...+... +..++|++||
T Consensus 65 ~~~~~i~~a~~-------~~-~Vvh~aa~~~~-----~~~~~~~~~~~~vNV~gT~nvi~~c~~~-----~v~~lIYtSs 126 (361)
T KOG1430|consen 65 LDANSISNAFQ-------GA-VVVHCAASPVP-----DFVENDRDLAMRVNVNGTLNVIEACKEL-----GVKRLIYTSS 126 (361)
T ss_pred hhhhhhhhhcc-------Cc-eEEEeccccCc-----cccccchhhheeecchhHHHHHHHHHHh-----CCCEEEEecC
Confidence 99988877665 45 66666665431 1222256789999999988887777554 4568999988
Q ss_pred CCCCC-----------CCCCCc--chhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCc
Q 010380 333 AGSGG-----------SSTPLT--AVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDL 383 (512)
Q Consensus 333 ~~a~~-----------~~~p~~--~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~ 383 (512)
..... .+.|.. ..|+.||+--+.+++..+. ..+....++.|-.|--|-
T Consensus 127 ~~Vvf~g~~~~n~~E~~p~p~~~~d~Y~~sKa~aE~~Vl~an~---~~~l~T~aLR~~~IYGpg 187 (361)
T KOG1430|consen 127 AYVVFGGEPIINGDESLPYPLKHIDPYGESKALAEKLVLEANG---SDDLYTCALRPPGIYGPG 187 (361)
T ss_pred ceEEeCCeecccCCCCCCCccccccccchHHHHHHHHHHHhcC---CCCeeEEEEccccccCCC
Confidence 63211 223322 4899999988888877664 346788888887776553
|
|
| >COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.74 E-value=7.4e-08 Score=96.49 Aligned_cols=127 Identities=23% Similarity=0.282 Sum_probs=100.0
Q ss_pred EEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhhHH
Q 010380 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPADVQ 259 (512)
Q Consensus 180 vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~sv~ 259 (512)
+||||++|-+|.++++.|. .++.|+.++|.. +|++|++.+.
T Consensus 3 iLi~G~~GqLG~~L~~~l~-~~~~v~a~~~~~--------------------------------------~Ditd~~~v~ 43 (281)
T COG1091 3 ILITGANGQLGTELRRALP-GEFEVIATDRAE--------------------------------------LDITDPDAVL 43 (281)
T ss_pred EEEEcCCChHHHHHHHHhC-CCceEEeccCcc--------------------------------------ccccChHHHH
Confidence 8999999999999999998 668999887641 6999999999
Q ss_pred HHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCC--CCC
Q 010380 260 KLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAG--SGG 337 (512)
Q Consensus 260 ~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~--a~~ 337 (512)
+++++. ++|++||+|+.... +....+-+..+.+|..|+.++.+++... +..+|++|+-- .+.
T Consensus 44 ~~i~~~-----~PDvVIn~AAyt~v-----D~aE~~~e~A~~vNa~~~~~lA~aa~~~------ga~lVhiSTDyVFDG~ 107 (281)
T COG1091 44 EVIRET-----RPDVVINAAAYTAV-----DKAESEPELAFAVNATGAENLARAAAEV------GARLVHISTDYVFDGE 107 (281)
T ss_pred HHHHhh-----CCCEEEECcccccc-----ccccCCHHHHHHhHHHHHHHHHHHHHHh------CCeEEEeecceEecCC
Confidence 999886 79999999998652 2233446789999999999999998553 56899998631 111
Q ss_pred CC--------CCCcchhhHHHHHHHHHHHHHH
Q 010380 338 SS--------TPLTAVYGSTKCGLRQLQASLF 361 (512)
Q Consensus 338 ~~--------~p~~~~Y~aSKaAl~~l~~sLa 361 (512)
.+ ..+...||.||.+-+..++...
T Consensus 108 ~~~~Y~E~D~~~P~nvYG~sKl~GE~~v~~~~ 139 (281)
T COG1091 108 KGGPYKETDTPNPLNVYGRSKLAGEEAVRAAG 139 (281)
T ss_pred CCCCCCCCCCCCChhhhhHHHHHHHHHHHHhC
Confidence 11 2345689999999998887653
|
|
| >TIGR01777 yfcH conserved hypothetical protein TIGR01777 | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.3e-07 Score=94.80 Aligned_cols=157 Identities=17% Similarity=0.151 Sum_probs=93.0
Q ss_pred EEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhhHH
Q 010380 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPADVQ 259 (512)
Q Consensus 180 vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~sv~ 259 (512)
||||||+|.||.+++++|+++|++|++++|+.+...... . .. ..|+.. ..
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~----~-------------------~~----~~~~~~-~~-- 50 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDGHEVTILTRSPPAGANTK----W-------------------EG----YKPWAP-LA-- 50 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcCCEEEEEeCCCCCCCccc----c-------------------ee----eecccc-cc--
Confidence 589999999999999999999999999999876532110 0 00 112221 11
Q ss_pred HHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCC-CCeEEeecCCCC-CC
Q 010380 260 KLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPK-GGHIFNMDGAGS-GG 337 (512)
Q Consensus 260 ~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~-~g~IV~vSS~~a-~~ 337 (512)
..+.+..+|+|||+||.... ....+.+..+..+++|+.++.++.+++.. .+. ..++|+.|+... +.
T Consensus 51 -----~~~~~~~~D~Vvh~a~~~~~---~~~~~~~~~~~~~~~n~~~~~~l~~a~~~----~~~~~~~~i~~S~~~~yg~ 118 (292)
T TIGR01777 51 -----ESEALEGADAVINLAGEPIA---DKRWTEERKQEIRDSRIDTTRALVEAIAA----AEQKPKVFISASAVGYYGT 118 (292)
T ss_pred -----hhhhcCCCCEEEECCCCCcc---cccCCHHHHHHHHhcccHHHHHHHHHHHh----cCCCceEEEEeeeEEEeCC
Confidence 12234579999999997431 12234456677889999998888777643 211 123444444210 10
Q ss_pred ---CCC-----C-CcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCC
Q 010380 338 ---SST-----P-LTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTD 382 (512)
Q Consensus 338 ---~~~-----p-~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~ 382 (512)
.+. + ....|+..+...+.... .+...++.+..+.|+.+-.+
T Consensus 119 ~~~~~~~E~~~~~~~~~~~~~~~~~e~~~~----~~~~~~~~~~ilR~~~v~G~ 168 (292)
T TIGR01777 119 SEDRVFTEEDSPAGDDFLAELCRDWEEAAQ----AAEDLGTRVVLLRTGIVLGP 168 (292)
T ss_pred CCCCCcCcccCCCCCChHHHHHHHHHHHhh----hchhcCCceEEEeeeeEECC
Confidence 010 1 11123333333333222 23345799999999999765
|
This model represents a clade of proteins of unknown function including the E. coli yfcH protein. |
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.2e-07 Score=103.70 Aligned_cols=142 Identities=14% Similarity=0.097 Sum_probs=97.5
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChh
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPA 256 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~ 256 (512)
.++||||||+|-||.++++.|.++|++|... ..|++|.+
T Consensus 380 ~mkiLVtGa~G~iG~~l~~~L~~~g~~v~~~-----------------------------------------~~~l~d~~ 418 (668)
T PLN02260 380 SLKFLIYGRTGWIGGLLGKLCEKQGIAYEYG-----------------------------------------KGRLEDRS 418 (668)
T ss_pred CceEEEECCCchHHHHHHHHHHhCCCeEEee-----------------------------------------ccccccHH
Confidence 3579999999999999999999999887311 13577777
Q ss_pred hHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCC-
Q 010380 257 DVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGS- 335 (512)
Q Consensus 257 sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a- 335 (512)
.+.+.++.. ++|+|||+|+.... +-.+...++-+..+++|+.++.++++++... +.++|++||...
T Consensus 419 ~v~~~i~~~-----~pd~Vih~Aa~~~~--~~~~~~~~~~~~~~~~N~~gt~~l~~a~~~~------g~~~v~~Ss~~v~ 485 (668)
T PLN02260 419 SLLADIRNV-----KPTHVFNAAGVTGR--PNVDWCESHKVETIRANVVGTLTLADVCREN------GLLMMNFATGCIF 485 (668)
T ss_pred HHHHHHHhh-----CCCEEEECCcccCC--CCCChHHhCHHHHHHHHhHHHHHHHHHHHHc------CCeEEEEccccee
Confidence 777766543 68999999997531 1112233455788999999999999988653 224556654311
Q ss_pred CC---------CC-------CCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEe
Q 010380 336 GG---------SS-------TPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTAS 375 (512)
Q Consensus 336 ~~---------~~-------~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~ 375 (512)
+. .+ .+....|+.||.+.+.+++.... -..+++..+.
T Consensus 486 ~~~~~~~~~~~~p~~E~~~~~~~~~~Yg~sK~~~E~~~~~~~~---~~~~r~~~~~ 538 (668)
T PLN02260 486 EYDAKHPEGSGIGFKEEDKPNFTGSFYSKTKAMVEELLREYDN---VCTLRVRMPI 538 (668)
T ss_pred cCCcccccccCCCCCcCCCCCCCCChhhHHHHHHHHHHHhhhh---heEEEEEEec
Confidence 10 01 12236899999999999887642 2356666655
|
|
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=98.63 E-value=6.2e-07 Score=109.13 Aligned_cols=179 Identities=17% Similarity=0.176 Sum_probs=115.5
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCC----CEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSG----DRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~G----a~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
.++|+||||+|.||..++++|+++| ++|+...|+..... ..+.+.+..... +. .......++.++.+|+
T Consensus 971 ~~~VlvTGatGflG~~l~~~Ll~~~~~~~~~V~~l~R~~~~~~-~~~~l~~~~~~~----~~--~~~~~~~~i~~~~gDl 1043 (1389)
T TIGR03443 971 PITVFLTGATGFLGSFILRDLLTRRSNSNFKVFAHVRAKSEEA-GLERLRKTGTTY----GI--WDEEWASRIEVVLGDL 1043 (1389)
T ss_pred CceEEEeCCccccHHHHHHHHHhcCCCCCcEEEEEECcCChHH-HHHHHHHHHHHh----CC--CchhhhcceEEEeccC
Confidence 5789999999999999999999987 78999999754432 223332211110 00 0000123688999999
Q ss_pred CChhhH--HHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEee
Q 010380 253 CEPADV--QKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNM 330 (512)
Q Consensus 253 td~~sv--~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~v 330 (512)
+++.-- ....+++. ..+|++||||+... . ..+ +.....+|+.|..++++.+.. . +..+++++
T Consensus 1044 ~~~~lgl~~~~~~~l~---~~~d~iiH~Aa~~~-~----~~~---~~~~~~~nv~gt~~ll~~a~~----~-~~~~~v~v 1107 (1389)
T TIGR03443 1044 SKEKFGLSDEKWSDLT---NEVDVIIHNGALVH-W----VYP---YSKLRDANVIGTINVLNLCAE----G-KAKQFSFV 1107 (1389)
T ss_pred CCccCCcCHHHHHHHH---hcCCEEEECCcEec-C----ccC---HHHHHHhHHHHHHHHHHHHHh----C-CCceEEEE
Confidence 865210 11122222 36999999999754 1 112 344556799999999887643 2 33579999
Q ss_pred cCCCCCCC----------------CC-----------CCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCC
Q 010380 331 DGAGSGGS----------------ST-----------PLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTD 382 (512)
Q Consensus 331 SS~~a~~~----------------~~-----------p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~ 382 (512)
||...... +. .....|+.||.+.+.+.+..+. .|+.+.++.||.|-.+
T Consensus 1108 SS~~v~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~aE~l~~~~~~----~g~~~~i~Rpg~v~G~ 1182 (1389)
T TIGR03443 1108 SSTSALDTEYYVNLSDELVQAGGAGIPESDDLMGSSKGLGTGYGQSKWVAEYIIREAGK----RGLRGCIVRPGYVTGD 1182 (1389)
T ss_pred eCeeecCcccccchhhhhhhccCCCCCcccccccccccCCCChHHHHHHHHHHHHHHHh----CCCCEEEECCCccccC
Confidence 88522100 00 0124599999999998876543 3899999999999654
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.63 E-value=8e-08 Score=94.86 Aligned_cols=175 Identities=16% Similarity=0.106 Sum_probs=127.4
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChh
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPA 256 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~ 256 (512)
+|++||||-+|--|..+|+.|+++|+.|.-+.|+........-.|.+ .+...+.+++.+.+|++|..
T Consensus 2 ~K~ALITGITGQDGsYLa~lLLekGY~VhGi~Rrss~~n~~ri~L~~-------------~~~~~~~~l~l~~gDLtD~~ 68 (345)
T COG1089 2 GKVALITGITGQDGSYLAELLLEKGYEVHGIKRRSSSFNTPRIHLYE-------------DPHLNDPRLHLHYGDLTDSS 68 (345)
T ss_pred CceEEEecccCCchHHHHHHHHhcCcEEEEEeeccccCCcccceecc-------------ccccCCceeEEEeccccchH
Confidence 68999999999999999999999999999988874332111001111 11124567999999999999
Q ss_pred hHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCC--
Q 010380 257 DVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAG-- 334 (512)
Q Consensus 257 sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~-- 334 (512)
.+.++++.+ .+|-+.|-|+... ...+.++-+.+.+++.+|+++++.++.-+-. +..++..-||+.
T Consensus 69 ~l~r~l~~v-----~PdEIYNLaAQS~-----V~vSFe~P~~T~~~~~iGtlrlLEaiR~~~~---~~~rfYQAStSE~f 135 (345)
T COG1089 69 NLLRILEEV-----QPDEIYNLAAQSH-----VGVSFEQPEYTADVDAIGTLRLLEAIRILGE---KKTRFYQASTSELY 135 (345)
T ss_pred HHHHHHHhc-----Cchhheecccccc-----ccccccCcceeeeechhHHHHHHHHHHHhCC---cccEEEecccHHhh
Confidence 999999887 7899999988654 3455566678899999999999888654421 245666666541
Q ss_pred --------CCCCCCCCcchhhHHHHHHHHHHHHHHHHhC---CCCeEEEEEeCC
Q 010380 335 --------SGGSSTPLTAVYGSTKCGLRQLQASLFKESK---RSKVGVHTASPG 377 (512)
Q Consensus 335 --------a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~---~~GIrVn~V~PG 377 (512)
.-..|..+.++|+++|..-..++...+..+. -.||-.|.=+|.
T Consensus 136 G~v~~~pq~E~TPFyPrSPYAvAKlYa~W~tvNYResYgl~AcnGILFNHESP~ 189 (345)
T COG1089 136 GLVQEIPQKETTPFYPRSPYAVAKLYAYWITVNYRESYGLFACNGILFNHESPL 189 (345)
T ss_pred cCcccCccccCCCCCCCCHHHHHHHHHHheeeehHhhcCceeecceeecCCCCC
Confidence 1113345668999999999999988887764 356777766654
|
|
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.3e-07 Score=93.38 Aligned_cols=140 Identities=14% Similarity=0.060 Sum_probs=92.1
Q ss_pred EEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhhHH
Q 010380 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPADVQ 259 (512)
Q Consensus 180 vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~sv~ 259 (512)
++||||||.+|..++++|+++|++|.++.|++++.. ...+..+.+|+.|++++.
T Consensus 2 ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~--------------------------~~~~~~~~~d~~d~~~l~ 55 (285)
T TIGR03649 2 ILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSA--------------------------GPNEKHVKFDWLDEDTWD 55 (285)
T ss_pred EEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCcccc--------------------------CCCCccccccCCCHHHHH
Confidence 799999999999999999999999999999976431 013445678999999999
Q ss_pred HHHHHHHHHcCC-CcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCC
Q 010380 260 KLSNFAVNEFGS-IDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGS 338 (512)
Q Consensus 260 ~~~~~i~~~~g~-IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~~~ 338 (512)
.+++.. +.+.. +|.++++++... +..+ ..+.++..+++. +-.+||++||.+.. .
T Consensus 56 ~a~~~~-~~~~g~~d~v~~~~~~~~----------~~~~------------~~~~~i~aa~~~-gv~~~V~~Ss~~~~-~ 110 (285)
T TIGR03649 56 NPFSSD-DGMEPEISAVYLVAPPIP----------DLAP------------PMIKFIDFARSK-GVRRFVLLSASIIE-K 110 (285)
T ss_pred HHHhcc-cCcCCceeEEEEeCCCCC----------ChhH------------HHHHHHHHHHHc-CCCEEEEeeccccC-C
Confidence 887643 22334 899998876421 0111 112344455554 45689999876321 1
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCc
Q 010380 339 STPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDL 383 (512)
Q Consensus 339 ~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~ 383 (512)
+. ..+...+.+.+. ..|+....+.|+++..++
T Consensus 111 ~~-------~~~~~~~~~l~~------~~gi~~tilRp~~f~~~~ 142 (285)
T TIGR03649 111 GG-------PAMGQVHAHLDS------LGGVEYTVLRPTWFMENF 142 (285)
T ss_pred CC-------chHHHHHHHHHh------ccCCCEEEEeccHHhhhh
Confidence 11 122222222221 138999999999876554
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.8e-07 Score=98.97 Aligned_cols=82 Identities=24% Similarity=0.318 Sum_probs=63.5
Q ss_pred CCCCCEEEEECC---------------CCh-HHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCc
Q 010380 174 KAGPRNVVITGS---------------TRG-LGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237 (512)
Q Consensus 174 ~l~gk~vLVTGa---------------ssG-IG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~ 237 (512)
+++||+++|||| |+| +|+++|++|+++|++|++++++.+ ++ .
T Consensus 185 ~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~~~~~-~~-------~-------------- 242 (399)
T PRK05579 185 DLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVSGPVN-LP-------T-------------- 242 (399)
T ss_pred ccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeCCCcc-cc-------C--------------
Confidence 578999999999 455 999999999999999999998752 10 0
Q ss_pred ccccCceEEEEEccCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCC
Q 010380 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKP 287 (512)
Q Consensus 238 ~~~~g~~v~~v~~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~ 287 (512)
. .. ...+|+++.+++.+.+. +.++++|++|||||+.. +.+
T Consensus 243 ---~-~~--~~~~dv~~~~~~~~~v~---~~~~~~DilI~~Aav~d-~~~ 282 (399)
T PRK05579 243 ---P-AG--VKRIDVESAQEMLDAVL---AALPQADIFIMAAAVAD-YRP 282 (399)
T ss_pred ---C-CC--cEEEccCCHHHHHHHHH---HhcCCCCEEEEcccccc-ccc
Confidence 0 11 24679998888766655 56789999999999976 444
|
|
| >PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.7e-07 Score=99.21 Aligned_cols=123 Identities=15% Similarity=0.104 Sum_probs=86.7
Q ss_pred EECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhhHHHH
Q 010380 182 ITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPADVQKL 261 (512)
Q Consensus 182 VTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~sv~~~ 261 (512)
|+||++|+|.++++.|...|+.|+.+.+...+... ....++..+.+|.+..+..+.+
T Consensus 43 l~~~~~g~~~~~~~~~~~~g~~v~~~~~~~~~~~~-----------------------~~~~~~~~~~~d~~~~~~~~~l 99 (450)
T PRK08261 43 LVGGAGRLAEALAALLAGLGYDVVANNDGGLTWAA-----------------------GWGDRFGALVFDATGITDPADL 99 (450)
T ss_pred EEccCchhHHHHHHHHhhCCCeeeecCcccccccc-----------------------CcCCcccEEEEECCCCCCHHHH
Confidence 88999999999999999999999988665441100 0112333344455544333221
Q ss_pred HHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCCC
Q 010380 262 SNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTP 341 (512)
Q Consensus 262 ~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~~~~~p 341 (512)
.+.+.+.+..++.|. .+|+||+++|.. .. .
T Consensus 100 -------------------------------------------~~~~~~~~~~l~~l~---~~griv~i~s~~-~~---~ 129 (450)
T PRK08261 100 -------------------------------------------KALYEFFHPVLRSLA---PCGRVVVLGRPP-EA---A 129 (450)
T ss_pred -------------------------------------------HHHHHHHHHHHHhcc---CCCEEEEEcccc-cc---C
Confidence 122345666677775 357999998863 32 2
Q ss_pred CcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCc
Q 010380 342 LTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGM 378 (512)
Q Consensus 342 ~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~ 378 (512)
....|+++|+++.+|++++++|+ +.||++++|.|++
T Consensus 130 ~~~~~~~akaal~gl~rsla~E~-~~gi~v~~i~~~~ 165 (450)
T PRK08261 130 ADPAAAAAQRALEGFTRSLGKEL-RRGATAQLVYVAP 165 (450)
T ss_pred CchHHHHHHHHHHHHHHHHHHHh-hcCCEEEEEecCC
Confidence 34579999999999999999999 7799999999986
|
|
| >COG4982 3-oxoacyl-[acyl-carrier protein] | Back alignment and domain information |
|---|
Probab=98.45 E-value=8.3e-06 Score=87.81 Aligned_cols=198 Identities=16% Similarity=0.135 Sum_probs=127.7
Q ss_pred ccCCCCCCEEEEECCC-ChHHHHHHHHHHHCCCEEEEEEcC-hhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEE
Q 010380 171 EHCKAGPRNVVITGST-RGLGKALAREFLLSGDRVVVASRS-SESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGI 248 (512)
Q Consensus 171 ~~~~l~gk~vLVTGas-sGIG~aiA~~La~~Ga~Vvl~~R~-~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v 248 (512)
+.....++++|||||+ +-||.+++..|+..|++||++..+ .+...+..+.|...+.. .+....++
T Consensus 390 ~~~~y~d~valVTGA~~gSIaa~Vv~~LL~gGAtVI~TTS~~s~~r~efyr~LYa~~a~-------------~ga~LwvV 456 (866)
T COG4982 390 NGGTYGDKVALVTGASKGSIAAAVVARLLAGGATVIATTSRLSEERTEFYRSLYARHAR-------------YGAALWVV 456 (866)
T ss_pred CCCCcccceEEEecCCCcchHHHHHHHHHhCCcEEEEEcccccHHHHHHHHHHHHhhCC-------------CCceEEEE
Confidence 3567889999999998 569999999999999999998554 34444445555443322 57788999
Q ss_pred EccCCChhhHHHHHHHHHHHcC--------------CCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHH
Q 010380 249 ACDVCEPADVQKLSNFAVNEFG--------------SIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREA 314 (512)
Q Consensus 249 ~~Dltd~~sv~~~~~~i~~~~g--------------~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~ 314 (512)
..++.+..+|+.+++.|-++.. .+|.+|--|.... .+.+.+.... -+-.+.+-+.....++-.+
T Consensus 457 paN~~SysDVdAlIewIg~eq~~t~g~~s~~~k~a~~ptll~PFAAp~v-~G~l~~agsr-aE~~~rilLw~V~Rliggl 534 (866)
T COG4982 457 PANMGSYSDVDALIEWIGDEQTETVGPQSIHIKLAWTPTLLFPFAAPRV-SGELADAGSR-AEFAMRILLWNVLRLIGGL 534 (866)
T ss_pred eccccchhhHHHHHHHhccccccccCCcceecccccCcceeeecccCCc-cCccccCCch-HHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999875432 2566776666544 3445444432 2333444444444444443
Q ss_pred HHHHHhCC--CCCeEEeecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhC-CCCeEEEEEeCCccc-CCccc
Q 010380 315 MRVMRDQP--KGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESK-RSKVGVHTASPGMVL-TDLLL 385 (512)
Q Consensus 315 lp~m~~~~--~~g~IV~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~-~~GIrVn~V~PG~V~-T~~~~ 385 (512)
.+.-..++ ..-++|.=.|...+ -..+-.+|+-||++++.+..-+..|-. ..-+.+..-.-||++ |.++.
T Consensus 535 ~~~~s~r~v~~R~hVVLPgSPNrG--~FGgDGaYgEsK~aldav~~RW~sEs~Wa~~vsl~~A~IGWtrGTGLMg 607 (866)
T COG4982 535 KKQGSSRGVDTRLHVVLPGSPNRG--MFGGDGAYGESKLALDAVVNRWHSESSWAARVSLAHALIGWTRGTGLMG 607 (866)
T ss_pred hhhccccCcccceEEEecCCCCCC--ccCCCcchhhHHHHHHHHHHHhhccchhhHHHHHhhhheeeeccccccC
Confidence 33322221 12355555554222 234568999999999998887777642 112555555678988 66553
|
|
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=7.7e-07 Score=90.48 Aligned_cols=84 Identities=14% Similarity=0.231 Sum_probs=64.3
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEEcCh---hhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEE
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDR-VVVASRSS---ESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIA 249 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~-Vvl~~R~~---~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~ 249 (512)
++++|+++|||| ||+|++++..|++.|++ |++++|+. ++++++.+++.+ ....+....
T Consensus 123 ~~~~k~vlI~GA-GGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~-----------------~~~~~~~~~ 184 (289)
T PRK12548 123 DVKGKKLTVIGA-GGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQ-----------------EVPECIVNV 184 (289)
T ss_pred CcCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhh-----------------cCCCceeEE
Confidence 467899999999 69999999999999985 99999997 666666666543 223455567
Q ss_pred ccCCChhhHHHHHHHHHHHcCCCcccccccccC
Q 010380 250 CDVCEPADVQKLSNFAVNEFGSIDIWINNAGTN 282 (512)
Q Consensus 250 ~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~ 282 (512)
+|+++.+++...++ ..|+||||--+.
T Consensus 185 ~d~~~~~~~~~~~~-------~~DilINaTp~G 210 (289)
T PRK12548 185 YDLNDTEKLKAEIA-------SSDILVNATLVG 210 (289)
T ss_pred echhhhhHHHhhhc-------cCCEEEEeCCCC
Confidence 88888777655433 469999988664
|
|
| >PLN00016 RNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.9e-06 Score=89.27 Aligned_cols=155 Identities=17% Similarity=0.173 Sum_probs=93.5
Q ss_pred CCCCEEEEE----CCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEc
Q 010380 175 AGPRNVVIT----GSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIAC 250 (512)
Q Consensus 175 l~gk~vLVT----GassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~ 250 (512)
...++|+|| ||+|.||..++++|+++|++|++++|+..........-...+.+ .....+.++.+
T Consensus 50 ~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~------------l~~~~v~~v~~ 117 (378)
T PLN00016 50 VEKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEPSQKMKKEPFSRFSE------------LSSAGVKTVWG 117 (378)
T ss_pred cccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcchhhhccCchhhhhH------------hhhcCceEEEe
Confidence 345789999 99999999999999999999999999875432211000000000 01123677888
Q ss_pred cCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEee
Q 010380 251 DVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNM 330 (512)
Q Consensus 251 Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~v 330 (512)
|+.| +.+++. ...+|+|||++|.. .+ + ++.++..+++. +-.++|++
T Consensus 118 D~~d---~~~~~~-----~~~~d~Vi~~~~~~----------~~-----------~----~~~ll~aa~~~-gvkr~V~~ 163 (378)
T PLN00016 118 DPAD---VKSKVA-----GAGFDVVYDNNGKD----------LD-----------E----VEPVADWAKSP-GLKQFLFC 163 (378)
T ss_pred cHHH---HHhhhc-----cCCccEEEeCCCCC----------HH-----------H----HHHHHHHHHHc-CCCEEEEE
Confidence 8876 333321 13689999987631 11 1 22334444443 44589999
Q ss_pred cCCCCCCCC--CCC-----cchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCc
Q 010380 331 DGAGSGGSS--TPL-----TAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDL 383 (512)
Q Consensus 331 SS~~a~~~~--~p~-----~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~ 383 (512)
||.+..... .|. ...+. +|...+.+.+ ..++.+..+.|+.+-.+.
T Consensus 164 SS~~vyg~~~~~p~~E~~~~~p~~-sK~~~E~~l~-------~~~l~~~ilRp~~vyG~~ 215 (378)
T PLN00016 164 SSAGVYKKSDEPPHVEGDAVKPKA-GHLEVEAYLQ-------KLGVNWTSFRPQYIYGPG 215 (378)
T ss_pred ccHhhcCCCCCCCCCCCCcCCCcc-hHHHHHHHHH-------HcCCCeEEEeceeEECCC
Confidence 986321110 110 01122 7887776543 247899999999887664
|
|
| >PRK06732 phosphopantothenate--cysteine ligase; Validated | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.4e-06 Score=85.54 Aligned_cols=99 Identities=21% Similarity=0.282 Sum_probs=70.0
Q ss_pred EEEEECCCCh-HHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhh
Q 010380 179 NVVITGSTRG-LGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPAD 257 (512)
Q Consensus 179 ~vLVTGassG-IG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~s 257 (512)
+-.||..|+| ||.++|++|+++|++|++++|+.... .. ....+.++.++ +
T Consensus 17 VR~itN~SSG~iG~aLA~~L~~~G~~V~li~r~~~~~--------~~----------------~~~~v~~i~v~-----s 67 (229)
T PRK06732 17 VRGITNHSTGQLGKIIAETFLAAGHEVTLVTTKTAVK--------PE----------------PHPNLSIIEIE-----N 67 (229)
T ss_pred ceeecCccchHHHHHHHHHHHhCCCEEEEEECccccc--------CC----------------CCCCeEEEEEe-----c
Confidence 5588877766 99999999999999999998764210 00 01234444432 3
Q ss_pred HHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhH
Q 010380 258 VQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGS 307 (512)
Q Consensus 258 v~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~ 307 (512)
...+.+.+.+.++.+|+||||||+.. +.+....+.+++.+++++|.+..
T Consensus 68 ~~~m~~~l~~~~~~~DivIh~AAvsd-~~~~~~~~~~~~~~~~~v~~~~~ 116 (229)
T PRK06732 68 VDDLLETLEPLVKDHDVLIHSMAVSD-YTPVYMTDLEEVSASDNLNEFLT 116 (229)
T ss_pred HHHHHHHHHHHhcCCCEEEeCCccCC-ceehhhhhhhhhhhhhhhhhhhc
Confidence 33334444445567999999999976 67777788999999999987654
|
|
| >PRK12320 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.7e-06 Score=94.46 Aligned_cols=134 Identities=17% Similarity=0.304 Sum_probs=90.6
Q ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhhH
Q 010380 179 NVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPADV 258 (512)
Q Consensus 179 ~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~sv 258 (512)
+|+||||+|.||.+++++|+++|++|++++|+.... ....+.++.+|++|.. +
T Consensus 2 kILVTGAaGFIGs~La~~Ll~~G~~Vi~ldr~~~~~--------------------------~~~~ve~v~~Dl~d~~-l 54 (699)
T PRK12320 2 QILVTDATGAVGRSVTRQLIAAGHTVSGIAQHPHDA--------------------------LDPRVDYVCASLRNPV-L 54 (699)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCEEEEEeCChhhc--------------------------ccCCceEEEccCCCHH-H
Confidence 589999999999999999999999999999864321 1135778999999873 3
Q ss_pred HHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCC
Q 010380 259 QKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGS 338 (512)
Q Consensus 259 ~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~~~ 338 (512)
.+++ ..+|++||+|+... . . ..++|+.+..++.+++.. . +.+||++||. .+
T Consensus 55 ~~al-------~~~D~VIHLAa~~~-~------~------~~~vNv~Gt~nLleAA~~----~--GvRiV~~SS~-~G-- 105 (699)
T PRK12320 55 QELA-------GEADAVIHLAPVDT-S------A------PGGVGITGLAHVANAAAR----A--GARLLFVSQA-AG-- 105 (699)
T ss_pred HHHh-------cCCCEEEEcCccCc-c------c------hhhHHHHHHHHHHHHHHH----c--CCeEEEEECC-CC--
Confidence 3322 25899999998632 1 0 114789998888877642 2 2479998875 22
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCC
Q 010380 339 STPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTD 382 (512)
Q Consensus 339 ~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~ 382 (512)
.+ ..|.. .+.+..+ .++.+..+.|+.+--+
T Consensus 106 -~~--~~~~~--------aE~ll~~---~~~p~~ILR~~nVYGp 135 (699)
T PRK12320 106 -RP--ELYRQ--------AETLVST---GWAPSLVIRIAPPVGR 135 (699)
T ss_pred -CC--ccccH--------HHHHHHh---cCCCEEEEeCceecCC
Confidence 11 12331 2222222 2477788888887665
|
|
| >TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.6e-06 Score=91.51 Aligned_cols=109 Identities=24% Similarity=0.282 Sum_probs=74.6
Q ss_pred CCCCCEEEEECC---------------CCh-HHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCc
Q 010380 174 KAGPRNVVITGS---------------TRG-LGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237 (512)
Q Consensus 174 ~l~gk~vLVTGa---------------ssG-IG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~ 237 (512)
+++||+++|||| |+| +|.++|++|+.+|++|++++++....
T Consensus 182 ~~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~V~~~~g~~~~~----------------------- 238 (390)
T TIGR00521 182 DLEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGADVTLITGPVSLL----------------------- 238 (390)
T ss_pred ccCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCEEEEeCCCCccC-----------------------
Confidence 478999999999 667 99999999999999999988764320
Q ss_pred ccccCceEEEEEccCCChhhH-HHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHH---HHHHhhhhhHHHHHHH
Q 010380 238 KNLVHAKVAGIACDVCEPADV-QKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE---QIVSTNLVGSILCTRE 313 (512)
Q Consensus 238 ~~~~g~~v~~v~~Dltd~~sv-~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~---~~~~vNv~g~~~l~k~ 313 (512)
....+ ..+|+++.+++ +.++++ .++.+|++|+|||+.. +.+....+ +.+. ..+.+|+...--+++.
T Consensus 239 ---~~~~~--~~~~v~~~~~~~~~~~~~---~~~~~D~~i~~Aavsd-~~~~~~~~-~Ki~~~~~~~~l~L~~~pdil~~ 308 (390)
T TIGR00521 239 ---TPPGV--KSIKVSTAEEMLEAALNE---LAKDFDIFISAAAVAD-FKPKTVFE-GKIKKQGEELSLKLVKNPDIIAE 308 (390)
T ss_pred ---CCCCc--EEEEeccHHHHHHHHHHh---hcccCCEEEEcccccc-cccccccc-ccccccCCceeEEEEeCcHHHHH
Confidence 01112 46799998888 555544 3478999999999976 55443221 1122 2345666665555554
Q ss_pred HH
Q 010380 314 AM 315 (512)
Q Consensus 314 ~l 315 (512)
+.
T Consensus 309 l~ 310 (390)
T TIGR00521 309 VR 310 (390)
T ss_pred HH
Confidence 43
|
This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity. |
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=98.26 E-value=6e-06 Score=78.77 Aligned_cols=84 Identities=18% Similarity=0.189 Sum_probs=66.0
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
.++++++++|+||+|++|+.+++.|+++|++|++++|+.+++++..+++.+. . ......+|.
T Consensus 24 ~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~----------------~--~~~~~~~~~ 85 (194)
T cd01078 24 KDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRAR----------------F--GEGVGAVET 85 (194)
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhh----------------c--CCcEEEeeC
Confidence 3678999999999999999999999999999999999998888777666432 1 223456788
Q ss_pred CChhhHHHHHHHHHHHcCCCccccccccc
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGT 281 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~ 281 (512)
.+.+++.+.++ ..|++|++...
T Consensus 86 ~~~~~~~~~~~-------~~diVi~at~~ 107 (194)
T cd01078 86 SDDAARAAAIK-------GADVVFAAGAA 107 (194)
T ss_pred CCHHHHHHHHh-------cCCEEEECCCC
Confidence 88887766553 57888886654
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.23 E-value=4.7e-06 Score=82.51 Aligned_cols=159 Identities=21% Similarity=0.225 Sum_probs=90.8
Q ss_pred EEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhhHH
Q 010380 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPADVQ 259 (512)
Q Consensus 180 vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~sv~ 259 (512)
|+||||||-||.+++.+|.+.|++|+++.|++.+.+... +..+ ...+.+.
T Consensus 1 IliTGgTGlIG~~L~~~L~~~gh~v~iltR~~~~~~~~~-----------------------~~~v-------~~~~~~~ 50 (297)
T COG1090 1 ILITGGTGLIGRALTARLRKGGHQVTILTRRPPKASQNL-----------------------HPNV-------TLWEGLA 50 (297)
T ss_pred CeEeccccchhHHHHHHHHhCCCeEEEEEcCCcchhhhc-----------------------Cccc-------cccchhh
Confidence 589999999999999999999999999999987643210 0111 1111222
Q ss_pred HHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCC
Q 010380 260 KLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSS 339 (512)
Q Consensus 260 ~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~~~~ 339 (512)
...+ .++|+|||-||.... .. ..+.+.=+.+++ +-+..++.+.....+...+..+..-.|+ .++.+
T Consensus 51 ~~~~------~~~DavINLAG~~I~-~r--rWt~~~K~~i~~----SRi~~T~~L~e~I~~~~~~P~~~isaSA-vGyYG 116 (297)
T COG1090 51 DALT------LGIDAVINLAGEPIA-ER--RWTEKQKEEIRQ----SRINTTEKLVELIAASETKPKVLISASA-VGYYG 116 (297)
T ss_pred hccc------CCCCEEEECCCCccc-cc--cCCHHHHHHHHH----HHhHHHHHHHHHHHhccCCCcEEEecce-EEEec
Confidence 1111 179999999997552 11 134444444444 4455566666666544333433333333 44444
Q ss_pred CCCcchhhHHHH----HHHHHHHHHHHH---hCCCCeEEEEEeCCcccCC
Q 010380 340 TPLTAVYGSTKC----GLRQLQASLFKE---SKRSKVGVHTASPGMVLTD 382 (512)
Q Consensus 340 ~p~~~~Y~aSKa----Al~~l~~sLa~E---l~~~GIrVn~V~PG~V~T~ 382 (512)
......|--... .+..+++.+-.| ....|+||..+.-|.|-.+
T Consensus 117 ~~~~~~~tE~~~~g~~Fla~lc~~WE~~a~~a~~~gtRvvllRtGvVLs~ 166 (297)
T COG1090 117 HSGDRVVTEESPPGDDFLAQLCQDWEEEALQAQQLGTRVVLLRTGVVLSP 166 (297)
T ss_pred CCCceeeecCCCCCCChHHHHHHHHHHHHhhhhhcCceEEEEEEEEEecC
Confidence 333322222221 233333333222 2345899999999999774
|
|
| >KOG0747 consensus Putative NAD+-dependent epimerases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.20 E-value=9.2e-06 Score=80.49 Aligned_cols=172 Identities=14% Similarity=0.060 Sum_probs=118.5
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCC--CEEEEEEcCh--hhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEcc
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSG--DRVVVASRSS--ESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACD 251 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~G--a~Vvl~~R~~--~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~D 251 (512)
..+.++||||.+-||...+..++..= ++.+.++.-. ..+ ...++.. ..++..++..|
T Consensus 5 ~~~~vlItgg~gfi~Sn~~~~~~~~~p~~~~v~idkL~~~s~~-~~l~~~~------------------n~p~ykfv~~d 65 (331)
T KOG0747|consen 5 KEKNVLITGGAGFIGSNFINYLVDKYPDYKFVNLDKLDYCSNL-KNLEPVR------------------NSPNYKFVEGD 65 (331)
T ss_pred ccceEEEecCcCcchhhhhhhcccCCCCCcEEEEeeccccccc-chhhhhc------------------cCCCceEeecc
Confidence 34889999999999999999998763 4555443210 001 1111111 34678899999
Q ss_pred CCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeec
Q 010380 252 VCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD 331 (512)
Q Consensus 252 ltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vS 331 (512)
+.+...+..++.. .++|.|||-|...... .+.-+--.....|+++...|++...-.. +-.++|.+|
T Consensus 66 i~~~~~~~~~~~~-----~~id~vihfaa~t~vd-----~s~~~~~~~~~nnil~t~~Lle~~~~sg----~i~~fvhvS 131 (331)
T KOG0747|consen 66 IADADLVLYLFET-----EEIDTVIHFAAQTHVD-----RSFGDSFEFTKNNILSTHVLLEAVRVSG----NIRRFVHVS 131 (331)
T ss_pred ccchHHHHhhhcc-----CchhhhhhhHhhhhhh-----hhcCchHHHhcCCchhhhhHHHHHHhcc----CeeEEEEec
Confidence 9999988877653 4899999999875421 1111223456779999999988876654 234799998
Q ss_pred CCCC-----------CCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCc
Q 010380 332 GAGS-----------GGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDL 383 (512)
Q Consensus 332 S~~a-----------~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~ 383 (512)
+-.. ......+...|++||+|.+++.+++.+.+ |+.|..+.-+.|--|-
T Consensus 132 TdeVYGds~~~~~~~E~s~~nPtnpyAasKaAaE~~v~Sy~~sy---~lpvv~~R~nnVYGP~ 191 (331)
T KOG0747|consen 132 TDEVYGDSDEDAVVGEASLLNPTNPYAASKAAAEMLVRSYGRSY---GLPVVTTRMNNVYGPN 191 (331)
T ss_pred ccceecCccccccccccccCCCCCchHHHHHHHHHHHHHHhhcc---CCcEEEEeccCccCCC
Confidence 7410 01112345679999999999999999987 6888888877776653
|
|
| >KOG1221 consensus Acyl-CoA reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.9e-05 Score=84.19 Aligned_cols=137 Identities=26% Similarity=0.320 Sum_probs=88.7
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC---CEEEEEEcChhh--HHHHH-HH----HHHHHhhhhhhcCCCCcccccCce
Q 010380 175 AGPRNVVITGSTRGLGKALAREFLLSG---DRVVVASRSSES--VRMTV-TE----LEENLKEGMMAAGGSSKKNLVHAK 244 (512)
Q Consensus 175 l~gk~vLVTGassGIG~aiA~~La~~G---a~Vvl~~R~~~~--l~~~~-~e----l~~~~~~~~~~~g~~~~~~~~g~~ 244 (512)
+++|+++||||+|.+|+-+.++|++.- -++++.-|.... .++-. ++ +-+.+.+ . ....-.+
T Consensus 10 ~~~k~i~vTG~tGFlgKVliEklLr~~p~v~~IYlLiR~k~g~~~~~Rl~~~~~~~lF~~l~~---~------~p~~l~K 80 (467)
T KOG1221|consen 10 YKNKTIFVTGATGFLGKVLIEKLLRTTPDVKRIYLLIRAKKGKAAQERLRTELKDPLFEVLKE---K------KPEALEK 80 (467)
T ss_pred hCCCeEEEEcccchhHHHHHHHHHhcCcCcceEEEEEecCCCCCHHHHHHHHHhhhHHHHHHh---h------Cccceec
Confidence 579999999999999999999999753 267777775221 11111 11 1111111 0 0002367
Q ss_pred EEEEEccCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCC
Q 010380 245 VAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKG 324 (512)
Q Consensus 245 v~~v~~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~ 324 (512)
+..+..|+++++---+--+.- .....+|++||+|+... + .|.++..+.+|..|+.++.+.+.....-+
T Consensus 81 v~pi~GDi~~~~LGis~~D~~-~l~~eV~ivih~AAtvr-F-------de~l~~al~iNt~Gt~~~l~lak~~~~l~--- 148 (467)
T KOG1221|consen 81 VVPIAGDISEPDLGISESDLR-TLADEVNIVIHSAATVR-F-------DEPLDVALGINTRGTRNVLQLAKEMVKLK--- 148 (467)
T ss_pred ceeccccccCcccCCChHHHH-HHHhcCCEEEEeeeeec-c-------chhhhhhhhhhhHhHHHHHHHHHHhhhhh---
Confidence 888999999765211111110 11237999999999765 2 25678899999999999999887765433
Q ss_pred CeEEeecCC
Q 010380 325 GHIFNMDGA 333 (512)
Q Consensus 325 g~IV~vSS~ 333 (512)
..+.+|.+
T Consensus 149 -~~vhVSTA 156 (467)
T KOG1221|consen 149 -ALVHVSTA 156 (467)
T ss_pred -eEEEeehh
Confidence 67777764
|
|
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=98.13 E-value=5e-05 Score=74.12 Aligned_cols=146 Identities=17% Similarity=0.247 Sum_probs=90.5
Q ss_pred EEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhhHH
Q 010380 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPADVQ 259 (512)
Q Consensus 180 vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~sv~ 259 (512)
|+||||+|.+|+.+++.|++.|++|.++.|+..+ ...+++++ .+ ++++.+|+.|.+++.
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~--~~~~~l~~-----------------~g--~~vv~~d~~~~~~l~ 59 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSS--DRAQQLQA-----------------LG--AEVVEADYDDPESLV 59 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHH--HHHHHHHH-----------------TT--TEEEES-TT-HHHHH
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccch--hhhhhhhc-----------------cc--ceEeecccCCHHHHH
Confidence 6899999999999999999999999999999743 22334433 23 355799999998888
Q ss_pred HHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCC
Q 010380 260 KLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSS 339 (512)
Q Consensus 260 ~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~~~~ 339 (512)
++++ .+|.+|++-+... ..+ ......+++++... +-.++|. ||.+.....
T Consensus 60 ~al~-------g~d~v~~~~~~~~---------~~~--------~~~~~~li~Aa~~a-----gVk~~v~-ss~~~~~~~ 109 (233)
T PF05368_consen 60 AALK-------GVDAVFSVTPPSH---------PSE--------LEQQKNLIDAAKAA-----GVKHFVP-SSFGADYDE 109 (233)
T ss_dssp HHHT-------TCSEEEEESSCSC---------CCH--------HHHHHHHHHHHHHH-----T-SEEEE-SEESSGTTT
T ss_pred HHHc-------CCceEEeecCcch---------hhh--------hhhhhhHHHhhhcc-----ccceEEE-EEecccccc
Confidence 7765 7899998887532 011 11122333444332 2346764 554333311
Q ss_pred ----CCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcc
Q 010380 340 ----TPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLL 384 (512)
Q Consensus 340 ----~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~ 384 (512)
.|....| ..|..++.+.+.. |+....|.||+....+.
T Consensus 110 ~~~~~p~~~~~-~~k~~ie~~l~~~-------~i~~t~i~~g~f~e~~~ 150 (233)
T PF05368_consen 110 SSGSEPEIPHF-DQKAEIEEYLRES-------GIPYTIIRPGFFMENLL 150 (233)
T ss_dssp TTTSTTHHHHH-HHHHHHHHHHHHC-------TSEBEEEEE-EEHHHHH
T ss_pred cccccccchhh-hhhhhhhhhhhhc-------cccceeccccchhhhhh
Confidence 1112223 4676666555433 79999999998765443
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=98.08 E-value=2.5e-05 Score=77.52 Aligned_cols=167 Identities=18% Similarity=0.173 Sum_probs=113.3
Q ss_pred cCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEcc
Q 010380 172 HCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACD 251 (512)
Q Consensus 172 ~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~D 251 (512)
.....+++|+||||.|.||..+|..|..+|+.|++++--..........+. ....+..+.-|
T Consensus 22 ~~p~~~lrI~itGgaGFIgSHLvdkLm~egh~VIa~Dn~ftg~k~n~~~~~------------------~~~~fel~~hd 83 (350)
T KOG1429|consen 22 VKPSQNLRILITGGAGFIGSHLVDKLMTEGHEVIALDNYFTGRKENLEHWI------------------GHPNFELIRHD 83 (350)
T ss_pred ccCCCCcEEEEecCcchHHHHHHHHHHhcCCeEEEEecccccchhhcchhc------------------cCcceeEEEee
Confidence 456778999999999999999999999999999998865443322222211 23456666667
Q ss_pred CCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeec
Q 010380 252 VCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD 331 (512)
Q Consensus 252 ltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vS 331 (512)
+..+ ++. .+|.++|-|....|.... . .--+++.+|+.+..++...+... +.+++..|
T Consensus 84 v~~p-----l~~-------evD~IyhLAapasp~~y~--~---npvktIktN~igtln~lglakrv------~aR~l~aS 140 (350)
T KOG1429|consen 84 VVEP-----LLK-------EVDQIYHLAAPASPPHYK--Y---NPVKTIKTNVIGTLNMLGLAKRV------GARFLLAS 140 (350)
T ss_pred chhH-----HHH-------HhhhhhhhccCCCCcccc--c---CccceeeecchhhHHHHHHHHHh------CceEEEee
Confidence 6554 333 478899999876532211 1 12457889999999998887554 35788877
Q ss_pred CCCCCC---------------CCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCC
Q 010380 332 GAGSGG---------------SSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTD 382 (512)
Q Consensus 332 S~~a~~---------------~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~ 382 (512)
++.... .+....+.|...|...+.|+....++. ||.|....+-.+--|
T Consensus 141 TseVYgdp~~hpq~e~ywg~vnpigpr~cydegKr~aE~L~~~y~k~~---giE~rIaRifNtyGP 203 (350)
T KOG1429|consen 141 TSEVYGDPLVHPQVETYWGNVNPIGPRSCYDEGKRVAETLCYAYHKQE---GIEVRIARIFNTYGP 203 (350)
T ss_pred cccccCCcccCCCccccccccCcCCchhhhhHHHHHHHHHHHHhhccc---CcEEEEEeeecccCC
Confidence 652111 122345789999999999988877664 777766666554444
|
|
| >COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00035 Score=69.16 Aligned_cols=131 Identities=18% Similarity=0.198 Sum_probs=89.2
Q ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhhH
Q 010380 179 NVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPADV 258 (512)
Q Consensus 179 ~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~sv 258 (512)
.++||||||.+|.+++++|.++|++|.+..|+.+++.... ..+.+...|+.+++++
T Consensus 2 ~ilV~GatG~~G~~~~~~L~~~~~~v~~~~r~~~~~~~~~------------------------~~v~~~~~d~~~~~~l 57 (275)
T COG0702 2 KILVTGATGFVGGAVVRELLARGHEVRAAVRNPEAAAALA------------------------GGVEVVLGDLRDPKSL 57 (275)
T ss_pred eEEEEecccchHHHHHHHHHhCCCEEEEEEeCHHHHHhhc------------------------CCcEEEEeccCCHhHH
Confidence 5899999999999999999999999999999988765432 3577889999999988
Q ss_pred HHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCC
Q 010380 259 QKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGS 338 (512)
Q Consensus 259 ~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~~~ 338 (512)
...++ .+|.+++..+... ... ..............+... ....+++.+|... ...
T Consensus 58 ~~a~~-------G~~~~~~i~~~~~-~~~----------~~~~~~~~~~~~~a~~a~------~~~~~~~~~s~~~-~~~ 112 (275)
T COG0702 58 VAGAK-------GVDGVLLISGLLD-GSD----------AFRAVQVTAVVRAAEAAG------AGVKHGVSLSVLG-ADA 112 (275)
T ss_pred HHHhc-------cccEEEEEecccc-ccc----------chhHHHHHHHHHHHHHhc------CCceEEEEeccCC-CCC
Confidence 77765 6788888777542 111 111222333333333332 1234677776552 211
Q ss_pred CCCCcchhhHHHHHHHHHHHHH
Q 010380 339 STPLTAVYGSTKCGLRQLQASL 360 (512)
Q Consensus 339 ~~p~~~~Y~aSKaAl~~l~~sL 360 (512)
.....|..+|...+....+.
T Consensus 113 --~~~~~~~~~~~~~e~~l~~s 132 (275)
T COG0702 113 --ASPSALARAKAAVEAALRSS 132 (275)
T ss_pred --CCccHHHHHHHHHHHHHHhc
Confidence 34567999999888776653
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=7.7e-05 Score=80.29 Aligned_cols=78 Identities=18% Similarity=0.289 Sum_probs=57.9
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcCh-hhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSS-ESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~-~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
++++|+++|+|+++ +|+++|+.|+++|++|++.+++. +.+++..+++.+ ..+.++..|.
T Consensus 2 ~~~~k~v~iiG~g~-~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~-------------------~~~~~~~~~~ 61 (450)
T PRK14106 2 ELKGKKVLVVGAGV-SGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGE-------------------LGIELVLGEY 61 (450)
T ss_pred CcCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHh-------------------cCCEEEeCCc
Confidence 57889999999877 99999999999999999999985 444444444432 1244667777
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNK 283 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~ 283 (512)
.+ +..+.+|+||+++|+..
T Consensus 62 ~~------------~~~~~~d~vv~~~g~~~ 80 (450)
T PRK14106 62 PE------------EFLEGVDLVVVSPGVPL 80 (450)
T ss_pred ch------------hHhhcCCEEEECCCCCC
Confidence 65 12357899999999743
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00012 Score=76.96 Aligned_cols=78 Identities=23% Similarity=0.348 Sum_probs=65.2
Q ss_pred CEEEEECCCChHHHHHHHHHHHCC-CEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChh
Q 010380 178 RNVVITGSTRGLGKALAREFLLSG-DRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPA 256 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~G-a~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~ 256 (512)
+.+||.|| |++|+.+|..|+++| .+|++++|+.++++++.+.. +.++.++++|+.|.+
T Consensus 2 ~~ilviGa-G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~--------------------~~~v~~~~vD~~d~~ 60 (389)
T COG1748 2 MKILVIGA-GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELI--------------------GGKVEALQVDAADVD 60 (389)
T ss_pred CcEEEECC-chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhc--------------------cccceeEEecccChH
Confidence 56899998 999999999999999 79999999998877665442 247889999999999
Q ss_pred hHHHHHHHHHHHcCCCcccccccccCC
Q 010380 257 DVQKLSNFAVNEFGSIDIWINNAGTNK 283 (512)
Q Consensus 257 sv~~~~~~i~~~~g~IDvLInnAG~~~ 283 (512)
++.+++++ .|++||++....
T Consensus 61 al~~li~~-------~d~VIn~~p~~~ 80 (389)
T COG1748 61 ALVALIKD-------FDLVINAAPPFV 80 (389)
T ss_pred HHHHHHhc-------CCEEEEeCCchh
Confidence 88887763 399999987643
|
|
| >KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00022 Score=75.15 Aligned_cols=176 Identities=18% Similarity=0.140 Sum_probs=104.9
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
.+.+..+|+|+||+|++|+-+++.|.++|+.|..+.|+.++.+.... +.. .......+..|.
T Consensus 75 ~~~~~~~VlVvGatG~vG~~iv~~llkrgf~vra~VRd~~~a~~~~~-~~~-----------------~d~~~~~v~~~~ 136 (411)
T KOG1203|consen 75 NSKKPTTVLVVGATGKVGRRIVKILLKRGFSVRALVRDEQKAEDLLG-VFF-----------------VDLGLQNVEADV 136 (411)
T ss_pred CCCCCCeEEEecCCCchhHHHHHHHHHCCCeeeeeccChhhhhhhhc-ccc-----------------cccccceeeecc
Confidence 35677899999999999999999999999999999999887665544 000 112333455555
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
..+.++..-+.+... -...+++-++|.-... + +..--..+.+.|..++..++... +-.++|++++
T Consensus 137 ~~~~d~~~~~~~~~~--~~~~~v~~~~ggrp~~---e-----d~~~p~~VD~~g~knlvdA~~~a-----Gvk~~vlv~s 201 (411)
T KOG1203|consen 137 VTAIDILKKLVEAVP--KGVVIVIKGAGGRPEE---E-----DIVTPEKVDYEGTKNLVDACKKA-----GVKRVVLVGS 201 (411)
T ss_pred ccccchhhhhhhhcc--ccceeEEecccCCCCc---c-----cCCCcceecHHHHHHHHHHHHHh-----CCceEEEEEe
Confidence 554443332222211 1245666666654311 1 11122245567777777777332 3458999988
Q ss_pred CCCCCCCCCCcchhhHHHHHHHH-HHHHHHHHhCCCCeEEEEEeCCcccCCcc
Q 010380 333 AGSGGSSTPLTAVYGSTKCGLRQ-LQASLFKESKRSKVGVHTASPGMVLTDLL 384 (512)
Q Consensus 333 ~~a~~~~~p~~~~Y~aSKaAl~~-l~~sLa~El~~~GIrVn~V~PG~V~T~~~ 384 (512)
++......+.+..+. .+... .-+....++...|+.-..|.||....+..
T Consensus 202 i~~~~~~~~~~~~~~---~~~~~~~k~~~e~~~~~Sgl~ytiIR~g~~~~~~~ 251 (411)
T KOG1203|consen 202 IGGTKFNQPPNILLL---NGLVLKAKLKAEKFLQDSGLPYTIIRPGGLEQDTG 251 (411)
T ss_pred ecCcccCCCchhhhh---hhhhhHHHHhHHHHHHhcCCCcEEEeccccccCCC
Confidence 754433333333331 11111 11233444557789999999998876543
|
|
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00075 Score=69.97 Aligned_cols=106 Identities=19% Similarity=0.245 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHHHhcceeEEeehhhHHHhhhh----------------cccCchhhHHHHHHHHHHHHHHHHHhhccc
Q 010380 103 AVAKVEKVFSSIAIQIGRCIVTMMSTGVVLAVGF----------------QLSGGDSQMNALIWYSWLGGIIIGTMVGAN 166 (512)
Q Consensus 103 ~~~~~~~~~~~~a~~ig~~~~~~~~~~~il~~~~----------------~ls~~~~~~~~l~~~~~~~~~~~~~~~~~~ 166 (512)
+.+|+.+.. ..|+..|--|+.+.....+..-.+ .++.+.++...++. -........
T Consensus 77 ~~~~~~~a~-~~a~~~G~~i~~Lg~~tsiv~~~~~~~~~~~~r~i~ie~~~~TtGNs~T~~ll~---~~V~la~~~---- 148 (340)
T PRK14982 77 ARRKVLNAM-ALAQKKGINITALGGFSSIIFENFNLLQHKQVRNTTLEWERFTTGNTHTAYVIC---RQVEQNAPR---- 148 (340)
T ss_pred HHHHHHHHH-HHHHHCCCeEEEcCChHHHhcCCcccccccccccceeccccccCCchhHHHHHH---HHHHHhHHH----
Confidence 336666665 567888999988776655552221 13344444211111 111111111
Q ss_pred ccccccCCCCCCEEEEECCCChHHHHHHHHHHHC-C-CEEEEEEcChhhHHHHHHH
Q 010380 167 MVLEEHCKAGPRNVVITGSTRGLGKALAREFLLS-G-DRVVVASRSSESVRMTVTE 220 (512)
Q Consensus 167 ~~~~~~~~l~gk~vLVTGassGIG~aiA~~La~~-G-a~Vvl~~R~~~~l~~~~~e 220 (512)
. ..++++|+|+||||+|.||..+|++|+++ | .+|++++|+.+++.+..++
T Consensus 149 --l--g~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~e 200 (340)
T PRK14982 149 --L--GIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAE 200 (340)
T ss_pred --h--ccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHH
Confidence 1 12588999999999999999999999864 6 5899999998877665544
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=97.63 E-value=8.7e-05 Score=66.80 Aligned_cols=48 Identities=19% Similarity=0.379 Sum_probs=43.5
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEEcChhhHHHHHHHH
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDR-VVVASRSSESVRMTVTEL 221 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~-Vvl~~R~~~~l~~~~~el 221 (512)
.++++++++|.|+ ||.|++++..|++.|++ |+++.|+.++++++.+++
T Consensus 8 ~~l~~~~vlviGa-Gg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~ 56 (135)
T PF01488_consen 8 GDLKGKRVLVIGA-GGAARAVAAALAALGAKEITIVNRTPERAEALAEEF 56 (135)
T ss_dssp STGTTSEEEEESS-SHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHH
T ss_pred CCcCCCEEEEECC-HHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHc
Confidence 3688999999997 99999999999999985 999999999988877776
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00015 Score=76.59 Aligned_cols=76 Identities=29% Similarity=0.463 Sum_probs=59.1
Q ss_pred EEEECCCChHHHHHHHHHHHCCC--EEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhh
Q 010380 180 VVITGSTRGLGKALAREFLLSGD--RVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPAD 257 (512)
Q Consensus 180 vLVTGassGIG~aiA~~La~~Ga--~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~s 257 (512)
|+|.|| |.+|..+++.|++++- +|++++|+.+++++..+++ .+.++..+++|+.|.++
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~-------------------~~~~~~~~~~d~~~~~~ 60 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKL-------------------LGDRVEAVQVDVNDPES 60 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT---------------------TTTTEEEEE--TTTHHH
T ss_pred CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhc-------------------cccceeEEEEecCCHHH
Confidence 689999 9999999999999984 8999999999988776654 23678999999999999
Q ss_pred HHHHHHHHHHHcCCCcccccccccC
Q 010380 258 VQKLSNFAVNEFGSIDIWINNAGTN 282 (512)
Q Consensus 258 v~~~~~~i~~~~g~IDvLInnAG~~ 282 (512)
+.++++ ..|++||++|..
T Consensus 61 l~~~~~-------~~dvVin~~gp~ 78 (386)
T PF03435_consen 61 LAELLR-------GCDVVINCAGPF 78 (386)
T ss_dssp HHHHHT-------TSSEEEE-SSGG
T ss_pred HHHHHh-------cCCEEEECCccc
Confidence 888765 459999999864
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >KOG2865 consensus NADH:ubiquinone oxidoreductase, NDUFA9/39kDa subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00038 Score=69.30 Aligned_cols=213 Identities=14% Similarity=0.129 Sum_probs=134.6
Q ss_pred cCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEcc
Q 010380 172 HCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACD 251 (512)
Q Consensus 172 ~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~D 251 (512)
.-+.+|-++-|.||||.+|+.++.+|++.|-+|++-.|-.+.-- .+++- .. .-+++.++..|
T Consensus 56 RsS~sGiVaTVFGAtGFlGryvvnklak~GSQviiPyR~d~~~~---r~lkv-mG--------------dLGQvl~~~fd 117 (391)
T KOG2865|consen 56 RSSVSGIVATVFGATGFLGRYVVNKLAKMGSQVIIPYRGDEYDP---RHLKV-MG--------------DLGQVLFMKFD 117 (391)
T ss_pred cccccceEEEEecccccccHHHHHHHhhcCCeEEEeccCCccch---hheee-cc--------------cccceeeeccC
Confidence 34567788999999999999999999999999999988654311 11111 00 12689999999
Q ss_pred CCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeec
Q 010380 252 VCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD 331 (512)
Q Consensus 252 ltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vS 331 (512)
+.|+++|+++++. -+++||-.|.-.+ ..+.+-+ ++|+.++-.+++.+-.. +--++|.+|
T Consensus 118 ~~DedSIr~vvk~-------sNVVINLIGrd~e---Tknf~f~------Dvn~~~aerlAricke~-----GVerfIhvS 176 (391)
T KOG2865|consen 118 LRDEDSIRAVVKH-------SNVVINLIGRDYE---TKNFSFE------DVNVHIAERLARICKEA-----GVERFIHVS 176 (391)
T ss_pred CCCHHHHHHHHHh-------CcEEEEeeccccc---cCCcccc------cccchHHHHHHHHHHhh-----Chhheeehh
Confidence 9999999998873 5899999997442 2333332 56777777776665432 334799998
Q ss_pred CCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCccc--CCcchhhhhhhhhhc---------
Q 010380 332 GAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLL--SGSTIQNKQMFNIIC--------- 400 (512)
Q Consensus 332 S~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~--~~~~~~~~~~~~~~~--------- 400 (512)
+.++. ....+-|=-||++-+--+ +.++. ....|.|..|--..-. +.....-+. +..+.
T Consensus 177 ~Lgan---v~s~Sr~LrsK~~gE~aV---rdafP----eAtIirPa~iyG~eDrfln~ya~~~rk-~~~~pL~~~GekT~ 245 (391)
T KOG2865|consen 177 CLGAN---VKSPSRMLRSKAAGEEAV---RDAFP----EATIIRPADIYGTEDRFLNYYASFWRK-FGFLPLIGKGEKTV 245 (391)
T ss_pred hcccc---ccChHHHHHhhhhhHHHH---HhhCC----cceeechhhhcccchhHHHHHHHHHHh-cCceeeecCCccee
Confidence 87533 334456777777765433 33443 2355677655422100 000000000 00000
Q ss_pred ---CCHHHHHHHhccccccchhhhhhhhhcCChHHHH
Q 010380 401 ---ELPETVARTLVPRIRVVKGSGKAINYLTPPRILL 434 (512)
Q Consensus 401 ---~~pe~vA~~~l~r~~~~~~va~~v~~L~s~~~~~ 434 (512)
.-.-++|..++.++..|+..+++..|.-|.+..+
T Consensus 246 K~PVyV~DVaa~IvnAvkDp~s~Gktye~vGP~~yql 282 (391)
T KOG2865|consen 246 KQPVYVVDVAAAIVNAVKDPDSMGKTYEFVGPDRYQL 282 (391)
T ss_pred eccEEEehHHHHHHHhccCccccCceeeecCCchhhH
Confidence 0235678888888888888888888877776543
|
|
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00036 Score=72.04 Aligned_cols=151 Identities=9% Similarity=0.084 Sum_probs=94.6
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGD--RVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga--~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
.+++|.|||++|.+|..+|..|+.++. +++++++++ ++....+|... .... ...|++
T Consensus 17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~--~~g~a~Dl~~~-----------------~~~~--~i~~~~ 75 (323)
T PLN00106 17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN--TPGVAADVSHI-----------------NTPA--QVRGFL 75 (323)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC--CCeeEchhhhC-----------------CcCc--eEEEEe
Confidence 456899999999999999999997774 799999987 21112233220 1111 222444
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
+.+++.+. +...|++|+.||... .+ . +.++..+..|+.....+.+ .+.+....+.++++|-.
T Consensus 76 ~~~d~~~~-------l~~aDiVVitAG~~~--~~--g---~~R~dll~~N~~i~~~i~~----~i~~~~p~aivivvSNP 137 (323)
T PLN00106 76 GDDQLGDA-------LKGADLVIIPAGVPR--KP--G---MTRDDLFNINAGIVKTLCE----AVAKHCPNALVNIISNP 137 (323)
T ss_pred CCCCHHHH-------cCCCCEEEEeCCCCC--CC--C---CCHHHHHHHHHHHHHHHHH----HHHHHCCCeEEEEeCCC
Confidence 44333332 347899999999854 11 1 3466778888877555544 44444334455555443
Q ss_pred CC-----------CCCCCCCcchhhHHHHHHHHHHHHHHHHhC
Q 010380 334 GS-----------GGSSTPLTAVYGSTKCGLRQLQASLFKESK 365 (512)
Q Consensus 334 ~a-----------~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~ 365 (512)
.- ...+.|..-.|+.++.-...|-..++.++.
T Consensus 138 vD~~~~i~t~~~~~~s~~p~~~viG~~~LDs~Rl~~~lA~~lg 180 (323)
T PLN00106 138 VNSTVPIAAEVLKKAGVYDPKKLFGVTTLDVVRANTFVAEKKG 180 (323)
T ss_pred ccccHHHHHHHHHHcCCCCcceEEEEecchHHHHHHHHHHHhC
Confidence 21 113345567788888777788888888885
|
|
| >PRK09620 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00011 Score=72.19 Aligned_cols=36 Identities=22% Similarity=0.378 Sum_probs=32.5
Q ss_pred CCCCEEEEECCC----------------ChHHHHHHHHHHHCCCEEEEEEcC
Q 010380 175 AGPRNVVITGST----------------RGLGKALAREFLLSGDRVVVASRS 210 (512)
Q Consensus 175 l~gk~vLVTGas----------------sGIG~aiA~~La~~Ga~Vvl~~R~ 210 (512)
+.||+|+||+|. |-+|.++|++|+++|++|+++++.
T Consensus 1 l~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 1 MKGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred CCCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 478999999886 899999999999999999988764
|
|
| >cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR) | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0011 Score=66.56 Aligned_cols=139 Identities=14% Similarity=0.193 Sum_probs=83.5
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCCh
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEP 255 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~ 255 (512)
.+++++|+|+++++|.++++.+...|++|+++++++++.+.+ .++ +.. ..+|..+.
T Consensus 144 ~g~~vlI~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~-~~~--------------------g~~---~~~~~~~~ 199 (325)
T cd08253 144 AGETVLVHGGSGAVGHAAVQLARWAGARVIATASSAEGAELV-RQA--------------------GAD---AVFNYRAE 199 (325)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HHc--------------------CCC---EEEeCCCc
Confidence 578999999999999999999999999999999987665433 111 111 12455555
Q ss_pred hhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCC-
Q 010380 256 ADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAG- 334 (512)
Q Consensus 256 ~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~- 334 (512)
+..+.+.+.. . ...+|++++++|... .+.. ...+. ..|+++++++..
T Consensus 200 ~~~~~~~~~~-~-~~~~d~vi~~~~~~~------------~~~~---------------~~~l~---~~g~~v~~~~~~~ 247 (325)
T cd08253 200 DLADRILAAT-A-GQGVDVIIEVLANVN------------LAKD---------------LDVLA---PGGRIVVYGSGGL 247 (325)
T ss_pred CHHHHHHHHc-C-CCceEEEEECCchHH------------HHHH---------------HHhhC---CCCEEEEEeecCC
Confidence 4444443322 1 136999999987411 1111 11222 357888886521
Q ss_pred ----------CCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeE
Q 010380 335 ----------SGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVG 370 (512)
Q Consensus 335 ----------a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIr 370 (512)
......+....|..+|..+..+.+.+...+....++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 293 (325)
T cd08253 248 RGTIPINPLMAKEASIRGVLLYTATPEERAAAAEAIAAGLADGALR 293 (325)
T ss_pred cCCCChhHHHhcCceEEeeehhhcCHHHHHHHHHHHHHHHHCCCcc
Confidence 000111222356677777777777777666544443
|
Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts |
| >KOG2733 consensus Uncharacterized membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00041 Score=70.97 Aligned_cols=85 Identities=21% Similarity=0.339 Sum_probs=70.1
Q ss_pred EEEEECCCChHHHHHHHHHHH----CCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCC
Q 010380 179 NVVITGSTRGLGKALAREFLL----SGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCE 254 (512)
Q Consensus 179 ~vLVTGassGIG~aiA~~La~----~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd 254 (512)
-++|-||||--|.-+++++.+ .|..+.+++||++++++..+++.+..+. . ....+ .+.||.+|
T Consensus 7 DvVIyGASGfTG~yivee~v~~~~~~~~slavAGRn~~KL~~vL~~~~~k~~~-----------~-ls~~~-i~i~D~~n 73 (423)
T KOG2733|consen 7 DVVIYGASGFTGKYIVEEAVSSQVFEGLSLAVAGRNEKKLQEVLEKVGEKTGT-----------D-LSSSV-ILIADSAN 73 (423)
T ss_pred eEEEEccccccceeeHHHHhhhhcccCceEEEecCCHHHHHHHHHHHhhccCC-----------C-cccce-EEEecCCC
Confidence 369999999999999999999 7889999999999999998888764321 0 22334 78999999
Q ss_pred hhhHHHHHHHHHHHcCCCcccccccccCC
Q 010380 255 PADVQKLSNFAVNEFGSIDIWINNAGTNK 283 (512)
Q Consensus 255 ~~sv~~~~~~i~~~~g~IDvLInnAG~~~ 283 (512)
++++.+++.+. .++|||+|...
T Consensus 74 ~~Sl~emak~~-------~vivN~vGPyR 95 (423)
T KOG2733|consen 74 EASLDEMAKQA-------RVIVNCVGPYR 95 (423)
T ss_pred HHHHHHHHhhh-------EEEEeccccce
Confidence 99999998854 68999999643
|
|
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0058 Score=57.49 Aligned_cols=151 Identities=19% Similarity=0.226 Sum_probs=99.0
Q ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhhH
Q 010380 179 NVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPADV 258 (512)
Q Consensus 179 ~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~sv 258 (512)
.+-|.||||-.|..++++..++|+.|+.+.|++.++.+. ..+..++.|+.|++++
T Consensus 2 KIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~-------------------------~~~~i~q~Difd~~~~ 56 (211)
T COG2910 2 KIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAAR-------------------------QGVTILQKDIFDLTSL 56 (211)
T ss_pred eEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhcccc-------------------------ccceeecccccChhhh
Confidence 468999999999999999999999999999998876421 2455688999999987
Q ss_pred HHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCCC-
Q 010380 259 QKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGG- 337 (512)
Q Consensus 259 ~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~~- 337 (512)
.+.+. +.|+||..-|...+ +.+ +.+.. -.+.++..++.. +..|++.+.++++-.
T Consensus 57 a~~l~-------g~DaVIsA~~~~~~-------~~~--~~~~k--------~~~~li~~l~~a-gv~RllVVGGAGSL~i 111 (211)
T COG2910 57 ASDLA-------GHDAVISAFGAGAS-------DND--ELHSK--------SIEALIEALKGA-GVPRLLVVGGAGSLEI 111 (211)
T ss_pred Hhhhc-------CCceEEEeccCCCC-------Chh--HHHHH--------HHHHHHHHHhhc-CCeeEEEEcCccceEE
Confidence 55443 78999998886531 111 11111 144455555543 567888887764322
Q ss_pred ------CCCCCc-chhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCC
Q 010380 338 ------SSTPLT-AVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTD 382 (512)
Q Consensus 338 ------~~~p~~-~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~ 382 (512)
...|.+ ..|-..-.+..-+.+.|+.|- ++...-|+|...-.|
T Consensus 112 d~g~rLvD~p~fP~ey~~~A~~~ae~L~~Lr~~~---~l~WTfvSPaa~f~P 160 (211)
T COG2910 112 DEGTRLVDTPDFPAEYKPEALAQAEFLDSLRAEK---SLDWTFVSPAAFFEP 160 (211)
T ss_pred cCCceeecCCCCchhHHHHHHHHHHHHHHHhhcc---CcceEEeCcHHhcCC
Confidence 122332 234433333344445565553 488888899877666
|
|
| >KOG1372 consensus GDP-mannose 4,6 dehydratase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0012 Score=64.54 Aligned_cols=177 Identities=16% Similarity=0.069 Sum_probs=114.3
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChh
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPA 256 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~ 256 (512)
.|++||||-+|-=|..+|.-|+.+|+.|.-+-|+....... .++..+.+ +....+......-.|++|..
T Consensus 28 rkvALITGItGQDGSYLaEfLL~KgYeVHGiiRRsSsFNT~--RIeHlY~n---------P~~h~~~~mkLHYgDmTDss 96 (376)
T KOG1372|consen 28 RKVALITGITGQDGSYLAEFLLSKGYEVHGIIRRSSSFNTA--RIEHLYSN---------PHTHNGASMKLHYGDMTDSS 96 (376)
T ss_pred ceEEEEecccCCCchHHHHHHHhCCceeeEEEeeccccchh--hhhhhhcC---------chhcccceeEEeeccccchH
Confidence 46999999999999999999999999999887765554322 22222221 11123467778889999999
Q ss_pred hHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCC--
Q 010380 257 DVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAG-- 334 (512)
Q Consensus 257 sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~-- 334 (512)
.+.++++.+ .++-+.|-|.... .. ++-|--+-+-++...|++.++.++...-... +-++--.|++.
T Consensus 97 ~L~k~I~~i-----kPtEiYnLaAQSH-Vk----vSFdlpeYTAeVdavGtLRlLdAi~~c~l~~--~VrfYQAstSEly 164 (376)
T KOG1372|consen 97 CLIKLISTI-----KPTEVYNLAAQSH-VK----VSFDLPEYTAEVDAVGTLRLLDAIRACRLTE--KVRFYQASTSELY 164 (376)
T ss_pred HHHHHHhcc-----Cchhhhhhhhhcc-eE----EEeecccceeeccchhhhhHHHHHHhcCccc--ceeEEecccHhhc
Confidence 999999887 5788888887654 22 2222234455778889999888876654332 22333333221
Q ss_pred --------CCCCCCCCcchhhHHHHHHHHHHHHHHHHh---CCCCeEEEEEeC
Q 010380 335 --------SGGSSTPLTAVYGSTKCGLRQLQASLFKES---KRSKVGVHTASP 376 (512)
Q Consensus 335 --------a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El---~~~GIrVn~V~P 376 (512)
+...|..+.+.|+++|.+-...+-..+..+ +=.||-.|.=+|
T Consensus 165 Gkv~e~PQsE~TPFyPRSPYa~aKmy~~WivvNyREAYnmfAcNGILFNHESP 217 (376)
T KOG1372|consen 165 GKVQEIPQSETTPFYPRSPYAAAKMYGYWIVVNYREAYNMFACNGILFNHESP 217 (376)
T ss_pred ccccCCCcccCCCCCCCChhHHhhhhheEEEEEhHHhhcceeeccEeecCCCC
Confidence 112334456899999987655544444443 234666666555
|
|
| >KOG2774 consensus NAD dependent epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0017 Score=63.01 Aligned_cols=162 Identities=19% Similarity=0.233 Sum_probs=104.2
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHC-CC-EEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEcc
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLS-GD-RVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACD 251 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~-Ga-~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~D 251 (512)
+-+...++|||+-|-+|..+|..|-.+ |. .|++.+....... ..+ .| -++-.|
T Consensus 41 ~~~~PrvLITG~LGQLG~~~A~LLR~~yGs~~VILSDI~KPp~~-----V~~-----------------~G---PyIy~D 95 (366)
T KOG2774|consen 41 TQKAPRVLITGSLGQLGRGLASLLRYMYGSECVILSDIVKPPAN-----VTD-----------------VG---PYIYLD 95 (366)
T ss_pred cCCCCeEEEecchHHHhHHHHHHHHHHhCCccEehhhccCCchh-----hcc-----------------cC---Cchhhh
Confidence 445678999999999999999998754 64 5776654432211 000 11 246679
Q ss_pred CCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeec
Q 010380 252 VCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD 331 (512)
Q Consensus 252 ltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vS 331 (512)
+-|...+++++-. .+||-|||-...... +.+...-...++|+.|.-++.+.+..+- -++..-|
T Consensus 96 ILD~K~L~eIVVn-----~RIdWL~HfSALLSA------vGE~NVpLA~~VNI~GvHNil~vAa~~k------L~iFVPS 158 (366)
T KOG2774|consen 96 ILDQKSLEEIVVN-----KRIDWLVHFSALLSA------VGETNVPLALQVNIRGVHNILQVAAKHK------LKVFVPS 158 (366)
T ss_pred hhccccHHHhhcc-----cccceeeeHHHHHHH------hcccCCceeeeecchhhhHHHHHHHHcC------eeEeecc
Confidence 9998888877532 389999987765331 1122334567899999999988776542 2344444
Q ss_pred CCCCCCCC------CC------CcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEE-eCCcccC
Q 010380 332 GAGSGGSS------TP------LTAVYGSTKCGLRQLQASLFKESKRSKVGVHTA-SPGMVLT 381 (512)
Q Consensus 332 S~~a~~~~------~p------~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V-~PG~V~T 381 (512)
.++ .+.+ .| ....|+.||.-.+.+-+.+...+ |+..-|+ .||.+..
T Consensus 159 TIG-AFGPtSPRNPTPdltIQRPRTIYGVSKVHAEL~GEy~~hrF---g~dfr~~rfPg~is~ 217 (366)
T KOG2774|consen 159 TIG-AFGPTSPRNPTPDLTIQRPRTIYGVSKVHAELLGEYFNHRF---GVDFRSMRFPGIISA 217 (366)
T ss_pred ccc-ccCCCCCCCCCCCeeeecCceeechhHHHHHHHHHHHHhhc---CccceecccCccccc
Confidence 443 2222 22 23679999999999998888876 4544444 3665554
|
|
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0019 Score=66.66 Aligned_cols=150 Identities=11% Similarity=0.089 Sum_probs=89.4
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC--CEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 175 AGPRNVVITGSTRGLGKALAREFLLSG--DRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 175 l~gk~vLVTGassGIG~aiA~~La~~G--a~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
++.+.|.|||++|.+|..+|..|+.++ .++++++++ .++....++... .. .....+.
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~--~~~g~a~Dl~~~-----------------~~--~~~v~~~ 64 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIV--GAPGVAADLSHI-----------------DT--PAKVTGY 64 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecC--CCcccccchhhc-----------------Cc--CceEEEe
Confidence 455689999999999999999999666 589999993 222222233321 11 1233456
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|+.+..+. ....|++|++||... .+ .+.+...+..|+...-.+.+. |.+. +..++|+++|
T Consensus 65 td~~~~~~~-------l~gaDvVVitaG~~~--~~-----~~tR~dll~~N~~i~~~i~~~----i~~~-~~~~iviv~S 125 (321)
T PTZ00325 65 ADGELWEKA-------LRGADLVLICAGVPR--KP-----GMTRDDLFNTNAPIVRDLVAA----VASS-APKAIVGIVS 125 (321)
T ss_pred cCCCchHHH-------hCCCCEEEECCCCCC--CC-----CCCHHHHHHHHHHHHHHHHHH----HHHH-CCCeEEEEec
Confidence 664443222 236899999999743 11 133566788888766555544 4444 3446666665
Q ss_pred CCC------------CCCCCCCcchhhHHHHHHHHHHHHHHHHh
Q 010380 333 AGS------------GGSSTPLTAVYGSTKCGLRQLQASLFKES 364 (512)
Q Consensus 333 ~~a------------~~~~~p~~~~Y~aSKaAl~~l~~sLa~El 364 (512)
... ...+.|..-.|+.+-.=-.-|-..++..+
T Consensus 126 NPvdv~~~~~~~~~~~~sg~p~~~viG~g~LDs~R~r~~la~~l 169 (321)
T PTZ00325 126 NPVNSTVPIAAETLKKAGVYDPRKLFGVTTLDVVRARKFVAEAL 169 (321)
T ss_pred CcHHHHHHHHHhhhhhccCCChhheeechhHHHHHHHHHHHHHh
Confidence 311 22334555677776222234556666666
|
|
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.00074 Score=72.60 Aligned_cols=49 Identities=22% Similarity=0.198 Sum_probs=39.2
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHH
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELE 222 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~ 222 (512)
|++.+|+++|||+++ +|.++|+.|+++|++|++.+++........+++.
T Consensus 1 ~~~~~k~v~v~G~g~-~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~ 49 (447)
T PRK02472 1 TEYQNKKVLVLGLAK-SGYAAAKLLHKLGANVTVNDGKPFSENPEAQELL 49 (447)
T ss_pred CCcCCCEEEEEeeCH-HHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHH
Confidence 356899999999975 9999999999999999999987654434444443
|
|
| >KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.003 Score=58.88 Aligned_cols=164 Identities=14% Similarity=0.084 Sum_probs=101.8
Q ss_pred ccccCCCCCCEEEEECCCChHHHHHHHHHHHCC--CEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEE
Q 010380 169 LEEHCKAGPRNVVITGSTRGLGKALAREFLLSG--DRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVA 246 (512)
Q Consensus 169 ~~~~~~l~gk~vLVTGassGIG~aiA~~La~~G--a~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~ 246 (512)
..+.+.++++.++|.||++-.|..+.+++++.+ .+|+++.|++..-.+ .+..+.
T Consensus 10 lrEDf~mq~~s~fvlGAtG~~G~~llk~~~E~~~FSKV~~i~RR~~~d~a------------------------t~k~v~ 65 (238)
T KOG4039|consen 10 LREDFRMQNMSGFVLGATGLCGGGLLKHAQEAPQFSKVYAILRRELPDPA------------------------TDKVVA 65 (238)
T ss_pred HHHHHhhhccceEEEeccccccHHHHHHHHhcccceeEEEEEeccCCCcc------------------------ccceee
Confidence 344577889999999999999999999999998 389999997422111 233455
Q ss_pred EEEccCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCe
Q 010380 247 GIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGH 326 (512)
Q Consensus 247 ~v~~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~ 326 (512)
-...|.+..++... .+-.+|+++++-|...+..-.+. .+.+..--.+.+.+ |.+.++-.+
T Consensus 66 q~~vDf~Kl~~~a~-------~~qg~dV~FcaLgTTRgkaGadg--------fykvDhDyvl~~A~-----~AKe~Gck~ 125 (238)
T KOG4039|consen 66 QVEVDFSKLSQLAT-------NEQGPDVLFCALGTTRGKAGADG--------FYKVDHDYVLQLAQ-----AAKEKGCKT 125 (238)
T ss_pred eEEechHHHHHHHh-------hhcCCceEEEeecccccccccCc--------eEeechHHHHHHHH-----HHHhCCCeE
Confidence 56667665544332 23478999999987652111111 11111111112222 333335568
Q ss_pred EEeecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCccc
Q 010380 327 IFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLL 385 (512)
Q Consensus 327 IV~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~ 385 (512)
++.+||.++.. .....|--.|.-++.=...|.-+ ++....||++.-+-..
T Consensus 126 fvLvSS~GAd~---sSrFlY~k~KGEvE~~v~eL~F~------~~~i~RPG~ll~~R~e 175 (238)
T KOG4039|consen 126 FVLVSSAGADP---SSRFLYMKMKGEVERDVIELDFK------HIIILRPGPLLGERTE 175 (238)
T ss_pred EEEEeccCCCc---ccceeeeeccchhhhhhhhcccc------EEEEecCcceeccccc
Confidence 99999875432 23356888888777655544332 6788999999765443
|
|
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0024 Score=58.09 Aligned_cols=47 Identities=21% Similarity=0.393 Sum_probs=40.1
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEEcChhhHHHHHHHH
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSG-DRVVVASRSSESVRMTVTEL 221 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~G-a~Vvl~~R~~~~l~~~~~el 221 (512)
.+++++++|+|+ +++|.++++.|++.| .+|++++|+.++.++..+++
T Consensus 16 ~~~~~~i~iiG~-G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~ 63 (155)
T cd01065 16 ELKGKKVLILGA-GGAARAVAYALAELGAAKIVIVNRTLEKAKALAERF 63 (155)
T ss_pred CCCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHH
Confidence 356789999998 899999999999996 78999999988877666554
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.003 Score=63.49 Aligned_cols=48 Identities=21% Similarity=0.323 Sum_probs=41.8
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHH
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELE 222 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~ 222 (512)
..++|+++|+|+ ||+|++++..|++.|++|++++|+.++++++.+++.
T Consensus 114 ~~~~k~vliiGa-Gg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~ 161 (270)
T TIGR00507 114 LRPNQRVLIIGA-GGAARAVALPLLKADCNVIIANRTVSKAEELAERFQ 161 (270)
T ss_pred CccCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHh
Confidence 356889999998 699999999999999999999999988877766653
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0036 Score=64.80 Aligned_cols=117 Identities=13% Similarity=0.161 Sum_probs=68.1
Q ss_pred CEEEEECCCChHHHHHHHHHHHCC-------CEEEEEEcChh--hHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEE
Q 010380 178 RNVVITGSTRGLGKALAREFLLSG-------DRVVVASRSSE--SVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGI 248 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~G-------a~Vvl~~R~~~--~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v 248 (512)
-.|+||||+|.+|..++..|+..+ .+|+++++++. .++....++.+ .. ...
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d-------------------~~-~~~ 62 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQD-------------------CA-FPL 62 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhh-------------------cc-ccc
Confidence 458999999999999999999855 58999999653 12211111111 00 001
Q ss_pred EccCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCC-CCCeE
Q 010380 249 ACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQP-KGGHI 327 (512)
Q Consensus 249 ~~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~-~~g~I 327 (512)
..|+....++ .+.+...|++|+.||.... ...+. ++.++.|+. +.+...+.+.+.. ..+.+
T Consensus 63 ~~~~~~~~~~-------~~~l~~aDiVI~tAG~~~~----~~~~R---~~l~~~N~~----i~~~i~~~i~~~~~~~~ii 124 (325)
T cd01336 63 LKSVVATTDP-------EEAFKDVDVAILVGAMPRK----EGMER---KDLLKANVK----IFKEQGEALDKYAKKNVKV 124 (325)
T ss_pred cCCceecCCH-------HHHhCCCCEEEEeCCcCCC----CCCCH---HHHHHHHHH----HHHHHHHHHHHhCCCCeEE
Confidence 1133222222 2233479999999998541 12232 445666654 4455566666653 35677
Q ss_pred EeecC
Q 010380 328 FNMDG 332 (512)
Q Consensus 328 V~vSS 332 (512)
+++|.
T Consensus 125 ivvsN 129 (325)
T cd01336 125 LVVGN 129 (325)
T ss_pred EEecC
Confidence 77754
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0027 Score=60.38 Aligned_cols=81 Identities=26% Similarity=0.293 Sum_probs=48.3
Q ss_pred CCCCEEEEECC----------------CChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcc
Q 010380 175 AGPRNVVITGS----------------TRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKK 238 (512)
Q Consensus 175 l~gk~vLVTGa----------------ssGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~ 238 (512)
++||+||||+| ||-.|.++|++++.+|++|+++..... +.
T Consensus 1 l~gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~-~~----------------------- 56 (185)
T PF04127_consen 1 LKGKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPSS-LP----------------------- 56 (185)
T ss_dssp -TT-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TTS--------------------------
T ss_pred CCCCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCcc-cc-----------------------
Confidence 46888999885 568999999999999999999887632 11
Q ss_pred cccCceEEEEEccCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCC
Q 010380 239 NLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKP 287 (512)
Q Consensus 239 ~~~g~~v~~v~~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~ 287 (512)
.+..+..+ ++.+.+++ .+.+.+.+..-|++|++|.+.+ +.+
T Consensus 57 --~p~~~~~i--~v~sa~em---~~~~~~~~~~~Di~I~aAAVsD-f~p 97 (185)
T PF04127_consen 57 --PPPGVKVI--RVESAEEM---LEAVKELLPSADIIIMAAAVSD-FRP 97 (185)
T ss_dssp ----TTEEEE--E-SSHHHH---HHHHHHHGGGGSEEEE-SB--S-EEE
T ss_pred --ccccceEE--Eecchhhh---hhhhccccCcceeEEEecchhh-eee
Confidence 01233333 44444444 4444455555699999999986 443
|
These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A. |
| >KOG1431 consensus GDP-L-fucose synthetase [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.015 Score=56.43 Aligned_cols=148 Identities=16% Similarity=0.110 Sum_probs=87.6
Q ss_pred CEEEEECCCChHHHHHHHHHHHCCC---EEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCC
Q 010380 178 RNVVITGSTRGLGKALAREFLLSGD---RVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCE 254 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~Ga---~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd 254 (512)
++++|||++|=.|.||.+.+.++|. +.++.+. -.||+++
T Consensus 2 ~kIlVtGg~GLVGsAi~~vv~~q~~~~e~wvf~~s--------------------------------------kd~DLt~ 43 (315)
T KOG1431|consen 2 KKILVTGGTGLVGSAIVKVVQEQGFDDENWVFIGS--------------------------------------KDADLTN 43 (315)
T ss_pred ceEEEecCCchHHHHHHHHHHhcCCCCcceEEecc--------------------------------------ccccccc
Confidence 6799999999999999999999885 3444332 2369999
Q ss_pred hhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEee-cCC
Q 010380 255 PADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNM-DGA 333 (512)
Q Consensus 255 ~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~v-SS~ 333 (512)
.++++++++.. ++..+||.|+...+...-.....|-|...+++| -++++.+..+-.+ .++.. |+.
T Consensus 44 ~a~t~~lF~~e-----kPthVIhlAAmVGGlf~N~~ynldF~r~Nl~in----dNVlhsa~e~gv~-----K~vsclStC 109 (315)
T KOG1431|consen 44 LADTRALFESE-----KPTHVIHLAAMVGGLFHNNTYNLDFIRKNLQIN----DNVLHSAHEHGVK-----KVVSCLSTC 109 (315)
T ss_pred hHHHHHHHhcc-----CCceeeehHhhhcchhhcCCCchHHHhhcceec----hhHHHHHHHhchh-----hhhhhccee
Confidence 99999999865 577888888754321111223344444443332 2233333222111 12222 211
Q ss_pred C--------------CCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCccc
Q 010380 334 G--------------SGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVL 380 (512)
Q Consensus 334 ~--------------a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~ 380 (512)
. ....+.|..-.|+-+|..+.-..++.+.+++ -...++.|-.+-
T Consensus 110 IfPdkt~yPIdEtmvh~gpphpsN~gYsyAKr~idv~n~aY~~qhg---~~~tsviPtNvf 167 (315)
T KOG1431|consen 110 IFPDKTSYPIDETMVHNGPPHPSNFGYSYAKRMIDVQNQAYRQQHG---RDYTSVIPTNVF 167 (315)
T ss_pred ecCCCCCCCCCHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHhC---Cceeeecccccc
Confidence 0 1112234445699999877777788888875 344444454443
|
|
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.027 Score=57.69 Aligned_cols=115 Identities=22% Similarity=0.275 Sum_probs=74.3
Q ss_pred EEEEECCCChHHHHHHHHHHHCC--CEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChh
Q 010380 179 NVVITGSTRGLGKALAREFLLSG--DRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPA 256 (512)
Q Consensus 179 ~vLVTGassGIG~aiA~~La~~G--a~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~ 256 (512)
.|.|.|+ |++|.++|..|+..| .+|++++|++++++....++.+.... .+..+.... .+.+
T Consensus 2 kI~IIGa-G~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~-------------~~~~~~i~~---~~~~ 64 (306)
T cd05291 2 KVVIIGA-GHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAF-------------LPSPVKIKA---GDYS 64 (306)
T ss_pred EEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhc-------------cCCCeEEEc---CCHH
Confidence 5788896 899999999999999 58999999999888888777653211 111222221 2222
Q ss_pred hHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 257 DVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 257 sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+ ...-|++|+++|... .+ ..+. ...++.|. .+.+...+.+.+....+.++++|-
T Consensus 65 ~-----------l~~aDIVIitag~~~--~~--g~~R---~dll~~N~----~i~~~~~~~i~~~~~~~~vivvsN 118 (306)
T cd05291 65 D-----------CKDADIVVITAGAPQ--KP--GETR---LDLLEKNA----KIMKSIVPKIKASGFDGIFLVASN 118 (306)
T ss_pred H-----------hCCCCEEEEccCCCC--CC--CCCH---HHHHHHHH----HHHHHHHHHHHHhCCCeEEEEecC
Confidence 1 236899999999854 21 2233 23444454 345566666666656677777753
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.039 Score=50.04 Aligned_cols=115 Identities=15% Similarity=0.190 Sum_probs=75.5
Q ss_pred EEEEECCCChHHHHHHHHHHHCCC--EEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChh
Q 010380 179 NVVITGSTRGLGKALAREFLLSGD--RVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPA 256 (512)
Q Consensus 179 ~vLVTGassGIG~aiA~~La~~Ga--~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~ 256 (512)
.|.|+|++|.+|..+|..|...+. +++++++++++++....++...... ......... .+++
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~-------------~~~~~~i~~---~~~~ 65 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAP-------------LPSPVRITS---GDYE 65 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHG-------------STEEEEEEE---SSGG
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhh-------------ccccccccc---cccc
Confidence 478999999999999999999884 7999999999888888887764321 122333333 3333
Q ss_pred hHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeec
Q 010380 257 DVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD 331 (512)
Q Consensus 257 sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vS 331 (512)
++ ..-|++|..||... . ...+ -.+.++.|.. +.+...+.+.+....+.++.++
T Consensus 66 ~~-----------~~aDivvitag~~~--~--~g~s---R~~ll~~N~~----i~~~~~~~i~~~~p~~~vivvt 118 (141)
T PF00056_consen 66 AL-----------KDADIVVITAGVPR--K--PGMS---RLDLLEANAK----IVKEIAKKIAKYAPDAIVIVVT 118 (141)
T ss_dssp GG-----------TTESEEEETTSTSS--S--TTSS---HHHHHHHHHH----HHHHHHHHHHHHSTTSEEEE-S
T ss_pred cc-----------ccccEEEEeccccc--c--cccc---HHHHHHHhHh----HHHHHHHHHHHhCCccEEEEeC
Confidence 32 35799999999753 1 2223 2344555654 4455555555554566777764
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >PRK06849 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.012 Score=62.27 Aligned_cols=39 Identities=28% Similarity=0.365 Sum_probs=35.4
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhH
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESV 214 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l 214 (512)
++|+|||||++.++|+.+|+.|.+.|++|++++.++...
T Consensus 3 ~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~~~~ 41 (389)
T PRK06849 3 TKKTVLITGARAPAALELARLFHNAGHTVILADSLKYPL 41 (389)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHH
Confidence 468999999999999999999999999999999886554
|
|
| >TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.018 Score=73.62 Aligned_cols=179 Identities=12% Similarity=0.120 Sum_probs=112.4
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCC
Q 010380 175 AGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCE 254 (512)
Q Consensus 175 l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd 254 (512)
+.++.++|++..++++.+++..|.++|+.|+++..... ....... ....+..+.+.-.|
T Consensus 1753 ~~~~~~~v~~d~~~~~~~L~~~L~~~G~~v~~~~~~~~-~~~~~~~--------------------~~~~~~~~~~~~~~ 1811 (2582)
T TIGR02813 1753 QSGANALVIDDDGHNAGVLAEKLIAAGWQVAVVRSPWV-VSHSASP--------------------LASAIASVTLGTID 1811 (2582)
T ss_pred ccCceeEEEcCCcchHHHHHHHHHhCCCeEEEeecccc-ccccccc--------------------cccccccccccccc
Confidence 45788888888999999999999999999887742211 0000000 11122234555556
Q ss_pred hhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCC
Q 010380 255 PADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAG 334 (512)
Q Consensus 255 ~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~ 334 (512)
..++..+++.+....+.++.+||-.+.... .....+.......-...+...|.+.|.+.+.+... +.+.++.++...
T Consensus 1812 ~~~~~~~~~~~~~~~~~~~g~i~l~~~~~~--~~~~~~~~~~~~~~~~~l~~~f~~ak~~~~~l~~~-~~~~~~~vsr~~ 1888 (2582)
T TIGR02813 1812 DTSIEAVIKDIEEKTAQIDGFIHLQPQHKS--VADKVDAIELPEAAKQSLMLAFLFAKLLNVKLATN-ARASFVTVSRID 1888 (2582)
T ss_pred hHHHHHHHHhhhccccccceEEEecccccc--ccccccccccchhhHHHHHHHHHHHHhhchhhccC-CCeEEEEEEecC
Confidence 778888888887778899999997775421 00000000111111233445678888877766543 456888888763
Q ss_pred CCCCCCCCcchh--------hHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCc
Q 010380 335 SGGSSTPLTAVY--------GSTKCGLRQLQASLFKESKRSKVGVHTASPGM 378 (512)
Q Consensus 335 a~~~~~p~~~~Y--------~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~ 378 (512)
+..+......- ....+++.+|+|++++|+..--+|...+.|..
T Consensus 1889 -G~~g~~~~~~~~~~~~~~~~~~~a~l~Gl~Ktl~~E~P~~~~r~vDl~~~~ 1939 (2582)
T TIGR02813 1889 -GGFGYSNGDADSGTQQVKAELNQAALAGLTKTLNHEWNAVFCRALDLAPKL 1939 (2582)
T ss_pred -CccccCCccccccccccccchhhhhHHHHHHhHHHHCCCCeEEEEeCCCCc
Confidence 33333221111 23578999999999999988778888887753
|
Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD. |
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.0073 Score=61.05 Aligned_cols=48 Identities=17% Similarity=0.289 Sum_probs=42.4
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEEcChhhHHHHHHHHH
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSG-DRVVVASRSSESVRMTVTELE 222 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~G-a~Vvl~~R~~~~l~~~~~el~ 222 (512)
++++|+++|+|+ ||+|++++..|++.| .+|++++|+.++++++.+++.
T Consensus 120 ~~~~k~vlVlGa-Gg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~ 168 (278)
T PRK00258 120 DLKGKRILILGA-GGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFG 168 (278)
T ss_pred CCCCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhh
Confidence 578899999997 899999999999999 699999999988877766653
|
|
| >cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.0084 Score=60.80 Aligned_cols=80 Identities=20% Similarity=0.304 Sum_probs=56.7
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCCh
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEP 255 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~ 255 (512)
.+++++|+|+++++|.++++.+...|++|+++++++++.+.+ .++ +.. ...|..+.
T Consensus 166 ~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~~~~~-~~~--------------------~~~---~~~~~~~~ 221 (342)
T cd08266 166 PGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKLERA-KEL--------------------GAD---YVIDYRKE 221 (342)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HHc--------------------CCC---eEEecCCh
Confidence 578999999999999999999999999999999987765432 111 111 12366665
Q ss_pred hhHHHHHHHHHHHcCCCccccccccc
Q 010380 256 ADVQKLSNFAVNEFGSIDIWINNAGT 281 (512)
Q Consensus 256 ~sv~~~~~~i~~~~g~IDvLInnAG~ 281 (512)
+..+.+.+... ...+|++++++|.
T Consensus 222 ~~~~~~~~~~~--~~~~d~~i~~~g~ 245 (342)
T cd08266 222 DFVREVRELTG--KRGVDVVVEHVGA 245 (342)
T ss_pred HHHHHHHHHhC--CCCCcEEEECCcH
Confidence 55555544332 1369999999883
|
This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone |
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.0083 Score=62.03 Aligned_cols=151 Identities=13% Similarity=0.110 Sum_probs=95.9
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-------EEEEEEcChhh--HHHHHHHHHHHHhhhhhhcCCCCcccccCceEEE
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSGD-------RVVVASRSSES--VRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAG 247 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~Ga-------~Vvl~~R~~~~--l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~ 247 (512)
++.|.|+|++|.+|..+|..|+..|. .+++.+.+++. ++..+.++..... . ...++..
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~------------~-~~~~~~i 68 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAF------------P-LLAEIVI 68 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccc------------c-ccCceEE
Confidence 56789999999999999999998884 69999995433 4444444433100 0 0011111
Q ss_pred EEccCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCC-CCCe
Q 010380 248 IACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQP-KGGH 326 (512)
Q Consensus 248 v~~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~-~~g~ 326 (512)
. -.+ .+.+..-|++|.+||... .+ ..+. .+.++.|+ -+.+.+.+.+.+.. ..+.
T Consensus 69 ~---~~~-----------~~~~~daDivvitaG~~~--k~--g~tR---~dll~~N~----~i~~~i~~~i~~~~~~~~i 123 (322)
T cd01338 69 T---DDP-----------NVAFKDADWALLVGAKPR--GP--GMER---ADLLKANG----KIFTAQGKALNDVASRDVK 123 (322)
T ss_pred e---cCc-----------HHHhCCCCEEEEeCCCCC--CC--CCcH---HHHHHHHH----HHHHHHHHHHHhhCCCCeE
Confidence 1 011 122346899999999853 22 2333 33455554 45666677777665 3677
Q ss_pred EEeecCCC-------CCCC-CCCCcchhhHHHHHHHHHHHHHHHHhC
Q 010380 327 IFNMDGAG-------SGGS-STPLTAVYGSTKCGLRQLQASLFKESK 365 (512)
Q Consensus 327 IV~vSS~~-------a~~~-~~p~~~~Y~aSKaAl~~l~~sLa~El~ 365 (512)
++++|-.. .-.. +.|....|+.++.--..|...+++.+.
T Consensus 124 iivvsNPvD~~t~~~~k~sg~~p~~~ViG~t~LDs~Rl~~~la~~lg 170 (322)
T cd01338 124 VLVVGNPCNTNALIAMKNAPDIPPDNFTAMTRLDHNRAKSQLAKKAG 170 (322)
T ss_pred EEEecCcHHHHHHHHHHHcCCCChHheEEehHHHHHHHHHHHHHHhC
Confidence 77776421 1123 256677899999999999999999985
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.0069 Score=66.83 Aligned_cols=47 Identities=32% Similarity=0.394 Sum_probs=41.0
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHH
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTE 220 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~e 220 (512)
.++++|+++|+|+ ||+|++++..|++.|++|++++|+.++++++.++
T Consensus 375 ~~~~~k~vlIlGa-GGagrAia~~L~~~G~~V~i~nR~~e~a~~la~~ 421 (529)
T PLN02520 375 SPLAGKLFVVIGA-GGAGKALAYGAKEKGARVVIANRTYERAKELADA 421 (529)
T ss_pred cCCCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHH
Confidence 4578999999999 6999999999999999999999998877665544
|
|
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.017 Score=59.75 Aligned_cols=114 Identities=17% Similarity=0.169 Sum_probs=71.1
Q ss_pred EEEEECCCChHHHHHHHHHHHCCC-------EEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEcc
Q 010380 179 NVVITGSTRGLGKALAREFLLSGD-------RVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACD 251 (512)
Q Consensus 179 ~vLVTGassGIG~aiA~~La~~Ga-------~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~D 251 (512)
+|.|+|++|.+|..++..|+..|. .+++++++++.- .......|
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~-----------------------------~a~g~~~D 51 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMK-----------------------------VLEGVVME 51 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCccc-----------------------------ccceeEee
Confidence 378999999999999999998663 599999865420 12224455
Q ss_pred CCChhhHH--HH--HHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-CCCCe
Q 010380 252 VCEPADVQ--KL--SNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQ-PKGGH 326 (512)
Q Consensus 252 ltd~~sv~--~~--~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~-~~~g~ 326 (512)
+.|..... .. .....+.+...|++|+.||... . . .+.+.+.+..|+. +.+.+.+.+.+. +..+.
T Consensus 52 l~d~~~~~~~~~~~~~~~~~~~~~aDiVVitAG~~~--~--~---~~tr~~ll~~N~~----i~k~i~~~i~~~~~~~~i 120 (324)
T TIGR01758 52 LMDCAFPLLDGVVPTHDPAVAFTDVDVAILVGAFPR--K--E---GMERRDLLSKNVK----IFKEQGRALDKLAKKDCK 120 (324)
T ss_pred hhcccchhcCceeccCChHHHhCCCCEEEEcCCCCC--C--C---CCcHHHHHHHHHH----HHHHHHHHHHhhCCCCeE
Confidence 55544110 00 0011234457999999999854 1 1 1235666776754 556666666665 25577
Q ss_pred EEeecC
Q 010380 327 IFNMDG 332 (512)
Q Consensus 327 IV~vSS 332 (512)
|+++|.
T Consensus 121 iivvsN 126 (324)
T TIGR01758 121 VLVVGN 126 (324)
T ss_pred EEEeCC
Confidence 777753
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.021 Score=59.11 Aligned_cols=111 Identities=13% Similarity=0.142 Sum_probs=69.0
Q ss_pred EEEEECCCChHHHHHHHHHHHCCC-------EEEEEEcCh--hhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEE
Q 010380 179 NVVITGSTRGLGKALAREFLLSGD-------RVVVASRSS--ESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIA 249 (512)
Q Consensus 179 ~vLVTGassGIG~aiA~~La~~Ga-------~Vvl~~R~~--~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~ 249 (512)
.|.||||+|.+|..++..|+..|. .+++.++++ +.++. ..
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g-------------------------------~~ 50 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEG-------------------------------VV 50 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccce-------------------------------ee
Confidence 479999999999999999998773 499999986 43322 33
Q ss_pred ccCCChhhH--H--HHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCC-CC
Q 010380 250 CDVCEPADV--Q--KLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQP-KG 324 (512)
Q Consensus 250 ~Dltd~~sv--~--~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~-~~ 324 (512)
.|+.|.... . .+.....+.+...|++|+.||... .+ ..+. ...+..|. -+.+.+.+.+.+.. ..
T Consensus 51 ~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiVVitAG~~~--~~--g~tR---~dll~~N~----~i~~~i~~~i~~~~~~~ 119 (323)
T cd00704 51 MELQDCAFPLLKGVVITTDPEEAFKDVDVAILVGAFPR--KP--GMER---ADLLRKNA----KIFKEQGEALNKVAKPT 119 (323)
T ss_pred eehhhhcccccCCcEEecChHHHhCCCCEEEEeCCCCC--Cc--CCcH---HHHHHHhH----HHHHHHHHHHHHhCCCC
Confidence 344443100 0 000112234457999999999854 21 2233 34555554 45666777777763 56
Q ss_pred CeEEeec
Q 010380 325 GHIFNMD 331 (512)
Q Consensus 325 g~IV~vS 331 (512)
+.++++|
T Consensus 120 ~iiivvs 126 (323)
T cd00704 120 VKVLVVG 126 (323)
T ss_pred eEEEEeC
Confidence 6777764
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.011 Score=60.83 Aligned_cols=42 Identities=21% Similarity=0.284 Sum_probs=37.0
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHH
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMT 217 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~ 217 (512)
.|++++|+||++++|..+++.+...|++|+.+++++++.+.+
T Consensus 151 ~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~ 192 (338)
T cd08295 151 KGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLL 192 (338)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 578999999999999999998888999999999988776544
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.0042 Score=59.78 Aligned_cols=47 Identities=23% Similarity=0.334 Sum_probs=40.3
Q ss_pred cCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHH
Q 010380 172 HCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVT 219 (512)
Q Consensus 172 ~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~ 219 (512)
..+++||+++|+|.. .+|..+|+.|.+.|++|++.+++++++++..+
T Consensus 23 ~~~l~gk~v~I~G~G-~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~ 69 (200)
T cd01075 23 TDSLEGKTVAVQGLG-KVGYKLAEHLLEEGAKLIVADINEEAVARAAE 69 (200)
T ss_pred CCCCCCCEEEEECCC-HHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence 357899999999985 89999999999999999999999876655443
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.01 Score=61.05 Aligned_cols=35 Identities=23% Similarity=0.336 Sum_probs=28.2
Q ss_pred CEEEEECCCChHHHHHHHHHHH-C--CCEEEEEEcChh
Q 010380 178 RNVVITGSTRGLGKALAREFLL-S--GDRVVVASRSSE 212 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~-~--Ga~Vvl~~R~~~ 212 (512)
+.++|.||+|++|.+++..|.. . +..+++.+|++.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~ 38 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPV 38 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCC
Confidence 3689999999999999998865 3 357888888743
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.081 Score=57.96 Aligned_cols=43 Identities=21% Similarity=0.142 Sum_probs=37.3
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHH
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMT 217 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~ 217 (512)
...+.+|+|+|+ |.+|+..+..+...|++|+++++++++++.+
T Consensus 162 ~~pg~kVlViGa-G~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~a 204 (509)
T PRK09424 162 KVPPAKVLVIGA-GVAGLAAIGAAGSLGAIVRAFDTRPEVAEQV 204 (509)
T ss_pred CcCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 356899999997 6899999999999999999999998876543
|
|
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.023 Score=58.90 Aligned_cols=39 Identities=28% Similarity=0.371 Sum_probs=33.7
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHH
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVR 215 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~ 215 (512)
|+++||+||+||+|...++.....|++++++..+.++.+
T Consensus 143 g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~ 181 (326)
T COG0604 143 GETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLE 181 (326)
T ss_pred CCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHH
Confidence 899999999999999999999999987777776666554
|
|
| >cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.013 Score=59.39 Aligned_cols=41 Identities=27% Similarity=0.426 Sum_probs=36.2
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHH
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRM 216 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~ 216 (512)
.+++++|+|+++++|.++++.+...|++|+.+.+++++.+.
T Consensus 162 ~~~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~~~~~~~~ 202 (332)
T cd08259 162 KGDTVLVTGAGGGVGIHAIQLAKALGARVIAVTRSPEKLKI 202 (332)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHH
Confidence 46889999999999999999999999999999988765443
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. |
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.025 Score=58.85 Aligned_cols=84 Identities=20% Similarity=0.331 Sum_probs=58.1
Q ss_pred cCCCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcCh---------------------hhHHHHHHHHHHHHhhhh
Q 010380 172 HCKAGPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRSS---------------------ESVRMTVTELEENLKEGM 229 (512)
Q Consensus 172 ~~~l~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~---------------------~~l~~~~~el~~~~~~~~ 229 (512)
..++++++|+|.|+ ||+|..+|+.|++.|. ++.+++++. .+++.+.+.+.+..
T Consensus 19 Q~~L~~~~VlIiG~-GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~in---- 93 (338)
T PRK12475 19 QRKIREKHVLIVGA-GALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKIN---- 93 (338)
T ss_pred HHhhcCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHC----
Confidence 45678899999997 7899999999999997 899999973 24445555555432
Q ss_pred hhcCCCCcccccCceEEEEEccCCChhhHHHHHHHHHHHcCCCccccccc
Q 010380 230 MAAGGSSKKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNA 279 (512)
Q Consensus 230 ~~~g~~~~~~~~g~~v~~v~~Dltd~~sv~~~~~~i~~~~g~IDvLInnA 279 (512)
...++..+..|++. +.+++++ ...|++|.+.
T Consensus 94 -----------p~v~i~~~~~~~~~-~~~~~~~-------~~~DlVid~~ 124 (338)
T PRK12475 94 -----------SEVEIVPVVTDVTV-EELEELV-------KEVDLIIDAT 124 (338)
T ss_pred -----------CCcEEEEEeccCCH-HHHHHHh-------cCCCEEEEcC
Confidence 23567777777753 2333332 3567777665
|
|
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.13 Score=53.09 Aligned_cols=118 Identities=17% Similarity=0.200 Sum_probs=77.6
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 175 AGPRNVVITGSTRGLGKALAREFLLSGD--RVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 175 l~gk~vLVTGassGIG~aiA~~La~~Ga--~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
-.++.|.|+|+ |++|..+|..|+..|. ++++.+++++.++....++.+..+. . .++....
T Consensus 4 ~~~~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~-------------~-~~~~i~~--- 65 (315)
T PRK00066 4 KQHNKVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPF-------------T-SPTKIYA--- 65 (315)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccc-------------c-CCeEEEe---
Confidence 35678999998 9999999999999995 7999999999888888888763210 1 1222221
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
.+.+ .+..-|++|..||... .+ ..+. ...++.|.- +.+.+.+.+.+....+.+++++-
T Consensus 66 ~~~~-----------~~~~adivIitag~~~--k~--g~~R---~dll~~N~~----i~~~i~~~i~~~~~~~~vivvsN 123 (315)
T PRK00066 66 GDYS-----------DCKDADLVVITAGAPQ--KP--GETR---LDLVEKNLK----IFKSIVGEVMASGFDGIFLVASN 123 (315)
T ss_pred CCHH-----------HhCCCCEEEEecCCCC--CC--CCCH---HHHHHHHHH----HHHHHHHHHHHhCCCeEEEEccC
Confidence 1211 1236899999999854 21 2333 234555543 44555666666555677777753
|
|
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.042 Score=55.77 Aligned_cols=49 Identities=27% Similarity=0.340 Sum_probs=43.1
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcChhhHHHHHHHHHH
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRSSESVRMTVTELEE 223 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~~~l~~~~~el~~ 223 (512)
++++|+++|.|+ ||.|++++..|++.|+ +|++++|+.++.+.+.+++.+
T Consensus 124 ~~~~k~vlIlGa-GGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~ 173 (284)
T PRK12549 124 DASLERVVQLGA-GGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNA 173 (284)
T ss_pred CccCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHh
Confidence 467899999997 7899999999999997 899999999998888777754
|
|
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.015 Score=60.53 Aligned_cols=42 Identities=21% Similarity=0.278 Sum_probs=36.7
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHH
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMT 217 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~ 217 (512)
.|++++|+|+++++|..+++.+...|++|+.+++++++.+.+
T Consensus 158 ~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~ 199 (348)
T PLN03154 158 KGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLL 199 (348)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHH
Confidence 578999999999999999988888999999998888775543
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.056 Score=56.98 Aligned_cols=78 Identities=17% Similarity=0.192 Sum_probs=54.2
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
.+.++.++|.|+ |.+|+.+++.+...|++|++++|+.++++.+...+ +.. +..+..
T Consensus 164 ~l~~~~VlViGa-G~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~--------------------g~~---v~~~~~ 219 (370)
T TIGR00518 164 GVEPGDVTIIGG-GVVGTNAAKMANGLGATVTILDINIDRLRQLDAEF--------------------GGR---IHTRYS 219 (370)
T ss_pred CCCCceEEEEcC-CHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhc--------------------Cce---eEeccC
Confidence 356777999987 79999999999999999999999987765433221 111 223444
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTN 282 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~ 282 (512)
+.+.+.+.+ ...|++|+++++.
T Consensus 220 ~~~~l~~~l-------~~aDvVI~a~~~~ 241 (370)
T TIGR00518 220 NAYEIEDAV-------KRADLLIGAVLIP 241 (370)
T ss_pred CHHHHHHHH-------ccCCEEEEccccC
Confidence 544443332 3579999998763
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.02 Score=57.15 Aligned_cols=41 Identities=27% Similarity=0.396 Sum_probs=36.5
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHH
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRM 216 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~ 216 (512)
.+++++|+|+++++|.++++.+...|++|++++++.++.+.
T Consensus 139 ~~~~vlv~g~~~~ig~~~~~~~~~~g~~v~~~~~~~~~~~~ 179 (323)
T cd05276 139 AGETVLIHGGASGVGTAAIQLAKALGARVIATAGSEEKLEA 179 (323)
T ss_pred CCCEEEEEcCcChHHHHHHHHHHHcCCEEEEEcCCHHHHHH
Confidence 57899999999999999999999999999999998766543
|
PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding |
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.018 Score=58.94 Aligned_cols=42 Identities=26% Similarity=0.362 Sum_probs=36.5
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHH
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMT 217 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~ 217 (512)
.|.+++|+|+++++|..+++.+...|++|+.+++++++.+.+
T Consensus 138 ~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~ 179 (325)
T TIGR02825 138 GGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYL 179 (325)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 578999999999999999988888999999999987765433
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >PRK14027 quinate/shikimate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.032 Score=56.66 Aligned_cols=48 Identities=23% Similarity=0.343 Sum_probs=42.0
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcChhhHHHHHHHHH
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRSSESVRMTVTELE 222 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~~~l~~~~~el~ 222 (512)
+.++|+++|.|+ ||-+++++..|++.|+ +|+++.|+.++.+++.+.+.
T Consensus 124 ~~~~k~vlilGa-GGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~ 172 (283)
T PRK14027 124 NAKLDSVVQVGA-GGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVIN 172 (283)
T ss_pred CcCCCeEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHh
Confidence 456899999997 8999999999999997 79999999999888777654
|
|
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.024 Score=58.35 Aligned_cols=43 Identities=23% Similarity=0.267 Sum_probs=36.3
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcChhhHHHHHH
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSGD-RVVVASRSSESVRMTVT 219 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~~~l~~~~~ 219 (512)
+++++|+||++++|.++++.+...|+ +|+.+++++++.+.+.+
T Consensus 155 ~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~ 198 (345)
T cd08293 155 NQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKS 198 (345)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence 48999999999999999988888998 89999998877654433
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.072 Score=52.47 Aligned_cols=36 Identities=22% Similarity=0.295 Sum_probs=31.3
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRS 210 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~ 210 (512)
++++.+|+|.|+ ||+|.++++.|++.|. ++++++.+
T Consensus 8 ~L~~~~VlVvG~-GGvGs~va~~Lar~GVg~i~LvD~D 44 (231)
T cd00755 8 KLRNAHVAVVGL-GGVGSWAAEALARSGVGKLTLIDFD 44 (231)
T ss_pred HHhCCCEEEECC-CHHHHHHHHHHHHcCCCEEEEECCC
Confidence 456788899986 6999999999999997 89999876
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >COG3268 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.016 Score=59.09 Aligned_cols=77 Identities=22% Similarity=0.296 Sum_probs=60.6
Q ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhh
Q 010380 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPAD 257 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~s 257 (512)
..++|-||+|--|.-+|++|+++|.+-++.+||..++..+...|. .+...+.+++ ++.
T Consensus 7 ~d~iiYGAtGy~G~lvae~l~~~g~~~aLAgRs~~kl~~l~~~LG--------------------~~~~~~p~~~--p~~ 64 (382)
T COG3268 7 YDIIIYGATGYAGGLVAEYLAREGLTAALAGRSSAKLDALRASLG--------------------PEAAVFPLGV--PAA 64 (382)
T ss_pred eeEEEEccccchhHHHHHHHHHcCCchhhccCCHHHHHHHHHhcC--------------------ccccccCCCC--HHH
Confidence 457999999999999999999999999999999999988777653 3344455554 555
Q ss_pred HHHHHHHHHHHcCCCcccccccccCC
Q 010380 258 VQKLSNFAVNEFGSIDIWINNAGTNK 283 (512)
Q Consensus 258 v~~~~~~i~~~~g~IDvLInnAG~~~ 283 (512)
++++++ +.++|+||+|-..
T Consensus 65 ~~~~~~-------~~~VVlncvGPyt 83 (382)
T COG3268 65 LEAMAS-------RTQVVLNCVGPYT 83 (382)
T ss_pred HHHHHh-------cceEEEecccccc
Confidence 554444 6899999999754
|
|
| >PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.036 Score=60.06 Aligned_cols=81 Identities=21% Similarity=0.188 Sum_probs=55.9
Q ss_pred CCCCCEEEEECC----------------CChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCc
Q 010380 174 KAGPRNVVITGS----------------TRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237 (512)
Q Consensus 174 ~l~gk~vLVTGa----------------ssGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~ 237 (512)
+++||.||||+| ||-+|.++|++++.+|++|++++-... +.
T Consensus 253 ~l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~~-~~---------------------- 309 (475)
T PRK13982 253 PLAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPVD-LA---------------------- 309 (475)
T ss_pred ccCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCcC-CC----------------------
Confidence 589999999996 457999999999999999999874321 00
Q ss_pred ccccCceEEEEEccCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCC
Q 010380 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKP 287 (512)
Q Consensus 238 ~~~~g~~v~~v~~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~ 287 (512)
....+..+. +. +.+++.+.+.+.+. .|++|++|.+.+ +.+
T Consensus 310 ---~p~~v~~i~--V~---ta~eM~~av~~~~~-~Di~I~aAAVaD-yrp 349 (475)
T PRK13982 310 ---DPQGVKVIH--VE---SARQMLAAVEAALP-ADIAIFAAAVAD-WRV 349 (475)
T ss_pred ---CCCCceEEE--ec---CHHHHHHHHHhhCC-CCEEEEeccccc-eee
Confidence 112233333 33 34455555555554 699999999976 444
|
|
| >COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.039 Score=55.92 Aligned_cols=50 Identities=24% Similarity=0.360 Sum_probs=43.9
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcChhhHHHHHHHHHH
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRSSESVRMTVTELEE 223 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~~~l~~~~~el~~ 223 (512)
.+.+++.++|.|| ||-+++++..|++.|+ +|+++.|+.++++++.+.+.+
T Consensus 122 ~~~~~~~vlilGA-GGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~ 172 (283)
T COG0169 122 VDVTGKRVLILGA-GGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGE 172 (283)
T ss_pred cccCCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhh
Confidence 3457899999996 7999999999999995 899999999999888887765
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.059 Score=51.89 Aligned_cols=38 Identities=24% Similarity=0.318 Sum_probs=33.7
Q ss_pred cCCCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcC
Q 010380 172 HCKAGPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRS 210 (512)
Q Consensus 172 ~~~l~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~ 210 (512)
..++.+++|+|.| .||+|.++|+.|+..|. ++.+++.+
T Consensus 16 q~kl~~~~VlviG-~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 16 QQRLLNSHVLIIG-AGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred HHHhcCCCEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 4467889999999 57999999999999997 89999987
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.04 Score=58.94 Aligned_cols=46 Identities=22% Similarity=0.360 Sum_probs=40.1
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcChhhHHHHHHH
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRSSESVRMTVTE 220 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~~~l~~~~~e 220 (512)
++.+|+++|.|+ ||+|+.+++.|+++|+ +|+++.|+.++++.+.++
T Consensus 178 ~l~~kkvlviGa-G~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~ 224 (414)
T PRK13940 178 NISSKNVLIIGA-GQTGELLFRHVTALAPKQIMLANRTIEKAQKITSA 224 (414)
T ss_pred CccCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHH
Confidence 578899999998 9999999999999996 799999998877665554
|
|
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.041 Score=53.68 Aligned_cols=40 Identities=28% Similarity=0.376 Sum_probs=35.0
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHH
Q 010380 175 AGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVR 215 (512)
Q Consensus 175 l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~ 215 (512)
..+++++|+|+++ +|.++++.+...|.+|+++++++++.+
T Consensus 133 ~~~~~vli~g~~~-~G~~~~~~a~~~g~~v~~~~~~~~~~~ 172 (271)
T cd05188 133 KPGDTVLVLGAGG-VGLLAAQLAKAAGARVIVTDRSDEKLE 172 (271)
T ss_pred CCCCEEEEECCCH-HHHHHHHHHHHcCCeEEEEcCCHHHHH
Confidence 3578999999988 999999999999999999999876544
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.24 Score=49.88 Aligned_cols=37 Identities=14% Similarity=0.204 Sum_probs=32.0
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRS 210 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~ 210 (512)
..+.+.+|+|.|+ ||+|.++|+.|++.|. ++.+++.+
T Consensus 26 ~kL~~s~VlVvG~-GGVGs~vae~Lar~GVg~itLiD~D 63 (268)
T PRK15116 26 QLFADAHICVVGI-GGVGSWAAEALARTGIGAITLIDMD 63 (268)
T ss_pred HHhcCCCEEEECc-CHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 3577888999986 6999999999999994 89999876
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.2 Score=46.73 Aligned_cols=123 Identities=19% Similarity=0.179 Sum_probs=71.1
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCCh
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEP 255 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~ 255 (512)
+++++|-.|+..|. ++..+++++.+|+.++++++.++.+.+.+..... ....+.++.+|+.+.
T Consensus 23 ~~~~vLd~G~G~G~---~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~--------------~~~~~~~~~~d~~~~ 85 (188)
T PRK14968 23 KGDRVLEVGTGSGI---VAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNI--------------RNNGVEVIRSDLFEP 85 (188)
T ss_pred CCCEEEEEccccCH---HHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCC--------------CCcceEEEecccccc
Confidence 56788999987776 5666666789999999998877766655543100 111277788887542
Q ss_pred hhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHH---HHHHHHHHHHHhCCCCCeEEeec
Q 010380 256 ADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSI---LCTREAMRVMRDQPKGGHIFNMD 331 (512)
Q Consensus 256 ~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~---~l~k~~lp~m~~~~~~g~IV~vS 331 (512)
+.+ ..+|.++.|..... ..+.... .+.+...+..+..+.. .+.+.+.+.|+. +|.++++.
T Consensus 86 ---------~~~--~~~d~vi~n~p~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~---gG~~~~~~ 148 (188)
T PRK14968 86 ---------FRG--DKFDVILFNPPYLP-TEEEEEW-DDWLNYALSGGKDGREVIDRFLDEVGRYLKP---GGRILLLQ 148 (188)
T ss_pred ---------ccc--cCceEEEECCCcCC-CCchhhh-hhhhhhhhccCcChHHHHHHHHHHHHHhcCC---CeEEEEEE
Confidence 111 26899999887643 2222221 2223333333323222 245566666653 46665553
|
|
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.074 Score=55.41 Aligned_cols=39 Identities=28% Similarity=0.423 Sum_probs=34.6
Q ss_pred cCCCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcCh
Q 010380 172 HCKAGPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRSS 211 (512)
Q Consensus 172 ~~~l~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~ 211 (512)
..++..++|+|.|+ ||+|..+|+.|++.|. +|.+++.+.
T Consensus 19 Q~~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 19 QQKLREKHVLIIGA-GALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred HHHhcCCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 44678889999998 8999999999999998 899999873
|
|
| >PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.026 Score=45.38 Aligned_cols=35 Identities=26% Similarity=0.393 Sum_probs=23.1
Q ss_pred CCCEEEEECCCChHHHHHHHHHH-HCCCEEEEEEcC
Q 010380 176 GPRNVVITGSTRGLGKALAREFL-LSGDRVVVASRS 210 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La-~~Ga~Vvl~~R~ 210 (512)
.+|+|||+|+|+|.|++..-.++ ..|++.+-++..
T Consensus 38 GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~fE 73 (78)
T PF12242_consen 38 GPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSFE 73 (78)
T ss_dssp S-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE--
T ss_pred CCceEEEEecCCcccHHHHHHHHhcCCCCEEEEeec
Confidence 35999999999999999444444 678888877764
|
|
| >TIGR00715 precor6x_red precorrin-6x reductase | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.032 Score=55.84 Aligned_cols=74 Identities=19% Similarity=0.349 Sum_probs=53.0
Q ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhhH
Q 010380 179 NVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPADV 258 (512)
Q Consensus 179 ~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~sv 258 (512)
.++|+|||+- |+.+++.|.++|++|+...+++...+... ......+..|..|.+++
T Consensus 2 ~ILvlGGT~e-gr~la~~L~~~g~~v~~s~~t~~~~~~~~-----------------------~~g~~~v~~g~l~~~~l 57 (256)
T TIGR00715 2 TVLLMGGTVD-SRAIAKGLIAQGIEILVTVTTSEGKHLYP-----------------------IHQALTVHTGALDPQEL 57 (256)
T ss_pred eEEEEechHH-HHHHHHHHHhCCCeEEEEEccCCcccccc-----------------------ccCCceEEECCCCHHHH
Confidence 5899999997 99999999999999999998876432211 01122345666777776
Q ss_pred HHHHHHHHHHcCCCccccccccc
Q 010380 259 QKLSNFAVNEFGSIDIWINNAGT 281 (512)
Q Consensus 259 ~~~~~~i~~~~g~IDvLInnAG~ 281 (512)
.+++.+ .++|+||+.+.-
T Consensus 58 ~~~l~~-----~~i~~VIDAtHP 75 (256)
T TIGR00715 58 REFLKR-----HSIDILVDATHP 75 (256)
T ss_pred HHHHHh-----cCCCEEEEcCCH
Confidence 666543 279999987764
|
This enzyme was found to be a monomer by gel filtration. |
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.58 Score=47.83 Aligned_cols=41 Identities=29% Similarity=0.353 Sum_probs=36.4
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhH
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESV 214 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l 214 (512)
..+.+++++|.|. |++|+.+++.|...|++|++++|+.++.
T Consensus 148 ~~l~g~kvlViG~-G~iG~~~a~~L~~~Ga~V~v~~r~~~~~ 188 (296)
T PRK08306 148 ITIHGSNVLVLGF-GRTGMTLARTLKALGANVTVGARKSAHL 188 (296)
T ss_pred CCCCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHHH
Confidence 4567999999997 7899999999999999999999997653
|
|
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.21 Score=51.34 Aligned_cols=118 Identities=16% Similarity=0.211 Sum_probs=68.1
Q ss_pred EEEEECCCChHHHHHHHHHHHCCC--EEEEEEcCh--hhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCC
Q 010380 179 NVVITGSTRGLGKALAREFLLSGD--RVVVASRSS--ESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCE 254 (512)
Q Consensus 179 ~vLVTGassGIG~aiA~~La~~Ga--~Vvl~~R~~--~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd 254 (512)
++.|+|++|.+|..++..|+..|. .|++++|++ ++++....++.+.... .+.... ...++
T Consensus 2 kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~-------------~~~~~~---i~~~~ 65 (309)
T cd05294 2 KVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAA-------------AGIDAE---IKISS 65 (309)
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhc-------------cCCCcE---EEECC
Confidence 579999999999999999999985 599999965 5554444444331110 111111 11111
Q ss_pred hhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 255 PADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 255 ~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
+.+ ....-|++|.++|... . ...+. ...++.|+.- .+.+.+.+.+....+.+|++++.
T Consensus 66 --d~~--------~l~~aDiViitag~p~--~--~~~~r---~dl~~~n~~i----~~~~~~~i~~~~~~~~viv~~np 123 (309)
T cd05294 66 --DLS--------DVAGSDIVIITAGVPR--K--EGMSR---LDLAKKNAKI----VKKYAKQIAEFAPDTKILVVTNP 123 (309)
T ss_pred --CHH--------HhCCCCEEEEecCCCC--C--CCCCH---HHHHHHHHHH----HHHHHHHHHHHCCCeEEEEeCCc
Confidence 111 1236899999999743 1 22332 2344445443 34444444444345677777653
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.072 Score=56.26 Aligned_cols=37 Identities=19% Similarity=0.268 Sum_probs=32.3
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRS 210 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~ 210 (512)
.++.+++|+|.|+ ||+|.++++.|+..|. ++.+++++
T Consensus 131 ~~l~~~~VlvvG~-GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 131 RRLLEARVLLIGA-GGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred HHHhcCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 4567788888865 8999999999999998 89999997
|
|
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.086 Score=53.68 Aligned_cols=48 Identities=15% Similarity=0.229 Sum_probs=38.9
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcChh---hHHHHHHHH
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRSSE---SVRMTVTEL 221 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~~---~l~~~~~el 221 (512)
.++++|+++|.|+ ||-+++++..|+..|+ +|+++.|+.+ +++++.+++
T Consensus 120 ~~~~~k~vlvlGa-GGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~ 171 (288)
T PRK12749 120 FDIKGKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRV 171 (288)
T ss_pred CCcCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHh
Confidence 4578899999997 7779999999999996 8999999954 555555544
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.064 Score=55.57 Aligned_cols=42 Identities=24% Similarity=0.374 Sum_probs=36.9
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHH
Q 010380 175 AGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMT 217 (512)
Q Consensus 175 l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~ 217 (512)
-.|++++|+|+. |+|...++.....|++|+.++|++++++.+
T Consensus 165 ~pG~~V~I~G~G-GlGh~avQ~Aka~ga~Via~~~~~~K~e~a 206 (339)
T COG1064 165 KPGKWVAVVGAG-GLGHMAVQYAKAMGAEVIAITRSEEKLELA 206 (339)
T ss_pred CCCCEEEEECCc-HHHHHHHHHHHHcCCeEEEEeCChHHHHHH
Confidence 358999999998 999988888888999999999999987644
|
|
| >KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.051 Score=56.80 Aligned_cols=81 Identities=21% Similarity=0.301 Sum_probs=54.4
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCC
Q 010380 175 AGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCE 254 (512)
Q Consensus 175 l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd 254 (512)
-+|+.+||.||++|+|.+.++-....|+..+++.++.++.+ +.+++ |.. ...|..+
T Consensus 156 ~~g~~vLv~ggsggVG~~aiQlAk~~~~~~v~t~~s~e~~~-l~k~l--------------------GAd---~vvdy~~ 211 (347)
T KOG1198|consen 156 SKGKSVLVLGGSGGVGTAAIQLAKHAGAIKVVTACSKEKLE-LVKKL--------------------GAD---EVVDYKD 211 (347)
T ss_pred CCCCeEEEEeCCcHHHHHHHHHHHhcCCcEEEEEcccchHH-HHHHc--------------------CCc---EeecCCC
Confidence 45789999999999999999999899965555666655543 22322 111 3457777
Q ss_pred hhhHHHHHHHHHHHcCCCcccccccccC
Q 010380 255 PADVQKLSNFAVNEFGSIDIWINNAGTN 282 (512)
Q Consensus 255 ~~sv~~~~~~i~~~~g~IDvLInnAG~~ 282 (512)
++-++...+.. .+++|+++-|.|..
T Consensus 212 ~~~~e~~kk~~---~~~~DvVlD~vg~~ 236 (347)
T KOG1198|consen 212 ENVVELIKKYT---GKGVDVVLDCVGGS 236 (347)
T ss_pred HHHHHHHHhhc---CCCccEEEECCCCC
Confidence 44433332221 56899999999964
|
|
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.13 Score=51.02 Aligned_cols=38 Identities=21% Similarity=0.283 Sum_probs=33.5
Q ss_pred cCCCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcC
Q 010380 172 HCKAGPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRS 210 (512)
Q Consensus 172 ~~~l~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~ 210 (512)
..++++++|+|.|+ ||+|.++++.|+..|. ++.+++.+
T Consensus 27 Q~~L~~~~VliiG~-GglGs~va~~La~~Gvg~i~lvD~D 65 (245)
T PRK05690 27 QEKLKAARVLVVGL-GGLGCAASQYLAAAGVGTLTLVDFD 65 (245)
T ss_pred HHHhcCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 34678899999998 9999999999999997 89898876
|
|
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.1 Score=50.67 Aligned_cols=40 Identities=25% Similarity=0.253 Sum_probs=34.3
Q ss_pred cccCCCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcC
Q 010380 170 EEHCKAGPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRS 210 (512)
Q Consensus 170 ~~~~~l~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~ 210 (512)
+...+++.++|+|.|+ ||+|..+|+.|++.|. ++++++.+
T Consensus 21 ~~q~~L~~~~V~ViG~-GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 21 KLLEKLKKAKVGIAGA-GGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred HHHHHHhCCCEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 3345678889999996 8999999999999997 69999987
|
|
| >TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.058 Score=54.10 Aligned_cols=40 Identities=25% Similarity=0.352 Sum_probs=35.9
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHH
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVR 215 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~ 215 (512)
.+++++|+|+++++|.++++.+...|++|+++.+++++.+
T Consensus 139 ~~~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~ 178 (325)
T TIGR02824 139 AGETVLIHGGASGIGTTAIQLAKAFGARVFTTAGSDEKCA 178 (325)
T ss_pred CCCEEEEEcCcchHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 5789999999999999999999999999999999877654
|
Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized. |
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.13 Score=53.20 Aligned_cols=119 Identities=15% Similarity=0.202 Sum_probs=72.1
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCC
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSG-DRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCE 254 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~G-a~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd 254 (512)
+.+.|.|.|| |.+|..++..++..| +.|++.+++++.++...-++..... ..+.... +.+ -+|
T Consensus 4 ~~~KI~IIGa-G~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~-------------~~~~~~~-i~~-~~d 67 (319)
T PTZ00117 4 KRKKISMIGA-GQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFST-------------LVGSNIN-ILG-TNN 67 (319)
T ss_pred CCcEEEEECC-CHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhcc-------------ccCCCeE-EEe-CCC
Confidence 4568899997 889999999999999 7899999998765533333322100 0111111 111 112
Q ss_pred hhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 255 PADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 255 ~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
.++ +..-|++|.++|... . ...+. ...+..|. -+.+.+.+.|.+....+.++++|-
T Consensus 68 ~~~-----------l~~ADiVVitag~~~--~--~g~~r---~dll~~n~----~i~~~i~~~i~~~~p~a~vivvsN 123 (319)
T PTZ00117 68 YED-----------IKDSDVVVITAGVQR--K--EEMTR---EDLLTING----KIMKSVAESVKKYCPNAFVICVTN 123 (319)
T ss_pred HHH-----------hCCCCEEEECCCCCC--C--CCCCH---HHHHHHHH----HHHHHHHHHHHHHCCCeEEEEecC
Confidence 221 125799999999754 1 12232 34555666 456677777776655666777754
|
|
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.22 Score=54.54 Aligned_cols=42 Identities=21% Similarity=0.143 Sum_probs=36.3
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHH
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRM 216 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~ 216 (512)
...+.+++|.|+ |.+|...+..+...|++|++++++.++++.
T Consensus 161 ~vp~akVlViGa-G~iGl~Aa~~ak~lGA~V~v~d~~~~rle~ 202 (511)
T TIGR00561 161 KVPPAKVLVIGA-GVAGLAAIGAANSLGAIVRAFDTRPEVKEQ 202 (511)
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 445789999996 899999999999999999999999886543
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.06 Score=58.73 Aligned_cols=46 Identities=20% Similarity=0.348 Sum_probs=39.8
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHH
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVT 219 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~ 219 (512)
.++++|+++|+|+ ||+|++++..|++.|++|++.+|+.++.++..+
T Consensus 328 ~~~~~k~vlIiGa-GgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~ 373 (477)
T PRK09310 328 IPLNNQHVAIVGA-GGAAKAIATTLARAGAELLIFNRTKAHAEALAS 373 (477)
T ss_pred CCcCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 4578899999996 799999999999999999999999877665544
|
|
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.17 Score=50.67 Aligned_cols=115 Identities=17% Similarity=0.235 Sum_probs=71.2
Q ss_pred EEEECCCChHHHHHHHHHHHCC----CEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCCh
Q 010380 180 VVITGSTRGLGKALAREFLLSG----DRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEP 255 (512)
Q Consensus 180 vLVTGassGIG~aiA~~La~~G----a~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~ 255 (512)
+.|.||+|.+|..++..|+..| .+|++.++++++++....++++.... . ...++. . ++
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~-----------~-~~~~i~--~---~~- 62 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEP-----------L-ADIKVS--I---TD- 62 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhh-----------c-cCcEEE--E---CC-
Confidence 4789998899999999999999 68999999998888877777653211 0 011111 1 11
Q ss_pred hhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeec
Q 010380 256 ADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD 331 (512)
Q Consensus 256 ~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vS 331 (512)
+.. +.+..-|++|..+|.... ...+. ...+..| .-+.+...+.+.+....+.++++|
T Consensus 63 -d~~-------~~~~~aDiVv~t~~~~~~----~g~~r---~~~~~~n----~~i~~~i~~~i~~~~p~a~~i~~t 119 (263)
T cd00650 63 -DPY-------EAFKDADVVIITAGVGRK----PGMGR---LDLLKRN----VPIVKEIGDNIEKYSPDAWIIVVS 119 (263)
T ss_pred -chH-------HHhCCCCEEEECCCCCCC----cCCCH---HHHHHHH----HHHHHHHHHHHHHHCCCeEEEEec
Confidence 111 122368999999997542 11221 1222223 334555666666655567777775
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.078 Score=54.82 Aligned_cols=40 Identities=20% Similarity=0.314 Sum_probs=34.3
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcChhhHHH
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRSSESVRM 216 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~~~l~~ 216 (512)
.+++++|+|+ |++|...++.+...|+ +|+++++++++++.
T Consensus 169 ~g~~VlV~G~-G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~ 209 (343)
T PRK09880 169 QGKRVFVSGV-GPIGCLIVAAVKTLGAAEIVCADVSPRSLSL 209 (343)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCcEEEEEeCCHHHHHH
Confidence 5889999986 8999999988888998 68889999877653
|
|
| >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.077 Score=53.93 Aligned_cols=41 Identities=20% Similarity=0.344 Sum_probs=36.2
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHH
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRM 216 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~ 216 (512)
.|.+++|+||++++|..+++.+...|++|+.+++++++.+.
T Consensus 143 ~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~ 183 (329)
T cd08294 143 AGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAW 183 (329)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 57899999999999999999888999999999988876543
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac |
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.16 Score=53.33 Aligned_cols=39 Identities=15% Similarity=0.210 Sum_probs=34.0
Q ss_pred cCCCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcCh
Q 010380 172 HCKAGPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRSS 211 (512)
Q Consensus 172 ~~~l~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~ 211 (512)
..++++++|+|.|+ ||+|.++++.|+..|. ++.+++.+.
T Consensus 23 q~~L~~~~VlivG~-GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 23 QQSLFDAKVAVIGA-GGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred HHHHhCCeEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 44678899999998 7999999999999997 899998863
|
|
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.68 Score=47.90 Aligned_cols=125 Identities=13% Similarity=0.121 Sum_probs=72.3
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 175 AGPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 175 l~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
++.+.|.|.|+ |.+|..+|..++..|. .|++++++++.++...-++..... ..+........ +
T Consensus 4 ~~~~KI~IIGa-G~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~-------------~~~~~~~I~~~--~ 67 (321)
T PTZ00082 4 IKRRKISLIGS-GNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNV-------------IAGSNSKVIGT--N 67 (321)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhh-------------ccCCCeEEEEC--C
Confidence 34568899995 8899999999999994 899999998865432222222100 01111111110 2
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
|.+ .+..-|++|++||.... ....+.+.+ -.+.+..|+ .+.+.+.+.+.+....+.++++|-
T Consensus 68 d~~-----------~l~~aDiVI~tag~~~~-~~~~~~~~~-r~~~l~~n~----~i~~~i~~~i~~~~p~a~~iv~sN 129 (321)
T PTZ00082 68 NYE-----------DIAGSDVVIVTAGLTKR-PGKSDKEWN-RDDLLPLNA----KIMDEVAEGIKKYCPNAFVIVITN 129 (321)
T ss_pred CHH-----------HhCCCCEEEECCCCCCC-CCCCcCCCC-HHHHHHHHH----HHHHHHHHHHHHHCCCeEEEEecC
Confidence 221 12367999999998541 111111111 134455554 456777777777655667777753
|
|
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.14 Score=49.21 Aligned_cols=41 Identities=22% Similarity=0.268 Sum_probs=35.2
Q ss_pred ccccCCCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcC
Q 010380 169 LEEHCKAGPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRS 210 (512)
Q Consensus 169 ~~~~~~l~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~ 210 (512)
.+...++..++|+|.|+ ||+|..+|..|++.|. +|++++++
T Consensus 13 ~~~q~~L~~~~V~IvG~-GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 13 PKIVQKLEQATVAICGL-GGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred HHHHHHHhCCcEEEECc-CHHHHHHHHHHHHcCCCEEEEECCC
Confidence 33344678889999998 7999999999999998 79999998
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.1 Score=56.07 Aligned_cols=46 Identities=22% Similarity=0.396 Sum_probs=39.4
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcChhhHHHHHHH
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRSSESVRMTVTE 220 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~~~l~~~~~e 220 (512)
++.+++++|.|+ |++|..+++.|...|+ +|++++|+.++++...++
T Consensus 179 ~~~~~~vlViGa-G~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~ 225 (423)
T PRK00045 179 DLSGKKVLVIGA-GEMGELVAKHLAEKGVRKITVANRTLERAEELAEE 225 (423)
T ss_pred CccCCEEEEECc-hHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHH
Confidence 478899999987 9999999999999997 899999998877655444
|
|
| >cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.087 Score=52.86 Aligned_cols=41 Identities=24% Similarity=0.297 Sum_probs=36.5
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHH
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRM 216 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~ 216 (512)
++++++|+|+++++|.++++.+...|++|++++++.++.+.
T Consensus 144 ~~~~vli~g~~~~~g~~~~~~~~~~g~~v~~~~~~~~~~~~ 184 (328)
T cd08268 144 PGDSVLITAASSSVGLAAIQIANAAGATVIATTRTSEKRDA 184 (328)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHH
Confidence 46899999999999999999999999999999998766543
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >cd05288 PGDH Prostaglandin dehydrogenases | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.11 Score=52.84 Aligned_cols=41 Identities=27% Similarity=0.342 Sum_probs=36.3
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHH
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRM 216 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~ 216 (512)
.+++++|.|+++++|.++++.+.+.|++|+.+.+++++.+.
T Consensus 145 ~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~~~~~~~~ 185 (329)
T cd05288 145 PGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAGSDEKCRW 185 (329)
T ss_pred CCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 47899999999999999999999999999999988776543
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino |
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.093 Score=53.23 Aligned_cols=48 Identities=15% Similarity=0.128 Sum_probs=41.5
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcChhhHHHHHHHHH
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRSSESVRMTVTELE 222 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~~~l~~~~~el~ 222 (512)
++++|+++|.|+ ||.|++++..|++.|+ +|+++.|+.++.+++.+++.
T Consensus 122 ~~~~k~vlvlGa-GGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~ 170 (282)
T TIGR01809 122 PLAGFRGLVIGA-GGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGV 170 (282)
T ss_pred ccCCceEEEEcC-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhh
Confidence 367899999986 8999999999999997 79999999998887776653
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.24 Score=44.17 Aligned_cols=80 Identities=20% Similarity=0.365 Sum_probs=53.0
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcC-------------------hhhHHHHHHHHHHHHhhhhhhcCCCC
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSGD-RVVVASRS-------------------SESVRMTVTELEENLKEGMMAAGGSS 236 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~-------------------~~~l~~~~~el~~~~~~~~~~~g~~~ 236 (512)
.++|+|.|+ ||+|.++++.|+..|. ++.+++.+ ..+.+.+.+.+.+..
T Consensus 2 ~~~v~iiG~-G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~n----------- 69 (135)
T PF00899_consen 2 NKRVLIIGA-GGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEIN----------- 69 (135)
T ss_dssp T-EEEEEST-SHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHS-----------
T ss_pred CCEEEEECc-CHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhc-----------
Confidence 467888886 7999999999999998 79999874 223444455554432
Q ss_pred cccccCceEEEEEccCCChhhHHHHHHHHHHHcCCCcccccccc
Q 010380 237 KKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAG 280 (512)
Q Consensus 237 ~~~~~g~~v~~v~~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG 280 (512)
+..++..+..++ +.+...+++ ...|++|.+..
T Consensus 70 ----p~~~v~~~~~~~-~~~~~~~~~-------~~~d~vi~~~d 101 (135)
T PF00899_consen 70 ----PDVEVEAIPEKI-DEENIEELL-------KDYDIVIDCVD 101 (135)
T ss_dssp ----TTSEEEEEESHC-SHHHHHHHH-------HTSSEEEEESS
T ss_pred ----Cceeeeeeeccc-ccccccccc-------cCCCEEEEecC
Confidence 345777777777 333344443 25688877643
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.094 Score=49.10 Aligned_cols=43 Identities=23% Similarity=0.365 Sum_probs=37.5
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHH
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVR 215 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~ 215 (512)
.++.+|+++|.|++.-+|..+|+.|.++|++|.++.|+.+.+.
T Consensus 40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~~l~ 82 (168)
T cd01080 40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTKNLK 82 (168)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCchhHH
Confidence 4789999999999655799999999999999999999875543
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.18 Score=49.35 Aligned_cols=37 Identities=22% Similarity=0.325 Sum_probs=31.5
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRS 210 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~ 210 (512)
.++.+++|+|.| .||+|.++|+.|+..|. ++.+++.+
T Consensus 17 ~~L~~~~VlivG-~GglGs~va~~La~~Gvg~i~lvD~D 54 (228)
T cd00757 17 EKLKNARVLVVG-AGGLGSPAAEYLAAAGVGKLGLVDDD 54 (228)
T ss_pred HHHhCCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 457788999999 57999999999999997 78888654
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.11 Score=55.73 Aligned_cols=46 Identities=20% Similarity=0.426 Sum_probs=39.3
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEEcChhhHHHHHHH
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSG-DRVVVASRSSESVRMTVTE 220 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~G-a~Vvl~~R~~~~l~~~~~e 220 (512)
++.+++++|.|+ |.+|..+++.|...| .+|++++|+.+++++..++
T Consensus 177 ~l~~~~VlViGa-G~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~ 223 (417)
T TIGR01035 177 SLKGKKALLIGA-GEMGELVAKHLLRKGVGKILIANRTYERAEDLAKE 223 (417)
T ss_pred CccCCEEEEECC-hHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHH
Confidence 478899999997 999999999999999 6899999998776555443
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.16 Score=49.73 Aligned_cols=75 Identities=20% Similarity=0.368 Sum_probs=55.4
Q ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhhH
Q 010380 179 NVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPADV 258 (512)
Q Consensus 179 ~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~sv 258 (512)
.++|.|+ |-+|..+|+.|.+.|++|++++++++..++...+ ....+.+.+|-+|++.+
T Consensus 2 ~iiIiG~-G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~---------------------~~~~~~v~gd~t~~~~L 59 (225)
T COG0569 2 KIIIIGA-GRVGRSVARELSEEGHNVVLIDRDEERVEEFLAD---------------------ELDTHVVIGDATDEDVL 59 (225)
T ss_pred EEEEECC-cHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhh---------------------hcceEEEEecCCCHHHH
Confidence 4566665 6799999999999999999999999887653331 13467788999998877
Q ss_pred HHHHHHHHHHcCCCccccccccc
Q 010380 259 QKLSNFAVNEFGSIDIWINNAGT 281 (512)
Q Consensus 259 ~~~~~~i~~~~g~IDvLInnAG~ 281 (512)
+++= ....|++|...|.
T Consensus 60 ~~ag------i~~aD~vva~t~~ 76 (225)
T COG0569 60 EEAG------IDDADAVVAATGN 76 (225)
T ss_pred HhcC------CCcCCEEEEeeCC
Confidence 7651 1246777666553
|
|
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.12 Score=56.93 Aligned_cols=45 Identities=29% Similarity=0.459 Sum_probs=39.9
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcChhhHHHHHHH
Q 010380 175 AGPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRSSESVRMTVTE 220 (512)
Q Consensus 175 l~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~~~l~~~~~e 220 (512)
+.+++++|.|+ |++|..+++.|...|+ +|+++.|+.++++.+.++
T Consensus 264 l~~kkVlVIGA-G~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~ 309 (519)
T PLN00203 264 HASARVLVIGA-GKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREE 309 (519)
T ss_pred CCCCEEEEEeC-HHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH
Confidence 77999999998 9999999999999997 799999998887665544
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.17 Score=43.52 Aligned_cols=70 Identities=27% Similarity=0.314 Sum_probs=49.3
Q ss_pred EEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhhHH
Q 010380 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPADVQ 259 (512)
Q Consensus 180 vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~sv~ 259 (512)
++|.|. +.+|+.+++.|.+.+.+|++++++++..+.+. + .+ +.++.+|.+|++.++
T Consensus 1 vvI~G~-g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~----~-----------------~~--~~~i~gd~~~~~~l~ 56 (116)
T PF02254_consen 1 VVIIGY-GRIGREIAEQLKEGGIDVVVIDRDPERVEELR----E-----------------EG--VEVIYGDATDPEVLE 56 (116)
T ss_dssp EEEES--SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHH----H-----------------TT--SEEEES-TTSHHHHH
T ss_pred eEEEcC-CHHHHHHHHHHHhCCCEEEEEECCcHHHHHHH----h-----------------cc--cccccccchhhhHHh
Confidence 477787 47999999999997779999999988755432 2 12 567889999998877
Q ss_pred HHHHHHHHHcCCCccccccc
Q 010380 260 KLSNFAVNEFGSIDIWINNA 279 (512)
Q Consensus 260 ~~~~~i~~~~g~IDvLInnA 279 (512)
++- ..+.|.+|...
T Consensus 57 ~a~------i~~a~~vv~~~ 70 (116)
T PF02254_consen 57 RAG------IEKADAVVILT 70 (116)
T ss_dssp HTT------GGCESEEEEES
T ss_pred hcC------ccccCEEEEcc
Confidence 641 12455555544
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.28 Score=44.10 Aligned_cols=30 Identities=27% Similarity=0.465 Sum_probs=26.8
Q ss_pred EEEECCCChHHHHHHHHHHHCCC-EEEEEEcC
Q 010380 180 VVITGSTRGLGKALAREFLLSGD-RVVVASRS 210 (512)
Q Consensus 180 vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~ 210 (512)
++|.|+ ||+|.++++.|++.|. ++.+++.+
T Consensus 2 VliiG~-GglGs~ia~~L~~~Gv~~i~ivD~d 32 (143)
T cd01483 2 VLLVGL-GGLGSEIALNLARSGVGKITLIDFD 32 (143)
T ss_pred EEEECC-CHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 688887 8999999999999997 79998765
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.69 Score=47.66 Aligned_cols=116 Identities=13% Similarity=0.117 Sum_probs=74.3
Q ss_pred CEEEEECCCChHHHHHHHHHHHCCC--EEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCCh
Q 010380 178 RNVVITGSTRGLGKALAREFLLSGD--RVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEP 255 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~Ga--~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~ 255 (512)
..|.|+|+ |.+|..+|..|+..|. .+++++.+++.++....++....+- ... ...... .|.
T Consensus 4 ~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~-------------~~~-~~v~~~--~dy 66 (312)
T cd05293 4 NKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAF-------------LKN-PKIEAD--KDY 66 (312)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhcc-------------CCC-CEEEEC--CCH
Confidence 46799996 9999999999998883 7999999988887777777653210 111 111111 122
Q ss_pred hhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 256 ADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 256 ~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
++ +..-|++|.+||... .+ ..+. ...+..|. -+.+.+.+.+.+....+.++++|-
T Consensus 67 ~~-----------~~~adivvitaG~~~--k~--g~~R---~dll~~N~----~i~~~~~~~i~~~~p~~~vivvsN 121 (312)
T cd05293 67 SV-----------TANSKVVIVTAGARQ--NE--GESR---LDLVQRNV----DIFKGIIPKLVKYSPNAILLVVSN 121 (312)
T ss_pred HH-----------hCCCCEEEECCCCCC--CC--CCCH---HHHHHHHH----HHHHHHHHHHHHhCCCcEEEEccC
Confidence 21 236799999999854 22 2343 23445554 345666666666656778888764
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.18 Score=51.92 Aligned_cols=115 Identities=14% Similarity=0.205 Sum_probs=68.9
Q ss_pred EEEECCCChHHHHHHHHHHHCCC--EEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhh
Q 010380 180 VVITGSTRGLGKALAREFLLSGD--RVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPAD 257 (512)
Q Consensus 180 vLVTGassGIG~aiA~~La~~Ga--~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~s 257 (512)
|.|+|++|.+|..+|..|+.+|. +++++++++ .+...-+|... ........+. +.++
T Consensus 2 V~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~--a~g~a~DL~~~-----------------~~~~~i~~~~--~~~~ 60 (312)
T TIGR01772 2 VAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG--AAGVAADLSHI-----------------PTAASVKGFS--GEEG 60 (312)
T ss_pred EEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC--CcEEEchhhcC-----------------CcCceEEEec--CCCc
Confidence 68999999999999999998884 799999876 22112222210 0001111100 0001
Q ss_pred HHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 258 VQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 258 v~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
..+.+..-|++|..||... .+ ..+ -...+..|+. +.+...+.+.+....+.|+++|-.
T Consensus 61 -------~~~~~~daDivvitaG~~~--~~--g~~---R~dll~~N~~----I~~~i~~~i~~~~p~~iiivvsNP 118 (312)
T TIGR01772 61 -------LENALKGADVVVIPAGVPR--KP--GMT---RDDLFNVNAG----IVKDLVAAVAESCPKAMILVITNP 118 (312)
T ss_pred -------hHHHcCCCCEEEEeCCCCC--CC--Ccc---HHHHHHHhHH----HHHHHHHHHHHhCCCeEEEEecCc
Confidence 1223457899999999753 22 222 2345666665 666677777766567778887644
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.27 Score=46.13 Aligned_cols=31 Identities=29% Similarity=0.350 Sum_probs=27.6
Q ss_pred EEEECCCChHHHHHHHHHHHCCC-EEEEEEcCh
Q 010380 180 VVITGSTRGLGKALAREFLLSGD-RVVVASRSS 211 (512)
Q Consensus 180 vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~ 211 (512)
|+|.|+ ||+|.++++.|++.|. ++.+++.+.
T Consensus 2 VlViG~-GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 2 VGIAGA-GGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred EEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 678885 8999999999999998 699999875
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.17 Score=52.06 Aligned_cols=45 Identities=20% Similarity=0.383 Sum_probs=38.2
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEEcChhhHHHHHHH
Q 010380 175 AGPRNVVITGSTRGLGKALAREFLLSG-DRVVVASRSSESVRMTVTE 220 (512)
Q Consensus 175 l~gk~vLVTGassGIG~aiA~~La~~G-a~Vvl~~R~~~~l~~~~~e 220 (512)
+.+++++|.|+ |.+|..+++.|...| .+|++++|+.++.++..++
T Consensus 176 l~~~~V~ViGa-G~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~ 221 (311)
T cd05213 176 LKGKKVLVIGA-GEMGELAAKHLAAKGVAEITIANRTYERAEELAKE 221 (311)
T ss_pred ccCCEEEEECc-HHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHH
Confidence 67899999987 999999999999877 5799999998877665544
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.14 Score=52.47 Aligned_cols=40 Identities=20% Similarity=0.268 Sum_probs=34.5
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEEcChhhHHH
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDR-VVVASRSSESVRM 216 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~-Vvl~~R~~~~l~~ 216 (512)
.|++++|+|+ +++|..+++.+...|++ |+++++++++.+.
T Consensus 163 ~g~~vlV~G~-G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~ 203 (339)
T cd08239 163 GRDTVLVVGA-GPVGLGALMLARALGAEDVIGVDPSPERLEL 203 (339)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHH
Confidence 4889999986 89999999999999998 9999988877543
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.16 Score=45.74 Aligned_cols=56 Identities=18% Similarity=0.215 Sum_probs=44.0
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCCh
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEP 255 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~ 255 (512)
+++.+++.|.. .|.++|..|++.|++|+.++.+++..+.+. + ..+.++.+|+.++
T Consensus 16 ~~~kileIG~G--fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~----~-------------------~~~~~v~dDlf~p 70 (134)
T PRK04148 16 KNKKIVELGIG--FYFKVAKKLKESGFDVIVIDINEKAVEKAK----K-------------------LGLNAFVDDLFNP 70 (134)
T ss_pred cCCEEEEEEec--CCHHHHHHHHHCCCEEEEEECCHHHHHHHH----H-------------------hCCeEEECcCCCC
Confidence 45789999987 788899999999999999999988654432 2 1356788898876
Q ss_pred h
Q 010380 256 A 256 (512)
Q Consensus 256 ~ 256 (512)
+
T Consensus 71 ~ 71 (134)
T PRK04148 71 N 71 (134)
T ss_pred C
Confidence 5
|
|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.14 Score=52.03 Aligned_cols=42 Identities=33% Similarity=0.429 Sum_probs=37.5
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHH
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVR 215 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~ 215 (512)
..+.||+++|.|. |++|+++|+.|...|++|++.+|++++.+
T Consensus 147 ~~l~gk~v~IiG~-G~iG~avA~~L~~~G~~V~v~~R~~~~~~ 188 (287)
T TIGR02853 147 FTIHGSNVMVLGF-GRTGMTIARTFSALGARVFVGARSSADLA 188 (287)
T ss_pred CCCCCCEEEEEcC-hHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 3788999999998 77999999999999999999999976543
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.23 Score=50.36 Aligned_cols=39 Identities=18% Similarity=0.192 Sum_probs=33.3
Q ss_pred cCCCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcCh
Q 010380 172 HCKAGPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRSS 211 (512)
Q Consensus 172 ~~~l~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~ 211 (512)
..++++.+|+|.|+ ||+|..++..|+..|. ++.+++.+.
T Consensus 22 Q~kL~~s~VlIvG~-GGLGs~va~~LA~aGVG~i~lvD~D~ 61 (287)
T PRK08223 22 QQRLRNSRVAIAGL-GGVGGIHLLTLARLGIGKFTIADFDV 61 (287)
T ss_pred HHHHhcCCEEEECC-CHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 34677888999986 6999999999999997 899998863
|
|
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.2 Score=51.86 Aligned_cols=119 Identities=13% Similarity=0.136 Sum_probs=71.3
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-------EEEEEEcChh--hHHHHHHHHHHHHhhhhhhcCCCCcccccCceEE
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGD-------RVVVASRSSE--SVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVA 246 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga-------~Vvl~~R~~~--~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~ 246 (512)
+++.|.|+|++|.+|..+|..|+..|. .+++++.++. +++....++...... ....+.
T Consensus 3 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~-------------~~~~~~ 69 (326)
T PRK05442 3 APVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFP-------------LLAGVV 69 (326)
T ss_pred CCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhh-------------hcCCcE
Confidence 356789999999999999999998773 6999998543 355444454432100 001111
Q ss_pred EEEccCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCC-CCC
Q 010380 247 GIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQP-KGG 325 (512)
Q Consensus 247 ~v~~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~-~~g 325 (512)
. .. .+ .+.+..-|++|..||... .+ ..+ -.+.++.|.. +.+.+.+.+.+.. ..+
T Consensus 70 i-~~--~~-----------y~~~~daDiVVitaG~~~--k~--g~t---R~dll~~Na~----i~~~i~~~i~~~~~~~~ 124 (326)
T PRK05442 70 I-TD--DP-----------NVAFKDADVALLVGARPR--GP--GME---RKDLLEANGA----IFTAQGKALNEVAARDV 124 (326)
T ss_pred E-ec--Ch-----------HHHhCCCCEEEEeCCCCC--CC--CCc---HHHHHHHHHH----HHHHHHHHHHHhCCCCe
Confidence 1 11 11 223346899999999753 22 223 3445555543 5566677776633 466
Q ss_pred eEEeecC
Q 010380 326 HIFNMDG 332 (512)
Q Consensus 326 ~IV~vSS 332 (512)
.++++|-
T Consensus 125 iiivvsN 131 (326)
T PRK05442 125 KVLVVGN 131 (326)
T ss_pred EEEEeCC
Confidence 7777753
|
|
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=93.82 E-value=0.15 Score=60.17 Aligned_cols=78 Identities=21% Similarity=0.244 Sum_probs=59.5
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC-CE-------------EEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccc
Q 010380 175 AGPRNVVITGSTRGLGKALAREFLLSG-DR-------------VVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNL 240 (512)
Q Consensus 175 l~gk~vLVTGassGIG~aiA~~La~~G-a~-------------Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~ 240 (512)
.+.|.|+|.|+ |.+|...|+.|++.. +. |++++++.+.++++.+.+
T Consensus 567 ~~~~rIlVLGA-G~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~------------------- 626 (1042)
T PLN02819 567 KKSQNVLILGA-GRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGI------------------- 626 (1042)
T ss_pred ccCCcEEEECC-CHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhc-------------------
Confidence 35788999997 899999999999764 33 888899887766554432
Q ss_pred cCceEEEEEccCCChhhHHHHHHHHHHHcCCCccccccccc
Q 010380 241 VHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGT 281 (512)
Q Consensus 241 ~g~~v~~v~~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~ 281 (512)
.++..+++|++|.+++.++++ .+|+||++...
T Consensus 627 --~~~~~v~lDv~D~e~L~~~v~-------~~DaVIsalP~ 658 (1042)
T PLN02819 627 --ENAEAVQLDVSDSESLLKYVS-------QVDVVISLLPA 658 (1042)
T ss_pred --CCCceEEeecCCHHHHHHhhc-------CCCEEEECCCc
Confidence 135678999999988776654 48999988864
|
|
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=93.81 E-value=0.79 Score=49.44 Aligned_cols=116 Identities=13% Similarity=0.154 Sum_probs=76.7
Q ss_pred CEEEEECCCChHHHHHHHHHHHC-------CC--EEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEE
Q 010380 178 RNVVITGSTRGLGKALAREFLLS-------GD--RVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGI 248 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~-------Ga--~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v 248 (512)
=.|.|+|++|.+|.++|..|+.. |. +++++++++++++...-+|.+.... ...++.+
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~-------------~~~~v~i- 166 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYP-------------LLREVSI- 166 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhh-------------hcCceEE-
Confidence 46899999999999999999988 74 7999999999998888888763210 0112211
Q ss_pred EccCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHh-CCCCCeE
Q 010380 249 ACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRD-QPKGGHI 327 (512)
Q Consensus 249 ~~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~-~~~~g~I 327 (512)
.. .+++ .+..-|++|..||... ++ ..+. .+.++.|.. +.+...+.+.+ ....+.|
T Consensus 167 ~~--~~ye-----------~~kdaDiVVitAG~pr--kp--G~tR---~dLl~~N~~----I~k~i~~~I~~~a~p~~iv 222 (444)
T PLN00112 167 GI--DPYE-----------VFQDAEWALLIGAKPR--GP--GMER---ADLLDINGQ----IFAEQGKALNEVASRNVKV 222 (444)
T ss_pred ec--CCHH-----------HhCcCCEEEECCCCCC--CC--CCCH---HHHHHHHHH----HHHHHHHHHHHhcCCCeEE
Confidence 11 1222 2346899999999853 22 2333 345566654 55666666666 4456777
Q ss_pred Eeec
Q 010380 328 FNMD 331 (512)
Q Consensus 328 V~vS 331 (512)
|++|
T Consensus 223 IVVs 226 (444)
T PLN00112 223 IVVG 226 (444)
T ss_pred EEcC
Confidence 7775
|
|
| >TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.2 Score=52.44 Aligned_cols=41 Identities=12% Similarity=0.278 Sum_probs=34.6
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcChhhHHHH
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRSSESVRMT 217 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~~~l~~~ 217 (512)
.|.+++|+|+ ++||...++.+...|+ +|+.+++++++++.+
T Consensus 185 ~g~~VlV~G~-G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a 226 (368)
T TIGR02818 185 EGDTVAVFGL-GGIGLSVIQGARMAKASRIIAIDINPAKFELA 226 (368)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH
Confidence 4789999985 8999999998888998 799999988876543
|
The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols. |
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.2 Score=53.89 Aligned_cols=38 Identities=24% Similarity=0.380 Sum_probs=33.7
Q ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHH
Q 010380 179 NVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMT 217 (512)
Q Consensus 179 ~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~ 217 (512)
+++|.|+ |.+|.++++.|.++|+.|++++++++..+..
T Consensus 2 ~viIiG~-G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~ 39 (453)
T PRK09496 2 KIIIVGA-GQVGYTLAENLSGENNDVTVIDTDEERLRRL 39 (453)
T ss_pred EEEEECC-CHHHHHHHHHHHhCCCcEEEEECCHHHHHHH
Confidence 5788887 9999999999999999999999998876554
|
|
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.26 Score=43.58 Aligned_cols=76 Identities=24% Similarity=0.413 Sum_probs=53.3
Q ss_pred EEEEECCCChHHHHHHHHHHH-CCCEEE-EEEcCh----------------------hhHHHHHHHHHHHHhhhhhhcCC
Q 010380 179 NVVITGSTRGLGKALAREFLL-SGDRVV-VASRSS----------------------ESVRMTVTELEENLKEGMMAAGG 234 (512)
Q Consensus 179 ~vLVTGassGIG~aiA~~La~-~Ga~Vv-l~~R~~----------------------~~l~~~~~el~~~~~~~~~~~g~ 234 (512)
.|+|.|++|-+|+++++.+.+ .|.+++ .++|++ +.+++..++
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~-------------- 67 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEE-------------- 67 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH--------------
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhccc--------------
Confidence 479999999999999999999 677755 456665 112211111
Q ss_pred CCcccccCceEEEEEccCCChhhHHHHHHHHHHHcCCCccccccccc
Q 010380 235 SSKKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGT 281 (512)
Q Consensus 235 ~~~~~~~g~~v~~v~~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~ 281 (512)
.. +..|+|.++.+...++.+.+. ++.+++-..|.
T Consensus 68 --------~D---VvIDfT~p~~~~~~~~~~~~~--g~~~ViGTTG~ 101 (124)
T PF01113_consen 68 --------AD---VVIDFTNPDAVYDNLEYALKH--GVPLVIGTTGF 101 (124)
T ss_dssp ---------S---EEEEES-HHHHHHHHHHHHHH--T-EEEEE-SSS
T ss_pred --------CC---EEEEcCChHHhHHHHHHHHhC--CCCEEEECCCC
Confidence 11 677999999999999988776 67888877775
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >cd08244 MDR_enoyl_red Possible enoyl reductase | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.16 Score=51.22 Aligned_cols=41 Identities=24% Similarity=0.293 Sum_probs=36.2
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHH
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRM 216 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~ 216 (512)
.+.+++|+|+++++|.++++.+...|++|+.+++++++.+.
T Consensus 142 ~~~~vlI~g~~~~~g~~~~~la~~~g~~v~~~~~~~~~~~~ 182 (324)
T cd08244 142 PGDVVLVTAAAGGLGSLLVQLAKAAGATVVGAAGGPAKTAL 182 (324)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 47789999999999999999999999999999988776543
|
Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr |
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.36 Score=47.84 Aligned_cols=39 Identities=21% Similarity=0.262 Sum_probs=33.1
Q ss_pred cCCCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcCh
Q 010380 172 HCKAGPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRSS 211 (512)
Q Consensus 172 ~~~l~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~ 211 (512)
..++++.+|+|.|+ ||+|..+++.|++.|. ++++++.+.
T Consensus 19 q~~L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~D~ 58 (240)
T TIGR02355 19 QEALKASRVLIVGL-GGLGCAASQYLAAAGVGNLTLLDFDT 58 (240)
T ss_pred HHHHhCCcEEEECc-CHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence 34677888999986 6999999999999996 899988863
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.32 Score=52.85 Aligned_cols=39 Identities=28% Similarity=0.262 Sum_probs=33.7
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChh
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSE 212 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~ 212 (512)
..+++|+|+|.|+ |++|.++|+.|+++|++|++.++++.
T Consensus 12 ~~~~~~~v~viG~-G~~G~~~A~~L~~~G~~V~~~d~~~~ 50 (480)
T PRK01438 12 SDWQGLRVVVAGL-GVSGFAAADALLELGARVTVVDDGDD 50 (480)
T ss_pred cCcCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 3567899999996 78999999999999999999986643
|
|
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=93.61 E-value=1.5 Score=45.95 Aligned_cols=116 Identities=15% Similarity=0.220 Sum_probs=74.4
Q ss_pred CEEEEECCCChHHHHHHHHHHHCCC--EEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCCh
Q 010380 178 RNVVITGSTRGLGKALAREFLLSGD--RVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEP 255 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~Ga--~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~ 255 (512)
+.|.|+|+ |.+|..+|..|+..|. ++++++.++++++....++.....- .+ ... +..+ .|.
T Consensus 38 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~-------------~~-~~~-i~~~-~dy 100 (350)
T PLN02602 38 TKVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAF-------------LP-RTK-ILAS-TDY 100 (350)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhc-------------CC-CCE-EEeC-CCH
Confidence 68999996 9999999999998884 7999999998887777777653210 11 111 1111 121
Q ss_pred hhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 256 ADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 256 ~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+ .+..-|++|..||... .+ ..+.. ..+..|. -+.+.+.+.+.+....+.+++++-
T Consensus 101 ~-----------~~~daDiVVitAG~~~--k~--g~tR~---dll~~N~----~I~~~i~~~I~~~~p~~ivivvtN 155 (350)
T PLN02602 101 A-----------VTAGSDLCIVTAGARQ--IP--GESRL---NLLQRNV----ALFRKIIPELAKYSPDTILLIVSN 155 (350)
T ss_pred H-----------HhCCCCEEEECCCCCC--Cc--CCCHH---HHHHHHH----HHHHHHHHHHHHHCCCeEEEEecC
Confidence 1 1236799999999854 22 23332 3344443 455666666666556677887763
|
|
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=93.49 E-value=1.2 Score=45.58 Aligned_cols=113 Identities=19% Similarity=0.243 Sum_probs=71.4
Q ss_pred EEECCCChHHHHHHHHHHHCC--CEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhhH
Q 010380 181 VITGSTRGLGKALAREFLLSG--DRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPADV 258 (512)
Q Consensus 181 LVTGassGIG~aiA~~La~~G--a~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~sv 258 (512)
.|.|+ |++|..+|..|+..| .+++++++++++++....+|.+.... . .......+ .|.+
T Consensus 2 ~iiGa-G~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~-------------~-~~~~i~~~--~~~~-- 62 (300)
T cd00300 2 TIIGA-GNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAF-------------L-ATGTIVRG--GDYA-- 62 (300)
T ss_pred EEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccc-------------c-CCCeEEEC--CCHH--
Confidence 57786 689999999999999 57999999999888888877663210 0 11111111 1211
Q ss_pred HHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 259 QKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 259 ~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
.+..-|++|.+||... .+ ..+. ...+..|+ -+.+.+.+.+.+....+.++++|-
T Consensus 63 ---------~l~~aDiVIitag~p~--~~--~~~R---~~l~~~n~----~i~~~~~~~i~~~~p~~~viv~sN 116 (300)
T cd00300 63 ---------DAADADIVVITAGAPR--KP--GETR---LDLINRNA----PILRSVITNLKKYGPDAIILVVSN 116 (300)
T ss_pred ---------HhCCCCEEEEcCCCCC--CC--CCCH---HHHHHHHH----HHHHHHHHHHHHhCCCeEEEEccC
Confidence 2236899999999853 21 2232 23333443 455666666666656778887764
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=93.49 E-value=0.39 Score=50.72 Aligned_cols=38 Identities=16% Similarity=0.301 Sum_probs=33.2
Q ss_pred cCCCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcC
Q 010380 172 HCKAGPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRS 210 (512)
Q Consensus 172 ~~~l~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~ 210 (512)
..++.+.+|+|.|+ ||+|..+++.|+..|. ++++++.+
T Consensus 36 q~~l~~~~VliiG~-GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 36 QERLHNARVLVIGA-GGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred HHHhcCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 44677888999986 6999999999999996 89999886
|
|
| >cd08300 alcohol_DH_class_III class III alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=93.44 E-value=0.23 Score=51.85 Aligned_cols=79 Identities=14% Similarity=0.213 Sum_probs=53.1
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCC
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCE 254 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd 254 (512)
.|.+++|.|+ +++|..+++.+...|+ +|+.+++++++++.+ +++ +... ..|..+
T Consensus 186 ~g~~VlV~G~-G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~-~~l--------------------Ga~~---~i~~~~ 240 (368)
T cd08300 186 PGSTVAVFGL-GAVGLAVIQGAKAAGASRIIGIDINPDKFELA-KKF--------------------GATD---CVNPKD 240 (368)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHH-HHc--------------------CCCE---EEcccc
Confidence 4789999985 8999999999999999 799999998876533 222 2211 124333
Q ss_pred h-hhHHHHHHHHHHHcCCCccccccccc
Q 010380 255 P-ADVQKLSNFAVNEFGSIDIWINNAGT 281 (512)
Q Consensus 255 ~-~sv~~~~~~i~~~~g~IDvLInnAG~ 281 (512)
. +++.+.+.++.. +.+|++|.+.|.
T Consensus 241 ~~~~~~~~v~~~~~--~g~d~vid~~g~ 266 (368)
T cd08300 241 HDKPIQQVLVEMTD--GGVDYTFECIGN 266 (368)
T ss_pred cchHHHHHHHHHhC--CCCcEEEECCCC
Confidence 3 234444444332 369999998874
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim |
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.42 Score=46.98 Aligned_cols=40 Identities=23% Similarity=0.362 Sum_probs=33.3
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcChhh
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRSSES 213 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~~~ 213 (512)
.++.+++|+|.|+ ||+|.++++.|+..|. ++++++.+.-+
T Consensus 23 ~~L~~~~VlIiG~-GGlGs~ia~~La~~Gvg~i~lvD~D~ve 63 (231)
T PRK08328 23 EKLKKAKVAVVGV-GGLGSPVAYYLAAAGVGRILLIDEQTPE 63 (231)
T ss_pred HHHhCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCccC
Confidence 3567788999986 6999999999999997 79999876433
|
|
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.28 Score=46.36 Aligned_cols=47 Identities=26% Similarity=0.420 Sum_probs=39.3
Q ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHh
Q 010380 179 NVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLK 226 (512)
Q Consensus 179 ~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~ 226 (512)
+|.|.|+ |-+|..+|..++..|++|.+.+++++.++...+.+++.+.
T Consensus 1 ~V~ViGa-G~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~ 47 (180)
T PF02737_consen 1 KVAVIGA-GTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLD 47 (180)
T ss_dssp EEEEES--SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHH
T ss_pred CEEEEcC-CHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHh
Confidence 4678887 8999999999999999999999999999888887776443
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >PLN02740 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=93.42 E-value=0.34 Score=50.99 Aligned_cols=41 Identities=20% Similarity=0.234 Sum_probs=35.0
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcChhhHHHH
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRSSESVRMT 217 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~~~l~~~ 217 (512)
.|++++|.|+ +++|..+++.+...|+ +|+++++++++++.+
T Consensus 198 ~g~~VlV~G~-G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a 239 (381)
T PLN02740 198 AGSSVAIFGL-GAVGLAVAEGARARGASKIIGVDINPEKFEKG 239 (381)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCCcEEEEcCChHHHHHH
Confidence 5789999986 9999999999989998 699999988776543
|
|
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=93.30 E-value=0.24 Score=44.96 Aligned_cols=45 Identities=13% Similarity=0.197 Sum_probs=39.5
Q ss_pred cCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHH
Q 010380 172 HCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRM 216 (512)
Q Consensus 172 ~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~ 216 (512)
..+++||.++|.|.+.-.|+.++..|.++|++|.++.++...+++
T Consensus 23 ~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~ 67 (140)
T cd05212 23 GVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQS 67 (140)
T ss_pred CCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHH
Confidence 457899999999999999999999999999999999876654443
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=93.29 E-value=0.39 Score=51.11 Aligned_cols=47 Identities=19% Similarity=0.415 Sum_probs=41.6
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEEcChhhHHHHHHHH
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSG-DRVVVASRSSESVRMTVTEL 221 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~G-a~Vvl~~R~~~~l~~~~~el 221 (512)
++++|+++|.|+ |-+|.-+|++|+++| .+|+++.|+.++++++++++
T Consensus 175 ~L~~~~vlvIGA-Gem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~ 222 (414)
T COG0373 175 SLKDKKVLVIGA-GEMGELVAKHLAEKGVKKITIANRTLERAEELAKKL 222 (414)
T ss_pred ccccCeEEEEcc-cHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHh
Confidence 478999999997 579999999999999 58999999999988877765
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=93.17 E-value=0.32 Score=52.26 Aligned_cols=76 Identities=18% Similarity=0.198 Sum_probs=56.1
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCC
Q 010380 175 AGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCE 254 (512)
Q Consensus 175 l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd 254 (512)
...++++|.|+ |.+|..+++.|.++|.+|++++++++..+...++ +..+.++..|.++
T Consensus 229 ~~~~~iiIiG~-G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~---------------------~~~~~~i~gd~~~ 286 (453)
T PRK09496 229 KPVKRVMIVGG-GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEE---------------------LPNTLVLHGDGTD 286 (453)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHH---------------------CCCCeEEECCCCC
Confidence 45788999998 8999999999999999999999998876544332 1235568889998
Q ss_pred hhhHHHHHHHHHHHcCCCcccccc
Q 010380 255 PADVQKLSNFAVNEFGSIDIWINN 278 (512)
Q Consensus 255 ~~sv~~~~~~i~~~~g~IDvLInn 278 (512)
++.++++- ....|.+|..
T Consensus 287 ~~~L~~~~------~~~a~~vi~~ 304 (453)
T PRK09496 287 QELLEEEG------IDEADAFIAL 304 (453)
T ss_pred HHHHHhcC------CccCCEEEEC
Confidence 87765431 1245666543
|
|
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=93.11 E-value=0.27 Score=47.74 Aligned_cols=43 Identities=23% Similarity=0.448 Sum_probs=37.4
Q ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHH
Q 010380 179 NVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTEL 221 (512)
Q Consensus 179 ~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el 221 (512)
++.|.||+|.+|.++++.|++.|++|++.+|++++.+...++.
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~ 44 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKA 44 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHH
Confidence 4789999999999999999999999999999988876655543
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=93.07 E-value=0.75 Score=47.36 Aligned_cols=116 Identities=16% Similarity=0.208 Sum_probs=68.6
Q ss_pred EEEEECCCChHHHHHHHHHHHCC--CEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChh
Q 010380 179 NVVITGSTRGLGKALAREFLLSG--DRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPA 256 (512)
Q Consensus 179 ~vLVTGassGIG~aiA~~La~~G--a~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~ 256 (512)
.|.|+|++|.+|.++|..|+.+| .++++++.+ +++...-+|.... ...++. .+. .+ +
T Consensus 2 KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a~g~alDL~~~~---------------~~~~i~--~~~-~~-~ 60 (310)
T cd01337 2 KVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NTPGVAADLSHIN---------------TPAKVT--GYL-GP-E 60 (310)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--ccceeehHhHhCC---------------CcceEE--Eec-CC-C
Confidence 57899999999999999999988 479999998 4333333343310 001111 110 00 1
Q ss_pred hHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 257 DVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 257 sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
+ +.+.+..-|++|.+||... .+ ..+ =...++.|..- .+...+.+.+....+.++++|-.
T Consensus 61 ~-------~y~~~~daDivvitaG~~~--k~--g~t---R~dll~~N~~i----~~~i~~~i~~~~p~a~vivvtNP 119 (310)
T cd01337 61 E-------LKKALKGADVVVIPAGVPR--KP--GMT---RDDLFNINAGI----VRDLATAVAKACPKALILIISNP 119 (310)
T ss_pred c-------hHHhcCCCCEEEEeCCCCC--CC--CCC---HHHHHHHHHHH----HHHHHHHHHHhCCCeEEEEccCc
Confidence 1 1123346899999999853 22 223 24456666554 44455555555456788887654
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=93.02 E-value=0.44 Score=44.03 Aligned_cols=89 Identities=20% Similarity=0.168 Sum_probs=52.5
Q ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhhH
Q 010380 179 NVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPADV 258 (512)
Q Consensus 179 ~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~sv 258 (512)
+|-+.|- |-+|..+|+.|+++|++|.+.+|++++.+++.++-... . .+... .-.+..++-.=+.|.+++
T Consensus 3 ~Ig~IGl-G~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~-------~--~s~~e-~~~~~dvvi~~v~~~~~v 71 (163)
T PF03446_consen 3 KIGFIGL-GNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEV-------A--DSPAE-AAEQADVVILCVPDDDAV 71 (163)
T ss_dssp EEEEE---SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEE-------E--SSHHH-HHHHBSEEEE-SSSHHHH
T ss_pred EEEEEch-HHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhh-------h--hhhhh-HhhcccceEeecccchhh
Confidence 4667776 78999999999999999999999998877665321000 0 00000 001223455567788888
Q ss_pred HHHHHH--HHHHcCCCcccccc
Q 010380 259 QKLSNF--AVNEFGSIDIWINN 278 (512)
Q Consensus 259 ~~~~~~--i~~~~g~IDvLInn 278 (512)
++++.. +.....+=+++|+.
T Consensus 72 ~~v~~~~~i~~~l~~g~iiid~ 93 (163)
T PF03446_consen 72 EAVLFGENILAGLRPGKIIIDM 93 (163)
T ss_dssp HHHHHCTTHGGGS-TTEEEEE-
T ss_pred hhhhhhhHHhhccccceEEEec
Confidence 888776 54443333344433
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=92.99 E-value=0.36 Score=52.03 Aligned_cols=38 Identities=13% Similarity=0.238 Sum_probs=33.5
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChh
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSE 212 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~ 212 (512)
.+.+|+++|+|.+ |+|.++|+.|+++|++|++.+.+..
T Consensus 2 ~~~~~~~~v~G~g-~~G~~~a~~l~~~g~~v~~~d~~~~ 39 (445)
T PRK04308 2 TFQNKKILVAGLG-GTGISMIAYLRKNGAEVAAYDAELK 39 (445)
T ss_pred CCCCCEEEEECCC-HHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 3578999999985 9999999999999999999987654
|
|
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=92.86 E-value=0.49 Score=48.98 Aligned_cols=41 Identities=22% Similarity=0.319 Sum_probs=36.0
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHH
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMT 217 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~ 217 (512)
.|++++|.|+ +++|..+++.+...|++|+++++++++++.+
T Consensus 166 ~g~~VlV~G~-G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~ 206 (349)
T TIGR03201 166 KGDLVIVIGA-GGVGGYMVQTAKAMGAAVVAIDIDPEKLEMM 206 (349)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCeEEEEcCCHHHHHHH
Confidence 4789999999 9999999999999999999999988876533
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=92.81 E-value=0.69 Score=47.89 Aligned_cols=116 Identities=16% Similarity=0.162 Sum_probs=70.7
Q ss_pred CEEEEECCCChHHHHHHHHHHHCCC-------EEEEEEcCh--hhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEE
Q 010380 178 RNVVITGSTRGLGKALAREFLLSGD-------RVVVASRSS--ESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGI 248 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~Ga-------~Vvl~~R~~--~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v 248 (512)
-.|.|+|++|.+|..+|..|+..|. ++++.+.++ ++++....++...... ....+. +
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~-------------~~~~~~-i 69 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFP-------------LLAGVV-A 69 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhcccc-------------ccCCcE-E
Confidence 3689999999999999999998883 799999965 4466555565442100 000111 1
Q ss_pred EccCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCC-CCeE
Q 010380 249 ACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPK-GGHI 327 (512)
Q Consensus 249 ~~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~-~g~I 327 (512)
.. .+. +.+..-|++|..||... .+ ..+. ...++.|.. +.+.+.+.+.+... .+.+
T Consensus 70 ~~--~~~-----------~~~~daDvVVitAG~~~--k~--g~tR---~dll~~Na~----i~~~i~~~i~~~~~~~~ii 125 (323)
T TIGR01759 70 TT--DPE-----------EAFKDVDAALLVGAFPR--KP--GMER---ADLLSKNGK----IFKEQGKALNKVAKKDVKV 125 (323)
T ss_pred ec--ChH-----------HHhCCCCEEEEeCCCCC--CC--CCcH---HHHHHHHHH----HHHHHHHHHHhhCCCCeEE
Confidence 10 111 22236799999999853 21 2333 345566654 45556666666544 6677
Q ss_pred Eeec
Q 010380 328 FNMD 331 (512)
Q Consensus 328 V~vS 331 (512)
+++|
T Consensus 126 ivvs 129 (323)
T TIGR01759 126 LVVG 129 (323)
T ss_pred EEeC
Confidence 7775
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2 | Back alignment and domain information |
|---|
Probab=92.80 E-value=0.47 Score=48.87 Aligned_cols=30 Identities=23% Similarity=0.541 Sum_probs=26.6
Q ss_pred EEEECCCChHHHHHHHHHHHCCC-EEEEEEcC
Q 010380 180 VVITGSTRGLGKALAREFLLSGD-RVVVASRS 210 (512)
Q Consensus 180 vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~ 210 (512)
|+|.|+ ||+|-++++.|+..|. ++.+++.+
T Consensus 2 VlIVGa-GGlG~EiaKnLal~Gvg~ItIvD~D 32 (312)
T cd01489 2 VLVVGA-GGIGCELLKNLVLTGFGEIHIIDLD 32 (312)
T ss_pred EEEECC-CHHHHHHHHHHHHhcCCeEEEEcCC
Confidence 688886 8999999999999997 79998875
|
UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=92.73 E-value=2.3 Score=43.65 Aligned_cols=116 Identities=18% Similarity=0.180 Sum_probs=74.2
Q ss_pred EEEECCCChHHHHHHHHHHHCCC--EEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccC-ceEEEEEccCCChh
Q 010380 180 VVITGSTRGLGKALAREFLLSGD--RVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVH-AKVAGIACDVCEPA 256 (512)
Q Consensus 180 vLVTGassGIG~aiA~~La~~Ga--~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g-~~v~~v~~Dltd~~ 256 (512)
|.|.|+ |.+|..+|..|+.+|. ++++++.++++++....+|.....- .+ .++..... |.+
T Consensus 2 i~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~-------------~~~~~~~i~~~---~y~ 64 (307)
T cd05290 2 LVVIGA-GHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATAL-------------TYSTNTKIRAG---DYD 64 (307)
T ss_pred EEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhcc-------------CCCCCEEEEEC---CHH
Confidence 578898 9999999999999884 7999999988887777777652110 11 12333322 222
Q ss_pred hHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 257 DVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 257 sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
.+..-|++|..||... .+ ..+.+ =...++.|. .+.+...|.+.+....+.++++|-
T Consensus 65 -----------~~~~aDivvitaG~~~--kp--g~tr~-R~dll~~N~----~I~~~i~~~i~~~~p~~i~ivvsN 120 (307)
T cd05290 65 -----------DCADADIIVITAGPSI--DP--GNTDD-RLDLAQTNA----KIIREIMGNITKVTKEAVIILITN 120 (307)
T ss_pred -----------HhCCCCEEEECCCCCC--CC--CCCch-HHHHHHHHH----HHHHHHHHHHHHhCCCeEEEEecC
Confidence 2236799999999854 22 22311 123344443 466777788877755666666653
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=92.72 E-value=0.3 Score=51.00 Aligned_cols=40 Identities=25% Similarity=0.222 Sum_probs=32.9
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHH
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRM 216 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~ 216 (512)
.|++++|.|+ +++|..+++.+...|++|++++.+.++..+
T Consensus 183 ~g~~VlV~G~-G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~ 222 (360)
T PLN02586 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISSSSNKEDE 222 (360)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCcchhhh
Confidence 5789999775 899999999988999999888877665433
|
|
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.67 E-value=1.3 Score=42.85 Aligned_cols=81 Identities=20% Similarity=0.280 Sum_probs=49.5
Q ss_pred EEECCCChHHHHHHHHHHHCCCEEEEEEcCh-hhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhhHH
Q 010380 181 VITGSTRGLGKALAREFLLSGDRVVVASRSS-ESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPADVQ 259 (512)
Q Consensus 181 LVTGassGIG~aiA~~La~~Ga~Vvl~~R~~-~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~sv~ 259 (512)
+..||+|-||.++|+.|++.|++|++.+|+. ++++.+.+++... ..+...........+.++..-. +.+.
T Consensus 4 ~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~------i~~~~~~dA~~~aDVVvLAVP~---~a~~ 74 (211)
T COG2085 4 IAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPL------ITGGSNEDAAALADVVVLAVPF---EAIP 74 (211)
T ss_pred EEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccc------cccCChHHHHhcCCEEEEeccH---HHHH
Confidence 5567789999999999999999999996664 4455554444321 1111111111234455554443 4566
Q ss_pred HHHHHHHHHcC
Q 010380 260 KLSNFAVNEFG 270 (512)
Q Consensus 260 ~~~~~i~~~~g 270 (512)
.+..++.+.++
T Consensus 75 ~v~~~l~~~~~ 85 (211)
T COG2085 75 DVLAELRDALG 85 (211)
T ss_pred hHHHHHHHHhC
Confidence 66777776664
|
|
| >cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2 | Back alignment and domain information |
|---|
Probab=92.66 E-value=0.3 Score=49.41 Aligned_cols=41 Identities=17% Similarity=0.123 Sum_probs=36.0
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHH
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRM 216 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~ 216 (512)
.|.+++|.|+++++|.++++.+...|++|+++.++.++.+.
T Consensus 139 ~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~~~~~~ 179 (324)
T cd08292 139 PGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRRDAGVAE 179 (324)
T ss_pred CCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCHHHHHH
Confidence 47899999999999999999999999999999888776443
|
2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina |
| >cd08301 alcohol_DH_plants Plant alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=92.46 E-value=0.39 Score=50.12 Aligned_cols=40 Identities=20% Similarity=0.259 Sum_probs=34.4
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcChhhHHH
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRSSESVRM 216 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~~~l~~ 216 (512)
.|.+|+|.|+ +++|..+++.+...|+ +|+++++++++.+.
T Consensus 187 ~g~~VlV~G~-g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~ 227 (369)
T cd08301 187 KGSTVAIFGL-GAVGLAVAEGARIRGASRIIGVDLNPSKFEQ 227 (369)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHH
Confidence 5789999985 8999999998888998 89999998876653
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the |
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=92.45 E-value=0.52 Score=48.84 Aligned_cols=34 Identities=29% Similarity=0.394 Sum_probs=30.3
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcC
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRS 210 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~ 210 (512)
.|++++|+|+ |++|...++.+...|++|++++|+
T Consensus 172 ~g~~vlI~G~-G~vG~~a~q~ak~~G~~vi~~~~~ 205 (355)
T cd08230 172 NPRRALVLGA-GPIGLLAALLLRLRGFEVYVLNRR 205 (355)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCeEEEEecC
Confidence 5788999986 999999998888899999999984
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=92.45 E-value=2.3 Score=43.58 Aligned_cols=114 Identities=19% Similarity=0.237 Sum_probs=68.9
Q ss_pred EEEEECCCChHHHHHHHHHHHCC--CEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChh
Q 010380 179 NVVITGSTRGLGKALAREFLLSG--DRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPA 256 (512)
Q Consensus 179 ~vLVTGassGIG~aiA~~La~~G--a~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~ 256 (512)
.+.|.|+ |.+|..+|..|+.+| .+|+++++++++++....++..... ......... .|.+
T Consensus 2 kI~IIGa-G~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~--------------~~~~~~i~~---~d~~ 63 (308)
T cd05292 2 KVAIVGA-GFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTP--------------FVKPVRIYA---GDYA 63 (308)
T ss_pred EEEEECC-CHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHcccc--------------ccCCeEEee---CCHH
Confidence 3788898 899999999999999 5899999998877654444443110 001111111 1211
Q ss_pred hHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 257 DVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 257 sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
....-|++|.++|... .+ ..+ ....+..|. .+.+.+.+.+.+....|.|++++.
T Consensus 64 -----------~l~~aDiViita~~~~--~~--~~~---r~dl~~~n~----~i~~~~~~~l~~~~~~giiiv~tN 117 (308)
T cd05292 64 -----------DCKGADVVVITAGANQ--KP--GET---RLDLLKRNV----AIFKEIIPQILKYAPDAILLVVTN 117 (308)
T ss_pred -----------HhCCCCEEEEccCCCC--CC--CCC---HHHHHHHHH----HHHHHHHHHHHHHCCCeEEEEecC
Confidence 1346899999999753 11 122 233344444 345555555555545677777753
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PLN02178 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=92.43 E-value=0.4 Score=50.46 Aligned_cols=37 Identities=35% Similarity=0.364 Sum_probs=32.2
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhh
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSES 213 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~ 213 (512)
.|++++|.|+ +++|..+++.....|++|++++++.++
T Consensus 178 ~g~~VlV~G~-G~vG~~avq~Ak~~Ga~Vi~~~~~~~~ 214 (375)
T PLN02178 178 SGKRLGVNGL-GGLGHIAVKIGKAFGLRVTVISRSSEK 214 (375)
T ss_pred CCCEEEEEcc-cHHHHHHHHHHHHcCCeEEEEeCChHH
Confidence 5889999986 899999999988999999998887654
|
|
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=92.43 E-value=0.73 Score=47.39 Aligned_cols=116 Identities=18% Similarity=0.297 Sum_probs=70.1
Q ss_pred EEEEECCCChHHHHHHHHHHHCC-C-EEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChh
Q 010380 179 NVVITGSTRGLGKALAREFLLSG-D-RVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPA 256 (512)
Q Consensus 179 ~vLVTGassGIG~aiA~~La~~G-a-~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~ 256 (512)
.|.|+|+ |++|.++|..|+.++ . .+++.+.+++.++....+|.....- .+.. ..+..| .+.+
T Consensus 2 KVaviGa-G~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~-------------~~~~-~~i~~~-~~y~ 65 (313)
T COG0039 2 KVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAP-------------LGSD-VKITGD-GDYE 65 (313)
T ss_pred eEEEECC-ChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchh-------------ccCc-eEEecC-CChh
Confidence 5789999 999999999999887 3 7999999977766665565442110 0111 112222 2222
Q ss_pred hHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 257 DVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 257 sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+ +..-|++|..||.... | .++. .+.++.|.. +.+.+.+.+.+....+.++.++-
T Consensus 66 ~-----------~~~aDiVvitAG~prK--p--GmtR---~DLl~~Na~----I~~~i~~~i~~~~~d~ivlVvtN 119 (313)
T COG0039 66 D-----------LKGADIVVITAGVPRK--P--GMTR---LDLLEKNAK----IVKDIAKAIAKYAPDAIVLVVTN 119 (313)
T ss_pred h-----------hcCCCEEEEeCCCCCC--C--CCCH---HHHHHhhHH----HHHHHHHHHHhhCCCeEEEEecC
Confidence 2 2368999999998652 2 1333 345566654 33444455555444566666653
|
|
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.38 E-value=0.36 Score=48.99 Aligned_cols=42 Identities=17% Similarity=0.318 Sum_probs=37.7
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhH
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESV 214 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l 214 (512)
.++.||+++|.|.+.=+|+.+|..|.++|++|+++.++...+
T Consensus 154 i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t~~l 195 (286)
T PRK14175 154 IDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSKDM 195 (286)
T ss_pred CCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchhH
Confidence 478999999999999999999999999999999998875443
|
|
| >cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members | Back alignment and domain information |
|---|
Probab=92.36 E-value=0.66 Score=47.09 Aligned_cols=40 Identities=23% Similarity=0.299 Sum_probs=35.3
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHH
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVR 215 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~ 215 (512)
.+.+++|.|+++++|.++++.....|++|+.+.+++++.+
T Consensus 139 ~~~~vlI~ga~g~ig~~~~~~a~~~g~~v~~~~~~~~~~~ 178 (329)
T cd08250 139 SGETVLVTAAAGGTGQFAVQLAKLAGCHVIGTCSSDEKAE 178 (329)
T ss_pred CCCEEEEEeCccHHHHHHHHHHHHcCCeEEEEeCcHHHHH
Confidence 4788999999999999999998899999999998876654
|
Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. |
| >cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Probab=92.33 E-value=0.63 Score=46.64 Aligned_cols=40 Identities=25% Similarity=0.289 Sum_probs=35.7
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHH
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVR 215 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~ 215 (512)
.|++++|.|+++++|.++++.+...|++|+.+.+++++.+
T Consensus 142 ~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~ 181 (320)
T cd08243 142 PGDTLLIRGGTSSVGLAALKLAKALGATVTATTRSPERAA 181 (320)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 4789999999999999999999999999999988876643
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >PRK13771 putative alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.26 E-value=0.63 Score=47.45 Aligned_cols=42 Identities=19% Similarity=0.332 Sum_probs=37.0
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHH
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMT 217 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~ 217 (512)
.+.+++|.|+++.+|.++++.+...|++|+.+++++++.+.+
T Consensus 162 ~~~~vlI~g~~g~~g~~~~~la~~~g~~vi~~~~~~~~~~~~ 203 (334)
T PRK13771 162 KGETVLVTGAGGGVGIHAIQVAKALGAKVIAVTSSESKAKIV 203 (334)
T ss_pred CCCEEEEECCCccHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 468899999999999999999999999999999988776543
|
|
| >cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1 | Back alignment and domain information |
|---|
Probab=92.25 E-value=0.37 Score=49.16 Aligned_cols=41 Identities=29% Similarity=0.394 Sum_probs=33.1
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHH
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMT 217 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~ 217 (512)
+++++++||++++|..+++.....|++|+.+++++++.+.+
T Consensus 144 ~~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~~~~~~~~~ 184 (324)
T cd08291 144 AKAVVHTAAASALGRMLVRLCKADGIKVINIVRRKEQVDLL 184 (324)
T ss_pred CcEEEEccCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 45556669999999999988888899999999987765443
|
2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin |
| >cd08241 QOR1 Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Probab=92.22 E-value=0.32 Score=48.53 Aligned_cols=40 Identities=28% Similarity=0.380 Sum_probs=35.8
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHH
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVR 215 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~ 215 (512)
.+++++|+|+++++|.+++..+...|++|+.++++.++.+
T Consensus 139 ~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~ 178 (323)
T cd08241 139 PGETVLVLGAAGGVGLAAVQLAKALGARVIAAASSEEKLA 178 (323)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCCHHHHH
Confidence 5789999999999999999999999999999998876544
|
QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic |
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=92.20 E-value=0.69 Score=44.67 Aligned_cols=39 Identities=23% Similarity=0.315 Sum_probs=34.1
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChh
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSE 212 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~ 212 (512)
++++||.|+|.|| |.+|..-++.|++.|++|++++.+..
T Consensus 5 l~l~gk~vlVvGg-G~va~rk~~~Ll~~ga~VtVvsp~~~ 43 (205)
T TIGR01470 5 ANLEGRAVLVVGG-GDVALRKARLLLKAGAQLRVIAEELE 43 (205)
T ss_pred EEcCCCeEEEECc-CHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence 4688999999997 57999999999999999999987653
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=92.08 E-value=0.79 Score=43.95 Aligned_cols=37 Identities=24% Similarity=0.480 Sum_probs=30.9
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRS 210 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~ 210 (512)
..+++.+|+|.|++ |+|.++++.|+..|. ++.+++.+
T Consensus 15 ~~L~~s~VlviG~g-glGsevak~L~~~GVg~i~lvD~d 52 (198)
T cd01485 15 NKLRSAKVLIIGAG-ALGAEIAKNLVLAGIDSITIVDHR 52 (198)
T ss_pred HHHhhCcEEEECCC-HHHHHHHHHHHHcCCCEEEEEECC
Confidence 34667788998875 699999999999997 69898876
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >PTZ00354 alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.05 E-value=0.49 Score=47.87 Aligned_cols=42 Identities=24% Similarity=0.337 Sum_probs=36.3
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHH
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMT 217 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~ 217 (512)
.+.+++|+|+++++|.++++.+...|++++++.+++++.+.+
T Consensus 140 ~~~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~ 181 (334)
T PTZ00354 140 KGQSVLIHAGASGVGTAAAQLAEKYGAATIITTSSEEKVDFC 181 (334)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 468899999999999999999999999988888887765443
|
|
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=92.04 E-value=0.14 Score=43.61 Aligned_cols=38 Identities=24% Similarity=0.294 Sum_probs=32.9
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcCh
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSS 211 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~ 211 (512)
++++||.++|.|| |.+|..-++.|++.|++|.+++...
T Consensus 3 l~l~~~~vlVvGg-G~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 3 LDLKGKRVLVVGG-GPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp E--TT-EEEEEEE-SHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred EEcCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEECCch
Confidence 4789999999998 8999999999999999999999986
|
|
| >cd05286 QOR2 Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Probab=92.04 E-value=0.38 Score=47.83 Aligned_cols=41 Identities=20% Similarity=0.247 Sum_probs=36.1
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHH
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRM 216 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~ 216 (512)
.+++++|.|+++++|.++++.+...|++|+.+++++++.+.
T Consensus 136 ~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~ 176 (320)
T cd05286 136 PGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVSSEEKAEL 176 (320)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHH
Confidence 57899999999999999999999999999999888776543
|
Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone |
| >PRK12550 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=92.04 E-value=0.38 Score=48.57 Aligned_cols=43 Identities=21% Similarity=0.240 Sum_probs=36.4
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcChhhHHHHHHH
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSGD-RVVVASRSSESVRMTVTE 220 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~~~l~~~~~e 220 (512)
+++++|.|+ ||-+++++..|++.|+ +|.+++|+.++.+++.+.
T Consensus 122 ~~~vlilGa-GGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~ 165 (272)
T PRK12550 122 DLVVALRGS-GGMAKAVAAALRDAGFTDGTIVARNEKTGKALAEL 165 (272)
T ss_pred CCeEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHH
Confidence 468899996 8999999999999997 699999999877665443
|
|
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=92.02 E-value=0.64 Score=44.59 Aligned_cols=37 Identities=22% Similarity=0.487 Sum_probs=31.1
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRS 210 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~ 210 (512)
..+++++|+|.|+ +|+|.++++.|+..|. ++.+++.+
T Consensus 17 ~~L~~s~VlIiG~-gglG~evak~La~~GVg~i~lvD~d 54 (197)
T cd01492 17 KRLRSARILLIGL-KGLGAEIAKNLVLSGIGSLTILDDR 54 (197)
T ss_pred HHHHhCcEEEEcC-CHHHHHHHHHHHHcCCCEEEEEECC
Confidence 4567788899975 6699999999999997 78888765
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >cd05282 ETR_like 2-enoyl thioester reductase-like | Back alignment and domain information |
|---|
Probab=91.94 E-value=0.43 Score=48.10 Aligned_cols=40 Identities=20% Similarity=0.232 Sum_probs=35.8
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHH
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVR 215 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~ 215 (512)
.+.+++|.|+++++|.++++.+...|++|+++.+++++.+
T Consensus 138 ~~~~vlI~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~ 177 (323)
T cd05282 138 PGDWVIQNAANSAVGRMLIQLAKLLGFKTINVVRRDEQVE 177 (323)
T ss_pred CCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecChHHHH
Confidence 5789999999999999999999999999999988876644
|
2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman |
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=91.92 E-value=0.42 Score=50.01 Aligned_cols=40 Identities=18% Similarity=0.321 Sum_probs=33.7
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcChhhHHH
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRSSESVRM 216 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~~~l~~ 216 (512)
.+++|+|+|+ +++|..+++.+...|+ +|+++++++++++.
T Consensus 191 ~g~~VlV~G~-G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~ 231 (371)
T cd08281 191 PGQSVAVVGL-GGVGLSALLGAVAAGASQVVAVDLNEDKLAL 231 (371)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCcEEEEcCCHHHHHH
Confidence 4789999985 8999999988888999 69999988877653
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=91.91 E-value=0.43 Score=39.53 Aligned_cols=36 Identities=39% Similarity=0.555 Sum_probs=31.3
Q ss_pred CCChHHHHHHHHHHHCC---CEEEEE-EcChhhHHHHHHH
Q 010380 185 STRGLGKALAREFLLSG---DRVVVA-SRSSESVRMTVTE 220 (512)
Q Consensus 185 assGIG~aiA~~La~~G---a~Vvl~-~R~~~~l~~~~~e 220 (512)
|+|.+|.++++.|++.| .+|.++ +|++++.++..++
T Consensus 6 G~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~ 45 (96)
T PF03807_consen 6 GAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKE 45 (96)
T ss_dssp STSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHh
Confidence 67899999999999999 899966 9999988776655
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase | Back alignment and domain information |
|---|
Probab=91.91 E-value=0.7 Score=49.15 Aligned_cols=42 Identities=17% Similarity=0.105 Sum_probs=34.6
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC---EEEEEEcChhhHHHH
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGD---RVVVASRSSESVRMT 217 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga---~Vvl~~R~~~~l~~~ 217 (512)
.|.+++|.||++++|...++.+...|+ +|+++++++++++.+
T Consensus 175 ~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a 219 (410)
T cd08238 175 PGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARA 219 (410)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHH
Confidence 468999999999999998887666554 799999998887644
|
L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found |
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=91.85 E-value=0.35 Score=46.61 Aligned_cols=38 Identities=26% Similarity=0.283 Sum_probs=34.5
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcCh
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSS 211 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~ 211 (512)
+++++|.|+|.|| |.+|...++.|.+.|++|++++++.
T Consensus 6 l~l~~k~vLVIGg-G~va~~ka~~Ll~~ga~V~VIs~~~ 43 (202)
T PRK06718 6 IDLSNKRVVIVGG-GKVAGRRAITLLKYGAHIVVISPEL 43 (202)
T ss_pred EEcCCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 4689999999998 8899999999999999999998763
|
|
| >cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1 | Back alignment and domain information |
|---|
Probab=91.83 E-value=0.57 Score=45.99 Aligned_cols=36 Identities=28% Similarity=0.327 Sum_probs=31.6
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEE-EEEc
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVV-VASR 209 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vv-l~~R 209 (512)
.++.+++++|-| .|.+|+.+|+.|.+.|++|+ +.+.
T Consensus 27 ~~l~~~~v~I~G-~G~VG~~~a~~L~~~g~~vv~v~D~ 63 (227)
T cd01076 27 IGLAGARVAIQG-FGNVGSHAARFLHEAGAKVVAVSDS 63 (227)
T ss_pred CCccCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEECC
Confidence 467899999998 69999999999999999999 5555
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids |
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=91.80 E-value=0.39 Score=49.87 Aligned_cols=41 Identities=17% Similarity=0.324 Sum_probs=34.0
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEEcChhhHHHH
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDR-VVVASRSSESVRMT 217 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~-Vvl~~R~~~~l~~~ 217 (512)
.|++++|.|+ +++|..+++.+...|++ |+.+++++++.+.+
T Consensus 176 ~g~~VlV~G~-g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~ 217 (358)
T TIGR03451 176 RGDSVAVIGC-GGVGDAAIAGAALAGASKIIAVDIDDRKLEWA 217 (358)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH
Confidence 4789999985 99999999988889984 88888888776543
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase | Back alignment and domain information |
|---|
Probab=91.75 E-value=0.44 Score=49.17 Aligned_cols=40 Identities=13% Similarity=0.250 Sum_probs=34.1
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcChhhHHH
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRSSESVRM 216 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~~~l~~ 216 (512)
.+++++|+|+ +++|..+++.+...|+ +|+++++++++.+.
T Consensus 172 ~g~~vlI~g~-g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~ 212 (351)
T cd08233 172 PGDTALVLGA-GPIGLLTILALKAAGASKIIVSEPSEARREL 212 (351)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHH
Confidence 5789999985 8999999999999999 78888888776543
|
(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. |
| >cd08246 crotonyl_coA_red crotonyl-CoA reductase | Back alignment and domain information |
|---|
Probab=91.60 E-value=0.57 Score=49.27 Aligned_cols=42 Identities=26% Similarity=0.287 Sum_probs=36.3
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHH
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMT 217 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~ 217 (512)
.+.+++|+|+++++|.+++..+...|++++++.+++++.+.+
T Consensus 193 ~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~~s~~~~~~~ 234 (393)
T cd08246 193 PGDNVLIWGASGGLGSMAIQLARAAGANPVAVVSSEEKAEYC 234 (393)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEeCCHHHHHHH
Confidence 478999999999999999999889999998888887766543
|
Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma |
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=91.58 E-value=0.35 Score=42.18 Aligned_cols=66 Identities=21% Similarity=0.318 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhhHHHHHHHHHH
Q 010380 188 GLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPADVQKLSNFAVN 267 (512)
Q Consensus 188 GIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~sv~~~~~~i~~ 267 (512)
|||...++-+...|++|+++++++++.+.+. + .+.. ...|-.+.+ +.+++.+
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~-~--------------------~Ga~---~~~~~~~~~----~~~~i~~ 52 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAK-E--------------------LGAD---HVIDYSDDD----FVEQIRE 52 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHH-H--------------------TTES---EEEETTTSS----HHHHHHH
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHH-h--------------------hccc---ccccccccc----ccccccc
Confidence 6899999999999999999999988765432 2 1211 234555544 3344444
Q ss_pred HcC--CCccccccccc
Q 010380 268 EFG--SIDIWINNAGT 281 (512)
Q Consensus 268 ~~g--~IDvLInnAG~ 281 (512)
..+ ++|++|.++|.
T Consensus 53 ~~~~~~~d~vid~~g~ 68 (130)
T PF00107_consen 53 LTGGRGVDVVIDCVGS 68 (130)
T ss_dssp HTTTSSEEEEEESSSS
T ss_pred ccccccceEEEEecCc
Confidence 443 69999999984
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=91.54 E-value=0.97 Score=46.13 Aligned_cols=44 Identities=18% Similarity=0.237 Sum_probs=35.4
Q ss_pred CEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcChhhHHHHHHHHH
Q 010380 178 RNVVITGSTRGLGKALAREFLLSGD-RVVVASRSSESVRMTVTELE 222 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~~~l~~~~~el~ 222 (512)
+.|.|.|+ |-+|..+|..++..|. +|++.+++++.++....++.
T Consensus 3 ~KI~VIGa-G~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~ 47 (307)
T PRK06223 3 KKISIIGA-GNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIA 47 (307)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHH
Confidence 46889998 8889999999999875 99999998887655444443
|
|
| >COG2130 Putative NADP-dependent oxidoreductases [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.54 E-value=0.37 Score=48.92 Aligned_cols=79 Identities=22% Similarity=0.294 Sum_probs=54.8
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCCh
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEP 255 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~ 255 (512)
.|.+++|++|++..|.-..+--.-+|++|+-++-.+++.+-+.+++.- . ...|-.++
T Consensus 150 ~GetvvVSaAaGaVGsvvgQiAKlkG~rVVGiaGg~eK~~~l~~~lGf-------------------D----~~idyk~~ 206 (340)
T COG2130 150 AGETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAGGAEKCDFLTEELGF-------------------D----AGIDYKAE 206 (340)
T ss_pred CCCEEEEEecccccchHHHHHHHhhCCeEEEecCCHHHHHHHHHhcCC-------------------c----eeeecCcc
Confidence 499999999999999766655556899999999998887766555411 1 12344443
Q ss_pred hhHHHHHHHHHHHcC-CCccccccccc
Q 010380 256 ADVQKLSNFAVNEFG-SIDIWINNAGT 281 (512)
Q Consensus 256 ~sv~~~~~~i~~~~g-~IDvLInnAG~ 281 (512)
+ +.+.+.+..+ .||+.+-|.|-
T Consensus 207 -d---~~~~L~~a~P~GIDvyfeNVGg 229 (340)
T COG2130 207 -D---FAQALKEACPKGIDVYFENVGG 229 (340)
T ss_pred -c---HHHHHHHHCCCCeEEEEEcCCc
Confidence 3 3333334443 69999999985
|
|
| >cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=91.50 E-value=0.6 Score=47.80 Aligned_cols=40 Identities=28% Similarity=0.279 Sum_probs=36.1
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHH
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVR 215 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~ 215 (512)
.+.+++|.|+++++|.++++.+...|++|+.+.+++++.+
T Consensus 165 ~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~ 204 (341)
T cd08297 165 PGDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDVGDEKLE 204 (341)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHH
Confidence 4789999999999999999999999999999999987654
|
These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha |
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=91.48 E-value=1.3 Score=46.94 Aligned_cols=117 Identities=15% Similarity=0.143 Sum_probs=72.4
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-E----EEE----EEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEE
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSGD-R----VVV----ASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAG 247 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~Ga-~----Vvl----~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~ 247 (512)
+=.|.|+|++|.+|..+|..|+..|. . |++ +++++++++...-+|.+.... ...++..
T Consensus 44 p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~-------------~~~~v~i 110 (387)
T TIGR01757 44 TVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYP-------------LLREVSI 110 (387)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhh-------------hcCceEE
Confidence 45789999999999999999998883 3 444 488888888888777663210 0012211
Q ss_pred EEccCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCC-CCCe
Q 010380 248 IACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQP-KGGH 326 (512)
Q Consensus 248 v~~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~-~~g~ 326 (512)
. . .+.+ .+..-|++|..||... .+ ..+. ...++.|.. +.+...+.+.+.. ..+.
T Consensus 111 ~-~--~~y~-----------~~kdaDIVVitAG~pr--kp--g~tR---~dll~~N~~----I~k~i~~~I~~~a~~~~i 165 (387)
T TIGR01757 111 G-I--DPYE-----------VFEDADWALLIGAKPR--GP--GMER---ADLLDINGQ----IFADQGKALNAVASKNCK 165 (387)
T ss_pred e-c--CCHH-----------HhCCCCEEEECCCCCC--CC--CCCH---HHHHHHHHH----HHHHHHHHHHHhCCCCeE
Confidence 1 1 1212 2346899999999853 22 2232 345555554 4555666666532 4566
Q ss_pred EEeec
Q 010380 327 IFNMD 331 (512)
Q Consensus 327 IV~vS 331 (512)
||++|
T Consensus 166 viVVs 170 (387)
T TIGR01757 166 VLVVG 170 (387)
T ss_pred EEEcC
Confidence 77665
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like | Back alignment and domain information |
|---|
Probab=91.37 E-value=1.1 Score=44.29 Aligned_cols=30 Identities=27% Similarity=0.488 Sum_probs=26.3
Q ss_pred EEEECCCChHHHHHHHHHHHCCC-EEEEEEcC
Q 010380 180 VVITGSTRGLGKALAREFLLSGD-RVVVASRS 210 (512)
Q Consensus 180 vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~ 210 (512)
|+|.| .||+|.++++.|+..|. ++.+++.+
T Consensus 2 VlvvG-~GGlG~eilk~La~~Gvg~i~ivD~D 32 (234)
T cd01484 2 VLLVG-AGGIGCELLKNLALMGFGQIHVIDMD 32 (234)
T ss_pred EEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 56777 67999999999999997 79999886
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou |
| >cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1 | Back alignment and domain information |
|---|
Probab=91.32 E-value=0.73 Score=47.22 Aligned_cols=35 Identities=20% Similarity=0.330 Sum_probs=31.7
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcC
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRS 210 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~ 210 (512)
.|.+++|+|+++++|.++++.....|++|+.+.++
T Consensus 162 ~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~ 196 (350)
T cd08248 162 AGKRVLILGGSGGVGTFAIQLLKAWGAHVTTTCST 196 (350)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCc
Confidence 48999999999999999999999999998888764
|
Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. |
| >TIGR01751 crot-CoA-red crotonyl-CoA reductase | Back alignment and domain information |
|---|
Probab=91.21 E-value=0.69 Score=48.91 Aligned_cols=40 Identities=28% Similarity=0.298 Sum_probs=34.8
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHH
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVR 215 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~ 215 (512)
.+.+++|+|+++++|.++++.+...|++|+++.++.++.+
T Consensus 189 ~g~~vlV~Ga~g~vG~~ai~~ak~~G~~vi~~~~~~~~~~ 228 (398)
T TIGR01751 189 PGDNVLIWGAAGGLGSYATQLARAGGGNPVAVVSSPEKAE 228 (398)
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHcCCeEEEEcCCHHHHH
Confidence 4789999999999999999999899999888888776543
|
The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae. |
| >cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH) | Back alignment and domain information |
|---|
Probab=91.14 E-value=0.86 Score=47.20 Aligned_cols=39 Identities=31% Similarity=0.400 Sum_probs=33.7
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcChhhHH
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRSSESVR 215 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~~~l~ 215 (512)
.+++++|+| ++++|.++++.+...|+ +|+++++++++.+
T Consensus 177 ~g~~vlI~g-~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~ 216 (361)
T cd08231 177 AGDTVVVQG-AGPLGLYAVAAAKLAGARRVIVIDGSPERLE 216 (361)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEcCCHHHHH
Confidence 688999997 59999999998889999 9999988877654
|
This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino |
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=91.12 E-value=0.45 Score=48.65 Aligned_cols=44 Identities=20% Similarity=0.252 Sum_probs=39.0
Q ss_pred cCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHH
Q 010380 172 HCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVR 215 (512)
Q Consensus 172 ~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~ 215 (512)
..++.||+|.|.|.++-+|+.+|..|.++|++|.++.|+...++
T Consensus 154 ~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~~l~ 197 (301)
T PRK14194 154 CGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRSTDAK 197 (301)
T ss_pred CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCCCHH
Confidence 45889999999999999999999999999999999977765443
|
|
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.10 E-value=1.8 Score=45.01 Aligned_cols=91 Identities=14% Similarity=0.139 Sum_probs=57.5
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHH---HHHHHHhhhhhhcCCCCcccccCceEEEEE
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVT---ELEENLKEGMMAAGGSSKKNLVHAKVAGIA 249 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~---el~~~~~~~~~~~g~~~~~~~~g~~v~~v~ 249 (512)
..+.|+++.|.|. |.||.++|+.|...|++|++.+|+++....... .+.+.. ....+..+.
T Consensus 142 ~~l~g~~VgIIG~-G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell---------------~~aDiVil~ 205 (330)
T PRK12480 142 KPVKNMTVAIIGT-GRIGAATAKIYAGFGATITAYDAYPNKDLDFLTYKDSVKEAI---------------KDADIISLH 205 (330)
T ss_pred cccCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCChhHhhhhhhccCCHHHHH---------------hcCCEEEEe
Confidence 3689999999986 679999999999999999999998654322111 122211 234566666
Q ss_pred ccCCChhhHHHHHH-HHHHHcCCCcccccccccC
Q 010380 250 CDVCEPADVQKLSN-FAVNEFGSIDIWINNAGTN 282 (512)
Q Consensus 250 ~Dltd~~sv~~~~~-~i~~~~g~IDvLInnAG~~ 282 (512)
+-.+. +...++. ...+.. +.+.++-|.|.+
T Consensus 206 lP~t~--~t~~li~~~~l~~m-k~gavlIN~aRG 236 (330)
T PRK12480 206 VPANK--ESYHLFDKAMFDHV-KKGAILVNAARG 236 (330)
T ss_pred CCCcH--HHHHHHhHHHHhcC-CCCcEEEEcCCc
Confidence 65554 2333333 333332 456777777754
|
|
| >cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=91.09 E-value=0.7 Score=48.18 Aligned_cols=41 Identities=12% Similarity=0.194 Sum_probs=34.2
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcChhhHHHH
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRSSESVRMT 217 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~~~l~~~ 217 (512)
.|.+++|.|+ +++|..+++.+...|+ +|+.+++++++.+.+
T Consensus 184 ~g~~vlV~G~-g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~ 225 (365)
T cd08277 184 PGSTVAVFGL-GAVGLSAIMGAKIAGASRIIGVDINEDKFEKA 225 (365)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHH
Confidence 5789999975 9999999998888998 799999987776543
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i |
| >PRK14851 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=90.99 E-value=0.92 Score=51.62 Aligned_cols=37 Identities=22% Similarity=0.284 Sum_probs=32.1
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRS 210 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~ 210 (512)
.++++++|+|.| .||+|..++..|+..|. ++.+++.+
T Consensus 39 ~kL~~~~VlIvG-~GGlGs~va~~Lar~GVG~l~LvD~D 76 (679)
T PRK14851 39 ERLAEAKVAIPG-MGGVGGVHLITMVRTGIGRFHIADFD 76 (679)
T ss_pred HHHhcCeEEEEC-cCHHHHHHHHHHHHhCCCeEEEEcCC
Confidence 457889999999 57999999999999997 78888864
|
|
| >PLN02827 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=90.95 E-value=0.7 Score=48.63 Aligned_cols=39 Identities=23% Similarity=0.287 Sum_probs=32.3
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEEcChhhHH
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDR-VVVASRSSESVR 215 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~-Vvl~~R~~~~l~ 215 (512)
.|++++|.|+ +++|..+++.+...|++ |+++++++++.+
T Consensus 193 ~g~~VlV~G~-G~vG~~~iqlak~~G~~~vi~~~~~~~~~~ 232 (378)
T PLN02827 193 KGSSVVIFGL-GTVGLSVAQGAKLRGASQIIGVDINPEKAE 232 (378)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCHHHHH
Confidence 5889999985 99999999988889984 777777776654
|
|
| >cd08290 ETR 2-enoyl thioester reductase (ETR) | Back alignment and domain information |
|---|
Probab=90.91 E-value=0.85 Score=46.60 Aligned_cols=37 Identities=19% Similarity=0.236 Sum_probs=33.3
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChh
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSE 212 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~ 212 (512)
.+++++|.|+++++|.++++.+...|++|+++.++.+
T Consensus 146 ~g~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~ 182 (341)
T cd08290 146 PGDWVIQNGANSAVGQAVIQLAKLLGIKTINVVRDRP 182 (341)
T ss_pred CCCEEEEccchhHHHHHHHHHHHHcCCeEEEEEcCCC
Confidence 5789999999999999999999999999988888764
|
2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f |
| >PRK07877 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=90.82 E-value=0.73 Score=52.68 Aligned_cols=37 Identities=19% Similarity=0.299 Sum_probs=32.4
Q ss_pred cCCCCCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEEcC
Q 010380 172 HCKAGPRNVVITGSTRGLGKALAREFLLSGD--RVVVASRS 210 (512)
Q Consensus 172 ~~~l~gk~vLVTGassGIG~aiA~~La~~Ga--~Vvl~~R~ 210 (512)
..++++++|+|.|+ |+|..+|..|+..|. ++++++.+
T Consensus 102 Q~~L~~~~V~IvG~--GlGs~~a~~LaraGvvG~l~lvD~D 140 (722)
T PRK07877 102 QERLGRLRIGVVGL--SVGHAIAHTLAAEGLCGELRLADFD 140 (722)
T ss_pred HHHHhcCCEEEEEe--cHHHHHHHHHHHccCCCeEEEEcCC
Confidence 45678899999999 499999999999994 89999875
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=90.78 E-value=2.1 Score=43.45 Aligned_cols=48 Identities=21% Similarity=0.310 Sum_probs=40.8
Q ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHh
Q 010380 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLK 226 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~ 226 (512)
++|.|.|+ |-+|..+|..|+..|++|++.+++++.++...+.+.+.+.
T Consensus 6 ~~V~ViGa-G~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~ 53 (286)
T PRK07819 6 QRVGVVGA-GQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLE 53 (286)
T ss_pred cEEEEEcc-cHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHH
Confidence 35777776 7899999999999999999999999999887777766544
|
|
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=90.76 E-value=1.4 Score=44.99 Aligned_cols=44 Identities=20% Similarity=0.249 Sum_probs=37.1
Q ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHH
Q 010380 179 NVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEE 223 (512)
Q Consensus 179 ~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~ 223 (512)
+|.|.| .|-+|.++|..|+++|++|++.+|+++..+...+.+..
T Consensus 4 ~V~VIG-~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~ 47 (308)
T PRK06129 4 SVAIIG-AGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAG 47 (308)
T ss_pred EEEEEC-ccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHH
Confidence 578898 67899999999999999999999998877766555443
|
|
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=90.73 E-value=0.45 Score=44.15 Aligned_cols=43 Identities=23% Similarity=0.385 Sum_probs=34.3
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHH
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVR 215 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~ 215 (512)
.++.||+++|.|.|.-+|+-++..|.++|+.|.++....+.++
T Consensus 32 ~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l~ 74 (160)
T PF02882_consen 32 IDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNLQ 74 (160)
T ss_dssp -STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSHH
T ss_pred CCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCccc
Confidence 4689999999999999999999999999999999887765544
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=90.71 E-value=1 Score=47.18 Aligned_cols=41 Identities=12% Similarity=0.221 Sum_probs=34.5
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcChhhHHHH
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRSSESVRMT 217 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~~~l~~~ 217 (512)
.+.+++|.| .+++|.++++.+...|+ +|+++++++++.+.+
T Consensus 190 ~g~~VlV~G-~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~a 231 (373)
T cd08299 190 PGSTCAVFG-LGGVGLSAIMGCKAAGASRIIAVDINKDKFAKA 231 (373)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH
Confidence 477899996 58999999999999998 799999988766543
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically |
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=90.70 E-value=2.6 Score=42.61 Aligned_cols=45 Identities=20% Similarity=0.379 Sum_probs=38.4
Q ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHH
Q 010380 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEE 223 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~ 223 (512)
++|.|.|+ |-+|..+|..|++.|++|++.+++++.++...+.+..
T Consensus 2 ~~V~VIG~-G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~ 46 (288)
T PRK09260 2 EKLVVVGA-GVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIAS 46 (288)
T ss_pred cEEEEECc-cHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHH
Confidence 46788887 7899999999999999999999999988877665443
|
|
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=90.66 E-value=3.4 Score=42.09 Aligned_cols=114 Identities=14% Similarity=0.212 Sum_probs=65.3
Q ss_pred EEEECCCChHHHHHHHHHHHCCC-EEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhhH
Q 010380 180 VVITGSTRGLGKALAREFLLSGD-RVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPADV 258 (512)
Q Consensus 180 vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~sv 258 (512)
|.|.|+ |.+|..+|..|+.+|. +|++.+++++.++...-++.+.... ...... +.. -+|.++
T Consensus 1 I~IIGa-G~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~-------------~~~~~~-I~~-t~d~~~- 63 (300)
T cd01339 1 ISIIGA-GNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPI-------------LGSDTK-VTG-TNDYED- 63 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhh-------------cCCCeE-EEE-cCCHHH-
Confidence 368898 8899999999998876 9999999987654333333321100 111111 111 012111
Q ss_pred HHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeec
Q 010380 259 QKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD 331 (512)
Q Consensus 259 ~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vS 331 (512)
+..-|++|.++|... . ...+.. ..+..| +-+.+.+.+.+.+....+.+|+++
T Consensus 64 ----------l~dADiVIit~g~p~--~--~~~~r~---e~~~~n----~~i~~~i~~~i~~~~p~~~iIv~s 115 (300)
T cd01339 64 ----------IAGSDVVVITAGIPR--K--PGMSRD---DLLGTN----AKIVKEVAENIKKYAPNAIVIVVT 115 (300)
T ss_pred ----------hCCCCEEEEecCCCC--C--cCCCHH---HHHHHH----HHHHHHHHHHHHHHCCCeEEEEec
Confidence 136799999999753 2 122222 233334 345666677776665556667765
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=90.59 E-value=3 Score=43.65 Aligned_cols=38 Identities=24% Similarity=0.248 Sum_probs=34.7
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcCh
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSS 211 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~ 211 (512)
..+.||++.|.|- |.||+++|+.|...|++|+..+|+.
T Consensus 155 ~~l~gktvGIiG~-G~IG~~vA~~l~afG~~V~~~dr~~ 192 (347)
T PLN02928 155 DTLFGKTVFILGY-GAIGIELAKRLRPFGVKLLATRRSW 192 (347)
T ss_pred cCCCCCEEEEECC-CHHHHHHHHHHhhCCCEEEEECCCC
Confidence 4689999999996 8999999999999999999999874
|
|
| >cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=90.49 E-value=0.88 Score=46.59 Aligned_cols=40 Identities=28% Similarity=0.308 Sum_probs=34.9
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHH
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRM 216 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~ 216 (512)
.+++++|.| ++++|.++++.+...|++|+.+++++++.+.
T Consensus 163 ~~~~vlV~g-~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~ 202 (333)
T cd08296 163 PGDLVAVQG-IGGLGHLAVQYAAKMGFRTVAISRGSDKADL 202 (333)
T ss_pred CCCEEEEEC-CcHHHHHHHHHHHHCCCeEEEEeCChHHHHH
Confidence 578999999 7999999999999999999999998776543
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal |
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=90.49 E-value=0.64 Score=47.22 Aligned_cols=42 Identities=19% Similarity=0.338 Sum_probs=36.9
Q ss_pred cCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhh
Q 010380 172 HCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSES 213 (512)
Q Consensus 172 ~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~ 213 (512)
..+++||+++|.|+++=.|+.++..|.++|++|.++.|....
T Consensus 154 ~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t~~ 195 (283)
T PRK14192 154 NIELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSRTQN 195 (283)
T ss_pred CCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCchh
Confidence 357899999999998889999999999999999999885443
|
|
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=90.38 E-value=0.72 Score=42.87 Aligned_cols=42 Identities=26% Similarity=0.323 Sum_probs=32.2
Q ss_pred cCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhH
Q 010380 172 HCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESV 214 (512)
Q Consensus 172 ~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l 214 (512)
...+.||+++|.|= |-+|+.+|+.|...|++|+++..++-++
T Consensus 18 ~~~l~Gk~vvV~GY-G~vG~g~A~~lr~~Ga~V~V~e~DPi~a 59 (162)
T PF00670_consen 18 NLMLAGKRVVVIGY-GKVGKGIARALRGLGARVTVTEIDPIRA 59 (162)
T ss_dssp -S--TTSEEEEE---SHHHHHHHHHHHHTT-EEEEE-SSHHHH
T ss_pred ceeeCCCEEEEeCC-CcccHHHHHHHhhCCCEEEEEECChHHH
Confidence 46789999999994 7899999999999999999999998654
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >TIGR01771 L-LDH-NAD L-lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=90.36 E-value=3.5 Score=42.22 Aligned_cols=111 Identities=14% Similarity=0.165 Sum_probs=70.1
Q ss_pred ECCCChHHHHHHHHHHHCCC--EEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhhHHH
Q 010380 183 TGSTRGLGKALAREFLLSGD--RVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPADVQK 260 (512)
Q Consensus 183 TGassGIG~aiA~~La~~Ga--~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~sv~~ 260 (512)
.| .|.+|..+|..|+.+|. ++++++++++.++....++.....- ....+.... .|.+
T Consensus 2 IG-aG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~-------------~~~~~~i~~---~~~~---- 60 (299)
T TIGR01771 2 IG-AGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASF-------------LPTPKKIRS---GDYS---- 60 (299)
T ss_pred CC-cCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcc-------------cCCCeEEec---CCHH----
Confidence 45 48999999999998884 7999999998888877777653210 111222221 2222
Q ss_pred HHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 261 LSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 261 ~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
.+..-|++|..||... .+ ..+. ...++.|.. +.+.+.+.+.+....+.++++|-
T Consensus 61 -------~~~daDivVitag~~r--k~--g~~R---~dll~~N~~----i~~~~~~~i~~~~p~~~vivvsN 114 (299)
T TIGR01771 61 -------DCKDADLVVITAGAPQ--KP--GETR---LELVGRNVR----IMKSIVPEVVKSGFDGIFLVATN 114 (299)
T ss_pred -------HHCCCCEEEECCCCCC--CC--CCCH---HHHHHHHHH----HHHHHHHHHHHhCCCeEEEEeCC
Confidence 2346799999999853 22 2333 334555544 45555666665556677888764
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases. |
| >PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=90.34 E-value=0.83 Score=46.36 Aligned_cols=43 Identities=30% Similarity=0.411 Sum_probs=37.4
Q ss_pred cCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhH
Q 010380 172 HCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESV 214 (512)
Q Consensus 172 ~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l 214 (512)
..++.||+|+|.|.|.-+|+-+|..|.++|+.|.++......+
T Consensus 152 ~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t~~l 194 (285)
T PRK14191 152 HIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILTKDL 194 (285)
T ss_pred CCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCcHHH
Confidence 3578999999999999999999999999999999886554433
|
|
| >PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated | Back alignment and domain information |
|---|
Probab=90.31 E-value=1.2 Score=47.39 Aligned_cols=37 Identities=16% Similarity=0.222 Sum_probs=31.7
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRS 210 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~ 210 (512)
.++...+|+|.|+ ||+|..+|+.|+..|. ++.+++.+
T Consensus 38 ~~L~~~~VlviG~-GGlGs~va~~La~~Gvg~i~lvD~D 75 (392)
T PRK07878 38 KRLKNARVLVIGA-GGLGSPTLLYLAAAGVGTLGIVEFD 75 (392)
T ss_pred HHHhcCCEEEECC-CHHHHHHHHHHHHcCCCeEEEECCC
Confidence 3567788999986 6999999999999997 78898875
|
|
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=90.29 E-value=0.62 Score=50.02 Aligned_cols=41 Identities=24% Similarity=0.303 Sum_probs=36.9
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhH
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESV 214 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l 214 (512)
..+.||+++|.|. |.||+.+|+.|...|++|+++++++.+.
T Consensus 208 ~~l~Gk~VlViG~-G~IG~~vA~~lr~~Ga~ViV~d~dp~ra 248 (425)
T PRK05476 208 VLIAGKVVVVAGY-GDVGKGCAQRLRGLGARVIVTEVDPICA 248 (425)
T ss_pred CCCCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCCchhh
Confidence 3578999999997 6899999999999999999999987664
|
|
| >TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p | Back alignment and domain information |
|---|
Probab=90.29 E-value=0.89 Score=50.95 Aligned_cols=37 Identities=19% Similarity=0.253 Sum_probs=32.1
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRS 210 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~ 210 (512)
.++++.+|+|.|+ ||+|-.+|+.|+..|. ++++++.+
T Consensus 334 ekL~~~kVLIvGa-GGLGs~VA~~La~~GVg~ItlVD~D 371 (664)
T TIGR01381 334 ERYSQLKVLLLGA-GTLGCNVARCLIGWGVRHITFVDNG 371 (664)
T ss_pred HHHhcCeEEEECC-cHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 3567889999997 7999999999999997 79998864
|
This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy. |
| >PRK07411 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=90.27 E-value=0.99 Score=47.98 Aligned_cols=37 Identities=22% Similarity=0.302 Sum_probs=32.1
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRS 210 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~ 210 (512)
.+++..+|+|.|+ ||+|..+++.|+..|. ++.+++.+
T Consensus 34 ~~L~~~~VlivG~-GGlG~~va~~La~~Gvg~l~lvD~D 71 (390)
T PRK07411 34 KRLKAASVLCIGT-GGLGSPLLLYLAAAGIGRIGIVDFD 71 (390)
T ss_pred HHHhcCcEEEECC-CHHHHHHHHHHHHcCCCEEEEECCC
Confidence 4577888999986 6999999999999997 79998875
|
|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.23 E-value=0.6 Score=50.39 Aligned_cols=38 Identities=34% Similarity=0.455 Sum_probs=33.9
Q ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHH
Q 010380 179 NVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRM 216 (512)
Q Consensus 179 ~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~ 216 (512)
++.|.||.|++|.++|+.|.+.|++|++.+|+++...+
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~ 39 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKE 39 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHH
Confidence 57999999999999999999999999999999776543
|
|
| >COG3007 Uncharacterized paraquat-inducible protein B [Function unknown] | Back alignment and domain information |
|---|
Probab=90.01 E-value=1.3 Score=44.80 Aligned_cols=192 Identities=16% Similarity=0.174 Sum_probs=103.3
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHH-CCCEEEEEEcC-------hhhH----HHHHHHHHHHHhhhhhhcCCCCcccc
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLL-SGDRVVVASRS-------SESV----RMTVTELEENLKEGMMAAGGSSKKNL 240 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~-~Ga~Vvl~~R~-------~~~l----~~~~~el~~~~~~~~~~~g~~~~~~~ 240 (512)
.+-.+|.|||.|+|+|.|++.--..+= .|++-+-+... +... ....++..++
T Consensus 37 ~~ngPKkVLviGaSsGyGLa~RIsaaFG~gAdTiGVffE~pgte~~~gtagwyn~~~f~~~A~~---------------- 100 (398)
T COG3007 37 IKNGPKKVLVIGASSGYGLAARISAAFGPGADTIGVFFERPGTERKPGTAGWYNNAAFKKFAKQ---------------- 100 (398)
T ss_pred ccCCCceEEEEecCCcccHHHHHHHHhCCCCceeeEEeecCCccCCCcchhhhHHHHHHHHHHh----------------
Confidence 344689999999999999985444331 45654444321 1100 1111222111
Q ss_pred cCceEEEEEccCCChhhHHHHHHHHHHHcCCCcccccccccCCCC------------CC---------------------
Q 010380 241 VHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGF------------KP--------------------- 287 (512)
Q Consensus 241 ~g~~v~~v~~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~------------~~--------------------- 287 (512)
.|--..-+..|.-+.+--+..++.|+..+|.+|.+|+.-...... .|
T Consensus 101 kGlyAksingDaFS~e~k~kvIe~Ik~~~g~vDlvvYSlAsp~Rk~pktgev~~SalKpIg~a~~~~~ldt~kd~i~e~~ 180 (398)
T COG3007 101 KGLYAKSINGDAFSDEMKQKVIEAIKQDFGKVDLVVYSLASPRRKHPKTGEVFRSALKPIGEAVSGRTLDTEKDVIIEAT 180 (398)
T ss_pred cCceeeecccchhhHHHHHHHHHHHHHhhccccEEEEeccCccccCCCcchhhHhhhcchhhhccccccccccceeeeee
Confidence 234455677888888888888999999999999998765432100 01
Q ss_pred CcCCCHHHHHHHHHhhhhhHHH-HHHHHHHHHHhCCCCCeEEeecCCCCC-CCCCCCcchhhHHHHHHHHHHHHHHHHhC
Q 010380 288 LLQFTNEEIEQIVSTNLVGSIL-CTREAMRVMRDQPKGGHIFNMDGAGSG-GSSTPLTAVYGSTKCGLRQLQASLFKESK 365 (512)
Q Consensus 288 ~~~~s~e~~~~~~~vNv~g~~~-l~k~~lp~m~~~~~~g~IV~vSS~~a~-~~~~p~~~~Y~aSKaAl~~l~~sLa~El~ 365 (512)
++..+.++++.+..+.=---+. -+.+++..-.-. .+..-|..|=.+.- ..+....+.-+.+|.=|+.-+..+...|+
T Consensus 181 lepAseqEI~~Tv~VMGGeDWq~WidaLl~advla-eg~kTiAfsYiG~~iT~~IYw~GtiG~AK~DLd~~~~~inekLa 259 (398)
T COG3007 181 LEPASEQEIADTVAVMGGEDWQMWIDALLEADVLA-EGAKTIAFSYIGEKITHPIYWDGTIGRAKKDLDQKSLAINEKLA 259 (398)
T ss_pred cccccHHHHHHHHHhhCcchHHHHHHHHHhccccc-cCceEEEEEecCCccccceeeccccchhhhcHHHHHHHHHHHHH
Confidence 1122344555444432111111 122222110001 23444555433211 12333446789999999999999999988
Q ss_pred CCCeEEEEEeCCcccC
Q 010380 366 RSKVGVHTASPGMVLT 381 (512)
Q Consensus 366 ~~GIrVn~V~PG~V~T 381 (512)
..|=+.+...--.|-|
T Consensus 260 ~~gG~A~vsVlKavVT 275 (398)
T COG3007 260 ALGGGARVSVLKAVVT 275 (398)
T ss_pred hcCCCeeeeehHHHHh
Confidence 7654444333333333
|
|
| >PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=89.89 E-value=0.42 Score=44.45 Aligned_cols=42 Identities=31% Similarity=0.385 Sum_probs=33.0
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHH
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRM 216 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~ 216 (512)
.+.+.+++||| +|-.|...++.|...|++|+..+.+.+.+++
T Consensus 17 ~~~p~~vvv~G-~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~ 58 (168)
T PF01262_consen 17 GVPPAKVVVTG-AGRVGQGAAEIAKGLGAEVVVPDERPERLRQ 58 (168)
T ss_dssp EE-T-EEEEES-TSHHHHHHHHHHHHTT-EEEEEESSHHHHHH
T ss_pred CCCCeEEEEEC-CCHHHHHHHHHHhHCCCEEEeccCCHHHHHh
Confidence 45678899999 5789999999999999999999998766543
|
4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A .... |
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=89.88 E-value=2.9 Score=43.11 Aligned_cols=107 Identities=15% Similarity=0.094 Sum_probs=63.9
Q ss_pred cCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHH---H--HHHHHHHHhhhhhhcCCCCcccccCceEE
Q 010380 172 HCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRM---T--VTELEENLKEGMMAAGGSSKKNLVHAKVA 246 (512)
Q Consensus 172 ~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~---~--~~el~~~~~~~~~~~g~~~~~~~~g~~v~ 246 (512)
...+.||++.|.| .|.||+++|+.|...|++|+..+|..+.... . ..++.+.+ ....+.
T Consensus 131 ~~~l~g~tvgIvG-~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~~~~~~~l~e~l---------------~~aDvv 194 (312)
T PRK15469 131 EYHREDFTIGILG-AGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQSFAGREELSAFL---------------SQTRVL 194 (312)
T ss_pred CCCcCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCceeecccccHHHHH---------------hcCCEE
Confidence 3468899999998 4789999999999999999999886543211 0 11222221 124555
Q ss_pred EEEccCCChhhHHHHHHH-HHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhh
Q 010380 247 GIACDVCEPADVQKLSNF-AVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTN 303 (512)
Q Consensus 247 ~v~~Dltd~~sv~~~~~~-i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vN 303 (512)
.+.+-++ ++.+.++++ ..+.. +.+.++.|.|... + ++.+++.+.++.+
T Consensus 195 v~~lPlt--~~T~~li~~~~l~~m-k~ga~lIN~aRG~----v--Vde~aL~~aL~~g 243 (312)
T PRK15469 195 INLLPNT--PETVGIINQQLLEQL-PDGAYLLNLARGV----H--VVEDDLLAALDSG 243 (312)
T ss_pred EECCCCC--HHHHHHhHHHHHhcC-CCCcEEEECCCcc----c--cCHHHHHHHHhcC
Confidence 5555544 345555542 33333 3466666666533 2 3555555555544
|
|
| >PRK14030 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.84 E-value=5.4 Score=43.06 Aligned_cols=35 Identities=23% Similarity=0.212 Sum_probs=31.7
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEE
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVAS 208 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~ 208 (512)
.+++|++|+|.| .|.+|..+|+.|.+.|++|+.++
T Consensus 224 ~~l~g~~vaIQG-fGnVG~~aA~~L~e~GakvVavS 258 (445)
T PRK14030 224 IDIKGKTVAISG-FGNVAWGAATKATELGAKVVTIS 258 (445)
T ss_pred CCcCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEE
Confidence 478999999999 69999999999999999999853
|
|
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=89.66 E-value=1.4 Score=45.76 Aligned_cols=40 Identities=25% Similarity=0.280 Sum_probs=35.8
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhh
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSES 213 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~ 213 (512)
..+.||++.|.|- |.||+++|+.|...|++|+..+|+...
T Consensus 146 ~~L~gktvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~~ 185 (333)
T PRK13243 146 YDVYGKTIGIIGF-GRIGQAVARRAKGFGMRILYYSRTRKP 185 (333)
T ss_pred cCCCCCEEEEECc-CHHHHHHHHHHHHCCCEEEEECCCCCh
Confidence 4689999999997 899999999999999999999987543
|
|
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=89.65 E-value=0.8 Score=50.95 Aligned_cols=60 Identities=18% Similarity=0.238 Sum_probs=46.6
Q ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhh
Q 010380 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPAD 257 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~s 257 (512)
.+++|.|+ +.+|+.++++|.++|.+|++++.|+++.++.. + .....+..|.+|++.
T Consensus 418 ~hiiI~G~-G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~----~-------------------~g~~~i~GD~~~~~~ 473 (558)
T PRK10669 418 NHALLVGY-GRVGSLLGEKLLAAGIPLVVIETSRTRVDELR----E-------------------RGIRAVLGNAANEEI 473 (558)
T ss_pred CCEEEECC-ChHHHHHHHHHHHCCCCEEEEECCHHHHHHHH----H-------------------CCCeEEEcCCCCHHH
Confidence 45677775 67999999999999999999999988765442 2 135568899999887
Q ss_pred HHHH
Q 010380 258 VQKL 261 (512)
Q Consensus 258 v~~~ 261 (512)
.+++
T Consensus 474 L~~a 477 (558)
T PRK10669 474 MQLA 477 (558)
T ss_pred HHhc
Confidence 6653
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=89.63 E-value=8.3 Score=36.83 Aligned_cols=78 Identities=24% Similarity=0.291 Sum_probs=57.9
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEcc
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACD 251 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~D 251 (512)
-++.||+|+=-|+..|+ ++...+-.|+ +|+.++.+++.++.+.+...+ ...++.++.+|
T Consensus 42 g~l~g~~V~DlG~GTG~---La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~-----------------l~g~v~f~~~d 101 (198)
T COG2263 42 GDLEGKTVLDLGAGTGI---LAIGAALLGASRVLAVDIDPEALEIARANAEE-----------------LLGDVEFVVAD 101 (198)
T ss_pred CCcCCCEEEEcCCCcCH---HHHHHHhcCCcEEEEEecCHHHHHHHHHHHHh-----------------hCCceEEEEcc
Confidence 47889999999988775 2333344685 799999999988776666554 35689999999
Q ss_pred CCChhhHHHHHHHHHHHcCCCcccccccccCC
Q 010380 252 VCEPADVQKLSNFAVNEFGSIDIWINNAGTNK 283 (512)
Q Consensus 252 ltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~ 283 (512)
+++.. ++.|.+|-|.-.+.
T Consensus 102 v~~~~-------------~~~dtvimNPPFG~ 120 (198)
T COG2263 102 VSDFR-------------GKFDTVIMNPPFGS 120 (198)
T ss_pred hhhcC-------------CccceEEECCCCcc
Confidence 98754 47888888876543
|
|
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=89.63 E-value=1.9 Score=40.37 Aligned_cols=44 Identities=27% Similarity=0.269 Sum_probs=36.9
Q ss_pred cccCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhH
Q 010380 170 EEHCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESV 214 (512)
Q Consensus 170 ~~~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l 214 (512)
.....+.||++.|.|. |.||+++|+.|..-|++|+..+|+....
T Consensus 29 ~~~~~l~g~tvgIiG~-G~IG~~vA~~l~~fG~~V~~~d~~~~~~ 72 (178)
T PF02826_consen 29 FPGRELRGKTVGIIGY-GRIGRAVARRLKAFGMRVIGYDRSPKPE 72 (178)
T ss_dssp TTBS-STTSEEEEEST-SHHHHHHHHHHHHTT-EEEEEESSCHHH
T ss_pred CCccccCCCEEEEEEE-cCCcCeEeeeeecCCceeEEecccCChh
Confidence 3355789999999986 8999999999999999999999997754
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=89.62 E-value=0.82 Score=47.06 Aligned_cols=39 Identities=23% Similarity=0.222 Sum_probs=33.8
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHH
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVR 215 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~ 215 (512)
.|++++|+|+ +++|..+++.+...|++|+.+++++++.+
T Consensus 165 ~g~~VlV~G~-g~iG~~a~~~a~~~G~~vi~~~~~~~~~~ 203 (329)
T TIGR02822 165 PGGRLGLYGF-GGSAHLTAQVALAQGATVHVMTRGAAARR 203 (329)
T ss_pred CCCEEEEEcC-CHHHHHHHHHHHHCCCeEEEEeCChHHHH
Confidence 4789999997 89999988877788999999999988754
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.55 E-value=0.89 Score=46.84 Aligned_cols=40 Identities=23% Similarity=0.322 Sum_probs=33.3
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEEcChhhHHH
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDR-VVVASRSSESVRM 216 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~-Vvl~~R~~~~l~~ 216 (512)
.+++++|+| .+++|..+++.+...|++ |+.+++++++.+.
T Consensus 160 ~g~~vlV~G-~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~ 200 (347)
T PRK10309 160 EGKNVIIIG-AGTIGLLAIQCAVALGAKSVTAIDINSEKLAL 200 (347)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEECCCHHHHHH
Confidence 578999997 599999999999999997 6778888776653
|
|
| >cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases | Back alignment and domain information |
|---|
Probab=89.40 E-value=0.88 Score=46.05 Aligned_cols=42 Identities=21% Similarity=0.316 Sum_probs=36.7
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHH
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMT 217 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~ 217 (512)
.+++++|.|+++++|.++++.+...|++|+.+.+++++.+.+
T Consensus 146 ~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~ 187 (326)
T cd08289 146 EQGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKADAADYL 187 (326)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCHHHHHHH
Confidence 468999999999999999999999999999999988765443
|
yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 512 | ||||
| 4dyv_A | 272 | Crystal Structure Of A Short-Chain DehydrogenaseRED | 8e-15 | ||
| 2hq1_A | 247 | Crystal Structure Of Orf 1438 A Putative GlucoseRIB | 3e-14 | ||
| 4dry_A | 281 | The Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Pr | 1e-13 | ||
| 2nm0_A | 253 | Crystal Structure Of Sco1815: A Beta-Ketoacyl-Acyl | 5e-13 | ||
| 2uvd_A | 246 | The Crystal Structure Of A 3-Oxoacyl-(Acyl Carrier | 1e-12 | ||
| 1vl8_A | 267 | Crystal Structure Of Gluconate 5-dehydrogenase (tm0 | 3e-12 | ||
| 2bd0_A | 244 | Chlorobium Tepidum Sepiapterin Reductase Complexed | 4e-12 | ||
| 4g81_D | 255 | Crystal Structure Of A Hexonate Dehydrogenase Ortho | 6e-12 | ||
| 3tfo_A | 264 | Crystal Structure Of A Putative 3-Oxoacyl-(Acyl-Car | 7e-12 | ||
| 1i01_A | 244 | Crystal Structure Of Beta-Ketoacyl [acyl Carrier Pr | 7e-12 | ||
| 3u5t_A | 267 | The Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Pr | 9e-12 | ||
| 3rku_A | 287 | Substrate Fingerprint And The Structure Of Nadp+ De | 2e-11 | ||
| 1k2w_A | 256 | Crystal Structure Of Sorbitol Dehydrogenase From R. | 2e-11 | ||
| 3ay7_A | 269 | Crystal Structure Of Bacillus Megaterium Glucose De | 2e-11 | ||
| 3ay6_A | 269 | Crystal Structure Of Bacillus Megaterium Glucose De | 2e-11 | ||
| 1q7c_A | 244 | The Structure Of Betaketoacyl-[acp] Reductase Y151f | 2e-11 | ||
| 3aus_A | 269 | Crystal Structure Of Bacillus Megaterium Glucose De | 2e-11 | ||
| 1edo_A | 244 | The X-Ray Structure Of Beta-Keto Acyl Carrier Prote | 4e-11 | ||
| 3sj7_A | 252 | Structure Of Beta-Ketoacetyl-Coa Reductase (Fabg) F | 5e-11 | ||
| 3v2h_A | 281 | The Crystal Structure Of D-Beta-Hydroxybutyrate Deh | 9e-11 | ||
| 4ibo_A | 271 | Crystal Structure Of A Putative Gluconate Dehydroge | 1e-10 | ||
| 3asu_A | 248 | Crystal Structure Of Serine Dehydrogenase From Esch | 1e-10 | ||
| 3r1i_A | 276 | Crystal Structure Of A Short-Chain Type Dehydrogena | 1e-10 | ||
| 4dml_A | 269 | 3-Oxoacyl-[acyl-Carrier-Protein] Reductase From Syn | 1e-10 | ||
| 1rwb_A | 261 | Cooperative Effect Of Two Surface Amino Acid Mutati | 2e-10 | ||
| 1gee_A | 261 | Crystal Structure Of Glucose Dehydrogenase Mutant Q | 2e-10 | ||
| 1gco_A | 261 | Crystal Structure Of Glucose Dehydrogenase Complexe | 2e-10 | ||
| 3rsh_A | 251 | Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)reduc | 3e-10 | ||
| 2cf2_E | 226 | Architecture Of Mammalian Fatty Acid Synthase Lengt | 3e-10 | ||
| 1g6k_A | 261 | Crystal Structure Of Glucose Dehydrogenase Mutant E | 3e-10 | ||
| 3tzh_A | 251 | Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Prote | 3e-10 | ||
| 3qiv_A | 253 | Crystal Structure Of A Putative Short-Chain Dehydro | 5e-10 | ||
| 3oec_A | 317 | Crystal Structure Of Carveol Dehydrogenase From Myc | 6e-10 | ||
| 2hsd_A | 253 | The Refined Three-Dimensional Structure Of 3alpha,2 | 7e-10 | ||
| 1hdc_A | 254 | Mechanism Of Inhibition Of 3alpha,20beta-Hydroxyste | 8e-10 | ||
| 4fn4_A | 254 | Short-chain Nad(h)-dependent Dehydrogenase/reductas | 8e-10 | ||
| 2pnf_A | 248 | Structure Of Aquifex Aeolicus Fabg 3-oxoacyl-(acyl- | 9e-10 | ||
| 3tzc_A | 251 | Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Prote | 1e-09 | ||
| 1iy8_A | 267 | Crystal Structure Of Levodione Reductase Length = 2 | 1e-09 | ||
| 3tzk_A | 251 | Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Prote | 1e-09 | ||
| 3u09_A | 251 | Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Prote | 2e-09 | ||
| 1uzl_A | 247 | Maba From Mycobacterium Tuberculosis Length = 247 | 2e-09 | ||
| 3ftp_A | 270 | Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Prote | 2e-09 | ||
| 3pk0_A | 262 | Crystal Structure Of Short-Chain DehydrogenaseREDUC | 3e-09 | ||
| 3rkr_A | 262 | Crystal Structure Of A Metagenomic Short-Chain Oxid | 4e-09 | ||
| 1ipe_A | 259 | Tropinone Reductase-Ii Complexed With Nadph Length | 4e-09 | ||
| 2ae2_A | 260 | Tropinone Reductase-Ii Complexed With Nadp+ And Pse | 4e-09 | ||
| 2zat_A | 260 | Crystal Structure Of A Mammalian Reductase Length = | 6e-09 | ||
| 1yxm_A | 303 | Crystal Structure Of Peroxisomal Trans 2-Enoyl Coa | 7e-09 | ||
| 4e3z_A | 272 | Crystal Structure Of A Oxidoreductase From Rhizobiu | 9e-09 | ||
| 3osu_A | 246 | Crystal Structure Of The 3-Oxoacyl-Acyl Carrier Pro | 1e-08 | ||
| 3is3_A | 270 | Crystal Structure Of 17beta-Hydroxysteroid Dehydrog | 1e-08 | ||
| 3i4f_A | 264 | Structure Of Putative 3-oxoacyl-reductase From Baci | 2e-08 | ||
| 1xq1_A | 266 | X-Ray Structure Of Putative Tropinone Reducatse Fro | 2e-08 | ||
| 3tjr_A | 301 | Crystal Structure Of A Rv0851c Ortholog Short Chain | 2e-08 | ||
| 3un1_A | 260 | Crystal Structure Of An Oxidoreductase From Sinorhi | 2e-08 | ||
| 3itd_A | 270 | Crystal Structure Of An Inactive 17beta-Hydroxyster | 3e-08 | ||
| 3oic_A | 258 | Crystal Structure Of Enoyl-Acp Reductases Iii (Fabl | 4e-08 | ||
| 4fgs_A | 273 | Crystal Structure Of A Probable Dehydrogenase Prote | 4e-08 | ||
| 3op4_A | 248 | Crystal Structure Of Putative 3-Ketoacyl-(Acyl-Carr | 5e-08 | ||
| 3ctm_A | 279 | Crystal Structure Of A Carbonyl Reductase From Cand | 8e-08 | ||
| 1uzm_A | 247 | Maba From Mycobacterium Tuberculosis Length = 247 | 8e-08 | ||
| 2ntn_A | 267 | Crystal Structure Of Maba-c60v/g139a/s144l Length = | 9e-08 | ||
| 4e6p_A | 259 | Crystal Structure Of A Probable Sorbitol Dehydrogen | 9e-08 | ||
| 3ioy_A | 319 | Structure Of Putative Short-Chain Dehydrogenase (Sa | 1e-07 | ||
| 2q2q_A | 255 | Structure Of D-3-Hydroxybutyrate Dehydrogenase From | 1e-07 | ||
| 3nug_A | 247 | Crystal Structure Of Wild Type Tetrameric Pyridoxal | 1e-07 | ||
| 3o38_A | 266 | Crystal Structure Of A Short Chain Dehydrogenase Fr | 1e-07 | ||
| 1ae1_A | 273 | Tropinone Reductase-I Complex With Nadp Length = 27 | 2e-07 | ||
| 2ehd_A | 234 | Crystal Structure Analysis Of Oxidoreductase Length | 2e-07 | ||
| 4iqg_C | 271 | Crystal Structure Of Bpro0239 Oxidoreductase From P | 2e-07 | ||
| 3enn_A | 249 | 2.1a Crystal Structure Of GlucoseRIBITOL DEHYDROGEN | 3e-07 | ||
| 3emk_A | 246 | 2.5a Crystal Structure Of GlucoseRIBITOL DEHYDROGEN | 3e-07 | ||
| 1zem_A | 262 | Crystal Structure Of Nad+-Bound Xylitol Dehydrogena | 3e-07 | ||
| 1xg5_A | 279 | Structure Of Human Putative Dehydrogenase Mgc4172 I | 3e-07 | ||
| 3ai1_A | 263 | The Crystal Structure Of L-Sorbose Reductase From G | 4e-07 | ||
| 2rh4_A | 277 | Actinorhodin Ketoreductase, Actkr, With Nadph And I | 4e-07 | ||
| 1x7g_A | 261 | Actinorhodin Polyketide Ketoreductase, Act Kr, With | 4e-07 | ||
| 3sju_A | 279 | Hedamycin Polyketide Ketoreductase Bound To Nadph L | 4e-07 | ||
| 1w4z_A | 281 | Structure Of Actinorhodin Polyketide (Actiii) Reduc | 4e-07 | ||
| 3gvc_A | 277 | Crystal Structure Of Probable Short-Chain Dehydroge | 4e-07 | ||
| 3f9i_A | 249 | Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Prote | 5e-07 | ||
| 2cfc_A | 250 | Structural Basis For Stereo Selectivity In The (R)- | 5e-07 | ||
| 4dc1_A | 281 | Crystal Structure Of Y202f Actinorhodin Polyketide | 5e-07 | ||
| 1zbq_A | 327 | Crystal Structure Of Human 17-beta-hydroxysteroid D | 5e-07 | ||
| 4dc0_A | 281 | Crystal Structure Of F189w Actinorhodin Polyketide | 6e-07 | ||
| 4dbz_A | 281 | Crystal Structure Of V151l Actinorhodin Polyketide | 6e-07 | ||
| 2rhr_B | 277 | P94l Actinorhodin Ketordeuctase Mutant, With Nadph | 6e-07 | ||
| 1geg_A | 256 | Cryatal Structure Analysis Of Meso-2,3-Butanediol D | 7e-07 | ||
| 3ndr_A | 247 | Crystal Structure Of Tetrameric Pyridoxal 4-Dehydro | 7e-07 | ||
| 3csd_B | 281 | Actinorhodin Polyketide Ketoreductase Mutant P94l B | 7e-07 | ||
| 2c07_A | 285 | Oxoacyl-Acp Reductase Of Plasmodium Falciparum Leng | 8e-07 | ||
| 1spx_A | 278 | Crystal Structure Of Glucose Dehydrogenase Of Caeno | 8e-07 | ||
| 2gdz_A | 267 | Crystal Structure Of 15-Hydroxyprostaglandin Dehydr | 9e-07 | ||
| 3ai3_A | 263 | The Crystal Structure Of L-Sorbose Reductase From G | 1e-06 | ||
| 3o4r_A | 261 | Crystal Structure Of Human DehydrogenaseREDUCTASE ( | 1e-06 | ||
| 2ph3_A | 245 | Crystal Structure Of 3-oxoacyl-[acyl Carrier Protei | 1e-06 | ||
| 3gk3_A | 269 | Crystal Structure Of Acetoacetyl-Coa Reductase From | 2e-06 | ||
| 3cxr_A | 291 | Crystal Structure Of Gluconate 5-Dehydrogase From S | 2e-06 | ||
| 2nwq_A | 272 | Short Chain Dehydrogenase From Pseudomonas Aerugino | 2e-06 | ||
| 1doh_A | 283 | Structure Of Trihydroxynaphthalene Reductase In Com | 4e-06 | ||
| 1ybv_A | 283 | Structure Of Trihydroxynaphthalene Reductase In Com | 4e-06 | ||
| 1nff_A | 260 | Crystal Structure Of Rv2002 Gene Product From Mycob | 4e-06 | ||
| 3qlj_A | 322 | Crystal Structure Of A Short Chain Dehydrogenase Fr | 5e-06 | ||
| 3a28_C | 258 | Crystal Structure Of L-2,3-Butanediol Dehydrogenase | 6e-06 | ||
| 1yde_A | 270 | Crystal Structure Of Human Retinal Short-Chain Dehy | 6e-06 | ||
| 2ew8_A | 249 | Crystal Structure Of The (s)-specific 1-phenylethan | 7e-06 | ||
| 3ksu_A | 262 | Crystal Structure Of Short-Chain Dehydrogenase From | 9e-06 | ||
| 3ged_A | 247 | Fingerprint And Structural Analysis Of A Apo Scor E | 9e-06 | ||
| 3pgx_A | 280 | Crystal Structure Of A Putative Carveol Dehydrogena | 1e-05 | ||
| 3grp_A | 266 | 2.1 Angstrom Crystal Structure Of 3-Ketoacyl-(Acyl- | 1e-05 | ||
| 1gz6_A | 319 | (3r)-Hydroxyacyl-Coa Dehydrogenase Fragment Of Rat | 2e-05 | ||
| 3r3s_A | 294 | Structure Of The Ygha Oxidoreductase From Salmonell | 3e-05 | ||
| 3rih_A | 293 | Crystal Structure Of A Putative Short Chain Dehydro | 3e-05 | ||
| 1nfr_A | 260 | Rv2002 Gene Product From Mycobacterium Tuberculosis | 3e-05 | ||
| 3ezl_A | 256 | Crystal Structure Of Acetyacetyl-Coa Reductase From | 3e-05 | ||
| 4b79_A | 242 | The Aeropath Project And Pseudomonas Aeruginosa Hig | 4e-05 | ||
| 1zjy_A | 251 | Structure Of R-Specific Alcohol Dehydrogenase (Muta | 4e-05 | ||
| 4iin_A | 271 | Crystal Structure Of A Putative 3-Oxoacyl-[acyl-Car | 4e-05 | ||
| 4afn_A | 269 | Crystal Structure Of 3-ketoacyl-(acyl-carrier-prote | 6e-05 | ||
| 2jap_A | 247 | Clavulanic Acid Dehydrogenase: Structural And Bioch | 6e-05 | ||
| 3afm_A | 258 | Crystal Structure Of Aldose Reductase A1-R Responsi | 7e-05 | ||
| 1xkq_A | 280 | Crystal Structure Of Short-Chain DehydrogenaseREDUC | 7e-05 | ||
| 3ak4_A | 263 | Crystal Structure Of Nadh-Dependent Quinuclidinone | 7e-05 | ||
| 2et6_A | 604 | (3r)-Hydroxyacyl-Coa Dehydrogenase Domain Of Candid | 7e-05 | ||
| 1ja9_A | 274 | Crystal Structure Of 1,3,6,8-Tetrahydroxynaphthalen | 7e-05 | ||
| 1uls_A | 245 | Crystal Structure Of Tt0140 From Thermus Thermophil | 9e-05 | ||
| 4dqx_A | 277 | Crystal Structure Of A Short Chain Dehydrogenase Fr | 1e-04 | ||
| 4da9_A | 280 | Crystal Structure Of Putative Short-Chain Dehydroge | 1e-04 | ||
| 2zk7_A | 257 | Structure Of A C-Terminal Deletion Mutant Of Thermo | 1e-04 | ||
| 2dtd_A | 264 | Structure Of Thermoplasma Acidophilum Aldohexose De | 1e-04 | ||
| 1xhl_A | 297 | Crystal Structure Of Putative Tropinone Reductase-I | 1e-04 | ||
| 3l6e_A | 235 | Crystal Structure Of Putative Short Chain Dehydroge | 2e-04 | ||
| 3tzq_B | 271 | Crystal Structure Of A Short-Chain Type Dehydrogena | 2e-04 | ||
| 3v2g_A | 271 | Crystal Structure Of A DehydrogenaseREDUCTASE FROM | 2e-04 | ||
| 3gaf_A | 256 | 2.2a Crystal Structure Of 7-Alpha-Hydroxysteroid De | 2e-04 | ||
| 2b4q_A | 276 | Pseudomonas Aeruginosa RhlgNADP ACTIVE-Site Complex | 3e-04 | ||
| 2d1y_A | 256 | Crystal Structure Of Tt0321 From Thermus Thermophil | 3e-04 | ||
| 2fwm_X | 250 | Crystal Structure Of E. Coli Enta, A 2,3-Dihydrodih | 3e-04 | ||
| 1cyd_A | 244 | Carbonyl Reductase Complexed With Nadph And 2-Propa | 3e-04 | ||
| 3m1a_A | 281 | The Crystal Structure Of A Short-Chain Dehydrogenas | 5e-04 | ||
| 3oml_A | 613 | Structure Of Full-Length Peroxisomal Multifunctiona | 8e-04 |
| >pdb|4DYV|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE SDR FROM Xanthobacter Autotrophicus Py2 Length = 272 | Back alignment and structure |
|
| >pdb|2HQ1|A Chain A, Crystal Structure Of Orf 1438 A Putative GlucoseRIBITOL Dehydrogenase From Clostridium Thermocellum Length = 247 | Back alignment and structure |
|
| >pdb|4DRY|A Chain A, The Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein] Reductase From Rhizobium Meliloti Length = 281 | Back alignment and structure |
|
| >pdb|2NM0|A Chain A, Crystal Structure Of Sco1815: A Beta-Ketoacyl-Acyl Carrier Protein Reductase From Streptomyces Coelicolor A3(2) Length = 253 | Back alignment and structure |
|
| >pdb|2UVD|A Chain A, The Crystal Structure Of A 3-Oxoacyl-(Acyl Carrier Protein) Reductase From Bacillus Anthracis (Ba3989) Length = 246 | Back alignment and structure |
|
| >pdb|1VL8|A Chain A, Crystal Structure Of Gluconate 5-dehydrogenase (tm0441) From Thermotoga Maritima At 2.07 A Resolution Length = 267 | Back alignment and structure |
|
| >pdb|2BD0|A Chain A, Chlorobium Tepidum Sepiapterin Reductase Complexed With Nadp And Sepiapterin Length = 244 | Back alignment and structure |
|
| >pdb|4G81|D Chain D, Crystal Structure Of A Hexonate Dehydrogenase Ortholog (Target Efi- 506402 From Salmonella Enterica, Unliganded Structure Length = 255 | Back alignment and structure |
|
| >pdb|3TFO|A Chain A, Crystal Structure Of A Putative 3-Oxoacyl-(Acyl-Carrier-Protein) Reductase From Sinorhizobium Meliloti Length = 264 | Back alignment and structure |
|
| >pdb|1I01|A Chain A, Crystal Structure Of Beta-Ketoacyl [acyl Carrier Protein] Reductase From E. Coli. Length = 244 | Back alignment and structure |
|
| >pdb|3U5T|A Chain A, The Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein] Reductase From Sinorhizobium Meliloti Length = 267 | Back alignment and structure |
|
| >pdb|3RKU|A Chain A, Substrate Fingerprint And The Structure Of Nadp+ Dependent Serine Dehydrogenase From Saccharomyces Cerevisiae Complexed With Nadp+ Length = 287 | Back alignment and structure |
|
| >pdb|1K2W|A Chain A, Crystal Structure Of Sorbitol Dehydrogenase From R. Sphaeroides Length = 256 | Back alignment and structure |
|
| >pdb|3AY7|A Chain A, Crystal Structure Of Bacillus Megaterium Glucose Dehydrogenase 4 G259a Mutant Length = 269 | Back alignment and structure |
|
| >pdb|3AY6|A Chain A, Crystal Structure Of Bacillus Megaterium Glucose Dehydrogenase 4 A258f Mutant In Complex With Nadh And D-Glucose Length = 269 | Back alignment and structure |
|
| >pdb|1Q7C|A Chain A, The Structure Of Betaketoacyl-[acp] Reductase Y151f Mutant In Complex With Nadph Fragment Length = 244 | Back alignment and structure |
|
| >pdb|3AUS|A Chain A, Crystal Structure Of Bacillus Megaterium Glucose Dehydrogenase 4 In Ligand-Free Form Length = 269 | Back alignment and structure |
|
| >pdb|1EDO|A Chain A, The X-Ray Structure Of Beta-Keto Acyl Carrier Protein Reductase From Brassica Napus Complexed With Nadp+ Length = 244 | Back alignment and structure |
|
| >pdb|3SJ7|A Chain A, Structure Of Beta-Ketoacetyl-Coa Reductase (Fabg) From Staphylococcus Aureus Complex With Nadph Length = 252 | Back alignment and structure |
|
| >pdb|3V2H|A Chain A, The Crystal Structure Of D-Beta-Hydroxybutyrate Dehydrogenase From Sinorhizobium Meliloti Length = 281 | Back alignment and structure |
|
| >pdb|4IBO|A Chain A, Crystal Structure Of A Putative Gluconate Dehydrogenase From Agrobacterium Tumefaciens (Target Efi-506446) Length = 271 | Back alignment and structure |
|
| >pdb|3ASU|A Chain A, Crystal Structure Of Serine Dehydrogenase From Escherichia Coli Length = 248 | Back alignment and structure |
|
| >pdb|3R1I|A Chain A, Crystal Structure Of A Short-Chain Type DehydrogenaseREDUCTASE FROM Mycobacterium Marinum Length = 276 | Back alignment and structure |
|
| >pdb|4DML|A Chain A, 3-Oxoacyl-[acyl-Carrier-Protein] Reductase From Synechococcus Elongatus Pcc 7942 Length = 269 | Back alignment and structure |
|
| >pdb|1RWB|A Chain A, Cooperative Effect Of Two Surface Amino Acid Mutations (Q252l And E170k) Of Glucose Dehydrogenase From Bacillus Megaterium Iwg3 For The Stabilization Of Oligomeric State Length = 261 | Back alignment and structure |
|
| >pdb|1GEE|A Chain A, Crystal Structure Of Glucose Dehydrogenase Mutant Q252l Complexed With Nad+ Length = 261 | Back alignment and structure |
|
| >pdb|1GCO|A Chain A, Crystal Structure Of Glucose Dehydrogenase Complexed With Nad+ Length = 261 | Back alignment and structure |
|
| >pdb|3RSH|A Chain A, Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)reductase (Fabg) From Vibrio Cholerae O1 Complexed With Nadp+ (Space Group P62) Length = 251 | Back alignment and structure |
|
| >pdb|2CF2|E Chain E, Architecture Of Mammalian Fatty Acid Synthase Length = 226 | Back alignment and structure |
|
| >pdb|1G6K|A Chain A, Crystal Structure Of Glucose Dehydrogenase Mutant E96a Complexed With Nad+ Length = 261 | Back alignment and structure |
|
| >pdb|3TZH|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein) Reductase (Fabg)(F187a) From Vibrio Cholerae Length = 251 | Back alignment and structure |
|
| >pdb|3QIV|A Chain A, Crystal Structure Of A Putative Short-Chain Dehydrogenase Or 3- Oxoacyl-[acyl-Carrier-Protein] Reductase From Mycobacterium Paratuberculosis Atcc Baa-968 K-10 Length = 253 | Back alignment and structure |
|
| >pdb|3OEC|A Chain A, Crystal Structure Of Carveol Dehydrogenase From Mycobacterium Thermoresistibile Length = 317 | Back alignment and structure |
|
| >pdb|2HSD|A Chain A, The Refined Three-Dimensional Structure Of 3alpha,20beta- Hydroxysteroid Dehydrogenase And Possible Roles Of The Residues Conserved In Short-Chain Dehydrogenases Length = 253 | Back alignment and structure |
|
| >pdb|1HDC|A Chain A, Mechanism Of Inhibition Of 3alpha,20beta-Hydroxysteroid Dehydrogenase By A Licorice-Derived Steroidal Inhibitor Length = 254 | Back alignment and structure |
|
| >pdb|4FN4|A Chain A, Short-chain Nad(h)-dependent Dehydrogenase/reductase From Sulfolobus Acidocaldarius Length = 254 | Back alignment and structure |
|
| >pdb|2PNF|A Chain A, Structure Of Aquifex Aeolicus Fabg 3-oxoacyl-(acyl-carrier Protein) Reductase Length = 248 | Back alignment and structure |
|
| >pdb|3TZC|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein) Reductase (Fabg)(Y155f) From Vibrio Cholerae Length = 251 | Back alignment and structure |
|
| >pdb|1IY8|A Chain A, Crystal Structure Of Levodione Reductase Length = 267 | Back alignment and structure |
|
| >pdb|3TZK|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein) Reductase (Fabg)(G92a) From Vibrio Cholerae Length = 251 | Back alignment and structure |
|
| >pdb|3U09|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein) Reductase (Fabg)(G92d) From Vibrio Cholerae Length = 251 | Back alignment and structure |
|
| >pdb|1UZL|A Chain A, Maba From Mycobacterium Tuberculosis Length = 247 | Back alignment and structure |
|
| >pdb|3FTP|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein) Reductase From Burkholderia Pseudomallei At 2.05 A Resolution Length = 270 | Back alignment and structure |
|
| >pdb|3PK0|A Chain A, Crystal Structure Of Short-Chain DehydrogenaseREDUCTASE SDR FROM Mycobacterium Smegmatis Length = 262 | Back alignment and structure |
|
| >pdb|3RKR|A Chain A, Crystal Structure Of A Metagenomic Short-Chain Oxidoreductase (Sdr) In Complex With Nadp Length = 262 | Back alignment and structure |
|
| >pdb|1IPE|A Chain A, Tropinone Reductase-Ii Complexed With Nadph Length = 259 | Back alignment and structure |
|
| >pdb|2AE2|A Chain A, Tropinone Reductase-Ii Complexed With Nadp+ And Pseudotropine Length = 260 | Back alignment and structure |
|
| >pdb|2ZAT|A Chain A, Crystal Structure Of A Mammalian Reductase Length = 260 | Back alignment and structure |
|
| >pdb|1YXM|A Chain A, Crystal Structure Of Peroxisomal Trans 2-Enoyl Coa Reductase Length = 303 | Back alignment and structure |
|
| >pdb|4E3Z|A Chain A, Crystal Structure Of A Oxidoreductase From Rhizobium Etli Cfn 42 Length = 272 | Back alignment and structure |
|
| >pdb|3OSU|A Chain A, Crystal Structure Of The 3-Oxoacyl-Acyl Carrier Protein Reductase, Fabg, From Staphylococcus Aureus Length = 246 | Back alignment and structure |
|
| >pdb|3IS3|A Chain A, Crystal Structure Of 17beta-Hydroxysteroid Dehydrogenase (Apo Form) From Fungus Cochliobolus Lunatus Length = 270 | Back alignment and structure |
|
| >pdb|3I4F|A Chain A, Structure Of Putative 3-oxoacyl-reductase From Bacillus Thuringiensis Length = 264 | Back alignment and structure |
|
| >pdb|1XQ1|A Chain A, X-Ray Structure Of Putative Tropinone Reducatse From Arabidopsis Thaliana Gene At1g07440 Length = 266 | Back alignment and structure |
|
| >pdb|3TJR|A Chain A, Crystal Structure Of A Rv0851c Ortholog Short Chain Dehydrogenase From Mycobacterium Paratuberculosis Length = 301 | Back alignment and structure |
|
| >pdb|3UN1|A Chain A, Crystal Structure Of An Oxidoreductase From Sinorhizobium Meliloti 1021 Length = 260 | Back alignment and structure |
|
| >pdb|3ITD|A Chain A, Crystal Structure Of An Inactive 17beta-Hydroxysteroid Dehydrogenase (Y167f Mutated Form) From Fungus Cochliobolus Lunatus Length = 270 | Back alignment and structure |
|
| >pdb|3OIC|A Chain A, Crystal Structure Of Enoyl-Acp Reductases Iii (Fabl) From B. Subtilis (Apo Form) Length = 258 | Back alignment and structure |
|
| >pdb|4FGS|A Chain A, Crystal Structure Of A Probable Dehydrogenase Protein Length = 273 | Back alignment and structure |
|
| >pdb|3OP4|A Chain A, Crystal Structure Of Putative 3-Ketoacyl-(Acyl-Carrier-Protein) Reductase From Vibrio Cholerae O1 Biovar Eltor Str. N16961 In Complex With Nadp+ Length = 248 | Back alignment and structure |
|
| >pdb|3CTM|A Chain A, Crystal Structure Of A Carbonyl Reductase From Candida Parapsilosis With Anti-Prelog Stereo-Specificity Length = 279 | Back alignment and structure |
|
| >pdb|1UZM|A Chain A, Maba From Mycobacterium Tuberculosis Length = 247 | Back alignment and structure |
|
| >pdb|2NTN|A Chain A, Crystal Structure Of Maba-c60v/g139a/s144l Length = 267 | Back alignment and structure |
|
| >pdb|4E6P|A Chain A, Crystal Structure Of A Probable Sorbitol Dehydrogenase (Target Psi- 012078) From Sinorhizobium Meliloti 1021 Length = 259 | Back alignment and structure |
|
| >pdb|3IOY|A Chain A, Structure Of Putative Short-Chain Dehydrogenase (Saro_0793) From Novosphingobium Aromaticivorans Length = 319 | Back alignment and structure |
|
| >pdb|2Q2Q|A Chain A, Structure Of D-3-Hydroxybutyrate Dehydrogenase From Pseudomonas Putida Length = 255 | Back alignment and structure |
|
| >pdb|3NUG|A Chain A, Crystal Structure Of Wild Type Tetrameric Pyridoxal 4-Dehydrogenase From Mesorhizobium Loti Length = 247 | Back alignment and structure |
|
| >pdb|3O38|A Chain A, Crystal Structure Of A Short Chain Dehydrogenase From Mycobacterium Smegmatis Length = 266 | Back alignment and structure |
|
| >pdb|1AE1|A Chain A, Tropinone Reductase-I Complex With Nadp Length = 273 | Back alignment and structure |
|
| >pdb|2EHD|A Chain A, Crystal Structure Analysis Of Oxidoreductase Length = 234 | Back alignment and structure |
|
| >pdb|4IQG|C Chain C, Crystal Structure Of Bpro0239 Oxidoreductase From Polaromonas Sp. Js666 In Nadp Bound Form Length = 271 | Back alignment and structure |
|
| >pdb|3ENN|A Chain A, 2.1a Crystal Structure Of GlucoseRIBITOL DEHYDROGENASE FROM BRUCELLA Melitensis (P43212) Length = 249 | Back alignment and structure |
|
| >pdb|3EMK|A Chain A, 2.5a Crystal Structure Of GlucoseRIBITOL DEHYDROGENASE From Brucella Melitensis Length = 246 | Back alignment and structure |
|
| >pdb|1ZEM|A Chain A, Crystal Structure Of Nad+-Bound Xylitol Dehydrogenase Length = 262 | Back alignment and structure |
|
| >pdb|1XG5|A Chain A, Structure Of Human Putative Dehydrogenase Mgc4172 In Complex With Nadp Length = 279 | Back alignment and structure |
|
| >pdb|3AI1|A Chain A, The Crystal Structure Of L-Sorbose Reductase From Gluconobacter Frateurii Complexed With Nadph And L-Sorbose Reveals The Structure Bases Of Its Catalytic Mechanism And High Substrate Selectivity Length = 263 | Back alignment and structure |
|
| >pdb|2RH4|A Chain A, Actinorhodin Ketoreductase, Actkr, With Nadph And Inhibitor Emodin Length = 277 | Back alignment and structure |
|
| >pdb|1X7G|A Chain A, Actinorhodin Polyketide Ketoreductase, Act Kr, With Nadp Bound Length = 261 | Back alignment and structure |
|
| >pdb|3SJU|A Chain A, Hedamycin Polyketide Ketoreductase Bound To Nadph Length = 279 | Back alignment and structure |
|
| >pdb|1W4Z|A Chain A, Structure Of Actinorhodin Polyketide (Actiii) Reductase Length = 281 | Back alignment and structure |
|
| >pdb|3GVC|A Chain A, Crystal Structure Of Probable Short-Chain Dehydrogenase- Reductase From Mycobacterium Tuberculosis Length = 277 | Back alignment and structure |
|
| >pdb|3F9I|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein) Reductase Rickettsia Prowazekii Length = 249 | Back alignment and structure |
|
| >pdb|2CFC|A Chain A, Structural Basis For Stereo Selectivity In The (R)- And (S)- Hydroxypropylethane Thiosulfonate Dehydrogenases Length = 250 | Back alignment and structure |
|
| >pdb|4DC1|A Chain A, Crystal Structure Of Y202f Actinorhodin Polyketide Ketoreductase With Nadph Length = 281 | Back alignment and structure |
|
| >pdb|1ZBQ|A Chain A, Crystal Structure Of Human 17-beta-hydroxysteroid Dehydrogenase Type 4 In Complex With Nad Length = 327 | Back alignment and structure |
|
| >pdb|4DC0|A Chain A, Crystal Structure Of F189w Actinorhodin Polyketide Ketoreductase With Nadph Length = 281 | Back alignment and structure |
|
| >pdb|4DBZ|A Chain A, Crystal Structure Of V151l Actinorhodin Polyketide Ketoreductase With Nadph Length = 281 | Back alignment and structure |
|
| >pdb|2RHR|B Chain B, P94l Actinorhodin Ketordeuctase Mutant, With Nadph And Inhibitor Emodin Length = 277 | Back alignment and structure |
|
| >pdb|1GEG|A Chain A, Cryatal Structure Analysis Of Meso-2,3-Butanediol Dehydrogenase Length = 256 | Back alignment and structure |
|
| >pdb|3NDR|A Chain A, Crystal Structure Of Tetrameric Pyridoxal 4-Dehydrogenase From Mesorhizobium Loti Length = 247 | Back alignment and structure |
|
| >pdb|3CSD|B Chain B, Actinorhodin Polyketide Ketoreductase Mutant P94l Bound To Nadph And The Inhibitor Emodin Length = 281 | Back alignment and structure |
|
| >pdb|2C07|A Chain A, Oxoacyl-Acp Reductase Of Plasmodium Falciparum Length = 285 | Back alignment and structure |
|
| >pdb|1SPX|A Chain A, Crystal Structure Of Glucose Dehydrogenase Of Caenorhabditis Elegans In The Apo-Form Length = 278 | Back alignment and structure |
|
| >pdb|2GDZ|A Chain A, Crystal Structure Of 15-Hydroxyprostaglandin Dehydrogenase Type1, Complexed With Nad+ Length = 267 | Back alignment and structure |
|
| >pdb|3AI3|A Chain A, The Crystal Structure Of L-Sorbose Reductase From Gluconobacter Frateurii Complexed With Nadph And L-Sorbose Length = 263 | Back alignment and structure |
|
| >pdb|3O4R|A Chain A, Crystal Structure Of Human DehydrogenaseREDUCTASE (SDR FAMILY) MEMBER 4 (Dhrs4) Length = 261 | Back alignment and structure |
|
| >pdb|2PH3|A Chain A, Crystal Structure Of 3-oxoacyl-[acyl Carrier Protein] Reductase Ttha0415 From Thermus Thermophilus Length = 245 | Back alignment and structure |
|
| >pdb|3GK3|A Chain A, Crystal Structure Of Acetoacetyl-Coa Reductase From Burkholderia Pseudomallei 1710b Length = 269 | Back alignment and structure |
|
| >pdb|3CXR|A Chain A, Crystal Structure Of Gluconate 5-Dehydrogase From Streptococcus Suis Type 2 Length = 291 | Back alignment and structure |
|
| >pdb|2NWQ|A Chain A, Short Chain Dehydrogenase From Pseudomonas Aeruginosa Length = 272 | Back alignment and structure |
|
| >pdb|1DOH|A Chain A, Structure Of Trihydroxynaphthalene Reductase In Complex With Nadph And 4-nitro-inden-1-one Length = 283 | Back alignment and structure |
|
| >pdb|1YBV|A Chain A, Structure Of Trihydroxynaphthalene Reductase In Complex With Nadph And An Active Site Inhibitor Length = 283 | Back alignment and structure |
|
| >pdb|1NFF|A Chain A, Crystal Structure Of Rv2002 Gene Product From Mycobacterium Tuberculosis Length = 260 | Back alignment and structure |
|
| >pdb|3QLJ|A Chain A, Crystal Structure Of A Short Chain Dehydrogenase From Mycobacterium Avium Length = 322 | Back alignment and structure |
|
| >pdb|3A28|C Chain C, Crystal Structure Of L-2,3-Butanediol Dehydrogenase Length = 258 | Back alignment and structure |
|
| >pdb|1YDE|A Chain A, Crystal Structure Of Human Retinal Short-Chain DehydrogenaseREDUCTASE 3 Length = 270 | Back alignment and structure |
|
| >pdb|2EW8|A Chain A, Crystal Structure Of The (s)-specific 1-phenylethanol Dehydrogenase Of The Denitrifying Bacterium Strain Ebn1 Length = 249 | Back alignment and structure |
|
| >pdb|3KSU|A Chain A, Crystal Structure Of Short-Chain Dehydrogenase From Oenococcus Oeni Psu-1 Length = 262 | Back alignment and structure |
|
| >pdb|3GED|A Chain A, Fingerprint And Structural Analysis Of A Apo Scor Enzyme From Clostridium Thermocellum Length = 247 | Back alignment and structure |
|
| >pdb|3PGX|A Chain A, Crystal Structure Of A Putative Carveol Dehydrogenase From Mycobacterium Paratuberculosis Bound To Nicotinamide Adenine Dinucleotide Length = 280 | Back alignment and structure |
|
| >pdb|3GRP|A Chain A, 2.1 Angstrom Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein) Reductase From Bartonella Henselae Length = 266 | Back alignment and structure |
|
| >pdb|1GZ6|A Chain A, (3r)-Hydroxyacyl-Coa Dehydrogenase Fragment Of Rat Peroxisomal Multifunctional Enzyme Type 2 Length = 319 | Back alignment and structure |
|
| >pdb|3R3S|A Chain A, Structure Of The Ygha Oxidoreductase From Salmonella Enterica Length = 294 | Back alignment and structure |
|
| >pdb|3RIH|A Chain A, Crystal Structure Of A Putative Short Chain Dehydrogenase Or Reductase From Mycobacterium Abscessus Length = 293 | Back alignment and structure |
|
| >pdb|1NFR|A Chain A, Rv2002 Gene Product From Mycobacterium Tuberculosis Length = 260 | Back alignment and structure |
|
| >pdb|3EZL|A Chain A, Crystal Structure Of Acetyacetyl-Coa Reductase From Burkholderia Pseudomallei 1710b Length = 256 | Back alignment and structure |
|
| >pdb|4B79|A Chain A, The Aeropath Project And Pseudomonas Aeruginosa High-throughput Crystallographic Studies For Assessment Of Potential Targets In Early Stage Drug Discovery. Length = 242 | Back alignment and structure |
|
| >pdb|1ZJY|A Chain A, Structure Of R-Specific Alcohol Dehydrogenase (Mutant G37d) From Lactobacillus Brevis In Complex With Phenylethanol And Nadh Length = 251 | Back alignment and structure |
|
| >pdb|4IIN|A Chain A, Crystal Structure Of A Putative 3-Oxoacyl-[acyl-Carrier Protein]reductase From Helicobacter Pylori 26695 Complexed With Nad+ Length = 271 | Back alignment and structure |
|
| >pdb|4AFN|A Chain A, Crystal Structure Of 3-ketoacyl-(acyl-carrier-protein) Reductase (fabg) From Pseudomonas Aeruginosa At 2.3a Resolution Length = 269 | Back alignment and structure |
|
| >pdb|2JAP|A Chain A, Clavulanic Acid Dehydrogenase: Structural And Biochemical Analysis Of The Final Step In The Biosynthesis Of The Beta- Lactamase Inhibitor Clavulanic Acid Length = 247 | Back alignment and structure |
|
| >pdb|3AFM|A Chain A, Crystal Structure Of Aldose Reductase A1-R Responsible For Alginate Metabolism Length = 258 | Back alignment and structure |
|
| >pdb|1XKQ|A Chain A, Crystal Structure Of Short-Chain DehydrogenaseREDUCTASE OF Unknown Function From Caenorhabditis Elegans With Cofactor Length = 280 | Back alignment and structure |
|
| >pdb|3AK4|A Chain A, Crystal Structure Of Nadh-Dependent Quinuclidinone Reductase From Agrobacterium Tumefaciens Length = 263 | Back alignment and structure |
|
| >pdb|2ET6|A Chain A, (3r)-Hydroxyacyl-Coa Dehydrogenase Domain Of Candida Tropicalis Peroxisomal Multifunctional Enzyme Type 2 Length = 604 | Back alignment and structure |
|
| >pdb|1JA9|A Chain A, Crystal Structure Of 1,3,6,8-Tetrahydroxynaphthalene Reductase In Complex With Nadph And Pyroquilon Length = 274 | Back alignment and structure |
|
| >pdb|1ULS|A Chain A, Crystal Structure Of Tt0140 From Thermus Thermophilus Hb8 Length = 245 | Back alignment and structure |
|
| >pdb|4DQX|A Chain A, Crystal Structure Of A Short Chain Dehydrogenase From Rhizobium Etli Cfn 42 Length = 277 | Back alignment and structure |
|
| >pdb|4DA9|A Chain A, Crystal Structure Of Putative Short-Chain DehydrogenaseREDUCTASE FROM Sinorhizobium Meliloti 1021 Length = 280 | Back alignment and structure |
|
| >pdb|2ZK7|A Chain A, Structure Of A C-Terminal Deletion Mutant Of Thermoplasma Acidophilum Aldohexose Dehydrogenase (Aldt) Length = 257 | Back alignment and structure |
|
| >pdb|2DTD|A Chain A, Structure Of Thermoplasma Acidophilum Aldohexose Dehydrogenase (aldt) In Ligand-free Form Length = 264 | Back alignment and structure |
|
| >pdb|1XHL|A Chain A, Crystal Structure Of Putative Tropinone Reductase-Ii From Caenorhabditis Elegans With Cofactor And Substrate Length = 297 | Back alignment and structure |
|
| >pdb|3L6E|A Chain A, Crystal Structure Of Putative Short Chain DehydrogenaseREDUCTASE Family Oxidoreductase From Aeromonas Hydrophila Subsp. Hydrophila Atcc 7966 Length = 235 | Back alignment and structure |
|
| >pdb|3TZQ|B Chain B, Crystal Structure Of A Short-Chain Type DehydrogenaseREDUCTASE FROM Mycobacterium Marinum Length = 271 | Back alignment and structure |
|
| >pdb|3V2G|A Chain A, Crystal Structure Of A DehydrogenaseREDUCTASE FROM SINORHIZOBIUM Meliloti 1021 Length = 271 | Back alignment and structure |
|
| >pdb|3GAF|A Chain A, 2.2a Crystal Structure Of 7-Alpha-Hydroxysteroid Dehydrogenase From Brucella Melitensis Length = 256 | Back alignment and structure |
|
| >pdb|2B4Q|A Chain A, Pseudomonas Aeruginosa RhlgNADP ACTIVE-Site Complex Length = 276 | Back alignment and structure |
|
| >pdb|2D1Y|A Chain A, Crystal Structure Of Tt0321 From Thermus Thermophilus Hb8 Length = 256 | Back alignment and structure |
|
| >pdb|2FWM|X Chain X, Crystal Structure Of E. Coli Enta, A 2,3-Dihydrodihydroxy Benzoate Dehydrogenase Length = 250 | Back alignment and structure |
|
| >pdb|1CYD|A Chain A, Carbonyl Reductase Complexed With Nadph And 2-Propanol Length = 244 | Back alignment and structure |
|
| >pdb|3M1A|A Chain A, The Crystal Structure Of A Short-Chain Dehydrogenase From Streptomyces Avermitilis To 2a Length = 281 | Back alignment and structure |
|
| >pdb|3OML|A Chain A, Structure Of Full-Length Peroxisomal Multifunctional Enzyme Type 2 From Drosophila Melanogaster Length = 613 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 512 | |||
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 7e-46 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 4e-41 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 6e-41 | |
| 4dry_A | 281 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 1e-40 | |
| 4dyv_A | 272 | Short-chain dehydrogenase/reductase SDR; structura | 3e-40 | |
| 2zat_A | 260 | Dehydrogenase/reductase SDR family member 4; alpha | 7e-40 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 2e-39 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 3e-39 | |
| 1yxm_A | 303 | Pecra, peroxisomal trans 2-enoyl COA reductase; pe | 2e-38 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 6e-38 | |
| 2bd0_A | 244 | Sepiapterin reductase; oxidoreductase; HET: NAP BI | 6e-38 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 1e-37 | |
| 3kzv_A | 254 | Uncharacterized oxidoreductase YIR035C; cytoplasmi | 2e-37 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 3e-37 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 3e-37 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 3e-37 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 4e-37 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 4e-37 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 6e-37 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 7e-37 | |
| 1zem_A | 262 | Xylitol dehydrogenase; rossmann fold, dinucleotide | 9e-37 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 1e-36 | |
| 1xu9_A | 286 | Corticosteroid 11-beta-dehydrogenase, isozyme 1; h | 1e-36 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 1e-36 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 2e-36 | |
| 3oid_A | 258 | Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa | 6e-36 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 6e-36 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 6e-36 | |
| 1w6u_A | 302 | 2,4-dienoyl-COA reductase, mitochondrial precursor | 7e-36 | |
| 1gee_A | 261 | Glucose 1-dehydrogenase; short-chain dehydrogenase | 9e-36 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 2e-35 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 3e-35 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 3e-35 | |
| 1spx_A | 278 | Short-chain reductase family member (5L265); paral | 4e-35 | |
| 3a28_C | 258 | L-2.3-butanediol dehydrogenase; chiral substrate r | 5e-35 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 5e-35 | |
| 4fc7_A | 277 | Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman | 5e-35 | |
| 3ak4_A | 263 | NADH-dependent quinuclidinone reductase; SDR, (R)- | 8e-35 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 1e-34 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 1e-34 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 2e-34 | |
| 1xq1_A | 266 | Putative tropinone reducatse; structural genomics, | 2e-34 | |
| 1sby_A | 254 | Alcohol dehydrogenase; ternary complex, NAD, trifl | 2e-34 | |
| 1zk4_A | 251 | R-specific alcohol dehydrogenase; short chain redu | 2e-34 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 3e-34 | |
| 2ehd_A | 234 | Oxidoreductase, oxidoreductase, short-chain dehydr | 3e-34 | |
| 3tox_A | 280 | Short chain dehydrogenase; structural genomics, PS | 4e-34 | |
| 2nwq_A | 272 | Probable short-chain dehydrogenase; oxidoreductase | 5e-34 | |
| 1cyd_A | 244 | Carbonyl reductase; short-chain dehydrogenase, oxi | 5e-34 | |
| 1xhl_A | 297 | Short-chain dehydrogenase/reductase family member | 6e-34 | |
| 3d3w_A | 244 | L-xylulose reductase; uronate cycle, short-chain d | 8e-34 | |
| 1iy8_A | 267 | Levodione reductase; oxidoreductase; HET: NAD; 1.6 | 1e-33 | |
| 3v2h_A | 281 | D-beta-hydroxybutyrate dehydrogenase; structural g | 1e-33 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 2e-33 | |
| 4e3z_A | 272 | Putative oxidoreductase protein; PSI-biology, stru | 2e-33 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 3e-33 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 4e-33 | |
| 1x1t_A | 260 | D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S | 4e-33 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 5e-33 | |
| 3n74_A | 261 | 3-ketoacyl-(acyl-carrier-protein) reductase; seatt | 5e-33 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 5e-33 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 6e-33 | |
| 3rku_A | 287 | Oxidoreductase YMR226C; substrate fingerprint, sho | 8e-33 | |
| 2yut_A | 207 | Putative short-chain oxidoreductase; alpha and bet | 8e-33 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 9e-33 | |
| 3orf_A | 251 | Dihydropteridine reductase; alpha-beta-alpha sandw | 9e-33 | |
| 3kvo_A | 346 | Hydroxysteroid dehydrogenase-like protein 2; HSDL2 | 1e-32 | |
| 3e9n_A | 245 | Putative short-chain dehydrogenase/reductase; stru | 1e-32 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 1e-32 | |
| 1h5q_A | 265 | NADP-dependent mannitol dehydrogenase; oxidoreduct | 1e-32 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 1e-32 | |
| 2qq5_A | 260 | DHRS1, dehydrogenase/reductase SDR family member 1 | 2e-32 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 2e-32 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 2e-32 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 2e-32 | |
| 2cfc_A | 250 | 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor | 3e-32 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 3e-32 | |
| 3un1_A | 260 | Probable oxidoreductase; structural genomics, PSI- | 4e-32 | |
| 1xkq_A | 280 | Short-chain reductase family member (5D234); parra | 6e-32 | |
| 3ctm_A | 279 | Carbonyl reductase; alcohol dehydrogenase, short-c | 6e-32 | |
| 3sc4_A | 285 | Short chain dehydrogenase (A0QTM2 homolog); ssgcid | 8e-32 | |
| 3asu_A | 248 | Short-chain dehydrogenase/reductase SDR; SDR famil | 1e-31 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 1e-31 | |
| 3e03_A | 274 | Short chain dehydrogenase; structural genomics, PS | 1e-31 | |
| 1nff_A | 260 | Putative oxidoreductase RV2002; directed evolution | 1e-31 | |
| 1yde_A | 270 | Retinal dehydrogenase/reductase 3; oxidoreductase, | 2e-31 | |
| 1oaa_A | 259 | Sepiapterin reductase; tetrahydrobiopterin, oxidor | 2e-31 | |
| 1vl8_A | 267 | Gluconate 5-dehydrogenase; TM0441, structural geno | 2e-31 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 2e-31 | |
| 3afn_B | 258 | Carbonyl reductase; alpha/beta/alpha, rossmann-fol | 2e-31 | |
| 1hdc_A | 254 | 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi | 2e-31 | |
| 2z1n_A | 260 | Dehydrogenase; reductase, SDR, oxidoreductase; 1.8 | 3e-31 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 3e-31 | |
| 3u9l_A | 324 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 4e-31 | |
| 3m1a_A | 281 | Putative dehydrogenase; short, PSI, MCSG, structur | 4e-31 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 4e-31 | |
| 1zmo_A | 244 | Halohydrin dehalogenase; haloalcohol dehalogenase, | 4e-31 | |
| 2wsb_A | 254 | Galactitol dehydrogenase; oxidoreductase, SDR, ros | 5e-31 | |
| 3zv4_A | 281 | CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox | 6e-31 | |
| 2q2v_A | 255 | Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore | 7e-31 | |
| 3tzq_B | 271 | Short-chain type dehydrogenase/reductase; ssgcid, | 9e-31 | |
| 3gdg_A | 267 | Probable NADP-dependent mannitol dehydrogenase; ro | 1e-30 | |
| 2bgk_A | 278 | Rhizome secoisolariciresinol dehydrogenase; oxidor | 1e-30 | |
| 2ew8_A | 249 | (S)-1-phenylethanol dehydrogenase; transferase; 2. | 1e-30 | |
| 3p19_A | 266 | BFPVVD8, putative blue fluorescent protein; rossma | 2e-30 | |
| 3gem_A | 260 | Short chain dehydrogenase; structural genomics, AP | 2e-30 | |
| 4e4y_A | 244 | Short chain dehydrogenase family protein; structur | 3e-30 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 5e-30 | |
| 3uxy_A | 266 | Short-chain dehydrogenase/reductase SDR; structura | 7e-30 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 8e-30 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 9e-30 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 1e-29 | |
| 2dtx_A | 264 | Glucose 1-dehydrogenase related protein; rossmann | 1e-29 | |
| 2d1y_A | 256 | Hypothetical protein TT0321; strucrtural genomics, | 1e-29 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 3e-29 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 6e-29 | |
| 3uf0_A | 273 | Short-chain dehydrogenase/reductase SDR; gluconate | 6e-29 | |
| 1hxh_A | 253 | 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b | 7e-29 | |
| 3cxt_A | 291 | Dehydrogenase with different specificities; rossma | 1e-28 | |
| 3vtz_A | 269 | Glucose 1-dehydrogenase; rossmann fold, oxidoreduc | 1e-28 | |
| 1zmt_A | 254 | Haloalcohol dehalogenase HHEC; halohydrin dehaloge | 2e-28 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 2e-28 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 6e-28 | |
| 2b4q_A | 276 | Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier | 1e-27 | |
| 3icc_A | 255 | Putative 3-oxoacyl-(acyl carrier protein) reducta; | 1e-27 | |
| 2rhc_B | 277 | Actinorhodin polyketide ketoreductase; oxidoreduct | 2e-27 | |
| 3rih_A | 293 | Short chain dehydrogenase or reductase; structural | 4e-27 | |
| 2ekp_A | 239 | 2-deoxy-D-gluconate 3-dehydrogenase; structural ge | 5e-27 | |
| 2fwm_X | 250 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e | 9e-27 | |
| 1mxh_A | 276 | Pteridine reductase 2; SDR topology, protein-subst | 1e-26 | |
| 3tsc_A | 277 | Putative oxidoreductase; structural genomics, seat | 7e-26 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 8e-26 | |
| 3i4f_A | 264 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 1e-25 | |
| 2ag5_A | 246 | DHRS6, dehydrogenase/reductase (SDR family) member | 1e-25 | |
| 1uls_A | 245 | Putative 3-oxoacyl-acyl carrier protein reductase; | 2e-25 | |
| 3uve_A | 286 | Carveol dehydrogenase ((+)-trans-carveol dehydrog; | 3e-25 | |
| 1dhr_A | 241 | Dihydropteridine reductase; oxidoreductase(acting | 6e-25 | |
| 2pd6_A | 264 | Estradiol 17-beta-dehydrogenase 8; short-chain deh | 6e-25 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 7e-25 | |
| 2c07_A | 285 | 3-oxoacyl-(acyl-carrier protein) reductase; oxidor | 1e-24 | |
| 2x9g_A | 288 | PTR1, pteridine reductase; short chain dehydrogena | 2e-24 | |
| 3d7l_A | 202 | LIN1944 protein; APC89317, structural genomics, PS | 2e-24 | |
| 1ooe_A | 236 | Dihydropteridine reductase; structural genomics, P | 2e-24 | |
| 1yo6_A | 250 | Putative carbonyl reductase sniffer; tyrosine-depe | 6e-24 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 7e-24 | |
| 2hq1_A | 247 | Glucose/ribitol dehydrogenase; CTH-1438, structura | 7e-24 | |
| 1edo_A | 244 | Beta-keto acyl carrier protein reductase; nucleoti | 8e-24 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 8e-24 | |
| 4dmm_A | 269 | 3-oxoacyl-[acyl-carrier-protein] reductase; rossma | 9e-24 | |
| 2pnf_A | 248 | 3-oxoacyl-[acyl-carrier-protein] reductase; short | 1e-23 | |
| 1sny_A | 267 | Sniffer CG10964-PA; alpha and beta protein, rossma | 3e-23 | |
| 2uvd_A | 246 | 3-oxoacyl-(acyl-carrier-protein) reductase; beta-k | 3e-23 | |
| 1e7w_A | 291 | Pteridine reductase; dihydrofolate reductase, shor | 4e-23 | |
| 3ezl_A | 256 | Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA | 4e-23 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 4e-23 | |
| 3osu_A | 246 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 5e-23 | |
| 2ph3_A | 245 | 3-oxoacyl-[acyl carrier protein] reductase; TTHA04 | 7e-23 | |
| 2qhx_A | 328 | Pteridine reductase 1; oxidoreductase, short-chain | 8e-23 | |
| 1o5i_A | 249 | 3-oxoacyl-(acyl carrier protein) reductase; TM1169 | 1e-22 | |
| 3gk3_A | 269 | Acetoacetyl-COA reductase; acetoacetyl-CO reductas | 1e-22 | |
| 3op4_A | 248 | 3-oxoacyl-[acyl-carrier protein] reductase; 3-keto | 2e-22 | |
| 1uzm_A | 247 | 3-oxoacyl-[acyl-carrier protein] reductase; beta-k | 2e-22 | |
| 2nm0_A | 253 | Probable 3-oxacyl-(acyl-carrier-protein) reductas; | 2e-22 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 3e-22 | |
| 1jtv_A | 327 | 17 beta-hydroxysteroid dehydrogenase type 1; stero | 4e-22 | |
| 2o23_A | 265 | HADH2 protein; HSD17B10, schad, ERAB, type II HADH | 8e-22 | |
| 3grp_A | 266 | 3-oxoacyl-(acyl carrierprotein) reductase; structu | 1e-21 | |
| 3ppi_A | 281 | 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de | 2e-21 | |
| 3oec_A | 317 | Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; | 2e-21 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 4e-21 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 1e-18 | |
| 1gz6_A | 319 | Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF | 5e-21 | |
| 3qlj_A | 322 | Short chain dehydrogenase; structural genomics, se | 7e-21 | |
| 3tpc_A | 257 | Short chain alcohol dehydrogenase-related dehydro; | 8e-21 | |
| 3oml_A | 613 | GH14720P, peroxisomal multifunctional enzyme type | 1e-20 | |
| 2dkn_A | 255 | 3-alpha-hydroxysteroid dehydrogenase; oxidoreducta | 2e-20 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 2e-20 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 3e-20 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 4e-20 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 9e-20 | |
| 3s55_A | 281 | Putative short-chain dehydrogenase/reductase; stru | 3e-19 | |
| 1uay_A | 242 | Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid | 5e-17 | |
| 3tl3_A | 257 | Short-chain type dehydrogenase/reductase; ssgcid, | 5e-17 | |
| 3u0b_A | 454 | Oxidoreductase, short chain dehydrogenase/reducta | 9e-17 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 3e-15 | |
| 1fjh_A | 257 | 3alpha-hydroxysteroid dehydrogenase/carbonyl reduc | 2e-14 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-11 | |
| 3rd5_A | 291 | Mypaa.01249.C; ssgcid, structural genomics, seattl | 1e-10 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 2e-06 | |
| 3slk_A | 795 | Polyketide synthase extender module 2; rossmann fo | 3e-05 |
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} Length = 235 | Back alignment and structure |
|---|
Score = 159 bits (404), Expect = 7e-46
Identities = 51/234 (21%), Positives = 102/234 (43%), Gaps = 29/234 (12%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
++++TG+ GLG+AL + G +V + R + ++ L G
Sbjct: 4 GHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLL-----------GN--- 49
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
V GI D+ DV AV G ++ ++ AGT + F P+ +T E+I
Sbjct: 50 ------AVIGIVADLAHHEDVDVAFAAAVEWGGLPELVLHCAGTGE-FGPVGVYTAEQIR 102
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQ 357
+++ +NLV +IL ++ +R++ ++ GG + N+ + + ++Y ++K G+R
Sbjct: 103 RVMESNLVSTILVAQQTVRLIGER--GGVLANV-LSSAAQVGKANESLYCASKWGMRGFL 159
Query: 358 ASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLV 411
SL E K S + + P + ++ + + PE A ++
Sbjct: 160 ESLRAELKDSPLRLVNLYPSGIRSEFWDNTDHVDPSGFMT-----PEDAAAYML 208
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} Length = 250 | Back alignment and structure |
|---|
Score = 146 bits (372), Expect = 4e-41
Identities = 52/235 (22%), Positives = 98/235 (41%), Gaps = 28/235 (11%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
+ITG+++G+G +A G RVV+ +RS +++ E+ + K
Sbjct: 10 AIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHV----------- 58
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQI 299
+ + D+ + ++G++DI +N A L + +I
Sbjct: 59 ---QEPIVLPLDITDCTKADTEIKDIHQKYGAVDILVNAAAM--FMDGSLSEPVDNFRKI 113
Query: 300 VSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGS--GGSSTPLTAVYGSTKCGLRQLQ 357
+ N++ + +M+ Q K G+IFN+ S +YGSTK L L
Sbjct: 114 MEINVIAQYGILKTVTEIMKVQ-KNGYIFNV---ASRAAKYGFADGGIYGSTKFALLGLA 169
Query: 358 ASLFKESKRSKVGVHTASPGMVLTDLL-LSGSTIQNKQMFNIICELPETVARTLV 411
SL++E + V T PG V TD+ +G+ ++++M P+ + T+
Sbjct: 170 ESLYRELAPLGIRVTTLCPGWVNTDMAKKAGTPFKDEEMIQ-----PDDLLNTIR 219
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} Length = 252 | Back alignment and structure |
|---|
Score = 146 bits (371), Expect = 6e-41
Identities = 51/234 (21%), Positives = 85/234 (36%), Gaps = 25/234 (10%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
V + G+ +G +A++F G V R+ E + V E+E AAGG
Sbjct: 10 VAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIE--------AAGG----- 56
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQI 299
++ + D +V N A + +++ I N G N P+L+ T+ ++
Sbjct: 57 ----RIVARSLDARNEDEVTAFLN-AADAHAPLEVTIFNVGANV-NFPILETTDRVFRKV 110
Query: 300 VSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQAS 359
+ RE+ R+M G IF GA + A + S K GLR + S
Sbjct: 111 WEMACWAGFVSGRESARLMLAH-GQGKIFFT-GATASLRGGSGFAAFASAKFGLRAVAQS 168
Query: 360 LFKESKRSKVGV-HTASPGMVLTDLLLSGSTIQNKQMFNIICE---LPETVART 409
+ +E + V H V T + + + P VA
Sbjct: 169 MARELMPKNIHVAHLIIDSGVDTAWVRERREQMFGKDALANPDLLMPPAAVAGA 222
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} Length = 281 | Back alignment and structure |
|---|
Score = 146 bits (372), Expect = 1e-40
Identities = 60/208 (28%), Positives = 93/208 (44%), Gaps = 18/208 (8%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
R ++TG G+G+ +A+ G VV+ R + + E+ G
Sbjct: 34 RIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIG--------GRTG--- 82
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
V + CDV +P V L EF +D+ +NNAG+N PL + T E+
Sbjct: 83 -----NIVRAVVCDVGDPDQVAALFAAVRAEFARLDLLVNNAGSNVPPVPLEEVTFEQWN 137
Query: 298 QIVSTNLVGSILCTREAMRVMRDQ-PKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQL 356
IV+ NL G+ LCT+ A R+M+ Q P+GG I N G+ S + P +A Y +TK + L
Sbjct: 138 GIVAANLTGAFLCTQHAFRMMKAQTPRGGRIINN-GSISAQTPRPNSAPYTATKHAITGL 196
Query: 357 QASLFKESKRSKVGVHTASPGMVLTDLL 384
S + + + G TD+
Sbjct: 197 TKSTALDGRMHDIACGQIDIGNAATDMT 224
|
| >4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} Length = 272 | Back alignment and structure |
|---|
Score = 145 bits (368), Expect = 3e-40
Identities = 61/208 (29%), Positives = 96/208 (46%), Gaps = 22/208 (10%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ ++TG+ G+G+A+A +G V +A R ++++ T E+ G
Sbjct: 29 KIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEI-----------GD--- 74
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
+ DV +P V+ L V +FG +D+ NNAGT P+ T + +
Sbjct: 75 ------DALCVPTDVTDPDSVRALFTATVEKFGRVDVLFNNAGTGAPAIPMEDLTFAQWK 128
Query: 298 QIVSTNLVGSILCTREAMRVMRDQ-PKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQL 356
Q+V TNL G LCT+EA RVM+ Q P+GG I N G+ S S P +A Y +TK + L
Sbjct: 129 QVVDTNLTGPFLCTQEAFRVMKAQEPRGGRIINN-GSISATSPRPYSAPYTATKHAITGL 187
Query: 357 QASLFKESKRSKVGVHTASPGMVLTDLL 384
S + + + G T +
Sbjct: 188 TKSTSLDGRVHDIACGQIDIGNADTPMA 215
|
| >2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* Length = 260 | Back alignment and structure |
|---|
Score = 144 bits (365), Expect = 7e-40
Identities = 56/207 (27%), Positives = 91/207 (43%), Gaps = 21/207 (10%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ ++T ST G+G A+AR G VVV+SR E+V TV L+ G
Sbjct: 15 KVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQ--------GEGL--- 63
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
V G C V + D ++L AVN G +DI ++NA N F ++ T E +
Sbjct: 64 ------SVTGTVCHVGKAEDRERLVAMAVNLHGGVDILVSNAAVNPFFGNIIDATEEVWD 117
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD-GAGSGGSSTPLTAVYGSTKCGLRQL 356
+I+ N+ ++L T+ + M + GG + + P Y +K L L
Sbjct: 118 KILHVNVKATVLMTKAVVPEMEKR-GGGSVLIVSSVGAYHPF--PNLGPYNVSKTALLGL 174
Query: 357 QASLFKESKRSKVGVHTASPGMVLTDL 383
+L E + V+ +PG++ T+
Sbjct: 175 TKNLAVELAPRNIRVNCLAPGLIKTNF 201
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} Length = 262 | Back alignment and structure |
|---|
Score = 143 bits (362), Expect = 2e-39
Identities = 59/207 (28%), Positives = 90/207 (43%), Gaps = 21/207 (10%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ V+TG++RG+G A+AR+ G RVV+ +R E +R E+ AAGG
Sbjct: 30 QVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIV--------AAGG--- 78
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
+ ACD+ + + + G D+ +NNAG PL E +
Sbjct: 79 ------EAESHACDLSHSDAIAAFATGVLAAHGRCDVLVNNAGVGWFGGPLHTMKPAEWD 132
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG-AGSGGSSTPLTAVYGSTKCGLRQL 356
+++ NL L R M K GHI N+ AG A Y ++K GL L
Sbjct: 133 ALIAVNLKAPYLLLRAFAPAMIAA-KRGHIINISSLAGKNPV--ADGAAYTASKWGLNGL 189
Query: 357 QASLFKESKRSKVGVHTASPGMVLTDL 383
S +E ++ +V V +PG V T+
Sbjct: 190 MTSAAEELRQHQVRVSLVAPGSVRTEF 216
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} Length = 281 | Back alignment and structure |
|---|
Score = 143 bits (362), Expect = 3e-39
Identities = 44/207 (21%), Positives = 83/207 (40%), Gaps = 16/207 (7%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
R ++TG G+GK +A + +G V++ R+ + + V ELE G
Sbjct: 12 RTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANG--------- 62
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
+ D+ + + + G + ++ AG ++ P+ Q +E
Sbjct: 63 -----GAIRYEPTDITNEDETARAVDAVTAWHGRLHGVVHCAGGSENIGPITQVDSEAWR 117
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQ 357
+ V N+ G++ + A R M GG + + + ++ YG TK + L
Sbjct: 118 RTVDLNVNGTMYVLKHAAREMVRG-GGGSFVGI-SSIAASNTHRWFGAYGVTKSAVDHLM 175
Query: 358 ASLFKESKRSKVGVHTASPGMVLTDLL 384
E S V V++ PG++ TDL+
Sbjct: 176 QLAADELGASWVRVNSIRPGLIRTDLV 202
|
| >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 Length = 303 | Back alignment and structure |
|---|
Score = 141 bits (357), Expect = 2e-38
Identities = 51/205 (24%), Positives = 88/205 (42%), Gaps = 16/205 (7%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ ++TG G+GKA+ +E L G VV+ASR E ++ EL+ NL
Sbjct: 19 QVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPP---TKQA--- 72
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
+V I C++ +V L ++ FG I+ +NN G P +++
Sbjct: 73 ------RVIPIQCNIRNEEEVNNLVKSTLDTFGKINFLVNNGGGQFL-SPAEHISSKGWH 125
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQ 357
++ TNL G+ + + GG I N+ G PL G+ + G+ L
Sbjct: 126 AVLETNLTGTFYMCKAVYSSWMKE-HGGSIVNIIVPTKAGF--PLAVHSGAARAGVYNLT 182
Query: 358 ASLFKESKRSKVGVHTASPGMVLTD 382
SL E S + ++ +PG++ +
Sbjct: 183 KSLALEWACSGIRINCVAPGVIYSQ 207
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} Length = 264 | Back alignment and structure |
|---|
Score = 139 bits (352), Expect = 6e-38
Identities = 42/205 (20%), Positives = 75/205 (36%), Gaps = 20/205 (9%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
VVI+G LG LAR G +V+A+R+ E + ++ G
Sbjct: 14 VVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVT--------DTGR----- 60
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQI 299
+ + D+ + A V L + + +G +D+ INNA KP T E +
Sbjct: 61 ----RALSVGTDITDDAQVAHLVDETMKAYGRVDVVINNAFRVPSMKPFANTTFEHMRDA 116
Query: 300 VSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQAS 359
+ + G++ + + G + N+ + S Y K L + +
Sbjct: 117 IELTVFGALRLIQGFTPALE--ESKGAVVNV-NSMVVRHSQAKYGAYKMAKSALLAMSQT 173
Query: 360 LFKESKRSKVGVHTASPGMVLTDLL 384
L E + V++ PG + L
Sbjct: 174 LATELGEKGIRVNSVLPGYIWGGTL 198
|
| >2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2 Length = 244 | Back alignment and structure |
|---|
Score = 138 bits (350), Expect = 6e-38
Identities = 59/240 (24%), Positives = 108/240 (45%), Gaps = 34/240 (14%)
Query: 180 VVITGSTRGLGKALAREF-------LLSGDRVVVASRSSESVRMTVTELEENLKEGMMAA 232
++ITG+ +G+G+A+A EF +V++SR++ + E A
Sbjct: 5 LLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECR--------AE 56
Query: 233 GGSSKKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFT 292
G I D+ + ADV++L+ V +G ID +NNAG + F L T
Sbjct: 57 GA---------LTDTITADISDMADVRRLTTHIVERYGHIDCLVNNAGVGR-FGALSDLT 106
Query: 293 NEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD-GAGSGGSSTPLTAVYGSTKC 351
E+ + ++TNL G+ T+ +M Q GHIF + A + +++Y +K
Sbjct: 107 EEDFDYTMNTNLKGTFFLTQALFALMERQ-HSGHIFFITSVAATKAF--RHSSIYCMSKF 163
Query: 352 GLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLV 411
G R L ++ +++ V + PG V T + + ++ ++ +PE +A +V
Sbjct: 164 GQRGLVETMRLYARKCNVRITDVQPGAVYTPMW---GKVDDEMQALMM--MPEDIAAPVV 218
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A Length = 259 | Back alignment and structure |
|---|
Score = 138 bits (349), Expect = 1e-37
Identities = 52/206 (25%), Positives = 89/206 (43%), Gaps = 22/206 (10%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
++ +ITGS RG+G+A A ++ G V +A E R E+ G
Sbjct: 9 KSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEI-----------GP--- 54
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
+ DV + V G +DI +NNA P+++ T E E
Sbjct: 55 ------AAYAVQMDVTRQDSIDAAIAATVEHAGGLDILVNNAALFD-LAPIVEITRESYE 107
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQ 357
++ + N+ G++ + A R M Q +GG I NM + +G L A+Y +TK + L
Sbjct: 108 KLFAINVAGTLFTLQAAARQMIAQGRGGKIINM-ASQAGRRGEALVAIYCATKAAVISLT 166
Query: 358 ASLFKESKRSKVGVHTASPGMVLTDL 383
S + + ++ V+ +PG+V +
Sbjct: 167 QSAGLDLIKHRINVNAIAPGVVDGEH 192
|
| >3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae} Length = 254 | Back alignment and structure |
|---|
Score = 137 bits (347), Expect = 2e-37
Identities = 40/204 (19%), Positives = 80/204 (39%), Gaps = 23/204 (11%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
+++TG +RG+GK++ VV + E LK+ G
Sbjct: 5 ILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARS---------EAPLKKLKEKYGD----- 50
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQI 299
+ + D+ E + +++L N AV G ID + NAG + + + + +++
Sbjct: 51 ----RFFYVVGDITEDSVLKQLVNAAVKGHGKIDSLVANAGVLEPVQNVNEIDVNAWKKL 106
Query: 300 VSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQAS 359
N + A+ ++ G++ + + + YGS+K L +
Sbjct: 107 YDINFFSIVSLVGIALPELKKT--NGNVVFV-SSDACNMYFSSWGAYGSSKAALNHFAMT 163
Query: 360 LFKESKRSKVGVHTASPGMVLTDL 383
L E + +V +PG+V TD+
Sbjct: 164 LANEER--QVKAIAVAPGIVDTDM 185
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* Length = 263 | Back alignment and structure |
|---|
Score = 137 bits (347), Expect = 3e-37
Identities = 53/235 (22%), Positives = 95/235 (40%), Gaps = 19/235 (8%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ VITGS+ G+G A+A F G +V+ +R + + L+E G
Sbjct: 8 KVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKE--------KFG--- 56
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
+V +A DV P V + + FG DI +NNAGT + +++ +E+ +
Sbjct: 57 -----VRVLEVAVDVATPEGVDAVVESVRSSFGGADILVNNAGTGSN-ETIMEAADEKWQ 110
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQ 357
++ ++ R + MR + GG I + + +Y TK L
Sbjct: 111 FYWELLVMAAVRLARGLVPGMRAR-GGGAIIHN-ASICAVQPLWYEPIYNVTKAALMMFS 168
Query: 358 ASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVP 412
+L E + + V+ +PG++LT + + K ++VA P
Sbjct: 169 KTLATEVIKDNIRVNCINPGLILTPDWIKTAKELTKDNGGDWKGYLQSVADEHAP 223
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 Length = 256 | Back alignment and structure |
|---|
Score = 136 bits (346), Expect = 3e-37
Identities = 49/206 (23%), Positives = 89/206 (43%), Gaps = 19/206 (9%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ ++TG+ +G+GKA+A + G V +A + + + +E+ AGG
Sbjct: 3 KVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEIN--------QAGG--- 51
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
+ DV + V A G D+ +NNAG P+ T E ++
Sbjct: 52 ------HAVAVKVDVSDRDQVFAAVEQARKTLGGFDVIVNNAGVAP-STPIESITPEIVD 104
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQ 357
++ + N+ G I + A+ + + GG I N + +G P AVY S+K +R L
Sbjct: 105 KVYNINVKGVIWGIQAAVEAFKKEGHGGKIINA-CSQAGHVGNPELAVYSSSKFAVRGLT 163
Query: 358 ASLFKESKRSKVGVHTASPGMVLTDL 383
+ ++ + V+ PG+V T +
Sbjct: 164 QTAARDLAPLGITVNGYCPGIVKTPM 189
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} Length = 266 | Back alignment and structure |
|---|
Score = 136 bits (346), Expect = 3e-37
Identities = 49/206 (23%), Positives = 90/206 (43%), Gaps = 18/206 (8%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ +ITG+T+G+G +AR F +G R+V++ R + L E G
Sbjct: 21 KRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGE-------QFGT--- 70
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
V +A D+ EP +L+ A FG +D+ +NNAG + +P++ + +
Sbjct: 71 ------DVHTVAIDLAEPDAPAELARRAAEAFGGLDVLVNNAGISH-PQPVVDTDPQLFD 123
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQ 357
++ NL L + M +GG I + + + + P Y ++K GL
Sbjct: 124 ATIAVNLRAPALLASAVGKAMVAAGEGGAIITV-ASAAALAPLPDHYAYCTSKAGLVMAT 182
Query: 358 ASLFKESKRSKVGVHTASPGMVLTDL 383
L +E + ++ P +VLT++
Sbjct: 183 KVLARELGPHGIRANSVCPTVVLTEM 208
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} Length = 257 | Back alignment and structure |
|---|
Score = 136 bits (345), Expect = 4e-37
Identities = 47/186 (25%), Positives = 78/186 (41%), Gaps = 19/186 (10%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ V+ITG + G+GK +A F G RVV+ R+ E + E+E G
Sbjct: 7 KVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIE--------QFPG--- 55
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
++ + DV D+QK+ +FG IDI INNA N P +
Sbjct: 56 ------QILTVQMDVRNTDDIQKMIEQIDEKFGRIDILINNAAGNF-ICPAEDLSVNGWN 108
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQ 357
+++ L G+ C++ + ++ G+I NM A + P + K G+ +
Sbjct: 109 SVINIVLNGTFYCSQAIGKYWIEKGIKGNIINM-VATYAWDAGPGVIHSAAAKAGVLAMT 167
Query: 358 ASLFKE 363
+L E
Sbjct: 168 KTLAVE 173
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} Length = 260 | Back alignment and structure |
|---|
Score = 136 bits (345), Expect = 4e-37
Identities = 48/221 (21%), Positives = 81/221 (36%), Gaps = 20/221 (9%)
Query: 164 GANMVLEEHCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEE 223
G++M +E+ R ++TG + +G A +G RV++A V +L
Sbjct: 1 GSHMYMEKLRLDN-RVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLR- 58
Query: 224 NLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNK 283
G V+ + DV VQ + G +DI + AG
Sbjct: 59 -------MEGH---------DVSSVVMDVTNTESVQNAVRSVHEQEGRVDILVACAGICI 102
Query: 284 GFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG-AGSGGSSTPL 342
T+ + + V NL G + R+M +Q K G I + +G +
Sbjct: 103 SEVKAEDMTDGQWLKQVDINLNGMFRSCQAVGRIMLEQ-KQGVIVAIGSMSGLIVNRPQQ 161
Query: 343 TAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDL 383
A Y ++K G+ Q SL E + + +P + T L
Sbjct: 162 QAAYNASKAGVHQYIRSLAAEWAPHGIRANAVAPTYIETTL 202
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} Length = 235 | Back alignment and structure |
|---|
Score = 135 bits (342), Expect = 6e-37
Identities = 50/209 (23%), Positives = 85/209 (40%), Gaps = 22/209 (10%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ VITG++RG+G+A+AR G + + +RS + LE+ + +M G
Sbjct: 3 KVAVITGASRGIGEAIARALARDGYALALGARSVD-------RLEK-IAHELMQEQG--- 51
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
+V DV + V++ S + FG +D+ + NAG FK L + + EE
Sbjct: 52 -----VEVFYHHLDVSKAESVEEFSKKVLERFGDVDVVVANAGLGY-FKRLEELSEEEFH 105
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQ 357
+++ NL+G + + ++ G + P Y STK R L
Sbjct: 106 EMIEVNLLGVWRTLKAFLDSLKRT-GGLALVTTSDV--SARLIPYGGGYVSTKWAARALV 162
Query: 358 ASLFKESKRSKVGVHTASPGMVLTDLLLS 386
+ E+ + PG V T S
Sbjct: 163 RTFQIENPDVRFF--ELRPGAVDTYFGGS 189
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 Length = 279 | Back alignment and structure |
|---|
Score = 136 bits (345), Expect = 7e-37
Identities = 58/242 (23%), Positives = 107/242 (44%), Gaps = 24/242 (9%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
R ++TG++ G+G A+AR + G +VV +R+ +EE L +AG
Sbjct: 33 RLALVTGASGGIGAAVARALVQQGLKVVGCARTVG-------NIEE-LAAECKSAGYP-- 82
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
+ CD+ D+ + + ++ +DI INNAG + LL + +
Sbjct: 83 -----GTLIPYRCDLSNEEDILSMFSAIRSQHSGVDICINNAGLARP-DTLLSGSTSGWK 136
Query: 298 QIVSTNLVGSILCTREAMRVMRDQ-PKGGHIFNMDG-AGSGGSSTPLTAVYGSTKCGLRQ 355
+ + N++ +CTREA + M+++ GHI N++ +G +T Y +TK +
Sbjct: 137 DMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRVLPLSVTHFYSATKYAVTA 196
Query: 356 LQASLFKESKRSKVGVHTA--SPGMVLTDLLLS---GSTIQNKQMFNIICEL-PETVART 409
L L +E + ++ + SPG+V T + + + L PE VA
Sbjct: 197 LTEGLRQELREAQTHIRATCISPGVVETQFAFKLHDKDPEKAAATYEQMKCLKPEDVAEA 256
Query: 410 LV 411
++
Sbjct: 257 VI 258
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 Length = 262 | Back alignment and structure |
|---|
Score = 135 bits (343), Expect = 9e-37
Identities = 47/237 (19%), Positives = 89/237 (37%), Gaps = 22/237 (9%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
++TG+ +G A A G + + + E++ + G
Sbjct: 10 CLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVR--------EKGV----- 56
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQI 299
+ CDV V + V +FG ID NNAG F P+ + +++ ++
Sbjct: 57 ----EARSYVCDVTSEEAVIGTVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARV 112
Query: 300 VSTNLVGSILCTREAMRVMRDQPKGGHIFNMD-GAGSGGSSTPLTAVYGSTKCGLRQLQA 358
++ N+ G+ + R M Q G I N AG G P A YG++K + L
Sbjct: 113 LTINVTGAFHVLKAVSRQMITQ-NYGRIVNTASMAGVKGP--PNMAAYGTSKGAIIALTE 169
Query: 359 SLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICE-LPETVARTLVPRI 414
+ + + V+ SPG + + ++ + P+ VA+ ++ +
Sbjct: 170 TAALDLAPYNIRVNAISPGYMGPGFMWERQVELQAKVGSQYFSTDPKVVAQQMIGSV 226
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 Length = 273 | Back alignment and structure |
|---|
Score = 135 bits (343), Expect = 1e-36
Identities = 48/207 (23%), Positives = 93/207 (44%), Gaps = 21/207 (10%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
++TG ++G+G A+ E G RV SR+ + + + G
Sbjct: 22 TTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWR--------EKGL--- 70
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEF-GSIDIWINNAGTNKGFKPLLQFTNEEI 296
V G CD+ + KL + F G ++I +NNAG K FT ++
Sbjct: 71 ------NVEGSVCDLLSRTERDKLMQTVAHVFDGKLNILVNNAGVVI-HKEAKDFTEKDY 123
Query: 297 EQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQL 356
I+ TN + ++ A +++ + G++ + + +G S+ P ++Y ++K + Q+
Sbjct: 124 NIIMGTNFEAAYHLSQIAYPLLKAS-QNGNVIFL-SSIAGFSALPSVSLYSASKGAINQM 181
Query: 357 QASLFKESKRSKVGVHTASPGMVLTDL 383
SL E + + V++ +PG++LT L
Sbjct: 182 TKSLACEWAKDNIRVNSVAPGVILTPL 208
|
| >1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... Length = 286 | Back alignment and structure |
|---|
Score = 136 bits (344), Expect = 1e-36
Identities = 46/234 (19%), Positives = 92/234 (39%), Gaps = 26/234 (11%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
V++TG+++G+G+ +A G VVV +RS E L++ + + G
Sbjct: 31 VIVTGASKGIGREMAYHLAKMGAHVVVTARSKE-------TLQK-VVSHCLELGA----- 77
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQI 299
A IA + + ++ A G +D+ I N TN L + +
Sbjct: 78 ---ASAHYIAGTMEDMTFAEQFVAQAGKLMGGLDMLILNHITNT-SLNLFHDDIHHVRKS 133
Query: 300 VSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQAS 359
+ N + ++ T A+ +++ G I + + +G + P+ A Y ++K L +S
Sbjct: 134 MEVNFLSYVVLTVAALPMLKQ--SNGSIVVV-SSLAGKVAYPMVAAYSASKFALDGFFSS 190
Query: 360 LFKE--SKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLV 411
+ KE R V + G++ T+ + + E A ++
Sbjct: 191 IRKEYSVSRVNVSITLCVLGLIDTETAMKAVSGIVHMQA----APKEECALEII 240
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} Length = 262 | Back alignment and structure |
|---|
Score = 135 bits (342), Expect = 1e-36
Identities = 50/222 (22%), Positives = 88/222 (39%), Gaps = 25/222 (11%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVV---ASRSSESVRMTVTELEENLKEGMMAAGG 234
+ +VI G + LG A+ F L +V+ ++ S++ ELE G
Sbjct: 12 KVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELE--------DQGA 63
Query: 235 SSKKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNE 294
KVA D+ +V KL +FA EFG +DI IN G KP+++ +
Sbjct: 64 ---------KVALYQSDLSNEEEVAKLFDFAEKEFGKVDIAINTVGKVL-KKPIVETSEA 113
Query: 295 EIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLR 354
E + + + N + ++A + M GHI + + T + Y K +
Sbjct: 114 EFDAMDTINNKVAYFFIKQAAKHMNP---NGHIITI-ATSLLAAYTGFYSTYAGNKAPVE 169
Query: 355 QLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMF 396
+ KE + ++ V+ +PG + T T ++
Sbjct: 170 HYTRAASKELMKQQISVNAIAPGPMDTSFFYGQETKESTAFH 211
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* Length = 260 | Back alignment and structure |
|---|
Score = 134 bits (340), Expect = 2e-36
Identities = 53/209 (25%), Positives = 91/209 (43%), Gaps = 25/209 (11%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
++TG +RG+G + E G V SR+ + + +T+ + G
Sbjct: 10 CTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWR--------SKGF--- 58
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEF-GSIDIWINNAGTNKGFKPLLQFTNEEI 296
KV CD+ ++ Q+L N N F G ++I +NNAG +K +T E+
Sbjct: 59 ------KVEASVCDLSSRSERQELMNTVANHFHGKLNILVNNAGIVI-YKEAKDYTVEDY 111
Query: 297 EQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGS--GGSSTPLTAVYGSTKCGLR 354
I+S N + + A ++ + G++ + S G + P AVYG+TK +
Sbjct: 112 SLIMSINFEAAYHLSVLAHPFLKAS-ERGNVVFI---SSVSGALAVPYEAVYGATKGAMD 167
Query: 355 QLQASLFKESKRSKVGVHTASPGMVLTDL 383
QL L E + + V+ PG++ T L
Sbjct: 168 QLTRCLAFEWAKDNIRVNGVGPGVIATSL 196
|
| >3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* Length = 258 | Back alignment and structure |
|---|
Score = 133 bits (337), Expect = 6e-36
Identities = 49/207 (23%), Positives = 92/207 (44%), Gaps = 21/207 (10%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVA-SRSSESVRMTVTELEENLKEGMMAAGGSS 236
+ ++TGS+RG+GKA A +G +V+ +RS ++ T E+E G
Sbjct: 5 KCALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIE--------KLGV-- 54
Query: 237 KKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEI 296
KV + +V +PA ++++ FG +D+++NNA + +P+++
Sbjct: 55 -------KVLVVKANVGQPAKIKEMFQQIDETFGRLDVFVNNAASGV-LRPVMELEETHW 106
Query: 297 EQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQL 356
+ ++ N + C +EA ++M GGHI ++ + G +K L L
Sbjct: 107 DWTMNINAKALLFCAQEAAKLMEKN-GGGHIVSI-SSLGSIRYLENYTTVGVSKAALEAL 164
Query: 357 QASLFKESKRSKVGVHTASPGMVLTDL 383
L E ++ V+ S G + TD
Sbjct: 165 TRYLAVELSPKQIIVNAVSGGAIDTDA 191
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} Length = 276 | Back alignment and structure |
|---|
Score = 133 bits (338), Expect = 6e-36
Identities = 59/209 (28%), Positives = 100/209 (47%), Gaps = 23/209 (11%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ +ITG++ G+GK +A + +G +V VA+R S+++++ E+ GG
Sbjct: 33 KRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIA--------GVGG--- 81
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
K I CDV +P V+ + + E G IDI + NAG + +L EE +
Sbjct: 82 ------KALPIRCDVTQPDQVRGMLDQMTGELGGIDIAVCNAGIVSV-QAMLDMPLEEFQ 134
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFN---MDGAGSGGSSTPLTAVYGSTKCGLR 354
+I TN+ G L + A R M DQ GG I M +G + + Y ++K +
Sbjct: 135 RIQDTNVTGVFLTAQAAARAMVDQGLGGTIITTASM--SGHIINIPQQVSHYCTSKAAVV 192
Query: 355 QLQASLFKESKRSKVGVHTASPGMVLTDL 383
L ++ E ++ V++ SPG + T+L
Sbjct: 193 HLTKAMAVELAPHQIRVNSVSPGYIRTEL 221
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} Length = 301 | Back alignment and structure |
|---|
Score = 134 bits (340), Expect = 6e-36
Identities = 66/288 (22%), Positives = 106/288 (36%), Gaps = 40/288 (13%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
R V+TG G+G A A EF G R+V++ ++ V L G
Sbjct: 32 RAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLR--------GQGF--- 80
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
G+ CDV ++ +L++ A G +D+ +NAG PL Q +++
Sbjct: 81 ------DAHGVVCDVRHLDEMVRLADEAFRLLGGVDVVFSNAGIVVA-GPLAQMNHDDWR 133
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQ 357
++ +L GSI + + +Q GGHI G YG K G+ L
Sbjct: 134 WVIDIDLWGSIHAVEAFLPRLLEQGTGGHIAFTASFA-GLVPNAGLGTYGVAKYGVVGLA 192
Query: 358 ASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICEL--------------P 403
+L +E K + +GV P +V T L+ + I+
Sbjct: 193 ETLAREVKPNGIGVSVLCPMVVETKLVSNSERIRGADYGMSATPEGAFGPLPTQDESVSA 252
Query: 404 ETVARTLVPRIRVVKGSGKAINY-LTPPRILLALVTAWLRRGRWFDDQ 450
+ VAR I + Y L ++ + R R FD+Q
Sbjct: 253 DDVARLTADAILANRL------YILPHAAARESIRRRFERIDRTFDEQ 294
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* Length = 302 | Back alignment and structure |
|---|
Score = 134 bits (340), Expect = 7e-36
Identities = 47/206 (22%), Positives = 77/206 (37%), Gaps = 18/206 (8%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ ITG GLGK + G + V+ASR + ++ T ++ + G
Sbjct: 27 KVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQIS--------SQTG--- 75
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
KV I CDV +P VQ + + G +I INNA N P + + +
Sbjct: 76 -----NKVHAIQCDVRDPDMVQNTVSELIKVAGHPNIVINNAAGNF-ISPTERLSPNAWK 129
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQ 357
I L G+ T E + + KG ++ + + S K G+ +
Sbjct: 130 TITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSI-TTIYAETGSGFVVPSASAKAGVEAMS 188
Query: 358 ASLFKESKRSKVGVHTASPGMVLTDL 383
SL E + + + PG + T
Sbjct: 189 KSLAAEWGKYGMRFNVIQPGPIKTKG 214
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* Length = 261 | Back alignment and structure |
|---|
Score = 133 bits (336), Expect = 9e-36
Identities = 57/206 (27%), Positives = 94/206 (45%), Gaps = 20/206 (9%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSS-ESVRMTVTELEENLKEGMMAAGGSS 236
+ VVITGS+ GLGK++A F +VVV RS + + E++ GG
Sbjct: 8 KVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIK--------KVGG-- 57
Query: 237 KKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEI 296
+ + DV +DV L A+ EFG +D+ INNAG + + +
Sbjct: 58 -------EAIAVKGDVTVESDVINLVQSAIKEFGKLDVMINNAGLEN-PVSSHEMSLSDW 109
Query: 297 EQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQL 356
+++ TNL G+ L +REA++ + G + NM + PL Y ++K G++ +
Sbjct: 110 NKVIDTNLTGAFLGSREAIKYFVENDIKGTVINM-SSVHEKIPWPLFVHYAASKGGMKLM 168
Query: 357 QASLFKESKRSKVGVHTASPGMVLTD 382
+L E + V+ PG + T
Sbjct: 169 TETLALEYAPKGIRVNNIGPGAINTP 194
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* Length = 265 | Back alignment and structure |
|---|
Score = 131 bits (333), Expect = 2e-35
Identities = 39/235 (16%), Positives = 77/235 (32%), Gaps = 18/235 (7%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
V+TG + G+G A L +G V +R E +R + L + G
Sbjct: 9 AVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQR------FPGA--- 59
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
++ CDV + V+ + G I +NNAG + + T+E
Sbjct: 60 ------RLFASVCDVLDALQVRAFAEACERTLGCASILVNNAGQGR-VSTFAETTDEAWS 112
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQ 357
+ + I R + + + I + + P + + G++ L
Sbjct: 113 EELQLKFFSVIHPVRAFLPQLESR-ADAAIVCV-NSLLASQPEPHMVATSAARAGVKNLV 170
Query: 358 ASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVP 412
S+ E V V+ G+V + + ++ + + +P
Sbjct: 171 RSMAFEFAPKGVRVNGILIGLVESGQWRRRFEAREERELDWAQWTAQLARNKQIP 225
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} Length = 264 | Back alignment and structure |
|---|
Score = 131 bits (333), Expect = 3e-35
Identities = 60/239 (25%), Positives = 108/239 (45%), Gaps = 29/239 (12%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ ++ITG++ G+G+ +ARE ++G ++++ +R +E + + AGG
Sbjct: 5 KVILITGASGGIGEGIARELGVAGAKILLGARRQA-------RIEA-IATEIRDAGG--- 53
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
DV + V + AV+ +G ID+ +NNAG PL +E E
Sbjct: 54 ------TALAQVLDVTDRHSVAAFAQAAVDTWGRIDVLVNNAGV-MPLSPLAAVKVDEWE 106
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGS--GGSSTPLTAVYGSTKCGLRQ 355
+++ N+ G + + +M Q + G I N+ GS S P AVY +TK +R
Sbjct: 107 RMIDVNIKGVLWGIGAVLPIMEAQ-RSGQIINI---GSIGALSVVPTAAVYCATKFAVRA 162
Query: 356 LQASLFKESKRSKVGVHTASPGMVLTDLLLS---GSTIQNKQMFNIICELPETVARTLV 411
+ L +ES +V +PG+V ++L + T+ + I P +AR +
Sbjct: 163 ISDGLRQESTNIRVT--CVNPGVVESELAGTITHEETMAAMDTYRAIALQPADIARAVR 219
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* Length = 255 | Back alignment and structure |
|---|
Score = 131 bits (331), Expect = 3e-35
Identities = 47/219 (21%), Positives = 90/219 (41%), Gaps = 21/219 (9%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ +ITG+ G+GK +A F +G VVV+ ++++ V E++ GG
Sbjct: 12 KCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQ--------QLGG--- 60
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
+ CD+ ++ L++FA+++ G +DI +NNAG +
Sbjct: 61 ------QAFACRCDITSEQELSALADFAISKLGKVDILVNNAGGGGP--KPFDMPMADFR 112
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQ 357
+ N+ ++ M GG I + + + + Y S+K L
Sbjct: 113 RAYELNVFSFFHLSQLVAPEMEKN-GGGVILTI-TSMAAENKNINMTSYASSKAAASHLV 170
Query: 358 ASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMF 396
++ + + V+ +PG +LTD L S T + +Q
Sbjct: 171 RNMAFDLGEKNIRVNGIAPGAILTDALKSVITPEIEQKM 209
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 278 | Back alignment and structure |
|---|
Score = 131 bits (333), Expect = 4e-35
Identities = 53/208 (25%), Positives = 90/208 (43%), Gaps = 19/208 (9%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
+ITGS+ G+G+A A F G +V + R +E + T ++ AAG S +
Sbjct: 9 AIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQIL--------AAGVSEQN- 59
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKG---FKPLLQFTNEEI 296
V + DV A ++ + + +FG +DI +NNAG K + E
Sbjct: 60 -----VNSVVADVTTDAGQDEILSTTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESY 114
Query: 297 EQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQL 356
+ ++ NL I T++A+ + G I N+ SG +TP Y K + Q
Sbjct: 115 DATLNLNLRSVIALTKKAVPHLSST--KGEIVNISSIASGLHATPDFPYYSIAKAAIDQY 172
Query: 357 QASLFKESKRSKVGVHTASPGMVLTDLL 384
+ + + + V++ SPG+V T
Sbjct: 173 TRNTAIDLIQHGIRVNSISPGLVATGFG 200
|
| >3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum} Length = 258 | Back alignment and structure |
|---|
Score = 131 bits (331), Expect = 5e-35
Identities = 52/209 (24%), Positives = 90/209 (43%), Gaps = 23/209 (11%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVA--SRSSESVRMTVTELEENLKEGMMAAGGS 235
+ ++TG +G+G+ ++ + G + VA + E T+ +E AA
Sbjct: 3 KVAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLIE--------AADQ- 53
Query: 236 SKKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEE 295
K + DV + A+ + A + G D+ +NNAG + KPLL+ T E+
Sbjct: 54 --------KAVFVGLDVTDKANFDSAIDEAAEKLGGFDVLVNNAGIAQ-IKPLLEVTEED 104
Query: 296 IEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD-GAGSGGSSTPLTAVYGSTKCGLR 354
++QI S N+ + A R + G I N A G P+ + Y +TK +R
Sbjct: 105 LKQIYSVNVFSVFFGIQAASRKFDELGVKGKIINAASIAAIQGF--PILSAYSTTKFAVR 162
Query: 355 QLQASLFKESKRSKVGVHTASPGMVLTDL 383
L + +E V+ +PG+V T +
Sbjct: 163 GLTQAAAQELAPKGHTVNAYAPGIVGTGM 191
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 Length = 272 | Back alignment and structure |
|---|
Score = 131 bits (331), Expect = 5e-35
Identities = 51/239 (21%), Positives = 84/239 (35%), Gaps = 29/239 (12%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
V+ITG+ G+G+ A EF ++V+ + + T + +
Sbjct: 34 VLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGL--------------- 78
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQI 299
AKV D D+ + E G + I +NNAG L + +IE+
Sbjct: 79 --GAKVHTFVVDCSNREDIYSSAKKVKAEIGDVSILVNNAGVVYT-SDLFATQDPQIEKT 135
Query: 300 VSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQAS 359
N++ T+ + M GHI + + +G S P Y S+K +
Sbjct: 136 FEVNVLAHFWTTKAFLPAMTKN-NHGHIVTV-ASAAGHVSVPFLLAYCSSKFAAVGFHKT 193
Query: 360 LFKE---SKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPRIR 415
L E + + V P V T + + ST + PE V L+ I
Sbjct: 194 LTDELAALQITGVKTTCLCPNFVNTGFIKNPSTSLGPTL------EPEEVVNRLMHGIL 246
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* Length = 277 | Back alignment and structure |
|---|
Score = 131 bits (331), Expect = 5e-35
Identities = 50/205 (24%), Positives = 76/205 (37%), Gaps = 19/205 (9%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ ITG G+G +A F+ G V+ASRS V +L A G
Sbjct: 28 KVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAG-------ATGR--- 77
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
+ ++ DV P V + A+ EFG IDI IN A N P + +
Sbjct: 78 ------RCLPLSMDVRAPPAVMAAVDQALKEFGRIDILINCAAGNF-LCPAGALSFNAFK 130
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQ 357
++ + G+ +R GG I N+ A G L GS K + +
Sbjct: 131 TVMDIDTSGTFNVSRVLYEKFFRD-HGGVIVNI-TATLGNRGQALQVHAGSAKAAVDAMT 188
Query: 358 ASLFKESKRSKVGVHTASPGMVLTD 382
L E + V++ +PG +
Sbjct: 189 RHLAVEWGPQNIRVNSLAPGPISGT 213
|
| >3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} Length = 263 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 8e-35
Identities = 50/207 (24%), Positives = 80/207 (38%), Gaps = 24/207 (11%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
R ++TG ++G+G A+AR +G V +A + + V LE
Sbjct: 13 RKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVVAGLE--------------- 57
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
+ DV + A V A++ G D+ NAG + +P + T+EE +
Sbjct: 58 -----NGGFAVEVDVTKRASVDAAMQKAIDALGGFDLLCANAGVST-MRPAVDITDEEWD 111
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD-GAGSGGSSTPLTAVYGSTKCGLRQL 356
N G L + A R G I N A G+ PL A Y ++K +
Sbjct: 112 FNFDVNARGVFLANQIACRHFLASNTKGVIVNTASLAAKVGA--PLLAHYSASKFAVFGW 169
Query: 357 QASLFKESKRSKVGVHTASPGMVLTDL 383
+L +E + V+ PG V T +
Sbjct: 170 TQALAREMAPKNIRVNCVCPGFVKTAM 196
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} Length = 254 | Back alignment and structure |
|---|
Score = 129 bits (328), Expect = 1e-34
Identities = 53/206 (25%), Positives = 87/206 (42%), Gaps = 21/206 (10%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
V++TG+ G+G+A+A++F L+ VV + + V EL G
Sbjct: 10 VIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELR--------GMGK----- 56
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQI 299
+V G+ DV + DV++ + ID+ NNAG G P+ + ++E E++
Sbjct: 57 ----EVLGVKADVSKKKDVEEFVRRTFETYSRIDVLCNNAGIMDGVTPVAEVSDELWERV 112
Query: 300 VSTNLVGSILCTREAMRVMRDQPKGGHIFNMD-GAGSGGSSTPLTAVYGSTKCGLRQLQA 358
++ NL + +R + +M Q G I N AG G A Y K GL L
Sbjct: 113 LAVNLYSAFYSSRAVIPIMLKQ-GKGVIVNTASIAGIRGG--FAGAPYTVAKHGLIGLTR 169
Query: 359 SLFKESKRSKVGVHTASPGMVLTDLL 384
S+ + PG V T++
Sbjct: 170 SIAAHYGDQGIRAVAVLPGTVKTNIG 195
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} Length = 273 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 1e-34
Identities = 53/205 (25%), Positives = 88/205 (42%), Gaps = 25/205 (12%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
VITG+T G+G A A+ F+ G RV + R + + + E+ GG
Sbjct: 32 AVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEI-----------GG----- 75
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQI 299
GI D A++ +L E G ID+ NAG PL + T E+ +
Sbjct: 76 ----GAVGIQADSANLAELDRLYEKVKAEAGRIDVLFVNAGGGS-MLPLGEVTEEQYDDT 130
Query: 300 VSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQAS 359
N+ G + ++A+ ++ G + G+ +G + TP +VY ++K LR +
Sbjct: 131 FDRNVKGVLFTVQKALPLLAR---GSSVVLT-GSTAGSTGTPAFSVYAASKAALRSFARN 186
Query: 360 LFKESKRSKVGVHTASPGMVLTDLL 384
+ K + ++T SPG T L
Sbjct: 187 WILDLKDRGIRINTLSPGPTETTGL 211
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} Length = 283 | Back alignment and structure |
|---|
Score = 130 bits (328), Expect = 2e-34
Identities = 47/206 (22%), Positives = 83/206 (40%), Gaps = 19/206 (9%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
+ITG+ G+G+A A G V R+ V E+ AGG
Sbjct: 31 ALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEIV--------GAGG----- 77
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQI 299
+ + DV + ++ V +FG +DI + NAG N + P+ E ++
Sbjct: 78 ----QAIALEADVSDELQMRNAVRDLVLKFGHLDIVVANAGINGVWAPIDDLKPFEWDET 133
Query: 300 VSTNLVGSILCTREAMRVMRDQPKGGHIFNMD-GAGSGGSSTPLTAVYGSTKCGLRQLQA 358
++ NL G+ L + ++ + GG I + G+ +TP Y +TK +
Sbjct: 134 IAVNLRGTFLTLHLTVPYLKQR-GGGAIVVVSSINGTRTFTTPGATAYTATKAAQVAIVQ 192
Query: 359 SLFKESKRSKVGVHTASPGMVLTDLL 384
L E + + V+ PG + T++
Sbjct: 193 QLALELGKHHIRVNAVCPGAIETNIS 218
|
| >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A Length = 266 | Back alignment and structure |
|---|
Score = 129 bits (327), Expect = 2e-34
Identities = 53/209 (25%), Positives = 93/209 (44%), Gaps = 25/209 (11%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ V++TG T+G+G A+ EF G + +R+ + +++ + G
Sbjct: 15 KTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQ--------KKGF--- 63
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFG-SIDIWINNAGTNKGFKPLLQFTNEEI 296
+V G CD + +KL + FG +DI INN G + KP L +T E+
Sbjct: 64 ------QVTGSVCDASLRPEREKLMQTVSSMFGGKLDILINNLGAIR-SKPTLDYTAEDF 116
Query: 297 EQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGS--GGSSTPLTAVYGSTKCGLR 354
+STNL + ++ A +++ G+I M S G S + ++Y +TK L
Sbjct: 117 SFHISTNLESAYHLSQLAHPLLKAS-GCGNIIFM---SSIAGVVSASVGSIYSATKGALN 172
Query: 355 QLQASLFKESKRSKVGVHTASPGMVLTDL 383
QL +L E + + +P ++ T L
Sbjct: 173 QLARNLACEWASDGIRANAVAPAVIATPL 201
|
| >1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A* Length = 254 | Back alignment and structure |
|---|
Score = 129 bits (326), Expect = 2e-34
Identities = 46/245 (18%), Positives = 88/245 (35%), Gaps = 39/245 (15%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+NV+ + G+G +RE + + V E+ N K
Sbjct: 6 KNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPK----------- 54
Query: 238 KNLVHAKVAGIACDVCEP-ADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEI 296
+ DV P A+ +KL ++ ++DI IN AG + +I
Sbjct: 55 -----VNITFHTYDVTVPVAESKKLLKKIFDQLKTVDILINGAGI---------LDDHQI 100
Query: 297 EQIVSTNLVGSILCTREAMRVMRDQP--KGGHIFNMDGAGS--GGSSTPLTAVYGSTKCG 352
E+ ++ N G + T + + GG I N+ S G ++ VY ++K
Sbjct: 101 ERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANI---CSVTGFNAIHQVPVYSASKAA 157
Query: 353 LRQLQASLFKESKRSKVGVHTASPGMVLTDLL--LSGSTIQNKQMFNIICEL----PETV 406
+ SL K + + V ++ +PG+ T L+ + ++ ++ E
Sbjct: 158 VVSFTNSLAKLAPITGVTAYSINPGITRTPLVHTFNSWLDVEPRVAELLLSHPTQTSEQC 217
Query: 407 ARTLV 411
+ V
Sbjct: 218 GQNFV 222
|
| >1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A Length = 251 | Back alignment and structure |
|---|
Score = 128 bits (325), Expect = 2e-34
Identities = 48/216 (22%), Positives = 82/216 (37%), Gaps = 40/216 (18%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
+ITG T G+G A+A +F+ G +V++ R S+ +
Sbjct: 9 AIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSV---------GTPD----- 54
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQI 299
++ D + KL + FG + +NNAG K + + T E ++
Sbjct: 55 ----QIQFFQHDSSDEDGWTKLFDATEKAFGPVSTLVNNAGIA-VNKSVEETTTAEWRKL 109
Query: 300 VSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSST------PLTAVYGSTKCGL 353
++ NL G TR ++ M+++ G I NM SS P Y ++K +
Sbjct: 110 LAVNLDGVFFGTRLGIQRMKNKGLGASIINM-------SSIEGFVGDPSLGAYNASKGAV 162
Query: 354 RQLQASLFKESKRSKVG-----VHTASPGMVLTDLL 384
R + S + VH PG + T L+
Sbjct: 163 RIMSKSAALDCALKDYDVRVNTVH---PGYIKTPLV 195
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A Length = 255 | Back alignment and structure |
|---|
Score = 128 bits (325), Expect = 3e-34
Identities = 41/207 (19%), Positives = 81/207 (39%), Gaps = 25/207 (12%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ ++ G T G+G A R + G V++ R+ ++ E G
Sbjct: 9 KKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEF-----------GP--- 54
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
+V + D+ + ++ L A G+ID+ NAG ++ +P Q + +
Sbjct: 55 ------RVHALRSDIADLNEIAVLGAAAGQTLGAIDLLHINAGVSE-LEPFDQVSEASYD 107
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQ 357
+ + N G+ + ++R+ GG I + + P +VY ++K L
Sbjct: 108 RQFAVNTKGAFFTVQRLTPLIRE---GGSIVFT-SSVADEGGHPGMSVYSASKAALVSFA 163
Query: 358 ASLFKESKRSKVGVHTASPGMVLTDLL 384
+ L E + V++ SPG + T
Sbjct: 164 SVLAAELLPRGIRVNSVSPGFIDTPTK 190
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} Length = 234 | Back alignment and structure |
|---|
Score = 127 bits (322), Expect = 3e-34
Identities = 58/208 (27%), Positives = 88/208 (42%), Gaps = 28/208 (13%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
V+ITG++RG+G+A AR G RV + +R + ++ ELE
Sbjct: 6 GAVLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQALAAELEG-------------- 51
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
+ DV E D + FG + +NNAG KP+ + T EE
Sbjct: 52 -------ALPLPGDVREEGDWARAVAAMEEAFGELSALVNNAGVGV-MKPVHELTLEEWR 103
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGS--GGSSTPLTAVYGSTKCGLRQ 355
++ TNL G+ L R A+ + + GG I N+ GS G + A Y ++K GL
Sbjct: 104 LVLDTNLTGAFLGIRHAVPALLRR-GGGTIVNV---GSLAGKNPFKGGAAYNASKFGLLG 159
Query: 356 LQASLFKESKRSKVGVHTASPGMVLTDL 383
L + + + + V V PG V T
Sbjct: 160 LAGAAMLDLREANVRVVNVLPGSVDTGF 187
|
| >3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} Length = 280 | Back alignment and structure |
|---|
Score = 128 bits (325), Expect = 4e-34
Identities = 49/205 (23%), Positives = 81/205 (39%), Gaps = 18/205 (8%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
++TG++ G+G+A A F G +VVV +R+ ++ E+ GG
Sbjct: 11 AIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIA--------GGGG----- 57
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQI 299
+ A +A DV + A + L AV FG +D NNAG + + E +
Sbjct: 58 ----EAAALAGDVGDEALHEALVELAVRRFGGLDTAFNNAGALGAMGEISSLSVEGWRET 113
Query: 300 VSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQAS 359
+ TNL + L + + + GG + + A Y ++K GL L +
Sbjct: 114 LDTNLTSAFLAAKYQVPAIAAL-GGGSLTFTSSFVGHTAGFAGVAPYAASKAGLIGLVQA 172
Query: 360 LFKESKRSKVGVHTASPGMVLTDLL 384
L E + V+ PG T
Sbjct: 173 LAVELGARGIRVNALLPGGTDTPAN 197
|
| >2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa} Length = 272 | Back alignment and structure |
|---|
Score = 128 bits (324), Expect = 5e-34
Identities = 54/210 (25%), Positives = 87/210 (41%), Gaps = 23/210 (10%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ ITG+T G G+A AR F +G +V+ R E ++ EL
Sbjct: 22 STLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAGELSAK------------- 68
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
+V + DV + A + + EF ++ INNAG G P ++ +
Sbjct: 69 -----TRVLPLTLDVRDRAAMSAAVDNLPEEFATLRGLINNAGLALGTDPAQSCDLDDWD 123
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGS--GGSSTPLTAVYGSTKCGLRQ 355
+V TN+ G + TR + + G I N+ GS G P + VYG TK + Q
Sbjct: 124 TMVDTNIKGLLYSTRLLLPRLIAHGAGASIVNL---GSVAGKWPYPGSHVYGGTKAFVEQ 180
Query: 356 LQASLFKESKRSKVGVHTASPGMVLTDLLL 385
+L + + + V V PG+ ++ L
Sbjct: 181 FSLNLRCDLQGTGVRVTNLEPGLCESEFSL 210
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 Length = 244 | Back alignment and structure |
|---|
Score = 127 bits (322), Expect = 5e-34
Identities = 47/208 (22%), Positives = 87/208 (41%), Gaps = 31/208 (14%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
++TG+ +G+G+ + SG +VV +R++ +L KE
Sbjct: 8 LRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNS-------DLVSLAKEC--------- 51
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
+ + D+ + +K A+ G +D+ +NNA +P L+ T E +
Sbjct: 52 -----PGIEPVCVDLGDWDATEK----ALGGIGPVDLLVNNAALVI-MQPFLEVTKEAFD 101
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGS--GGSSTPLTAVYGSTKCGLRQ 355
+ S NL ++ R M ++ G I N+ S + P Y STK +
Sbjct: 102 RSFSVNLRSVFQVSQMVARDMINRGVPGSIVNV---SSMVAHVTFPNLITYSSTKGAMTM 158
Query: 356 LQASLFKESKRSKVGVHTASPGMVLTDL 383
L ++ E K+ V++ +P +VLTD+
Sbjct: 159 LTKAMAMELGPHKIRVNSVNPTVVLTDM 186
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 297 | Back alignment and structure |
|---|
Score = 129 bits (326), Expect = 6e-34
Identities = 48/206 (23%), Positives = 81/206 (39%), Gaps = 17/206 (8%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
V+ITGS+ G+G++ A F G +V + R+ + + T ++ AG ++K
Sbjct: 29 VIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQIL--------KAGVPAEKI 80
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAG-TNKGFKPLLQFTNEEIEQ 298
+ DV E + + N + +FG IDI +NNAG E ++
Sbjct: 81 NA------VVADVTEASGQDDIINTTLAKFGKIDILVNNAGANLADGTANTDQPVELYQK 134
Query: 299 IVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQA 358
N I T++ + G I N+ +G + Y K L Q
Sbjct: 135 TFKLNFQAVIEMTQKTKEHLIKT--KGEIVNVSSIVAGPQAHSGYPYYACAKAALDQYTR 192
Query: 359 SLFKESKRSKVGVHTASPGMVLTDLL 384
+ + V V++ SPG V T +
Sbjct: 193 CTAIDLIQHGVRVNSVSPGAVATGFM 218
|
| >3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* Length = 244 | Back alignment and structure |
|---|
Score = 127 bits (321), Expect = 8e-34
Identities = 46/208 (22%), Positives = 87/208 (41%), Gaps = 31/208 (14%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
R V++TG+ +G+G+ + +G RVV SR+ +L+ ++E
Sbjct: 8 RRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQA-------DLDSLVREC--------- 51
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
+ + D+ + ++ A+ G +D+ +NNA +P L+ T E +
Sbjct: 52 -----PGIEPVCVDLGDWEATER----ALGSVGPVDLLVNNAAVAL-LQPFLEVTKEAFD 101
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGS--GGSSTPLTAVYGSTKCGLRQ 355
+ NL I ++ R + + G I N+ S + +VY STK L
Sbjct: 102 RSFEVNLRAVIQVSQIVARGLIARGVPGAIVNV---SSQCSQRAVTNHSVYCSTKGALDM 158
Query: 356 LQASLFKESKRSKVGVHTASPGMVLTDL 383
L + E K+ V+ +P +V+T +
Sbjct: 159 LTKVMALELGPHKIRVNAVNPTVVMTSM 186
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 Length = 267 | Back alignment and structure |
|---|
Score = 127 bits (322), Expect = 1e-33
Identities = 55/206 (26%), Positives = 87/206 (42%), Gaps = 19/206 (9%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
V+ITG GLG+A A G ++ + SSE + + + E A
Sbjct: 16 VLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLE-------TAPD----- 63
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQI 299
A+V DV + A V+ FG ID + NNAG P FT E +++
Sbjct: 64 ---AEVLTTVADVSDEAQVEAYVTATTERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKV 120
Query: 300 VSTNLVGSILCTREAMRVMRDQPKGGHIFNMD-GAGSGGSSTPLTAVYGSTKCGLRQLQA 358
VS NL G L + +++MR+Q G + N G G + Y + K G+ L
Sbjct: 121 VSINLRGVFLGLEKVLKIMREQ-GSGMVVNTASVGGIRGI--GNQSGYAAAKHGVVGLTR 177
Query: 359 SLFKESKRSKVGVHTASPGMVLTDLL 384
+ E R + ++ +PG + T ++
Sbjct: 178 NSAVEYGRYGIRINAIAPGAIWTPMV 203
|
| >3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} Length = 281 | Back alignment and structure |
|---|
Score = 127 bits (321), Expect = 1e-33
Identities = 53/207 (25%), Positives = 90/207 (43%), Gaps = 20/207 (9%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ VITGST G+G A+AR +G +V+ + + + + +
Sbjct: 26 KTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAP-------DEIRTVTDEVAGLSS--- 75
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
V D+ +P+++ + + FG DI +NNAG + + F E+ +
Sbjct: 76 -----GTVLHHPADMTKPSEIADMMAMVADRFGGADILVNNAGVQF-VEKIEDFPVEQWD 129
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD-GAGSGGSSTPLTAVYGSTKCGLRQL 356
+I++ NL S R A+ M+ + G I N+ G S P + Y + K G+ L
Sbjct: 130 RIIAVNLSSSFHTIRGAIPPMKKK-GWGRIINIASAHGLVAS--PFKSAYVAAKHGIMGL 186
Query: 357 QASLFKESKRSKVGVHTASPGMVLTDL 383
++ E S V V++ PG VLT L
Sbjct: 187 TKTVALEVAESGVTVNSICPGYVLTPL 213
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} Length = 256 | Back alignment and structure |
|---|
Score = 126 bits (320), Expect = 2e-33
Identities = 50/207 (24%), Positives = 86/207 (41%), Gaps = 21/207 (10%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
++TG+ G+G+A+A F +G VVV SE + AGG
Sbjct: 13 AVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIR--------QAGG--- 61
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
K G+ C+V + + + A+++FG I + +NNAG + E
Sbjct: 62 ------KAIGLECNVTDEQHREAVIKAALDQFGKITVLVNNAGGGGP--KPFDMPMSDFE 113
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQ 357
NL ++ A M+ GG I N+ + +G ++ A YGS+K + L
Sbjct: 114 WAFKLNLFSLFRLSQLAAPHMQKA-GGGAILNI-SSMAGENTNVRMASYGSSKAAVNHLT 171
Query: 358 ASLFKESKRSKVGVHTASPGMVLTDLL 384
++ + + V+ +PG + TD L
Sbjct: 172 RNIAFDVGPMGIRVNAIAPGAIKTDAL 198
|
| >4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} Length = 272 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 2e-33
Identities = 58/213 (27%), Positives = 95/213 (44%), Gaps = 20/213 (9%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVA-SRSSESVRMTVTELEENLKEGMMAAGGSSKK 238
V++TG +RG+G A+ R G RV V + + E+ V + +GG
Sbjct: 29 VLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREAADAVVAAIT--------ESGG---- 76
Query: 239 NLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQ 298
+ I DV AD+ + + +FG +D +NNAG + + + + E IE+
Sbjct: 77 -----EAVAIPGDVGNAADIAAMFSAVDRQFGRLDGLVNNAGIVDYPQRVDEMSVERIER 131
Query: 299 IVSTNLVGSILCTREAMRVMRDQ--PKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQL 356
++ N+ GSILC EA+R M +GG I N+ + S Y ++K +
Sbjct: 132 MLRVNVTGSILCAAEAVRRMSRLYSGQGGAIVNVSSMAAILGSATQYVDYAASKAAIDTF 191
Query: 357 QASLFKESKRSKVGVHTASPGMVLTDLLLSGST 389
L +E + V+ PG++ TDL SG
Sbjct: 192 TIGLAREVAAEGIRVNAVRPGIIETDLHASGGL 224
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} Length = 319 | Back alignment and structure |
|---|
Score = 127 bits (321), Expect = 3e-33
Identities = 59/316 (18%), Positives = 109/316 (34%), Gaps = 48/316 (15%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
R +TG G+G L R+ L G +V +A +S+ + LE G
Sbjct: 9 RTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEA-------EGSG--- 58
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
+V G+ DV + ++ FG + I NNAG N +P+ + + ++ +
Sbjct: 59 -----PEVMGVQLDVASREGFKMAADEVEARFGPVSILCNNAGVNLF-QPIEESSYDDWD 112
Query: 298 QIVSTNLVGSILCTREAMRVMRDQP-----KGGHIFNMDGAGSGGSSTPLTAVYGSTKCG 352
++ NL G + + M ++ KGGH+ N + +Y +TK
Sbjct: 113 WLLGVNLHGVVNGVTTFVPRMVERVKAGEQKGGHVVNTASMA-AFLAAGSPGIYNTTKFA 171
Query: 353 LRQLQASLFKESKRSKVGVHTASPGMVLTDLLLS-------------GSTIQNKQMFNII 399
+R L SL + ++GV PG+V + + S + +
Sbjct: 172 VRGLSESLHYSLLKYEIGVSVLCPGLVKSYIYASDDIRPDALKGEVKPVDKTAVERLAGV 231
Query: 400 CEL---PETVARTLVPRIRVVKGSGKAINY-LTPPRILLALVTAWLRRGRWFDDQGRALY 455
E P+ + RV++ + + P L +
Sbjct: 232 HEFGMEPDVIGA------RVIEAMKANRLHIFSHPDHKEELRE---VFDEIIAEYQDYPK 282
Query: 456 AAEADRIRNWAENRAR 471
D+ + + RA
Sbjct: 283 DPGYDQRVAFEKFRAD 298
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} Length = 253 | Back alignment and structure |
|---|
Score = 125 bits (317), Expect = 4e-33
Identities = 59/224 (26%), Positives = 93/224 (41%), Gaps = 32/224 (14%)
Query: 164 GANMVLEEHCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEE 223
+M E + ++TGS G+G+A A G VVVA ++E+ ++
Sbjct: 2 PGSMRFEN------KVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIV- 54
Query: 224 NLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNK 283
A GG +A DV +P + +++ + EFG ID +NNA
Sbjct: 55 -------ADGG---------TAISVAVDVSDPESAKAMADRTLAEFGGIDYLVNNAAIFG 98
Query: 284 GFK--PLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD-GAGSGGSST 340
G K LL E ++ +S NL G++ CTR + M + GG I N A S
Sbjct: 99 GMKLDFLLTIDPEYYKKFMSVNLDGALWCTRAVYKKMTKR-GGGAIVNQSSTAAWLYS-- 155
Query: 341 PLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLL 384
YG K G+ L L +E + ++ +PG + T+
Sbjct: 156 ---NYYGLAKVGINGLTQQLSRELGGRNIRINAIAPGPIDTEAN 196
|
| >1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A* Length = 260 | Back alignment and structure |
|---|
Score = 125 bits (317), Expect = 4e-33
Identities = 53/207 (25%), Positives = 82/207 (39%), Gaps = 20/207 (9%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ V+TGST G+G +A G +V+ E ++ G+ A G
Sbjct: 5 KVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDA-------AEIEKVRAGLAAQHG--- 54
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
KV D+ + V+ L + AV + G IDI +NNAG + F E+ +
Sbjct: 55 -----VKVLYDGADLSKGEAVRGLVDNAVRQMGRIDILVNNAGIQH-TALIEDFPTEKWD 108
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA-GSGGSSTPLTAVYGSTKCGLRQL 356
I++ NL T A+ M+ Q G I N+ A G S + Y + K G+
Sbjct: 109 AILALNLSAVFHGTAAALPHMKKQ-GFGRIINIASAHGLVAS--ANKSAYVAAKHGVVGF 165
Query: 357 QASLFKESKRSKVGVHTASPGMVLTDL 383
E+ + + PG V T L
Sbjct: 166 TKVTALETAGQGITANAICPGWVRTPL 192
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} Length = 266 | Back alignment and structure |
|---|
Score = 125 bits (317), Expect = 5e-33
Identities = 51/208 (24%), Positives = 85/208 (40%), Gaps = 19/208 (9%)
Query: 178 RNVVITG-STRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSS 236
+ V++T + G+G AR LL G VV++ + T +L G
Sbjct: 23 KVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLA--------DLGL-- 72
Query: 237 KKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEI 296
+V + CDV V L V + G +D+ +NNAG P++ T+EE
Sbjct: 73 ------GRVEAVVCDVTSTEAVDALITQTVEKAGRLDVLVNNAGLGG-QTPVVDMTDEEW 125
Query: 297 EQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQL 356
+++++ L + TR A+R R GG I N + G + + Y + K G+ L
Sbjct: 126 DRVLNVTLTSVMRATRAALRYFRGVDHGGVIVNN-ASVLGWRAQHSQSHYAAAKAGVMAL 184
Query: 357 QASLFKESKRSKVGVHTASPGMVLTDLL 384
E+ V ++ SP + L
Sbjct: 185 TRCSAIEAVEFGVRINAVSPSIARHKFL 212
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} Length = 261 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 5e-33
Identities = 52/208 (25%), Positives = 85/208 (40%), Gaps = 24/208 (11%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
+ITG+ G G+ +A+ F G +VV+ R E+ G
Sbjct: 12 ALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEI-----------GD----- 55
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQI 299
+A D+ + ADV A+++FG +DI +NNAG + EE ++I
Sbjct: 56 ----AALAVAADISKEADVDAAVEAALSKFGKVDILVNNAGIGHKPQNAELVEPEEFDRI 111
Query: 300 VSTNLVGSILCTREAMRVMRDQPKGGH---IFNMDGAGSGGSSTPLTAVYGSTKCGLRQL 356
V N+ G L T + + ++ G I N+ + G P A Y +TK + +
Sbjct: 112 VGVNVRGVYLMTSKLIPHFKENGAKGQECVILNV-ASTGAGRPRPNLAWYNATKGWVVSV 170
Query: 357 QASLFKESKRSKVGVHTASPGMVLTDLL 384
+L E +K+ V +P T LL
Sbjct: 171 TKALAIELAPAKIRVVALNPVAGETPLL 198
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} Length = 247 | Back alignment and structure |
|---|
Score = 124 bits (315), Expect = 5e-33
Identities = 44/207 (21%), Positives = 85/207 (41%), Gaps = 17/207 (8%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
R +++TG+ RG+G A AR + G VV+ R+ S+ +++ +AG
Sbjct: 15 RVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIK--------SAGQPQ- 65
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
+ + + ++L+ +EFG +D ++NA PL Q +E+
Sbjct: 66 -----PLIIALNLENATAQQYRELAARVEHEFGRLDGLLHNASIIGPRTPLEQLPDEDFM 120
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQ 357
Q++ N+ + + TR + +++ F G G YG +K L
Sbjct: 121 QVMHVNVNATFMLTRALLPLLKRSEDASIAFTSSSVGRKGR--ANWGAYGVSKFATEGLM 178
Query: 358 ASLFKE-SKRSKVGVHTASPGMVLTDL 383
+L E + V ++ +PG T +
Sbjct: 179 QTLADELEGVTAVRANSINPGATRTGM 205
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} Length = 255 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 6e-33
Identities = 56/211 (26%), Positives = 92/211 (43%), Gaps = 29/211 (13%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ ++TGS RGLG A A +G RV++ + + +V L G
Sbjct: 10 KTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLT--------RKGY--- 58
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
G+A DV + ++ + E +DI INNAG KP+++ E +
Sbjct: 59 ------DAHGVAFDVTDELAIEAAFSKLDAEGIHVDILINNAGIQYR-KPMVELELENWQ 111
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGS-----GGSSTPLTAVYGSTKCG 352
+++ TNL + L +R A + M + GG I N+ GS P A Y + K G
Sbjct: 112 KVIDTNLTSAFLVSRSAAKRMIARNSGGKIINI---GSLTSQAAR---PTVAPYTAAKGG 165
Query: 353 LRQLQASLFKESKRSKVGVHTASPGMVLTDL 383
++ L S+ E + + + PG +LTD+
Sbjct: 166 IKMLTCSMAAEWAQFNIQTNAIGPGYILTDM 196
|
| >3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} Length = 287 | Back alignment and structure |
|---|
Score = 125 bits (317), Expect = 8e-33
Identities = 54/213 (25%), Positives = 98/213 (46%), Gaps = 24/213 (11%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGD---RVVVASRSSESVRMTVTELEENLKEGMMAAGG 234
+ V+ITG++ G+GKA A E+L + + ++++A+R E + +++
Sbjct: 34 KTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNA------ 87
Query: 235 SSKKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNE 294
KV D+ + ++ EF IDI +NNAG G + Q E
Sbjct: 88 ---------KVHVAQLDITQAEKIKPFIENLPQEFKDIDILVNNAGKALGSDRVGQIATE 138
Query: 295 EIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGS--GGSSTPLTAVYGSTKCG 352
+I+ + TN+ I T+ + + + + G I N+ GS G + P ++Y ++K
Sbjct: 139 DIQDVFDTNVTALINITQAVLPIFQAK-NSGDIVNL---GSIAGRDAYPTGSIYCASKFA 194
Query: 353 LRQLQASLFKESKRSKVGVHTASPGMVLTDLLL 385
+ SL KE +K+ V +PG+V T+ L
Sbjct: 195 VGAFTDSLRKELINTKIRVILIAPGLVETEFSL 227
|
| >2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus} Length = 207 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 8e-33
Identities = 46/236 (19%), Positives = 87/236 (36%), Gaps = 41/236 (17%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
V+ITG+T GLG A AR L G ++++ R + ++ E+
Sbjct: 3 VLITGATGGLGGAFARA--LKGHDLLLSGRRAGALAELAREV------------------ 42
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQI 299
+ D+ + + + L + E G +D+ ++ G G + + + +E++
Sbjct: 43 ----GARALPADLADELEAKAL----LEEAGPLDLLVHAVGKA-GRASVREAGRDLVEEM 93
Query: 300 VSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQAS 359
++ +L+ ++ R Q KG GA P A Y + K L +
Sbjct: 94 LAAHLLT----AAFVLKHARFQ-KGARAVFF-GAYPRYVQVPGFAAYAAAKGALEAYLEA 147
Query: 360 LFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPRIR 415
KE R V + V T L + + + PE AR ++ +
Sbjct: 148 ARKELLREGVHLVLVRLPAVATGLW---APLGGPPKGAL---SPEEAARKVLEGLF 197
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} Length = 259 | Back alignment and structure |
|---|
Score = 124 bits (314), Expect = 9e-33
Identities = 52/221 (23%), Positives = 87/221 (39%), Gaps = 24/221 (10%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVA-SRSSESVRMTVTELEENLKEGMMAAGGSS 236
R +V+ G+ R +G+A A F G VV+ + ++E V E+E G
Sbjct: 9 RTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIE--------KLGR-- 58
Query: 237 KKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEI 296
I D+ A+V+ + A ++FG I ++ AG K + +
Sbjct: 59 -------SALAIKADLTNAAEVEAAISAAADKFGEIHGLVHVAGGLIARKTIAEMDEAFW 111
Query: 297 EQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD-GAGSGGSSTPLTAVYGSTKCGLRQ 355
Q++ NL L + A+ M KGG I AG G P Y ++K +
Sbjct: 112 HQVLDVNLTSLFLTAKTALPKMA---KGGAIVTFSSQAGRDGGG-PGALAYATSKGAVMT 167
Query: 356 LQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMF 396
L KE K+ V+ PGM+ T + + + ++
Sbjct: 168 FTRGLAKEVG-PKIRVNAVCPGMISTTFHDTFTKPEVRERV 207
|
| >3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum} Length = 251 | Back alignment and structure |
|---|
Score = 124 bits (313), Expect = 9e-33
Identities = 25/209 (11%), Positives = 58/209 (27%), Gaps = 35/209 (16%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+N+++ G + LG + + F +
Sbjct: 23 KNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENP------------------------ 58
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
+++ + ++ +D ++ AG G + ++
Sbjct: 59 -----NADHSFTIKDSGEEEIKSVIEKINSKSIKVDTFVCAAGGWSGGNASSDEFLKSVK 113
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQ 357
++ NL + +++ +GG GA + + T YG+TK +
Sbjct: 114 GMIDMNLYSAFASAHIGAKLLN---QGGLFVLT-GASAALNRTSGMIAYGATKAATHHII 169
Query: 358 ASLFKESKRSKVG--VHTASPGMVLTDLL 384
L E+ G P + T
Sbjct: 170 KDLASENGGLPAGSTSLGILPVTLDTPTN 198
|
| >3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens} Length = 346 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 1e-32
Identities = 50/236 (21%), Positives = 96/236 (40%), Gaps = 23/236 (9%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
V ITG++RG+GKA+A + G +V+A+++++ + + +E + A GG
Sbjct: 46 CTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEE-IEAVGG--- 101
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
K DV + + A+ +FG IDI +NNA L + ++
Sbjct: 102 ------KALPCIVDVRDEQQISAAVEKAIKKFGGIDILVNNASAIS-LTNTLDTPTKRLD 154
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNM-DGAGSGGSSTPLTAVYGSTKCGLRQL 356
+++ N G+ L ++ + ++ K HI N+ Y K G+
Sbjct: 155 LMMNVNTRGTYLASKACIPYLKKS-KVAHILNISPPLNLNPVWFKQHCAYTIAKYGMSMY 213
Query: 357 QASLFKESKRSKVGVHTASPG-MVLTDL--LLSGSTIQNKQMFNIICELPETVART 409
+ +E K ++ V+ P + T +L G I++ C + +A
Sbjct: 214 VLGMAEEFK-GEIAVNALWPKTAIHTAAMDMLGGPGIES------QCRKVDIIADA 262
|
| >3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum} Length = 245 | Back alignment and structure |
|---|
Score = 123 bits (312), Expect = 1e-32
Identities = 44/232 (18%), Positives = 83/232 (35%), Gaps = 28/232 (12%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ V+TG+T G+G + ++ L V R+ E L L E
Sbjct: 6 KIAVVTGATGGMGIEIVKD-LSRDHIVYALGRNPE-------HLAA-LAEI--------- 47
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
V I D+ + + + + +D ++ A + + + E
Sbjct: 48 -----EGVEPIESDIVKEVLEEGGVD-KLKNLDHVDTLVHAAAVARD-TTIEAGSVAEWH 100
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQ 357
+ N++ +R+ + +R G + + +G+G P +Y ++K LR L
Sbjct: 101 AHLDLNVIVPAELSRQLLPALRA--ASGCVIYI-NSGAGNGPHPGNTIYAASKHALRGLA 157
Query: 358 ASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVART 409
+ KE + + V T SPG T +L Q I P+ +A
Sbjct: 158 DAFRKEEANNGIRVSTVSPGPTNTPMLQGLMDSQGTNFRPEIYIEPKEIANA 209
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} Length = 267 | Back alignment and structure |
|---|
Score = 124 bits (314), Expect = 1e-32
Identities = 59/220 (26%), Positives = 100/220 (45%), Gaps = 23/220 (10%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVA-SRSSESVRMTVTELEENLKEGMMAAGGSS 236
+ ++TG++RG+G A+A G VV+ + + + ++E AAGG
Sbjct: 28 KVAIVTGASRGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIE--------AAGG-- 77
Query: 237 KKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEI 296
K DV +PA V++L A FG +D+ +NNAG + + +
Sbjct: 78 -------KALTAQADVSDPAAVRRLFATAEEAFGGVDVLVNNAGIMP-LTTIAETGDAVF 129
Query: 297 EQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQL 356
+++++ NL G+ REA + +R GG I NM G P +Y + K G+ +
Sbjct: 130 DRVIAVNLKGTFNTLREAAQRLRV---GGRIINM-STSQVGLLHPSYGIYAAAKAGVEAM 185
Query: 357 QASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMF 396
L KE + + V+ +PG TDL L G + + + F
Sbjct: 186 THVLSKELRGRDITVNAVAPGPTATDLFLEGKSDEVRDRF 225
|
| >1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2 Length = 265 | Back alignment and structure |
|---|
Score = 124 bits (313), Expect = 1e-32
Identities = 48/212 (22%), Positives = 76/212 (35%), Gaps = 23/212 (10%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ +++TG RG+G A R +G V V RS+ ++ + G
Sbjct: 15 KTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGK-------EFGV--- 64
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
K CDV V K + G I I NAG + KP + T+E+
Sbjct: 65 ------KTKAYQCDVSNTDIVTKTIQQIDADLGPISGLIANAGVSVV-KPATELTHEDFA 117
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG-AGSGGSSTPLT-----AVYGSTKC 351
+ N+ G R ++ + + G I + + + L Y S+K
Sbjct: 118 FVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQSSLNGSLTQVFYNSSKA 177
Query: 352 GLRQLQASLFKESKRSKVGVHTASPGMVLTDL 383
L L E + + V+ SPG V TD
Sbjct: 178 ACSNLVKGLAAEWASAGIRVNALSPGYVNTDQ 209
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} Length = 277 | Back alignment and structure |
|---|
Score = 124 bits (314), Expect = 1e-32
Identities = 51/205 (24%), Positives = 88/205 (42%), Gaps = 23/205 (11%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
++TG+ G+G A+AR G V+ A ++ T++ G
Sbjct: 32 AIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKI-----------GC----- 75
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQI 299
A DV + + + + V FG +D + NAG L+ T E+ +++
Sbjct: 76 ----GAAACRVDVSDEQQIIAMVDACVAAFGGVDKLVANAGVV-HLASLIDTTVEDFDRV 130
Query: 300 VSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQAS 359
++ NL G+ LCT+ A M ++ GG I N+ + +G + T YG +K G+ QL
Sbjct: 131 IAINLRGAWLCTKHAAPRMIER-GGGAIVNL-SSLAGQVAVGGTGAYGMSKAGIIQLSRI 188
Query: 360 LFKESKRSKVGVHTASPGMVLTDLL 384
E + S + +T P V T +
Sbjct: 189 TAAELRSSGIRSNTLLPAFVDTPMQ 213
|
| >2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens} Length = 260 | Back alignment and structure |
|---|
Score = 123 bits (312), Expect = 2e-32
Identities = 52/251 (20%), Positives = 93/251 (37%), Gaps = 38/251 (15%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ V+TG++RG+G+ +A + +G V + R +++R+ E + + GG
Sbjct: 6 QVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQ--------SLGG--- 54
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNE-FGSIDIWINNAG------TNKGFKPLLQ 290
+ + CD + ++V+ L E G +D+ +NNA N K +
Sbjct: 55 ------QCVPVVCDSSQESEVRSLFEQVDREQQGRLDVLVNNAYAGVQTILNTRNKAFWE 108
Query: 291 FTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNM-DGAGSGGSSTPLTAVYGST 349
+ I + L G C+ R+M G I + YG
Sbjct: 109 TPASMWDDINNVGLRGHYFCSVYGARLMVPA-GQGLIVVISSPGSLQY---MFNVPYGVG 164
Query: 350 KCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLL---------LSGSTIQNKQMFNIIC 400
K +L A E +R V + PG+V T+LL L ++ +
Sbjct: 165 KAACDKLAADCAHELRRHGVSCVSLWPGIVQTELLKEHMAKEEVLQDPVLKQFKSAFSSA 224
Query: 401 ELPETVARTLV 411
E E + +V
Sbjct: 225 ETTELSGKCVV 235
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 Length = 267 | Back alignment and structure |
|---|
Score = 124 bits (313), Expect = 2e-32
Identities = 56/210 (26%), Positives = 84/210 (40%), Gaps = 31/210 (14%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
++TG+ +G+G+A A LL G +V + + E+ L E +
Sbjct: 10 ALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQ----------- 58
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQI 299
K I CDV + ++ V+ FG +DI +NNAG N + E+
Sbjct: 59 ----KTLFIQCDVADQQQLRDTFRKVVDHFGRLDILVNNAGVN---------NEKNWEKT 105
Query: 300 VSTNLVGSILCTREAMRVMRDQPKG--GHIFNMD-GAGSGGSSTPLTAVYGSTKCGLRQL 356
+ NLV I T + M Q G G I NM AG VY ++K G+
Sbjct: 106 LQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPV--AQQPVYCASKHGIVGF 163
Query: 357 --QASLFKESKRSKVGVHTASPGMVLTDLL 384
A+L S V ++ PG V T +L
Sbjct: 164 TRSAALAANLMNSGVRLNAICPGFVNTAIL 193
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* Length = 247 | Back alignment and structure |
|---|
Score = 123 bits (312), Expect = 2e-32
Identities = 57/209 (27%), Positives = 88/209 (42%), Gaps = 25/209 (11%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ +ITG++ G+G+A AR G V +A+R E +L L + + AAG
Sbjct: 8 KVALITGASSGIGEATARALAAEGAAVAIAARRVE-------KLRA-LGDELTAAGA--- 56
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
KV + DV + V V G +DI +NNAG P+ +
Sbjct: 57 ------KVHVLELDVADRQGVDAAVASTVEALGGLDILVNNAGI-MLLGPVEDADTTDWT 109
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGS--GGSSTPLTAVYGSTKCGLRQ 355
+++ TNL+G + TR A+ + G + M S G + AVY +TK G+
Sbjct: 110 RMIDTNLLGLMYMTRAALPHLLRS--KGTVVQM---SSIAGRVNVRNAAVYQATKFGVNA 164
Query: 356 LQASLFKESKRSKVGVHTASPGMVLTDLL 384
+L +E V V PG T+L
Sbjct: 165 FSETLRQEVTERGVRVVVIEPGTTDTELR 193
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} Length = 267 | Back alignment and structure |
|---|
Score = 124 bits (313), Expect = 2e-32
Identities = 47/206 (22%), Positives = 89/206 (43%), Gaps = 22/206 (10%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ ++TGST G+GKA+A + G V++ R E+V T+ E+ A
Sbjct: 11 KTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIR--------AQYPD-- 60
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
A + + D+ Q + + ++ +DI INN G + +E+
Sbjct: 61 -----AILQPVVADLGTEQGCQDV----IEKYPKVDILINNLGIFEP-VEYFDIPDEDWF 110
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQ 357
++ N++ + TR ++ M ++ K G + + + + + A Y +TK L
Sbjct: 111 KLFEVNIMSGVRLTRSYLKKMIER-KEGRVIFI-ASEAAIMPSQEMAHYSATKTMQLSLS 168
Query: 358 ASLFKESKRSKVGVHTASPGMVLTDL 383
SL + + + V V+T PG LT+
Sbjct: 169 RSLAELTTGTNVTVNTIMPGSTLTEG 194
|
| >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} Length = 250 | Back alignment and structure |
|---|
Score = 122 bits (310), Expect = 3e-32
Identities = 53/207 (25%), Positives = 90/207 (43%), Gaps = 20/207 (9%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
++TG++ G G A+A FL GDRV S+E++ T A
Sbjct: 5 AIVTGASSGNGLAIATRFLARGDRVAALDLSAETLEETARTHWH-------AYAD----- 52
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAG--TNKGFKPLLQFTNEEIE 297
KV + DV + DV + +FG+ID+ +NNAG N L E+ +
Sbjct: 53 ----KVLRVRADVADEGDVNAAIAATMEQFGAIDVLVNNAGITGNSEAGVLHTTPVEQFD 108
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQ 357
++++ N+ G L R + M Q G I N+ + + + P + Y ++K + QL
Sbjct: 109 KVMAVNVRGIFLGCRAVLPHMLLQ-GAGVIVNI-ASVASLVAFPGRSAYTTSKGAVLQLT 166
Query: 358 ASLFKESKRSKVGVHTASPGMVLTDLL 384
S+ + S + + PGM+ T +
Sbjct: 167 KSVAVDYAGSGIRCNAVCPGMIETPMT 193
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 Length = 274 | Back alignment and structure |
|---|
Score = 123 bits (311), Expect = 3e-32
Identities = 52/235 (22%), Positives = 94/235 (40%), Gaps = 24/235 (10%)
Query: 181 VITGSTRGLGKALAREFLLSGDRVVVA-SRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
+ TG+ RG+G+ +A E G VVV SS++ V EL+ G
Sbjct: 25 LTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELK--------KLGA----- 71
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQI 299
+ I D+ +P++V L + AV+ FG +D ++N+G + L+ T E +++
Sbjct: 72 ----QGVAIQADISKPSEVVALFDKAVSHFGGLDFVMSNSGMEV-WCDELEVTQELFDKV 126
Query: 300 VSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQAS 359
+ N G ++ ++ R GG I + + P A+Y +K + +
Sbjct: 127 FNLNTRGQFFVAQQGLKHCRR---GGRIILTSSIAAVMTGIPNHALYAGSKAAVEGFCRA 183
Query: 360 LFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPRI 414
+ V V+ +PG V TD+ S + + E + L
Sbjct: 184 FAVDCGAKGVTVNCIAPGGVKTDMFDENSWHYAPGGYKGM--PQEKIDEGLANMN 236
|
| >3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti} Length = 260 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 4e-32
Identities = 56/207 (27%), Positives = 88/207 (42%), Gaps = 29/207 (14%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ VVITG+++G+G L R + RVV SRS + +A
Sbjct: 29 KVVVITGASQGIGAGLVRAYRDRNYRVVATSRSIKP-----------------SADP--- 68
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
+ +A D+ +P ++ + FG ID +NNAG KP ++ T E+ +
Sbjct: 69 ------DIHTVAGDISKPETADRIVREGIERFGRIDSLVNNAGVFL-AKPFVEMTQEDYD 121
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD-GAGSGGSSTPLTAVYGSTKCGLRQL 356
+ N+ G T+ A M Q GHI ++ +A+ TK GL +
Sbjct: 122 HNLGVNVAGFFHITQRAAAEMLKQ-GSGHIVSITTSLVDQPMVGMPSALASLTKGGLNAV 180
Query: 357 QASLFKESKRSKVGVHTASPGMVLTDL 383
SL E RS V V+ SPG++ T +
Sbjct: 181 TRSLAMEFSRSGVRVNAVSPGVIKTPM 207
|
| >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 280 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 6e-32
Identities = 54/233 (23%), Positives = 93/233 (39%), Gaps = 21/233 (9%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
V+ITGS+ G+G+ A F G V + RSSE + T + + +G S K+
Sbjct: 9 VIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILK--------SGVSEKQ- 59
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAG---TNKGFKPLLQFTNEEI 296
V + DV ++ N + +FG ID+ +NNAG + +
Sbjct: 60 -----VNSVVADVTTEDGQDQIINSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIY 114
Query: 297 EQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQL 356
+ + NL I T++ + G I N+ +G + P Y K L Q
Sbjct: 115 HKTLKLNLQAVIEMTKKVKPHLVAS--KGEIVNVSSIVAGPQAQPDFLYYAIAKAALDQY 172
Query: 357 QASLFKESKRSKVGVHTASPGMVLTDLL--LSGSTIQNKQMFNIICELPETVA 407
S + + + V++ SPGMV T + +++ +N + E +
Sbjct: 173 TRSTAIDLAKFGIRVNSVSPGMVETGFTNAMGMPDQASQKFYNFMASHKECIP 225
|
| >3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis} Length = 279 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 6e-32
Identities = 44/210 (20%), Positives = 82/210 (39%), Gaps = 25/210 (11%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ +TGS+ G+G A+A + +G V + S + + G
Sbjct: 35 KVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEKAEHLQK--------TYGV--- 83
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLL-QFTNEEI 296
C++ +P V++ + +FG+ID+++ NAG P + +
Sbjct: 84 ------HSKAYKCNISDPKSVEETISQQEKDFGTIDVFVANAGVTWTQGPEIDVDNYDSW 137
Query: 297 EQIVSTNLVGSILCTREAMRVMRDQPKGGHIFN---MDGAGSGGSSTPLTAVYGSTKCGL 353
+I+S +L G C+ ++ + G + + +G + L A Y + K
Sbjct: 138 NKIISVDLNGVYYCSHNIGKIFKKN-GKGSLIITSSI--SGKIVNIPQLQAPYNTAKAAC 194
Query: 354 RQLQASLFKESKRSKVGVHTASPGMVLTDL 383
L SL E V+T SPG + TD+
Sbjct: 195 THLAKSLAIEW-APFARVNTISPGYIDTDI 223
|
| >3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} Length = 285 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 8e-32
Identities = 38/205 (18%), Positives = 77/205 (37%), Gaps = 12/205 (5%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ + I+G +RG+G A+A+ G V + ++S+E + KE + AGG
Sbjct: 10 KTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKE-IEEAGG--- 65
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
+ I D+ + V V +FG IDI +NNA + + + +
Sbjct: 66 ------QALPIVGDIRDGDAVAAAVAKTVEQFGGIDICVNNASAIN-LGSIEEVPLKRFD 118
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQ 357
+ + G+ ++ + M+ + HI + Y K G+
Sbjct: 119 LMNGIQVRGTYAVSQSCIPHMKGR-DNPHILTLSPPIRLEPKWLRPTPYMMAKYGMTLCA 177
Query: 358 ASLFKESKRSKVGVHTASPGMVLTD 382
+ +E + + + +T P +
Sbjct: 178 LGIAEELRDAGIASNTLWPRTTVAT 202
|
| >3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A* Length = 248 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 1e-31
Identities = 55/207 (26%), Positives = 90/207 (43%), Gaps = 26/207 (12%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
V++TG+T G G+ + R F+ G +V+ R E ++ EL
Sbjct: 3 VLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELG----------------- 45
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQI 299
+ DV A ++++ E+ +IDI +NNAG G +P + + E+ E +
Sbjct: 46 ---DNLYIAQLDVRNRAAIEEMLASLPAEWCNIDILVNNAGLALGMEPAHKASVEDWETM 102
Query: 300 VSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGS--GGSSTPLTAVYGSTKCGLRQLQ 357
+ TN G + TR + M ++ GHI N+ GS G VYG+TK +RQ
Sbjct: 103 IDTNNKGLVYMTRAVLPGMVER-NHGHIINI---GSTAGSWPYAGGNVYGATKAFVRQFS 158
Query: 358 ASLFKESKRSKVGVHTASPGMVLTDLL 384
+L + + V V PG+V
Sbjct: 159 LNLRTDLHGTAVRVTDIEPGLVGGTEF 185
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} Length = 271 | Back alignment and structure |
|---|
Score = 121 bits (307), Expect = 1e-31
Identities = 48/207 (23%), Positives = 88/207 (42%), Gaps = 22/207 (10%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVA-SRSSESVRMTVTELEENLKEGMMAAGGSS 236
+ +TG +RG+G A+A+ L G V + ++E + V+E+E AGG
Sbjct: 32 KTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIE--------QAGG-- 81
Query: 237 KKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEI 296
+ I D + +++ V G +DI +N+AG PL + T +
Sbjct: 82 -------RAVAIRADNRDAEAIEQAIRETVEALGGLDILVNSAGIWH-SAPLEETTVADF 133
Query: 297 EQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQL 356
+++++ N + R A R + D GG I + + P ++Y ++K L L
Sbjct: 134 DEVMAVNFRAPFVAIRSASRHLGD---GGRIITIGSNLAELVPWPGISLYSASKAALAGL 190
Query: 357 QASLFKESKRSKVGVHTASPGMVLTDL 383
L ++ + V+ PG TD+
Sbjct: 191 TKGLARDLGPRGITVNIVHPGSTDTDM 217
|
| >3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} Length = 274 | Back alignment and structure |
|---|
Score = 121 bits (307), Expect = 1e-31
Identities = 44/205 (21%), Positives = 78/205 (38%), Gaps = 13/205 (6%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ + ITG++RG+G A+A G V +A++S+ + + + AAGG
Sbjct: 7 KTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAA-VNAAGG--- 62
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
+ + CD+ E V+ V+ FG IDI +NNA + L + +
Sbjct: 63 ------QGLALKCDIREEDQVRAAVAATVDTFGGIDILVNNASAIW-LRGTLDTPMKRFD 115
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG-AGSGGSSTPLTAVYGSTKCGLRQL 356
+ N GS +C + + + HI + + Y K G+ +
Sbjct: 116 LMQQVNARGSFVCAQACLPHLLQA-PNPHILTLAPPPSLNPAWWGAHTGYTLAKMGMSLV 174
Query: 357 QASLFKESKRSKVGVHTASPGMVLT 381
L E V ++ P V+
Sbjct: 175 TLGLAAEFGPQGVAINALWPRTVIA 199
|
| >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* Length = 260 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 1e-31
Identities = 49/206 (23%), Positives = 82/206 (39%), Gaps = 25/206 (12%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
+++G RG+G + R + G +VV E + EL
Sbjct: 10 ALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAEL-----------AD----- 53
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQI 299
+ DV +PA + + AV FG + + +NNAG + + E ++I
Sbjct: 54 ----AARYVHLDVTQPAQWKAAVDTAVTAFGGLHVLVNNAGIL-NIGTIEDYALTEWQRI 108
Query: 300 VSTNLVGSILCTREAMRVMRDQPKGGHIFNMD-GAGSGGSSTPLTAVYGSTKCGLRQLQA 358
+ NL G L R ++ M++ G I N+ G G+ Y +TK +R L
Sbjct: 109 LDVNLTGVFLGIRAVVKPMKEA-GRGSIINISSIEGLAGT--VACHGYTATKFAVRGLTK 165
Query: 359 SLFKESKRSKVGVHTASPGMVLTDLL 384
S E S + V++ PG+V T +
Sbjct: 166 STALELGPSGIRVNSIHPGLVKTPMT 191
|
| >1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 Length = 270 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 2e-31
Identities = 52/205 (25%), Positives = 87/205 (42%), Gaps = 24/205 (11%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
VV+TG RG+G + R F+ SG RVV+ + R EL
Sbjct: 12 VVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELPG---------------- 55
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQI 299
I CDV + DV+ L + + FG +D +NNAG + + + + + Q+
Sbjct: 56 -----AVFILCDVTQEDDVKTLVSETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQL 110
Query: 300 VSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQAS 359
+ NL+G+ T+ A+ +R G++ N+ + G Y +TK + + +
Sbjct: 111 LELNLLGTYTLTKLALPYLRKS--QGNVINI-SSLVGAIGQAQAVPYVATKGAVTAMTKA 167
Query: 360 LFKESKRSKVGVHTASPGMVLTDLL 384
L + V V+ SPG + T L
Sbjct: 168 LALDESPYGVRVNCISPGNIWTPLW 192
|
| >1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A* Length = 259 | Back alignment and structure |
|---|
Score = 121 bits (305), Expect = 2e-31
Identities = 54/253 (21%), Positives = 88/253 (34%), Gaps = 41/253 (16%)
Query: 180 VVITGSTRGLGKALAREF---LLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSS 236
V+TG++RG G+ALA + L G ++V++RS +R EL +
Sbjct: 9 CVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDL-------- 60
Query: 237 KKNLVHAKVAGIACDVCEPADVQKL----SNFAVNEFGSIDIWINNAGT--NKGFKPLLQ 290
KV A D+ A VQ+L E + INNA T + L
Sbjct: 61 -------KVVLAAADLGTEAGVQRLLSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNV 113
Query: 291 FTNEEIEQIVSTNLVGSILCTREAMRVMRDQP-KGGHIFNMDGAGSGGSSTPLT--AVYG 347
E+ + NL + T + +D P + N+ S + P +Y
Sbjct: 114 NDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNI---SSLCALQPYKGWGLYC 170
Query: 348 STKCGLRQLQASLFKESKRSKVGVHTASPGMVLTD----LLLSGSTIQNKQMFNIICEL- 402
+ K L L E V V + +PG + D + + + +
Sbjct: 171 AGKAARDMLYQVLAAEEP--SVRVLSYAPGPLDNDMQQLARETSKDPELRSKLQKLKSDG 228
Query: 403 ----PETVARTLV 411
T A+ L+
Sbjct: 229 ALVDCGTSAQKLL 241
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 Length = 267 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 2e-31
Identities = 58/206 (28%), Positives = 92/206 (44%), Gaps = 18/206 (8%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
R ++TG +RGLG +A+ +G VVVASR+ E +L E G
Sbjct: 22 RVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTE-------KYGV--- 71
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
+ CDV +V+KL +FG +D +N AG N+ P +F +E
Sbjct: 72 ------ETMAFRCDVSNYEEVKKLLEAVKEKFGKLDTVVNAAGINRR-HPAEEFPLDEFR 124
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQ 357
Q++ NL G+ REA ++R+ I N+ + P + Y ++K G+ L
Sbjct: 125 QVIEVNLFGTYYVCREAFSLLRES-DNPSIINIGSLTVEEVTMPNISAYAASKGGVASLT 183
Query: 358 ASLFKESKRSKVGVHTASPGMVLTDL 383
+L KE R + V+ +PG T +
Sbjct: 184 KALAKEWGRYGIRVNVIAPGWYRTKM 209
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A Length = 270 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 2e-31
Identities = 60/233 (25%), Positives = 98/233 (42%), Gaps = 22/233 (9%)
Query: 181 VITGSTRGLGKALAREFLLSGDRVVVA-SRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
++TGS RG+G A+A G +VVV + S++ V+E++ A G
Sbjct: 22 LVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIK--------ALGS----- 68
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQI 299
I D+ + ++ KL + AV FG +DI ++N+G F L T EE +++
Sbjct: 69 ----DAIAIKADIRQVPEIVKLFDQAVAHFGHLDIAVSNSGVVS-FGHLKDVTEEEFDRV 123
Query: 300 VSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQAS 359
S N G REA R + + GG I S S P ++Y +K +
Sbjct: 124 FSLNTRGQFFVAREAYRHLTE---GGRIVLTSSNTSKDFSVPKHSLYSGSKGAVDSFVRI 180
Query: 360 LFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVP 412
K+ K+ V+ +PG +TD+ S + E + +A P
Sbjct: 181 FSKDCGDKKITVNAVAPGGTVTDMFHEVSHHYIPNGTSYTAEQRQQMAAHASP 233
|
| >3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* Length = 258 | Back alignment and structure |
|---|
Score = 121 bits (305), Expect = 2e-31
Identities = 53/217 (24%), Positives = 91/217 (41%), Gaps = 34/217 (15%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSES-VRMTVTELEENLKEGMMAAGGSS 236
+ V+ITGS++G+G A AR F +G +V + R + + + T+ + A GG
Sbjct: 8 KRVLITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMR--------ADGG-- 57
Query: 237 KKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEI 296
A A D+ Q+L + V +FG ID+ INNAG G KPL + +
Sbjct: 58 -------DAAFFAADLATSEACQQLVDEFVAKFGGIDVLINNAGGLVGRKPLPEIDDTFY 110
Query: 297 EQIVSTNLVGSILCTREAMRVMRDQP----KGGHIFNM------DGAGSGGSSTPLTAVY 346
+ ++ N+ ++ T+ A+ + + + + G G G +Y
Sbjct: 111 DAVMDANIRSVVMTTKFALPHLAAAAKASGQTSAVISTGSIAGHTGGGPGA------GLY 164
Query: 347 GSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDL 383
G+ K L + + + V + SPG V T
Sbjct: 165 GAAKAFLHNVHKNWVDFHTKDGVRFNIVSPGTVDTAF 201
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* Length = 254 | Back alignment and structure |
|---|
Score = 120 bits (304), Expect = 2e-31
Identities = 63/206 (30%), Positives = 91/206 (44%), Gaps = 25/206 (12%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
V+ITG RGLG AR+ + +G RVV+A E T EL G
Sbjct: 8 VIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAREL-----------GD----- 51
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQI 299
DV D Q++ +A EFGS+D +NNAG + L + E ++
Sbjct: 52 ----AARYQHLDVTIEEDWQRVVAYAREEFGSVDGLVNNAGIS-TGMFLETESVERFRKV 106
Query: 300 VSTNLVGSILCTREAMRVMRDQPKGGHIFNMD-GAGSGGSSTPLTAVYGSTKCGLRQLQA 358
V NL G + + + M+D GG I N+ AG G LT+ YG++K G+R L
Sbjct: 107 VEINLTGVFIGMKTVIPAMKDA-GGGSIVNISSAAGLMGL--ALTSSYGASKWGVRGLSK 163
Query: 359 SLFKESKRSKVGVHTASPGMVLTDLL 384
E ++ V++ PGM T +
Sbjct: 164 LAAVELGTDRIRVNSVHPGMTYTPMT 189
|
| >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} Length = 260 | Back alignment and structure |
|---|
Score = 120 bits (304), Expect = 3e-31
Identities = 40/205 (19%), Positives = 83/205 (40%), Gaps = 19/205 (9%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ V+T + GLG A A E +G R+++ SR+ E + + + + +G
Sbjct: 8 KLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIAS------LVSGA--- 58
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
+V +A D+ EP D+ +L + G DI + + G + ++ E+ +
Sbjct: 59 ------QVDIVAGDIREPGDIDRLFE-KARDLGGADILVYSTGGPRP-GRFMELGVEDWD 110
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQ 357
+ ++ R A M ++ G + + G+ + A+ + + +
Sbjct: 111 ESYRLLARSAVWVGRRAAEQMVEK-GWGRMVYI-GSVTLLRPWQDLALSNIMRLPVIGVV 168
Query: 358 ASLFKESKRSKVGVHTASPGMVLTD 382
+L E V V+ P ++LTD
Sbjct: 169 RTLALELAPHGVTVNAVLPSLILTD 193
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} Length = 230 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 3e-31
Identities = 46/235 (19%), Positives = 86/235 (36%), Gaps = 37/235 (15%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
+VITG++ GLG LA+ + G + RS + L N
Sbjct: 4 IVITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTVTNCLSNN--------------- 48
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQI 299
V A D+ +V++L +++AG + F L + E+I+ +
Sbjct: 49 -----VGYRARDLASHQEVEQLFEQL---DSIPSTVVHSAG-SGYFGLLQEQDPEQIQTL 99
Query: 300 VSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGS--GGSSTPLTAVYGSTKCGLRQLQ 357
+ NL +I RE ++ +DQ ++ + S + Y + K ++ L
Sbjct: 100 IENNLSSAINVLRELVKRYKDQ--PVNVVMI---MSTAAQQPKAQESTYCAVKWAVKGLI 154
Query: 358 ASLFKESKRSKVGVHTASPGMVLTDLL-LSGSTIQNKQMFNIICELPETVARTLV 411
S+ E K + + PG + T+ SG ++ + E A +
Sbjct: 155 ESVRLELKGKPMKIIAVYPGGMATEFWETSGKSLDTSSFMS-----AEDAALMIH 204
|
| >3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti} Length = 324 | Back alignment and structure |
|---|
Score = 122 bits (307), Expect = 4e-31
Identities = 60/314 (19%), Positives = 107/314 (34%), Gaps = 36/314 (11%)
Query: 177 PRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSS 236
+ ++ITG++ G G+ A +G RV + R + E
Sbjct: 5 KKIILITGASSGFGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAGFARD-------- 56
Query: 237 KKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEI 296
+ + DV V + + + E G ID+ I+NAG F P FT E+
Sbjct: 57 ----NDVDLRTLELDVQSQVSVDRAIDQIIGEDGRIDVLIHNAGHM-VFGPAEAFTPEQF 111
Query: 297 EQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQL 356
++ N++ + R A+ MR Q K G + + + S G + P A Y + K + +
Sbjct: 112 AELYDINVLSTQRVNRAALPHMRRQ-KHGLLIWISSSSSAGGTPPYLAPYFAAKAAMDAI 170
Query: 357 QASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPRIRV 416
+E R + PG + + + + P +
Sbjct: 171 AVQYARELSRWGIETSIIVPGAFTSG-------TNHFAHSGVPDDHARQAEYEAGPNAGL 223
Query: 417 VKGSGKAINYLTPP--------RILLALVTAW-----LRRGRWFDDQGRALYAAEADRIR 463
+ KA + PP ++ +V R + G + + DR+R
Sbjct: 224 GEEIKKAFAAIVPPDADVSLVADAIVRVVGTASGKRPFRVHVDPAEDGADVGFSVLDRLR 283
Query: 464 NWAENRARFSFTDA 477
AE R +D
Sbjct: 284 --AEMLHRVGLSDL 295
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} Length = 281 | Back alignment and structure |
|---|
Score = 120 bits (304), Expect = 4e-31
Identities = 48/220 (21%), Positives = 92/220 (41%), Gaps = 25/220 (11%)
Query: 177 PRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSS 236
+ ++TG++ G G+A+A + +GD V+ +R +E + +L +
Sbjct: 5 AKVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTE----ALDDLVAAYPDR-------- 52
Query: 237 KKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAG-TNKGFKPLLQFTNEE 295
I+ DV + + ++ + +G +D+ +NNAG T G + T E
Sbjct: 53 --------AEAISLDVTDGERIDVVAADVLARYGRVDVLVNNAGRTQVG--AFEETTERE 102
Query: 296 IEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQ 355
+ + ++ G TR + MR++ G + N+ + G S + Y +TK L Q
Sbjct: 103 LRDLFELHVFGPARLTRALLPQMRER-GSGSVVNI-SSFGGQLSFAGFSAYSATKAALEQ 160
Query: 356 LQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQM 395
L L E + V PG T+L G+ +++
Sbjct: 161 LSEGLADEVAPFGIKVLIVEPGAFRTNLFGKGAAYFSEEN 200
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* Length = 283 | Back alignment and structure |
|---|
Score = 120 bits (304), Expect = 4e-31
Identities = 49/204 (24%), Positives = 87/204 (42%), Gaps = 22/204 (10%)
Query: 181 VITGSTRGLGKALAREFLLSGDRVVVA-SRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
++TG+ RG+G+ +A E G +V+V + S+ES V ++ G
Sbjct: 33 LVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIK--------KNGS----- 79
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQI 299
A + +V D+ ++ AV FG +DI +N+G F + T EE +++
Sbjct: 80 ----DAACVKANVGVVEDIVRMFEEAVKIFGKLDIVCSNSGVVS-FGHVKDVTPEEFDRV 134
Query: 300 VSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQAS 359
+ N G REA + + GG + M + P AVY +K +
Sbjct: 135 FTINTRGQFFVAREAYKHLEI---GGRLILMGSITGQAKAVPKHAVYSGSKGAIETFARC 191
Query: 360 LFKESKRSKVGVHTASPGMVLTDL 383
+ + K+ V+ +PG + TD+
Sbjct: 192 MAIDMADKKITVNVVAPGGIKTDM 215
|
| >1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP} Length = 244 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 4e-31
Identities = 30/206 (14%), Positives = 58/206 (28%), Gaps = 27/206 (13%)
Query: 181 VITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNL 240
++T + G A G VV S + E + G
Sbjct: 5 LVTHARHFAGPAAVEALTQDGYTVVCHDASFA-------DAAERQRFESENPGT------ 51
Query: 241 VHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNK--GFKPLLQFTNEEIEQ 298
++L + + +ID ++N + PL + +I Q
Sbjct: 52 ----------IALAEQKPERLVDATLQHGEAIDTIVSNDYIPRPMNRLPLEGTSEADIRQ 101
Query: 299 IVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQA 358
+ + IL + A+ +R G + + + G +YG + L
Sbjct: 102 MFEALSIFPILLLQSAIAPLRAA-GGASVIFI-TSSVGKKPLAYNPLYGPARAATVALVE 159
Query: 359 SLFKESKRSKVGVHTASPGMVLTDLL 384
S K R + ++ P
Sbjct: 160 SAAKTLSRDGILLYAIGPNFFNNPTY 185
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* Length = 254 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 5e-31
Identities = 45/209 (21%), Positives = 82/209 (39%), Gaps = 27/209 (12%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+TG+ G+G + R F SG R+++ R + ++ EL
Sbjct: 12 ACAAVTGAGSGIGLEICRAFAASGARLILIDREAAALDRAAQELGA-------------- 57
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
A A I DV + + + + I +N+AG + L+ +
Sbjct: 58 -----AVAARIVADVTDAEAMTAAAA-EAEAVAPVSILVNSAGIARL-HDALETDDATWR 110
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFN---MDGAGSGGSSTPLTAVYGSTKCGLR 354
Q+++ N+ G +R R M + G I N M +G+ + + Y ++K +
Sbjct: 111 QVMAVNVDGMFWASRAFGRAMVAR-GAGAIVNLGSM--SGTIVNRPQFASSYMASKGAVH 167
Query: 355 QLQASLFKESKRSKVGVHTASPGMVLTDL 383
QL +L E V V+ +PG V T++
Sbjct: 168 QLTRALAAEWAGRGVRVNALAPGYVATEM 196
|
| >3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A* Length = 281 | Back alignment and structure |
|---|
Score = 120 bits (303), Expect = 6e-31
Identities = 50/209 (23%), Positives = 78/209 (37%), Gaps = 28/209 (13%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
+ITG GLG+AL F+ G RV V +S+E +R GG
Sbjct: 8 ALITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVAH-----------GG----- 51
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEI--- 296
G+ DV D ++ + + FG ID I NAG L ++I
Sbjct: 52 ----NAVGVVGDVRSLQDQKRAAERCLAAFGKIDTLIPNAGIWDYSTALADLPEDKIDAA 107
Query: 297 -EQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQ 355
+ I N+ G I + + + G + + +G +Y +TK +
Sbjct: 108 FDDIFHVNVKGYIHAVKACLPALVSS--RGSVVFT-ISNAGFYPNGGGPLYTATKHAVVG 164
Query: 356 LQASLFKESKRSKVGVHTASPGMVLTDLL 384
L + E V V+ +PG + TDL
Sbjct: 165 LVRQMAFELAP-HVRVNGVAPGGMNTDLR 192
|
| >2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A Length = 255 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 7e-31
Identities = 57/207 (27%), Positives = 88/207 (42%), Gaps = 24/207 (11%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ ++TGST G+G +A+ +G +V+ + + E+ G
Sbjct: 5 KTALVTGSTSGIGLGIAQVLARAGANIVLNGFGDPAP--ALAEIA--------RHGV--- 51
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
K D+ + A ++ L A EFG +DI +NNAG P+ QF E +
Sbjct: 52 ------KAVHHPADLSDVAQIEALFALAEREFGGVDILVNNAGIQHV-APVEQFPLESWD 104
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD-GAGSGGSSTPLTAVYGSTKCGLRQL 356
+I++ NL TR A+ MR + G I N+ G GS A Y + K G+ L
Sbjct: 105 KIIALNLSAVFHGTRLALPGMRAR-NWGRIINIASVHGLVGS--TGKAAYVAAKHGVVGL 161
Query: 357 QASLFKESKRSKVGVHTASPGMVLTDL 383
+ E+ S V + PG VLT L
Sbjct: 162 TKVVGLETATSNVTCNAICPGWVLTPL 188
|
| >3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} Length = 271 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 9e-31
Identities = 44/206 (21%), Positives = 82/206 (39%), Gaps = 23/206 (11%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
+ITG+ G+G +R +G RVV+A + + G
Sbjct: 14 AIITGACGGIGLETSRVLARAGARVVLADLPETDLAGAAASV-----------GR----- 57
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAG-TNKGFKPLLQFTNEEIEQ 298
D+ V+ L +F ++ FG +DI NNA ++ + Q T + +
Sbjct: 58 ----GAVHHVVDLTNEVSVRALIDFTIDTFGRLDIVDNNAAHSDPADMLVTQMTVDVWDD 113
Query: 299 IVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQA 358
+ N G++L + A+ + GG I N+ + + ++ ++ Y TK + L
Sbjct: 114 TFTVNARGTMLMCKYAIPRLISA-GGGAIVNI-SSATAHAAYDMSTAYACTKAAIETLTR 171
Query: 359 SLFKESKRSKVGVHTASPGMVLTDLL 384
+ + R V + +PG+V T L
Sbjct: 172 YVATQYGRHGVRCNAIAPGLVRTPRL 197
|
| >3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} PDB: 3gdf_A Length = 267 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 1e-30
Identities = 52/209 (24%), Positives = 78/209 (37%), Gaps = 21/209 (10%)
Query: 178 RNVVITGS--TRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGS 235
+ VV+TG+ +G+G AR G V + S EEN+KE G
Sbjct: 21 KVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRAQ------GAEENVKELEKTYGI- 73
Query: 236 SKKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEE 295
K C V +KL V +FG ID +I NAG +L + E
Sbjct: 74 --------KAKAYKCQVDSYESCEKLVKDVVADFGQIDAFIANAGATAD-SGILDGSVEA 124
Query: 296 IEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG-AGSGGSSTPLTAVYGSTKCGLR 354
+V +L G+ C + +++ G + +G + Y K G
Sbjct: 125 WNHVVQVDLNGTFHCAKAVGHHFKER-GTGSLVITASMSGHIANFPQEQTSYNVAKAGCI 183
Query: 355 QLQASLFKESKRSKVGVHTASPGMVLTDL 383
+ SL E R V++ SPG + T L
Sbjct: 184 HMARSLANEW-RDFARVNSISPGYIDTGL 211
|
| >2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* Length = 278 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 1e-30
Identities = 51/235 (21%), Positives = 97/235 (41%), Gaps = 20/235 (8%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
+ITG G+G+ A+ F+ G +VV+A + + + +
Sbjct: 19 AIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSP--------------- 63
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAG-TNKGFKPLLQFTNEEIEQ 298
++ + CDV + DV+ L + + + G +DI N G + +L+ NE+ ++
Sbjct: 64 ---DVISFVHCDVTKDEDVRNLVDTTIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKR 120
Query: 299 IVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQA 358
++ N+ G+ L + A RVM K G I S + ++ VY +TK + L
Sbjct: 121 VMDINVYGAFLVAKHAARVMIPA-KKGSIVFTASISSFTAGEGVSHVYTATKHAVLGLTT 179
Query: 359 SLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPR 413
SL E + V+ SP +V + LL + + ++ + + L
Sbjct: 180 SLCTELGEYGIRVNCVSPYIVASPLLTDVFGVDSSRVEELAHQAANLKGTLLRAE 234
|
| >2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* Length = 249 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 1e-30
Identities = 46/236 (19%), Positives = 86/236 (36%), Gaps = 28/236 (11%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ VITG G+G+A+A F + G + +A + G
Sbjct: 8 KLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPE--AEAAIR--------NLGR--- 54
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
+V + CDV +P DV+ ++ FG DI +NNAG P + T E+ +
Sbjct: 55 ------RVLTVKCDVSQPGDVEAFGKQVISTFGRCDILVNNAGIYP-LIPFDELTFEQWK 107
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQ 357
+ N+ L + + M+ G I N+ + + Y STK
Sbjct: 108 KTFEINVDSGFLMAKAFVPGMKRN-GWGRIINL-TSTTYWLKIEAYTHYISTKAANIGFT 165
Query: 358 ASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICE------LPETVA 407
+L + + + V+ +P +V T + + + + + +P +
Sbjct: 166 RALASDLGKDGITVNAIAPSLVRTATTEASALSAMFDVLPNMLQAIPRLQVPLDLT 221
|
| >3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus} Length = 266 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 2e-30
Identities = 49/209 (23%), Positives = 83/209 (39%), Gaps = 30/209 (14%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ VVITG++ G+G+A+AR F G +++ +R E L+ L
Sbjct: 17 KLVVITGASSGIGEAIARRFSEEGHPLLLLARRVE-------RLKA-LNLP--------- 59
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
DV + A +G D +NNAG + E +
Sbjct: 60 ------NTLCAQVDVTDKYTFDTAITRAEKIYGPADAIVNNAGMML-LGQIDTQEANEWQ 112
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGS--GGSSTPLTAVYGSTKCGLRQ 355
++ N++G + + + M+ + G I N+ S G + P A Y TK +
Sbjct: 113 RMFDVNVLGLLNGMQAVLAPMKAR-NCGTIINI---SSIAGKKTFPDHAAYCGTKFAVHA 168
Query: 356 LQASLFKESKRSKVGVHTASPGMVLTDLL 384
+ ++ +E S V V T +P V T+LL
Sbjct: 169 ISENVREEVAASNVRVMTIAPSAVKTELL 197
|
| >3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} Length = 260 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 2e-30
Identities = 37/220 (16%), Positives = 78/220 (35%), Gaps = 33/220 (15%)
Query: 166 NMVLEEHCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENL 225
N+ + H ++ITG+++ +G A L G RV+++ R+ + +VTEL +
Sbjct: 16 NLYFQGHMTLSSAPILITGASQRVGLHCALRLLEHGHRVIISYRTEHA---SVTELRQ-- 70
Query: 226 KEGMMAAGGSSKKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGF 285
A + D + + + S+ ++NA
Sbjct: 71 -----------------AGAVALYGDFSCETGIMAFIDLLKTQTSSLRAVVHNASEW--L 111
Query: 286 KPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNM-DGAGSGGSSTPLTA 344
+ ++ S +++ L ++ + I ++ D G +
Sbjct: 112 AETPGEEADNFTRMFSVHMLAPYLINLHCEPLLTAS-EVADIVHISDDVTRKG--SSKHI 168
Query: 345 VYGSTKCGLRQLQASLFKE-SKRSKV-GVHTASPGMVLTD 382
Y +TK GL L S + KV G+ +P +++
Sbjct: 169 AYCATKAGLESLTLSFAARFAPLVKVNGI---APALLMFQ 205
|
| >4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp} Length = 244 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 3e-30
Identities = 39/207 (18%), Positives = 77/207 (37%), Gaps = 33/207 (15%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
N ++TG ++G+GKA+ L + + V+ + +
Sbjct: 5 ANYLVTGGSKGIGKAVVELLLQNKNHTVINIDIQQ------------------SFSA--- 43
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
+ I D+ + D+ + + + S D NAG + E I+
Sbjct: 44 -----ENLKFIKADLTKQQDITNV--LDIIKNVSFDGIFLNAGILI-KGSIFDIDIESIK 95
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQ 357
+++ N+ SI + ++ G I G+ + P + Y +K + Q+
Sbjct: 96 KVLDLNVWSSIYFIKGLENNLK---VGASIVFN-GSDQCFIAKPNSFAYTLSKGAIAQMT 151
Query: 358 ASLFKESKRSKVGVHTASPGMVLTDLL 384
SL + + ++ V+T PG V TDL
Sbjct: 152 KSLALDLAKYQIRVNTVCPGTVDTDLY 178
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} Length = 277 | Back alignment and structure |
|---|
Score = 117 bits (296), Expect = 5e-30
Identities = 46/205 (22%), Positives = 87/205 (42%), Gaps = 23/205 (11%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
++TG G+G+A A F +G VVVA + ++ E+ G
Sbjct: 30 CIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANEI-----------GS----- 73
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQI 299
K G+ DV D + + ++G +D+ +NNAG ++ E ++I
Sbjct: 74 ----KAFGVRVDVSSAKDAESMVEKTTAKWGRVDVLVNNAGFG-TTGNVVTIPEETWDRI 128
Query: 300 VSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQAS 359
+S N+ G LC++ + VMR GG I N + + S+ Y ++K + L +
Sbjct: 129 MSVNVKGIFLCSKYVIPVMRRN-GGGSIINT-TSYTATSAIADRTAYVASKGAISSLTRA 186
Query: 360 LFKESKRSKVGVHTASPGMVLTDLL 384
+ + + + V+ +PG + +
Sbjct: 187 MAMDHAKEGIRVNAVAPGTIDSPYF 211
|
| >3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides} Length = 266 | Back alignment and structure |
|---|
Score = 116 bits (294), Expect = 7e-30
Identities = 47/237 (19%), Positives = 80/237 (33%), Gaps = 39/237 (16%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ ++TG+ G+G A+ +G RV VA R+ +
Sbjct: 29 KVALVTGAAGGIGGAVVTALRAAGARVAVADRAVAGI----------------------- 65
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
A + D+ E A L G +DI +NNAG + + T+ +
Sbjct: 66 -----AADLHLPGDLREAAYADGLPGAVAAGLGRLDIVVNNAGVIS-RGRITETTDADWS 119
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQ 357
+ N+ R A+ +M GG I N+ + G P A+Y TK L L
Sbjct: 120 LSLGVNVEAPFRICRAAIPLMAAA-GGGAIVNV-ASCWGLRPGPGHALYCLTKAALASLT 177
Query: 358 ASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPRI 414
+ + + ++ P V T +L + F P+ L +
Sbjct: 178 QCMGMDHAPQGIRINAVCPNEVNTPML--------RTGFAKRGFDPDRAVAELGRTV 226
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* Length = 247 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 8e-30
Identities = 51/235 (21%), Positives = 96/235 (40%), Gaps = 27/235 (11%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ ++TG+ +G+GKA+A G V+V+ ++E + + G
Sbjct: 7 KTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASI-----------GK--- 52
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
K IA D+ +P V+ L G IDI +NNA F +
Sbjct: 53 ------KARAIAADISDPGSVKALFAEIQALTGGIDILVNNASIVP-FVAWDDVDLDHWR 105
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQ 357
+I+ NL G+ + TR MR K G + ++ + + + TP A Y + K G+
Sbjct: 106 KIIDVNLTGTFIVTRAGTDQMRAAGKAGRVISI-ASNTFFAGTPNMAAYVAAKGGVIGFT 164
Query: 358 ASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICEL-----PETVA 407
+L E + + + +PG++ +D + + + ++ + PE +A
Sbjct: 165 RALATELGKYNITANAVTPGLIESDGVKASPHNEAFGFVEMLQAMKGKGQPEHIA 219
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A Length = 252 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 9e-30
Identities = 34/206 (16%), Positives = 80/206 (38%), Gaps = 17/206 (8%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
R +++TG++ G+G+ A + G V++ R+ E +R + + G
Sbjct: 13 RIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHIN--------EETGRQ- 63
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
+ + C + Q+L+ + +D ++NAG P+ + + +
Sbjct: 64 -----PQWFILDLLTCTSENCQQLAQRIAVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQ 118
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQ 357
++ N+ + + T+ + ++ G +F G G Y ++K +
Sbjct: 119 DVMQVNVNATFMLTQALLPLLLKSDAGSLVFTSSSVGRQGR--ANWGAYAASKFATEGMM 176
Query: 358 ASLFKESKRSKVGVHTASPGMVLTDL 383
L E + ++ V+ +PG T +
Sbjct: 177 QVLADEYQ-QRLRVNCINPGGTRTAM 201
|
| >2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A Length = 264 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 1e-29
Identities = 45/205 (21%), Positives = 81/205 (39%), Gaps = 32/205 (15%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
V++TG++ G+G+A+A F+ G +V+ S G
Sbjct: 11 VIVTGASMGIGRAIAERFVDEGSKVIDLSIHDP--------------------GE----- 45
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQI 299
AK I CDV P V+ + E+GSI + +NNAG + + + E +I
Sbjct: 46 ---AKYDHIECDVTNPDQVKASIDHIFKEYGSISVLVNNAGIE-SYGKIESMSMGEWRRI 101
Query: 300 VSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQAS 359
+ NL G ++ A+ M + I N+ + T + Y ++K + L S
Sbjct: 102 IDVNLFGYYYASKFAIPYMIRS-RDPSIVNI-SSVQASIITKNASAYVTSKHAVIGLTKS 159
Query: 360 LFKESKRSKVGVHTASPGMVLTDLL 384
+ + + + P + T L+
Sbjct: 160 IALDYAP-LLRCNAVCPATIDTPLV 183
|
| >2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2 Length = 256 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 1e-29
Identities = 46/207 (22%), Positives = 80/207 (38%), Gaps = 26/207 (12%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ V++TG RG+G+A+A+ F G V + E + A
Sbjct: 7 KGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKEV--------------AEAI--- 49
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
A D+ + + + A G +D+ +NNA L E
Sbjct: 50 ------GGAFFQVDLEDERERVRFVEEAAYALGRVDVLVNNAAIAA-PGSALTVRLPEWR 102
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQ 357
+++ NL + + A R MR GG I N+ + G + A Y ++K GL L
Sbjct: 103 RVLEVNLTAPMHLSALAAREMRKV-GGGAIVNV-ASVQGLFAEQENAAYNASKGGLVNLT 160
Query: 358 ASLFKESKRSKVGVHTASPGMVLTDLL 384
SL + ++ V+ +PG + T+ +
Sbjct: 161 RSLALDLAPLRIRVNAVAPGAIATEAV 187
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} Length = 280 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 3e-29
Identities = 49/209 (23%), Positives = 81/209 (38%), Gaps = 22/209 (10%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVV-ASRSSESVRMTVTELEENLKEGMMAAGGSS 236
++TG RG+G +AR SG + + +E V + EL G
Sbjct: 30 PVAIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELS--------GLGA-- 79
Query: 237 KKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAG-TNKGFKPLLQFTNEE 295
+V + D+ + + Q + V EFG ID +NNAG + L E
Sbjct: 80 -------RVIFLRADLADLSSHQATVDAVVAEFGRIDCLVNNAGIASIVRDDFLDLKPEN 132
Query: 296 IEQIVSTNLVGSILCTREAMRVMRDQP--KGGHIFNMDGAGSGGSSTPLTAVYGSTKCGL 353
+ IV NL G++ T+ ++ M I N+ + S ++P Y +K GL
Sbjct: 133 FDTIVGVNLRGTVFFTQAVLKAMLASDARASRSIINI-TSVSAVMTSPERLDYCMSKAGL 191
Query: 354 RQLQASLFKESKRSKVGVHTASPGMVLTD 382
L + + V PG++ +D
Sbjct: 192 AAFSQGLALRLAETGIAVFEVRPGIIRSD 220
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} Length = 262 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 6e-29
Identities = 62/229 (27%), Positives = 96/229 (41%), Gaps = 32/229 (13%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
R+VV+TG T+G+G+ +A F +G V VA RS+ + V +L++ G
Sbjct: 11 RSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQ-------LGSG--- 60
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
KV G+ DV + A L+ AV EFG ID+ NAG PL T E++
Sbjct: 61 ------KVIGVQTDVSDRAQCDALAGRAVEEFGGIDVVCANAGVFPD-APLATMTPEQLN 113
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSST--PLT-----AVYGSTK 350
I + N+ G+ + + + G + SS P+T + YG+TK
Sbjct: 114 GIFAVNVNGTFYAVQACLDALIAS-GSGRVVLT-------SSITGPITGYPGWSHYGATK 165
Query: 351 CGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNII 399
+ E K+ V+ PG ++T+ LL M I
Sbjct: 166 AAQLGFMRTAAIELAPHKITVNAIMPGNIMTEGLLENGEEYIASMARSI 214
|
| >3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} Length = 273 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 6e-29
Identities = 44/211 (20%), Positives = 82/211 (38%), Gaps = 32/211 (15%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
R V+TG+ G+G+A+A + +G V+ R ++ V+ E+ GG
Sbjct: 32 RTAVVTGAGSGIGRAIAHGYARAGAHVLAWGR-TDGVKEVADEIA--------DGGG--- 79
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
+ D+ + ++ + +D+ +NNAG P + +
Sbjct: 80 ------SAEAVVADLADLEGAANVAE-ELAATRRVDVLVNNAGIIAR-APAEEVSLGRWR 131
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGS-----GGSSTPLTAVYGSTKCG 352
++++ NL + + +R M G I + S GG A Y ++K
Sbjct: 132 EVLTVNLDAAWVLSRSFGTAMLAH-GSGRIVTI---ASMLSFQGG---RNVAAYAASKHA 184
Query: 353 LRQLQASLFKESKRSKVGVHTASPGMVLTDL 383
+ L +L E VGV+ +PG V+T
Sbjct: 185 VVGLTRALASEWAGRGVGVNALAPGYVVTAN 215
|
| >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 Length = 253 | Back alignment and structure |
|---|
Score = 113 bits (286), Expect = 7e-29
Identities = 34/211 (16%), Positives = 74/211 (35%), Gaps = 34/211 (16%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
++TG G+G + + L G +V + + + + EL G
Sbjct: 9 ALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAEL-----------GE----- 52
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQI 299
+ + DV AD + G++++ +NNAG + E+ ++
Sbjct: 53 ----RSMFVRHDVSSEADWTLVMAAVQRRLGTLNVLVNNAGIL-LPGDMETGRLEDFSRL 107
Query: 300 VSTNLVGSILCTREAMRVMRDQPKGGHIFNMD-GAGSGGSSTPLTAVYGSTKCGLRQLQA 358
+ N + ++ + M++ GG I NM + A Y ++K + L
Sbjct: 108 LKINTESVFIGCQQGIAAMKET--GGSIINMASVSSWLPI--EQYAGYSASKAAVSALTR 163
Query: 359 SLFKESKRSKVG-----VHTASPGMVLTDLL 384
+ ++ +H P + T ++
Sbjct: 164 AAALSCRKQGYAIRVNSIH---PDGIYTPMM 191
|
| >3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium} Length = 269 | Back alignment and structure |
|---|
Score = 113 bits (285), Expect = 1e-28
Identities = 45/205 (21%), Positives = 79/205 (38%), Gaps = 31/205 (15%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
++TG + G+G A+ + G +VV S +S
Sbjct: 17 AIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKSDVNVSDH------------------- 57
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQI 299
DV +V++ ++G IDI +NNAG + PL E +I
Sbjct: 58 --------FKIDVTNEEEVKEAVEKTTKKYGRIDILVNNAGIE-QYSPLHLTPTEIWRRI 108
Query: 300 VSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQAS 359
+ N+ GS L + + VM G I N+ + ++T A Y ++K L L S
Sbjct: 109 IDVNVNGSYLMAKYTIPVMLAI-GHGSIINI-ASVQSYAATKNAAAYVTSKHALLGLTRS 166
Query: 360 LFKESKRSKVGVHTASPGMVLTDLL 384
+ + K+ + PG ++T ++
Sbjct: 167 VAIDYAP-KIRCNAVCPGTIMTPMV 190
|
| >1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A* Length = 254 | Back alignment and structure |
|---|
Score = 112 bits (283), Expect = 2e-28
Identities = 32/207 (15%), Positives = 60/207 (28%), Gaps = 29/207 (14%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
++T G A +G V S + ELE
Sbjct: 2 STAIVTNVKHFGGMGSALRLSEAGHTVACHDESFK----QKDELEA-------------- 43
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
+ +L + +G +D+ ++N F+P+ ++ E+
Sbjct: 44 -----FAETYPQLKPMSEQEPAELIEAVTSAYGQVDVLVSNDIFAPEFQPIDKYAVEDYR 98
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGS--GGSSTPLTAVYGSTKCGLRQ 355
V + M+ + K GHI + S + Y S + G
Sbjct: 99 GAVEALQIRPFALVNAVASQMKKR-KSGHIIFI---TSATPFGPWKELSTYTSARAGACT 154
Query: 356 LQASLFKESKRSKVGVHTASPGMVLTD 382
L +L KE + V P + ++
Sbjct: 155 LANALSKELGEYNIPVFAIGPNYLHSE 181
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} Length = 279 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 2e-28
Identities = 59/210 (28%), Positives = 87/210 (41%), Gaps = 24/210 (11%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ +TG + G+G A+AR G V +R +++V V L AAG
Sbjct: 25 QTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLR--------AAGH--- 73
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
V G +CDV +V AV FG I I +N+AG N G +
Sbjct: 74 ------DVDGSSCDVTSTDEVHAAVAAAVERFGPIGILVNSAGRNGG-GETADLDDALWA 126
Query: 298 QIVSTNLVGSILCTREAMRV--MRDQPKGGHIFNMDG-AGSGGSSTPLTAVYGSTKCGLR 354
++ TNL G TRE +R MR+ G I N+ G G A Y ++K G+
Sbjct: 127 DVLDTNLTGVFRVTREVLRAGGMREA-GWGRIVNIASTGGKQGV--MYAAPYTASKHGVV 183
Query: 355 QLQASLFKESKRSKVGVHTASPGMVLTDLL 384
S+ E ++ + V+ PG V T +
Sbjct: 184 GFTKSVGFELAKTGITVNAVCPGYVETPMA 213
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 Length = 263 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 6e-28
Identities = 49/208 (23%), Positives = 80/208 (38%), Gaps = 32/208 (15%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ +++TG+ G+G+A F G +V R + V L
Sbjct: 7 KTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAAL-----------EA--- 52
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
+ + DV +P V+ + A+ EFG + + AG E E
Sbjct: 53 ------EAIAVVADVSDPKAVEAVFAEALEEFGRLHGVAHFAGVAH-SALSWNLPLEAWE 105
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD---GAGSGGSSTPLTAVYGSTKCGLR 354
+++ NL GS L R+A V+ +GG + G G+ G A Y + K G+
Sbjct: 106 KVLRVNLTGSFLVARKAGEVLE---EGGSLVLTGSVAGLGAFGL-----AHYAAGKLGVV 157
Query: 355 QLQASLFKESKRSKVGVHTASPGMVLTD 382
L +L E R V V+ PG++ T
Sbjct: 158 GLARTLALELARKGVRVNVLLPGLIQTP 185
|
| >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} Length = 276 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 1e-27
Identities = 50/212 (23%), Positives = 88/212 (41%), Gaps = 28/212 (13%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
R ++TG +RG+G+ +A+ L +G RV + +R +E+ T T L A G
Sbjct: 30 RIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTATRLS---------AYG--- 77
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
I D+ A ++L+ +DI +NNAGT+ G L + E
Sbjct: 78 ------DCQAIPADLSSEAGARRLAQALGELSARLDILVNNAGTSWG-AALESYPVSGWE 130
Query: 298 QIVSTNLVGSILCTREAMRVMRDQP---KGGHIFN---MDGAGSGGSSTPLTAVYGSTKC 351
+++ N+ C ++ + ++R + N + G + G YG +K
Sbjct: 131 KVMQLNVTSVFSCIQQLLPLLRRSASAENPARVINIGSVAGISAMGEQAY---AYGPSKA 187
Query: 352 GLRQLQASLFKESKRSKVGVHTASPGMVLTDL 383
L QL L KE + V+ +PG + +
Sbjct: 188 ALHQLSRMLAKELVGEHINVNVIAPGRFPSRM 219
|
| >3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str} Length = 255 | Back alignment and structure |
|---|
Score = 109 bits (276), Expect = 1e-27
Identities = 49/219 (22%), Positives = 87/219 (39%), Gaps = 29/219 (13%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVA-SRSSESVRMTVTELEENLKEGMMAAGGSS 236
+ ++TG++RG+G+A+A+ G V + E TV E++ + GG
Sbjct: 8 KVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQ--------SNGG-- 57
Query: 237 KKNLVHAKVAGIACDVCEPADVQKLSNFAVNEF------GSIDIWINNAGTNKGFKPLLQ 290
I ++ V+ L + NE DI INNAG + +
Sbjct: 58 -------SAFSIGANLESLHGVEALYSSLDNELQNRTGSTKFDILINNAGIGP-GAFIEE 109
Query: 291 FTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTK 350
T + +++VS N ++A+ +RD I N+ + + S P Y TK
Sbjct: 110 TTEQFFDRMVSVNAKAPFFIIQQALSRLRD---NSRIINI-SSAATRISLPDFIAYSMTK 165
Query: 351 CGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGST 389
+ + +L K+ + V+ PG V TD+ +
Sbjct: 166 GAINTMTFTLAKQLGARGITVNAILPGFVKTDMNAELLS 204
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* Length = 277 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 2e-27
Identities = 57/213 (26%), Positives = 91/213 (42%), Gaps = 34/213 (15%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
++TG+T G+G +AR G RV V +R E +R T+ EL AG
Sbjct: 23 EVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELR--------EAGV--- 71
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
+ G CDV +++ L V +G +D+ +NNAG G + +E
Sbjct: 72 ------EADGRTCDVRSVPEIEALVAAVVERYGPVDVLVNNAGRPGG-GATAELADELWL 124
Query: 298 QIVSTNLVGSILCTREAMRV--MRDQPKGGHIFNMDGAGSGGSST------PLTAVYGST 349
+V TNL G T++ ++ M ++ G I N+ +ST A Y ++
Sbjct: 125 DVVETNLTGVFRVTKQVLKAGGMLER-GTGRIVNI-------ASTGGKQGVVHAAPYSAS 176
Query: 350 KCGLRQLQASLFKESKRSKVGVHTASPGMVLTD 382
K G+ +L E R+ + V+ PG V T
Sbjct: 177 KHGVVGFTKALGLELARTGITVNAVCPGFVETP 209
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} Length = 293 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 4e-27
Identities = 54/229 (23%), Positives = 92/229 (40%), Gaps = 32/229 (13%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
R+V++TG T+G+G+ +A F +G V VA+RS + EL E G
Sbjct: 42 RSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGE-------LGAG--- 91
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
V G+ DV +P + V+ FG++D+ NAG L T E++
Sbjct: 92 ------NVIGVRLDVSDPGSCADAARTVVDAFGALDVVCANAGIFP-EARLDTMTPEQLS 144
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSST--PLT-----AVYGSTK 350
+++ N+ G++ + + + G + SS P+T + YG++K
Sbjct: 145 EVLDVNVKGTVYTVQACLAPLTAS-GRGRVILT-------SSITGPVTGYPGWSHYGASK 196
Query: 351 CGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNII 399
+ E V V+ PG +LT+ L+ M I
Sbjct: 197 AAQLGFMRTAAIELAPRGVTVNAILPGNILTEGLVDMGEEYISGMARSI 245
|
| >2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A Length = 239 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 5e-27
Identities = 48/207 (23%), Positives = 83/207 (40%), Gaps = 29/207 (14%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
R ++TG +RG+G+A+A + G RV +ASR+ E E ++L
Sbjct: 3 RKALVTGGSRGIGRAIAEALVARGYRVAIASRNPE-------EAAQSL------------ 43
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
+ D+ E D + L A+ G + + ++ A N KP L+ + EE
Sbjct: 44 ------GAVPLPTDL-EKDDPKGLVKRALEALGGLHVLVHAAAVNV-RKPALELSYEEWR 95
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG-AGSGGSSTPLTAVYGSTKCGLRQL 356
+++ +L + L + A M + G + + Y + K L L
Sbjct: 96 RVLYLHLDVAFLLAQAAAPHMAEA-GWGRVLFIGSVTTFTAGGPVPIPAYTTAKTALLGL 154
Query: 357 QASLFKESKRSKVGVHTASPGMVLTDL 383
+L KE R + V+ PG V T+
Sbjct: 155 TRALAKEWARLGIRVNLLCPGYVETEF 181
|
| >2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli} Length = 250 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 9e-27
Identities = 46/207 (22%), Positives = 83/207 (40%), Gaps = 30/207 (14%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+NV +TG+ +G+G A A F+ +G +V ++
Sbjct: 8 KNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFT------------------QEQY--- 46
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
A DV + A V ++ + E +D +N AG + Q + E+ +
Sbjct: 47 ------PFATEVMDVADAAQVAQVCQRLLAETERLDALVNAAGILR-MGATDQLSKEDWQ 99
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQ 357
Q + N+ G+ ++ M R Q +GG I + + + + + YG++K L+ L
Sbjct: 100 QTFAVNVGGAFNLFQQTMNQFRRQ-RGGAIVTV-ASDAAHTPRIGMSAYGASKAALKSLA 157
Query: 358 ASLFKESKRSKVGVHTASPGMVLTDLL 384
S+ E S V + SPG TD+
Sbjct: 158 LSVGLELAGSGVRCNVVSPGSTDTDMQ 184
|
| >1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A* Length = 276 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 1e-26
Identities = 45/234 (19%), Positives = 77/234 (32%), Gaps = 38/234 (16%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVA-SRSSESVRMTVTELEENLKEGMMAAGGSS 236
VITG R +G ++A G RVVV S + + V EL A G
Sbjct: 12 PAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNA-------ARAG-- 62
Query: 237 KKNLVHAKVAGIACDVCEPADV----QKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQF- 291
D+ + + + + + + FG D+ +NNA PLL
Sbjct: 63 -------SAVLCKGDLSLSSSLLDCCEDIIDCSFRAFGRCDVLVNNASAYY-PTPLLPGD 114
Query: 292 ----------TNEEIEQIVSTNLVGSILCTREAMRVMRDQP----KGGHIFNMDGAGSGG 337
+ ++ ++ +N V + R R + + + N+
Sbjct: 115 DTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNL-CDAMTD 173
Query: 338 SSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQ 391
P VY K L L + E + V+ +PG+ L + T +
Sbjct: 174 LPLPGFCVYTMAKHALGGLTRAAALELAPRHIRVNAVAPGLSLLPPAMPQETQE 227
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} Length = 277 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 7e-26
Identities = 45/248 (18%), Positives = 85/248 (34%), Gaps = 32/248 (12%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVA-------------SRSSESVRMTVTELEENLK 226
ITG+ RG G+A A G ++ S + + TV +E
Sbjct: 14 AFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVE---- 69
Query: 227 EGMMAAGGSSKKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFK 286
AA ++ D + ++K+ + V G +DI + NAG +
Sbjct: 70 ----AANR---------RIVAAVVDTRDFDRLRKVVDDGVAALGRLDIIVANAGVA-APQ 115
Query: 287 PLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVY 346
T E+ ++ N+ G+ + + +GG I + + +G P Y
Sbjct: 116 AWDDITPEDFRDVMDINVTGTWNTVMAGAPRIIEGGRGGSIILI-SSAAGMKMQPFMIHY 174
Query: 347 GSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETV 406
++K + L + E + + V++ PG V T + Q +L +
Sbjct: 175 TASKHAVTGLARAFAAELGKHSIRVNSVHPGPVNTPMGSGDMVTAVGQAMETNPQLSHVL 234
Query: 407 ARTLVPRI 414
L +
Sbjct: 235 TPFLPDWV 242
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} Length = 280 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 8e-26
Identities = 54/255 (21%), Positives = 95/255 (37%), Gaps = 41/255 (16%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVA-------------SRSSESVRMTVTELEENLK 226
ITG+ RG G++ A G ++ S E + T +E
Sbjct: 18 AFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVE---- 73
Query: 227 EGMMAAGGSSKKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFK 286
G K DV + A +++L + +FG +D+ + NAG +
Sbjct: 74 ----DQGR---------KALTRVLDVRDDAALRELVADGMEQFGRLDVVVANAGVLS-WG 119
Query: 287 PLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVY 346
+ + T+E+ + ++ NL G+ R + M + GG I + + +G +TP Y
Sbjct: 120 RVWELTDEQWDTVIGVNLTGTWRTLRATVPAMIEAGNGGSIVVV-SSSAGLKATPGNGHY 178
Query: 347 GSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETV 406
++K GL L +L E + V++ P V T + I+ + M I P V
Sbjct: 179 SASKHGLTALTNTLAIELGEYGIRVNSIHPYSVETPM------IEPEAMMEIFARHPSFV 232
Query: 407 ---ARTLVPRIRVVK 418
V +
Sbjct: 233 HSFPPMPVQPNGFMT 247
|
| >3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} Length = 264 | Back alignment and structure |
|---|
Score = 104 bits (263), Expect = 1e-25
Identities = 48/213 (22%), Positives = 82/213 (38%), Gaps = 31/213 (14%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
R+ +IT T+GLGK + + L G V V S E +KE
Sbjct: 8 RHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDT-------TAMETMKETYKDVEE--- 57
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAG---TNKGFKPLLQFTNE 294
++ + DV + D+ K+ A++ FG ID INNAG + L+ + +
Sbjct: 58 ------RLQFVQADVTKKEDLHKIVEEAMSHFGKIDFLINNAGPYVFERKK--LVDYEED 109
Query: 295 EIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLT-----AVYGST 349
E +++ NL + + VMR Q G I N + + + +
Sbjct: 110 EWNEMIQGNLTAVFHLLKLVVPVMRKQ-NFGRIINY----GFQGADSAPGWIYRSAFAAA 164
Query: 350 KCGLRQLQASLFKESKRSKVGVHTASPGMVLTD 382
K GL L ++ E + + PG ++ +
Sbjct: 165 KVGLVSLTKTVAYEEAEYGITANMVCPGDIIGE 197
|
| >2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2 Length = 246 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 1e-25
Identities = 41/207 (19%), Positives = 78/207 (37%), Gaps = 28/207 (13%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ +++T + +G+G+A A F G +V+ + ++ ELE+
Sbjct: 7 KVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQ----ELEKYP------------ 50
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
+ DV + + + NE +D+ N AG +L ++ +
Sbjct: 51 ------GIQTRVLDVTKKKQIDQ----FANEVERLDVLFNVAGFVH-HGTVLDCEEKDWD 99
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQ 357
++ N+ L + + M Q K G+I NM S VY +TK + L
Sbjct: 100 FSMNLNVRSMYLMIKAFLPKMLAQ-KSGNIINMSSVASSVKGVVNRCVYSTTKAAVIGLT 158
Query: 358 ASLFKESKRSKVGVHTASPGMVLTDLL 384
S+ + + + + PG V T L
Sbjct: 159 KSVAADFIQQGIRCNCVCPGTVDTPSL 185
|
| >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 Length = 245 | Back alignment and structure |
|---|
Score = 103 bits (260), Expect = 2e-25
Identities = 50/209 (23%), Positives = 82/209 (39%), Gaps = 34/209 (16%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ V+ITG+ G+G+A F G R+V +R +
Sbjct: 6 KAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAV---------------- 49
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAG-TNKGFKPLLQFTNEEI 296
+ DV +PA V++ A+ G +D ++ AG T F + E+
Sbjct: 50 ------GAHPVVMDVADPASVERGFAEALAHLGRLDGVVHYAGITRDNF--HWKMPLEDW 101
Query: 297 EQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD---GAGSGGSSTPLTAVYGSTKCGL 353
E ++ NL GS L + A MR++ G I G+ G A Y ++ G+
Sbjct: 102 ELVLRVNLTGSFLVAKAASEAMREK-NPGSIVLTASRVYLGNLGQ-----ANYAASMAGV 155
Query: 354 RQLQASLFKESKRSKVGVHTASPGMVLTD 382
L +L E R + V+T +PG + T
Sbjct: 156 VGLTRTLALELGRWGIRVNTLAPGFIETR 184
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} PDB: 3uwr_A* Length = 286 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 3e-25
Identities = 42/228 (18%), Positives = 83/228 (36%), Gaps = 34/228 (14%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVA----------------SRSSESVRMTVTELEE 223
+TG+ RG G++ A G ++ + + E + T ++
Sbjct: 14 AFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVK- 72
Query: 224 NLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNK 283
++ DV + ++ + V + G +DI + NAG
Sbjct: 73 -------GHNR---------RIVTAEVDVRDYDALKAAVDSGVEQLGRLDIIVANAGIGN 116
Query: 284 GFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLT 343
G L + + E+ +++ NL G + + M +GG I + G + P T
Sbjct: 117 GGDTLDKTSEEDWTEMIDINLAGVWKTVKAGVPHMIAGGRGGSIILT-SSVGGLKAYPHT 175
Query: 344 AVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQ 391
Y + K G+ L + E + + V++ P V T +L + T +
Sbjct: 176 GHYVAAKHGVVGLMRAFGVELGQHMIRVNSVHPTHVKTPMLHNEGTFK 223
|
| >1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A* Length = 241 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 6e-25
Identities = 33/208 (15%), Positives = 61/208 (29%), Gaps = 31/208 (14%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
R V++ G LG + F V E
Sbjct: 8 RRVLVYGGRGALGSRCVQAFRARNWWVASIDVVEN-------EEAS-------------- 46
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
+ + + E AD + +D + AG G + + +
Sbjct: 47 ----ASVIVKMTDSFTEQADQVTAEVGKLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCD 102
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQ 357
+ ++ S + + A + ++ +GG + GA + TP YG K + QL
Sbjct: 103 LMWKQSIWTSTISSHLATKHLK---EGGLLTLA-GAKAALDGTPGMIGYGMAKGAVHQLC 158
Query: 358 ASLFKESKRSKVG--VHTASPGMVLTDL 383
SL ++ G P + T +
Sbjct: 159 QSLAGKNSGMPSGAAAIAVLPVTLDTPM 186
|
| >2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} Length = 264 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 6e-25
Identities = 32/155 (20%), Positives = 59/155 (38%), Gaps = 14/155 (9%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
++TG+ G+G+A++ G V + + TV L + G
Sbjct: 8 ALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGGPGSKEGPPRG---- 63
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSI-DIWINNAG-TNKGFKPLLQFTNEE 295
A DV E + L F + ++ AG T F LL + ++
Sbjct: 64 ------NHAAFQADVSEARAARCLLEQVQACFSRPPSVVVSCAGITQDEF--LLHMSEDD 115
Query: 296 IEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNM 330
+++++ NL G+ L T+ A + + G I N+
Sbjct: 116 WDKVIAVNLKGTFLVTQAAAQALVSNGCRGSIINI 150
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} Length = 294 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 7e-25
Identities = 47/219 (21%), Positives = 82/219 (37%), Gaps = 35/219 (15%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESV--RMTVTELEENLKEGMMAAGGS 235
R ++TG G+G+A A + G V + +E + +E G
Sbjct: 50 RKALVTGGDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIE--------ECGR- 100
Query: 236 SKKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEE 295
K + D+ + + + L + A G +DI AG + T+E+
Sbjct: 101 --------KAVLLPGDLSDESFARSLVHKAREALGGLDILALVAGKQTAIPEIKDLTSEQ 152
Query: 296 IEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSS------TPLTAVYGST 349
+Q + N+ T+EA+ ++ PKG I SS +P Y +T
Sbjct: 153 FQQTFAVNVFALFWITQEAIPLL---PKGASIITT-------SSIQAYQPSPHLLDYAAT 202
Query: 350 KCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGS 388
K + L K+ + V+ +PG + T L +SG
Sbjct: 203 KAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTALQISGG 241
|
| >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 Length = 285 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 1e-24
Identities = 39/154 (25%), Positives = 73/154 (47%), Gaps = 21/154 (13%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ ++TG+ RG+G+ +A+ S V+ SR+ +S V E++ + G
Sbjct: 45 KVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIK--------SFGY--- 93
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAG-TNKGFKPLLQFTNEEI 296
+ +G A DV + ++ ++ N + E ++DI +NNAG T L+ N+E
Sbjct: 94 ------ESSGYAGDVSKKEEISEVINKILTEHKNVDILVNNAGITRDNL--FLRMKNDEW 145
Query: 297 EQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNM 330
E ++ TNL T+ + M + + G I N+
Sbjct: 146 EDVLRTNLNSLFYITQPISKRMINN-RYGRIINI 178
|
| >2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ... Length = 288 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 2e-24
Identities = 41/229 (17%), Positives = 77/229 (33%), Gaps = 38/229 (16%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSS-ESVRMTVTELEENLKEGMMAAGGSS 236
V+TG+ + +G+A+A + +G RVV+ +S E+ EL +
Sbjct: 24 PAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAVSLADELNK-------ERSN-- 74
Query: 237 KKNLVHAKVAGIACDVCE----PADVQKLSNFAVNEFGSIDIWINNAGTNKGF------- 285
D+ PA +++ N FG D+ +NNA
Sbjct: 75 -------TAVVCQADLTNSNVLPASCEEIINSCFRAFGRCDVLVNNASAFYPTPLVQGDH 127
Query: 286 --KPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQP-----KGGHIFNM-DGAGSGG 337
+ ++ +++ TN + L T + + I N+ D
Sbjct: 128 EDNSNGKTVETQVAELIGTNAIAPFLLTMSFAQRQKGTNPNCTSSNLSIVNLCDAMVDQP 187
Query: 338 SSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLS 386
++Y K L L S E + V+ +PG+ L + +
Sbjct: 188 --CMAFSLYNMGKHALVGLTQSAALELAPYGIRVNGVAPGVSLLPVAMG 234
|
| >3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua} Length = 202 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 2e-24
Identities = 34/206 (16%), Positives = 62/206 (30%), Gaps = 45/206 (21%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+++ G++ LG A+ L V+ A R S V
Sbjct: 4 MKILLIGASGTLGSAVKER-LEKKAEVITAGRHSGDVT---------------------- 40
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
D+ ++K+ + G +D ++ G+ F PL + T E+
Sbjct: 41 ------------VDITNIDSIKKM----YEQVGKVDAIVSATGSAT-FSPLTELTPEKNA 83
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQ 357
+S+ L G I + + D G G A +
Sbjct: 84 VTISSKLGGQINLVLLGIDSLND---KGSFTLTTGI-MMEDPIVQGASAAMANGAVTAFA 139
Query: 358 ASLFKESKRSKVGVHTASPGMVLTDL 383
S E R + ++T SP ++
Sbjct: 140 KSAAIEMPR-GIRINTVSPNVLEESW 164
|
| >1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 236 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 2e-24
Identities = 32/210 (15%), Positives = 61/210 (29%), Gaps = 35/210 (16%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
V++ G LG A+ F +G V+ S+
Sbjct: 4 GKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAND------------------------ 39
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNE--FGSIDIWINNAGTNKGFKPLLQFTNEE 295
+ + Q + + +D AG G + +
Sbjct: 40 ---QADSNILVDGNKNWTEQEQSILEQTASSLQGSQVDGVFCVAGGWAGGSASSKDFVKN 96
Query: 296 IEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQ 355
+ ++ ++ S + + A ++ GG + GA + TP YG K +
Sbjct: 97 ADLMIKQSVWSSAIAAKLATTHLK---PGGLLQLT-GAAAAMGPTPSMIGYGMAKAAVHH 152
Query: 356 LQASLFKESKRSKVG--VHTASPGMVLTDL 383
L +SL + V T P + T +
Sbjct: 153 LTSSLAAKDSGLPDNSAVLTIMPVTLDTPM 182
|
| >1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 250 | Back alignment and structure |
|---|
Score = 99.7 bits (249), Expect = 6e-24
Identities = 45/272 (16%), Positives = 89/272 (32%), Gaps = 53/272 (19%)
Query: 177 PRNVVITGSTRGLGKALAREFLLSGDRVVV--ASRSSESVRMTVTELEENLKEGMMAAGG 234
P +VV+TG+ RG+G L ++ + + + +R E TEL+
Sbjct: 3 PGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEK----ATELKS----------- 47
Query: 235 SSKKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFG--SIDIWINNAGTNKGFKPLLQFT 292
+ ++V + V + + G + + INNAG + +
Sbjct: 48 -----IKDSRVHVLPLTVTCDKSLDTFVSKVGEIVGSDGLSLLINNAGVLLSYGTNTEPN 102
Query: 293 NEEIEQIVSTNLVGSILCTREAMRVMR----------DQPKGGHIFNMD-GAGS-----G 336
I + + N +L T++ + +++ + + G GS
Sbjct: 103 RAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSITDNTS 162
Query: 337 GSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMF 396
GS+ Y +K + +L + K V V PG V T+L + +
Sbjct: 163 GSAQFPVLAYRMSKAAINMFGRTLAVDLKDDNVLVVNFCPGWVQTNLGGKNAALT----- 217
Query: 397 NIICELPETVARTLVPRIRVVKG--SGKAINY 426
E L+ + +G+
Sbjct: 218 ------VEQSTAELISSFNKLDNSHNGRFFMR 243
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} Length = 299 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 7e-24
Identities = 45/224 (20%), Positives = 82/224 (36%), Gaps = 30/224 (13%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVA------------SRSSESVRMTVTELEENLKE 227
ITG+ RG G++ A G ++ + + + TV ++E
Sbjct: 31 AFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVE----- 85
Query: 228 GMMAAGGSSKKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKP 287
A G ++ DV + +Q + V + G +DI + NA
Sbjct: 86 ---ALGR---------RIIASQVDVRDFDAMQAAVDDGVTQLGRLDIVLANAALASEGTR 133
Query: 288 LLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYG 347
L + + ++ NL G+ + R A+ + +GG I + G Y
Sbjct: 134 LNRMDPKTWRDMIDVNLNGAWITARVAIPHIMAGKRGGSIVFT-SSIGGLRGAENIGNYI 192
Query: 348 STKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQ 391
++K GL L ++ E + V+ P V T +LL+ T +
Sbjct: 193 ASKHGLHGLMRTMALELGPRNIRVNIVCPSSVATPMLLNEPTYR 236
|
| >2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum} Length = 247 | Back alignment and structure |
|---|
Score = 99.5 bits (249), Expect = 7e-24
Identities = 46/154 (29%), Positives = 75/154 (48%), Gaps = 20/154 (12%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ ++TGS+RGLGKA+A + G +V+ + + E AAG
Sbjct: 6 KTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPAS-------TSLDATAEEFKAAGI--- 55
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAG-TNKGFKPLLQFTNEEI 296
V DV P DV+ + A++ FG IDI +NNAG T +L+ + ++
Sbjct: 56 ------NVVVAKGDVKNPEDVENMVKTAMDAFGRIDILVNNAGITRDTL--MLKMSEKDW 107
Query: 297 EQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNM 330
+ +++TNL + LCT+ ++M Q K G I N+
Sbjct: 108 DDVLNTNLKSAYLCTKAVSKIMLKQ-KSGKIINI 140
|
| >1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G Length = 244 | Back alignment and structure |
|---|
Score = 99.1 bits (248), Expect = 8e-24
Identities = 44/152 (28%), Positives = 82/152 (53%), Gaps = 20/152 (13%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVA-SRSSESVRMTVTELEENLKEGMMAAGGSSKK 238
VV+TG++RG+GKA+A +G +V+V +RS+++ ++E A GG
Sbjct: 4 VVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIE--------AYGG---- 51
Query: 239 NLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQ 298
+ DV + ADV+ + A++ +G+ID+ +NNAG + L++ + ++
Sbjct: 52 -----QAITFGGDVSKEADVEAMMKTAIDAWGTIDVVVNNAGITRD-TLLIRMKKSQWDE 105
Query: 299 IVSTNLVGSILCTREAMRVMRDQPKGGHIFNM 330
++ NL G LCT+ A ++M + + G I N+
Sbjct: 106 VIDLNLTGVFLCTQAATKIMMKK-RKGRIINI 136
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} Length = 270 | Back alignment and structure |
|---|
Score = 99 bits (250), Expect = 8e-24
Identities = 35/154 (22%), Positives = 67/154 (43%), Gaps = 21/154 (13%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ ++TG++RG+G+A+A E G V+ + + + AG
Sbjct: 29 QVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFK--------QAGL--- 77
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAG-TNKGFKPLLQFTNEEI 296
+ G +V + V L + EFG++++ +NNAG T ++ ++E
Sbjct: 78 ------EGRGAVLNVNDATAVDALVESTLKEFGALNVLVNNAGITQDQL--AMRMKDDEW 129
Query: 297 EQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNM 330
+ ++ TNL +R +R M +GG I N+
Sbjct: 130 DAVIDTNLKAVFRLSRAVLRPMMKA-RGGRIVNI 162
|
| >4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A* Length = 269 | Back alignment and structure |
|---|
Score = 99.6 bits (249), Expect = 9e-24
Identities = 42/153 (27%), Positives = 77/153 (50%), Gaps = 18/153 (11%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
R ++TG++RG+G+A+A E +G +V V SS + + + AAGG
Sbjct: 29 RIALVTGASRGIGRAIALELAAAGAKVAVNYASSA-------GAADEVVAAIAAAGG--- 78
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
+ + DV + ++V+ L + +G +D+ +NNAG + LL+ ++ +
Sbjct: 79 ------EAFAVKADVSQESEVEALFAAVIERWGRLDVLVNNAGITRD-TLLLRMKRDDWQ 131
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNM 330
++ NL G LC+R A ++M Q + G I N+
Sbjct: 132 SVLDLNLGGVFLCSRAAAKIMLKQ-RSGRIINI 163
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* Length = 248 | Back alignment and structure |
|---|
Score = 98.7 bits (247), Expect = 1e-23
Identities = 40/154 (25%), Positives = 69/154 (44%), Gaps = 20/154 (12%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ ++TGSTRG+G+A+A + +G V++ S E + +E G
Sbjct: 8 KVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGE-------RAKAVAEEIANKYGV--- 57
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAG-TNKGFKPLLQFTNEEI 296
K G+ ++ + K N IDI +NNAG T L+ + +
Sbjct: 58 ------KAHGVEMNLLSEESINKAFEEIYNLVDGIDILVNNAGITRDKL--FLRMSLLDW 109
Query: 297 EQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNM 330
E+++ NL G+ L T+ ++R M Q + G I N+
Sbjct: 110 EEVLKVNLTGTFLVTQNSLRKMIKQ-RWGRIVNI 142
|
| >1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 Length = 267 | Back alignment and structure |
|---|
Score = 98.6 bits (246), Expect = 3e-23
Identities = 52/268 (19%), Positives = 89/268 (33%), Gaps = 48/268 (17%)
Query: 178 RNVVITGSTRGLGKALAREFLL---SGDRVVVASRSSESVRMTVTELEENLKEGMMAAGG 234
+++ITG RGLG L + L + R+ E ELE+ K
Sbjct: 22 NSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQA----KELEDLAKN------- 70
Query: 235 SSKKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFG--SIDIWINNAGTNKGFKPLLQFT 292
H+ + + D+ KL +++ NNAG +
Sbjct: 71 -------HSNIHILEIDLRNFDAYDKLVADIEGVTKDQGLNVLFNNAGIAPKSARITAVR 123
Query: 293 NEEIEQIVSTNLVGSILCTR----------EAMRVMRDQPKGGHIFNMD-GAGS-GGSST 340
++E+ + TN V I+ + +A I NM GS G++
Sbjct: 124 SQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSILGSIQGNTD 183
Query: 341 PLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIIC 400
Y ++K L SL + ++ + PG V TD+ S + +
Sbjct: 184 GGMYAYRTSKSALNAATKSLSVDLYPQRIMCVSLHPGWVKTDMGGSSAPLD--------- 234
Query: 401 ELPETVARTLVPRIRVVKG--SGKAINY 426
T +V I + +G +NY
Sbjct: 235 --VPTSTGQIVQTISKLGEKQNGGFVNY 260
|
| >2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis} Length = 246 | Back alignment and structure |
|---|
Score = 97.5 bits (244), Expect = 3e-23
Identities = 43/154 (27%), Positives = 71/154 (46%), Gaps = 20/154 (12%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ ++TG++RG+G+A+A + G VVV +E + + + + G
Sbjct: 5 KVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNE-------QKANEVVDEIKKLGS--- 54
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAG-TNKGFKPLLQFTNEEI 296
+ DV DV + V+ FG +DI +NNAG T L++ EE
Sbjct: 55 ------DAIAVRADVANAEDVTNMVKQTVDVFGQVDILVNNAGVTKDNL--LMRMKEEEW 106
Query: 297 EQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNM 330
+ +++TNL G LCT+ R M Q + G I N+
Sbjct: 107 DTVINTNLKGVFLCTKAVSRFMMRQ-RHGRIVNI 139
|
| >1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A* Length = 291 | Back alignment and structure |
|---|
Score = 98.6 bits (246), Expect = 4e-23
Identities = 37/236 (15%), Positives = 70/236 (29%), Gaps = 25/236 (10%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVV-ASRSSESVRMTVTELEENLKEGMMAAGGS- 235
++TG+ + LG+++A G V + RS+ L +
Sbjct: 10 PVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADL 69
Query: 236 SKKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEE 295
S A + V +L +G D+ +NNA + PLL+ +
Sbjct: 70 SNVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFY-PTPLLRNDEDG 128
Query: 296 --------------IEQIVSTNLVGSILCTREAMRVMRDQP-----KGGHIFNM-DGAGS 335
+ +N + + + P I NM D +
Sbjct: 129 HEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGTPAKHRGTNYSIINMVDAMTN 188
Query: 336 GGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQ 391
+Y K L L S E ++ V+ PG+ + + + +
Sbjct: 189 QP--LLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLSVLVDDMPPAVWE 242
|
| >3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} Length = 256 | Back alignment and structure |
|---|
Score = 97.6 bits (244), Expect = 4e-23
Identities = 48/208 (23%), Positives = 77/208 (37%), Gaps = 25/208 (12%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
R +TG G+G ++ + G RVV + E A G
Sbjct: 14 RIAYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNS-------PRRVKWLEDQKALGF--- 63
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAG-TNKGFKPLLQFTNEEI 296
+V + ++ + E G ID+ +NNAG T + T E+
Sbjct: 64 ------DFYASEGNVGDWDSTKQAFDKVKAEVGEIDVLVNNAGITRDVV--FRKMTREDW 115
Query: 297 EQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGS--GGSSTPLTAVYGSTKCGLR 354
+ ++ TNL T++ + M ++ G I N+ S G Y + K G+
Sbjct: 116 QAVIDTNLTSLFNVTKQVIDGMVER-GWGRIINI---SSVNGQKGQFGQTNYSTAKAGIH 171
Query: 355 QLQASLFKESKRSKVGVHTASPGMVLTD 382
SL +E V V+T SPG + TD
Sbjct: 172 GFTMSLAQEVATKGVTVNTVSPGYIGTD 199
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} Length = 247 | Back alignment and structure |
|---|
Score = 97.2 bits (243), Expect = 4e-23
Identities = 33/154 (21%), Positives = 66/154 (42%), Gaps = 21/154 (13%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ ++TG++RG+G +A G VV + S S ++ G
Sbjct: 6 KVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMK--------EKGF--- 54
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAG-TNKGFKPLLQFTNEEI 296
K G+ ++ + +Q E +IDI +NNAG T +++ + +E
Sbjct: 55 ------KARGLVLNISDIESIQNFFAEIKAENLAIDILVNNAGITRDNL--MMRMSEDEW 106
Query: 297 EQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNM 330
+ +++TNL ++E +R M + + G I ++
Sbjct: 107 QSVINTNLSSIFRMSKECVRGMMKK-RWGRIISI 139
|
| >3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} PDB: 3sj7_A* Length = 246 | Back alignment and structure |
|---|
Score = 96.8 bits (242), Expect = 5e-23
Identities = 41/154 (26%), Positives = 75/154 (48%), Gaps = 20/154 (12%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
++ ++TG++RG+G+++A + G V V S+ E E + E + A G
Sbjct: 5 KSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSK-------EKAEAVVEEIKAKGV--- 54
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAG-TNKGFKPLLQFTNEEI 296
I +V + +V+ + V++FGS+D+ +NNAG T L++ +E
Sbjct: 55 ------DSFAIQANVADADEVKAMIKEVVSQFGSLDVLVNNAGITRDNL--LMRMKEQEW 106
Query: 297 EQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNM 330
+ ++ TNL G C ++A M Q + G I N+
Sbjct: 107 DDVIDTNLKGVFNCIQKATPQMLRQ-RSGAIINL 139
|
| >2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8} Length = 245 | Back alignment and structure |
|---|
Score = 96.4 bits (241), Expect = 7e-23
Identities = 39/154 (25%), Positives = 66/154 (42%), Gaps = 19/154 (12%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
R +ITG++RG+G+A+A G + + + E E + E G
Sbjct: 2 RKALITGASRGIGRAIALRLAEDGFALAIHYGQNR-------EKAEEVAEEARRRGSPL- 53
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAG-TNKGFKPLLQFTNEEI 296
VA + ++ E L + A G +D +NNAG T L++ +E+
Sbjct: 54 -------VAVLGANLLEAEAATALVHQAAEVLGGLDTLVNNAGITRDTL--LVRMKDEDW 104
Query: 297 EQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNM 330
E ++ NL TREA+++M + G I N+
Sbjct: 105 EAVLEANLSAVFRTTREAVKLMMKA-RFGRIVNI 137
|
| >2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2 Length = 328 | Back alignment and structure |
|---|
Score = 98.3 bits (245), Expect = 8e-23
Identities = 37/226 (16%), Positives = 67/226 (29%), Gaps = 25/226 (11%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVV-ASRSSESVRMTVTELEENLKEGMMAAGGS- 235
++TG+ + LG+++A G V + RS+ L +
Sbjct: 47 PVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADL 106
Query: 236 SKKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEE 295
S A + V +L +G D+ +NNA + PLL+ +
Sbjct: 107 SNVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFY-PTPLLRNDEDG 165
Query: 296 --------------IEQIVSTNLVGSILCTREAMRVMRDQP-----KGGHIFNM-DGAGS 335
+ +N + + + P I NM D +
Sbjct: 166 HEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGTPAKHRGTNYSIINMVDAMTN 225
Query: 336 GGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLT 381
+Y K L L S E ++ V+ PG+ +
Sbjct: 226 QP--LLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLSVL 269
|
| >1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2 Length = 249 | Back alignment and structure |
|---|
Score = 96.1 bits (240), Expect = 1e-22
Identities = 40/207 (19%), Positives = 79/207 (38%), Gaps = 39/207 (18%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ V++ ++RG+G+A+A G V + +R+ EE LK
Sbjct: 20 KGVLVLAASRGIGRAVADVLSQEGAEVTICARN-----------EELLKR---------- 58
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
+ + CD+ + D+ + +DI + NAG K + TNE+ +
Sbjct: 59 -----SGHRYVVCDLRKDLDL------LFEKVKEVDILVLNAGGPKA-GFFDELTNEDFK 106
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLT--AVYGSTKCGLRQ 355
+ + + + I R + M+++ G I + S +P+ S + L
Sbjct: 107 EAIDSLFLNMIKIVRNYLPAMKEK-GWGRIVAI---TSFSVISPIENLYTSNSARMALTG 162
Query: 356 LQASLFKESKRSKVGVHTASPGMVLTD 382
+L E + V+ +PG T+
Sbjct: 163 FLKTLSFEVAPYGITVNCVAPGWTETE 189
|
| >3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} Length = 269 | Back alignment and structure |
|---|
Score = 96.5 bits (241), Expect = 1e-22
Identities = 49/208 (23%), Positives = 84/208 (40%), Gaps = 25/208 (12%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
R +TG GLG A++R +G V V+ + AG
Sbjct: 26 RVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSERN-------DHVSTWLMHERDAGR--- 75
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAG-TNKGFKPLLQFTNEEI 296
A DV + ++ + + +FG +D+ INNAG T ++ T +
Sbjct: 76 ------DFKAYAVDVADFESCERCAEKVLADFGKVDVLINNAGITRDAT--FMKMTKGDW 127
Query: 297 EQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGS--GGSSTPLTAVYGSTKCGLR 354
+ ++ T+L T++ + M ++ + G I N+ GS G A Y S K G+
Sbjct: 128 DAVMRTDLDAMFNVTKQFIAGMVER-RFGRIVNI---GSVNGSRGAFGQANYASAKAGIH 183
Query: 355 QLQASLFKESKRSKVGVHTASPGMVLTD 382
+L E+ + + V+T SPG + T
Sbjct: 184 GFTKTLALETAKRGITVNTVSPGYLATA 211
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} PDB: 3rsh_A* 3rro_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E Length = 248 | Back alignment and structure |
|---|
Score = 95.6 bits (239), Expect = 2e-22
Identities = 38/154 (24%), Positives = 67/154 (43%), Gaps = 24/154 (15%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ ++TG++RG+GKA+A G +V+ + S + L +
Sbjct: 10 KVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLGD-------------- 55
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAG-TNKGFKPLLQFTNEEI 296
G+A +V P ++ + +EFG +DI +NNAG T L++ EE
Sbjct: 56 ------NGKGMALNVTNPESIEAVLKAITDEFGGVDILVNNAGITRDNL--LMRMKEEEW 107
Query: 297 EQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNM 330
I+ TNL ++ +R M + + G I N+
Sbjct: 108 SDIMETNLTSIFRLSKAVLRGMMKK-RQGRIINV 140
|
| >1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A Length = 247 | Back alignment and structure |
|---|
Score = 95.3 bits (238), Expect = 2e-22
Identities = 49/208 (23%), Positives = 90/208 (43%), Gaps = 37/208 (17%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
R+V++TG RG+G A+A+ G +V V R S +
Sbjct: 16 RSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAP----------------------- 52
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAG-TNKGFKPLLQFTNEEI 296
+ G+ DV + V + G +++ ++NAG + F L++ T E+
Sbjct: 53 -----KGLFGVEVDVTDSDAVDRAFTAVEEHQGPVEVLVSNAGLSADAF--LMRMTEEKF 105
Query: 297 EQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGS--GGSSTPLTAVYGSTKCGLR 354
E++++ NL G+ + A R M+ K G + + GS G A Y ++K G+
Sbjct: 106 EKVINANLTGAFRVAQRASRSMQRN-KFGRMIFI---GSVSGLWGIGNQANYAASKAGVI 161
Query: 355 QLQASLFKESKRSKVGVHTASPGMVLTD 382
+ S+ +E ++ V + +PG + TD
Sbjct: 162 GMARSIARELSKANVTANVVAPGYIDTD 189
|
| >2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor} Length = 253 | Back alignment and structure |
|---|
Score = 95.3 bits (238), Expect = 2e-22
Identities = 54/209 (25%), Positives = 87/209 (41%), Gaps = 39/209 (18%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
R+V++TG RG+G A+AR F +GD+V + RS E
Sbjct: 22 RSVLVTGGNRGIGLAIARAFADAGDKVAITYRSGEPP----------------------- 58
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAG-TNKGFKPLLQFTNEEI 296
+ CD+ + V++ G +++ I NAG T L++ + E+
Sbjct: 59 -----EGFLAVKCDITDTEQVEQAYKEIEETHGPVEVLIANAGVTKDQL--LMRMSEEDF 111
Query: 297 EQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGS--GGSSTPLTAVYGSTKCGLR 354
+V TNL G+ + A R M K G + + S G + A Y ++K GL
Sbjct: 112 TSVVETNLTGTFRVVKRANRAMLRA-KKGRVVLI---SSVVGLLGSAGQANYAASKAGLV 167
Query: 355 QLQASLFKE-SKRSKVGVHTASPGMVLTD 382
SL +E R+ + + +PG V TD
Sbjct: 168 GFARSLARELGSRN-ITFNVVAPGFVDTD 195
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} Length = 278 | Back alignment and structure |
|---|
Score = 95.3 bits (238), Expect = 3e-22
Identities = 43/220 (19%), Positives = 76/220 (34%), Gaps = 37/220 (16%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVA------------SRSSESVRMTVTELEENLKE 227
ITG+ RG G+A A G ++ + E + TV +E
Sbjct: 16 AFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVE----- 70
Query: 228 GMMAAGGSSKKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKP 287
G ++ DV + + ++E G +DI + NAG
Sbjct: 71 ---DIGS---------RIVARQADVRDRESLSAALQAGLDELGRLDIVVANAGIAP---- 114
Query: 288 LLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNM---DGAGSGGSSTPLTA 344
+ ++ ++ NL G + A+ + Q GG I + G GS+ P +
Sbjct: 115 -MSAGDDGWHDVIDVNLTGVYHTIKVAIPTLVKQGTGGSIVLISSSAGLAGVGSADPGSV 173
Query: 345 VYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLL 384
Y + K G+ L + V++ P V T ++
Sbjct: 174 GYVAAKHGVVGLMRVYANLLAGQMIRVNSIHPSGVETPMI 213
|
| >1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ... Length = 327 | Back alignment and structure |
|---|
Score = 96.3 bits (240), Expect = 4e-22
Identities = 45/213 (21%), Positives = 73/213 (34%), Gaps = 28/213 (13%)
Query: 176 GPRNVVITGSTRGLGKALAREFL---LSGDRVVVASRSSESVRMTVTELEENLKEGMMAA 232
V+ITG + G+G LA +V R + T L E +
Sbjct: 1 ARTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLK----TQGRLWEAARALACPP 56
Query: 233 GGSSKKNLVHAKVAGIACDVCEPADVQKLSNFAVNE--FGSIDIWINNAGTNKG-FKPLL 289
G + + DV + V A G +D+ + NAG G PL
Sbjct: 57 GS----------LETLQLDVRDSKSVAA----ARERVTEGRVDVLVCNAGL--GLLGPLE 100
Query: 290 QFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGST 349
+ + ++ N+VG++ + + M+ + G + G+ G P VY ++
Sbjct: 101 ALGEDAVASVLDVNVVGTVRMLQAFLPDMKRR-GSGRVLVT-GSVGGLMGLPFNDVYCAS 158
Query: 350 KCGLRQLQASLFKESKRSKVGVHTASPGMVLTD 382
K L L SL V + G V T
Sbjct: 159 KFALEGLCESLAVLLLPFGVHLSLIECGPVHTA 191
|
| >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* Length = 265 | Back alignment and structure |
|---|
Score = 94.2 bits (235), Expect = 8e-22
Identities = 53/244 (21%), Positives = 81/244 (33%), Gaps = 51/244 (20%)
Query: 160 GTMVGANMVLEEHCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVT 219
G M A ++ VITG GLG A A + G V+ +
Sbjct: 1 GHMAAACRSVKG------LVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAK 54
Query: 220 ELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNA 279
+L G DV DVQ A +FG +D+ +N A
Sbjct: 55 KL-----------GN---------NCVFAPADVTSEKDVQTALALAKGKFGRVDVAVNCA 94
Query: 280 GTNKGFKPLLQ-----FTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKG-----GHIFN 329
G K T E+ ++++ NL+G+ R M G I N
Sbjct: 95 GIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIIN 154
Query: 330 M------DG-AGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTD 382
+G G A Y ++K G+ + + ++ + V T +PG+ T
Sbjct: 155 TASVAAFEGQVGQ--------AAYSASKGGIVGMTLPIARDLAPIGIRVMTIAPGLFGTP 206
Query: 383 LLLS 386
LL S
Sbjct: 207 LLTS 210
|
| >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A Length = 266 | Back alignment and structure |
|---|
Score = 93.8 bits (234), Expect = 1e-21
Identities = 36/154 (23%), Positives = 70/154 (45%), Gaps = 24/154 (15%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
R ++TG+T G+G+A+AR F G V + + ++ +L G
Sbjct: 28 RKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADL-----------GK--- 73
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAG-TNKGFKPLLQFTNEEI 296
V + ++ + +++L+ A E IDI +NNAG T G ++ +++
Sbjct: 74 ------DVFVFSANLSDRKSIKQLAEVAEREMEGIDILVNNAGITRDGL--FVRMQDQDW 125
Query: 297 EQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNM 330
+ +++ NL + TRE + M + + G I N+
Sbjct: 126 DDVLAVNLTAASTLTRELIHSMMRR-RYGRIINI 158
|
| >3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} Length = 281 | Back alignment and structure |
|---|
Score = 93.5 bits (233), Expect = 2e-21
Identities = 33/218 (15%), Positives = 66/218 (30%), Gaps = 38/218 (17%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
+++G GLG+A R G VV+A ++E + EL G
Sbjct: 33 AIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGKALADEL-----------GN----- 76
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPL----LQFTNEE 295
+ ++ +V V A + + G + +
Sbjct: 77 ----RAEFVSTNVTSEDSVLAAIEAANQLGRLRYAVVAHGGFGVAQRIVQRDGSPADMGG 132
Query: 296 IEQIVSTNLVGSILCTREAMRVMRDQPK-----GGHIFNMDG----AGSGGSSTPLTAVY 346
+ + L G+ R + G + G G Y
Sbjct: 133 FTKTIDLYLNGTYNVARLVAASIAAAEPRENGERGALVLTASIAGYEGQIGQ-----TAY 187
Query: 347 GSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLL 384
+ K G+ L + ++ + + V+T +PG + T ++
Sbjct: 188 AAAKAGVIGLTIAAARDLSSAGIRVNTIAPGTMKTPIM 225
|
| >3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} Length = 317 | Back alignment and structure |
|---|
Score = 94.2 bits (235), Expect = 2e-21
Identities = 56/230 (24%), Positives = 102/230 (44%), Gaps = 43/230 (18%)
Query: 180 VVITGSTRGLGKA----LARE--------FLLSGDRVVVASRSSESVRMTVTELEENLKE 227
ITG+ RG G+ LA++ + A S E ++ TV +E
Sbjct: 49 AFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVE----- 103
Query: 228 GMMAAGGSSKKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKP 287
G ++ DV + A +Q + + A+ EFG IDI ++N G +
Sbjct: 104 ---EQGR---------RIIARQADVRDLASLQAVVDEALAEFGHIDILVSNVGISN-QGE 150
Query: 288 LLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSST------P 341
++ T+++ I+ TNL+G+ R + M ++ +GG + + SST P
Sbjct: 151 VVSLTDQQWSDILQTNLIGAWHACRAVLPSMIERGQGGSVIFV-------SSTVGLRGAP 203
Query: 342 LTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQ 391
+ Y ++K G++ L SL E R + V++ +PG V T++ L+ ++
Sbjct: 204 GQSHYAASKHGVQGLMLSLANEVGRHNIRVNSVNPGAVNTEMALNEKLLK 253
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} Length = 604 | Back alignment and structure |
|---|
Score = 95.5 bits (238), Expect = 4e-21
Identities = 53/210 (25%), Positives = 88/210 (41%), Gaps = 34/210 (16%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVV---------ASRSSESVRMTVTELEENLKEG 228
+ V+ITG+ GLGK + EF G +VVV +S++ + V E+
Sbjct: 9 KVVIITGAGGGLGKYYSLEFAKLGAKVVVNDLGGALNGQGGNSKAADVVVDEIV------ 62
Query: 229 MMAAGGSSKKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPL 288
GG + + +V D K+ AV FG++ + INNAG + +
Sbjct: 63 --KNGGVAVAD---------YNNV---LDGDKIVETAVKNFGTVHVIINNAGILRD-ASM 107
Query: 289 LQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD-GAGSGGSSTPLTAVYG 347
+ T ++ + ++ +L G+ T+ A + Q K G I N AG G+ A Y
Sbjct: 108 KKMTEKDYKLVIDVHLNGAFAVTKAAWPYFQKQ-KYGRIVNTSSPAGLYGN--FGQANYA 164
Query: 348 STKCGLRQLQASLFKESKRSKVGVHTASPG 377
S K L +L KE + + + +P
Sbjct: 165 SAKSALLGFAETLAKEGAKYNIKANAIAPL 194
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} Length = 604 | Back alignment and structure |
|---|
Score = 87.8 bits (218), Expect = 1e-18
Identities = 51/238 (21%), Positives = 100/238 (42%), Gaps = 26/238 (10%)
Query: 141 GDSQMNALIWYSWLGGIIIGTMVGANMVLEEHCKAGPRNVVITGSTRGLGKALAREFLLS 200
+Q ++ + + + V+ITG+ GLGK A+ F
Sbjct: 286 LKNQYPFMLNDYATLTNEARKLPANDASGAPTVSLKDKVVLITGAGAGLGKEYAKWFAKY 345
Query: 201 GDRVVVA-SRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPADVQ 259
G +VVV + + V E++ AAGG + DV + D +
Sbjct: 346 GAKVVVNDFKDATKT---VDEIK--------AAGG---------EAWPDQHDVAK--DSE 383
Query: 260 KLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMR 319
+ ++++G+IDI +NNAG + + + + +E + + +L+G+ +R A
Sbjct: 384 AIIKNVIDKYGTIDILVNNAGILRD-RSFAKMSKQEWDSVQQVHLIGTFNLSRLAWPYFV 442
Query: 320 DQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPG 377
++ + G I N+ + SG A Y S+K G+ L ++ E ++ + V+ +P
Sbjct: 443 EK-QFGRIINI-TSTSGIYGNFGQANYSSSKAGILGLSKTMAIEGAKNNIKVNIVAPH 498
|
| >1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A* Length = 319 | Back alignment and structure |
|---|
Score = 92.8 bits (231), Expect = 5e-21
Identities = 56/210 (26%), Positives = 88/210 (41%), Gaps = 34/210 (16%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVV---------ASRSSESVRMTVTELEENLKEG 228
R V++TG+ GLG+A A F G VVV + S + V E+
Sbjct: 10 RVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIR------ 63
Query: 229 MMAAGGSSKKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPL 288
GG + N V +KL A++ FG ID+ +NNAG + +
Sbjct: 64 --RRGGKAVAN---------YDSV---EAGEKLVKTALDTFGRIDVVVNNAGILRD-RSF 108
Query: 289 LQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD-GAGSGGSSTPLTAVYG 347
+ ++E+ + I +L GS TR A M+ Q G I +G G+ A Y
Sbjct: 109 SRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQ-NYGRIIMTASASGIYGN--FGQANYS 165
Query: 348 STKCGLRQLQASLFKESKRSKVGVHTASPG 377
+ K GL L +L E +++ + +T +P
Sbjct: 166 AAKLGLLGLANTLVIEGRKNNIHCNTIAPN 195
|
| >3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium} Length = 322 | Back alignment and structure |
|---|
Score = 92.4 bits (230), Expect = 7e-21
Identities = 61/248 (24%), Positives = 96/248 (38%), Gaps = 40/248 (16%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVV----------ASRSSESVRMTVTELEENLKE 227
R V++TG+ G+G+A A F G RVVV + + + V E+
Sbjct: 28 RVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEIT----- 82
Query: 228 GMMAAGGSSKKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKP 287
AAGG + +V + L AV FG +D+ +NNAG + +
Sbjct: 83 ---AAGG---------EAVADGSNVADWDQAAGLIQTAVETFGGLDVLVNNAGIVRD-RM 129
Query: 288 LLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQ-----PKGGHIFNMD-GAGSGGSSTP 341
+ + EE + +++ +L G R A R G I N GAG GS
Sbjct: 130 IANTSEEEFDAVIAVHLKGHFATMRHAAAYWRGLSKAGKAVDGRIINTSSGAGLQGS--V 187
Query: 342 LTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMV--LTDLLLSGSTIQNKQMFNII 399
Y + K G+ L E R V V+ +P +T+ + + Q F+ +
Sbjct: 188 GQGNYSAAKAGIATLTLVGAAEMGRYGVTVNAIAPSARTRMTETVFAEMMATQDQDFDAM 247
Query: 400 CELPETVA 407
PE V+
Sbjct: 248 --APENVS 253
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} Length = 257 | Back alignment and structure |
|---|
Score = 91.1 bits (227), Expect = 8e-21
Identities = 55/222 (24%), Positives = 80/222 (36%), Gaps = 43/222 (19%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
++TG++ GLG A+ R G V+ + EL G
Sbjct: 10 FIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAEL-----------GA----- 53
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQ---FTNEEI 296
V DV AD FA EFG + +N AGT G K L + +
Sbjct: 54 ----AVRFRNADVTNEADATAALAFAKQEFGHVHGLVNCAGTAPGEKILGRSGPHALDSF 109
Query: 297 EQIVSTNLVGSILCTREAMRVMRDQP-----KGGHIFNM------DG-AGSGGSSTPLTA 344
+ V+ NL+G+ R A VM + G I N DG G A
Sbjct: 110 ARTVAVNLIGTFNMIRLAAEVMSQGEPDADGERGVIVNTASIAAFDGQIGQ--------A 161
Query: 345 VYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLS 386
Y ++K G+ L +E R + V T +PG+ T ++
Sbjct: 162 AYAASKGGVAALTLPAARELARFGIRVVTIAPGIFDTPMMAG 203
|
| >3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster} Length = 613 | Back alignment and structure |
|---|
Score = 94.5 bits (235), Expect = 1e-20
Identities = 53/209 (25%), Positives = 83/209 (39%), Gaps = 32/209 (15%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVV---------ASRSSESVRMTVTELEENLKEG 228
R V+TG+ GLG+ A F G +VVV S + + V E+
Sbjct: 20 RVAVVTGAGAGLGREYALLFAERGAKVVVNDLGGTHSGDGASQRAADIVVDEIR------ 73
Query: 229 MMAAGGSSKKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPL 288
AGG + V D K+ A+ FG +DI +NNAG + + L
Sbjct: 74 --KAGG---------EAVADYNSV---IDGAKVIETAIKAFGRVDILVNNAGILRD-RSL 118
Query: 289 LQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGS 348
++ + ++ + +L GS CT+ A M+ Q G I +G G+ Y +
Sbjct: 119 VKTSEQDWNLVNDVHLKGSFKCTQAAFPYMKKQNYGRIIMTSSNSGIYGN--FGQVNYTA 176
Query: 349 TKCGLRQLQASLFKESKRSKVGVHTASPG 377
K GL L ++ E R+ V + P
Sbjct: 177 AKMGLIGLANTVAIEGARNNVLCNVIVPT 205
|
| >2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} Length = 255 | Back alignment and structure |
|---|
Score = 90.0 bits (224), Expect = 2e-20
Identities = 30/211 (14%), Positives = 57/211 (27%), Gaps = 29/211 (13%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
+ ITGS G+G AL +G V+ R + ++
Sbjct: 4 IAITGSASGIGAALKELLARAGHTVIGIDRGQADIEADLSTPG----------------- 46
Query: 240 LVHAKVAGIACDVCEPADVQ-KLSNFA----VNEFGSIDIWINNAGTNKGFKPLL-QFTN 293
+ +A + V L A + + +N G + L +
Sbjct: 47 ---GRETAVAAVLDRCGGVLDGLVCCAGVGVTAANSGLVVAVNYFGVSALLDGLAEALSR 103
Query: 294 EEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGL 353
+ V + + + ++ G Y +K +
Sbjct: 104 GQQPAAVIVGSIAATQPGAAELPMVEAM-LAGDEARA--IELAEQQGQTHLAYAGSKYAV 160
Query: 354 RQLQASLFKESKRSKVGVHTASPGMVLTDLL 384
L + V ++ +PG V T LL
Sbjct: 161 TCLARRNVVDWAGRGVRLNVVAPGAVETPLL 191
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} Length = 287 | Back alignment and structure |
|---|
Score = 90.4 bits (225), Expect = 2e-20
Identities = 46/232 (19%), Positives = 72/232 (31%), Gaps = 45/232 (19%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVA------------SRSSESVRMTVTELEENLKE 227
V++TG RG G++ A + G +++ +S + E+E
Sbjct: 13 VLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVE----- 67
Query: 228 GMMAAGGSSKKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKP 287
G K DV + A V + AV EFG +D+ + NAG
Sbjct: 68 ---KTGR---------KAYTAEVDVRDRAAVSRELANAVAEFGKLDVVVANAGI---CPL 112
Query: 288 LLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNM----------DGAGSGG 337
+ + VG I A+ + G I G+GG
Sbjct: 113 GAHLPVQAFADAFDVDFVGVINTVHAALPYLT---SGASIITTGSVAGLIAAAQPPGAGG 169
Query: 338 SSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGST 389
P A Y K + L + + + P V TD+L S
Sbjct: 170 PQGPGGAGYSYAKQLVDSYTLQLAAQLAPQSIRANVIHPTNVNTDMLNSAPM 221
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* Length = 291 | Back alignment and structure |
|---|
Score = 90.3 bits (225), Expect = 3e-20
Identities = 46/226 (20%), Positives = 84/226 (37%), Gaps = 34/226 (15%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSES-VRMTVTELEENLKEGMMAAGGSS 236
+NV+ITG G+G+A++ F G + +A E T +E G
Sbjct: 48 KNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVE--------KEGV-- 97
Query: 237 KKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEI 296
K + D+ + + + V + GS++I +NN + L T E++
Sbjct: 98 -------KCVLLPGDLSDEQHCKDIVQETVRQLGSLNILVNNVAQQYPQQGLEYITAEQL 150
Query: 297 EQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSS------TPLTAVYGSTK 350
E+ N+ T+ A+ + +G I N +S Y +TK
Sbjct: 151 EKTFRINIFSYFHVTKAALSHL---KQGDVIINT-------ASIVAYEGNETLIDYSATK 200
Query: 351 CGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMF 396
+ SL + + + V+ +PG + T L+ S + F
Sbjct: 201 GAIVAFTRSLSQSLVQKGIRVNGVAPGPIWTPLIPSSFDEKKVSQF 246
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} Length = 249 | Back alignment and structure |
|---|
Score = 88.7 bits (221), Expect = 4e-20
Identities = 28/153 (18%), Positives = 68/153 (44%), Gaps = 26/153 (16%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ +ITG++ G+G A+AR G +V+++ + E ++ L++
Sbjct: 15 KTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNALKD-------------- 60
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
C++ + L +++ ++DI + NAG ++ +++ +
Sbjct: 61 ------NYTIEVCNLANKEECSNL----ISKTSNLDILVCNAGITSD-TLAIRMKDQDFD 109
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNM 330
+++ NL + + REA++ M + + G I N+
Sbjct: 110 KVIDINLKANFILNREAIKKMIQK-RYGRIINI 141
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* Length = 276 | Back alignment and structure |
|---|
Score = 88.2 bits (219), Expect = 9e-20
Identities = 45/251 (17%), Positives = 83/251 (33%), Gaps = 60/251 (23%)
Query: 175 AGPRNVVITGSTRGLGKALAREFL-LSGDRVVVASRSSESVRMTVTELEENLKEGMMAAG 233
+G ++TG +G+G A+ R+ L VV+ +R + V +L+
Sbjct: 2 SGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAE--------- 52
Query: 234 GSSKKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTN 293
D+ + ++ L +F E+G +D+ +NNAG +
Sbjct: 53 --------GLSPRFHQLDIDDLQSIRALRDFLRKEYGGLDVLVNNAGIA-FKVADPTPFH 103
Query: 294 EEIEQIVSTNLVGSILCTREAMRVMRDQP----------KGGHIFNMDGAGSGGSSTPLT 343
+ E + TN G+ E + +++ Q S +T
Sbjct: 104 IQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKFRSETIT 163
Query: 344 ---------------------------AVYGSTKCGL----RQLQASLFKESKRSKVGVH 372
+ YG TK G+ R L ++ K K+ ++
Sbjct: 164 EEELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLN 223
Query: 373 TASPGMVLTDL 383
PG V TD+
Sbjct: 224 ACCPGWVRTDM 234
|
| >3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} Length = 281 | Back alignment and structure |
|---|
Score = 86.8 bits (216), Expect = 3e-19
Identities = 50/238 (21%), Positives = 89/238 (37%), Gaps = 28/238 (11%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRM-----TVTELEENLKEGMMAA 232
+ +ITG RG+G++ A +G + + R S + T +L E + +
Sbjct: 11 KTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVAL-VEKT 69
Query: 233 GGSSKKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFT 292
G + DV + A ++ A + G IDI I NAG + L +
Sbjct: 70 GR---------RCISAKVDVKDRAALESFVAEAEDTLGGIDIAITNAGIST-IALLPEVE 119
Query: 293 NEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGS--GGSSTPLTAVYGSTK 350
+ + ++++ TNL G+ M + G I + S G S+ A Y S+K
Sbjct: 120 SAQWDEVIGTNLTGTFNTIAAVAPGMIKR-NYGRIVTV---SSMLGHSANFAQASYVSSK 175
Query: 351 CGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVAR 408
G+ L + + V+ +PG + T + N +F + E
Sbjct: 176 WGVIGLTKCAAHDLVGYGITVNAVAPGNIETPM------THNDFVFGTMRPDLEKPTL 227
|
| >1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2 Length = 242 | Back alignment and structure |
|---|
Score = 79.6 bits (197), Expect = 5e-17
Identities = 51/222 (22%), Positives = 77/222 (34%), Gaps = 53/222 (23%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
R+ ++TG GLG+A A G RVVV E
Sbjct: 3 RSALVTGGASGLGRAAALALKARGYRVVVLDLRREG------------------------ 38
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQ---FTNE 294
+ + DV DV++ A E + ++ AG K L + E
Sbjct: 39 -----EDLIYVEGDVTREEDVRRAVARAQ-EEAPLFAVVSAAGVGLAEKILGKEGPHGLE 92
Query: 295 EIEQIVSTNLVGSILCTREAMRVMRDQPKG-----GHIFNM------DG-AGSGGSSTPL 342
+++ NL+G+ R A MR+ P G I N +G G
Sbjct: 93 SFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFEGQIGQ------- 145
Query: 343 TAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLL 384
A Y ++K G+ L +E + V T +PG+ T LL
Sbjct: 146 -AAYAASKGGVVALTLPAARELAGWGIRVVTVAPGLFDTPLL 186
|
| >3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans} Length = 257 | Back alignment and structure |
|---|
Score = 80.0 bits (198), Expect = 5e-17
Identities = 56/224 (25%), Positives = 84/224 (37%), Gaps = 49/224 (21%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
V+TG GLG A + L +G +VVV E V V +L +
Sbjct: 12 AVVTGGASGLGLATTKRLLDAGAQVVVLDIRGEDV---VADLGDR--------------- 53
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQ---FTNEEI 296
A DV + A V + G++ I +N AGT + L + F+
Sbjct: 54 -----ARFAAADVTDEAAVASALD-LAETMGTLRIVVNCAGTGNAIRVLSRDGVFSLAAF 107
Query: 297 EQIVSTNLVGSILCTREAMRVMRDQP-------KGGHIFNM------DG-AGSGGSSTPL 342
+IV NLVGS R A + + G I N DG G
Sbjct: 108 RKIVDINLVGSFNVLRLAAERIAKTEPVGPNAEERGVIINTASVAAFDGQIGQ------- 160
Query: 343 TAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLS 386
A Y ++K G+ + + ++ ++ V T +PG+ T LL S
Sbjct: 161 -AAYSASKGGVVGMTLPIARDLASHRIRVMTIAPGLFDTPLLAS 203
|
| >3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3q6i_A* 3m1l_A Length = 454 | Back alignment and structure |
|---|
Score = 81.6 bits (202), Expect = 9e-17
Identities = 34/155 (21%), Positives = 56/155 (36%), Gaps = 25/155 (16%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ V+TG+ RG+G +A F G VV E+LK GG+
Sbjct: 214 KVAVVTGAARGIGATIAEVFARDGATVVAIDVDGA---------AEDLKRVADKVGGT-- 262
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFG-SIDIWINNAG-TNKGFKPLLQFTNEE 295
+ DV V K++ G +DI +NNAG T L +
Sbjct: 263 ---------ALTLDVTADDAVDKITAHVTEHHGGKVDILVNNAGITRDKL--LANMDEKR 311
Query: 296 IEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNM 330
+ +++ NL+ T + +GG + +
Sbjct: 312 WDAVIAVNLLAPQRLTEGLVGNGTIG-EGGRVIGL 345
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} Length = 311 | Back alignment and structure |
|---|
Score = 75.8 bits (186), Expect = 3e-15
Identities = 50/281 (17%), Positives = 84/281 (29%), Gaps = 97/281 (34%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
R V+TG +G+G + ++ +G VV+ R V +L+ +
Sbjct: 13 RCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNS------------- 59
Query: 238 KNLVHAKVAGIACDVCEPAD-VQKLSNFAVNEFGSIDIWINNAG---------------- 280
H V DV +P + L++F FG +DI +NNAG
Sbjct: 60 ---NHENVVFHQLDVTDPIATMSSLADFIKTHFGKLDILVNNAGVAGFSVDADRFKAMIS 116
Query: 281 -------------TNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKG--- 324
+ L+ T E E+ + N G T + +++
Sbjct: 117 DIGEDSEELVKIYEKPEAQELMSETYELAEECLKINYNGVKSVTEVLIPLLQLSDSPRIV 176
Query: 325 ---------GHIFNMDGAGSGGSSTPLT-----------------------------AVY 346
++ N G LT A Y
Sbjct: 177 NVSSSTGSLKYVSNETALEILGDGDALTEERIDMVVNMLLKDFKENLIETNGWPSFGAAY 236
Query: 347 GSTKCGL----RQLQASLFKESKRSKVGVHTASPGMVLTDL 383
++K L R L + K V+ PG+V T++
Sbjct: 237 TTSKACLNAYTRVLANKI------PKFQVNCVCPGLVKTEM 271
|
| >1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A* Length = 257 | Back alignment and structure |
|---|
Score = 72.4 bits (178), Expect = 2e-14
Identities = 30/232 (12%), Positives = 57/232 (24%), Gaps = 69/232 (29%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
+VI+G G+G A + +G ++V
Sbjct: 4 IVISGCATGIGAATRKVLEAAGHQIVGIDIRD---------------------------- 35
Query: 240 LVHAKVAGIACDVCEPADVQK-LSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQ 298
A + D+ ++ +++ +D + AG K L
Sbjct: 36 ------AEVIADLSTAEGRKQAIADVLAKCSKGMDGLVLCAGLGPQTKVL--------GN 81
Query: 299 IVSTNLVGSILCTREAMRVMRDQPKG--------------------------GHIFNMDG 332
+VS N G+ + ++ + G
Sbjct: 82 VVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASAHLAFDKNPLALALEAGEEAKARA 141
Query: 333 AGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLL 384
Y +K L + V ++T +PG T LL
Sbjct: 142 IVEHAGEQGGNLAYAGSKNALTVAVRKRAAAWGEAGVRLNTIAPGATETPLL 193
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 66.0 bits (160), Expect = 2e-11
Identities = 82/481 (17%), Positives = 131/481 (27%), Gaps = 172/481 (35%)
Query: 83 KDVIFRVNGPGSQSSDEYCKAVAKVEK-VFSSIAI-----------QIGRCIVTMMSTG- 129
KD++ V + CK V + K + S I R T++S
Sbjct: 19 KDILS-VFEDAFVD-NFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE 76
Query: 130 --VVLAVGFQLSGGDSQMNALIWYSWLGGIIIGTMVGANMVLEEHCKAGPRNVVITGSTR 187
V V L ++N Y +L I + + + R
Sbjct: 77 EMVQKFVEEVL-----RIN----YKFLMSPI-----------KTEQRQPSMMTRMYIEQR 116
Query: 188 GLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKE----------GMMAAGGSSK 237
L D V A + ++ +L + L E G+ GS K
Sbjct: 117 DR---------LYNDNQVFAKYNVSRLQP-YLKLRQALLELRPAKNVLIDGV---LGSGK 163
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
+ A DVC VQ +F + F W+N N +E
Sbjct: 164 TWV--------ALDVCLSYKVQCKMDFKI--F-----WLNLKNCNS--------PETVLE 200
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQ 357
+ L + D N S+ L S + LR+L
Sbjct: 201 MLQK-------LLYQ------IDP-------NWTSRSDHSSNIKLR--IHSIQAELRRLL 238
Query: 358 ASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQ---MFNIICE-LPET----VART 409
S K + + VL + +QN + FN+ C+ L T V
Sbjct: 239 KS--KPYENCLL---------VLLN-------VQNAKAWNAFNLSCKILLTTRFKQVTDF 280
Query: 410 LVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWFDDQGR----------ALYAAE- 458
L LTP + +L+ +L D R ++ A
Sbjct: 281 LSAATTTHISLDHHSMTLTPDE-VKSLLLKYL--DCRPQDLPREVLTTNPRRLSIIAESI 337
Query: 459 ---ADRIRNW---------------------AENRARFSFTDAMEMYTENTWVSVFSLSV 494
NW AE R F D + ++ + + LS+
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF---DRLSVFPPSAHIPTILLSL 394
Query: 495 V 495
+
Sbjct: 395 I 395
|
| >3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} Length = 291 | Back alignment and structure |
|---|
Score = 61.5 bits (150), Expect = 1e-10
Identities = 31/125 (24%), Positives = 45/125 (36%), Gaps = 35/125 (28%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
R VVITG+ GLG ARE G V++A R + +
Sbjct: 17 RTVVITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAARTMA--------------- 61
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAG--------TNKGFKPLL 289
+V D+ + + V++ + D+ INNAG T GF+
Sbjct: 62 -----GQVEVRELDLQDLSSVRR----FADGVSGADVLINNAGIMAVPYALTVDGFE--S 110
Query: 290 QF-TN 293
Q TN
Sbjct: 111 QIGTN 115
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* Length = 287 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 2e-06
Identities = 12/103 (11%), Positives = 23/103 (22%), Gaps = 25/103 (24%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ V+ T +G A G VV+ R + + + +
Sbjct: 120 KKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNK-------------- 165
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAG 280
KV A + + A +
Sbjct: 166 ----RFKVNVTAAETADDASRAEA-------VKGAHFVFTAGA 197
|
| >3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} Length = 795 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 3e-05
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 22/87 (25%)
Query: 180 VVITGSTRGLGKALAREFLLS-GDR-VVVASRS---SESVRMTVTELEENLKEGMMAAGG 234
V++TG T LG +AR ++ G R +V+ SR + V +L A G
Sbjct: 533 VLVTGGTGALGAEVARHLVIERGVRNLVLVSRRGPAASGAAELVAQLT--------AYG- 583
Query: 235 SSKKNLVHAKVAGIACDVCEPADVQKL 261
A+V+ ACDV + + K+
Sbjct: 584 --------AEVSLQACDVADRETLAKV 602
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 512 | |||
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 100.0 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 100.0 | |
| 4hp8_A | 247 | 2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi | 100.0 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 100.0 | |
| 4gkb_A | 258 | 3-oxoacyl-[acyl-carrier protein] reductase; putati | 100.0 | |
| 4b79_A | 242 | PA4098, probable short-chain dehydrogenase; oxidor | 100.0 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 100.0 | |
| 4h15_A | 261 | Short chain alcohol dehydrogenase-related dehydro; | 100.0 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 100.0 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 100.0 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 100.0 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 100.0 | |
| 3op4_A | 248 | 3-oxoacyl-[acyl-carrier protein] reductase; 3-keto | 100.0 | |
| 4ibo_A | 271 | Gluconate dehydrogenase; enzyme function initiativ | 100.0 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 100.0 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 100.0 | |
| 3oid_A | 258 | Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa | 100.0 | |
| 3tsc_A | 277 | Putative oxidoreductase; structural genomics, seat | 100.0 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 100.0 | |
| 3uve_A | 286 | Carveol dehydrogenase ((+)-trans-carveol dehydrog; | 100.0 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 100.0 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 100.0 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 100.0 | |
| 3tox_A | 280 | Short chain dehydrogenase; structural genomics, PS | 100.0 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 100.0 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 100.0 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 100.0 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 100.0 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 100.0 | |
| 4fc7_A | 277 | Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman | 100.0 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 100.0 | |
| 3osu_A | 246 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 100.0 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 100.0 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 100.0 | |
| 3v2h_A | 281 | D-beta-hydroxybutyrate dehydrogenase; structural g | 100.0 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 100.0 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 100.0 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 100.0 | |
| 3rih_A | 293 | Short chain dehydrogenase or reductase; structural | 100.0 | |
| 3s55_A | 281 | Putative short-chain dehydrogenase/reductase; stru | 100.0 | |
| 3tzq_B | 271 | Short-chain type dehydrogenase/reductase; ssgcid, | 100.0 | |
| 3grp_A | 266 | 3-oxoacyl-(acyl carrierprotein) reductase; structu | 100.0 | |
| 3uf0_A | 273 | Short-chain dehydrogenase/reductase SDR; gluconate | 100.0 | |
| 4dmm_A | 269 | 3-oxoacyl-[acyl-carrier-protein] reductase; rossma | 100.0 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 100.0 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 100.0 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 100.0 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 100.0 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 100.0 | |
| 3oec_A | 317 | Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; | 100.0 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 100.0 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 100.0 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 100.0 | |
| 3zv4_A | 281 | CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox | 100.0 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 100.0 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 100.0 | |
| 3n74_A | 261 | 3-ketoacyl-(acyl-carrier-protein) reductase; seatt | 100.0 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 100.0 | |
| 2uvd_A | 246 | 3-oxoacyl-(acyl-carrier-protein) reductase; beta-k | 100.0 | |
| 1vl8_A | 267 | Gluconate 5-dehydrogenase; TM0441, structural geno | 100.0 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 100.0 | |
| 4dry_A | 281 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 100.0 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 100.0 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 100.0 | |
| 1x1t_A | 260 | D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S | 100.0 | |
| 1zem_A | 262 | Xylitol dehydrogenase; rossmann fold, dinucleotide | 100.0 | |
| 1iy8_A | 267 | Levodione reductase; oxidoreductase; HET: NAD; 1.6 | 100.0 | |
| 3sc4_A | 285 | Short chain dehydrogenase (A0QTM2 homolog); ssgcid | 100.0 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 100.0 | |
| 2zat_A | 260 | Dehydrogenase/reductase SDR family member 4; alpha | 100.0 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 100.0 | |
| 3cxt_A | 291 | Dehydrogenase with different specificities; rossma | 100.0 | |
| 3ezl_A | 256 | Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA | 100.0 | |
| 3e03_A | 274 | Short chain dehydrogenase; structural genomics, PS | 100.0 | |
| 4iin_A | 271 | 3-ketoacyl-acyl carrier protein reductase (FABG); | 100.0 | |
| 3tpc_A | 257 | Short chain alcohol dehydrogenase-related dehydro; | 100.0 | |
| 1e7w_A | 291 | Pteridine reductase; dihydrofolate reductase, shor | 100.0 | |
| 4dyv_A | 272 | Short-chain dehydrogenase/reductase SDR; structura | 100.0 | |
| 2ew8_A | 249 | (S)-1-phenylethanol dehydrogenase; transferase; 2. | 100.0 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 100.0 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 100.0 | |
| 1uls_A | 245 | Putative 3-oxoacyl-acyl carrier protein reductase; | 100.0 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 100.0 | |
| 3rku_A | 287 | Oxidoreductase YMR226C; substrate fingerprint, sho | 100.0 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 100.0 | |
| 3a28_C | 258 | L-2.3-butanediol dehydrogenase; chiral substrate r | 100.0 | |
| 2pd4_A | 275 | Enoyl-[acyl-carrier-protein] reductase [NADH]; ant | 100.0 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 100.0 | |
| 3vtz_A | 269 | Glucose 1-dehydrogenase; rossmann fold, oxidoreduc | 100.0 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 100.0 | |
| 2z1n_A | 260 | Dehydrogenase; reductase, SDR, oxidoreductase; 1.8 | 100.0 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 100.0 | |
| 2b4q_A | 276 | Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier | 100.0 | |
| 2p91_A | 285 | Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD | 100.0 | |
| 3kzv_A | 254 | Uncharacterized oxidoreductase YIR035C; cytoplasmi | 100.0 | |
| 2rhc_B | 277 | Actinorhodin polyketide ketoreductase; oxidoreduct | 100.0 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 100.0 | |
| 3gk3_A | 269 | Acetoacetyl-COA reductase; acetoacetyl-CO reductas | 100.0 | |
| 1xhl_A | 297 | Short-chain dehydrogenase/reductase family member | 100.0 | |
| 3gdg_A | 267 | Probable NADP-dependent mannitol dehydrogenase; ro | 100.0 | |
| 3i4f_A | 264 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 100.0 | |
| 3uxy_A | 266 | Short-chain dehydrogenase/reductase SDR; structura | 100.0 | |
| 1xkq_A | 280 | Short-chain reductase family member (5D234); parra | 100.0 | |
| 2x9g_A | 288 | PTR1, pteridine reductase; short chain dehydrogena | 100.0 | |
| 4iiu_A | 267 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 100.0 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 100.0 | |
| 3p19_A | 266 | BFPVVD8, putative blue fluorescent protein; rossma | 100.0 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 100.0 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 100.0 | |
| 1hdc_A | 254 | 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi | 100.0 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 100.0 | |
| 2q2v_A | 255 | Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore | 100.0 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 100.0 | |
| 3gem_A | 260 | Short chain dehydrogenase; structural genomics, AP | 100.0 | |
| 1spx_A | 278 | Short-chain reductase family member (5L265); paral | 100.0 | |
| 2qhx_A | 328 | Pteridine reductase 1; oxidoreductase, short-chain | 100.0 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 100.0 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 100.0 | |
| 1mxh_A | 276 | Pteridine reductase 2; SDR topology, protein-subst | 100.0 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 100.0 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 100.0 | |
| 3un1_A | 260 | Probable oxidoreductase; structural genomics, PSI- | 100.0 | |
| 3icc_A | 255 | Putative 3-oxoacyl-(acyl carrier protein) reducta; | 100.0 | |
| 3tl3_A | 257 | Short-chain type dehydrogenase/reductase; ssgcid, | 100.0 | |
| 2d1y_A | 256 | Hypothetical protein TT0321; strucrtural genomics, | 100.0 | |
| 3nrc_A | 280 | Enoyl-[acyl-carrier-protein] reductase (NADH); ros | 100.0 | |
| 3kvo_A | 346 | Hydroxysteroid dehydrogenase-like protein 2; HSDL2 | 100.0 | |
| 3ak4_A | 263 | NADH-dependent quinuclidinone reductase; SDR, (R)- | 100.0 | |
| 3qlj_A | 322 | Short chain dehydrogenase; structural genomics, se | 100.0 | |
| 1nff_A | 260 | Putative oxidoreductase RV2002; directed evolution | 100.0 | |
| 1yde_A | 270 | Retinal dehydrogenase/reductase 3; oxidoreductase, | 100.0 | |
| 2fwm_X | 250 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e | 100.0 | |
| 1hxh_A | 253 | 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b | 100.0 | |
| 4e3z_A | 272 | Putative oxidoreductase protein; PSI-biology, stru | 100.0 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 100.0 | |
| 2qq5_A | 260 | DHRS1, dehydrogenase/reductase SDR family member 1 | 100.0 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 100.0 | |
| 2wyu_A | 261 | Enoyl-[acyl carrier protein] reductase; oxidoreduc | 100.0 | |
| 3rd5_A | 291 | Mypaa.01249.C; ssgcid, structural genomics, seattl | 100.0 | |
| 2nm0_A | 253 | Probable 3-oxacyl-(acyl-carrier-protein) reductas; | 100.0 | |
| 1qsg_A | 265 | Enoyl-[acyl-carrier-protein] reductase; enoyl redu | 100.0 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 100.0 | |
| 1uzm_A | 247 | 3-oxoacyl-[acyl-carrier protein] reductase; beta-k | 100.0 | |
| 1oaa_A | 259 | Sepiapterin reductase; tetrahydrobiopterin, oxidor | 100.0 | |
| 2h7i_A | 269 | Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi | 100.0 | |
| 1xq1_A | 266 | Putative tropinone reducatse; structural genomics, | 100.0 | |
| 1gee_A | 261 | Glucose 1-dehydrogenase; short-chain dehydrogenase | 100.0 | |
| 1h5q_A | 265 | NADP-dependent mannitol dehydrogenase; oxidoreduct | 100.0 | |
| 3m1a_A | 281 | Putative dehydrogenase; short, PSI, MCSG, structur | 100.0 | |
| 2ekp_A | 239 | 2-deoxy-D-gluconate 3-dehydrogenase; structural ge | 100.0 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 100.0 | |
| 2ag5_A | 246 | DHRS6, dehydrogenase/reductase (SDR family) member | 100.0 | |
| 1zmo_A | 244 | Halohydrin dehalogenase; haloalcohol dehalogenase, | 100.0 | |
| 3u9l_A | 324 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 100.0 | |
| 3asu_A | 248 | Short-chain dehydrogenase/reductase SDR; SDR famil | 100.0 | |
| 2nwq_A | 272 | Probable short-chain dehydrogenase; oxidoreductase | 100.0 | |
| 2dtx_A | 264 | Glucose 1-dehydrogenase related protein; rossmann | 100.0 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 100.0 | |
| 2c07_A | 285 | 3-oxoacyl-(acyl-carrier protein) reductase; oxidor | 100.0 | |
| 4e4y_A | 244 | Short chain dehydrogenase family protein; structur | 100.0 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 100.0 | |
| 3ppi_A | 281 | 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de | 100.0 | |
| 2cfc_A | 250 | 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor | 100.0 | |
| 2hq1_A | 247 | Glucose/ribitol dehydrogenase; CTH-1438, structura | 100.0 | |
| 2wsb_A | 254 | Galactitol dehydrogenase; oxidoreductase, SDR, ros | 100.0 | |
| 3ctm_A | 279 | Carbonyl reductase; alcohol dehydrogenase, short-c | 100.0 | |
| 1zk4_A | 251 | R-specific alcohol dehydrogenase; short chain redu | 100.0 | |
| 1edo_A | 244 | Beta-keto acyl carrier protein reductase; nucleoti | 100.0 | |
| 3lt0_A | 329 | Enoyl-ACP reductase; triclosan, triclosan variant, | 100.0 | |
| 1w6u_A | 302 | 2,4-dienoyl-COA reductase, mitochondrial precursor | 100.0 | |
| 1gz6_A | 319 | Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF | 100.0 | |
| 1zmt_A | 254 | Haloalcohol dehalogenase HHEC; halohydrin dehaloge | 100.0 | |
| 2pnf_A | 248 | 3-oxoacyl-[acyl-carrier-protein] reductase; short | 100.0 | |
| 2pd6_A | 264 | Estradiol 17-beta-dehydrogenase 8; short-chain deh | 100.0 | |
| 2bgk_A | 278 | Rhizome secoisolariciresinol dehydrogenase; oxidor | 100.0 | |
| 2bd0_A | 244 | Sepiapterin reductase; oxidoreductase; HET: NAP BI | 100.0 | |
| 2o23_A | 265 | HADH2 protein; HSD17B10, schad, ERAB, type II HADH | 100.0 | |
| 3afn_B | 258 | Carbonyl reductase; alpha/beta/alpha, rossmann-fol | 100.0 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 100.0 | |
| 1yxm_A | 303 | Pecra, peroxisomal trans 2-enoyl COA reductase; pe | 100.0 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 100.0 | |
| 3u0b_A | 454 | Oxidoreductase, short chain dehydrogenase/reducta | 100.0 | |
| 3s8m_A | 422 | Enoyl-ACP reductase; rossmann fold, oxidoreductase | 100.0 | |
| 3zu3_A | 405 | Putative reductase YPO4104/Y4119/YP_4011; oxidored | 100.0 | |
| 2ph3_A | 245 | 3-oxoacyl-[acyl carrier protein] reductase; TTHA04 | 100.0 | |
| 3d3w_A | 244 | L-xylulose reductase; uronate cycle, short-chain d | 100.0 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 100.0 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 100.0 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 100.0 | |
| 2ptg_A | 319 | Enoyl-acyl carrier reductase; apicomplexa, enoyl ( | 100.0 | |
| 3uce_A | 223 | Dehydrogenase; rossmann fold, oxidoreductase; HET: | 100.0 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 100.0 | |
| 1o5i_A | 249 | 3-oxoacyl-(acyl carrier protein) reductase; TM1169 | 100.0 | |
| 2ehd_A | 234 | Oxidoreductase, oxidoreductase, short-chain dehydr | 100.0 | |
| 2o2s_A | 315 | Enoyl-acyl carrier reductase; enoyl reductase, tri | 100.0 | |
| 1cyd_A | 244 | Carbonyl reductase; short-chain dehydrogenase, oxi | 100.0 | |
| 1d7o_A | 297 | Enoyl-[acyl-carrier protein] reductase (NADH) PRE; | 100.0 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 100.0 | |
| 1dhr_A | 241 | Dihydropteridine reductase; oxidoreductase(acting | 100.0 | |
| 1jtv_A | 327 | 17 beta-hydroxysteroid dehydrogenase type 1; stero | 100.0 | |
| 3e9n_A | 245 | Putative short-chain dehydrogenase/reductase; stru | 100.0 | |
| 3oml_A | 613 | GH14720P, peroxisomal multifunctional enzyme type | 100.0 | |
| 1xu9_A | 286 | Corticosteroid 11-beta-dehydrogenase, isozyme 1; h | 100.0 | |
| 1ooe_A | 236 | Dihydropteridine reductase; structural genomics, P | 100.0 | |
| 1sby_A | 254 | Alcohol dehydrogenase; ternary complex, NAD, trifl | 100.0 | |
| 1yo6_A | 250 | Putative carbonyl reductase sniffer; tyrosine-depe | 100.0 | |
| 1sny_A | 267 | Sniffer CG10964-PA; alpha and beta protein, rossma | 100.0 | |
| 3orf_A | 251 | Dihydropteridine reductase; alpha-beta-alpha sandw | 100.0 | |
| 4eue_A | 418 | Putative reductase CA_C0462; TER, biofuel, synthet | 100.0 | |
| 1uay_A | 242 | Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid | 99.97 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 99.97 | |
| 1fjh_A | 257 | 3alpha-hydroxysteroid dehydrogenase/carbonyl reduc | 99.97 | |
| 2uv8_A | 1887 | Fatty acid synthase subunit alpha (FAS2); fatty ac | 99.97 | |
| 3qp9_A | 525 | Type I polyketide synthase pikaii; rossmann fold, | 99.96 | |
| 2pff_A | 1688 | Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl | 99.96 | |
| 2uv9_A | 1878 | Fatty acid synthase alpha subunits; fungal, dehydr | 99.96 | |
| 2yut_A | 207 | Putative short-chain oxidoreductase; alpha and bet | 99.96 | |
| 3d7l_A | 202 | LIN1944 protein; APC89317, structural genomics, PS | 99.95 | |
| 3zen_D | 3089 | Fatty acid synthase; transferase, mycolic acid bio | 99.94 | |
| 3mje_A | 496 | AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1. | 99.94 | |
| 3slk_A | 795 | Polyketide synthase extender module 2; rossmann fo | 99.94 | |
| 2dkn_A | 255 | 3-alpha-hydroxysteroid dehydrogenase; oxidoreducta | 99.94 | |
| 2fr1_A | 486 | Erythromycin synthase, eryai; short chain dehydrog | 99.92 | |
| 2z5l_A | 511 | Tylkr1, tylactone synthase starter module and modu | 99.92 | |
| 3rft_A | 267 | Uronate dehydrogenase; apoenzyme, rossmann fold, N | 99.9 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 99.87 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 99.84 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 99.84 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 99.84 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 99.83 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 99.83 | |
| 4ggo_A | 401 | Trans-2-enoyl-COA reductase; rossmann fold, oxidor | 99.81 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 99.81 | |
| 2z1m_A | 345 | GDP-D-mannose dehydratase; short-chain dehydrogena | 99.81 | |
| 1rkx_A | 357 | CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; | 99.8 | |
| 1orr_A | 347 | CDP-tyvelose-2-epimerase; rossmann fold, short-cha | 99.8 | |
| 2c29_D | 337 | Dihydroflavonol 4-reductase; flavonoids, short deh | 99.79 | |
| 2pk3_A | 321 | GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor | 99.79 | |
| 1i24_A | 404 | Sulfolipid biosynthesis protein SQD1; SDR, short-c | 99.78 | |
| 3nzo_A | 399 | UDP-N-acetylglucosamine 4,6-dehydratase; structura | 99.78 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 99.78 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 99.77 | |
| 1gy8_A | 397 | UDP-galactose 4-epimerase; oxidoreductase; HET: NA | 99.77 | |
| 2hun_A | 336 | 336AA long hypothetical DTDP-glucose 4,6-dehydrat; | 99.77 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 99.77 | |
| 1kew_A | 361 | RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo | 99.77 | |
| 3ay3_A | 267 | NAD-dependent epimerase/dehydratase; glucuronic ac | 99.76 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 99.76 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 99.76 | |
| 2hrz_A | 342 | AGR_C_4963P, nucleoside-diphosphate-sugar epimeras | 99.76 | |
| 1ek6_A | 348 | UDP-galactose 4-epimerase; short-chain dehydrogena | 99.75 | |
| 2p4h_X | 322 | Vestitone reductase; NADPH-dependent reductase, is | 99.75 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 99.74 | |
| 1db3_A | 372 | GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya | 99.74 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 99.74 | |
| 1n7h_A | 381 | GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, | 99.73 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 99.73 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 99.73 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 99.73 | |
| 1oc2_A | 348 | DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos | 99.73 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 99.72 | |
| 3ko8_A | 312 | NAD-dependent epimerase/dehydratase; isomerase, UD | 99.72 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 99.72 | |
| 1t2a_A | 375 | GDP-mannose 4,6 dehydratase; structural genomics c | 99.72 | |
| 2p5y_A | 311 | UDP-glucose 4-epimerase; TTHA0591, structural geno | 99.72 | |
| 1udb_A | 338 | Epimerase, UDP-galactose-4-epimerase; isomerase; H | 99.72 | |
| 4f6c_A | 427 | AUSA reductase domain protein; thioester reductase | 99.71 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 99.71 | |
| 1rpn_A | 335 | GDP-mannose 4,6-dehydratase; short-chain dehydroge | 99.71 | |
| 3sxp_A | 362 | ADP-L-glycero-D-mannoheptose-6-epimerase; rossman | 99.71 | |
| 3ehe_A | 313 | UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, | 99.71 | |
| 2rh8_A | 338 | Anthocyanidin reductase; flavonoids, rossmann fold | 99.71 | |
| 2c20_A | 330 | UDP-glucose 4-epimerase; carbohydrate metabolism, | 99.7 | |
| 4egb_A | 346 | DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce | 99.7 | |
| 2q1w_A | 333 | Putative nucleotide sugar epimerase/ dehydratase; | 99.69 | |
| 1r6d_A | 337 | TDP-glucose-4,6-dehydratase; rossmann fold, short- | 99.69 | |
| 2a35_A | 215 | Hypothetical protein PA4017; alpha-beta-alpha sand | 99.69 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 99.68 | |
| 2yy7_A | 312 | L-threonine dehydrogenase; thermolabIle, flavobact | 99.67 | |
| 2x6t_A | 357 | ADP-L-glycero-D-manno-heptose-6-epimerase; isomera | 99.66 | |
| 1z45_A | 699 | GAL10 bifunctional protein; epimerase, mutarotase, | 99.66 | |
| 2bll_A | 345 | Protein YFBG; decarboxylase, short chain dehydroge | 99.66 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 99.66 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 99.66 | |
| 2b69_A | 343 | UDP-glucuronate decarboxylase 1; UDP-glucoronic ac | 99.63 | |
| 3ajr_A | 317 | NDP-sugar epimerase; L-threonine dehydrogenase, L- | 99.62 | |
| 1e6u_A | 321 | GDP-fucose synthetase; epimerase/reductase, SDR, R | 99.61 | |
| 2ggs_A | 273 | 273AA long hypothetical DTDP-4-dehydrorhamnose red | 99.61 | |
| 4dqv_A | 478 | Probable peptide synthetase NRP (peptide synthase; | 99.6 | |
| 1vl0_A | 292 | DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s | 99.59 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 99.59 | |
| 1eq2_A | 310 | ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin | 99.58 | |
| 1z7e_A | 660 | Protein aRNA; rossmann fold, OB-like fold, hydrola | 99.58 | |
| 4b8w_A | 319 | GDP-L-fucose synthase; oxidoreductase; HET: NAP GD | 99.56 | |
| 3sc6_A | 287 | DTDP-4-dehydrorhamnose reductase; RFBD, structural | 99.51 | |
| 1n2s_A | 299 | DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold | 99.51 | |
| 4f6l_B | 508 | AUSA reductase domain protein; thioester reductase | 99.51 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 99.51 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 99.5 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 99.5 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 99.49 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 99.47 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 99.47 | |
| 3vps_A | 321 | TUNA, NAD-dependent epimerase/dehydratase; tunicam | 99.45 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 99.45 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 99.37 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 99.36 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 99.34 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 99.34 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 99.33 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 99.33 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 99.28 | |
| 2v6g_A | 364 | Progesterone 5-beta-reductase; tyrosine-dependent | 99.27 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 99.25 | |
| 3st7_A | 369 | Capsular polysaccharide synthesis enzyme CAP5F; ro | 99.25 | |
| 1u7z_A | 226 | Coenzyme A biosynthesis bifunctional protein coabc | 99.15 | |
| 4b4o_A | 298 | Epimerase family protein SDR39U1; isomerase; HET: | 98.83 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 98.79 | |
| 2gk4_A | 232 | Conserved hypothetical protein; alpha-beta-alpha s | 98.76 | |
| 3gxh_A | 157 | Putative phosphatase (DUF442); YP_001181608.1, str | 98.51 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 98.46 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 98.45 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 98.41 | |
| 2o7s_A | 523 | DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat | 98.4 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 98.33 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 98.29 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 98.29 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 98.21 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 98.13 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 98.07 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 98.04 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 98.03 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 98.0 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 97.98 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 97.98 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 97.95 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 97.93 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 97.92 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 97.91 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 97.87 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 97.87 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 97.84 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 97.77 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 97.74 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 97.71 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 97.66 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 97.64 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 97.63 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 97.57 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 97.56 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 97.54 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 97.53 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 97.47 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 97.33 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 97.32 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 97.31 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 97.29 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 97.28 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 97.27 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 97.26 | |
| 1p9o_A | 313 | Phosphopantothenoylcysteine synthetase; ligase; 2. | 97.24 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 97.23 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 97.22 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 97.18 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 97.14 | |
| 1hye_A | 313 | L-lactate/malate dehydrogenase; nucleotide binding | 97.1 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 97.08 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 96.99 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 96.99 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 96.99 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 96.94 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 96.92 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 96.9 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 96.89 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 96.88 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 96.82 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 96.79 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 96.78 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 96.77 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 96.76 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 96.69 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 96.67 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 96.61 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 96.6 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 96.57 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 96.56 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 96.53 | |
| 1gu7_A | 364 | Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s | 96.47 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 96.47 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 96.4 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 96.38 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 96.35 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 96.34 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 96.34 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 96.34 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 96.27 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 96.27 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 96.18 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 96.16 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 96.16 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 96.1 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 96.09 | |
| 1h2b_A | 359 | Alcohol dehydrogenase; oxidoreductase, archaea, hy | 96.08 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 96.06 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 96.05 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 95.97 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 95.95 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 95.91 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 95.91 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 95.89 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 95.89 | |
| 3iup_A | 379 | Putative NADPH:quinone oxidoreductase; YP_296108.1 | 95.88 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 95.82 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 95.81 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 95.8 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 95.79 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 95.76 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 95.73 | |
| 3fbt_A | 282 | Chorismate mutase and shikimate 5-dehydrogenase fu | 95.7 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 95.7 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 95.7 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 95.69 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 95.68 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 95.67 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 95.65 | |
| 5mdh_A | 333 | Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH | 95.61 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 95.56 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 95.5 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 95.43 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 95.42 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 95.42 | |
| 3tum_A | 269 | Shikimate dehydrogenase family protein; rossmann-f | 95.4 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 95.32 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 95.28 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 95.27 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 95.19 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 95.16 | |
| 3rui_A | 340 | Ubiquitin-like modifier-activating enzyme ATG7; au | 95.13 | |
| 1zsy_A | 357 | Mitochondrial 2-enoyl thioester reductase; medium- | 95.03 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 95.0 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 94.98 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 94.87 | |
| 3h5n_A | 353 | MCCB protein; ubiquitin-activating enzyme, microci | 94.86 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 94.8 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 94.75 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 94.71 | |
| 1leh_A | 364 | Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi | 94.69 | |
| 4gsl_A | 615 | Ubiquitin-like modifier-activating enzyme ATG7; ub | 94.64 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 94.63 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 94.48 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 94.39 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 94.34 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 94.32 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 94.31 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 94.26 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 94.18 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 94.13 | |
| 1u8x_X | 472 | Maltose-6'-phosphate glucosidase; structural genom | 94.04 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 94.03 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 93.99 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 93.98 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 93.75 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 93.73 | |
| 1c1d_A | 355 | L-phenylalanine dehydrogenase; amino acid dehydrog | 93.55 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 93.54 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 93.5 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 93.49 | |
| 2d5c_A | 263 | AROE, shikimate 5-dehydrogenase; substrate, dimer, | 93.46 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 93.43 | |
| 3vh1_A | 598 | Ubiquitin-like modifier-activating enzyme ATG7; au | 93.43 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 93.41 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 93.33 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 93.32 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 93.2 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 93.17 | |
| 1obb_A | 480 | Maltase, alpha-glucosidase; glycosidase, sulfinic | 93.1 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 93.0 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 92.99 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 92.95 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 92.95 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 92.95 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 92.88 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 92.83 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 92.54 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 92.51 | |
| 1edz_A | 320 | 5,10-methylenetetrahydrofolate dehydrogenase; nucl | 92.4 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 92.32 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 92.3 | |
| 1npy_A | 271 | Hypothetical shikimate 5-dehydrogenase-like protei | 92.15 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 92.1 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 91.92 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 91.87 | |
| 1tt5_B | 434 | Ubiquitin-activating enzyme E1C isoform 1; cell cy | 91.78 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 91.69 | |
| 4a27_A | 349 | Synaptic vesicle membrane protein VAT-1 homolog-L; | 91.65 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 91.65 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 91.59 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 91.51 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 91.48 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 91.42 |
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-50 Score=399.84 Aligned_cols=251 Identities=24% Similarity=0.320 Sum_probs=224.2
Q ss_pred cCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEcc
Q 010380 172 HCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACD 251 (512)
Q Consensus 172 ~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~D 251 (512)
+++|+||++|||||++|||+++|+.|+++|++|++++|++++++++.+++++ .+.++.+++||
T Consensus 2 y~sL~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~-----------------~g~~~~~~~~D 64 (254)
T 4fn4_A 2 YQSLKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRG-----------------MGKEVLGVKAD 64 (254)
T ss_dssp CGGGTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-----------------TTCCEEEEECC
T ss_pred CCCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHh-----------------cCCcEEEEEcc
Confidence 3578999999999999999999999999999999999999999999999876 46789999999
Q ss_pred CCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeec
Q 010380 252 VCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD 331 (512)
Q Consensus 252 ltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vS 331 (512)
++|+++++++++++.++||+||+||||||+..+..++.++++|+|++++++|+.|+|+++|+++|+|+++ ++|+|||+|
T Consensus 65 vt~~~~v~~~~~~~~~~~G~iDiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~-~~G~IVnis 143 (254)
T 4fn4_A 65 VSKKKDVEEFVRRTFETYSRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQ-GKGVIVNTA 143 (254)
T ss_dssp TTSHHHHHHHHHHHHHHHSCCCEEEECCCCCCTTCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCcEEEEEe
Confidence 9999999999999999999999999999987656789999999999999999999999999999999987 679999999
Q ss_pred CCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhc
Q 010380 332 GAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLV 411 (512)
Q Consensus 332 S~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l 411 (512)
|. ++..+.|+..+|++||+|+.+|+++||.|++++|||||+|+||+|+|||.............. ......++
T Consensus 144 S~-~g~~~~~~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~------~~~~~~~~ 216 (254)
T 4fn4_A 144 SI-AGIRGGFAGAPYTVAKHGLIGLTRSIAAHYGDQGIRAVAVLPGTVKTNIGLGSSKPSELGMRT------LTKLMSLS 216 (254)
T ss_dssp CG-GGTCSSSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSCTTSCSSCCHHHHHH------HHHHHTTC
T ss_pred ch-hhcCCCCCChHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCCCCcccccccCCcHHHHHH------HHhcCCCC
Confidence 98 788889999999999999999999999999999999999999999999975543222111110 11122467
Q ss_pred cccccchhhhhhhhhcCChHHHHHHHHHHhccCccc
Q 010380 412 PRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWF 447 (512)
Q Consensus 412 ~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~ 447 (512)
+|+..|+|+++++.||+|+...+.++..+..||+|.
T Consensus 217 ~R~g~pediA~~v~fLaSd~a~~iTG~~i~VDGG~t 252 (254)
T 4fn4_A 217 SRLAEPEDIANVIVFLASDEASFVNGDAVVVDGGLT 252 (254)
T ss_dssp CCCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred CCCcCHHHHHHHHHHHhCchhcCCcCCEEEeCCCcc
Confidence 999999999999999999999999999999999874
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-50 Score=398.41 Aligned_cols=248 Identities=24% Similarity=0.311 Sum_probs=225.6
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
++++||++|||||++|||+++|+.|+++|++|++++|++++++++.+++.+ .+.++.+++||+
T Consensus 5 f~L~gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~-----------------~g~~~~~~~~Dv 67 (255)
T 4g81_D 5 FDLTGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTR-----------------KGYDAHGVAFDV 67 (255)
T ss_dssp TCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHH-----------------TTCCEEECCCCT
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh-----------------cCCcEEEEEeeC
Confidence 589999999999999999999999999999999999999999999988876 467899999999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|+++++++++++.+++|+||+||||||+.. ..++.++++|+|++++++|+.|+|+++|+++|+|.++.++|+|||+||
T Consensus 68 ~~~~~v~~~~~~~~~~~G~iDiLVNNAG~~~-~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~~G~IVnisS 146 (255)
T 4g81_D 68 TDELAIEAAFSKLDAEGIHVDILINNAGIQY-RKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNSGGKIINIGS 146 (255)
T ss_dssp TCHHHHHHHHHHHHHTTCCCCEEEECCCCCC-CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred CCHHHHHHHHHHHHHHCCCCcEEEECCCCCC-CCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCCCEEEEEee
Confidence 9999999999999999999999999999987 789999999999999999999999999999999987657899999999
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhcc
Q 010380 333 AGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVP 412 (512)
Q Consensus 333 ~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~ 412 (512)
. ++..+.|+..+|++||+|+.+|+++|+.|++++|||||+|+||+|+|||....... +.. ......+.+++
T Consensus 147 ~-~~~~~~~~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~--~~~------~~~~~~~~Pl~ 217 (255)
T 4g81_D 147 L-TSQAARPTVAPYTAAKGGIKMLTCSMAAEWAQFNIQTNAIGPGYILTDMNTALIED--KQF------DSWVKSSTPSQ 217 (255)
T ss_dssp G-GGTSBCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGHHHHTC--HHH------HHHHHHHSTTC
T ss_pred h-hhcCCCCCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCCCchhhcccCC--HHH------HHHHHhCCCCC
Confidence 8 68889999999999999999999999999999999999999999999986432111 111 12234567899
Q ss_pred ccccchhhhhhhhhcCChHHHHHHHHHHhccCccc
Q 010380 413 RIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWF 447 (512)
Q Consensus 413 r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~ 447 (512)
|+..|+|++.++.||+|+...+.++..+..||+|.
T Consensus 218 R~g~pediA~~v~fL~S~~a~~iTG~~i~VDGG~~ 252 (255)
T 4g81_D 218 RWGRPEELIGTAIFLSSKASDYINGQIIYVDGGWL 252 (255)
T ss_dssp SCBCGGGGHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred CCcCHHHHHHHHHHHhCchhCCCcCCEEEECCCeE
Confidence 99999999999999999999999999999999985
|
| >4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-48 Score=383.83 Aligned_cols=243 Identities=18% Similarity=0.240 Sum_probs=213.1
Q ss_pred ccCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEc
Q 010380 171 EHCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIAC 250 (512)
Q Consensus 171 ~~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~ 250 (512)
+.++|+||++|||||++|||+++|+.|+++|++|++++|+.+ +++.+++.+ .+.++.++.|
T Consensus 3 n~f~L~GKvalVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~~--~~~~~~~~~-----------------~g~~~~~~~~ 63 (247)
T 4hp8_A 3 NPFSLEGRKALVTGANTGLGQAIAVGLAAAGAEVVCAARRAP--DETLDIIAK-----------------DGGNASALLI 63 (247)
T ss_dssp CTTCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCC--HHHHHHHHH-----------------TTCCEEEEEC
T ss_pred CCcCCCCCEEEEeCcCCHHHHHHHHHHHHcCCEEEEEeCCcH--HHHHHHHHH-----------------hCCcEEEEEc
Confidence 357899999999999999999999999999999999999864 345555554 4678999999
Q ss_pred cCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEee
Q 010380 251 DVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNM 330 (512)
Q Consensus 251 Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~v 330 (512)
|++|+++++++++ +++||+||||||+.. ..++.++++++|++++++|+.|+|+++|+++|+|++++++|+|||+
T Consensus 64 Dv~d~~~v~~~~~-----~g~iDiLVNNAGi~~-~~~~~~~~~~~w~~~~~vNl~g~f~~~~~~~~~m~~~g~~G~IVni 137 (247)
T 4hp8_A 64 DFADPLAAKDSFT-----DAGFDILVNNAGIIR-RADSVEFSELDWDEVMDVNLKALFFTTQAFAKELLAKGRSGKVVNI 137 (247)
T ss_dssp CTTSTTTTTTSST-----TTCCCEEEECCCCCC-CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred cCCCHHHHHHHHH-----hCCCCEEEECCCCCC-CCCcccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 9999999887763 589999999999987 6899999999999999999999999999999999887568999999
Q ss_pred cCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHh
Q 010380 331 DGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTL 410 (512)
Q Consensus 331 SS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~ 410 (512)
||. ++..+.|+.++|++||+|+.+|+|+||.|++++|||||+|+||+|+|||........ .. ......+.+
T Consensus 138 sS~-~~~~g~~~~~~Y~asKaav~~ltr~lA~Ela~~gIrVNaV~PG~i~T~~~~~~~~~~--~~------~~~~~~~~P 208 (247)
T 4hp8_A 138 ASL-LSFQGGIRVPSYTAAKHGVAGLTKLLANEWAAKGINVNAIAPGYIETNNTEALRADA--AR------NKAILERIP 208 (247)
T ss_dssp CCG-GGTSCCSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHTSH--HH------HHHHHTTCT
T ss_pred ech-hhCCCCCCChHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCCCCcchhhcccCH--HH------HHHHHhCCC
Confidence 998 788899999999999999999999999999999999999999999999974321110 00 112234578
Q ss_pred ccccccchhhhhhhhhcCChHHHHHHHHHHhccCccc
Q 010380 411 VPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWF 447 (512)
Q Consensus 411 l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~ 447 (512)
++|+..|+|++.++.||+|+...+.++..+..||+|.
T Consensus 209 lgR~g~peeiA~~v~fLaSd~a~~iTG~~i~VDGG~~ 245 (247)
T 4hp8_A 209 AGRWGHSEDIAGAAVFLSSAAADYVHGAILNVDGGWL 245 (247)
T ss_dssp TSSCBCTHHHHHHHHHHTSGGGTTCCSCEEEESTTGG
T ss_pred CCCCcCHHHHHHHHHHHhCchhcCCcCCeEEECcccc
Confidence 9999999999999999999999999999999999985
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-48 Score=384.68 Aligned_cols=245 Identities=23% Similarity=0.361 Sum_probs=212.2
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
+|+||++|||||++|||+++|+.|+++|++|++++|+.++++++.+++ +.++.+++||++
T Consensus 26 rL~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~--------------------g~~~~~~~~Dv~ 85 (273)
T 4fgs_A 26 RLNAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEI--------------------GGGAVGIQADSA 85 (273)
T ss_dssp TTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH--------------------CTTCEEEECCTT
T ss_pred hhCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc--------------------CCCeEEEEecCC
Confidence 589999999999999999999999999999999999999888776664 346788999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
|+++++++++++.+++|+||+||||||+.. ..++.++++|+|++++++|+.|+|+++|+++|+|++ +|+||+++|.
T Consensus 86 ~~~~v~~~~~~~~~~~G~iDiLVNNAG~~~-~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~---~G~IInisS~ 161 (273)
T 4fgs_A 86 NLAELDRLYEKVKAEAGRIDVLFVNAGGGS-MLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLAR---GSSVVLTGST 161 (273)
T ss_dssp CHHHHHHHHHHHHHHHSCEEEEEECCCCCC-CCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEE---EEEEEEECCG
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCC-CCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhh---CCeEEEEeeh
Confidence 999999999999999999999999999977 789999999999999999999999999999999965 5899999998
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhccc
Q 010380 334 GSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPR 413 (512)
Q Consensus 334 ~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~r 413 (512)
++..+.|+.++|++||+|+.+|+++|+.|++++|||||+|+||+|+||+............... ..+...+.+++|
T Consensus 162 -~~~~~~~~~~~Y~asKaav~~ltr~lA~Ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~---~~~~~~~~PlgR 237 (273)
T 4fgs_A 162 -AGSTGTPAFSVYAASKAALRSFARNWILDLKDRGIRINTLSPGPTETTGLVELAGKDPVQQQGL---LNALAAQVPMGR 237 (273)
T ss_dssp -GGGSCCTTCHHHHHHHHHHHHHHHHHHHHTTTSCEEEEEEEECSBCC---------CHHHHHHH---HHHHHHHSTTSS
T ss_pred -hhccCCCCchHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCCChhHHHhhccCchhhHHH---HHHHHhcCCCCC
Confidence 6788999999999999999999999999999999999999999999999765432211111111 123456678999
Q ss_pred cccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 414 IRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 414 ~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
+..|+|+++++.||+|+...+.++..+..||++
T Consensus 238 ~g~peeiA~~v~FLaSd~a~~iTG~~i~VDGG~ 270 (273)
T 4fgs_A 238 VGRAEEVAAAALFLASDDSSFVTGAELFVDGGS 270 (273)
T ss_dssp CBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred CcCHHHHHHHHHHHhCchhcCccCCeEeECcCh
Confidence 999999999999999999999999988888876
|
| >4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-47 Score=376.30 Aligned_cols=248 Identities=17% Similarity=0.206 Sum_probs=210.8
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
++++||++|||||++|||+++|+.|+++|++|++++|+.++.+ ..+++.+ .+.++.++.||+
T Consensus 3 ~~L~gKvalVTGas~GIG~aia~~la~~Ga~Vv~~~r~~~~~~-~~~~~~~-----------------~~~~~~~~~~Dv 64 (258)
T 4gkb_A 3 LNLQDKVVIVTGGASGIGGAISMRLAEERAIPVVFARHAPDGA-FLDALAQ-----------------RQPRATYLPVEL 64 (258)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCCHH-HHHHHHH-----------------HCTTCEEEECCT
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCcccHH-HHHHHHh-----------------cCCCEEEEEeec
Confidence 6799999999999999999999999999999999999987754 3444444 346788999999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|+++++++++++.++||+||+||||||+.. ....+.+.|+|++++++|+.|+|+++|+++|+|+++ +|+|||+||
T Consensus 65 ~~~~~v~~~v~~~~~~~G~iDiLVNnAGi~~--~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~--~G~IVnisS 140 (258)
T 4gkb_A 65 QDDAQCRDAVAQTIATFGRLDGLVNNAGVND--GIGLDAGRDAFVASLERNLIHYYAMAHYCVPHLKAT--RGAIVNISS 140 (258)
T ss_dssp TCHHHHHHHHHHHHHHHSCCCEEEECCCCCC--CCCTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEECC
T ss_pred CCHHHHHHHHHHHHHHhCCCCEEEECCCCCC--CCCccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCeEEEEee
Confidence 9999999999999999999999999999865 334588999999999999999999999999999864 599999999
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhc-
Q 010380 333 AGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLV- 411 (512)
Q Consensus 333 ~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l- 411 (512)
. ++..+.|+..+|++||+|+.+|+++|+.|++++|||||+|+||+|+|||............ ....+...+.++
T Consensus 141 ~-~~~~~~~~~~~Y~asKaav~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~----~~~~~~~~~~plg 215 (258)
T 4gkb_A 141 K-TAVTGQGNTSGYCASKGAQLALTREWAVALREHGVRVNAVIPAEVMTPLYRNWIATFEDPE----AKLAEIAAKVPLG 215 (258)
T ss_dssp T-HHHHCCSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCSCC---------------CHHHHHHTTCTTT
T ss_pred h-hhccCCCCchHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCCChhHhhhhhcccChH----HHHHHHHhcCCCC
Confidence 8 6788899999999999999999999999999999999999999999999865322111000 001223344566
Q ss_pred cccccchhhhhhhhhcCChHHHHHHHHHHhccCccc
Q 010380 412 PRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWF 447 (512)
Q Consensus 412 ~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~ 447 (512)
+|+..|+|+++++.||+|+...+.++..+..||+|.
T Consensus 216 ~R~g~peeiA~~v~fLaS~~a~~iTG~~i~VDGG~T 251 (258)
T 4gkb_A 216 RRFTTPDEIADTAVFLLSPRASHTTGEWLFVDGGYT 251 (258)
T ss_dssp TSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTTT
T ss_pred CCCcCHHHHHHHHHHHhCchhcCccCCeEEECCCcc
Confidence 589999999999999999999999999999999984
|
| >4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-46 Score=369.58 Aligned_cols=233 Identities=21% Similarity=0.316 Sum_probs=201.5
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCC
Q 010380 175 AGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCE 254 (512)
Q Consensus 175 l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd 254 (512)
++||++|||||++|||+++|+.|+++|++|++++|+.+.+++. .+.++..+.||++|
T Consensus 9 f~GK~alVTGas~GIG~aia~~la~~Ga~Vv~~~~~~~~~~~~-----------------------~~~~~~~~~~Dv~~ 65 (242)
T 4b79_A 9 YAGQQVLVTGGSSGIGAAIAMQFAELGAEVVALGLDADGVHAP-----------------------RHPRIRREELDITD 65 (242)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTSTTSC-----------------------CCTTEEEEECCTTC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHhhh-----------------------hcCCeEEEEecCCC
Confidence 5899999999999999999999999999999999998765321 24578899999999
Q ss_pred hhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCC
Q 010380 255 PADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAG 334 (512)
Q Consensus 255 ~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~ 334 (512)
+++++++++ ++|+||+||||||+. .++.+++.++|++++++|+.|+|+++|+++|+|+++ +|+|||+||.
T Consensus 66 ~~~v~~~~~----~~g~iDiLVNNAGi~---~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~--~G~IVnisS~- 135 (242)
T 4b79_A 66 SQRLQRLFE----ALPRLDVLVNNAGIS---RDREEYDLATFERVLRLNLSAAMLASQLARPLLAQR--GGSILNIASM- 135 (242)
T ss_dssp HHHHHHHHH----HCSCCSEEEECCCCC---CGGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--CEEEEEECCG-
T ss_pred HHHHHHHHH----hcCCCCEEEECCCCC---CCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc--CCeEEEEeec-
Confidence 999887764 679999999999984 467899999999999999999999999999999864 6999999998
Q ss_pred CCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhcccc
Q 010380 335 SGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPRI 414 (512)
Q Consensus 335 a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~r~ 414 (512)
++..+.|+.++|++||+|+.+|+++|+.|++++|||||+|+||+|+|||........ +. ..+...+.+++|+
T Consensus 136 ~~~~~~~~~~~Y~asKaav~~ltr~lA~Ela~~gIrVNaV~PG~i~T~m~~~~~~~~--~~------~~~~~~~~PlgR~ 207 (242)
T 4b79_A 136 YSTFGSADRPAYSASKGAIVQLTRSLACEYAAERIRVNAIAPGWIDTPLGAGLKADV--EA------TRRIMQRTPLARW 207 (242)
T ss_dssp GGTSCCSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCC-----CCCH--HH------HHHHHHTCTTCSC
T ss_pred cccCCCCCCHHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCCCChhhhcccCCH--HH------HHHHHhcCCCCCC
Confidence 788899999999999999999999999999999999999999999999975432211 11 1223456789999
Q ss_pred ccchhhhhhhhhcCChHHHHHHHHHHhccCcccc
Q 010380 415 RVVKGSGKAINYLTPPRILLALVTAWLRRGRWFD 448 (512)
Q Consensus 415 ~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~~ 448 (512)
..|+|++.++.||+|+...+.++..+..||+|+.
T Consensus 208 g~peeiA~~v~fLaSd~a~~iTG~~l~VDGG~la 241 (242)
T 4b79_A 208 GEAPEVASAAAFLCGPGASFVTGAVLAVDGGYLC 241 (242)
T ss_dssp BCHHHHHHHHHHHTSGGGTTCCSCEEEESTTGGG
T ss_pred cCHHHHHHHHHHHhCchhcCccCceEEECccHhh
Confidence 9999999999999999999999999999999863
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-45 Score=361.61 Aligned_cols=229 Identities=21% Similarity=0.275 Sum_probs=204.6
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChh
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPA 256 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~ 256 (512)
+|+||||||++|||+++|+.|+++|++|++++|++++++++.+ .+.++.+++||++|++
T Consensus 2 nK~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~---------------------~~~~~~~~~~Dv~~~~ 60 (247)
T 3ged_A 2 NRGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAK---------------------ERPNLFYFHGDVADPL 60 (247)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHT---------------------TCTTEEEEECCTTSHH
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH---------------------hcCCEEEEEecCCCHH
Confidence 4899999999999999999999999999999999877654332 2356888999999999
Q ss_pred hHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCC
Q 010380 257 DVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSG 336 (512)
Q Consensus 257 sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~ 336 (512)
+++++++++.+++|+||+||||||+.. ..++.+++.|+|++++++|+.|+|+++|+++|+|+++ +|+|||+||. ++
T Consensus 61 ~v~~~v~~~~~~~g~iDiLVNNAG~~~-~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~--~G~IInisS~-~~ 136 (247)
T 3ged_A 61 TLKKFVEYAMEKLQRIDVLVNNACRGS-KGILSSLLYEEFDYILSVGLKAPYELSRLCRDELIKN--KGRIINIAST-RA 136 (247)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCCCC-CCGGGTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--TCEEEEECCG-GG
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCCC-CCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhc--CCcEEEEeec-cc
Confidence 999999999999999999999999987 7899999999999999999999999999999999975 5999999998 68
Q ss_pred CCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhcccccc
Q 010380 337 GSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPRIRV 416 (512)
Q Consensus 337 ~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~r~~~ 416 (512)
..+.|+..+|++||+|+.+|+++||.|+++ |||||+|+||+|+|++..+. ..+..++.+++|+..
T Consensus 137 ~~~~~~~~~Y~asKaal~~ltk~lA~ela~-~IrVN~I~PG~i~t~~~~~~--------------~~~~~~~~Pl~R~g~ 201 (247)
T 3ged_A 137 FQSEPDSEAYASAKGGIVALTHALAMSLGP-DVLVNCIAPGWINVTEQQEF--------------TQEDCAAIPAGKVGT 201 (247)
T ss_dssp TSCCTTCHHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEEECSBCCCC---C--------------CHHHHHTSTTSSCBC
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHCC-CCEEEEEecCcCCCCCcHHH--------------HHHHHhcCCCCCCcC
Confidence 889999999999999999999999999997 99999999999999985321 234456678999999
Q ss_pred chhhhhhhhhcCChHHHHHHHHHHhccCccc
Q 010380 417 VKGSGKAINYLTPPRILLALVTAWLRRGRWF 447 (512)
Q Consensus 417 ~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~ 447 (512)
|+|+++++.||+++. +.+++.+..||++.
T Consensus 202 pediA~~v~fL~s~~--~iTG~~i~VDGG~s 230 (247)
T 3ged_A 202 PKDISNMVLFLCQQD--FITGETIIVDGGMS 230 (247)
T ss_dssp HHHHHHHHHHHHHCS--SCCSCEEEESTTGG
T ss_pred HHHHHHHHHHHHhCC--CCCCCeEEECcCHH
Confidence 999999999999853 67888888888874
|
| >4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-46 Score=369.61 Aligned_cols=249 Identities=17% Similarity=0.192 Sum_probs=208.1
Q ss_pred ccCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEc
Q 010380 171 EHCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIAC 250 (512)
Q Consensus 171 ~~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~ 250 (512)
+.++|+||++|||||++|||+++|+.|+++|++|++++|+.++. ..+..+++|
T Consensus 5 dl~~L~GK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~---------------------------~~~~~~~~~ 57 (261)
T 4h15_A 5 EFLNLRGKRALITAGTKGAGAATVSLFLELGAQVLTTARARPEG---------------------------LPEELFVEA 57 (261)
T ss_dssp CCCCCTTCEEEESCCSSHHHHHHHHHHHHTTCEEEEEESSCCTT---------------------------SCTTTEEEC
T ss_pred hccCCCCCEEEEeccCcHHHHHHHHHHHHcCCEEEEEECCchhC---------------------------CCcEEEEEc
Confidence 34789999999999999999999999999999999999985421 122346899
Q ss_pred cCCChhhHHHHHHHHHHHcCCCcccccccccCCC-CCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEe
Q 010380 251 DVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKG-FKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFN 329 (512)
Q Consensus 251 Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~-~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~ 329 (512)
|++|+++++++++++.+++|+||+||||||+... ..++.++++|+|++++++|+.|+++++|+++|+|+++ ++|+||+
T Consensus 58 Dv~~~~~v~~~~~~~~~~~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~-~~G~Iv~ 136 (261)
T 4h15_A 58 DLTTKEGCAIVAEATRQRLGGVDVIVHMLGGSSAAGGGFSALSDDDWYNELSLNLFAAVRLDRQLVPDMVAR-GSGVVVH 136 (261)
T ss_dssp CTTSHHHHHHHHHHHHHHTSSCSEEEECCCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCccCCCCcccCCHHHHHHHHHHHhHHHHHHHHhhchhhhhc-CCceEEE
Confidence 9999999999999999999999999999998642 3578999999999999999999999999999999987 6799999
Q ss_pred ecCCCCCCCCCC-CcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcC----CHH
Q 010380 330 MDGAGSGGSSTP-LTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICE----LPE 404 (512)
Q Consensus 330 vSS~~a~~~~~p-~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~----~pe 404 (512)
+||. ++..+.| +...|++||+|+.+|+++|+.|++++|||||+|+||+|+|||.........+........ ..+
T Consensus 137 isS~-~~~~~~~~~~~~Y~asKaal~~lt~~lA~Ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (261)
T 4h15_A 137 VTSI-QRVLPLPESTTAYAAAKAALSTYSKAMSKEVSPKGVRVVRVSPGWIETEASVRLAERLAKQAGTDLEGGKKIIMD 215 (261)
T ss_dssp ECCG-GGTSCCTTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred EEeh-hhccCCCCccHHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEeCCCcCCcchhhhhHHHHHhhccchhhHHHHHHH
Confidence 9998 5666665 678999999999999999999999999999999999999998643221111110000000 011
Q ss_pred HHHHHhccccccchhhhhhhhhcCChHHHHHHHHHHhccCcccc
Q 010380 405 TVARTLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWFD 448 (512)
Q Consensus 405 ~vA~~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~~ 448 (512)
..++.+++|+..|+|+++++.||+|++..+.++..+..||+|..
T Consensus 216 ~~~~~PlgR~g~peevA~~v~fLaS~~a~~itG~~i~VDGG~v~ 259 (261)
T 4h15_A 216 GLGGIPLGRPAKPEEVANLIAFLASDRAASITGAEYTIDGGTVP 259 (261)
T ss_dssp HTTCCTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTCSC
T ss_pred HhcCCCCCCCcCHHHHHHHHHHHhCchhcCccCcEEEECCcCcc
Confidence 22346789999999999999999999999999999999998853
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-45 Score=359.57 Aligned_cols=247 Identities=17% Similarity=0.092 Sum_probs=216.9
Q ss_pred CCCCCCEEEEECCCC--hHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEc
Q 010380 173 CKAGPRNVVITGSTR--GLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIAC 250 (512)
Q Consensus 173 ~~l~gk~vLVTGass--GIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~ 250 (512)
++++||++|||||+| |||+++|+.|+++|++|++++|+++.++++.+++++. .+.++.+++|
T Consensus 2 ~~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~----------------~~~~~~~~~~ 65 (256)
T 4fs3_A 2 LNLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQL----------------NQPEAHLYQI 65 (256)
T ss_dssp CCCTTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGGG----------------TCSSCEEEEC
T ss_pred cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc----------------CCCcEEEEEc
Confidence 578999999999875 9999999999999999999999999888877776542 3457889999
Q ss_pred cCCChhhHHHHHHHHHHHcCCCcccccccccCCC---CCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeE
Q 010380 251 DVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKG---FKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHI 327 (512)
Q Consensus 251 Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~---~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~I 327 (512)
|++|+++++++++++.+++|+||+||||||+... ..++.+.+.++|+..+++|+.+++.+++.+.|+|+ ++|+|
T Consensus 66 Dv~~~~~v~~~~~~~~~~~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~---~~G~I 142 (256)
T 4fs3_A 66 DVQSDEEVINGFEQIGKDVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMP---EGGSI 142 (256)
T ss_dssp CTTCHHHHHHHHHHHHHHHCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCT---TCEEE
T ss_pred cCCCHHHHHHHHHHHHHHhCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCCEE
Confidence 9999999999999999999999999999998641 24567889999999999999999999999998775 36899
Q ss_pred EeecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHH
Q 010380 328 FNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVA 407 (512)
Q Consensus 328 V~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA 407 (512)
|++||. ++..+.|+...|++||+|+.+|+++|+.|++++|||||+|+||+|+|+|........ .. ..+...
T Consensus 143 VnisS~-~~~~~~~~~~~Y~asKaal~~ltr~lA~Ela~~gIrVN~V~PG~i~T~~~~~~~~~~--~~------~~~~~~ 213 (256)
T 4fs3_A 143 VATTYL-GGEFAVQNYNVMGVAKASLEANVKYLALDLGPDNIRVNAISAGPIRTLSAKGVGGFN--TI------LKEIKE 213 (256)
T ss_dssp EEEECG-GGTSCCTTTHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSGGGTTCTTHH--HH------HHHHHH
T ss_pred EEEecc-ccccCcccchhhHHHHHHHHHHHHHHHHHhCccCeEEEEEecCCCCChhhhhccCCH--HH------HHHHHh
Confidence 999998 788899999999999999999999999999999999999999999999975533211 11 123456
Q ss_pred HHhccccccchhhhhhhhhcCChHHHHHHHHHHhccCccc
Q 010380 408 RTLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWF 447 (512)
Q Consensus 408 ~~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~ 447 (512)
+.+++|+..|+|+++++.||+|+...+.++..+..||+|.
T Consensus 214 ~~Pl~R~g~peevA~~v~fL~Sd~a~~iTG~~i~VDGG~~ 253 (256)
T 4fs3_A 214 RAPLKRNVDQVEVGKTAAYLLSDLSSGVTGENIHVDSGFH 253 (256)
T ss_dssp HSTTSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred cCCCCCCcCHHHHHHHHHHHhCchhcCccCCEEEECcCHH
Confidence 6789999999999999999999999999999999999884
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-42 Score=343.48 Aligned_cols=252 Identities=22% Similarity=0.324 Sum_probs=219.7
Q ss_pred cccCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEE
Q 010380 170 EEHCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIA 249 (512)
Q Consensus 170 ~~~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~ 249 (512)
...+++++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+. .+.++.++.
T Consensus 13 ~~~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~----------------~~~~~~~~~ 76 (266)
T 4egf_A 13 AGVLRLDGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQ----------------FGTDVHTVA 76 (266)
T ss_dssp CGGGCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH----------------HCCCEEEEE
T ss_pred ccccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh----------------cCCcEEEEE
Confidence 3346789999999999999999999999999999999999999998888887653 246799999
Q ss_pred ccCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEe
Q 010380 250 CDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFN 329 (512)
Q Consensus 250 ~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~ 329 (512)
||++|+++++++++++.+++|++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|.|++++.+|+||+
T Consensus 77 ~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~-~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~ 155 (266)
T 4egf_A 77 IDLAEPDAPAELARRAAEAFGGLDVLVNNAGISH-PQPVVDTDPQLFDATIAVNLRAPALLASAVGKAMVAAGEGGAIIT 155 (266)
T ss_dssp CCTTSTTHHHHHHHHHHHHHTSCSEEEEECCCCC-CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEE
T ss_pred ecCCCHHHHHHHHHHHHHHcCCCCEEEECCCcCC-CCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 9999999999999999999999999999999987 678899999999999999999999999999999998755789999
Q ss_pred ecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHH
Q 010380 330 MDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVART 409 (512)
Q Consensus 330 vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~ 409 (512)
+||. ++..+.++...|++||+|+++|+++|+.|++++||+||+|+||+|+|++........ .. ........
T Consensus 156 isS~-~~~~~~~~~~~Y~asK~a~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~--~~------~~~~~~~~ 226 (266)
T 4egf_A 156 VASA-AALAPLPDHYAYCTSKAGLVMATKVLARELGPHGIRANSVCPTVVLTEMGQRVWGDE--AK------SAPMIARI 226 (266)
T ss_dssp ECCG-GGTSCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBCSHHHHHHTCSH--HH------HHHHHTTC
T ss_pred Ecch-hhccCCCCChHHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeCCCcCchhhhhccCh--HH------HHHHHhcC
Confidence 9998 678888999999999999999999999999999999999999999999864221100 00 11223446
Q ss_pred hccccccchhhhhhhhhcCChHHHHHHHHHHhccCccc
Q 010380 410 LVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWF 447 (512)
Q Consensus 410 ~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~ 447 (512)
+++++..|+|+++++.||+++...+.++..+..||++.
T Consensus 227 p~~r~~~p~dva~~v~~L~s~~~~~itG~~i~vdGG~~ 264 (266)
T 4egf_A 227 PLGRFAVPHEVSDAVVWLASDAASMINGVDIPVDGGYT 264 (266)
T ss_dssp TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred CCCCCcCHHHHHHHHHHHhCchhcCccCcEEEECCCcc
Confidence 77899999999999999999988777888787777763
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-42 Score=339.21 Aligned_cols=248 Identities=23% Similarity=0.349 Sum_probs=216.4
Q ss_pred cccCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEE
Q 010380 170 EEHCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIA 249 (512)
Q Consensus 170 ~~~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~ 249 (512)
...+++++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+ .+.++.++.
T Consensus 5 ~~~~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-----------------~~~~~~~~~ 67 (256)
T 3gaf_A 5 ESPFHLNDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQ-----------------AGGKAIGLE 67 (256)
T ss_dssp -CTTCCTTCEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHH-----------------TTCCEEEEE
T ss_pred cCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-----------------cCCcEEEEE
Confidence 345778999999999999999999999999999999999999998888888765 456899999
Q ss_pred ccCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEe
Q 010380 250 CDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFN 329 (512)
Q Consensus 250 ~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~ 329 (512)
+|++|+++++++++++.+++|++|+||||||+.. ..++ +.+.++|++++++|+.|+++++++++|+|+++ +.|+||+
T Consensus 68 ~Dv~d~~~v~~~~~~~~~~~g~id~lv~nAg~~~-~~~~-~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~ 144 (256)
T 3gaf_A 68 CNVTDEQHREAVIKAALDQFGKITVLVNNAGGGG-PKPF-DMPMSDFEWAFKLNLFSLFRLSQLAAPHMQKA-GGGAILN 144 (256)
T ss_dssp CCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCC-CCCT-TCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCC-CCCC-CCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEE
Confidence 9999999999999999999999999999999976 4666 89999999999999999999999999999987 5789999
Q ss_pred ecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHH
Q 010380 330 MDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVART 409 (512)
Q Consensus 330 vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~ 409 (512)
+||. ++..+.++...|++||+|+++|+++++.|++++||+||+|+||+|+|++....... ... .......
T Consensus 145 isS~-~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~---~~~------~~~~~~~ 214 (256)
T 3gaf_A 145 ISSM-AGENTNVRMASYGSSKAAVNHLTRNIAFDVGPMGIRVNAIAPGAIKTDALATVLTP---EIE------RAMLKHT 214 (256)
T ss_dssp ECCG-GGTCCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHHHCCH---HHH------HHHHTTC
T ss_pred EcCH-HHcCCCCCchHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEEccccCchhhhccCH---HHH------HHHHhcC
Confidence 9998 67888899999999999999999999999999999999999999999986432110 000 1122345
Q ss_pred hccccccchhhhhhhhhcCChHHHHHHHHHHhccCccc
Q 010380 410 LVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWF 447 (512)
Q Consensus 410 ~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~ 447 (512)
+++++..|+|+++++.||+++...+.++..+..||++.
T Consensus 215 p~~r~~~~~dva~~~~~L~s~~~~~itG~~i~vdgG~~ 252 (256)
T 3gaf_A 215 PLGRLGEAQDIANAALFLCSPAAAWISGQVLTVSGGGV 252 (256)
T ss_dssp TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTSC
T ss_pred CCCCCCCHHHHHHHHHHHcCCcccCccCCEEEECCCcc
Confidence 67889999999999999999988777777777777763
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-42 Score=340.94 Aligned_cols=256 Identities=18% Similarity=0.253 Sum_probs=218.5
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
+++++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+.. .+.++.++.||+
T Consensus 4 ~~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~---------------~~~~~~~~~~Dv 68 (265)
T 3lf2_A 4 YDLSEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRF---------------PGARLFASVCDV 68 (265)
T ss_dssp CCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHS---------------TTCCEEEEECCT
T ss_pred cCcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhc---------------CCceEEEEeCCC
Confidence 57899999999999999999999999999999999999999988888876531 234589999999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|+++++++++++.+++|++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|+|+++ +.|+||++||
T Consensus 69 ~~~~~v~~~~~~~~~~~g~id~lvnnAg~~~-~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv~isS 146 (265)
T 3lf2_A 69 LDALQVRAFAEACERTLGCASILVNNAGQGR-VSTFAETTDEAWSEELQLKFFSVIHPVRAFLPQLESR-ADAAIVCVNS 146 (265)
T ss_dssp TCHHHHHHHHHHHHHHHCSCSEEEECCCCCC-CBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-TTEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCCCC-CCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CCeEEEEECC
Confidence 9999999999999999999999999999976 6889999999999999999999999999999999876 5789999999
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHH---H
Q 010380 333 AGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVAR---T 409 (512)
Q Consensus 333 ~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~---~ 409 (512)
. ++..+.++...|++||+|+++|+++|+.|++++||+||+|+||+|+|++.............. .....+...+ .
T Consensus 147 ~-~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 224 (265)
T 3lf2_A 147 L-LASQPEPHMVATSAARAGVKNLVRSMAFEFAPKGVRVNGILIGLVESGQWRRRFEAREERELD-WAQWTAQLARNKQI 224 (265)
T ss_dssp G-GGTSCCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHTC------C-HHHHHHHHHHHTTC
T ss_pred c-ccCCCCCCchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCcCchhhhhhhhhhhhccC-HHHHHHHHhhccCC
Confidence 8 678888999999999999999999999999999999999999999999864321100000000 0000122233 6
Q ss_pred hccccccchhhhhhhhhcCChHHHHHHHHHHhccCccc
Q 010380 410 LVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWF 447 (512)
Q Consensus 410 ~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~ 447 (512)
+++|+..|+|+++++.||+++...+.++..+..||++.
T Consensus 225 p~~r~~~pedvA~~v~fL~s~~~~~itG~~i~vdGG~~ 262 (265)
T 3lf2_A 225 PLGRLGKPIEAARAILFLASPLSAYTTGSHIDVSGGLS 262 (265)
T ss_dssp TTCSCBCHHHHHHHHHHHHSGGGTTCCSEEEEESSSCC
T ss_pred CcCCCcCHHHHHHHHHHHhCchhcCcCCCEEEECCCCc
Confidence 78899999999999999999998888888888888764
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-42 Score=336.37 Aligned_cols=242 Identities=24% Similarity=0.370 Sum_probs=212.5
Q ss_pred cCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEcc
Q 010380 172 HCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACD 251 (512)
Q Consensus 172 ~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~D 251 (512)
.+++++|++|||||++|||+++|++|+++|++|++++|++++++++.+++. .++.++.+|
T Consensus 4 ~~~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~--------------------~~~~~~~~D 63 (248)
T 3op4_A 4 FMNLEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLG--------------------DNGKGMALN 63 (248)
T ss_dssp TTCCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHG--------------------GGEEEEECC
T ss_pred ccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--------------------ccceEEEEe
Confidence 357899999999999999999999999999999999999988877666542 246789999
Q ss_pred CCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeec
Q 010380 252 VCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD 331 (512)
Q Consensus 252 ltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vS 331 (512)
++|+++++++++++.+++|++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|+|+++ +.|+||++|
T Consensus 64 v~d~~~v~~~~~~~~~~~g~iD~lv~nAg~~~-~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~-~~g~iv~is 141 (248)
T 3op4_A 64 VTNPESIEAVLKAITDEFGGVDILVNNAGITR-DNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKK-RQGRIINVG 141 (248)
T ss_dssp TTCHHHHHHHHHHHHHHHCCCSEEEECCCCCC-CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCCCCC-CCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCCEEEEEc
Confidence 99999999999999999999999999999987 6788999999999999999999999999999999876 578999999
Q ss_pred CCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhc
Q 010380 332 GAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLV 411 (512)
Q Consensus 332 S~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l 411 (512)
|. ++..+.++...|++||+|+++|+++++.|++++||+||+|+||+|+|++........ ........++
T Consensus 142 S~-~~~~~~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~----------~~~~~~~~p~ 210 (248)
T 3op4_A 142 SV-VGTMGNAGQANYAAAKAGVIGFTKSMAREVASRGVTVNTVAPGFIETDMTKALNDEQ----------RTATLAQVPA 210 (248)
T ss_dssp CH-HHHHCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSTTTTTSCHHH----------HHHHHHTCTT
T ss_pred ch-hhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEeeCCCCCchhhhcCHHH----------HHHHHhcCCC
Confidence 97 677788999999999999999999999999999999999999999999975432111 1122344567
Q ss_pred cccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 412 PRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 412 ~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
+++..|+|+++++.||+++...+.++..+..||++
T Consensus 211 ~r~~~p~dva~~v~~L~s~~~~~itG~~i~vdgG~ 245 (248)
T 3op4_A 211 GRLGDPREIASAVAFLASPEAAYITGETLHVNGGM 245 (248)
T ss_dssp CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTS
T ss_pred CCCcCHHHHHHHHHHHcCCccCCccCcEEEECCCe
Confidence 88999999999999999998877777777777765
|
| >4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-41 Score=340.23 Aligned_cols=248 Identities=23% Similarity=0.304 Sum_probs=218.6
Q ss_pred ccCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEc
Q 010380 171 EHCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIAC 250 (512)
Q Consensus 171 ~~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~ 250 (512)
..++++||++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+ .+.++.++.+
T Consensus 20 ~~~~l~gk~~lVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~-----------------~~~~~~~~~~ 82 (271)
T 4ibo_A 20 IIFDLGGRTALVTGSSRGLGRAMAEGLAVAGARILINGTDPSRVAQTVQEFRN-----------------VGHDAEAVAF 82 (271)
T ss_dssp GGGCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHH-----------------TTCCEEECCC
T ss_pred cccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-----------------cCCceEEEEc
Confidence 34678999999999999999999999999999999999999999888888865 4567899999
Q ss_pred cCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEee
Q 010380 251 DVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNM 330 (512)
Q Consensus 251 Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~v 330 (512)
|++|+++++++++++.+++|++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|.|+++ +.|+||++
T Consensus 83 Dv~d~~~v~~~~~~~~~~~g~iD~lv~nAg~~~-~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iV~i 160 (271)
T 4ibo_A 83 DVTSESEIIEAFARLDEQGIDVDILVNNAGIQF-RKPMIELETADWQRVIDTNLTSAFMIGREAAKRMIPR-GYGKIVNI 160 (271)
T ss_dssp CTTCHHHHHHHHHHHHHHTCCCCEEEECCCCCC-CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCC-CCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEE
Confidence 999999999999999999999999999999987 6788999999999999999999999999999999886 56899999
Q ss_pred cCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHh
Q 010380 331 DGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTL 410 (512)
Q Consensus 331 SS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~ 410 (512)
||. ++..+.++...|++||+|+++|+++|+.|++++||+||+|+||+|+|+|...... .... ........+
T Consensus 161 sS~-~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~--~~~~------~~~~~~~~p 231 (271)
T 4ibo_A 161 GSL-TSELARATVAPYTVAKGGIKMLTRAMAAEWAQYGIQANAIGPGYMLTDMNQALID--NPEF------DAWVKARTP 231 (271)
T ss_dssp CCG-GGTSBCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHH--CHHH------HHHHHHHST
T ss_pred ccH-HhCCCCCCchhHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeccEeCcchhhccc--CHHH------HHHHHhcCC
Confidence 998 6788889999999999999999999999999999999999999999998632110 0000 122344567
Q ss_pred ccccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 411 VPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 411 l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
++++..|+|++.++.||+++...+.++..+..||++
T Consensus 232 ~~r~~~pedva~~v~~L~s~~~~~itG~~i~vdGG~ 267 (271)
T 4ibo_A 232 AKRWGKPQELVGTAVFLSASASDYVNGQIIYVDGGM 267 (271)
T ss_dssp TCSCBCGGGGHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred CCCCcCHHHHHHHHHHHhCccccCCCCcEEEECCCe
Confidence 889999999999999999998877777777777765
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-41 Score=341.56 Aligned_cols=253 Identities=20% Similarity=0.270 Sum_probs=212.0
Q ss_pred cCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEcc
Q 010380 172 HCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACD 251 (512)
Q Consensus 172 ~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~D 251 (512)
.+++++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+ .+.++.++.+|
T Consensus 23 m~~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~-----------------~~~~~~~~~~D 85 (283)
T 3v8b_A 23 MMNQPSPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEIVG-----------------AGGQAIALEAD 85 (283)
T ss_dssp ----CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHTT-----------------TTCCEEEEECC
T ss_pred hcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-----------------cCCcEEEEEcc
Confidence 4568899999999999999999999999999999999999988888777644 35688999999
Q ss_pred CCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeec
Q 010380 252 VCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD 331 (512)
Q Consensus 252 ltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vS 331 (512)
++|+++++++++++.+++|++|+||||||+.....++.+.+.++|++++++|+.|+++++++++|+|+++ +.|+||++|
T Consensus 86 v~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~Iv~is 164 (283)
T 3v8b_A 86 VSDELQMRNAVRDLVLKFGHLDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFLTLHLTVPYLKQR-GGGAIVVVS 164 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCBCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCceEEEEc
Confidence 9999999999999999999999999999987545789999999999999999999999999999999886 578999999
Q ss_pred CCCCCCC--CCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHH
Q 010380 332 GAGSGGS--STPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVART 409 (512)
Q Consensus 332 S~~a~~~--~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~ 409 (512)
|. ++.. +.++...|++||+|+++|+++|+.|++++||+||+|+||+|+|+|............ ..... ......
T Consensus 165 S~-~~~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~-~~~~~--~~~~~~ 240 (283)
T 3v8b_A 165 SI-NGTRTFTTPGATAYTATKAAQVAIVQQLALELGKHHIRVNAVCPGAIETNISDNTKLRHEEET-AIPVE--WPKGQV 240 (283)
T ss_dssp CS-BTTTBCCSTTCHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEEECSBSSCTTCCTTBCCHHHH-SCCCB--CTTCSC
T ss_pred Ch-hhccCCCCCCchHHHHHHHHHHHHHHHHHHHhCccCcEEEEEEeCCCcCCcccccccccchhh-hhhhh--hhhhcC
Confidence 97 5555 678899999999999999999999999999999999999999999754321111100 00000 001123
Q ss_pred hc--cccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 410 LV--PRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 410 ~l--~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
++ +++..|+|+++++.||+++...+.++..+..||++
T Consensus 241 p~~~~r~~~pedvA~~v~fL~s~~a~~itG~~i~vdGG~ 279 (283)
T 3v8b_A 241 PITDGQPGRSEDVAELIRFLVSERARHVTGSPVWIDGGQ 279 (283)
T ss_dssp GGGTTCCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTH
T ss_pred ccccCCCCCHHHHHHHHHHHcCccccCCcCCEEEECcCc
Confidence 44 78899999999999999999877777777777765
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-41 Score=336.66 Aligned_cols=247 Identities=24% Similarity=0.331 Sum_probs=216.0
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
+++++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+. .+.++.++.+|+
T Consensus 6 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~----------------~~~~~~~~~~Dv 69 (262)
T 3pk0_A 6 FDLQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQL----------------GSGKVIGVQTDV 69 (262)
T ss_dssp TCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT----------------SSSCEEEEECCT
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhh----------------CCCcEEEEEcCC
Confidence 5689999999999999999999999999999999999999988888877541 225789999999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|+++++++++++.+++|++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|+|+++ +.|+||++||
T Consensus 70 ~~~~~v~~~~~~~~~~~g~id~lvnnAg~~~-~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~-~~g~iv~isS 147 (262)
T 3pk0_A 70 SDRAQCDALAGRAVEEFGGIDVVCANAGVFP-DAPLATMTPEQLNGIFAVNVNGTFYAVQACLDALIAS-GSGRVVLTSS 147 (262)
T ss_dssp TSHHHHHHHHHHHHHHHSCCSEEEECCCCCC-CCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-SSCEEEEECC
T ss_pred CCHHHHHHHHHHHHHHhCCCCEEEECCCCCC-CCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCcEEEEEec
Confidence 9999999999999999999999999999987 6889999999999999999999999999999999886 5789999999
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhcc
Q 010380 333 AGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVP 412 (512)
Q Consensus 333 ~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~ 412 (512)
..+...+.++...|++||+|+++|+++++.|++++||+||+|+||+|+|++....... .. .......+++
T Consensus 148 ~~~~~~~~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~----~~------~~~~~~~p~~ 217 (262)
T 3pk0_A 148 ITGPITGYPGWSHYGATKAAQLGFMRTAAIELAPHKITVNAIMPGNIMTEGLLENGEE----YI------ASMARSIPAG 217 (262)
T ss_dssp SBTTTBCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHTTCHH----HH------HHHHTTSTTS
T ss_pred hhhccCCCCCChhhHHHHHHHHHHHHHHHHHHHhhCcEEEEEEeCcCcCccccccCHH----HH------HHHHhcCCCC
Confidence 8333477889999999999999999999999999999999999999999986432211 00 1122345678
Q ss_pred ccccchhhhhhhhhcCChHHHHHHHHHHhccCccc
Q 010380 413 RIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWF 447 (512)
Q Consensus 413 r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~ 447 (512)
++..|+|+++++.||+++...+.++..+..||++.
T Consensus 218 r~~~p~dva~~v~~L~s~~~~~itG~~i~vdGG~~ 252 (262)
T 3pk0_A 218 ALGTPEDIGHLAAFLATKEAGYITGQAIAVDGGQV 252 (262)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTTT
T ss_pred CCcCHHHHHHHHHHHhCccccCCcCCEEEECCCee
Confidence 89999999999999999998888888888888764
|
| >3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-41 Score=334.84 Aligned_cols=246 Identities=22% Similarity=0.346 Sum_probs=216.5
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEE-EcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 175 AGPRNVVITGSTRGLGKALAREFLLSGDRVVVA-SRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 175 l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~-~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
.++|++|||||++|||+++|++|+++|++|+++ +|+.+.++++.+++.+ .+.++.++.+|++
T Consensus 2 ~~~k~vlVTGas~gIG~aia~~l~~~G~~vv~~~~r~~~~~~~~~~~~~~-----------------~~~~~~~~~~Dv~ 64 (258)
T 3oid_A 2 EQNKCALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIEK-----------------LGVKVLVVKANVG 64 (258)
T ss_dssp -CCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHT-----------------TTCCEEEEECCTT
T ss_pred CCCCEEEEecCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHh-----------------cCCcEEEEEcCCC
Confidence 368999999999999999999999999999997 8998888887777754 3568999999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
|+++++++++++.+++|+||+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|+|+++ +.|+||++||.
T Consensus 65 ~~~~v~~~~~~~~~~~g~id~lv~nAg~~~-~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~-~~g~iv~isS~ 142 (258)
T 3oid_A 65 QPAKIKEMFQQIDETFGRLDVFVNNAASGV-LRPVMELEETHWDWTMNINAKALLFCAQEAAKLMEKN-GGGHIVSISSL 142 (258)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCCC-CSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTT-TCEEEEEEEEG
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCC-CCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEECch
Confidence 999999999999999999999999999876 6789999999999999999999999999999999987 57899999998
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhccc
Q 010380 334 GSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPR 413 (512)
Q Consensus 334 ~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~r 413 (512)
++..+.++...|++||+|+++|+++|+.|++++||+||+|+||+|+|+|........ .. ........++++
T Consensus 143 -~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~--~~------~~~~~~~~p~~r 213 (258)
T 3oid_A 143 -GSIRYLENYTTVGVSKAALEALTRYLAVELSPKQIIVNAVSGGAIDTDALKHFPNRE--DL------LEDARQNTPAGR 213 (258)
T ss_dssp -GGTSBCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECCBCSGGGGGCTTHH--HH------HHHHHHHCTTSS
T ss_pred -hhCCCCCCcHHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcChhhhhcccCH--HH------HHHHHhcCCCCC
Confidence 677888999999999999999999999999999999999999999999875432111 11 122344567889
Q ss_pred cccchhhhhhhhhcCChHHHHHHHHHHhccCcccc
Q 010380 414 IRVVKGSGKAINYLTPPRILLALVTAWLRRGRWFD 448 (512)
Q Consensus 414 ~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~~ 448 (512)
+..|+|+++++.||+++...+.++..+..||++..
T Consensus 214 ~~~~~dva~~v~~L~s~~~~~itG~~i~vdGG~~~ 248 (258)
T 3oid_A 214 MVEIKDMVDTVEFLVSSKADMIRGQTIIVDGGRSL 248 (258)
T ss_dssp CBCHHHHHHHHHHHTSSTTTTCCSCEEEESTTGGG
T ss_pred CcCHHHHHHHHHHHhCcccCCccCCEEEECCCccC
Confidence 99999999999999999887888888888887743
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-41 Score=338.21 Aligned_cols=252 Identities=18% Similarity=0.243 Sum_probs=210.4
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEc-------------ChhhHHHHHHHHHHHHhhhhhhcCCCCcccc
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASR-------------SSESVRMTVTELEENLKEGMMAAGGSSKKNL 240 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R-------------~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~ 240 (512)
++++|++|||||++|||+++|++|+++|++|++++| +.+.+++..+++.+
T Consensus 8 ~l~~k~~lVTGas~GIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 70 (277)
T 3tsc_A 8 KLEGRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEA----------------- 70 (277)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHH-----------------
T ss_pred ccCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHHHh-----------------
Confidence 578999999999999999999999999999999998 56666666666654
Q ss_pred cCceEEEEEccCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHh
Q 010380 241 VHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRD 320 (512)
Q Consensus 241 ~g~~v~~v~~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~ 320 (512)
.+.++.++.+|++|+++++++++++.+++|+||+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|.|++
T Consensus 71 ~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~lvnnAg~~~-~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~ 149 (277)
T 3tsc_A 71 ANRRIVAAVVDTRDFDRLRKVVDDGVAALGRLDIIVANAGVAA-PQAWDDITPEDFRDVMDINVTGTWNTVMAGAPRIIE 149 (277)
T ss_dssp TTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCC-CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCC-CCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 3568999999999999999999999999999999999999987 578899999999999999999999999999999998
Q ss_pred CCCCCeEEeecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhc
Q 010380 321 QPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIIC 400 (512)
Q Consensus 321 ~~~~g~IV~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~ 400 (512)
++.+|+||++||. ++..+.++...|++||+|+++|+++|+.|++++||+||+|+||+|+|+|....... .......
T Consensus 150 ~~~~g~iv~isS~-~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~---~~~~~~~ 225 (277)
T 3tsc_A 150 GGRGGSIILISSA-AGMKMQPFMIHYTASKHAVTGLARAFAAELGKHSIRVNSVHPGPVNTPMGSGDMVT---AVGQAME 225 (277)
T ss_dssp HTSCEEEEEECCG-GGTSCCSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSGGGSHHHHH---HHHHHHH
T ss_pred cCCCCEEEEEccH-hhCCCCCCchhhHHHHHHHHHHHHHHHHHhCccCeEEEEEEeCCCcCCcccchhhh---hhhhccc
Confidence 7557899999998 67888899999999999999999999999999999999999999999986431100 0000000
Q ss_pred CCHH---HHHHHhccccccchhhhhhhhhcCChHHHHHHHHHHhccCccc
Q 010380 401 ELPE---TVARTLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWF 447 (512)
Q Consensus 401 ~~pe---~vA~~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~ 447 (512)
..++ .....+-.++..|+|+++++.||+++...+.++..+..||++.
T Consensus 226 ~~~~~~~~~~~~~p~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG~~ 275 (277)
T 3tsc_A 226 TNPQLSHVLTPFLPDWVAEPEDIADTVCWLASDESRKVTAAQIPVDQGST 275 (277)
T ss_dssp TCGGGTTTTCCSSSCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred ccHHHHHHhhhccCCCCCCHHHHHHHHHHHhCccccCCcCCEEeeCCCcc
Confidence 0011 0011111267899999999999999998777787777777763
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-41 Score=338.41 Aligned_cols=254 Identities=20% Similarity=0.206 Sum_probs=217.4
Q ss_pred ccccccccCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCce
Q 010380 165 ANMVLEEHCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAK 244 (512)
Q Consensus 165 ~~~~~~~~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~ 244 (512)
..+.....+++++|++|||||++|||+++|++|+++|++|++++|++++++++.+++.+ .+.+
T Consensus 21 ~~~~~~~~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~-----------------~~~~ 83 (275)
T 4imr_A 21 QSMRLETIFGLRGRTALVTGSSRGIGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRIIA-----------------SGGT 83 (275)
T ss_dssp CTTSHHHHHCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHH-----------------TTCC
T ss_pred ccccccccCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHh-----------------cCCe
Confidence 34444455679999999999999999999999999999999999999998888888765 4567
Q ss_pred EEEEEccCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCC
Q 010380 245 VAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKG 324 (512)
Q Consensus 245 v~~v~~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~ 324 (512)
+.++.+|++|+++++++++++.+. +++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|.|+++ +.
T Consensus 84 ~~~~~~Dv~~~~~~~~~~~~~~~~-g~iD~lvnnAg~~~-~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~ 160 (275)
T 4imr_A 84 AQELAGDLSEAGAGTDLIERAEAI-APVDILVINASAQI-NATLSALTPNDLAFQLAVNLGSTVDMLQSALPKMVAR-KW 160 (275)
T ss_dssp EEEEECCTTSTTHHHHHHHHHHHH-SCCCEEEECCCCCC-CBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TC
T ss_pred EEEEEecCCCHHHHHHHHHHHHHh-CCCCEEEECCCCCC-CCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CC
Confidence 899999999999999999999887 99999999999977 6788999999999999999999999999999999886 57
Q ss_pred CeEEeecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHH
Q 010380 325 GHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPE 404 (512)
Q Consensus 325 g~IV~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe 404 (512)
|+||++||. ++..+.+....|++||+|+++|+++|+.|++++||+||+|+||+|+|++.......... . ..+
T Consensus 161 g~Iv~isS~-~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~-~------~~~ 232 (275)
T 4imr_A 161 GRVVSIGSI-NQLRPKSVVTAYAATKAAQHNLIQSQARDFAGDNVLLNTLAPGLVDTDRNADRRAQDPE-G------WDE 232 (275)
T ss_dssp EEEEEECCG-GGTSCCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCSHHHHHHHHHCHH-H------HHH
T ss_pred cEEEEECCH-HhCCCCCCchhhHHHHHHHHHHHHHHHHHhcccCcEEEEEEeccccCcccccccccChH-H------HHH
Confidence 899999998 56677788888999999999999999999999999999999999999986321110000 0 112
Q ss_pred HHHHH-hccccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 405 TVART-LVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 405 ~vA~~-~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
..... +++++..|+|++.++.||+++...+.++..+..||+|
T Consensus 233 ~~~~~~p~~r~~~pedvA~~v~fL~s~~a~~itG~~i~vdGG~ 275 (275)
T 4imr_A 233 YVRTLNWMGRAGRPEEMVGAALFLASEACSFMTGETIFLTGGY 275 (275)
T ss_dssp HHHHHSTTCSCBCGGGGHHHHHHHHSGGGTTCCSCEEEESSCC
T ss_pred HHhhcCccCCCcCHHHHHHHHHHHcCcccCCCCCCEEEeCCCC
Confidence 23334 6889999999999999999998877777777777764
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-41 Score=334.69 Aligned_cols=254 Identities=18% Similarity=0.221 Sum_probs=212.3
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcC----------------hhhHHHHHHHHHHHHhhhhhhcCCCC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRS----------------SESVRMTVTELEENLKEGMMAAGGSS 236 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~----------------~~~l~~~~~el~~~~~~~~~~~g~~~ 236 (512)
.++++|++|||||++|||+++|++|+++|++|++++|+ .+++++..+++.+
T Consensus 7 ~~l~~k~~lVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 73 (286)
T 3uve_A 7 GRVEGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKG------------- 73 (286)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHT-------------
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhh-------------
Confidence 35789999999999999999999999999999999987 5566665555543
Q ss_pred cccccCceEEEEEccCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHH
Q 010380 237 KKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMR 316 (512)
Q Consensus 237 ~~~~~g~~v~~v~~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp 316 (512)
.+.++.++.||++|+++++++++++.+++|+||+||||||+.....++.+.+.++|++++++|+.|+++++++++|
T Consensus 74 ----~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~ 149 (286)
T 3uve_A 74 ----HNRRIVTAEVDVRDYDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEMIDINLAGVWKTVKAGVP 149 (286)
T ss_dssp ----TTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred ----cCCceEEEEcCCCCHHHHHHHHHHHHHHhCCCCEEEECCcccCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3568999999999999999999999999999999999999977434588999999999999999999999999999
Q ss_pred HHHhCCCCCeEEeecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhh
Q 010380 317 VMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMF 396 (512)
Q Consensus 317 ~m~~~~~~g~IV~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~ 396 (512)
+|++++.+|+||++||. ++..+.++...|++||+|+++|+++|+.|++++||+||+|+||+|+|+|....... ....
T Consensus 150 ~~~~~~~~g~iv~isS~-~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~--~~~~ 226 (286)
T 3uve_A 150 HMIAGGRGGSIILTSSV-GGLKAYPHTGHYVAAKHGVVGLMRAFGVELGQHMIRVNSVHPTHVKTPMLHNEGTF--KMFR 226 (286)
T ss_dssp HHHHHTSCEEEEEECCG-GGTSCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSTTTSSHHHH--HHHC
T ss_pred HHHhCCCCcEEEEECch-hhccCCCCccHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccCCcccccchh--hhcc
Confidence 99887457899999998 67888899999999999999999999999999999999999999999997532110 0000
Q ss_pred h-hhcCCHHHHHH-------HhccccccchhhhhhhhhcCChHHHHHHHHHHhccCccc
Q 010380 397 N-IICELPETVAR-------TLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWF 447 (512)
Q Consensus 397 ~-~~~~~pe~vA~-------~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~ 447 (512)
. .....++.... .+ +++..|+|+++++.||+++...+.++..+..||++.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~p-~r~~~p~dvA~~v~fL~s~~a~~itG~~i~vdGG~~ 284 (286)
T 3uve_A 227 PDLENPGPDDMAPICQMFHTLP-IPWVEPIDISNAVLFFASDEARYITGVTLPIDAGSC 284 (286)
T ss_dssp TTSSSCCHHHHHHHHHTTCSSS-CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred ccccccchhhHHHHHHhhhccC-CCcCCHHHHHHHHHHHcCccccCCcCCEEeECCccc
Confidence 0 01112333322 12 677899999999999999998888888888877763
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-41 Score=335.40 Aligned_cols=250 Identities=25% Similarity=0.359 Sum_probs=217.0
Q ss_pred cccccCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEE
Q 010380 168 VLEEHCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAG 247 (512)
Q Consensus 168 ~~~~~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~ 247 (512)
...+.+++++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+ .+.++.+
T Consensus 23 ~~~~~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~-----------------~~~~~~~ 85 (276)
T 3r1i_A 23 SVLDLFDLSGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAG-----------------VGGKALP 85 (276)
T ss_dssp CGGGGGCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHH-----------------TTCCCEE
T ss_pred ccccccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-----------------cCCeEEE
Confidence 33445789999999999999999999999999999999999999999888888765 3567889
Q ss_pred EEccCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeE
Q 010380 248 IACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHI 327 (512)
Q Consensus 248 v~~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~I 327 (512)
+.||++|+++++++++++.+++|++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|.|.+++.+|+|
T Consensus 86 ~~~Dl~d~~~v~~~~~~~~~~~g~iD~lvnnAg~~~-~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~~g~i 164 (276)
T 3r1i_A 86 IRCDVTQPDQVRGMLDQMTGELGGIDIAVCNAGIVS-VQAMLDMPLEEFQRIQDTNVTGVFLTAQAAARAMVDQGLGGTI 164 (276)
T ss_dssp EECCTTCHHHHHHHHHHHHHHHSCCSEEEECCCCCC-CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEE
T ss_pred EEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCC-CCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEE
Confidence 999999999999999999999999999999999987 6788999999999999999999999999999999987556899
Q ss_pred EeecCCCCCCCCC--CCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHH
Q 010380 328 FNMDGAGSGGSST--PLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPET 405 (512)
Q Consensus 328 V~vSS~~a~~~~~--p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~ 405 (512)
|++||. ++..+. ++...|++||+|+++|+++++.|++++||+||+|+||+|+|++...... . ....
T Consensus 165 v~isS~-~~~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~-----~------~~~~ 232 (276)
T 3r1i_A 165 ITTASM-SGHIINIPQQVSHYCTSKAAVVHLTKAMAVELAPHQIRVNSVSPGYIRTELVEPLAD-----Y------HALW 232 (276)
T ss_dssp EEECCG-GGTSCCCSSCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSTTTGGGGG-----G------HHHH
T ss_pred EEECch-HhcccCCCCCcchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcCCccccchH-----H------HHHH
Confidence 999987 444332 3678999999999999999999999999999999999999999743211 0 0112
Q ss_pred HHHHhccccccchhhhhhhhhcCChHHHHHHHHHHhccCccc
Q 010380 406 VARTLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWF 447 (512)
Q Consensus 406 vA~~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~ 447 (512)
....+++++..|+|+++++.||+++...+.++..+..||++.
T Consensus 233 ~~~~p~~r~~~pedvA~~v~fL~s~~~~~itG~~i~vdGG~~ 274 (276)
T 3r1i_A 233 EPKIPLGRMGRPEELTGLYLYLASAASSYMTGSDIVIDGGYT 274 (276)
T ss_dssp GGGSTTSSCBCGGGSHHHHHHHHSGGGTTCCSCEEEESTTTT
T ss_pred HhcCCCCCCcCHHHHHHHHHHHcCccccCccCcEEEECcCcc
Confidence 234567899999999999999999988888888888888764
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-41 Score=332.90 Aligned_cols=242 Identities=20% Similarity=0.296 Sum_probs=212.5
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
++++|++|||||++|||+++|++|+++|++|++++|+.+++++..+++ +.++.++.||++
T Consensus 3 ~l~gk~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~--------------------~~~~~~~~~Dv~ 62 (247)
T 3rwb_A 3 RLAGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASI--------------------GKKARAIAADIS 62 (247)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH--------------------CTTEEECCCCTT
T ss_pred CcCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--------------------CCceEEEEcCCC
Confidence 578999999999999999999999999999999999998877666554 346888999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
|+++++++++++.+++|++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|+|++++..|+||++||.
T Consensus 63 ~~~~v~~~~~~~~~~~g~id~lv~nAg~~~-~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~ 141 (247)
T 3rwb_A 63 DPGSVKALFAEIQALTGGIDILVNNASIVP-FVAWDDVDLDHWRKIIDVNLTGTFIVTRAGTDQMRAAGKAGRVISIASN 141 (247)
T ss_dssp CHHHHHHHHHHHHHHHSCCSEEEECCCCCC-CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCT
T ss_pred CHHHHHHHHHHHHHHCCCCCEEEECCCCCC-CCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCcEEEEECch
Confidence 999999999999999999999999999986 6789999999999999999999999999999999987447899999997
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHH-Hhcc
Q 010380 334 GSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVAR-TLVP 412 (512)
Q Consensus 334 ~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~-~~l~ 412 (512)
.+..+.++...|++||+|+++|+++|+.|++++||+||+|+||+|+|++......... ...... .+++
T Consensus 142 -~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~----------~~~~~~~~~~~ 210 (247)
T 3rwb_A 142 -TFFAGTPNMAAYVAAKGGVIGFTRALATELGKYNITANAVTPGLIESDGVKASPHNEA----------FGFVEMLQAMK 210 (247)
T ss_dssp -HHHHTCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTSGGGGG----------HHHHHHHSSSC
T ss_pred -hhccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCcCccccccChhHH----------HHHHhcccccC
Confidence 6777889999999999999999999999999999999999999999998654221111 111222 5678
Q ss_pred ccccchhhhhhhhhcCChHHHHHHHHHHhccCccc
Q 010380 413 RIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWF 447 (512)
Q Consensus 413 r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~ 447 (512)
+...|+|+++++.||+++...+.++..+..||++.
T Consensus 211 r~~~pedva~~v~~L~s~~~~~itG~~i~vdGG~~ 245 (247)
T 3rwb_A 211 GKGQPEHIADVVSFLASDDARWITGQTLNVDAGMV 245 (247)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTSS
T ss_pred CCcCHHHHHHHHHHHhCccccCCCCCEEEECCCcc
Confidence 89999999999999999998787888888887764
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-41 Score=334.05 Aligned_cols=248 Identities=22% Similarity=0.287 Sum_probs=213.4
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
++++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+ .+.++.++.||++
T Consensus 3 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-----------------~~~~~~~~~~Dv~ 65 (257)
T 3imf_A 3 AMKEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQ-----------------FPGQILTVQMDVR 65 (257)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC-----------------STTCEEEEECCTT
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-----------------cCCcEEEEEccCC
Confidence 57899999999999999999999999999999999999988887777643 3567999999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
|+++++++++++.+++|++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|+|.++.+.|+||++||.
T Consensus 66 ~~~~v~~~~~~~~~~~g~id~lv~nAg~~~-~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~ 144 (257)
T 3imf_A 66 NTDDIQKMIEQIDEKFGRIDILINNAAGNF-ICPAEDLSVNGWNSVINIVLNGTFYCSQAIGKYWIEKGIKGNIINMVAT 144 (257)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCCC-CCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEECCG
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCC-CCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCcEEEEECch
Confidence 999999999999999999999999999876 6788999999999999999999999999999999665467999999998
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHHhC-CCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhcc
Q 010380 334 GSGGSSTPLTAVYGSTKCGLRQLQASLFKESK-RSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVP 412 (512)
Q Consensus 334 ~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~-~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~ 412 (512)
.+..+.++...|++||+|+++|+++|+.|++ ++||+||+|+||+|+|++......... ..........+++
T Consensus 145 -~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~~~gIrvn~v~PG~v~t~~~~~~~~~~~-------~~~~~~~~~~p~~ 216 (257)
T 3imf_A 145 -YAWDAGPGVIHSAAAKAGVLAMTKTLAVEWGRKYGIRVNAIAPGPIERTGGADKLWISE-------EMAKRTIQSVPLG 216 (257)
T ss_dssp -GGGSCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCBSSCCCC--------------CCSHHHHTTSTTC
T ss_pred -hhccCCCCcHHHHHHHHHHHHHHHHHHHHhccccCeEEEEEEECCCcCCcchhhcccCH-------HHHHHHHhcCCCC
Confidence 6778889999999999999999999999997 779999999999999998643211100 0112223345678
Q ss_pred ccccchhhhhhhhhcCChHHHHHHHHHHhccCccc
Q 010380 413 RIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWF 447 (512)
Q Consensus 413 r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~ 447 (512)
++..|+|++.++.||+++...+.++..+..||++.
T Consensus 217 r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG~~ 251 (257)
T 3imf_A 217 RLGTPEEIAGLAYYLCSDEAAYINGTCMTMDGGQH 251 (257)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTTT
T ss_pred CCcCHHHHHHHHHHHcCchhcCccCCEEEECCCcc
Confidence 99999999999999999988777777777777763
|
| >3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-41 Score=337.44 Aligned_cols=249 Identities=22% Similarity=0.252 Sum_probs=214.4
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
++++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+ .+.++.++.+|++
T Consensus 5 ~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~-----------------~~~~~~~~~~Dv~ 67 (280)
T 3tox_A 5 RLEGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAG-----------------GGGEAAALAGDVG 67 (280)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHTT-----------------TTCCEEECCCCTT
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh-----------------cCCcEEEEECCCC
Confidence 57899999999999999999999999999999999999988887777643 3568899999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
|+++++++++++.+++|++|+||||||+.....++.+.+.++|++++++|+.|+++++++++|.|+++ +.|+||++||.
T Consensus 68 ~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~isS~ 146 (280)
T 3tox_A 68 DEALHEALVELAVRRFGGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAAL-GGGSLTFTSSF 146 (280)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCCCSCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECCS
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCCEEEEEcCh
Confidence 99999999999999999999999999987546788999999999999999999999999999999987 57899999998
Q ss_pred CCCC-CCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhcc
Q 010380 334 GSGG-SSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVP 412 (512)
Q Consensus 334 ~a~~-~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~ 412 (512)
.+. .+.++...|++||+|+++|+++|+.|++++||+||+|+||+|+|++............. .......+++
T Consensus 147 -~~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~------~~~~~~~p~~ 219 (280)
T 3tox_A 147 -VGHTAGFAGVAPYAASKAGLIGLVQALAVELGARGIRVNALLPGGTDTPANFANLPGAAPETR------GFVEGLHALK 219 (280)
T ss_dssp -BTTTBCCTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBSSTTSGGGSTTCCTHHH------HHHHTTSTTS
T ss_pred -hhCcCCCCCchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEECCCCCchhhhhccccCHHHH------HHHhccCccC
Confidence 454 67889999999999999999999999999999999999999999986431111011110 1112234578
Q ss_pred ccccchhhhhhhhhcCChHHHHHHHHHHhccCccc
Q 010380 413 RIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWF 447 (512)
Q Consensus 413 r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~ 447 (512)
++..|+|+++++.||+++...+.++..+..||++.
T Consensus 220 r~~~pedvA~~v~~L~s~~a~~itG~~i~vdGG~~ 254 (280)
T 3tox_A 220 RIARPEEIAEAALYLASDGASFVTGAALLADGGAS 254 (280)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred CCcCHHHHHHHHHHHhCccccCCcCcEEEECCCcc
Confidence 89999999999999999988777888888887764
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-41 Score=334.39 Aligned_cols=249 Identities=20% Similarity=0.230 Sum_probs=214.9
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
.+++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+ .+.++.++.||++
T Consensus 8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-----------------~~~~~~~~~~Dv~ 70 (264)
T 3ucx_A 8 LLTDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTD-----------------TGRRALSVGTDIT 70 (264)
T ss_dssp TTTTCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-----------------TTCCEEEEECCTT
T ss_pred CcCCcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHh-----------------cCCcEEEEEcCCC
Confidence 47899999999999999999999999999999999999999888888765 4568999999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
|+++++++++++.+++|++|+||||||+.....++.+.+.++|++++++|+.++++++++++|.|+++ +|+||++||.
T Consensus 71 ~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~--~g~iv~isS~ 148 (264)
T 3ucx_A 71 DDAQVAHLVDETMKAYGRVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALRLIQGFTPALEES--KGAVVNVNSM 148 (264)
T ss_dssp CHHHHHHHHHHHHHHTSCCSEEEECCCSCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHH--TCEEEEECCG
T ss_pred CHHHHHHHHHHHHHHcCCCcEEEECCCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCEEEEECcc
Confidence 99999999999999999999999999986546789999999999999999999999999999999875 4899999998
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHH-----HHH
Q 010380 334 GSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPET-----VAR 408 (512)
Q Consensus 334 ~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~-----vA~ 408 (512)
.+..+.++...|++||+|+++|+++|+.|++++||+||+|+||+|+|++......... ......+++ ...
T Consensus 149 -~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 223 (264)
T 3ucx_A 149 -VVRHSQAKYGAYKMAKSALLAMSQTLATELGEKGIRVNSVLPGYIWGGTLKSYFEHQA----GKYGTSVEDIYNAAAAG 223 (264)
T ss_dssp -GGGCCCTTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSCBSHHHHHHHHHHH----HHTTCCHHHHHHHHHTT
T ss_pred -hhccCCCccHHHHHHHHHHHHHHHHHHHHhCccCeEEEEEecCccccccHHHHHHhhh----hhcCCCHHHHHHHHhcc
Confidence 6778889999999999999999999999999999999999999999998643211100 000011222 233
Q ss_pred HhccccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 409 TLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 409 ~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
.+++++..|+|+++++.||+++...+.++..+..||++
T Consensus 224 ~p~~r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG~ 261 (264)
T 3ucx_A 224 SDLKRLPTEDEVASAILFMASDLASGITGQALDVNCGE 261 (264)
T ss_dssp SSSSSCCBHHHHHHHHHHHHSGGGTTCCSCEEEESTTS
T ss_pred CCcccCCCHHHHHHHHHHHcCccccCCCCCEEEECCCc
Confidence 56788999999999999999998877777777777765
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-41 Score=337.35 Aligned_cols=255 Identities=20% Similarity=0.217 Sum_probs=212.1
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcC------------hhhHHHHHHHHHHHHhhhhhhcCCCCcccc
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRS------------SESVRMTVTELEENLKEGMMAAGGSSKKNL 240 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~------------~~~l~~~~~el~~~~~~~~~~~g~~~~~~~ 240 (512)
.++++|++|||||++|||+++|++|+++|++|++++|+ .+++++..+++.+
T Consensus 24 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 86 (299)
T 3t7c_A 24 GKVEGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEA----------------- 86 (299)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHH-----------------
T ss_pred cccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHh-----------------
Confidence 35789999999999999999999999999999999987 6667776666654
Q ss_pred cCceEEEEEccCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHh
Q 010380 241 VHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRD 320 (512)
Q Consensus 241 ~g~~v~~v~~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~ 320 (512)
.+.++.++.||++|+++++++++++.+++|+||+||||||+.....++.+.+.++|++++++|+.|+++++++++|.|.+
T Consensus 87 ~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~ 166 (299)
T 3t7c_A 87 LGRRIIASQVDVRDFDAMQAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDMIDVNLNGAWITARVAIPHIMA 166 (299)
T ss_dssp TTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred cCCceEEEECCCCCHHHHHHHHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 45689999999999999999999999999999999999998874345889999999999999999999999999999988
Q ss_pred CCCCCeEEeecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhh-h
Q 010380 321 QPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNI-I 399 (512)
Q Consensus 321 ~~~~g~IV~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~-~ 399 (512)
+++.|+||++||. ++..+.++...|++||+|+++|+++|+.|++++||+||+|+||+|+|+|....... ..+... .
T Consensus 167 ~~~~g~Iv~isS~-~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~--~~~~~~~~ 243 (299)
T 3t7c_A 167 GKRGGSIVFTSSI-GGLRGAENIGNYIASKHGLHGLMRTMALELGPRNIRVNIVCPSSVATPMLLNEPTY--RMFRPDLE 243 (299)
T ss_dssp TTSCEEEEEECCG-GGTSCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBSSTTTSSHHHH--HHHCTTSS
T ss_pred cCCCcEEEEECCh-hhccCCCCcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCCccCccccccchh--hhhhhhhc
Confidence 7567999999998 67888899999999999999999999999999999999999999999997532110 000000 0
Q ss_pred cCCHHH------HHHHhccccccchhhhhhhhhcCChHHHHHHHHHHhccCccc
Q 010380 400 CELPET------VARTLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWF 447 (512)
Q Consensus 400 ~~~pe~------vA~~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~ 447 (512)
....+. ....+-.++..|+|+++++.||+++...+.++..+..||++.
T Consensus 244 ~~~~~~~~~~~~~~~~~p~r~~~pedvA~~v~fL~s~~a~~itG~~i~vdGG~~ 297 (299)
T 3t7c_A 244 NPTVEDFQVASRQMHVLPIPYVEPADISNAILFLVSDDARYITGVSLPVDGGAL 297 (299)
T ss_dssp SCCHHHHHHHHHHHSSSSCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred cchhhHHHHHhhhhcccCcCCCCHHHHHHHHHHHhCcccccCcCCEEeeCCCcc
Confidence 001111 111111567899999999999999998777888887777763
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-41 Score=336.64 Aligned_cols=249 Identities=21% Similarity=0.278 Sum_probs=210.4
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEc-------------ChhhHHHHHHHHHHHHhhhhhhcCCCCccc
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASR-------------SSESVRMTVTELEENLKEGMMAAGGSSKKN 239 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R-------------~~~~l~~~~~el~~~~~~~~~~~g~~~~~~ 239 (512)
.++++|++|||||++|||+++|++|+++|++|++++| +.++++++.+++.+
T Consensus 11 ~~l~gk~~lVTGas~gIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 74 (280)
T 3pgx_A 11 GSLQGRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVED---------------- 74 (280)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHT----------------
T ss_pred cccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHh----------------
Confidence 3689999999999999999999999999999999998 56677766666544
Q ss_pred ccCceEEEEEccCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 010380 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMR 319 (512)
Q Consensus 240 ~~g~~v~~v~~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~ 319 (512)
.+.++.++.+|++|+++++++++++.+++|++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|+|+
T Consensus 75 -~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lvnnAg~~~-~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~ 152 (280)
T 3pgx_A 75 -QGRKALTRVLDVRDDAALRELVADGMEQFGRLDVVVANAGVLS-WGRVWELTDEQWDTVIGVNLTGTWRTLRATVPAMI 152 (280)
T ss_dssp -TTCCEEEEECCTTCHHHHHHHHHHHHHHHCCCCEEEECCCCCC-CBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred -cCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCC-CCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 4568899999999999999999999999999999999999987 67899999999999999999999999999999998
Q ss_pred hCCCCCeEEeecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhh
Q 010380 320 DQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNII 399 (512)
Q Consensus 320 ~~~~~g~IV~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~ 399 (512)
+++.+|+||++||. ++..+.++...|++||+|+++|+++|+.|++++||+||+|+||+|+|++...... .....
T Consensus 153 ~~~~~g~iv~isS~-~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~---~~~~~-- 226 (280)
T 3pgx_A 153 EAGNGGSIVVVSSS-AGLKATPGNGHYSASKHGLTALTNTLAIELGEYGIRVNSIHPYSVETPMIEPEAM---MEIFA-- 226 (280)
T ss_dssp HHCSCEEEEEECCG-GGTSCCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTCCHHHH---HHHHH--
T ss_pred hcCCCCEEEEEcch-hhccCCCCchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccCcccchhhh---hhhhh--
Confidence 87457899999998 6788889999999999999999999999999999999999999999998642110 00000
Q ss_pred cCCHHH------HHHHhccccccchhhhhhhhhcCChHHHHHHHHHHhccCccc
Q 010380 400 CELPET------VARTLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWF 447 (512)
Q Consensus 400 ~~~pe~------vA~~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~ 447 (512)
..++. ....+. ++..|+|+++++.||+++...+.++..+..||++.
T Consensus 227 -~~~~~~~~~~~~~~~~~-r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG~~ 278 (280)
T 3pgx_A 227 -RHPSFVHSFPPMPVQPN-GFMTADEVADVVAWLAGDGSGTLTGTQIPVDKGAL 278 (280)
T ss_dssp -HCGGGGGGSCCBTTBCS-SCBCHHHHHHHHHHHHSGGGTTCSSCEEEESTTGG
T ss_pred -cCchhhhhhhhcccCCC-CCCCHHHHHHHHHHHhCccccCCCCCEEEECCCcc
Confidence 00110 011123 57789999999999999988777777777777653
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-40 Score=333.59 Aligned_cols=252 Identities=19% Similarity=0.258 Sum_probs=216.6
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
+++++|++|||||++|||+++|++|+++|++|++++|+++++++..+++.+.. ..+.++.++.+|+
T Consensus 7 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--------------~~~~~~~~~~~Dv 72 (281)
T 3svt_A 7 LSFQDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALG--------------ANGGAIRYEPTDI 72 (281)
T ss_dssp -CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTC--------------CSSCEEEEEECCT
T ss_pred cCcCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC--------------CCCceEEEEeCCC
Confidence 46889999999999999999999999999999999999999888888876521 0124899999999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|+++++++++++.+++|++|+||||||+.....++.+.+.++|++++++|+.|+++++++++|.|.++ ++|+||++||
T Consensus 73 ~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~-~~g~iv~isS 151 (281)
T 3svt_A 73 TNEDETARAVDAVTAWHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTMYVLKHAAREMVRG-GGGSFVGISS 151 (281)
T ss_dssp TSHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCEEEEEECC
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCcEEEEEeC
Confidence 999999999999999999999999999985446788999999999999999999999999999999987 5789999999
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhcc
Q 010380 333 AGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVP 412 (512)
Q Consensus 333 ~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~ 412 (512)
. ++..+.++...|++||+|+++|+++++.|++++||+||+|+||+|+|+|....... ... ........+++
T Consensus 152 ~-~~~~~~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~--~~~------~~~~~~~~p~~ 222 (281)
T 3svt_A 152 I-AASNTHRWFGAYGVTKSAVDHLMQLAADELGASWVRVNSIRPGLIRTDLVAAITES--AEL------SSDYAMCTPLP 222 (281)
T ss_dssp H-HHHSCCTTCTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHTC--HHH------HHHHHHHCSSS
T ss_pred H-HHcCCCCCChhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCcCcCcchhhcccC--HHH------HHHHHhcCCCC
Confidence 8 66778888999999999999999999999999999999999999999986421100 000 12233456788
Q ss_pred ccccchhhhhhhhhcCChHHHHHHHHHHhccCcccc
Q 010380 413 RIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWFD 448 (512)
Q Consensus 413 r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~~ 448 (512)
++..|+|+++++.||+++...+.++..+..||++..
T Consensus 223 r~~~~~dva~~~~~l~s~~~~~itG~~~~vdgG~~~ 258 (281)
T 3svt_A 223 RQGEVEDVANMAMFLLSDAASFVTGQVINVDGGQML 258 (281)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGG
T ss_pred CCCCHHHHHHHHHHHhCcccCCCCCCEEEeCCChhc
Confidence 999999999999999999887777777877777644
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-41 Score=335.48 Aligned_cols=244 Identities=21% Similarity=0.355 Sum_probs=214.2
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
.++++|++|||||++|||+++|++|+++|++|++++|+.+.++++.+++.+ .+.++.++.+|+
T Consensus 24 ~~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~-----------------~~~~~~~~~~Dv 86 (270)
T 3ftp_A 24 KTLDKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQ-----------------AGLEGRGAVLNV 86 (270)
T ss_dssp CTTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHH-----------------HTCCCEEEECCT
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-----------------cCCcEEEEEEeC
Confidence 457899999999999999999999999999999999999998888887765 345788899999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|+++++++++++.+++|++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|.|+++ +.|+||++||
T Consensus 87 ~d~~~v~~~~~~~~~~~g~iD~lvnnAg~~~-~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~isS 164 (270)
T 3ftp_A 87 NDATAVDALVESTLKEFGALNVLVNNAGITQ-DQLAMRMKDDEWDAVIDTNLKAVFRLSRAVLRPMMKA-RGGRIVNITS 164 (270)
T ss_dssp TCHHHHHHHHHHHHHHHSCCCEEEECCCCCC-CBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECC
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCCCC-CCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCCEEEEECc
Confidence 9999999999999999999999999999987 6788899999999999999999999999999999876 5799999999
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhcc
Q 010380 333 AGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVP 412 (512)
Q Consensus 333 ~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~ 412 (512)
. ++..+.++...|++||+|+++|+++|+.|++++||+||+|+||+|+|+|......... .......+++
T Consensus 165 ~-~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~----------~~~~~~~p~~ 233 (270)
T 3ftp_A 165 V-VGSAGNPGQVNYAAAKAGVAGMTRALAREIGSRGITVNCVAPGFIDTDMTKGLPQEQQ----------TALKTQIPLG 233 (270)
T ss_dssp H-HHHHCCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSHHHHHSCHHHH----------HHHHTTCTTC
T ss_pred h-hhCCCCCCchhHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeCCCcCcchhhcCHHHH----------HHHHhcCCCC
Confidence 7 6777888999999999999999999999999999999999999999998643211100 1112234678
Q ss_pred ccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 413 RIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 413 r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
++..|+|+++++.||+++...+.++..+..||++
T Consensus 234 r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG~ 267 (270)
T 3ftp_A 234 RLGSPEDIAHAVAFLASPQAGYITGTTLHVNGGM 267 (270)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTS
T ss_pred CCCCHHHHHHHHHHHhCCCcCCccCcEEEECCCc
Confidence 8999999999999999998877777777777765
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-41 Score=335.48 Aligned_cols=248 Identities=22% Similarity=0.269 Sum_probs=215.0
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
.++++|++|||||++|||+++|++|+++|++|++++|+.+++++..+++.+. .+.++.++.+|+
T Consensus 23 ~~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~----------------~~~~~~~~~~Dv 86 (277)
T 4fc7_A 23 DLLRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGA----------------TGRRCLPLSMDV 86 (277)
T ss_dssp TTTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHH----------------HSSCEEEEECCT
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh----------------cCCcEEEEEcCC
Confidence 3588999999999999999999999999999999999999888888877553 346799999999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|+++++++++++.+++|++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|.|.++ +.|+||++||
T Consensus 87 ~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~-~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~g~iv~isS 164 (277)
T 4fc7_A 87 RAPPAVMAAVDQALKEFGRIDILINCAAGNF-LCPAGALSFNAFKTVMDIDTSGTFNVSRVLYEKFFRD-HGGVIVNITA 164 (277)
T ss_dssp TCHHHHHHHHHHHHHHHSCCCEEEECCCCCC-CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHH-HCEEEEEECC
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCcCCC-CCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCCEEEEECc
Confidence 9999999999999999999999999999876 6788999999999999999999999999999999876 5789999999
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhcc
Q 010380 333 AGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVP 412 (512)
Q Consensus 333 ~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~ 412 (512)
. ++..+.++...|++||+|+++|+++|+.|++++||+||+|+||+|+|++.......... . ........+++
T Consensus 165 ~-~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~-~------~~~~~~~~p~~ 236 (277)
T 4fc7_A 165 T-LGNRGQALQVHAGSAKAAVDAMTRHLAVEWGPQNIRVNSLAPGPISGTEGLRRLGGPQA-S------LSTKVTASPLQ 236 (277)
T ss_dssp S-HHHHTCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBSSSHHHHHHSCCHH-H------HHHHHHTSTTS
T ss_pred h-hhCCCCCCcHHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEECCEecchhhhhccCCHH-H------HHHHhccCCCC
Confidence 8 67778889999999999999999999999999999999999999999864211100000 0 12233456788
Q ss_pred ccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 413 RIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 413 r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
++..|+|+++++.||+++...+.++..+..||++
T Consensus 237 r~~~p~dvA~~v~fL~s~~~~~itG~~i~vdGG~ 270 (277)
T 4fc7_A 237 RLGNKTEIAHSVLYLASPLASYVTGAVLVADGGA 270 (277)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTH
T ss_pred CCcCHHHHHHHHHHHcCCccCCcCCCEEEECCCc
Confidence 9999999999999999998877777777777765
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-40 Score=328.10 Aligned_cols=253 Identities=23% Similarity=0.303 Sum_probs=210.8
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcC-hhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEcc
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRS-SESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACD 251 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~-~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~D 251 (512)
.++++|++|||||++|||+++|++|+++|++|++++++ .+.++++.+++.+ .+.++.++.||
T Consensus 14 ~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~D 76 (270)
T 3is3_A 14 GRLDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKA-----------------LGSDAIAIKAD 76 (270)
T ss_dssp TCCTTCEEEESCTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH-----------------TTCCEEEEECC
T ss_pred CCcCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHh-----------------cCCcEEEEEcC
Confidence 46899999999999999999999999999999998765 5666667777655 45689999999
Q ss_pred CCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeec
Q 010380 252 VCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD 331 (512)
Q Consensus 252 ltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vS 331 (512)
++|+++++++++++.+++|++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|+|++ +|+||++|
T Consensus 77 v~~~~~v~~~~~~~~~~~g~id~lvnnAg~~~-~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~---~g~iv~is 152 (270)
T 3is3_A 77 IRQVPEIVKLFDQAVAHFGHLDIAVSNSGVVS-FGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTE---GGRIVLTS 152 (270)
T ss_dssp TTSHHHHHHHHHHHHHHHSCCCEEECCCCCCC-CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCT---TCEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCCCCC-CCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhc---CCeEEEEe
Confidence 99999999999999999999999999999986 688999999999999999999999999999999975 58999999
Q ss_pred CCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhh--cCCHHHHHHH
Q 010380 332 GAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNII--CELPETVART 409 (512)
Q Consensus 332 S~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~--~~~pe~vA~~ 409 (512)
|..+...+.++...|++||+|+++|+++|+.|++++||+||+|+||+|+|+|................ ..........
T Consensus 153 S~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (270)
T 3is3_A 153 SNTSKDFSVPKHSLYSGSKGAVDSFVRIFSKDCGDKKITVNAVAPGGTVTDMFHEVSHHYIPNGTSYTAEQRQQMAAHAS 232 (270)
T ss_dssp CTTTTTCCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSTTHHHHGGGGSTTGGGSCHHHHHHHHHHHS
T ss_pred CchhccCCCCCCchhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCCccChhhhhhhhhccccccccchHHHHHHHHhcC
Confidence 98546678889999999999999999999999999999999999999999987421110000000000 0001123345
Q ss_pred hccccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 410 LVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 410 ~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
+++++..|+|+++++.||+++...+.++..+..||++
T Consensus 233 p~~r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG~ 269 (270)
T 3is3_A 233 PLHRNGWPQDVANVVGFLVSKEGEWVNGKVLTLDGGA 269 (270)
T ss_dssp TTCSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTC
T ss_pred CCCCCCCHHHHHHHHHHHcCCccCCccCcEEEeCCCC
Confidence 7889999999999999999998877777777777664
|
| >3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-40 Score=326.41 Aligned_cols=242 Identities=23% Similarity=0.381 Sum_probs=210.0
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEc-ChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 175 AGPRNVVITGSTRGLGKALAREFLLSGDRVVVASR-SSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 175 l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R-~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
+.+|++|||||++|||+++|++|+++|++|++++| +.++++++.+++.+ .+.++.++.+|++
T Consensus 2 l~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~Dv~ 64 (246)
T 3osu_A 2 KMTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKA-----------------KGVDSFAIQANVA 64 (246)
T ss_dssp CCSCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH-----------------TTSCEEEEECCTT
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHh-----------------cCCcEEEEEccCC
Confidence 56899999999999999999999999999999887 45777777777655 4567899999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
|+++++++++++.+++|++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|+|+++ +.|+||++||.
T Consensus 65 d~~~v~~~~~~~~~~~g~id~lv~nAg~~~-~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~-~~g~iv~isS~ 142 (246)
T 3osu_A 65 DADEVKAMIKEVVSQFGSLDVLVNNAGITR-DNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQ-RSGAIINLSSV 142 (246)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCCC-CCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCH
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCC-CCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCCEEEEEcch
Confidence 999999999999999999999999999987 5788999999999999999999999999999999876 57899999997
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhccc
Q 010380 334 GSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPR 413 (512)
Q Consensus 334 ~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~r 413 (512)
++..+.++...|++||+|+++|+++++.|++++||+||+|+||+|+|++......... .......++++
T Consensus 143 -~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~----------~~~~~~~p~~r 211 (246)
T 3osu_A 143 -VGAVGNPGQANYVATKAGVIGLTKSAARELASRGITVNAVAPGFIVSDMTDALSDELK----------EQMLTQIPLAR 211 (246)
T ss_dssp -HHHHCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBGGGCCSCSCHHHH----------HHHHTTCTTCS
T ss_pred -hhcCCCCCChHHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECCCcCCcccccCHHHH----------HHHHhcCCCCC
Confidence 5677788999999999999999999999999999999999999999999754322111 11223456788
Q ss_pred cccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 414 IRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 414 ~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
+..|+|+++++.||+++...+.++..+..||++
T Consensus 212 ~~~~~dva~~v~~l~s~~~~~itG~~i~vdgG~ 244 (246)
T 3osu_A 212 FGQDTDIANTVAFLASDKAKYITGQTIHVNGGM 244 (246)
T ss_dssp CBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTS
T ss_pred CcCHHHHHHHHHHHhCccccCCCCCEEEeCCCc
Confidence 999999999999999998777667777666665
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-40 Score=333.54 Aligned_cols=250 Identities=22% Similarity=0.346 Sum_probs=213.4
Q ss_pred ccCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEc
Q 010380 171 EHCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIAC 250 (512)
Q Consensus 171 ~~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~ 250 (512)
..+++++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++ +.++.++.+
T Consensus 21 ~~~~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~--------------------~~~~~~~~~ 80 (277)
T 4dqx_A 21 QSMDLNQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANEI--------------------GSKAFGVRV 80 (277)
T ss_dssp -CCTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH--------------------CTTEEEEEC
T ss_pred ccCCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--------------------CCceEEEEe
Confidence 346789999999999999999999999999999999999988877665553 346888999
Q ss_pred cCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEee
Q 010380 251 DVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNM 330 (512)
Q Consensus 251 Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~v 330 (512)
|++|+++++++++++.+++|++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|.|+++ +.|+||++
T Consensus 81 Dv~d~~~v~~~~~~~~~~~g~iD~lv~nAg~~~-~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~-~~g~iv~i 158 (277)
T 4dqx_A 81 DVSSAKDAESMVEKTTAKWGRVDVLVNNAGFGT-TGNVVTIPEETWDRIMSVNVKGIFLCSKYVIPVMRRN-GGGSIINT 158 (277)
T ss_dssp CTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCC-CBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTT-TCEEEEEE
T ss_pred cCCCHHHHHHHHHHHHHHcCCCCEEEECCCcCC-CCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCcEEEEE
Confidence 999999999999999999999999999999877 6788999999999999999999999999999999876 57899999
Q ss_pred cCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHh
Q 010380 331 DGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTL 410 (512)
Q Consensus 331 SS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~ 410 (512)
||. ++..+.++...|++||+|+++|+++|+.|++++||+||+|+||+|+|+|......... ..... ........+
T Consensus 159 sS~-~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~-~~~~~---~~~~~~~~~ 233 (277)
T 4dqx_A 159 TSY-TATSAIADRTAYVASKGAISSLTRAMAMDHAKEGIRVNAVAPGTIDSPYFTKIFAEAK-DPAKL---RSDFNARAV 233 (277)
T ss_dssp CCG-GGTSCCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHHTCS-CHHHH---HHHHHTTST
T ss_pred Cch-hhCcCCCCChhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCcCchhhhhccccc-chhHH---HHHHHhcCc
Confidence 998 6788889999999999999999999999999999999999999999998422110000 00000 011234456
Q ss_pred ccccccchhhhhhhhhcCChHHHHHHHHHHhccCccc
Q 010380 411 VPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWF 447 (512)
Q Consensus 411 l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~ 447 (512)
++++..|+|+++++.||+++...+.++..+..||++.
T Consensus 234 ~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG~~ 270 (277)
T 4dqx_A 234 MDRMGTAEEIAEAMLFLASDRSRFATGSILTVDGGSS 270 (277)
T ss_dssp TCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESSSSS
T ss_pred ccCCcCHHHHHHHHHHHhCCccCCCcCCEEEECCchh
Confidence 7889999999999999999988777888888887764
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-40 Score=327.32 Aligned_cols=250 Identities=22% Similarity=0.319 Sum_probs=211.5
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
++++|++|||||++|||+++|++|+++|++|++++|+.+++++..+++ +.++.++.||++
T Consensus 5 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~--------------------~~~~~~~~~D~~ 64 (259)
T 4e6p_A 5 RLEGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEI--------------------GPAAYAVQMDVT 64 (259)
T ss_dssp TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH--------------------CTTEEEEECCTT
T ss_pred cCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--------------------CCCceEEEeeCC
Confidence 578999999999999999999999999999999999998887766654 245788999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
|+++++++++++.+++|++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|.|.+++.+|+||++||.
T Consensus 65 ~~~~v~~~~~~~~~~~g~id~lv~~Ag~~~-~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~ 143 (259)
T 4e6p_A 65 RQDSIDAAIAATVEHAGGLDILVNNAALFD-LAPIVEITRESYEKLFAINVAGTLFTLQAAARQMIAQGRGGKIINMASQ 143 (259)
T ss_dssp CHHHHHHHHHHHHHHSSSCCEEEECCCCCC-CBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCG
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCcCC-CCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEECCh
Confidence 999999999999999999999999999986 6788999999999999999999999999999999887457899999998
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcC--CHHHHHHHhc
Q 010380 334 GSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICE--LPETVARTLV 411 (512)
Q Consensus 334 ~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~--~pe~vA~~~l 411 (512)
++..+.++...|++||+|+++|+++++.|++++||+||+|+||+|+||+......... ........ ........++
T Consensus 144 -~~~~~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~ 221 (259)
T 4e6p_A 144 -AGRRGEALVAIYCATKAAVISLTQSAGLDLIKHRINVNAIAPGVVDGEHWDGVDALFA-RYENRPRGEKKRLVGEAVPF 221 (259)
T ss_dssp -GGTSCCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSTTHHHHHHHHH-HHHTCCTTHHHHHHHHHSTT
T ss_pred -hhccCCCCChHHHHHHHHHHHHHHHHHHHhhhcCCEEEEEEECCCccchhhhhhhhhh-hhccCChHHHHHHHhccCCC
Confidence 6788889999999999999999999999999999999999999999998643210000 00000000 0112344678
Q ss_pred cccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 412 PRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 412 ~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
+++..|+|+++++.||+++...+.++..+..||++
T Consensus 222 ~r~~~~~dva~~v~~L~s~~~~~itG~~i~vdgG~ 256 (259)
T 4e6p_A 222 GRMGTAEDLTGMAIFLASAESDYIVSQTYNVDGGN 256 (259)
T ss_dssp SSCBCTHHHHHHHHHTTSGGGTTCCSCEEEESTTS
T ss_pred CCCcCHHHHHHHHHHHhCCccCCCCCCEEEECcCh
Confidence 89999999999999999998877777777777665
|
| >3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-40 Score=333.08 Aligned_cols=252 Identities=25% Similarity=0.358 Sum_probs=208.0
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEc-ChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEcc
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASR-SSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACD 251 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R-~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~D 251 (512)
.++.+|++|||||++|||+++|++|+++|++|++++| +.+.+++..+++.+. .+.++.++.+|
T Consensus 21 ~~l~~k~~lVTGas~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~----------------~~~~~~~~~~D 84 (281)
T 3v2h_A 21 QSMMTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAGL----------------SSGTVLHHPAD 84 (281)
T ss_dssp -CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEECCCCHHHHHHHHHHHHTT----------------CSSCEEEECCC
T ss_pred hccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHhhc----------------cCCcEEEEeCC
Confidence 4678999999999999999999999999999999999 566676666666431 24678999999
Q ss_pred CCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeec
Q 010380 252 VCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD 331 (512)
Q Consensus 252 ltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vS 331 (512)
++|+++++++++++.+++|++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|.|+++ +.|+||++|
T Consensus 85 v~d~~~v~~~~~~~~~~~g~iD~lv~nAg~~~-~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~is 162 (281)
T 3v2h_A 85 MTKPSEIADMMAMVADRFGGADILVNNAGVQF-VEKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKKK-GWGRIINIA 162 (281)
T ss_dssp TTCHHHHHHHHHHHHHHTSSCSEEEECCCCCC-CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHCCCCCEEEECCCCCC-CCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCCEEEEEC
Confidence 99999999999999999999999999999987 6788999999999999999999999999999999886 578999999
Q ss_pred CCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHH------H
Q 010380 332 GAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPE------T 405 (512)
Q Consensus 332 S~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe------~ 405 (512)
|. ++..+.++...|++||+|+++|+++|+.|++++||+||+|+||+|+|++............ . ..++ .
T Consensus 163 S~-~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~~~~~-~---~~~~~~~~~~~ 237 (281)
T 3v2h_A 163 SA-HGLVASPFKSAYVAAKHGIMGLTKTVALEVAESGVTVNSICPGYVLTPLVEKQIPDQARTR-G---ITEEQVINEVM 237 (281)
T ss_dssp CG-GGTSCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC------------------------------
T ss_pred Cc-ccccCCCCchHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEECCCCcCcchhhhcchhhhhc-C---CCHHHHHHHHH
Confidence 98 6788889999999999999999999999999999999999999999999754322111000 0 0111 1
Q ss_pred HHHHhccccccchhhhhhhhhcCChHHHHHHHHHHhccCccc
Q 010380 406 VARTLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWF 447 (512)
Q Consensus 406 vA~~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~ 447 (512)
....+++++..|+|++.++.||+++...+.++..+..||+|.
T Consensus 238 ~~~~p~~r~~~~edvA~~v~~L~s~~a~~itG~~i~vdGG~~ 279 (281)
T 3v2h_A 238 LKGQPTKKFITVEQVASLALYLAGDDAAQITGTHVSMDGGWT 279 (281)
T ss_dssp --CCTTCSCBCHHHHHHHHHHHHSSGGGGCCSCEEEESTTGG
T ss_pred HhcCCCCCccCHHHHHHHHHHHcCCCcCCCCCcEEEECCCcc
Confidence 223567889999999999999999988777888888887763
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-41 Score=336.10 Aligned_cols=250 Identities=24% Similarity=0.302 Sum_probs=210.7
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
.++++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+ .+.++.++.||+
T Consensus 20 ~m~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~-----------------~~~~~~~~~~Dv 82 (279)
T 3sju_A 20 HMSRPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRA-----------------AGHDVDGSSCDV 82 (279)
T ss_dssp -----CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHT-----------------TTCCEEEEECCT
T ss_pred cccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-----------------cCCcEEEEECCC
Confidence 356899999999999999999999999999999999999998888887754 356799999999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHH--HHHhCCCCCeEEee
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMR--VMRDQPKGGHIFNM 330 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp--~m~~~~~~g~IV~v 330 (512)
+|+++++++++++.+++|++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++| .|+++ +.|+||++
T Consensus 83 ~d~~~v~~~~~~~~~~~g~id~lv~nAg~~~-~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~-~~g~iV~i 160 (279)
T 3sju_A 83 TSTDEVHAAVAAAVERFGPIGILVNSAGRNG-GGETADLDDALWADVLDTNLTGVFRVTREVLRAGGMREA-GWGRIVNI 160 (279)
T ss_dssp TCHHHHHHHHHHHHHHHCSCCEEEECCCCCC-CSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSSHHHH-TCEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEECCCCCC-CCChhhCCHHHHHHHHHHHhHHHHHHHHHHhchhhHhhc-CCcEEEEE
Confidence 9999999999999999999999999999987 68889999999999999999999999999999 57765 56899999
Q ss_pred cCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCH-----HH
Q 010380 331 DGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELP-----ET 405 (512)
Q Consensus 331 SS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~p-----e~ 405 (512)
||. ++..+.++...|++||+|+++|+++|+.|++++||+||+|+||+|+|+|......... ......+ ..
T Consensus 161 sS~-~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~----~~~~~~~~~~~~~~ 235 (279)
T 3sju_A 161 AST-GGKQGVMYAAPYTASKHGVVGFTKSVGFELAKTGITVNAVCPGYVETPMAERVREGYA----RHWGVTEQEVHERF 235 (279)
T ss_dssp CCG-GGTSCCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEESSBCSHHHHHHHHSCC----SSSCCCHHHHHHHH
T ss_pred CCh-hhccCCCCChhHHHHHHHHHHHHHHHHHHHHhhCcEEEEEeeCcccchHHHHHHhhhh----hcccCChHHHHHHH
Confidence 998 6788889999999999999999999999999999999999999999998642110000 0000011 11
Q ss_pred HHHHhccccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 406 VARTLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 406 vA~~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
....+++++..|+|+++++.||+++...+.++..+..||++
T Consensus 236 ~~~~p~~r~~~pedvA~~v~~L~s~~a~~itG~~i~vdGG~ 276 (279)
T 3sju_A 236 NAKIPLGRYSTPEEVAGLVGYLVTDAAASITAQALNVCGGL 276 (279)
T ss_dssp HTTCTTSSCBCHHHHHHHHHHHTSSGGGGCCSCEEEESTTC
T ss_pred HhcCCCCCCCCHHHHHHHHHHHhCccccCcCCcEEEECCCc
Confidence 22346788999999999999999998877778777777776
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-40 Score=332.05 Aligned_cols=249 Identities=22% Similarity=0.329 Sum_probs=212.7
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
.++++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++ +.++.++.+|+
T Consensus 25 ~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~--------------------~~~~~~~~~Dv 84 (277)
T 3gvc_A 25 PDLAGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKI--------------------GCGAAACRVDV 84 (277)
T ss_dssp --CTTCEEEETTTTSTHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH--------------------CSSCEEEECCT
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc--------------------CCcceEEEecC
Confidence 4688999999999999999999999999999999999998877666554 24678899999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|+++++++++++.+++|++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|.|+++ +.|+||++||
T Consensus 85 ~d~~~v~~~~~~~~~~~g~iD~lvnnAg~~~-~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~Iv~isS 162 (277)
T 3gvc_A 85 SDEQQIIAMVDACVAAFGGVDKLVANAGVVH-LASLIDTTVEDFDRVIAINLRGAWLCTKHAAPRMIER-GGGAIVNLSS 162 (277)
T ss_dssp TCHHHHHHHHHHHHHHHSSCCEEEECCCCCC-CBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCEEEEEECC
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCCCC-CCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEEcc
Confidence 9999999999999999999999999999986 6788999999999999999999999999999999987 5799999999
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhcc
Q 010380 333 AGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVP 412 (512)
Q Consensus 333 ~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~ 412 (512)
. ++..+.++...|++||+|+++|+++++.|++++||+||+|+||+|+||+........... ......+.....+++
T Consensus 163 ~-~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 238 (277)
T 3gvc_A 163 L-AGQVAVGGTGAYGMSKAGIIQLSRITAAELRSSGIRSNTLLPAFVDTPMQQTAMAMFDGA---LGAGGARSMIARLQG 238 (277)
T ss_dssp G-GGTSCCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHTCC---------CCHHHHHHHHHS
T ss_pred h-hhccCCCCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCccCchHHHhhhcchhh---HHHHhhhhhhhcccc
Confidence 8 678888999999999999999999999999999999999999999999863211100000 001112333356778
Q ss_pred ccccchhhhhhhhhcCChHHHHHHHHHHhccCccc
Q 010380 413 RIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWF 447 (512)
Q Consensus 413 r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~ 447 (512)
++..|+|+++++.||+++...+.++..+..||++.
T Consensus 239 r~~~pedvA~~v~~L~s~~a~~itG~~i~vdGG~~ 273 (277)
T 3gvc_A 239 RMAAPEEMAGIVVFLLSDDASMITGTTQIADGGTI 273 (277)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred CCCCHHHHHHHHHHHcCCccCCccCcEEEECCcch
Confidence 99999999999999999988787888888887763
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-40 Score=330.75 Aligned_cols=246 Identities=22% Similarity=0.306 Sum_probs=196.9
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEc-ChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASR-SSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R-~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
++.+|++|||||++|||+++|++|+++|++|++++| +.+.++++.+++.+ .+.++.++.||+
T Consensus 26 ~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~Dv 88 (280)
T 4da9_A 26 QKARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSG-----------------LGARVIFLRADL 88 (280)
T ss_dssp CCCCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHH-----------------TTCCEEEEECCT
T ss_pred ccCCCEEEEecCCCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHh-----------------cCCcEEEEEecC
Confidence 478999999999999999999999999999999995 77777777777755 456899999999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCC-CCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCC--CCCeEEe
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNK-GFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQP--KGGHIFN 329 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~-~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~--~~g~IV~ 329 (512)
+|+++++++++++.+++|+||+||||||+.. ...++.+.+.++|++++++|+.|+++++++++|.|++++ ..|+||+
T Consensus 89 ~d~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~g~Iv~ 168 (280)
T 4da9_A 89 ADLSSHQATVDAVVAEFGRIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRGTVFFTQAVLKAMLASDARASRSIIN 168 (280)
T ss_dssp TSGGGHHHHHHHHHHHHSCCCEEEEECC------CCGGGCCHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCCEEEE
Confidence 9999999999999999999999999999832 256788999999999999999999999999999998752 2689999
Q ss_pred ecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHH-H
Q 010380 330 MDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVA-R 408 (512)
Q Consensus 330 vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA-~ 408 (512)
+||. ++..+.++...|++||+|+++|+++|+.|++++||+||+|+||+|+|++......... ..... .
T Consensus 169 isS~-~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~----------~~~~~~~ 237 (280)
T 4da9_A 169 ITSV-SAVMTSPERLDYCMSKAGLAAFSQGLALRLAETGIAVFEVRPGIIRSDMTAAVSGKYD----------GLIESGL 237 (280)
T ss_dssp ECCC--------CCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC----------------------------
T ss_pred Ecch-hhccCCCCccHHHHHHHHHHHHHHHHHHHHHHhCcEEEEEeecCCcCCchhhcchhHH----------HHHhhcC
Confidence 9998 6778889999999999999999999999999999999999999999998754221110 11111 4
Q ss_pred HhccccccchhhhhhhhhcCChHHHHHHHHHHhccCccc
Q 010380 409 TLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWF 447 (512)
Q Consensus 409 ~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~ 447 (512)
.+++++..|+|+++++.||+++...+.++..+..||++.
T Consensus 238 ~p~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG~~ 276 (280)
T 4da9_A 238 VPMRRWGEPEDIGNIVAGLAGGQFGFATGSVIQADGGLS 276 (280)
T ss_dssp ----CCBCHHHHHHHHHHHHTSTTGGGTTCEEEESTTCC
T ss_pred CCcCCcCCHHHHHHHHHHHhCccccCCCCCEEEECCCcc
Confidence 577899999999999999999988888888888888764
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-40 Score=336.10 Aligned_cols=249 Identities=21% Similarity=0.283 Sum_probs=216.4
Q ss_pred cCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEcc
Q 010380 172 HCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACD 251 (512)
Q Consensus 172 ~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~D 251 (512)
.+++++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+. ...++.++.||
T Consensus 36 m~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~----------------~~~~~~~~~~D 99 (293)
T 3rih_A 36 MFDLSARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGEL----------------GAGNVIGVRLD 99 (293)
T ss_dssp TTCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHTTS----------------SSSCEEEEECC
T ss_pred ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhh----------------CCCcEEEEEEe
Confidence 45689999999999999999999999999999999999999988887777541 12578999999
Q ss_pred CCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeec
Q 010380 252 VCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD 331 (512)
Q Consensus 252 ltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vS 331 (512)
++|+++++++++++.+++|++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|.|+++ +.|+||++|
T Consensus 100 v~d~~~v~~~~~~~~~~~g~iD~lvnnAg~~~-~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~iV~is 177 (293)
T 3rih_A 100 VSDPGSCADAARTVVDAFGALDVVCANAGIFP-EARLDTMTPEQLSEVLDVNVKGTVYTVQACLAPLTAS-GRGRVILTS 177 (293)
T ss_dssp TTCHHHHHHHHHHHHHHHSCCCEEEECCCCCC-CCCTTTCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHH-SSCEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCCCCC-CCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCCEEEEEe
Confidence 99999999999999999999999999999987 6788999999999999999999999999999999886 578999999
Q ss_pred CCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhc
Q 010380 332 GAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLV 411 (512)
Q Consensus 332 S~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l 411 (512)
|..+...+.++...|++||+|+++|+++|+.|++++||+||+|+||+|.|++....... . ........++
T Consensus 178 S~~~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~----~------~~~~~~~~p~ 247 (293)
T 3rih_A 178 SITGPVTGYPGWSHYGASKAAQLGFMRTAAIELAPRGVTVNAILPGNILTEGLVDMGEE----Y------ISGMARSIPM 247 (293)
T ss_dssp CSBTTTBBCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHHTCHH----H------HHHHHTTSTT
T ss_pred ChhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhCeEEEEEecCCCcCcchhhccHH----H------HHHHHhcCCC
Confidence 98332477889999999999999999999999999999999999999999986432111 0 0112234567
Q ss_pred cccccchhhhhhhhhcCChHHHHHHHHHHhccCcccc
Q 010380 412 PRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWFD 448 (512)
Q Consensus 412 ~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~~ 448 (512)
+++..|+|++.++.||+++...+.++..+..||++..
T Consensus 248 ~r~~~p~dvA~~v~fL~s~~a~~itG~~i~vdGG~~~ 284 (293)
T 3rih_A 248 GMLGSPVDIGHLAAFLATDEAGYITGQAIVVDGGQVL 284 (293)
T ss_dssp SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTTTC
T ss_pred CCCCCHHHHHHHHHHHhCccccCCCCCEEEECCCccC
Confidence 8899999999999999999988888888888887644
|
| >3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-40 Score=330.60 Aligned_cols=253 Identities=19% Similarity=0.222 Sum_probs=209.6
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcC------------hhhHHHHHHHHHHHHhhhhhhcCCCCcccc
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRS------------SESVRMTVTELEENLKEGMMAAGGSSKKNL 240 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~------------~~~l~~~~~el~~~~~~~~~~~g~~~~~~~ 240 (512)
.++++|++|||||++|||+++|++|+++|++|++++|+ .+.+++..+++.+
T Consensus 6 ~~l~~k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 68 (281)
T 3s55_A 6 ADFEGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEK----------------- 68 (281)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHH-----------------
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCccccccccccccHHHHHHHHHHHHh-----------------
Confidence 36889999999999999999999999999999999997 4555555555544
Q ss_pred cCceEEEEEccCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHh
Q 010380 241 VHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRD 320 (512)
Q Consensus 241 ~g~~v~~v~~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~ 320 (512)
.+.++.++.+|++|+++++++++++.+++|++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|+|++
T Consensus 69 ~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~-~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~ 147 (281)
T 3s55_A 69 TGRRCISAKVDVKDRAALESFVAEAEDTLGGIDIAITNAGIST-IALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIK 147 (281)
T ss_dssp TTCCEEEEECCTTCHHHHHHHHHHHHHHHTCCCEEEECCCCCC-CCCTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHhcCCCCEEEECCCCCC-CCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4568999999999999999999999999999999999999987 678899999999999999999999999999999988
Q ss_pred CCCCCeEEeecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhh-hh
Q 010380 321 QPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFN-II 399 (512)
Q Consensus 321 ~~~~g~IV~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~-~~ 399 (512)
+ +.|+||++||. ++..+.++...|++||+|+++|+++|+.|++++||+||+|+||+|+|||....... ..+.. ..
T Consensus 148 ~-~~g~iv~isS~-~~~~~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~--~~~~~~~~ 223 (281)
T 3s55_A 148 R-NYGRIVTVSSM-LGHSANFAQASYVSSKWGVIGLTKCAAHDLVGYGITVNAVAPGNIETPMTHNDFVF--GTMRPDLE 223 (281)
T ss_dssp H-TCEEEEEECCG-GGGSCCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSTTTSSHHHH--HC------
T ss_pred c-CCCEEEEECCh-hhcCCCCCCchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccCccccchhhh--cccccccc
Confidence 6 57899999998 67788899999999999999999999999999999999999999999997531100 00000 00
Q ss_pred cCCHHHH------HHHhccccccchhhhhhhhhcCChHHHHHHHHHHhccCccc
Q 010380 400 CELPETV------ARTLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWF 447 (512)
Q Consensus 400 ~~~pe~v------A~~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~ 447 (512)
....+.. .....+++..|+|+++++.||+++...+.++..+..||++.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~p~dvA~~v~~L~s~~~~~itG~~i~vdgG~~ 277 (281)
T 3s55_A 224 KPTLKDVESVFASLHLQYAPFLKPEEVTRAVLFLVDEASSHITGTVLPIDAGAT 277 (281)
T ss_dssp -CCHHHHHHHHHHHCSSSCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred ccchhHHHHHHHhhhccCcCCCCHHHHHHHHHHHcCCcccCCCCCEEEECCCcc
Confidence 0011111 11122678899999999999999988777777777777763
|
| >3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-40 Score=326.68 Aligned_cols=244 Identities=20% Similarity=0.286 Sum_probs=211.7
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
.++++|++|||||++|||+++|++|+++|++|++++|+.+++++..+++ +.++.++.+|+
T Consensus 7 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~--------------------~~~~~~~~~Dv 66 (271)
T 3tzq_B 7 AELENKVAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGAAASV--------------------GRGAVHHVVDL 66 (271)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSCHHHHHHHH--------------------CTTCEEEECCT
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh--------------------CCCeEEEECCC
Confidence 4678999999999999999999999999999999999998887766554 24677899999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCC-CCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeec
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKG-FKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD 331 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~-~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vS 331 (512)
+|+++++++++++.+++|++|+||||||+..+ ..++.+.+.++|++++++|+.|+++++++++|+|+++ +.|+||++|
T Consensus 67 ~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~iv~is 145 (271)
T 3tzq_B 67 TNEVSVRALIDFTIDTFGRLDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLMCKYAIPRLISA-GGGAIVNIS 145 (271)
T ss_dssp TCHHHHHHHHHHHHHHHSCCCEEEECCCCCCTTCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCEEEEEC
Confidence 99999999999999999999999999998732 4567899999999999999999999999999999987 578999999
Q ss_pred CCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhc
Q 010380 332 GAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLV 411 (512)
Q Consensus 332 S~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l 411 (512)
|. ++..+.++...|++||+|+++|+++++.|++++||+||+|+||+|+|++....... ... .......++
T Consensus 146 S~-~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~---~~~------~~~~~~~~~ 215 (271)
T 3tzq_B 146 SA-TAHAAYDMSTAYACTKAAIETLTRYVATQYGRHGVRCNAIAPGLVRTPRLEVGLPQ---PIV------DIFATHHLA 215 (271)
T ss_dssp CG-GGTSBCSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTC---CH---HHH------HHHHTTSTT
T ss_pred CH-HHcCCCCCChHHHHHHHHHHHHHHHHHHHHhhcCEEEEEEEeCCCcCccccccCCH---HHH------HHHHhcCCC
Confidence 98 67888899999999999999999999999999999999999999999987532211 110 111233567
Q ss_pred cccccchhhhhhhhhcCChHHHHHHHHHHhccCccc
Q 010380 412 PRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWF 447 (512)
Q Consensus 412 ~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~ 447 (512)
+++..|+|+++++.||+++...+.++..+..||++.
T Consensus 216 ~r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG~~ 251 (271)
T 3tzq_B 216 GRIGEPHEIAELVCFLASDRAAFITGQVIAADSGLL 251 (271)
T ss_dssp SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTTT
T ss_pred CCCcCHHHHHHHHHHHhCcccCCcCCCEEEECCCcc
Confidence 889999999999999999998888888888888853
|
| >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-40 Score=331.42 Aligned_cols=241 Identities=22% Similarity=0.323 Sum_probs=202.3
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
+++++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++ +.++.++.+|+
T Consensus 23 ~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~--------------------~~~~~~~~~Dv 82 (266)
T 3grp_A 23 FKLTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADL--------------------GKDVFVFSANL 82 (266)
T ss_dssp TCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH--------------------CSSEEEEECCT
T ss_pred hccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--------------------CCceEEEEeec
Confidence 5689999999999999999999999999999999999988877665432 35788999999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|+++++++++++.++++++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|.|+++ +.|+||++||
T Consensus 83 ~d~~~v~~~~~~~~~~~g~iD~lvnnAg~~~-~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~Iv~isS 160 (266)
T 3grp_A 83 SDRKSIKQLAEVAEREMEGIDILVNNAGITR-DGLFVRMQDQDWDDVLAVNLTAASTLTRELIHSMMRR-RYGRIINITS 160 (266)
T ss_dssp TSHHHHHHHHHHHHHHHTSCCEEEECCCCC------CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECC
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCCCC-CCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCcEEEEECC
Confidence 9999999999999999999999999999987 5788899999999999999999999999999999876 5789999999
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhcc
Q 010380 333 AGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVP 412 (512)
Q Consensus 333 ~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~ 412 (512)
. ++..+.++...|++||+|+++|+++++.|++++||+||+|+||+|+|+|......... .......+++
T Consensus 161 ~-~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~~----------~~~~~~~p~~ 229 (266)
T 3grp_A 161 I-VGVVGNPGQTNYCAAKAGLIGFSKALAQEIASRNITVNCIAPGFIKSAMTDKLNEKQK----------EAIMAMIPMK 229 (266)
T ss_dssp C--------CHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSHHHHTCCHHHH----------HHHHTTCTTC
T ss_pred H-HHcCCCCCchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCcCCCchhhccCHHHH----------HHHHhcCCCC
Confidence 8 6778888999999999999999999999999999999999999999998754321110 1122345678
Q ss_pred ccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 413 RIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 413 r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
++..|+|++.++.||+++...+.++..+..||++
T Consensus 230 r~~~~edvA~~v~~L~s~~~~~itG~~i~vdGG~ 263 (266)
T 3grp_A 230 RMGIGEEIAFATVYLASDEAAYLTGQTLHINGGM 263 (266)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTC
T ss_pred CCcCHHHHHHHHHHHhCccccCccCCEEEECCCe
Confidence 9999999999999999998877777777777765
|
| >3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-40 Score=328.65 Aligned_cols=247 Identities=19% Similarity=0.257 Sum_probs=210.5
Q ss_pred ccCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEc
Q 010380 171 EHCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIAC 250 (512)
Q Consensus 171 ~~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~ 250 (512)
..+++++|++|||||++|||+++|++|+++|++|++++|+ +.+++..+++.+ .+.++.++.+
T Consensus 25 ~~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~-~~~~~~~~~~~~-----------------~~~~~~~~~~ 86 (273)
T 3uf0_A 25 GPFSLAGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRT-DGVKEVADEIAD-----------------GGGSAEAVVA 86 (273)
T ss_dssp CTTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS-THHHHHHHHHHT-----------------TTCEEEEEEC
T ss_pred cccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCH-HHHHHHHHHHHh-----------------cCCcEEEEEe
Confidence 3567899999999999999999999999999999999976 445556666543 4568999999
Q ss_pred cCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEee
Q 010380 251 DVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNM 330 (512)
Q Consensus 251 Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~v 330 (512)
|++|+++++++.+ ..++++++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|.|+++ +.|+||++
T Consensus 87 Dv~d~~~v~~~~~-~~~~~g~iD~lv~nAg~~~-~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~IV~i 163 (273)
T 3uf0_A 87 DLADLEGAANVAE-ELAATRRVDVLVNNAGIIA-RAPAEEVSLGRWREVLTVNLDAAWVLSRSFGTAMLAH-GSGRIVTI 163 (273)
T ss_dssp CTTCHHHHHHHHH-HHHHHSCCCEEEECCCCCC-CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEE
T ss_pred cCCCHHHHHHHHH-HHHhcCCCcEEEECCCCCC-CCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCEEEEE
Confidence 9999999999954 4566799999999999987 6889999999999999999999999999999999887 57899999
Q ss_pred cCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHh
Q 010380 331 DGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTL 410 (512)
Q Consensus 331 SS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~ 410 (512)
||. ++..+.++...|++||+|+++|+++|+.|++++||+||+|+||+|+|++....... ... ..+.....+
T Consensus 164 sS~-~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~--~~~------~~~~~~~~p 234 (273)
T 3uf0_A 164 ASM-LSFQGGRNVAAYAASKHAVVGLTRALASEWAGRGVGVNALAPGYVVTANTAALRAD--DER------AAEITARIP 234 (273)
T ss_dssp CCG-GGTSCCSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHTS--HHH------HHHHHHHST
T ss_pred cch-HhcCCCCCChhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCCchhhcccC--HHH------HHHHHhcCC
Confidence 998 67888899999999999999999999999999999999999999999986321100 000 123345567
Q ss_pred ccccccchhhhhhhhhcCChHHHHHHHHHHhccCccc
Q 010380 411 VPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWF 447 (512)
Q Consensus 411 l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~ 447 (512)
++++..|+|+++++.||+++...+.++..+..||++.
T Consensus 235 ~~r~~~pedva~~v~~L~s~~a~~itG~~i~vdGG~~ 271 (273)
T 3uf0_A 235 AGRWATPEDMVGPAVFLASDAASYVHGQVLAVDGGWL 271 (273)
T ss_dssp TSSCBCGGGGHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred CCCCCCHHHHHHHHHHHhCchhcCCcCCEEEECcCcc
Confidence 8899999999999999999988777787777777763
|
| >4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-40 Score=331.96 Aligned_cols=242 Identities=23% Similarity=0.379 Sum_probs=210.1
Q ss_pred cCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEc-ChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEc
Q 010380 172 HCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASR-SSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIAC 250 (512)
Q Consensus 172 ~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R-~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~ 250 (512)
.+++++|++|||||++|||+++|++|+++|++|++++| +.+.++++.+++.+ .+.++.++.+
T Consensus 23 ~~~l~~k~vlVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~ 85 (269)
T 4dmm_A 23 ALPLTDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAA-----------------AGGEAFAVKA 85 (269)
T ss_dssp -CTTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH-----------------TTCCEEEEEC
T ss_pred ccCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHh-----------------cCCcEEEEEC
Confidence 35689999999999999999999999999999999998 56667776666654 3567899999
Q ss_pred cCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEee
Q 010380 251 DVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNM 330 (512)
Q Consensus 251 Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~v 330 (512)
|++|+++++++++++.+++|++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|.|+++ +.|+||++
T Consensus 86 D~~d~~~v~~~~~~~~~~~g~id~lv~nAg~~~-~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~i 163 (269)
T 4dmm_A 86 DVSQESEVEALFAAVIERWGRLDVLVNNAGITR-DTLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQ-RSGRIINI 163 (269)
T ss_dssp CTTSHHHHHHHHHHHHHHHSCCCEEEECCCCCC-CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCC-CCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCcEEEEE
Confidence 999999999999999999999999999999987 6788999999999999999999999999999999876 57899999
Q ss_pred cCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHh
Q 010380 331 DGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTL 410 (512)
Q Consensus 331 SS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~ 410 (512)
||. ++..+.++...|++||+|+++|+++|+.|++++||+||+|+||+|+|+|..... . .......+
T Consensus 164 sS~-~~~~~~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~---~----------~~~~~~~p 229 (269)
T 4dmm_A 164 ASV-VGEMGNPGQANYSAAKAGVIGLTKTVAKELASRGITVNAVAPGFIATDMTSELA---A----------EKLLEVIP 229 (269)
T ss_dssp CCH-HHHHCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBTTSCSCHHH---H----------HHHGGGCT
T ss_pred Cch-hhcCCCCCchhHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEECCCcCccccccc---H----------HHHHhcCC
Confidence 997 567778899999999999999999999999999999999999999999863211 0 11122346
Q ss_pred ccccccchhhhhhhhhcCCh-HHHHHHHHHHhccCcc
Q 010380 411 VPRIRVVKGSGKAINYLTPP-RILLALVTAWLRRGRW 446 (512)
Q Consensus 411 l~r~~~~~~va~~v~~L~s~-~~~~~~~~~~~~~g~~ 446 (512)
++++..|+|+++++.||+++ ...+.++..+..||++
T Consensus 230 ~~r~~~~~dvA~~v~~l~s~~~~~~itG~~i~vdGG~ 266 (269)
T 4dmm_A 230 LGRYGEAAEVAGVVRFLAADPAAAYITGQVINIDGGL 266 (269)
T ss_dssp TSSCBCHHHHHHHHHHHHHCGGGGGCCSCEEEESTTS
T ss_pred CCCCCCHHHHHHHHHHHhCCcccCCCcCCEEEECCCe
Confidence 78899999999999999986 6666677777777765
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-40 Score=326.68 Aligned_cols=243 Identities=20% Similarity=0.310 Sum_probs=210.6
Q ss_pred cCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcC-hhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEc
Q 010380 172 HCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRS-SESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIAC 250 (512)
Q Consensus 172 ~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~-~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~ 250 (512)
.+++++|++|||||++|||+++|++|+++|++|++++++ .+.++++.+++.+ .+.++.++.+
T Consensus 26 ~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~-----------------~~~~~~~~~~ 88 (271)
T 3v2g_A 26 SISLAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQ-----------------AGGRAVAIRA 88 (271)
T ss_dssp TTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH-----------------TTCCEEEEEC
T ss_pred ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHh-----------------cCCcEEEEEC
Confidence 357899999999999999999999999999999999665 4666666666654 4568899999
Q ss_pred cCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEee
Q 010380 251 DVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNM 330 (512)
Q Consensus 251 Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~v 330 (512)
|++|+++++++++++.+++|++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|.|++ .|+||++
T Consensus 89 Dv~d~~~v~~~~~~~~~~~g~iD~lvnnAg~~~-~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~---~g~iv~i 164 (271)
T 3v2g_A 89 DNRDAEAIEQAIRETVEALGGLDILVNSAGIWH-SAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGD---GGRIITI 164 (271)
T ss_dssp CTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCC-CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCT---TCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHcCCCcEEEECCCCCC-CCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhc---CCEEEEE
Confidence 999999999999999999999999999999987 688999999999999999999999999999999964 5899999
Q ss_pred cCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHh
Q 010380 331 DGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTL 410 (512)
Q Consensus 331 SS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~ 410 (512)
||..+...+.++...|++||+|+++|+++|+.|++++||+||+|+||+|+|++....... ......+.+
T Consensus 165 sS~~~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~~-----------~~~~~~~~~ 233 (271)
T 3v2g_A 165 GSNLAELVPWPGISLYSASKAALAGLTKGLARDLGPRGITVNIVHPGSTDTDMNPADGDH-----------AEAQRERIA 233 (271)
T ss_dssp CCGGGTCCCSTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSSSSCSSCSS-----------HHHHHHTCT
T ss_pred eChhhccCCCCCchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCCCcCCcccccchh-----------HHHHHhcCC
Confidence 987444555788999999999999999999999999999999999999999997542111 112234456
Q ss_pred ccccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 411 VPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 411 l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
++++..|+|+++++.||+++...+.++..+..||++
T Consensus 234 ~~r~~~pedvA~~v~fL~s~~~~~itG~~i~vdGG~ 269 (271)
T 3v2g_A 234 TGSYGEPQDIAGLVAWLAGPQGKFVTGASLTIDGGA 269 (271)
T ss_dssp TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred CCCCCCHHHHHHHHHHHhCcccCCccCCEEEeCcCc
Confidence 788999999999999999998877777777777765
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-40 Score=331.75 Aligned_cols=243 Identities=24% Similarity=0.390 Sum_probs=201.5
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEE-EcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEcc
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVA-SRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACD 251 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~-~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~D 251 (512)
+++++|++|||||++|||+++|++|+++|++|+++ .|+.+.++++.+++.+ .+.++.++.||
T Consensus 23 m~~~~k~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~D 85 (267)
T 3u5t_A 23 MMETNKVAIVTGASRGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEA-----------------AGGKALTAQAD 85 (267)
T ss_dssp ----CCEEEEESCSSHHHHHHHHHHHHHTCEEEEEESSCSHHHHHHHHHHHH-----------------TTCCEEEEECC
T ss_pred cccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHh-----------------cCCeEEEEEcC
Confidence 56789999999999999999999999999999988 5566677777666655 45678999999
Q ss_pred CCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeec
Q 010380 252 VCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD 331 (512)
Q Consensus 252 ltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vS 331 (512)
++|+++++++++++.+++|++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|.|++ +|+||++|
T Consensus 86 l~~~~~v~~~~~~~~~~~g~iD~lvnnAG~~~-~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~---~g~iv~is 161 (267)
T 3u5t_A 86 VSDPAAVRRLFATAEEAFGGVDVLVNNAGIMP-LTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRV---GGRIINMS 161 (267)
T ss_dssp TTCHHHHHHHHHHHHHHHSCEEEEEECCCCCC-CCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCCCCC-CCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh---CCeEEEEe
Confidence 99999999999999999999999999999986 678999999999999999999999999999999965 48999999
Q ss_pred CCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhc
Q 010380 332 GAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLV 411 (512)
Q Consensus 332 S~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l 411 (512)
|. ++..+.|+...|++||+|+++|+++|+.|++++||+||+|+||+|+|+|.......... .......++
T Consensus 162 S~-~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~---------~~~~~~~p~ 231 (267)
T 3u5t_A 162 TS-QVGLLHPSYGIYAAAKAGVEAMTHVLSKELRGRDITVNAVAPGPTATDLFLEGKSDEVR---------DRFAKLAPL 231 (267)
T ss_dssp CT-HHHHCCTTCHHHHHHHHHHHHHHHHHHHHTTTSCCEEEEEEECCBC-----------CH---------HHHHTSSTT
T ss_pred Ch-hhccCCCCchHHHHHHHHHHHHHHHHHHHhhhhCCEEEEEEECCCcCccccccCCHHHH---------HHHHhcCCC
Confidence 87 56677889999999999999999999999999999999999999999997442211100 111223567
Q ss_pred cccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 412 PRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 412 ~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
+++..|+|+++++.||+++...+.++..+..||++
T Consensus 232 ~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG~ 266 (267)
T 3u5t_A 232 ERLGTPQDIAGAVAFLAGPDGAWVNGQVLRANGGI 266 (267)
T ss_dssp CSCBCHHHHHHHHHHHHSTTTTTCCSEEEEESSSC
T ss_pred CCCcCHHHHHHHHHHHhCccccCccCCEEEeCCCc
Confidence 88999999999999999998877777777777765
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-40 Score=330.04 Aligned_cols=253 Identities=17% Similarity=0.250 Sum_probs=203.1
Q ss_pred ccCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcC------------hhhHHHHHHHHHHHHhhhhhhcCCCCcc
Q 010380 171 EHCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRS------------SESVRMTVTELEENLKEGMMAAGGSSKK 238 (512)
Q Consensus 171 ~~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~------------~~~l~~~~~el~~~~~~~~~~~g~~~~~ 238 (512)
...++++|++|||||++|||+++|++|+++|++|++++|+ .+.+++..+++.+
T Consensus 7 ~~~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 71 (278)
T 3sx2_A 7 SEGPLTGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVED--------------- 71 (278)
T ss_dssp --CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHH---------------
T ss_pred CCCCCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHh---------------
Confidence 3457899999999999999999999999999999999987 6666666666544
Q ss_pred cccCceEEEEEccCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 010380 239 NLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVM 318 (512)
Q Consensus 239 ~~~g~~v~~v~~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m 318 (512)
.+.++.++.||++|+++++++++++.+++|+||+||||||+.. ... +.++|++++++|+.|+++++++++|+|
T Consensus 72 --~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~-~~~----~~~~~~~~~~~N~~g~~~l~~~~~~~~ 144 (278)
T 3sx2_A 72 --IGSRIVARQADVRDRESLSAALQAGLDELGRLDIVVANAGIAP-MSA----GDDGWHDVIDVNLTGVYHTIKVAIPTL 144 (278)
T ss_dssp --HTCCEEEEECCTTCHHHHHHHHHHHHHHHCCCCEEEECCCCCC-CSS----THHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred --cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCC-CCC----CHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3568999999999999999999999999999999999999865 222 589999999999999999999999999
Q ss_pred HhCCCCCeEEeecCCCCCCCCC----CCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhh
Q 010380 319 RDQPKGGHIFNMDGAGSGGSST----PLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQ 394 (512)
Q Consensus 319 ~~~~~~g~IV~vSS~~a~~~~~----p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~ 394 (512)
++++.+|+||++||. ++..+. ++...|++||+|+++|+++|+.|++++||+||+|+||+|+|+|...........
T Consensus 145 ~~~~~~g~iv~isS~-~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~ 223 (278)
T 3sx2_A 145 VKQGTGGSIVLISSS-AGLAGVGSADPGSVGYVAAKHGVVGLMRVYANLLAGQMIRVNSIHPSGVETPMINNEFTREWLA 223 (278)
T ss_dssp HHHCSCEEEEEECCG-GGTSCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBSSTTTSSHHHHHHHH
T ss_pred HhCCCCcEEEEEccH-HhcCCCccCCCCchHhHHHHHHHHHHHHHHHHHHhccCcEEEEEecCCccCccchhhhHHHHHh
Confidence 887557899999997 555554 677889999999999999999999999999999999999999975321110000
Q ss_pred hhhhhcCCHHHHH-HHhccccccchhhhhhhhhcCChHHHHHHHHHHhccCccc
Q 010380 395 MFNIICELPETVA-RTLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWF 447 (512)
Q Consensus 395 ~~~~~~~~pe~vA-~~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~ 447 (512)
........+.... ..+ .++..|+|+++++.||+++...+.++..+..||++.
T Consensus 224 ~~~~~~~~~~~~~~~~p-~~~~~p~dvA~~v~~l~s~~~~~itG~~i~vdGG~~ 276 (278)
T 3sx2_A 224 KMAAATDTPGAMGNAMP-VEVLAPEDVANAVAWLVSDQARYITGVTLPVDAGFL 276 (278)
T ss_dssp HHHHHCC--CTTSCSSS-CSSBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTTT
T ss_pred hccchhhhhhhhhhhcC-cCcCCHHHHHHHHHHHhCcccccccCCEEeECCCcc
Confidence 0000000000011 112 567889999999999999988777788887777764
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-39 Score=321.07 Aligned_cols=237 Identities=15% Similarity=0.218 Sum_probs=207.7
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
..+++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+. .+.++.++.+|+
T Consensus 8 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~----------------~~~~~~~~~~D~ 71 (252)
T 3f1l_A 8 DLLNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEE----------------TGRQPQWFILDL 71 (252)
T ss_dssp TTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH----------------HSCCCEEEECCT
T ss_pred cccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhh----------------cCCCceEEEEec
Confidence 4689999999999999999999999999999999999999998888887653 223678899999
Q ss_pred --CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEee
Q 010380 253 --CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNM 330 (512)
Q Consensus 253 --td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~v 330 (512)
+|+++++++++++.+++|++|+||||||+.....++.+.+.++|++++++|+.|+++++++++|+|+++ +.|+||++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~-~~g~iv~i 150 (252)
T 3f1l_A 72 LTCTSENCQQLAQRIAVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKS-DAGSLVFT 150 (252)
T ss_dssp TTCCHHHHHHHHHHHHHHCSCCSEEEECCCCCCCCSCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTS-SSCEEEEE
T ss_pred ccCCHHHHHHHHHHHHHhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHC-CCCEEEEE
Confidence 999999999999999999999999999986545788999999999999999999999999999999887 57899999
Q ss_pred cCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHh
Q 010380 331 DGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTL 410 (512)
Q Consensus 331 SS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~ 410 (512)
||. ++..+.++...|++||+|+++|+++|+.|+++. |+||+|+||+|+|+|...... ...
T Consensus 151 sS~-~~~~~~~~~~~Y~asK~a~~~l~~~la~e~~~~-irvn~v~PG~v~t~~~~~~~~----------~~~-------- 210 (252)
T 3f1l_A 151 SSS-VGRQGRANWGAYAASKFATEGMMQVLADEYQQR-LRVNCINPGGTRTAMRASAFP----------TED-------- 210 (252)
T ss_dssp CCG-GGTSCCTTCHHHHHHHHHHHHHHHHHHHHTTTT-CEEEEEECCSBSSHHHHHHCT----------TCC--------
T ss_pred CCh-hhccCCCCCchhHHHHHHHHHHHHHHHHHhcCC-cEEEEEecCcccCchhhhhCC----------ccc--------
Confidence 998 677888999999999999999999999999987 999999999999998532110 001
Q ss_pred ccccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 411 VPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 411 l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
..++..|+|++..+.||+++...+.++..+..||++
T Consensus 211 ~~~~~~p~dva~~~~~L~s~~~~~itG~~i~vdgG~ 246 (252)
T 3f1l_A 211 PQKLKTPADIMPLYLWLMGDDSRRKTGMTFDAQPGR 246 (252)
T ss_dssp GGGSBCTGGGHHHHHHHHSGGGTTCCSCEEESSCC-
T ss_pred hhccCCHHHHHHHHHHHcCccccCCCCCEEEeCCCc
Confidence 135678999999999999998877777777777765
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-40 Score=326.11 Aligned_cols=244 Identities=18% Similarity=0.280 Sum_probs=209.1
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
++++|++|||||++|||+++|++|+++|++|++++|++++++++.+++ +.++.++.+|++
T Consensus 5 ~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~--------------------~~~~~~~~~Dv~ 64 (255)
T 4eso_A 5 NYQGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEF--------------------GPRVHALRSDIA 64 (255)
T ss_dssp TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH--------------------GGGEEEEECCTT
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--------------------CCcceEEEccCC
Confidence 478999999999999999999999999999999999988877665553 247889999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
|+++++++++++.+.++++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|+|++ +|+||++||.
T Consensus 65 ~~~~v~~~~~~~~~~~g~id~lv~nAg~~~-~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~---~g~iv~isS~ 140 (255)
T 4eso_A 65 DLNEIAVLGAAAGQTLGAIDLLHINAGVSE-LEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIRE---GGSIVFTSSV 140 (255)
T ss_dssp CHHHHHHHHHHHHHHHSSEEEEEECCCCCC-CBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEE---EEEEEEECCG
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCCCCC-CCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhc---CCEEEEECCh
Confidence 999999999999999999999999999987 688999999999999999999999999999999965 4899999998
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhccc
Q 010380 334 GSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPR 413 (512)
Q Consensus 334 ~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~r 413 (512)
++..+.|+...|++||+|+++|+++|+.|++++||+||+|+||+|+|++......... ..... ........++++
T Consensus 141 -~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~-~~~~~---~~~~~~~~p~~r 215 (255)
T 4eso_A 141 -ADEGGHPGMSVYSASKAALVSFASVLAAELLPRGIRVNSVSPGFIDTPTKGVAGITEA-ERAEF---KTLGDNITPMKR 215 (255)
T ss_dssp -GGSSBCTTBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEEECSBCCSSTTCTTSCHH-HHHHH---HHHHHHHSTTSS
T ss_pred -hhcCCCCCchHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEecCcccCcccccccCChh-hHHHH---HHHHhccCCCCC
Confidence 6788889999999999999999999999999999999999999999998653211110 00000 011233467889
Q ss_pred cccchhhhhhhhhcCChHHHHHHHHHHhccCccc
Q 010380 414 IRVVKGSGKAINYLTPPRILLALVTAWLRRGRWF 447 (512)
Q Consensus 414 ~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~ 447 (512)
+..|+|+++++.||+++ ..+.++..+..||++.
T Consensus 216 ~~~pedvA~~v~~L~s~-~~~itG~~i~vdGG~~ 248 (255)
T 4eso_A 216 NGTADEVARAVLFLAFE-ATFTTGAKLAVDGGLG 248 (255)
T ss_dssp CBCHHHHHHHHHHHHHT-CTTCCSCEEEESTTTT
T ss_pred CcCHHHHHHHHHHHcCc-CcCccCCEEEECCCcc
Confidence 99999999999999987 6667777777777763
|
| >3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-39 Score=331.75 Aligned_cols=253 Identities=24% Similarity=0.346 Sum_probs=211.5
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcC------------hhhHHHHHHHHHHHHhhhhhhcCCCCccccc
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRS------------SESVRMTVTELEENLKEGMMAAGGSSKKNLV 241 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~------------~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~ 241 (512)
++++|++|||||++|||+++|++|+++|++|++++|+ .+++++..+++.+ .
T Consensus 43 ~l~gk~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~ 105 (317)
T 3oec_A 43 RLQGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEE-----------------Q 105 (317)
T ss_dssp TTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHH-----------------T
T ss_pred ccCCCEEEEeCCCcHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHh-----------------c
Confidence 5789999999999999999999999999999999886 5666666665544 4
Q ss_pred CceEEEEEccCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhC
Q 010380 242 HAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQ 321 (512)
Q Consensus 242 g~~v~~v~~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~ 321 (512)
+.++.++.+|++|+++++++++++.+++|+||+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|.|+++
T Consensus 106 ~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~-~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~ 184 (317)
T 3oec_A 106 GRRIIARQADVRDLASLQAVVDEALAEFGHIDILVSNVGISN-QGEVVSLTDQQWSDILQTNLIGAWHACRAVLPSMIER 184 (317)
T ss_dssp TCCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCC-CBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCC-CCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc
Confidence 568999999999999999999999999999999999999987 6788999999999999999999999999999999987
Q ss_pred CCCCeEEeecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhh-c
Q 010380 322 PKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNII-C 400 (512)
Q Consensus 322 ~~~g~IV~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~-~ 400 (512)
+.+|+||++||. ++..+.++...|++||+|+++|+++|+.|++++||+||+|+||+|+|++...... ...+.... .
T Consensus 185 ~~~g~Iv~isS~-~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~--~~~~~~~~~~ 261 (317)
T 3oec_A 185 GQGGSVIFVSST-VGLRGAPGQSHYAASKHGVQGLMLSLANEVGRHNIRVNSVNPGAVNTEMALNEKL--LKMFLPHLEN 261 (317)
T ss_dssp CSCEEEEEECCG-GGSSCCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHHHHCHHH--HHHHCTTCSS
T ss_pred CCCCEEEEECcH-HhcCCCCCCcchHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcccCccccchhh--hhhhhhhccc
Confidence 557999999998 6788889999999999999999999999999999999999999999998642110 00010100 1
Q ss_pred CCHHHHHHH-----hc-cccccchhhhhhhhhcCChHHHHHHHHHHhccCccc
Q 010380 401 ELPETVART-----LV-PRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWF 447 (512)
Q Consensus 401 ~~pe~vA~~-----~l-~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~ 447 (512)
...+..... .+ .++..|+|+++++.||+++...+.++..+..||++.
T Consensus 262 ~~~~~~~~~~~~~~~~p~~~~~pedvA~av~fL~s~~a~~itG~~i~vdGG~~ 314 (317)
T 3oec_A 262 PTREDAAELFSQLTLLPIPWVEPEDVSNAVAWLASDEARYIHGAAIPVDGGQL 314 (317)
T ss_dssp CCHHHHHHHHTTTCSSSSSSBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTGG
T ss_pred cchhHHHHHHhhhccCCCCCCCHHHHHHHHHHHcCCcccCCCCCEEEECcchh
Confidence 112222221 11 456789999999999999998888888888888764
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-39 Score=324.17 Aligned_cols=250 Identities=22% Similarity=0.348 Sum_probs=208.7
Q ss_pred ccCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEc
Q 010380 171 EHCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIAC 250 (512)
Q Consensus 171 ~~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~ 250 (512)
..+++++|++|||||++|||+++|++|+++|++|++++|++++++++.+++.+ .+.++.++.+
T Consensus 15 ~~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-----------------~~~~~~~~~~ 77 (273)
T 1ae1_A 15 GRWSLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWRE-----------------KGLNVEGSVC 77 (273)
T ss_dssp -CCCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-----------------TTCCEEEEEC
T ss_pred ccCCCCCCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-----------------cCCceEEEEC
Confidence 34678999999999999999999999999999999999999888877777654 3457889999
Q ss_pred cCCChhhHHHHHHHHHHHc-CCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEe
Q 010380 251 DVCEPADVQKLSNFAVNEF-GSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFN 329 (512)
Q Consensus 251 Dltd~~sv~~~~~~i~~~~-g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~ 329 (512)
|++|+++++++++++.+.+ +++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|.|+++ +.|+||+
T Consensus 78 D~~~~~~~~~~~~~~~~~~~g~id~lv~nAg~~~-~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~-~~g~iv~ 155 (273)
T 1ae1_A 78 DLLSRTERDKLMQTVAHVFDGKLNILVNNAGVVI-HKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKAS-QNGNVIF 155 (273)
T ss_dssp CTTCHHHHHHHHHHHHHHTTSCCCEEEECCCCCC-CCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TSEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCcEEEECCCCCC-CCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCcEEEE
Confidence 9999999999999999999 99999999999876 5788899999999999999999999999999999876 5689999
Q ss_pred ecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchh--hhhhhhhhcCCHHHHH
Q 010380 330 MDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQ--NKQMFNIICELPETVA 407 (512)
Q Consensus 330 vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~--~~~~~~~~~~~pe~vA 407 (512)
+||. ++..+.++...|++||+|+++|+++++.|++++||+||+|+||+|+|++........ .... ......
T Consensus 156 isS~-~~~~~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~------~~~~~~ 228 (273)
T 1ae1_A 156 LSSI-AGFSALPSVSLYSASKGAINQMTKSLACEWAKDNIRVNSVAPGVILTPLVETAIKKNPHQKEE------IDNFIV 228 (273)
T ss_dssp ECCG-GGTSCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC-------------CHHH------HHHHHH
T ss_pred EcCH-hhcCCCCCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCchhhhhhhcccCcHHH------HHHHHh
Confidence 9998 677788899999999999999999999999999999999999999999864321100 0000 012233
Q ss_pred HHhccccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 408 RTLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 408 ~~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
..+++++..|+|+++++.||+++...+.++..+..||++
T Consensus 229 ~~p~~r~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdGG~ 267 (273)
T 1ae1_A 229 KTPMGRAGKPQEVSALIAFLCFPAASYITGQIIWADGGF 267 (273)
T ss_dssp HSTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred cCCCCCCcCHHHHHHHHHHHhCccccCcCCCEEEECCCc
Confidence 456788999999999999999988766677777777765
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-41 Score=332.18 Aligned_cols=249 Identities=21% Similarity=0.306 Sum_probs=204.1
Q ss_pred cccCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcCh---hhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEE
Q 010380 170 EEHCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSS---ESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVA 246 (512)
Q Consensus 170 ~~~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~---~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~ 246 (512)
.+.+++++|++|||||++|||+++|++|+++|++|++++|+. +.++++.+++.+ .+.++.
T Consensus 4 ~~~~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~-----------------~~~~~~ 66 (262)
T 3ksu_A 4 TKYHDLKNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELED-----------------QGAKVA 66 (262)
T ss_dssp CCCSCCTTCEEEEETCSSHHHHHHHHHHTTSSCEEEEEESCGGGHHHHHHHHHHHHT-----------------TTCEEE
T ss_pred ccccCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecCccCHHHHHHHHHHHHh-----------------cCCcEE
Confidence 445789999999999999999999999999999999987753 455555555543 357899
Q ss_pred EEEccCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCe
Q 010380 247 GIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGH 326 (512)
Q Consensus 247 ~v~~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~ 326 (512)
++.||++|+++++++++++.+++|++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|+|+ +.|+
T Consensus 67 ~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnAg~~~-~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~---~~g~ 142 (262)
T 3ksu_A 67 LYQSDLSNEEEVAKLFDFAEKEFGKVDIAINTVGKVL-KKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMN---PNGH 142 (262)
T ss_dssp EEECCCCSHHHHHHHHHHHHHHHCSEEEEEECCCCCC-SSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEE---EEEE
T ss_pred EEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCC-CCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhc---CCCE
Confidence 9999999999999999999999999999999999987 57889999999999999999999999999999994 3589
Q ss_pred EEeecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHH
Q 010380 327 IFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETV 406 (512)
Q Consensus 327 IV~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~v 406 (512)
||++||. ++..+.++...|++||+|+++|+++|+.|++++||+||+|+||+|+|+|......... .....
T Consensus 143 iv~isS~-~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~---------~~~~~ 212 (262)
T 3ksu_A 143 IITIATS-LLAAYTGFYSTYAGNKAPVEHYTRAASKELMKQQISVNAIAPGPMDTSFFYGQETKES---------TAFHK 212 (262)
T ss_dssp EEEECCC-HHHHHHCCCCC-----CHHHHHHHHHHHHTTTTTCEEEEEEECCCCTHHHHTCC------------------
T ss_pred EEEEech-hhccCCCCCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeCCCcCccccccCchHH---------HHHHH
Confidence 9999987 5666778889999999999999999999999999999999999999998644221110 11223
Q ss_pred HHHhccccccchhhhhhhhhcCChHHHHHHHHHHhccCcccccc
Q 010380 407 ARTLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWFDDQ 450 (512)
Q Consensus 407 A~~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~~~~ 450 (512)
...+++++..|+|++.++.||+++ ..+.++..+..||++....
T Consensus 213 ~~~~~~r~~~pedvA~~v~~L~s~-~~~itG~~i~vdGg~~~~~ 255 (262)
T 3ksu_A 213 SQAMGNQLTKIEDIAPIIKFLTTD-GWWINGQTIFANGGYTTRE 255 (262)
T ss_dssp ---CCCCSCCGGGTHHHHHHHHTT-TTTCCSCEEEESTTCCCC-
T ss_pred hcCcccCCCCHHHHHHHHHHHcCC-CCCccCCEEEECCCccCCC
Confidence 446778999999999999999998 7778888888888875443
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-40 Score=320.05 Aligned_cols=244 Identities=21% Similarity=0.296 Sum_probs=213.6
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
|++++|+++||||++|||+++|++|+++|++|++++|++++++++.+++.+ .+.++.++.+|+
T Consensus 1 m~l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~-----------------~~~~~~~~~~D~ 63 (247)
T 3lyl_A 1 MSLNEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKE-----------------KGFKARGLVLNI 63 (247)
T ss_dssp CTTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHH-----------------TTCCEEEEECCT
T ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-----------------cCCceEEEEecC
Confidence 467899999999999999999999999999999999999998888887765 356899999999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|+++++++++++.++++++|+||||||+.. ..++.+.+.++|++++++|+.+++++++.++|.|.++ +.|+||++||
T Consensus 64 ~~~~~~~~~~~~~~~~~~~id~li~~Ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~g~iv~isS 141 (247)
T 3lyl_A 64 SDIESIQNFFAEIKAENLAIDILVNNAGITR-DNLMMRMSEDEWQSVINTNLSSIFRMSKECVRGMMKK-RWGRIISIGS 141 (247)
T ss_dssp TCHHHHHHHHHHHHHTTCCCSEEEECCCCCC-CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECC
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCCCC-CCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCeEEEEEcc
Confidence 9999999999999999999999999999987 6788899999999999999999999999999999876 5689999999
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhcc
Q 010380 333 AGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVP 412 (512)
Q Consensus 333 ~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~ 412 (512)
. .+..+.++...|++||+|+++|+++++.|++++||+||+|+||+|+|++.......... ......+.+
T Consensus 142 ~-~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~----------~~~~~~~~~ 210 (247)
T 3lyl_A 142 V-VGSAGNPGQTNYCAAKAGVIGFSKSLAYEVASRNITVNVVAPGFIATDMTDKLTDEQKS----------FIATKIPSG 210 (247)
T ss_dssp T-HHHHCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTTTSCHHHHH----------HHHTTSTTC
T ss_pred h-hhccCCCCcHHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEeeCcEecccchhccHHHHH----------HHhhcCCCC
Confidence 7 66778889999999999999999999999999999999999999999997553221111 112234567
Q ss_pred ccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 413 RIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 413 r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
++..|+|+++++.||+++...+.++..+..||++
T Consensus 211 ~~~~~~dva~~i~~l~s~~~~~~tG~~i~vdgG~ 244 (247)
T 3lyl_A 211 QIGEPKDIAAAVAFLASEEAKYITGQTLHVNGGM 244 (247)
T ss_dssp CCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTS
T ss_pred CCcCHHHHHHHHHHHhCCCcCCccCCEEEECCCE
Confidence 8899999999999999988766667667666665
|
| >3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-39 Score=326.40 Aligned_cols=252 Identities=22% Similarity=0.213 Sum_probs=204.9
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
|++++|++|||||++|||+++|++|+++|++|++++|+.++++++.++ .+.++.++.+|+
T Consensus 1 M~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~--------------------~~~~~~~~~~Dv 60 (281)
T 3zv4_A 1 MKLTGEVALITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVA--------------------HGGNAVGVVGDV 60 (281)
T ss_dssp CTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH--------------------TBTTEEEEECCT
T ss_pred CCcCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHH--------------------cCCcEEEEEcCC
Confidence 467899999999999999999999999999999999998877654433 245788999999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCc----CCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEE
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLL----QFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIF 328 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~----~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV 328 (512)
+|+++++++++++.+++|++|+||||||+.....++. +.+.++|++++++|+.|+++++++++|+|.++ +|+||
T Consensus 61 ~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~--~g~iv 138 (281)
T 3zv4_A 61 RSLQDQKRAAERCLAAFGKIDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKGYIHAVKACLPALVSS--RGSVV 138 (281)
T ss_dssp TCHHHHHHHHHHHHHHHSCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCCEEEECCCcCccccccccCChhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHhc--CCeEE
Confidence 9999999999999999999999999999865333333 44567899999999999999999999999875 48999
Q ss_pred eecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHH
Q 010380 329 NMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVAR 408 (512)
Q Consensus 329 ~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~ 408 (512)
++||. ++..+.++...|++||+|+++|+++|+.|+++. |+||+|+||+|+|+|.........................
T Consensus 139 ~isS~-~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~~-Irvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (281)
T 3zv4_A 139 FTISN-AGFYPNGGGPLYTATKHAVVGLVRQMAFELAPH-VRVNGVAPGGMNTDLRGPSSLGLSEQSISSVPLADMLKSV 216 (281)
T ss_dssp EECCG-GGTSSSSSCHHHHHHHHHHHHHHHHHHHHHTTT-SEEEEEEECSSCC--CCCTTCC--------CCHHHHHHHT
T ss_pred EEecc-hhccCCCCCchhHHHHHHHHHHHHHHHHHhcCC-CEEEEEECCcCcCCcccccccccccccccchhHHHHHHhc
Confidence 99998 678888999999999999999999999999987 9999999999999987542211111100000000112334
Q ss_pred HhccccccchhhhhhhhhcCC-hHHHHHHHHHHhccCcccc
Q 010380 409 TLVPRIRVVKGSGKAINYLTP-PRILLALVTAWLRRGRWFD 448 (512)
Q Consensus 409 ~~l~r~~~~~~va~~v~~L~s-~~~~~~~~~~~~~~g~~~~ 448 (512)
.+++|+..|+|++.++.||++ +...+.++..+..||++..
T Consensus 217 ~p~~r~~~pedvA~~v~fL~s~~~~~~itG~~i~vdGG~~~ 257 (281)
T 3zv4_A 217 LPIGRMPALEEYTGAYVFFATRGDSLPATGALLNYDGGMGV 257 (281)
T ss_dssp CTTSSCCCGGGGSHHHHHHHSTTTSTTCSSCEEEESSSGGG
T ss_pred CCCCCCCCHHHHHHHHHHhhcccccccccCcEEEECCCCcc
Confidence 578899999999999999999 7777888888888888743
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-39 Score=322.34 Aligned_cols=249 Identities=21% Similarity=0.290 Sum_probs=210.3
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
+++++|++|||||++|||+++|++|+++|++|++++|+.+++++..+++.+.. .+..+.++.+|+
T Consensus 6 ~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~---------------~~~~~~~~~~D~ 70 (267)
T 3t4x_A 6 MQLKGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQY---------------PDAILQPVVADL 70 (267)
T ss_dssp CCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHC---------------TTCEEEEEECCT
T ss_pred cccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhC---------------CCceEEEEecCC
Confidence 56889999999999999999999999999999999999999988888886632 235788899999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|++++++++ ++++++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|.|+++ +.|+||++||
T Consensus 71 ~~~~~~~~~~----~~~g~id~lv~nAg~~~-~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~-~~g~iv~isS 144 (267)
T 3t4x_A 71 GTEQGCQDVI----EKYPKVDILINNLGIFE-PVEYFDIPDEDWFKLFEVNIMSGVRLTRSYLKKMIER-KEGRVIFIAS 144 (267)
T ss_dssp TSHHHHHHHH----HHCCCCSEEEECCCCCC-CCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TEEEEEEECC
T ss_pred CCHHHHHHHH----HhcCCCCEEEECCCCCC-CCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCCEEEEEcc
Confidence 9999887765 45799999999999987 5788999999999999999999999999999999987 5789999999
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHH----
Q 010380 333 AGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVAR---- 408 (512)
Q Consensus 333 ~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~---- 408 (512)
. ++..+.++...|++||+|+++|+++|+.|++++||+||+|+||+|+|++....... ........+++..+
T Consensus 145 ~-~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 219 (267)
T 3t4x_A 145 E-AAIMPSQEMAHYSATKTMQLSLSRSLAELTTGTNVTVNTIMPGSTLTEGVETMLNS----LYPNEQLTIEEAEKRFMK 219 (267)
T ss_dssp G-GGTSCCTTCHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEECCBCCHHHHHHHHH----SSTTSCCCHHHHHHHHHH
T ss_pred h-hhccCCCcchHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCeecCccHHHHHhh----cCcccCCCHHHHHHHHhh
Confidence 8 67888899999999999999999999999999999999999999999975321100 00000011222111
Q ss_pred -----HhccccccchhhhhhhhhcCChHHHHHHHHHHhccCccc
Q 010380 409 -----TLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWF 447 (512)
Q Consensus 409 -----~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~ 447 (512)
.+++++..|+|+++++.||+++...+.++..+..||++.
T Consensus 220 ~~~~~~~~~r~~~pedvA~~v~fL~s~~~~~itG~~i~vdGG~~ 263 (267)
T 3t4x_A 220 ENRPTSIIQRLIRPEEIAHLVTFLSSPLSSAINGSALRIDGGLV 263 (267)
T ss_dssp HHCTTCSSCSCBCTHHHHHHHHHHHSGGGTTCCSCEEEESTTCS
T ss_pred ccCCcccccCccCHHHHHHHHHHHcCccccCccCCeEEECCCcc
Confidence 246889999999999999999988888888888888764
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-39 Score=328.56 Aligned_cols=261 Identities=16% Similarity=0.128 Sum_probs=214.3
Q ss_pred ccCCCCCCEEEEECCCC--hHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEE
Q 010380 171 EHCKAGPRNVVITGSTR--GLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGI 248 (512)
Q Consensus 171 ~~~~l~gk~vLVTGass--GIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v 248 (512)
..+++++|++|||||++ |||+++|++|+++|++|++++|+++..+.+.+...+ ...+.++
T Consensus 24 ~~~~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~------------------~~~~~~~ 85 (296)
T 3k31_A 24 TGMLMEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAES------------------LGVKLTV 85 (296)
T ss_dssp CCCTTTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHH------------------HTCCEEE
T ss_pred chhccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHh------------------cCCeEEE
Confidence 35678999999999997 999999999999999999999997655443333222 1246789
Q ss_pred EccCCChhhHHHHHHHHHHHcCCCcccccccccCCC---CCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCC
Q 010380 249 ACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKG---FKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGG 325 (512)
Q Consensus 249 ~~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~---~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g 325 (512)
.||++|+++++++++++.+++|+||+||||||+... ..++.+.+.++|++++++|+.++++++++++|.|++ +|
T Consensus 86 ~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~---~g 162 (296)
T 3k31_A 86 PCDVSDAESVDNMFKVLAEEWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTN---GG 162 (296)
T ss_dssp ECCTTCHHHHHHHHHHHHHHHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTT---CE
T ss_pred EcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc---CC
Confidence 999999999999999999999999999999998752 167889999999999999999999999999999975 58
Q ss_pred eEEeecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHH
Q 010380 326 HIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPET 405 (512)
Q Consensus 326 ~IV~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~ 405 (512)
+||++||. ++..+.++...|++||+|+++|+++|+.|++++||+||+|+||+|+|++........ .. ....
T Consensus 163 ~IV~isS~-~~~~~~~~~~~Y~asKaal~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~~~--~~------~~~~ 233 (296)
T 3k31_A 163 SILTLSYY-GAEKVVPHYNVMGVCKAALEASVKYLAVDLGKQQIRVNAISAGPVRTLASSGISDFH--YI------LTWN 233 (296)
T ss_dssp EEEEEECG-GGTSCCTTTTHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCCCCSSCCSCHHHH--HH------HHHH
T ss_pred EEEEEEeh-hhccCCCCchhhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEECCCcCchhhcccchH--HH------HHHH
Confidence 99999998 677888999999999999999999999999999999999999999999875432111 11 1223
Q ss_pred HHHHhccccccchhhhhhhhhcCChHHHHHHHHHHhccCcccccchhhhhHHHHHH
Q 010380 406 VARTLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWFDDQGRALYAAEADR 461 (512)
Q Consensus 406 vA~~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~r 461 (512)
....+++++..|+|+++++.||+++...+.++..+..||++........+.+...|
T Consensus 234 ~~~~p~~r~~~pedvA~~v~fL~s~~a~~itG~~i~vdGG~~~~~~~~~~~~~~~~ 289 (296)
T 3k31_A 234 KYNSPLRRNTTLDDVGGAALYLLSDLGRGTTGETVHVDCGYHVVGMKSVDAPDISR 289 (296)
T ss_dssp HHHSTTSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGGCSSCCC-------
T ss_pred HhcCCCCCCCCHHHHHHHHHHHcCCccCCccCCEEEECCCccccCCccCCchhHhh
Confidence 34567889999999999999999998888889999999988655444443333333
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-39 Score=319.93 Aligned_cols=249 Identities=22% Similarity=0.290 Sum_probs=201.7
Q ss_pred cCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEcc
Q 010380 172 HCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACD 251 (512)
Q Consensus 172 ~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~D 251 (512)
.+++++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++ +.++.++.+|
T Consensus 4 ~m~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~--------------------~~~~~~~~~D 63 (261)
T 3n74_A 4 SMSLEGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEI--------------------GDAALAVAAD 63 (261)
T ss_dssp -CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH--------------------CTTEEEEECC
T ss_pred cccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh--------------------CCceEEEEec
Confidence 36789999999999999999999999999999999999998887766543 3468899999
Q ss_pred CCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCC---CCCeEE
Q 010380 252 VCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQP---KGGHIF 328 (512)
Q Consensus 252 ltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~---~~g~IV 328 (512)
++|+++++++++++.++++++|+||||||+.....++.+.+.++|++++++|+.++++++++++|.|++++ ..++||
T Consensus 64 ~~~~~~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~iv 143 (261)
T 3n74_A 64 ISKEADVDAAVEAALSKFGKVDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYLMTSKLIPHFKENGAKGQECVIL 143 (261)
T ss_dssp TTSHHHHHHHHHHHHHHHSCCCEEEECCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCHHHHHHHHHHHHHhcCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCCeEEE
Confidence 99999999999999999999999999999876456788899999999999999999999999999998752 257899
Q ss_pred eecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHH
Q 010380 329 NMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVAR 408 (512)
Q Consensus 329 ~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~ 408 (512)
++||. ++..+.++...|++||+|+++|+++|+.|++++||+||+|+||+|+|++............ .......
T Consensus 144 ~isS~-~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~------~~~~~~~ 216 (261)
T 3n74_A 144 NVAST-GAGRPRPNLAWYNATKGWVVSVTKALAIELAPAKIRVVALNPVAGETPLLTTFMGEDSEEI------RKKFRDS 216 (261)
T ss_dssp EECCT-TTTSCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-------------------------------
T ss_pred EeCch-hhcCCCCCccHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccChhhhhhcccCcHHH------HHHHhhc
Confidence 99998 6778889999999999999999999999999999999999999999998754321111111 1122334
Q ss_pred HhccccccchhhhhhhhhcCChHHHHHHHHHHhccCccc
Q 010380 409 TLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWF 447 (512)
Q Consensus 409 ~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~ 447 (512)
.+++++..|+|+++++.||+++...+.++..+..||++.
T Consensus 217 ~~~~~~~~~~dva~~~~~l~s~~~~~itG~~i~vdgG~~ 255 (261)
T 3n74_A 217 IPMGRLLKPDDLAEAAAFLCSPQASMITGVALDVDGGRS 255 (261)
T ss_dssp CTTSSCCCHHHHHHHHHHHTSGGGTTCCSCEEEESTTTT
T ss_pred CCcCCCcCHHHHHHHHHHHcCCcccCcCCcEEEecCCcc
Confidence 567889999999999999999988777777777777763
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-39 Score=318.92 Aligned_cols=227 Identities=19% Similarity=0.204 Sum_probs=185.5
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
+++++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+ .+.++.++.||+
T Consensus 3 ~~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-----------------~~~~~~~~~~Dv 65 (252)
T 3h7a_A 3 LTPRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEA-----------------AGGRIVARSLDA 65 (252)
T ss_dssp --CCSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHH-----------------TTCEEEEEECCT
T ss_pred cCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-----------------cCCeEEEEECcC
Confidence 467899999999999999999999999999999999999999988888866 356899999999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|+++++++++++.+. |++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|.|+++ +.|+||++||
T Consensus 66 ~~~~~v~~~~~~~~~~-g~id~lv~nAg~~~-~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv~isS 142 (252)
T 3h7a_A 66 RNEDEVTAFLNAADAH-APLEVTIFNVGANV-NFPILETTDRVFRKVWEMACWAGFVSGRESARLMLAH-GQGKIFFTGA 142 (252)
T ss_dssp TCHHHHHHHHHHHHHH-SCEEEEEECCCCCC-CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEEEE
T ss_pred CCHHHHHHHHHHHHhh-CCceEEEECCCcCC-CCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEECC
Confidence 9999999999999999 99999999999987 6889999999999999999999999999999999987 5789999999
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEE-EEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhc
Q 010380 333 AGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGV-HTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLV 411 (512)
Q Consensus 333 ~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrV-n~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l 411 (512)
. ++..+.++...|++||+|+++|+++|+.|++++||+| |+|+||+|+|+|......... .......+.
T Consensus 143 ~-~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~v~n~v~PG~v~T~~~~~~~~~~~----------~~~~~~~~~ 211 (252)
T 3h7a_A 143 T-ASLRGGSGFAAFASAKFGLRAVAQSMARELMPKNIHVAHLIIDSGVDTAWVRERREQMF----------GKDALANPD 211 (252)
T ss_dssp G-GGTCCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-----------------------------------
T ss_pred H-HHcCCCCCCccHHHHHHHHHHHHHHHHHHhhhcCCEEEEEecCCccCChhhhccchhhh----------hhhhhcCCc
Confidence 8 6788889999999999999999999999999999999 999999999999754321110 111122334
Q ss_pred cccccchhhhhhhhhcCChH
Q 010380 412 PRIRVVKGSGKAINYLTPPR 431 (512)
Q Consensus 412 ~r~~~~~~va~~v~~L~s~~ 431 (512)
+ +..|+|+++++.||+++.
T Consensus 212 ~-~~~pedvA~~~~~l~s~~ 230 (252)
T 3h7a_A 212 L-LMPPAAVAGAYWQLYQQP 230 (252)
T ss_dssp ---CCHHHHHHHHHHHHHCC
T ss_pred c-CCCHHHHHHHHHHHHhCc
Confidence 4 788999999999998743
|
| >2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-39 Score=318.71 Aligned_cols=243 Identities=25% Similarity=0.391 Sum_probs=206.6
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEc-ChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASR-SSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R-~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
++++|+++||||++|||+++|++|+++|++|++++| ++++++++.+++.+ .+.++.++.+|+
T Consensus 1 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-----------------~~~~~~~~~~D~ 63 (246)
T 2uvd_A 1 MLKGKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKK-----------------LGSDAIAVRADV 63 (246)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH-----------------TTCCEEEEECCT
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHh-----------------cCCcEEEEEcCC
Confidence 367899999999999999999999999999999999 88888777777654 345788999999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|+++++++++++.+++|++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|.|+++ +.|+||++||
T Consensus 64 ~~~~~~~~~~~~~~~~~g~id~lv~nAg~~~-~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv~isS 141 (246)
T 2uvd_A 64 ANAEDVTNMVKQTVDVFGQVDILVNNAGVTK-DNLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQ-RHGRIVNIAS 141 (246)
T ss_dssp TCHHHHHHHHHHHHHHHSCCCEEEECCCCCC-CBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECC
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCCCC-CCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCcEEEEECC
Confidence 9999999999999999999999999999876 5778899999999999999999999999999999876 4689999999
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhcc
Q 010380 333 AGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVP 412 (512)
Q Consensus 333 ~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~ 412 (512)
. ++..+.++...|++||+|+++|+++++.|++++||+||+|+||+|+|++......... .......+++
T Consensus 142 ~-~~~~~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~----------~~~~~~~p~~ 210 (246)
T 2uvd_A 142 V-VGVTGNPGQANYVAAKAGVIGLTKTSAKELASRNITVNAIAPGFIATDMTDVLDENIK----------AEMLKLIPAA 210 (246)
T ss_dssp T-HHHHCCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBGGGCSSCCCTTHH----------HHHHHTCTTC
T ss_pred H-HhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeccccCcchhhcCHHHH----------HHHHhcCCCC
Confidence 7 5666778899999999999999999999999999999999999999998643211100 1111224567
Q ss_pred ccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 413 RIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 413 r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
++..|+|+++.+.||+++...+.++..+..+|++
T Consensus 211 ~~~~~~dvA~~~~~l~s~~~~~~tG~~~~vdgG~ 244 (246)
T 2uvd_A 211 QFGEAQDIANAVTFFASDQSKYITGQTLNVDGGM 244 (246)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTS
T ss_pred CCcCHHHHHHHHHHHcCchhcCCCCCEEEECcCc
Confidence 8889999999999999987655556555555554
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-39 Score=321.16 Aligned_cols=252 Identities=25% Similarity=0.380 Sum_probs=209.7
Q ss_pred ccccCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEE
Q 010380 169 LEEHCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGI 248 (512)
Q Consensus 169 ~~~~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v 248 (512)
..+..++++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+. .+.++.++
T Consensus 13 ~~~~~~l~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~----------------~~~~~~~~ 76 (267)
T 1vl8_A 13 MKEVFDLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEK----------------YGVETMAF 76 (267)
T ss_dssp ----CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH----------------HCCCEEEE
T ss_pred CCCCcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh----------------cCCeEEEE
Confidence 34466789999999999999999999999999999999999998888777776332 24578889
Q ss_pred EccCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEE
Q 010380 249 ACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIF 328 (512)
Q Consensus 249 ~~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV 328 (512)
.||++|+++++++++++.+++|++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|.|+++ +.|+||
T Consensus 77 ~~Dl~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~-~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~-~~g~iv 154 (267)
T 1vl8_A 77 RCDVSNYEEVKKLLEAVKEKFGKLDTVVNAAGINR-RHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRES-DNPSII 154 (267)
T ss_dssp ECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCC-CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTC-SSCEEE
T ss_pred EcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCcCC-CCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCcEEE
Confidence 99999999999999999999999999999999876 5788899999999999999999999999999999876 578999
Q ss_pred eecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHH
Q 010380 329 NMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVAR 408 (512)
Q Consensus 329 ~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~ 408 (512)
++||...+..+.++...|++||+++++|+++++.|++++||+||+|+||+|+|+|...... ..... ......
T Consensus 155 ~isS~~~~~~~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~--~~~~~------~~~~~~ 226 (267)
T 1vl8_A 155 NIGSLTVEEVTMPNISAYAASKGGVASLTKALAKEWGRYGIRVNVIAPGWYRTKMTEAVFS--DPEKL------DYMLKR 226 (267)
T ss_dssp EECCGGGTCCCSSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSTTTHHHHT--CHHHH------HHHHHT
T ss_pred EECCcchhccCCCCChhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccCcccccccccc--ChHHH------HHHHhh
Confidence 9999832667778899999999999999999999999999999999999999998532100 00000 111223
Q ss_pred HhccccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 409 TLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 409 ~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
.+++++..|++++..+.||+++...+.++..+..+|++
T Consensus 227 ~p~~~~~~p~dvA~~v~~l~s~~~~~itG~~i~vdGG~ 264 (267)
T 1vl8_A 227 IPLGRTGVPEDLKGVAVFLASEEAKYVTGQIIFVDGGW 264 (267)
T ss_dssp CTTSSCBCGGGGHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred CCCCCCcCHHHHHHHHHHHcCccccCCcCCeEEECCCC
Confidence 45678899999999999999987666666666666665
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-39 Score=319.50 Aligned_cols=250 Identities=24% Similarity=0.336 Sum_probs=210.7
Q ss_pred cCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEcc
Q 010380 172 HCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACD 251 (512)
Q Consensus 172 ~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~D 251 (512)
.+++++|++|||||++|||+++|++|+++|++|++++|++++++++.+++.+ .+.++.++.+|
T Consensus 4 ~~~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-----------------~~~~~~~~~~D 66 (260)
T 2ae2_A 4 RWNLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRS-----------------KGFKVEASVCD 66 (260)
T ss_dssp TTCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-----------------TTCEEEEEECC
T ss_pred ccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-----------------cCCcEEEEEcC
Confidence 4568899999999999999999999999999999999999888877777754 34678899999
Q ss_pred CCChhhHHHHHHHHHHHc-CCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEee
Q 010380 252 VCEPADVQKLSNFAVNEF-GSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNM 330 (512)
Q Consensus 252 ltd~~sv~~~~~~i~~~~-g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~v 330 (512)
++|+++++++++++.+++ +++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|.|+++ +.|+||++
T Consensus 67 ~~~~~~~~~~~~~~~~~~~g~id~lv~~Ag~~~-~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv~i 144 (260)
T 2ae2_A 67 LSSRSERQELMNTVANHFHGKLNILVNNAGIVI-YKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKAS-ERGNVVFI 144 (260)
T ss_dssp TTCHHHHHHHHHHHHHHTTTCCCEEEECCCCCC-CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-SSEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCEEEECCCCCC-CCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCcEEEEE
Confidence 999999999999999999 89999999999876 5778899999999999999999999999999999886 56899999
Q ss_pred cCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHh
Q 010380 331 DGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTL 410 (512)
Q Consensus 331 SS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~ 410 (512)
||. ++..+.++...|++||++++.|+++++.|++++||+||+|+||+++|++....... ...... ........+
T Consensus 145 sS~-~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~--~~~~~~---~~~~~~~~~ 218 (260)
T 2ae2_A 145 SSV-SGALAVPYEAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATSLVEMTIQD--PEQKEN---LNKLIDRCA 218 (260)
T ss_dssp CCG-GGTSCCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSHHHHHHTTS--HHHHHH---HHHHHHTST
T ss_pred cch-hhccCCCCcchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCCCCCcchhhhccC--hhhHHH---HHHHHhcCC
Confidence 997 56778888999999999999999999999999999999999999999985321100 000000 001222345
Q ss_pred ccccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 411 VPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 411 l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
++++..|+|+++++.||+++...+.++..+..+|++
T Consensus 219 ~~~~~~~~dvA~~v~~l~s~~~~~~tG~~~~vdgG~ 254 (260)
T 2ae2_A 219 LRRMGEPKELAAMVAFLCFPAASYVTGQIIYVDGGL 254 (260)
T ss_dssp TCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred CCCCCCHHHHHHHHHHHcCccccCCCCCEEEECCCc
Confidence 678899999999999999987666566666666654
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-39 Score=326.26 Aligned_cols=233 Identities=26% Similarity=0.390 Sum_probs=191.4
Q ss_pred cccCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEE
Q 010380 170 EEHCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIA 249 (512)
Q Consensus 170 ~~~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~ 249 (512)
....+++||++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+. .+..+.++.
T Consensus 26 ~~~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~----------------~~~~~~~~~ 89 (281)
T 4dry_A 26 QGKGSGEGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGGR----------------TGNIVRAVV 89 (281)
T ss_dssp --------CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH----------------HSSCEEEEE
T ss_pred ccCCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc----------------CCCeEEEEE
Confidence 3446789999999999999999999999999999999999999998888887653 123468899
Q ss_pred ccCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCC-CCCeEE
Q 010380 250 CDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQP-KGGHIF 328 (512)
Q Consensus 250 ~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~-~~g~IV 328 (512)
||++|+++++++++++.+++|++|+||||||+.....++.+.+.++|++++++|+.|+++++++++|.|++++ ++|+||
T Consensus 90 ~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV 169 (281)
T 4dry_A 90 CDVGDPDQVAALFAAVRAEFARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAFLCTQHAFRMMKAQTPRGGRII 169 (281)
T ss_dssp CCTTCHHHHHHHHHHHHHHHSCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEE
T ss_pred cCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCcEEE
Confidence 9999999999999999999999999999999876457889999999999999999999999999999999874 368999
Q ss_pred eecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHH
Q 010380 329 NMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVAR 408 (512)
Q Consensus 329 ~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~ 408 (512)
++||. ++..+.++...|++||+|+++|+++++.|++++||+||+|+||+|+|+|.......... ....
T Consensus 170 ~isS~-~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~-----------~~~~ 237 (281)
T 4dry_A 170 NNGSI-SAQTPRPNSAPYTATKHAITGLTKSTALDGRMHDIACGQIDIGNAATDMTARMSTGVLQ-----------ANGE 237 (281)
T ss_dssp EECCG-GGTCCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEECBCC-------CEEEC-----------TTSC
T ss_pred EECCH-HhCCCCCCChhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECcCcChhhhhhcchhhh-----------hhhc
Confidence 99998 67788899999999999999999999999999999999999999999997543211100 0112
Q ss_pred HhccccccchhhhhhhhhcCCh
Q 010380 409 TLVPRIRVVKGSGKAINYLTPP 430 (512)
Q Consensus 409 ~~l~r~~~~~~va~~v~~L~s~ 430 (512)
.+..++..|+|+++++.||++.
T Consensus 238 ~~~~~~~~pedvA~~v~fL~s~ 259 (281)
T 4dry_A 238 VAAEPTIPIEHIAEAVVYMASL 259 (281)
T ss_dssp EEECCCBCHHHHHHHHHHHHHS
T ss_pred ccccCCCCHHHHHHHHHHHhCC
Confidence 3455677889999999999874
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-39 Score=320.11 Aligned_cols=249 Identities=22% Similarity=0.312 Sum_probs=208.6
Q ss_pred ccCCCCCCEEEEECCC-ChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEE
Q 010380 171 EHCKAGPRNVVITGST-RGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIA 249 (512)
Q Consensus 171 ~~~~l~gk~vLVTGas-sGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~ 249 (512)
...++++|++|||||+ +|||+++|++|+++|++|++++|+.+++++..+++.+. .+.++.++.
T Consensus 16 ~~~~l~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~----------------~~~~~~~~~ 79 (266)
T 3o38_A 16 GHGLLKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADL----------------GLGRVEAVV 79 (266)
T ss_dssp CCSTTTTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT----------------CSSCEEEEE
T ss_pred cccCCCCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhc----------------CCCceEEEE
Confidence 3456899999999998 59999999999999999999999999988888877542 246899999
Q ss_pred ccCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEe
Q 010380 250 CDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFN 329 (512)
Q Consensus 250 ~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~ 329 (512)
||++|+++++++++++.+++++||+||||||+.. ..++.+.+.++|++++++|+.++++++++++|+|++++++++||+
T Consensus 80 ~Dl~~~~~v~~~~~~~~~~~g~id~li~~Ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~ 158 (266)
T 3o38_A 80 CDVTSTEAVDALITQTVEKAGRLDVLVNNAGLGG-QTPVVDMTDEEWDRVLNVTLTSVMRATRAALRYFRGVDHGGVIVN 158 (266)
T ss_dssp CCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCC-CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSCCEEEEE
T ss_pred eCCCCHHHHHHHHHHHHHHhCCCcEEEECCCcCC-CCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 9999999999999999999999999999999877 678899999999999999999999999999999998766789999
Q ss_pred ecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHH
Q 010380 330 MDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVART 409 (512)
Q Consensus 330 vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~ 409 (512)
+||. .+..+.++...|++||+|+++|+++|+.|++++||+||+|+||+|+|++........ . ........
T Consensus 159 ~sS~-~~~~~~~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~---~------~~~~~~~~ 228 (266)
T 3o38_A 159 NASV-LGWRAQHSQSHYAAAKAGVMALTRCSAIEAVEFGVRINAVSPSIARHKFLEKTSSSE---L------LDRLASDE 228 (266)
T ss_dssp ECCG-GGTCCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCC--------------------------CC
T ss_pred eCCH-HHcCCCCCCchHHHHHHHHHHHHHHHHHHHHHcCcEEEEEeCCcccchhhhccCcHH---H------HHHHHhcC
Confidence 9998 677888999999999999999999999999999999999999999999875432111 0 11122334
Q ss_pred hccccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 410 LVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 410 ~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
+++++..|+|+++++.||+++...+.++..+..+|++
T Consensus 229 ~~~r~~~~~dva~~i~~l~s~~~~~~tG~~i~vdgG~ 265 (266)
T 3o38_A 229 AFGRAAEPWEVAATIAFLASDYSSYMTGEVVSVSSQR 265 (266)
T ss_dssp TTSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESSCC
T ss_pred CcCCCCCHHHHHHHHHHHcCccccCccCCEEEEcCCc
Confidence 5788899999999999999987766666666665554
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-40 Score=324.05 Aligned_cols=245 Identities=21% Similarity=0.303 Sum_probs=201.2
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEE-EcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEcc
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVA-SRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACD 251 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~-~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~D 251 (512)
+++++|++|||||++|||+++|++|+++|++|+++ .|+.+.+++..+++.+ .+.++.++.||
T Consensus 4 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~D 66 (259)
T 3edm_A 4 QRFTNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEK-----------------LGRSALAIKAD 66 (259)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHT-----------------TTSCCEEEECC
T ss_pred cCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHh-----------------cCCceEEEEcC
Confidence 46889999999999999999999999999999998 5667777776666654 35678899999
Q ss_pred CCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeec
Q 010380 252 VCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD 331 (512)
Q Consensus 252 ltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vS 331 (512)
++|+++++++++++.+++|++|+||||||+.....++.+.+.++|++++++|+.|+++++++++|.|++ +|+||++|
T Consensus 67 v~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~---~g~iv~is 143 (259)
T 3edm_A 67 LTNAAEVEAAISAAADKFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAK---GGAIVTFS 143 (259)
T ss_dssp TTCHHHHHHHHHHHHHHHCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEE---EEEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHhCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCEEEEEc
Confidence 999999999999999999999999999998744678999999999999999999999999999999975 58999999
Q ss_pred CCCCCC-CCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHh
Q 010380 332 GAGSGG-SSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTL 410 (512)
Q Consensus 332 S~~a~~-~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~ 410 (512)
|. ++. .+.++...|++||+|+++|+++++.|+++. |+||+|+||+|+|+|....... .. ........+
T Consensus 144 S~-~~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~~-I~vn~v~PG~v~T~~~~~~~~~---~~------~~~~~~~~p 212 (259)
T 3edm_A 144 SQ-AGRDGGGPGALAYATSKGAVMTFTRGLAKEVGPK-IRVNAVCPGMISTTFHDTFTKP---EV------RERVAGATS 212 (259)
T ss_dssp CH-HHHHCCSTTCHHHHHHHHHHHHHHHHHHHHHTTT-CEEEEEEECCBCC-----------------------------
T ss_pred CH-HhccCCCCCcHHHHHHHHHHHHHHHHHHHHHCCC-CEEEEEEECCCcCcccccccCh---HH------HHHHHhcCC
Confidence 97 444 677889999999999999999999999987 9999999999999987543211 00 112234467
Q ss_pred ccccccchhhhhhhhhcCChHHHHHHHHHHhccCcccc
Q 010380 411 VPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWFD 448 (512)
Q Consensus 411 l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~~ 448 (512)
++++..|+|+++++.||+++...+.++..+..||++..
T Consensus 213 ~~r~~~pedva~~v~~L~s~~~~~itG~~i~vdGg~~~ 250 (259)
T 3edm_A 213 LKREGSSEDVAGLVAFLASDDAAYVTGACYDINGGVLF 250 (259)
T ss_dssp --CCBCHHHHHHHHHHHHSGGGTTCCSCEEEESBCSSB
T ss_pred CCCCcCHHHHHHHHHHHcCccccCccCCEEEECCCcCC
Confidence 88999999999999999999988888888888887753
|
| >1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-39 Score=318.68 Aligned_cols=253 Identities=22% Similarity=0.245 Sum_probs=203.7
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhh-HHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 175 AGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSES-VRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 175 l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~-l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
+++|++|||||++|||+++|++|+++|++|++++|+.++ ++++.+++.+. .+.++.++.+|++
T Consensus 2 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~----------------~~~~~~~~~~D~~ 65 (260)
T 1x1t_A 2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQ----------------HGVKVLYDGADLS 65 (260)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHH----------------HTSCEEEECCCTT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHhc----------------cCCcEEEEECCCC
Confidence 678999999999999999999999999999999999887 77777766542 1357888999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
|+++++++++++.+++|++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|.|+++ +.|+||++||.
T Consensus 66 ~~~~v~~~~~~~~~~~g~iD~lv~~Ag~~~-~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv~isS~ 143 (260)
T 1x1t_A 66 KGEAVRGLVDNAVRQMGRIDILVNNAGIQH-TALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQ-GFGRIINIASA 143 (260)
T ss_dssp SHHHHHHHHHHHHHHHSCCSEEEECCCCCC-CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCG
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEECCCCCC-CCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCEEEEECcH
Confidence 999999999999999999999999999876 5778899999999999999999999999999999876 46899999998
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCC-HHH-HHHHhc
Q 010380 334 GSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICEL-PET-VARTLV 411 (512)
Q Consensus 334 ~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~-pe~-vA~~~l 411 (512)
++..+.++...|++||++++.|+++++.|++++||+||+|+||+|+|++................... ... ....++
T Consensus 144 -~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 222 (260)
T 1x1t_A 144 -HGLVASANKSAYVAAKHGVVGFTKVTALETAGQGITANAICPGWVRTPLVEKQISALAEKNGVDQETAARELLSEKQPS 222 (260)
T ss_dssp -GGTSCCTTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC------------------------CHHHHCTT
T ss_pred -HhCcCCCCCchHHHHHHHHHHHHHHHHHHhccCCEEEEEEeecCccCchHHHhhhhhccccCCchHHHHHHHhhccCCC
Confidence 66777888999999999999999999999999999999999999999986432110000000000000 001 233467
Q ss_pred cccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 412 PRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 412 ~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
+++..|+|+++++.||+++...+.++..+..+|++
T Consensus 223 ~~~~~p~dva~~~~~l~s~~~~~~tG~~~~vdgG~ 257 (260)
T 1x1t_A 223 LQFVTPEQLGGTAVFLASDAAAQITGTTVSVDGGW 257 (260)
T ss_dssp CCCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred CCCcCHHHHHHHHHHHhChhhcCCCCCEEEECCCc
Confidence 78899999999999999987666666666666665
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-39 Score=321.31 Aligned_cols=252 Identities=19% Similarity=0.291 Sum_probs=205.8
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
++++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+ .+.++.++.||++
T Consensus 4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-----------------~~~~~~~~~~D~~ 66 (262)
T 1zem_A 4 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVRE-----------------KGVEARSYVCDVT 66 (262)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHT-----------------TTSCEEEEECCTT
T ss_pred ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-----------------cCCcEEEEEecCC
Confidence 57899999999999999999999999999999999999888777776643 3457889999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
|+++++++++++.+++|++|+||||||+.....++.+.+.++|++++++|+.++++++++++|.|+++ +.|+||++||.
T Consensus 67 ~~~~~~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv~isS~ 145 (262)
T 1zem_A 67 SEEAVIGTVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQ-NYGRIVNTASM 145 (262)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCH
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCcEEEEEcch
Confidence 99999999999999999999999999987225788899999999999999999999999999999876 46899999997
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhh-hhhcCCHH-----HHH
Q 010380 334 GSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMF-NIICELPE-----TVA 407 (512)
Q Consensus 334 ~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~-~~~~~~pe-----~vA 407 (512)
++..+.++...|++||+|+++|+++++.|++++||+||+|+||+|+|+|............. ......++ ...
T Consensus 146 -~~~~~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (262)
T 1zem_A 146 -AGVKGPPNMAAYGTSKGAIIALTETAALDLAPYNIRVNAISPGYMGPGFMWERQVELQAKVGSQYFSTDPKVVAQQMIG 224 (262)
T ss_dssp -HHHSCCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSHHHHHHHHHHHHHTCTTSCSSHHHHHHHHHH
T ss_pred -hhccCCCCCchHHHHHHHHHHHHHHHHHHHHhhCeEEEEEecCCcCcchhhhhccchhhhccccccccCHHHHHHHHHh
Confidence 56677788999999999999999999999999999999999999999985321000000000 00000122 122
Q ss_pred HHhccccccchhhhhhhhhcCChHHHHHHHHHHhccC
Q 010380 408 RTLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRG 444 (512)
Q Consensus 408 ~~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g 444 (512)
..+++++..|+|+++++.||+++...+.++..+..||
T Consensus 225 ~~p~~r~~~p~dvA~~v~~l~s~~~~~itG~~i~vdG 261 (262)
T 1zem_A 225 SVPMRRYGDINEIPGVVAFLLGDDSSFMTGVNLPIAG 261 (262)
T ss_dssp TSTTSSCBCGGGSHHHHHHHHSGGGTTCCSCEEEESC
T ss_pred cCCCCCCcCHHHHHHHHHHHcCchhcCcCCcEEecCC
Confidence 3567889999999999999999876554444444433
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-39 Score=320.68 Aligned_cols=251 Identities=24% Similarity=0.315 Sum_probs=209.3
Q ss_pred cCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEcc
Q 010380 172 HCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACD 251 (512)
Q Consensus 172 ~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~D 251 (512)
..++++|++|||||++|||+++|++|+++|++|++++|++++++++.+++.+.. .+.++.++.||
T Consensus 8 ~~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~---------------~~~~~~~~~~D 72 (267)
T 1iy8_A 8 TTRFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETA---------------PDAEVLTTVAD 72 (267)
T ss_dssp --CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHC---------------TTCCEEEEECC
T ss_pred CccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc---------------CCceEEEEEcc
Confidence 346889999999999999999999999999999999999988887777775421 14578899999
Q ss_pred CCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeec
Q 010380 252 VCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD 331 (512)
Q Consensus 252 ltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vS 331 (512)
++|+++++++++++.+++|++|+||||||+.....++.+.+.++|++++++|+.|+++++++++|.|+++ +.|+||++|
T Consensus 73 ~~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv~is 151 (267)
T 1iy8_A 73 VSDEAQVEAYVTATTERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQ-GSGMVVNTA 151 (267)
T ss_dssp TTSHHHHHHHHHHHHHHHSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCCEEEEEc
Confidence 9999999999999999999999999999987622678899999999999999999999999999999876 468999999
Q ss_pred CCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHH-----HH
Q 010380 332 GAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPE-----TV 406 (512)
Q Consensus 332 S~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe-----~v 406 (512)
|. ++..+.++...|++||+|+++|+++++.|++++||+||+|+||+|+|++......... ....+ ..
T Consensus 152 S~-~~~~~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~-------~~~~~~~~~~~~ 223 (267)
T 1iy8_A 152 SV-GGIRGIGNQSGYAAAKHGVVGLTRNSAVEYGRYGIRINAIAPGAIWTPMVENSMKQLD-------PENPRKAAEEFI 223 (267)
T ss_dssp CG-GGTSBCSSBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHHHHHHHC-------TTCHHHHHHHHH
T ss_pred ch-hhccCCCCCccHHHHHHHHHHHHHHHHHHHHhcCeEEEEEEeCCCcCcchhccccccC-------hhhhhhHHHHHh
Confidence 98 6777888999999999999999999999999999999999999999998532100000 00111 11
Q ss_pred HHHhccccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 407 ARTLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 407 A~~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
...+++++..|+|+++++.||+++...+.++..+..||++
T Consensus 224 ~~~p~~r~~~~~dvA~~v~~l~s~~~~~~tG~~i~vdGG~ 263 (267)
T 1iy8_A 224 QVNPSKRYGEAPEIAAVVAFLLSDDASYVNATVVPIDGGQ 263 (267)
T ss_dssp TTCTTCSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTT
T ss_pred ccCCCCCCcCHHHHHHHHHHHcCccccCCCCCEEEECCCc
Confidence 2245678899999999999999988766666666666654
|
| >3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-40 Score=328.54 Aligned_cols=238 Identities=18% Similarity=0.234 Sum_probs=204.3
Q ss_pred cCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChh-------hHHHHHHHHHHHHhhhhhhcCCCCcccccCce
Q 010380 172 HCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSE-------SVRMTVTELEENLKEGMMAAGGSSKKNLVHAK 244 (512)
Q Consensus 172 ~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~-------~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~ 244 (512)
.+++++|++|||||++|||+++|++|+++|++|++++|+.+ .+++..+++.+ .+.+
T Consensus 4 ~m~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-----------------~~~~ 66 (285)
T 3sc4_A 4 SMSLRGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEE-----------------AGGQ 66 (285)
T ss_dssp --CCTTCEEEEESCSSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHH-----------------HTSE
T ss_pred CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECChhhhhhhhHHHHHHHHHHHh-----------------cCCc
Confidence 36789999999999999999999999999999999999977 45666666654 3568
Q ss_pred EEEEEccCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCC
Q 010380 245 VAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKG 324 (512)
Q Consensus 245 v~~v~~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~ 324 (512)
+.++.||++|+++++++++++.+++|++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|.|+++ +.
T Consensus 67 ~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lvnnAg~~~-~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~ 144 (285)
T 3sc4_A 67 ALPIVGDIRDGDAVAAAVAKTVEQFGGIDICVNNASAIN-LGSIEEVPLKRFDLMNGIQVRGTYAVSQSCIPHMKGR-DN 144 (285)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHHHHSCCSEEEECCCCCC-CCCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGTTTS-SS
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCC-CCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CC
Confidence 999999999999999999999999999999999999987 6889999999999999999999999999999999876 57
Q ss_pred CeEEeecCCCCCCCCC-CCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCC-cccCCcccCCcchhhhhhhhhhcCC
Q 010380 325 GHIFNMDGAGSGGSST-PLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPG-MVLTDLLLSGSTIQNKQMFNIICEL 402 (512)
Q Consensus 325 g~IV~vSS~~a~~~~~-p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG-~V~T~~~~~~~~~~~~~~~~~~~~~ 402 (512)
|+||++||. ++..+. ++...|++||+|+++|+++|+.|++++||+||+|+|| +++|++..... .
T Consensus 145 g~iv~isS~-~~~~~~~~~~~~Y~asKaal~~~~~~la~e~~~~gI~vn~v~PG~~v~t~~~~~~~--------~----- 210 (285)
T 3sc4_A 145 PHILTLSPP-IRLEPKWLRPTPYMMAKYGMTLCALGIAEELRDAGIASNTLWPRTTVATAAVQNLL--------G----- 210 (285)
T ss_dssp CEEEECCCC-CCCSGGGSCSHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECSSCBCCHHHHHHH--------T-----
T ss_pred cEEEEECCh-hhccCCCCCCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeCCCccccHHHHhhc--------c-----
Confidence 899999998 455554 7789999999999999999999999999999999999 79998853210 0
Q ss_pred HHHHHHHhccccccchhhhhhhhhcCChHHHHHHHHHHhccCccc
Q 010380 403 PETVARTLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWF 447 (512)
Q Consensus 403 pe~vA~~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~ 447 (512)
...+++++..|+|+++++.||+++.. +.++..+..+|++.
T Consensus 211 ----~~~~~~r~~~pedvA~~~~~l~s~~~-~~tG~~i~~dgg~~ 250 (285)
T 3sc4_A 211 ----GDEAMARSRKPEVYADAAYVVLNKPS-SYTGNTLLCEDVLL 250 (285)
T ss_dssp ----SCCCCTTCBCTHHHHHHHHHHHTSCT-TCCSCEEEHHHHHH
T ss_pred ----ccccccCCCCHHHHHHHHHHHhCCcc-cccceEEEEcCchh
Confidence 01246788899999999999999876 66666666666553
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-39 Score=321.97 Aligned_cols=235 Identities=23% Similarity=0.377 Sum_probs=190.9
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCC
Q 010380 175 AGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCE 254 (512)
Q Consensus 175 l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd 254 (512)
+.+|++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+ .+.++.++.||++|
T Consensus 2 l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~-----------------~~~~~~~~~~Dv~d 64 (264)
T 3tfo_A 2 VMDKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRD-----------------AGGTALAQVLDVTD 64 (264)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHH-----------------TTCEEEEEECCTTC
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh-----------------cCCcEEEEEcCCCC
Confidence 5789999999999999999999999999999999999999888888866 45688999999999
Q ss_pred hhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCC
Q 010380 255 PADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAG 334 (512)
Q Consensus 255 ~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~ 334 (512)
+++++++++++.+++|++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|.|+++ +.|+||++||.
T Consensus 65 ~~~v~~~~~~~~~~~g~iD~lVnnAG~~~-~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~IV~isS~- 141 (264)
T 3tfo_A 65 RHSVAAFAQAAVDTWGRIDVLVNNAGVMP-LSPLAAVKVDEWERMIDVNIKGVLWGIGAVLPIMEAQ-RSGQIINIGSI- 141 (264)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCCC-CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCG-
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCC-CCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCeEEEEEcCH-
Confidence 99999999999999999999999999986 6889999999999999999999999999999999876 57899999998
Q ss_pred CCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhcccc
Q 010380 335 SGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPRI 414 (512)
Q Consensus 335 a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~r~ 414 (512)
++..+.++...|++||+|+++|+++|+.|+ + ||+||+|+||+|+|+|........... .........
T Consensus 142 ~~~~~~~~~~~Y~asKaal~~l~~~la~e~-~-gIrvn~v~PG~v~T~~~~~~~~~~~~~-----------~~~~~~~~~ 208 (264)
T 3tfo_A 142 GALSVVPTAAVYCATKFAVRAISDGLRQES-T-NIRVTCVNPGVVESELAGTITHEETMA-----------AMDTYRAIA 208 (264)
T ss_dssp GGTCCCTTCHHHHHHHHHHHHHHHHHHHHC-S-SEEEEEEEECCC----------------------------------C
T ss_pred HHcccCCCChhHHHHHHHHHHHHHHHHHhC-C-CCEEEEEecCCCcCcccccccchhHHH-----------HHHhhhccC
Confidence 678888999999999999999999999998 5 999999999999999975422111000 000011123
Q ss_pred ccchhhhhhhhhcCChHHHHHHHHHHhc
Q 010380 415 RVVKGSGKAINYLTPPRILLALVTAWLR 442 (512)
Q Consensus 415 ~~~~~va~~v~~L~s~~~~~~~~~~~~~ 442 (512)
..|+|+++++.||+++.....+....+.
T Consensus 209 ~~pedvA~~v~~l~s~~~~~~~~~i~i~ 236 (264)
T 3tfo_A 209 LQPADIARAVRQVIEAPQSVDTTEITIR 236 (264)
T ss_dssp CCHHHHHHHHHHHHHSCTTEEEEEEEEE
T ss_pred CCHHHHHHHHHHHhcCCccCccceEEEe
Confidence 5788899999998877654333333333
|
| >2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-39 Score=315.48 Aligned_cols=248 Identities=24% Similarity=0.318 Sum_probs=209.0
Q ss_pred cCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEcc
Q 010380 172 HCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACD 251 (512)
Q Consensus 172 ~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~D 251 (512)
..++++|++|||||++|||+++|++|+++|++|++++|+.+++++..+++.+ .+.++.++.+|
T Consensus 9 ~~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~-----------------~~~~~~~~~~D 71 (260)
T 2zat_A 9 RKPLENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQG-----------------EGLSVTGTVCH 71 (260)
T ss_dssp -CTTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-----------------TTCCEEEEECC
T ss_pred ccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-----------------cCCceEEEEcc
Confidence 3467899999999999999999999999999999999999888877777654 34578889999
Q ss_pred CCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeec
Q 010380 252 VCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD 331 (512)
Q Consensus 252 ltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vS 331 (512)
++|+++++++++++.+.+|++|+||||||+.....++.+.+.++|++++++|+.++++++++++|.|+++ +.++||++|
T Consensus 72 ~~~~~~~~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~-~~g~iv~is 150 (260)
T 2zat_A 72 VGKAEDRERLVAMAVNLHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKR-GGGSVLIVS 150 (260)
T ss_dssp TTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCCEEEEEe
Confidence 9999999999999999999999999999986434678899999999999999999999999999999876 578999999
Q ss_pred CCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhc
Q 010380 332 GAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLV 411 (512)
Q Consensus 332 S~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l 411 (512)
|. ++..+.++...|++||++++.|+++++.|++++||+||+|+||+|+|++...... .... ........++
T Consensus 151 S~-~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~--~~~~------~~~~~~~~~~ 221 (260)
T 2zat_A 151 SV-GAYHPFPNLGPYNVSKTALLGLTKNLAVELAPRNIRVNCLAPGLIKTNFSQVLWM--DKAR------KEYMKESLRI 221 (260)
T ss_dssp CG-GGTSCCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSTTHHHHS--SHHH------HHHHHHHHTC
T ss_pred ch-hhcCCCCCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECcccCccchhccc--ChHH------HHHHHhcCCC
Confidence 98 6777888999999999999999999999999999999999999999998532100 0000 0111233567
Q ss_pred cccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 412 PRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 412 ~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
+++..|+|+++++.||+++...+.++..+..+|++
T Consensus 222 ~~~~~~~dva~~v~~l~s~~~~~~tG~~~~vdgG~ 256 (260)
T 2zat_A 222 RRLGNPEDCAGIVSFLCSEDASYITGETVVVGGGT 256 (260)
T ss_dssp SSCBCGGGGHHHHHHHTSGGGTTCCSCEEEESTTC
T ss_pred CCCCCHHHHHHHHHHHcCcccCCccCCEEEECCCc
Confidence 88999999999999999987655555555555554
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-39 Score=328.45 Aligned_cols=246 Identities=20% Similarity=0.278 Sum_probs=208.5
Q ss_pred cCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcCh--hhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEE
Q 010380 172 HCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSS--ESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIA 249 (512)
Q Consensus 172 ~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~--~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~ 249 (512)
..++++|++|||||++|||+++|++|+++|++|++++|+. +.++++.+++.+ .+.++.++.
T Consensus 44 ~~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~ 106 (294)
T 3r3s_A 44 SGRLKDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEE-----------------CGRKAVLLP 106 (294)
T ss_dssp CSTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHH-----------------TTCCEEECC
T ss_pred ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHH-----------------cCCcEEEEE
Confidence 3568999999999999999999999999999999999873 344444444433 356789999
Q ss_pred ccCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEe
Q 010380 250 CDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFN 329 (512)
Q Consensus 250 ~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~ 329 (512)
||++|+++++++++++.+++|++|+||||||+.....++.+.+.++|++++++|+.|+++++++++|.|++ +|+||+
T Consensus 107 ~Dv~d~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~---~g~Iv~ 183 (294)
T 3r3s_A 107 GDLSDESFARSLVHKAREALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPK---GASIIT 183 (294)
T ss_dssp CCTTSHHHHHHHHHHHHHHHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCT---TCEEEE
T ss_pred ecCCCHHHHHHHHHHHHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhc---CCEEEE
Confidence 99999999999999999999999999999998654567899999999999999999999999999999964 489999
Q ss_pred ecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHH
Q 010380 330 MDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVART 409 (512)
Q Consensus 330 vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~ 409 (512)
+||. ++..+.++...|++||+|+++|+++|+.|++++||+||+|+||+|+|++........ .. ........
T Consensus 184 isS~-~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~--~~------~~~~~~~~ 254 (294)
T 3r3s_A 184 TSSI-QAYQPSPHLLDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTALQISGGQTQ--DK------IPQFGQQT 254 (294)
T ss_dssp ECCG-GGTSCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHTTTSCG--GG------STTTTTTS
T ss_pred ECCh-hhccCCCCchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcCccccccccCCCH--HH------HHHHHhcC
Confidence 9998 678888999999999999999999999999999999999999999999843221110 00 11122345
Q ss_pred hccccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 410 LVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 410 ~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
+++++..|+|+++++.||+++...+.++..+..||++
T Consensus 255 p~~r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG~ 291 (294)
T 3r3s_A 255 PMKRAGQPAELAPVYVYLASQESSYVTAEVHGVCGGE 291 (294)
T ss_dssp TTSSCBCGGGGHHHHHHHHSGGGTTCCSCEEEESTTC
T ss_pred CCCCCcCHHHHHHHHHHHhCccccCCCCCEEEECCCc
Confidence 6789999999999999999998877777777777765
|
| >3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-39 Score=317.78 Aligned_cols=247 Identities=21% Similarity=0.278 Sum_probs=209.2
Q ss_pred cccCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEE-cChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEE
Q 010380 170 EEHCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVAS-RSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGI 248 (512)
Q Consensus 170 ~~~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~-R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v 248 (512)
.+..+.++|++|||||++|||+++|++|+++|++|++++ |+.+..++..+++.+ .+.++.++
T Consensus 6 ~~~~~~~~k~vlITGas~giG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~ 68 (256)
T 3ezl_A 6 HHHMVMSQRIAYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKWLEDQKA-----------------LGFDFYAS 68 (256)
T ss_dssp -------CEEEEETTTTSHHHHHHHHHHHHTTEEEEEEECTTCSSHHHHHHHHHH-----------------TTCCCEEE
T ss_pred CCCCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHh-----------------cCCeeEEE
Confidence 345668899999999999999999999999999999988 667777776666654 35678899
Q ss_pred EccCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEE
Q 010380 249 ACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIF 328 (512)
Q Consensus 249 ~~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV 328 (512)
.+|++|+++++++++++.++++++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|.|+++ +.|+||
T Consensus 69 ~~Dv~~~~~v~~~~~~~~~~~g~id~lv~~Ag~~~-~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv 146 (256)
T 3ezl_A 69 EGNVGDWDSTKQAFDKVKAEVGEIDVLVNNAGITR-DVVFRKMTREDWQAVIDTNLTSLFNVTKQVIDGMVER-GWGRII 146 (256)
T ss_dssp ECCTTCHHHHHHHHHHHHHHTCCEEEEEECCCCCC-CCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEE
T ss_pred ecCCCCHHHHHHHHHHHHHhcCCCCEEEECCCCCC-CCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCEEE
Confidence 99999999999999999999999999999999987 5788899999999999999999999999999999887 568999
Q ss_pred eecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHH
Q 010380 329 NMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVAR 408 (512)
Q Consensus 329 ~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~ 408 (512)
++||. ++..+.++...|++||+|+++|+++++.|++++||+||+|+||+|+|+|........ .......
T Consensus 147 ~isS~-~~~~~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~----------~~~~~~~ 215 (256)
T 3ezl_A 147 NISSV-NGQKGQFGQTNYSTAKAGIHGFTMSLAQEVATKGVTVNTVSPGYIGTDMVKAIRPDV----------LEKIVAT 215 (256)
T ss_dssp EECCC-CGGGSCSCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTSCHHH----------HHHHHHH
T ss_pred EEcch-hhccCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCEEEEEEECcccCccccccCHHH----------HHHHHhc
Confidence 99998 677888999999999999999999999999999999999999999999875432111 1122344
Q ss_pred HhccccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 409 TLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 409 ~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
.+++++..|+|+++++.||+++...+.++..+..||++
T Consensus 216 ~~~~~~~~~~dva~~~~~l~s~~~~~~tG~~i~vdgG~ 253 (256)
T 3ezl_A 216 IPVRRLGSPDEIGSIVAWLASEESGFSTGADFSLNGGL 253 (256)
T ss_dssp STTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTS
T ss_pred CCCCCCcCHHHHHHHHHHHhCCcccCCcCcEEEECCCE
Confidence 56788999999999999999988766666666666665
|
| >3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-39 Score=323.53 Aligned_cols=229 Identities=19% Similarity=0.240 Sum_probs=193.8
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhh-------HHHHHHHHHHHHhhhhhhcCCCCcccccCceE
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSES-------VRMTVTELEENLKEGMMAAGGSSKKNLVHAKV 245 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~-------l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v 245 (512)
+++++|++|||||++|||+++|++|+++|++|++++|+.++ +++..+++.+ .+.++
T Consensus 2 ~~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~ 64 (274)
T 3e03_A 2 LTLSGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNA-----------------AGGQG 64 (274)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCSCCTTSCCCHHHHHHHHHH-----------------HTSEE
T ss_pred CCCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeccchhhhhhHHHHHHHHHHHHh-----------------cCCeE
Confidence 57899999999999999999999999999999999999764 4555555544 35789
Q ss_pred EEEEccCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCC
Q 010380 246 AGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGG 325 (512)
Q Consensus 246 ~~v~~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g 325 (512)
.++.||++|+++++++++++.+++|++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|+|+++ +.|
T Consensus 65 ~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lvnnAG~~~-~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g 142 (274)
T 3e03_A 65 LALKCDIREEDQVRAAVAATVDTFGGIDILVNNASAIW-LRGTLDTPMKRFDLMQQVNARGSFVCAQACLPHLLQA-PNP 142 (274)
T ss_dssp EEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCC-CCCGGGSCHHHHHHHHHHTHHHHHHHHHHHHHHHTTS-SSC
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHcCCCCEEEECCCccc-CCCcccCCHHHHHHHHhHhhHhHHHHHHHHHHHHHhc-CCc
Confidence 99999999999999999999999999999999999986 6788999999999999999999999999999999887 578
Q ss_pred eEEeecCCCCCCCC--CCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCC-cccCCcccCCcchhhhhhhhhhcCC
Q 010380 326 HIFNMDGAGSGGSS--TPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPG-MVLTDLLLSGSTIQNKQMFNIICEL 402 (512)
Q Consensus 326 ~IV~vSS~~a~~~~--~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG-~V~T~~~~~~~~~~~~~~~~~~~~~ 402 (512)
+||++||. ++..+ .++...|++||+|+++|+++|+.|++++||+||+|+|| +++|+|......
T Consensus 143 ~iv~isS~-~~~~~~~~~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG~~v~T~~~~~~~~------------- 208 (274)
T 3e03_A 143 HILTLAPP-PSLNPAWWGAHTGYTLAKMGMSLVTLGLAAEFGPQGVAINALWPRTVIATDAINMLPG------------- 208 (274)
T ss_dssp EEEECCCC-CCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECSBCBCC-------C-------------
T ss_pred eEEEECCh-HhcCCCCCCCCchHHHHHHHHHHHHHHHHHHhhhcCEEEEEEECCcccccchhhhccc-------------
Confidence 99999997 55555 56788999999999999999999999999999999999 699998622110
Q ss_pred HHHHHHHhccccccchhhhhhhhhcCChHHHHHHHHHH
Q 010380 403 PETVARTLVPRIRVVKGSGKAINYLTPPRILLALVTAW 440 (512)
Q Consensus 403 pe~vA~~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~ 440 (512)
....+...|+|+++++.||+++...+.++..+
T Consensus 209 ------~~~~~~~~pedvA~~v~~l~s~~~~~itG~~i 240 (274)
T 3e03_A 209 ------VDAAACRRPEIMADAAHAVLTREAAGFHGQFL 240 (274)
T ss_dssp ------CCGGGSBCTHHHHHHHHHHHTSCCTTCCSCEE
T ss_pred ------ccccccCCHHHHHHHHHHHhCccccccCCeEE
Confidence 11234678899999999999987655555544
|
| >4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-39 Score=321.65 Aligned_cols=247 Identities=22% Similarity=0.313 Sum_probs=206.9
Q ss_pred cccCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcC-hhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEE
Q 010380 170 EEHCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRS-SESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGI 248 (512)
Q Consensus 170 ~~~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~-~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v 248 (512)
...+++++|++|||||++|||+++|++|+++|++|++++|+ .+..+...+++.+ .+.++.++
T Consensus 22 ~~~m~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-----------------~~~~~~~~ 84 (271)
T 4iin_A 22 SNAMQFTGKNVLITGASKGIGAEIAKTLASMGLKVWINYRSNAEVADALKNELEE-----------------KGYKAAVI 84 (271)
T ss_dssp --CCCCSCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH-----------------TTCCEEEE
T ss_pred hhhcccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHh-----------------cCCceEEE
Confidence 44678999999999999999999999999999999999995 4445555555544 45689999
Q ss_pred EccCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEE
Q 010380 249 ACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIF 328 (512)
Q Consensus 249 ~~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV 328 (512)
.+|++|+++++++++++.+.++++|+||||||+.. ..++.+.+.++|++++++|+.|++++++.++|.|+++ +.|+||
T Consensus 85 ~~D~~~~~~v~~~~~~~~~~~g~id~li~nAg~~~-~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~g~iv 162 (271)
T 4iin_A 85 KFDAASESDFIEAIQTIVQSDGGLSYLVNNAGVVR-DKLAIKMKTEDFHHVIDNNLTSAFIGCREALKVMSKS-RFGSVV 162 (271)
T ss_dssp ECCTTCHHHHHHHHHHHHHHHSSCCEEEECCCCCC-CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEE
T ss_pred ECCCCCHHHHHHHHHHHHHhcCCCCEEEECCCcCC-CcccccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhc-CCCEEE
Confidence 99999999999999999999999999999999987 5788899999999999999999999999999999886 568999
Q ss_pred eecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHH
Q 010380 329 NMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVAR 408 (512)
Q Consensus 329 ~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~ 408 (512)
++||. ++..+.++...|++||+|++.|+++++.|++++||+||+|+||+|+|+|......... ......
T Consensus 163 ~isS~-~~~~~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~----------~~~~~~ 231 (271)
T 4iin_A 163 NVASI-IGERGNMGQTNYSASKGGMIAMSKSFAYEGALRNIRFNSVTPGFIETDMNANLKDELK----------ADYVKN 231 (271)
T ss_dssp EECCH-HHHHCCTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCCC----------------------CGGG
T ss_pred EEech-hhcCCCCCchHhHHHHHHHHHHHHHHHHHHHHhCcEEEEEEeCcccCCchhhhcHHHH----------HHHHhc
Confidence 99997 5677888999999999999999999999999999999999999999998754321110 111223
Q ss_pred HhccccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 409 TLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 409 ~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
.+++++..|+|+++++.||+++...+.++..+..||+|
T Consensus 232 ~~~~~~~~p~dvA~~i~~l~s~~~~~itG~~i~vdGG~ 269 (271)
T 4iin_A 232 IPLNRLGSAKEVAEAVAFLLSDHSSYITGETLKVNGGL 269 (271)
T ss_dssp CTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTS
T ss_pred CCcCCCcCHHHHHHHHHHHhCCCcCCCcCCEEEeCCCe
Confidence 45678899999999999999988777777777777765
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-39 Score=321.24 Aligned_cols=240 Identities=23% Similarity=0.243 Sum_probs=190.2
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
+++++|++|||||++|||+++|++|+++|++|++++|+.+++++..+++ +.++.++.+|+
T Consensus 3 ~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~--------------------~~~~~~~~~Dv 62 (257)
T 3tpc_A 3 MQLKSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAEL--------------------GAAVRFRNADV 62 (257)
T ss_dssp -CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC--------------------------------CEEEECCT
T ss_pred cccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh--------------------CCceEEEEccC
Confidence 4688999999999999999999999999999999999998877665544 24678899999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCC----cCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-----CC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPL----LQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQ-----PK 323 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~----~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~-----~~ 323 (512)
+|+++++++++++.+++|++|+||||||+.. ..++ .+.+.++|++++++|+.|+++++++++|+|+++ .+
T Consensus 63 ~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~-~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~~ 141 (257)
T 3tpc_A 63 TNEADATAALAFAKQEFGHVHGLVNCAGTAP-GEKILGRSGPHALDSFARTVAVNLIGTFNMIRLAAEVMSQGEPDADGE 141 (257)
T ss_dssp TCHHHHHHHHHHHHHHHSCCCEEEECCCCCC-CCCSEETTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSC
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCCCC-CCccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccCCCC
Confidence 9999999999999999999999999999876 3333 368899999999999999999999999999875 25
Q ss_pred CCeEEeecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCH
Q 010380 324 GGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELP 403 (512)
Q Consensus 324 ~g~IV~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~p 403 (512)
.|+||++||. ++..+.++...|++||+|+++|+++++.|++++||+||+|+||+|+|++......... .
T Consensus 142 ~g~iv~isS~-~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~----------~ 210 (257)
T 3tpc_A 142 RGVIVNTASI-AAFDGQIGQAAYAASKGGVAALTLPAARELARFGIRVVTIAPGIFDTPMMAGMPQDVQ----------D 210 (257)
T ss_dssp CEEEEEECCT-HHHHCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBSCC---------------------
T ss_pred CeEEEEEech-hhccCCCCCcchHHHHHHHHHHHHHHHHHHHHcCeEEEEEEeCCCCChhhccCCHHHH----------H
Confidence 7899999998 6777888999999999999999999999999999999999999999998754221110 0
Q ss_pred HHHHHHhc-cccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 404 ETVARTLV-PRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 404 e~vA~~~l-~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
......++ +++..|+|++.++.||+++ .+.++..+..||++
T Consensus 211 ~~~~~~p~~~r~~~~~dva~~v~~l~s~--~~itG~~i~vdGG~ 252 (257)
T 3tpc_A 211 ALAASVPFPPRLGRAEEYAALVKHICEN--TMLNGEVIRLDGAL 252 (257)
T ss_dssp ---CCSSSSCSCBCHHHHHHHHHHHHHC--TTCCSCEEEESTTC
T ss_pred HHHhcCCCCCCCCCHHHHHHHHHHHccc--CCcCCcEEEECCCc
Confidence 11122345 7889999999999999975 34556666666655
|
| >1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-38 Score=320.57 Aligned_cols=244 Identities=16% Similarity=0.187 Sum_probs=206.9
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEE-cChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVAS-RSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~-R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
++++|++|||||++|||+++|++|+++|++|++++ |+.++++++.+++.+. .+.++.++.+|+
T Consensus 6 ~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~r~~~~~~~~~~~l~~~----------------~~~~~~~~~~Dl 69 (291)
T 1e7w_A 6 APTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNAR----------------RPNSAITVQADL 69 (291)
T ss_dssp --CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHH----------------STTCEEEEECCC
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHhhh----------------cCCeeEEEEeec
Confidence 57899999999999999999999999999999999 9998888887777531 345789999999
Q ss_pred CChh-----------------hHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCC--------------HHHHHHHHH
Q 010380 253 CEPA-----------------DVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFT--------------NEEIEQIVS 301 (512)
Q Consensus 253 td~~-----------------sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s--------------~e~~~~~~~ 301 (512)
+|++ +++++++++.+++|++|+||||||+.. ..++.+.+ .++|+++++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (291)
T 1e7w_A 70 SNVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFY-PTPLLRNDEDGHEPCVGDREAMETATADLFG 148 (291)
T ss_dssp SSSCBCCCC----CCCBCHHHHHHHHHHHHHHHHSCCCEEEECCCCCC-CCCCCC-------------HHHHHHHHHHHH
T ss_pred CCcccccccccccccccchHHHHHHHHHHHHHhcCCCCEEEECCCCCC-CCChhhcCccccccccccccccHHHHHHHHH
Confidence 9999 999999999999999999999999876 56788888 999999999
Q ss_pred hhhhhHHHHHHHHHHHHHhCCC-----CCeEEeecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeC
Q 010380 302 TNLVGSILCTREAMRVMRDQPK-----GGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASP 376 (512)
Q Consensus 302 vNv~g~~~l~k~~lp~m~~~~~-----~g~IV~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~P 376 (512)
+|+.|+++++++++|.|++++. .|+||++||. .+..+.++...|++||+|+++|+++|+.|++++||+||+|+|
T Consensus 149 ~N~~g~~~l~~~~~~~m~~~~~~~~~~~g~Iv~isS~-~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~P 227 (291)
T 1e7w_A 149 SNAIAPYFLIKAFAHRVAGTPAKHRGTNYSIINMVDA-MTNQPLLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGP 227 (291)
T ss_dssp HHTHHHHHHHHHHHHHHHTSCGGGSCSCEEEEEECCT-TTTSCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE
T ss_pred HHhHHHHHHHHHHHHHHHhcCCCCCCCCcEEEEEech-hhcCCCCCCchhHHHHHHHHHHHHHHHHHHHhcCeEEEEEee
Confidence 9999999999999999987631 6899999998 677788999999999999999999999999999999999999
Q ss_pred CcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhcc-ccccchhhhhhhhhcCChHHHHHHHHHHhccCccc
Q 010380 377 GMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVP-RIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWF 447 (512)
Q Consensus 377 G~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~-r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~ 447 (512)
|+|+|+| . . . .... .......+++ ++..|+|+++++.||+++...+.++..+..||++.
T Consensus 228 G~v~T~~-~-~-~---~~~~------~~~~~~~p~~~r~~~pedvA~~v~~l~s~~~~~itG~~i~vdGG~~ 287 (291)
T 1e7w_A 228 GLSVLVD-D-M-P---PAVW------EGHRSKVPLYQRDSSAAEVSDVVIFLCSSKAKYITGTCVKVDGGYS 287 (291)
T ss_dssp SSBCCGG-G-S-C---HHHH------HHHHTTCTTTTSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred CCccCCc-c-C-C---HHHH------HHHHhhCCCCCCCCCHHHHHHHHHHHhCCcccCccCcEEEECCCcc
Confidence 9999998 3 2 1 1111 0111224566 88999999999999999887777777777777663
|
| >4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-38 Score=317.58 Aligned_cols=225 Identities=29% Similarity=0.428 Sum_probs=183.4
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
++.+|++|||||++|||+++|++|+++|++|++++|+.++++++.+++ +.++.++.||++
T Consensus 25 ~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~--------------------~~~~~~~~~Dv~ 84 (272)
T 4dyv_A 25 KTGKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEI--------------------GDDALCVPTDVT 84 (272)
T ss_dssp ---CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH--------------------TSCCEEEECCTT
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh--------------------CCCeEEEEecCC
Confidence 578999999999999999999999999999999999998887766654 246788999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCC-CCCeEEeecC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQP-KGGHIFNMDG 332 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~-~~g~IV~vSS 332 (512)
|+++++++++++.+++|++|+||||||+..+..++.+.+.++|++++++|+.|+++++++++|.|++++ ++|+||++||
T Consensus 85 d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS 164 (272)
T 4dyv_A 85 DPDSVRALFTATVEKFGRVDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCTQEAFRVMKAQEPRGGRIINNGS 164 (272)
T ss_dssp SHHHHHHHHHHHHHHHSCCCEEEECCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECC
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCCcEEEEECc
Confidence 999999999999999999999999999976447889999999999999999999999999999999863 2689999999
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhcc
Q 010380 333 AGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVP 412 (512)
Q Consensus 333 ~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~ 412 (512)
. ++..+.++...|++||+|+++|+++|+.|++++||+||+|+||+|+|+|....... .++.....+..
T Consensus 165 ~-~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~-----------~~~~~~~~~~~ 232 (272)
T 4dyv_A 165 I-SATSPRPYSAPYTATKHAITGLTKSTSLDGRVHDIACGQIDIGNADTPMAQKMKAG-----------VPQADLSIKVE 232 (272)
T ss_dssp S-STTSCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEEECC--------------------------------
T ss_pred h-hhcCCCCCchHHHHHHHHHHHHHHHHHHHhCccCEEEEEEEECcccChhhhhhccc-----------chhhhhccccc
Confidence 8 67888899999999999999999999999999999999999999999987542211 11222234556
Q ss_pred ccccchhhhhhhhhcCCh
Q 010380 413 RIRVVKGSGKAINYLTPP 430 (512)
Q Consensus 413 r~~~~~~va~~v~~L~s~ 430 (512)
++..|+|+++++.||++.
T Consensus 233 ~~~~pedvA~~v~fL~s~ 250 (272)
T 4dyv_A 233 PVMDVAHVASAVVYMASL 250 (272)
T ss_dssp ---CHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHhCC
Confidence 778999999999999874
|
| >2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-38 Score=313.67 Aligned_cols=241 Identities=21% Similarity=0.322 Sum_probs=197.0
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcCh-hhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSS-ESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~-~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
++++|++|||||++|||+++|++|+++|++|++++|++ +++++ ++.+ .+.++.++.+|+
T Consensus 4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~---~~~~-----------------~~~~~~~~~~Dv 63 (249)
T 2ew8_A 4 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEA---AIRN-----------------LGRRVLTVKCDV 63 (249)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHH---HHHH-----------------TTCCEEEEECCT
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCchhHHHH---HHHh-----------------cCCcEEEEEeec
Confidence 47899999999999999999999999999999999998 66544 3322 245788999999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|+++++++++++.++++++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|.|+++ +.|+||++||
T Consensus 64 ~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~-~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv~isS 141 (249)
T 2ew8_A 64 SQPGDVEAFGKQVISTFGRCDILVNNAGIYP-LIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRN-GWGRIINLTS 141 (249)
T ss_dssp TCHHHHHHHHHHHHHHHSCCCEEEECCCCCC-CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECC
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCCCC-CCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCeEEEEEcc
Confidence 9999999999999999999999999999876 5778899999999999999999999999999999876 4689999999
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCccc-CCcchhhhhhhhhhcCCHHHHHHHhc
Q 010380 333 AGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLL-SGSTIQNKQMFNIICELPETVARTLV 411 (512)
Q Consensus 333 ~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~-~~~~~~~~~~~~~~~~~pe~vA~~~l 411 (512)
. .+..+.++...|++||+|++.|+++++.|++++||+||+|+||+|+|++.. ...... ..... ... .++
T Consensus 142 ~-~~~~~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~-~~~~~-------~~~-~~~ 211 (249)
T 2ew8_A 142 T-TYWLKIEAYTHYISTKAANIGFTRALASDLGKDGITVNAIAPSLVRTATTEASALSAM-FDVLP-------NML-QAI 211 (249)
T ss_dssp G-GGGSCCSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCC--------------------------CTT-SSS
T ss_pred h-hhccCCCCchhHHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcCcCccchhccccch-hhHHH-------Hhh-Ccc
Confidence 8 567778889999999999999999999999999999999999999999864 211000 00000 001 356
Q ss_pred cccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 412 PRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 412 ~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
+++..|+|+++++.||+++...+.++..+..+|++
T Consensus 212 ~~~~~p~dva~~~~~l~s~~~~~~tG~~~~vdGG~ 246 (249)
T 2ew8_A 212 PRLQVPLDLTGAAAFLASDDASFITGQTLAVDGGM 246 (249)
T ss_dssp CSCCCTHHHHHHHHHHTSGGGTTCCSCEEEESSSC
T ss_pred CCCCCHHHHHHHHHHHcCcccCCCCCcEEEECCCc
Confidence 78899999999999999987666666666666654
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-38 Score=321.56 Aligned_cols=248 Identities=15% Similarity=0.153 Sum_probs=206.5
Q ss_pred CCCCCCEEEEECCC--ChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEc
Q 010380 173 CKAGPRNVVITGST--RGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIAC 250 (512)
Q Consensus 173 ~~l~gk~vLVTGas--sGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~ 250 (512)
.++++|++|||||+ +|||+++|++|+++|++|++++|+++.. +..+++.+. ..++.++.|
T Consensus 27 ~~l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~-~~~~~~~~~-----------------~~~~~~~~~ 88 (293)
T 3grk_A 27 GLLQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALK-KRVEPLAEE-----------------LGAFVAGHC 88 (293)
T ss_dssp CTTTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHH-HHHHHHHHH-----------------HTCEEEEEC
T ss_pred ccCCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHH-HHHHHHHHh-----------------cCCceEEEC
Confidence 45899999999999 5699999999999999999999995433 333444332 235788999
Q ss_pred cCCChhhHHHHHHHHHHHcCCCcccccccccCCC---CCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeE
Q 010380 251 DVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKG---FKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHI 327 (512)
Q Consensus 251 Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~---~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~I 327 (512)
|++|+++++++++++.+++|+||+||||||+..+ ..++.+.+.++|++++++|+.++++++++++|+|++ +|+|
T Consensus 89 Dv~d~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~---~g~I 165 (293)
T 3grk_A 89 DVADAASIDAVFETLEKKWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMAD---GGSI 165 (293)
T ss_dssp CTTCHHHHHHHHHHHHHHTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTT---CEEE
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccC---CCEE
Confidence 9999999999999999999999999999998742 367889999999999999999999999999999974 6899
Q ss_pred EeecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHH
Q 010380 328 FNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVA 407 (512)
Q Consensus 328 V~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA 407 (512)
|++||. ++..+.++...|++||+|+++|+++|+.|++++||+||+|+||+|+|++........ .. ......
T Consensus 166 v~isS~-~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~--~~------~~~~~~ 236 (293)
T 3grk_A 166 LTLTYY-GAEKVMPNYNVMGVAKAALEASVKYLAVDLGPQNIRVNAISAGPIKTLAASGIGDFR--YI------LKWNEY 236 (293)
T ss_dssp EEEECG-GGTSBCTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCC------CCHH--HH------HHHHHH
T ss_pred EEEeeh-hhccCCCchHHHHHHHHHHHHHHHHHHHHHhHhCCEEEEEecCCCcchhhhcccchH--HH------HHHHHh
Confidence 999998 677888999999999999999999999999999999999999999999865422111 11 122334
Q ss_pred HHhccccccchhhhhhhhhcCChHHHHHHHHHHhccCcccccc
Q 010380 408 RTLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWFDDQ 450 (512)
Q Consensus 408 ~~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~~~~ 450 (512)
..+++++..|+|+++++.||+++...+.++..+..||++....
T Consensus 237 ~~p~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG~~~~~ 279 (293)
T 3grk_A 237 NAPLRRTVTIDEVGDVGLYFLSDLSRSVTGEVHHADSGYHVIG 279 (293)
T ss_dssp HSTTSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGGBC
T ss_pred cCCCCCCCCHHHHHHHHHHHcCccccCCcceEEEECCCcccCC
Confidence 5678899999999999999999988888888888888885544
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-39 Score=325.17 Aligned_cols=247 Identities=19% Similarity=0.227 Sum_probs=208.2
Q ss_pred cCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEcc
Q 010380 172 HCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACD 251 (512)
Q Consensus 172 ~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~D 251 (512)
..++++|++|||||++|||+++|++|+++|++|++++|+.+...+...+..+. .+.++.++.+|
T Consensus 42 ~~~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~----------------~~~~~~~~~~D 105 (291)
T 3ijr_A 42 SEKLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEK----------------EGVKCVLLPGD 105 (291)
T ss_dssp CSTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHT----------------TTCCEEEEESC
T ss_pred ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHh----------------cCCcEEEEECC
Confidence 45689999999999999999999999999999999999976543333332221 35689999999
Q ss_pred CCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeec
Q 010380 252 VCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD 331 (512)
Q Consensus 252 ltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vS 331 (512)
++|+++++++++++.+++|++|+||||||+..+..++.+.+.++|++++++|+.|+++++++++|+|++ +|+||++|
T Consensus 106 v~d~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~---~g~iv~is 182 (291)
T 3ijr_A 106 LSDEQHCKDIVQETVRQLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQ---GDVIINTA 182 (291)
T ss_dssp TTSHHHHHHHHHHHHHHHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCT---TCEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhh---CCEEEEEe
Confidence 999999999999999999999999999998764567889999999999999999999999999999964 57999999
Q ss_pred CCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhc
Q 010380 332 GAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLV 411 (512)
Q Consensus 332 S~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l 411 (512)
|. ++..+.++...|++||+|+++|+++|+.|++++||+||+|+||+|+|++........ .. .......++
T Consensus 183 S~-~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~---~~------~~~~~~~p~ 252 (291)
T 3ijr_A 183 SI-VAYEGNETLIDYSATKGAIVAFTRSLSQSLVQKGIRVNGVAPGPIWTPLIPSSFDEK---KV------SQFGSNVPM 252 (291)
T ss_dssp CT-HHHHCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSTHHHHHSCHH---HH------HHTTTTSTT
T ss_pred ch-HhcCCCCCChhHHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeCCCcCCcccccCCHH---HH------HHHHccCCC
Confidence 98 667778889999999999999999999999999999999999999999853211110 00 011123467
Q ss_pred cccccchhhhhhhhhcCChHHHHHHHHHHhccCccc
Q 010380 412 PRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWF 447 (512)
Q Consensus 412 ~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~ 447 (512)
+++..|+|+++++.||+++...+.++..+..||++.
T Consensus 253 ~r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG~~ 288 (291)
T 3ijr_A 253 QRPGQPYELAPAYVYLASSDSSYVTGQMIHVNGGVI 288 (291)
T ss_dssp SSCBCGGGTHHHHHHHHSGGGTTCCSCEEEESSSCC
T ss_pred CCCcCHHHHHHHHHHHhCCccCCCcCCEEEECCCcc
Confidence 889999999999999999988777787787777764
|
| >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-38 Score=312.75 Aligned_cols=238 Identities=22% Similarity=0.270 Sum_probs=202.4
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
|++++|+++||||++|||+++|++|+++|++|++++|+.+++++..++ .+ +.++.+|+
T Consensus 1 m~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~--------------------~~--~~~~~~D~ 58 (245)
T 1uls_A 1 MRLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEA--------------------VG--AHPVVMDV 58 (245)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT--------------------TT--CEEEECCT
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH--------------------cC--CEEEEecC
Confidence 357899999999999999999999999999999999998776544322 12 67789999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|+++++++++++.+++|++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|.|+++ +.|+||++||
T Consensus 59 ~~~~~~~~~~~~~~~~~g~id~lvn~Ag~~~-~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~-~~g~iv~isS 136 (245)
T 1uls_A 59 ADPASVERGFAEALAHLGRLDGVVHYAGITR-DNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREK-NPGSIVLTAS 136 (245)
T ss_dssp TCHHHHHHHHHHHHHHHSSCCEEEECCCCCC-CCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-CCEEEEEECC
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCCCC-CCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCCEEEEEcc
Confidence 9999999999999999999999999999876 5778899999999999999999999999999999876 5789999999
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhcc
Q 010380 333 AGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVP 412 (512)
Q Consensus 333 ~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~ 412 (512)
. + ..+.++...|++||+|+++|+++++.|++++||+||+|+||+|+|++...... ... .......+++
T Consensus 137 ~-~-~~~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~----~~~------~~~~~~~p~~ 204 (245)
T 1uls_A 137 R-V-YLGNLGQANYAASMAGVVGLTRTLALELGRWGIRVNTLAPGFIETRMTAKVPE----KVR------EKAIAATPLG 204 (245)
T ss_dssp G-G-GGCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTSSSCH----HHH------HHHHHTCTTC
T ss_pred c-h-hcCCCCchhHHHHHHHHHHHHHHHHHHHhHhCeEEEEEEeCcCcCcchhhcCH----HHH------HHHHhhCCCC
Confidence 8 4 66778889999999999999999999999999999999999999998643211 000 1112234567
Q ss_pred ccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 413 RIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 413 r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
++..|+|+++.+.||+++...+.++..+..+|++
T Consensus 205 ~~~~~~dvA~~v~~l~s~~~~~~tG~~~~vdgG~ 238 (245)
T 1uls_A 205 RAGKPLEVAYAALFLLSDESSFITGQVLFVDGGR 238 (245)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred CCcCHHHHHHHHHHHhCchhcCCcCCEEEECCCc
Confidence 8899999999999999987766666666666665
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-38 Score=315.85 Aligned_cols=251 Identities=22% Similarity=0.330 Sum_probs=208.0
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
+++++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+. .+.++.++.+|+
T Consensus 3 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~----------------~~~~~~~~~~D~ 66 (263)
T 3ai3_A 3 MGISGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEK----------------FGVRVLEVAVDV 66 (263)
T ss_dssp CCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH----------------HCCCEEEEECCT
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHh----------------cCCceEEEEcCC
Confidence 4678999999999999999999999999999999999998888777776542 145788999999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|+++++++++++.+++|++|+||||||+.. ..++.+.+.++|++++++|+.++++++++++|.|+++ +.|+||++||
T Consensus 67 ~~~~~~~~~~~~~~~~~g~id~lv~~Ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~g~iv~isS 144 (263)
T 3ai3_A 67 ATPEGVDAVVESVRSSFGGADILVNNAGTGS-NETIMEAADEKWQFYWELLVMAAVRLARGLVPGMRAR-GGGAIIHNAS 144 (263)
T ss_dssp TSHHHHHHHHHHHHHHHSSCSEEEECCCCCC-CCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECC
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCCCC-CCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCcEEEEECc
Confidence 9999999999999999999999999999876 5788899999999999999999999999999999876 4689999999
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcC-CH---HHH-H
Q 010380 333 AGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICE-LP---ETV-A 407 (512)
Q Consensus 333 ~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~-~p---e~v-A 407 (512)
. ++..+.++...|++||+|++.|+++++.|++++||+||+|+||+|.||+...... ........ .+ +.. .
T Consensus 145 ~-~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 219 (263)
T 3ai3_A 145 I-CAVQPLWYEPIYNVTKAALMMFSKTLATEVIKDNIRVNCINPGLILTPDWIKTAK----ELTKDNGGDWKGYLQSVAD 219 (263)
T ss_dssp G-GGTSCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHHHHH----HHTTTTTCCHHHHHHHHHH
T ss_pred h-hhcCCCCCcchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCcchhhhhH----hhhcccCCcHHHHHHHHHh
Confidence 8 6777788899999999999999999999999999999999999999998532100 00000000 01 111 2
Q ss_pred H-HhccccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 408 R-TLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 408 ~-~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
. .+++++..|+|+++++.||+++...+.++..+..+|++
T Consensus 220 ~~~p~~~~~~~~dvA~~~~~l~s~~~~~~~G~~~~vdgG~ 259 (263)
T 3ai3_A 220 EHAPIKRFASPEELANFFVFLCSERATYSVGSAYFVDGGM 259 (263)
T ss_dssp HHCTTCSCBCHHHHHHHHHHHTSTTCTTCCSCEEEESTTC
T ss_pred cCCCCCCCcCHHHHHHHHHHHcCccccCCCCcEEEECCCc
Confidence 2 46778899999999999999876555555555555554
|
| >3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-39 Score=323.45 Aligned_cols=244 Identities=23% Similarity=0.359 Sum_probs=205.6
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCC---EEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEc
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGD---RVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIAC 250 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga---~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~ 250 (512)
++++|++|||||++|||+++|++|+++|+ +|++++|+.++++++.+++.+.. .+.++.++.|
T Consensus 30 ~l~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~---------------~~~~~~~~~~ 94 (287)
T 3rku_A 30 RLAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEF---------------PNAKVHVAQL 94 (287)
T ss_dssp HHTTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHC---------------TTCEEEEEEC
T ss_pred hcCCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhC---------------CCCeEEEEEC
Confidence 46899999999999999999999999998 99999999999988888886532 2468999999
Q ss_pred cCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEee
Q 010380 251 DVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNM 330 (512)
Q Consensus 251 Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~v 330 (512)
|++|+++++++++++.+++|+||+||||||+..+..++.+.+.++|++++++|+.|+++++++++|.|+++ +.|+||++
T Consensus 95 Dv~d~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~IV~i 173 (287)
T 3rku_A 95 DITQAEKIKPFIENLPQEFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALINITQAVLPIFQAK-NSGDIVNL 173 (287)
T ss_dssp CTTCGGGHHHHHHTSCGGGCSCCEEEECCCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeEEEE
Confidence 99999999999999999999999999999987645778999999999999999999999999999999876 57899999
Q ss_pred cCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHh
Q 010380 331 DGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTL 410 (512)
Q Consensus 331 SS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~ 410 (512)
||. ++..+.++...|++||+|+++|+++|+.|++++||+||+|+||+|+|+|...... ..++......
T Consensus 174 sS~-~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~-----------~~~~~~~~~~ 241 (287)
T 3rku_A 174 GSI-AGRDAYPTGSIYCASKFAVGAFTDSLRKELINTKIRVILIAPGLVETEFSLVRYR-----------GNEEQAKNVY 241 (287)
T ss_dssp CCG-GGTSCCTTCHHHHHHHHHHHHHHHHHHHHTTTSSCEEEEEEESCEESSHHHHHTT-----------TCHHHHHHHH
T ss_pred CCh-hhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhcCCEEEEEeCCcCcCcccccccc-----------CcHHHHHHhh
Confidence 998 6788889999999999999999999999999999999999999999998532110 0112111111
Q ss_pred -ccccccchhhhhhhhhcCChHHHHHHHHHHhccCc
Q 010380 411 -VPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGR 445 (512)
Q Consensus 411 -l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~ 445 (512)
......|+|+++++.||+++...+.++..+..+++
T Consensus 242 ~~~~p~~pedvA~~v~~l~s~~~~~i~g~~i~v~~g 277 (287)
T 3rku_A 242 KDTTPLMADDVADLIVYATSRKQNTVIADTLIFPTN 277 (287)
T ss_dssp TTSCCEEHHHHHHHHHHHHTSCTTEEEEEEEEEETT
T ss_pred cccCCCCHHHHHHHHHHHhCCCCCeEecceEEeeCC
Confidence 11223789999999999998765555555555444
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-38 Score=307.96 Aligned_cols=226 Identities=27% Similarity=0.377 Sum_probs=195.4
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
++++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+ .+.++.++.+|++
T Consensus 4 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~-----------------~~~~~~~~~~Dv~ 66 (247)
T 2jah_A 4 ALQGKVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTA-----------------AGAKVHVLELDVA 66 (247)
T ss_dssp TTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-----------------TTCCEEEEECCTT
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh-----------------cCCcEEEEECCCC
Confidence 47899999999999999999999999999999999999888887777754 3457889999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
|+++++++++++.+++|++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|.|+++ + |+||++||.
T Consensus 67 ~~~~~~~~~~~~~~~~g~id~lv~nAg~~~-~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~-g~iv~isS~ 143 (247)
T 2jah_A 67 DRQGVDAAVASTVEALGGLDILVNNAGIML-LGPVEDADTTDWTRMIDTNLLGLMYMTRAALPHLLRS-K-GTVVQMSSI 143 (247)
T ss_dssp CHHHHHHHHHHHHHHHSCCSEEEECCCCCC-CCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-T-CEEEEECCG
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCC-CCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHC-C-CEEEEEccH
Confidence 999999999999999999999999999876 6788899999999999999999999999999999876 3 899999998
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhccc
Q 010380 334 GSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPR 413 (512)
Q Consensus 334 ~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~r 413 (512)
++..+.++...|++||+|+++|+++|+.|++++||+||+|+||+|+|+|........ . .+.....+ .+
T Consensus 144 -~~~~~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~---~-------~~~~~~~~-~~ 211 (247)
T 2jah_A 144 -AGRVNVRNAAVYQATKFGVNAFSETLRQEVTERGVRVVVIEPGTTDTELRGHITHTA---T-------KEMYEQRI-SQ 211 (247)
T ss_dssp -GGTCCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBSSSGGGGCCCHH---H-------HHHHHHHT-TT
T ss_pred -HhcCCCCCCcHHHHHHHHHHHHHHHHHHHhcccCcEEEEEECCCCCCcchhcccchh---h-------HHHHHhcc-cc
Confidence 677788899999999999999999999999999999999999999999864321110 0 01111222 44
Q ss_pred c--ccchhhhhhhhhcCChH
Q 010380 414 I--RVVKGSGKAINYLTPPR 431 (512)
Q Consensus 414 ~--~~~~~va~~v~~L~s~~ 431 (512)
+ ..|+|+++.+.||+++.
T Consensus 212 ~~~~~pedvA~~v~~l~s~~ 231 (247)
T 2jah_A 212 IRKLQAQDIAEAVRYAVTAP 231 (247)
T ss_dssp SCCBCHHHHHHHHHHHHHSC
T ss_pred cCCCCHHHHHHHHHHHhCCC
Confidence 5 78899999999988754
|
| >3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-39 Score=316.29 Aligned_cols=247 Identities=22% Similarity=0.328 Sum_probs=205.4
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhh--HHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCC
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSES--VRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCE 254 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~--l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd 254 (512)
+|++|||||++|||+++|++|+++|++|++++|+.++ ++++.+++.+ .+.++.++.+|++|
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~Dv~~ 64 (258)
T 3a28_C 2 SKVAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLIEA-----------------ADQKAVFVGLDVTD 64 (258)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECGGGHHHHHHHHHHHHT-----------------TTCCEEEEECCTTC
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHHh-----------------cCCcEEEEEccCCC
Confidence 6899999999999999999999999999999999877 6666666543 24578899999999
Q ss_pred hhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCC
Q 010380 255 PADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAG 334 (512)
Q Consensus 255 ~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~ 334 (512)
+++++++++++.+++|++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|.|++++.+|+||++||.
T Consensus 65 ~~~v~~~~~~~~~~~g~iD~lv~nAg~~~-~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~- 142 (258)
T 3a28_C 65 KANFDSAIDEAAEKLGGFDVLVNNAGIAQ-IKPLLEVTEEDLKQIYSVNVFSVFFGIQAASRKFDELGVKGKIINAASI- 142 (258)
T ss_dssp HHHHHHHHHHHHHHHTCCCEEEECCCCCC-CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCCEEEEECCG-
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECCCCCC-CCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCcEEEEECcc-
Confidence 99999999999999999999999999876 5788899999999999999999999999999999876323899999998
Q ss_pred CCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcC-CHH---H-HHHH
Q 010380 335 SGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICE-LPE---T-VART 409 (512)
Q Consensus 335 a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~-~pe---~-vA~~ 409 (512)
++..+.++...|++||+++++|+++++.|++++||+||+|+||+|+|+|...... ........ .++ . ....
T Consensus 143 ~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 218 (258)
T 3a28_C 143 AAIQGFPILSAYSTTKFAVRGLTQAAAQELAPKGHTVNAYAPGIVGTGMWEQIDA----ELSKINGKPIGENFKEYSSSI 218 (258)
T ss_dssp GGTSCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSHHHHHHHH----HHHHHHCCCTTHHHHHHHTTC
T ss_pred hhccCCCCchhHHHHHHHHHHHHHHHHHHHHhhCeEEEEEECCccCChhhhhhhh----hhccccCCchHHHHHHHHhcC
Confidence 6777888899999999999999999999999999999999999999998632100 00000000 011 1 1224
Q ss_pred hccccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 410 LVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 410 ~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
+++++..|+|+++++.||+++...+.++..+..||++
T Consensus 219 p~~r~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdGG~ 255 (258)
T 3a28_C 219 ALGRPSVPEDVAGLVSFLASENSNYVTGQVMLVDGGM 255 (258)
T ss_dssp TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESSSS
T ss_pred CCCCccCHHHHHHHHHHHhCcccCCCCCCEEEECCCE
Confidence 5678899999999999999988766666666666665
|
| >2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-39 Score=323.17 Aligned_cols=265 Identities=12% Similarity=0.107 Sum_probs=217.0
Q ss_pred CCCCCEEEEECCC--ChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEcc
Q 010380 174 KAGPRNVVITGST--RGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACD 251 (512)
Q Consensus 174 ~l~gk~vLVTGas--sGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~D 251 (512)
++++|++|||||+ +|||+++|++|+++|++|++++|+.+ .++..+++.+. . ..+.++.+|
T Consensus 3 ~l~~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~~-~~~~~~~l~~~----------------~-~~~~~~~~D 64 (275)
T 2pd4_A 3 FLKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES-LEKRVRPIAQE----------------L-NSPYVYELD 64 (275)
T ss_dssp TTTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT-THHHHHHHHHH----------------T-TCCCEEECC
T ss_pred CCCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCHH-HHHHHHHHHHh----------------c-CCcEEEEcC
Confidence 3679999999999 99999999999999999999999976 44555555442 1 236789999
Q ss_pred CCChhhHHHHHHHHHHHcCCCcccccccccCCC---CCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEE
Q 010380 252 VCEPADVQKLSNFAVNEFGSIDIWINNAGTNKG---FKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIF 328 (512)
Q Consensus 252 ltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~---~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV 328 (512)
++|+++++++++++.+++|++|+||||||+... ..++.+.+.++|++++++|+.|+++++++++|.|++ +|+||
T Consensus 65 ~~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~---~g~iv 141 (275)
T 2pd4_A 65 VSKEEHFKSLYNSVKKDLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNN---GASVL 141 (275)
T ss_dssp TTCHHHHHHHHHHHHHHTSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEE---EEEEE
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhcc---CCEEE
Confidence 999999999999999999999999999998652 256788999999999999999999999999999974 48999
Q ss_pred eecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHH
Q 010380 329 NMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVAR 408 (512)
Q Consensus 329 ~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~ 408 (512)
++||. ++..+.++...|++||+|+++|+++++.|++++||+||+|+||+|+|++....... .... ......
T Consensus 142 ~isS~-~~~~~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~--~~~~------~~~~~~ 212 (275)
T 2pd4_A 142 TLSYL-GSTKYMAHYNVMGLAKAALESAVRYLAVDLGKHHIRVNALSAGPIRTLASSGIADF--RMIL------KWNEIN 212 (275)
T ss_dssp EEECG-GGTSBCTTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCTTGGGSTTH--HHHH------HHHHHH
T ss_pred EEecc-hhcCCCCCchhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCccccchhhhcccc--HHHH------HHHHhc
Confidence 99997 67778888999999999999999999999999999999999999999986432110 0000 111234
Q ss_pred HhccccccchhhhhhhhhcCChHHHHHHHHHHhccCccccc--chhhhhHHHHHHHHHHHHH
Q 010380 409 TLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWFDD--QGRALYAAEADRIRNWAEN 468 (512)
Q Consensus 409 ~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~rl~~w~~~ 468 (512)
.+++++..|+++++.+.||+++...+.++..+..+|++... .....+...+++||+++++
T Consensus 213 ~p~~~~~~p~dva~~~~~l~s~~~~~~tG~~~~vdgg~~~~~~~~~~~~~~~~~~lw~~s~~ 274 (275)
T 2pd4_A 213 APLRKNVSLEEVGNAGMYLLSSLSSGVSGEVHFVDAGYHVMGMGAVEEKDNKATLLWDLHKE 274 (275)
T ss_dssp STTSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGGBSSCCCTTCTTTTCCHHHHSSC
T ss_pred CCcCCCCCHHHHHHHHHHHhCccccCCCCCEEEECCCcccCCCChhhcCcccchhhhhhhcc
Confidence 56778899999999999999987766677777777776432 2234556677889998754
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-38 Score=313.93 Aligned_cols=247 Identities=22% Similarity=0.353 Sum_probs=206.4
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChh
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPA 256 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~ 256 (512)
+|++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+ .+.++.++.+|++|++
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-----------------~~~~~~~~~~D~~~~~ 64 (256)
T 1geg_A 2 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQ-----------------AGGHAVAVKVDVSDRD 64 (256)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-----------------TTCCEEEEECCTTSHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-----------------cCCcEEEEEecCCCHH
Confidence 58999999999999999999999999999999999888877777654 3457889999999999
Q ss_pred hHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCC
Q 010380 257 DVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSG 336 (512)
Q Consensus 257 sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~ 336 (512)
+++++++++.+++|++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|.|++++..|+||++||. ++
T Consensus 65 ~v~~~~~~~~~~~g~id~lv~nAg~~~-~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~-~~ 142 (256)
T 1geg_A 65 QVFAAVEQARKTLGGFDVIVNNAGVAP-STPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQ-AG 142 (256)
T ss_dssp HHHHHHHHHHHHTTCCCEEEECCCCCC-CBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCG-GG
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCCCC-CCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCEEEEECch-hh
Confidence 999999999999999999999999876 5788899999999999999999999999999999876326899999997 56
Q ss_pred CCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcC-CH---HHH-HHHhc
Q 010380 337 GSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICE-LP---ETV-ARTLV 411 (512)
Q Consensus 337 ~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~-~p---e~v-A~~~l 411 (512)
..+.++...|++||+|+++|+++++.|++++||+||+|+||+|+|+|..... ......... .+ +.. ...++
T Consensus 143 ~~~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~p~ 218 (256)
T 1geg_A 143 HVGNPELAVYSSSKFAVRGLTQTAARDLAPLGITVNGYCPGIVKTPMWAEID----RQVSEAAGKPLGYGTAEFAKRITL 218 (256)
T ss_dssp TSCCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHHHHHHH----HHHHHHHTCCTTHHHHHHHTTCTT
T ss_pred cCCCCCchhHHHHHHHHHHHHHHHHHHHHHcCeEEEEEEECCCccchhhhhh----hhccccccCChHHHHHHHHhcCCC
Confidence 7788889999999999999999999999999999999999999999853210 000000000 01 111 12356
Q ss_pred cccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 412 PRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 412 ~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
+++..|+|+++++.||+++...+.++..+..+|++
T Consensus 219 ~r~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdGG~ 253 (256)
T 1geg_A 219 GRLSEPEDVAACVSYLASPDSDYMTGQSLLIDGGM 253 (256)
T ss_dssp CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESSSS
T ss_pred CCCcCHHHHHHHHHHHhCccccCCCCCEEEeCCCc
Confidence 78899999999999999987766666666666654
|
| >3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-39 Score=320.34 Aligned_cols=248 Identities=21% Similarity=0.293 Sum_probs=205.7
Q ss_pred cccCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEE
Q 010380 170 EEHCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIA 249 (512)
Q Consensus 170 ~~~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~ 249 (512)
....++++|++|||||++|||+++|++|+++|++|++++|+.+.. ...+..+.
T Consensus 7 ~~~~~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~---------------------------~~~~~~~~ 59 (269)
T 3vtz_A 7 HHMEEFTDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKSD---------------------------VNVSDHFK 59 (269)
T ss_dssp ---CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCC--C---------------------------TTSSEEEE
T ss_pred ccccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhc---------------------------cCceeEEE
Confidence 345678999999999999999999999999999999999987542 12456789
Q ss_pred ccCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEe
Q 010380 250 CDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFN 329 (512)
Q Consensus 250 ~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~ 329 (512)
+|++|+++++++++++.+++|++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|+|+++ +.|+||+
T Consensus 60 ~Dv~~~~~v~~~~~~~~~~~g~iD~lv~nAg~~~-~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~ 137 (269)
T 3vtz_A 60 IDVTNEEEVKEAVEKTTKKYGRIDILVNNAGIEQ-YSPLHLTPTEIWRRIIDVNVNGSYLMAKYTIPVMLAI-GHGSIIN 137 (269)
T ss_dssp CCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCC-CCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEE
T ss_pred ecCCCHHHHHHHHHHHHHHcCCCCEEEECCCcCC-CCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCCEEEE
Confidence 9999999999999999999999999999999977 6788999999999999999999999999999999876 5789999
Q ss_pred ecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhh-hcCCHHHHHH
Q 010380 330 MDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNI-ICELPETVAR 408 (512)
Q Consensus 330 vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~-~~~~pe~vA~ 408 (512)
+||. ++..+.++...|++||+|+++|+++++.|+++ ||+||+|+||+|+|+|............... ..........
T Consensus 138 isS~-~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~-~i~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (269)
T 3vtz_A 138 IASV-QSYAATKNAAAYVTSKHALLGLTRSVAIDYAP-KIRCNAVCPGTIMTPMVIKAAKMEVGEDENAVERKIEEWGRQ 215 (269)
T ss_dssp ECCG-GGTSBCTTCHHHHHHHHHHHHHHHHHHHHHTT-TEEEEEEEECSBCCHHHHHHHHHHHCCSTTHHHHHHHHHHHH
T ss_pred ECch-hhccCCCCChhHHHHHHHHHHHHHHHHHHhcC-CCEEEEEEECCCcCcchhhhhhccccccchhhHHHHHHHHhc
Confidence 9998 67888899999999999999999999999998 8999999999999998632111000000000 0001222345
Q ss_pred HhccccccchhhhhhhhhcCChHHHHHHHHHHhccCcccc
Q 010380 409 TLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWFD 448 (512)
Q Consensus 409 ~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~~ 448 (512)
.+++++..|+|+++++.||+++...+.++..+..||++..
T Consensus 216 ~p~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG~~~ 255 (269)
T 3vtz_A 216 HPMGRIGRPEEVAEVVAFLASDRSSFITGACLTVDGGLLS 255 (269)
T ss_dssp STTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGG
T ss_pred CCCCCCcCHHHHHHHHHHHhCCccCCCcCcEEEECCCccc
Confidence 6788999999999999999999888888888888887743
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-38 Score=313.15 Aligned_cols=244 Identities=23% Similarity=0.328 Sum_probs=179.7
Q ss_pred cCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEcc
Q 010380 172 HCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACD 251 (512)
Q Consensus 172 ~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~D 251 (512)
.+++++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+ .+.++.++.||
T Consensus 4 ~~~~~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-----------------~~~~~~~~~~D 66 (253)
T 3qiv_A 4 SMRFENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVA-----------------DGGTAISVAVD 66 (253)
T ss_dssp -CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-----------------TTCEEEEEECC
T ss_pred ccccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHh-----------------cCCcEEEEEcc
Confidence 4678999999999999999999999999999999999999999888888765 45689999999
Q ss_pred CCChhhHHHHHHHHHHHcCCCcccccccccCC--CCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEe
Q 010380 252 VCEPADVQKLSNFAVNEFGSIDIWINNAGTNK--GFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFN 329 (512)
Q Consensus 252 ltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~--~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~ 329 (512)
++|+++++++++++.+.++++|+||||||+.. ...++.+.+.++|++++++|+.|+++++++++|.|+++ +.|+||+
T Consensus 67 ~~~~~~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv~ 145 (253)
T 3qiv_A 67 VSDPESAKAMADRTLAEFGGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALWCTRAVYKKMTKR-GGGAIVN 145 (253)
T ss_dssp TTSHHHHHHHHHHHHHHHSCCCEEEECCCCCCGGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCEEEEE
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCCcCCCCCCcccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhc-CCCEEEE
Confidence 99999999999999999999999999999842 14567889999999999999999999999999999887 5789999
Q ss_pred ecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHH
Q 010380 330 MDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVART 409 (512)
Q Consensus 330 vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~ 409 (512)
+||. ++. ++...|++||+|+++|+++++.|++++||+||+|+||+|+|++....... .. ........
T Consensus 146 isS~-~~~---~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~---~~------~~~~~~~~ 212 (253)
T 3qiv_A 146 QSST-AAW---LYSNYYGLAKVGINGLTQQLSRELGGRNIRINAIAPGPIDTEANRTTTPK---EM------VDDIVKGL 212 (253)
T ss_dssp ECC---------------CCHHHHHHHHHHHHHHTTTTTEEEEEEEC---------------------------------
T ss_pred ECCc-ccc---CCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEecCCcccchhhcCcH---HH------HHHHhccC
Confidence 9987 333 56678999999999999999999999999999999999999986432211 00 11122345
Q ss_pred hccccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 410 LVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 410 ~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
+++++..|+|+++++.||+++...+.++..+..+|++
T Consensus 213 ~~~~~~~~~dva~~~~~l~s~~~~~~tG~~~~vdgG~ 249 (253)
T 3qiv_A 213 PLSRMGTPDDLVGMCLFLLSDEASWITGQIFNVDGGQ 249 (253)
T ss_dssp -------CCHHHHHHHHHHSGGGTTCCSCEEEC----
T ss_pred CCCCCCCHHHHHHHHHHHcCccccCCCCCEEEECCCe
Confidence 6678889999999999999987655555555555543
|
| >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-38 Score=314.52 Aligned_cols=254 Identities=19% Similarity=0.202 Sum_probs=205.8
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
+++++|++|||||++|||+++|++|+++|++|++++|++++++++.+++.+.. .+.++.++.+|+
T Consensus 3 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~---------------~~~~~~~~~~D~ 67 (260)
T 2z1n_A 3 LGIQGKLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIASLV---------------SGAQVDIVAGDI 67 (260)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHS---------------TTCCEEEEECCT
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---------------CCCeEEEEEccC
Confidence 45789999999999999999999999999999999999988887777765310 123688899999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|+++++++++++.+++| +|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|.|+++ +.|+||++||
T Consensus 68 ~~~~~v~~~~~~~~~~~g-id~lv~~Ag~~~-~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv~isS 144 (260)
T 2z1n_A 68 REPGDIDRLFEKARDLGG-ADILVYSTGGPR-PGRFMELGVEDWDESYRLLARSAVWVGRRAAEQMVEK-GWGRMVYIGS 144 (260)
T ss_dssp TCHHHHHHHHHHHHHTTC-CSEEEECCCCCC-CBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHH-TCEEEEEECC
T ss_pred CCHHHHHHHHHHHHHhcC-CCEEEECCCCCC-CCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEECc
Confidence 999999999999999999 999999999876 5778899999999999999999999999999999876 5689999999
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcC--CHHHHHHHh
Q 010380 333 AGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICE--LPETVARTL 410 (512)
Q Consensus 333 ~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~--~pe~vA~~~ 410 (512)
. .+..+.++...|++||+|++.|+++++.|++++||+||+|+||+|+|++........... ...... ........+
T Consensus 145 ~-~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p 222 (260)
T 2z1n_A 145 V-TLLRPWQDLALSNIMRLPVIGVVRTLALELAPHGVTVNAVLPSLILTDRVRSLAEERARR-SGITVEEALKSMASRIP 222 (260)
T ss_dssp G-GGTSCCTTBHHHHHHTHHHHHHHHHHHHHHGGGTEEEEEEEECHHHHCCCC------------------------CCT
T ss_pred h-hhcCCCCCCchhHHHHHHHHHHHHHHHHHHhhhCeEEEEEEECCcccchhhhhhhhhhcc-cCCcHHHHHHHHHhcCC
Confidence 8 677788889999999999999999999999999999999999999999865211000000 000000 011112245
Q ss_pred ccccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 411 VPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 411 l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
++++..|+|+++++.||+++...+.++..+..+|++
T Consensus 223 ~~r~~~~~dva~~v~~l~s~~~~~~tG~~i~vdGG~ 258 (260)
T 2z1n_A 223 MGRVGKPEELASVVAFLASEKASFITGAVIPVDGGA 258 (260)
T ss_dssp TSSCCCHHHHHHHHHHHTSGGGTTCCSCEEEESTTT
T ss_pred CCCccCHHHHHHHHHHHhCccccCCCCCEEEeCCCc
Confidence 678889999999999999987666566666666554
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-38 Score=306.54 Aligned_cols=212 Identities=22% Similarity=0.323 Sum_probs=178.8
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCC
Q 010380 175 AGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCE 254 (512)
Q Consensus 175 l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd 254 (512)
+++|++|||||++|||+++|++|+++|++|++++|+.+++++..+++. .++.++.+|++|
T Consensus 1 Ms~k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~--------------------~~~~~~~~D~~~ 60 (235)
T 3l6e_A 1 MSLGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLLG--------------------NAVIGIVADLAH 60 (235)
T ss_dssp --CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG--------------------GGEEEEECCTTS
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc--------------------CCceEEECCCCC
Confidence 357999999999999999999999999999999999988877666541 258889999999
Q ss_pred hhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCC
Q 010380 255 PADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAG 334 (512)
Q Consensus 255 ~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~ 334 (512)
+++++++++++.+++|++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|.|+++ +++||++||.
T Consensus 61 ~~~v~~~~~~~~~~~g~id~lvnnAg~~~-~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~--~~~iv~isS~- 136 (235)
T 3l6e_A 61 HEDVDVAFAAAVEWGGLPELVLHCAGTGE-FGPVGVYTAEQIRRVMESNLVSTILVAQQTVRLIGER--GGVLANVLSS- 136 (235)
T ss_dssp HHHHHHHHHHHHHHHCSCSEEEEECCCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--CEEEEEECCE-
T ss_pred HHHHHHHHHHHHHhcCCCcEEEECCCCCC-CCChHhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCEEEEEeCH-
Confidence 99999999999999999999999999976 6788899999999999999999999999999999876 3599999998
Q ss_pred CCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhcccc
Q 010380 335 SGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPRI 414 (512)
Q Consensus 335 a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~r~ 414 (512)
++..+.++...|++||+|+++|+++|+.|++++||+||+|+||+|+|+|...... ...+++
T Consensus 137 ~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~-------------------~~~~~~ 197 (235)
T 3l6e_A 137 AAQVGKANESLYCASKWGMRGFLESLRAELKDSPLRLVNLYPSGIRSEFWDNTDH-------------------VDPSGF 197 (235)
T ss_dssp ECCSSCSSHHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEEEEEECCCC------------------------------C
T ss_pred HhcCCCCCCcHHHHHHHHHHHHHHHHHHHhhccCCEEEEEeCCCccCcchhccCC-------------------CCCcCC
Confidence 6788889999999999999999999999999999999999999999998643211 012356
Q ss_pred ccchhhhhhhhhcCC
Q 010380 415 RVVKGSGKAINYLTP 429 (512)
Q Consensus 415 ~~~~~va~~v~~L~s 429 (512)
..|+|+++.+.|+++
T Consensus 198 ~~pedvA~~v~~l~~ 212 (235)
T 3l6e_A 198 MTPEDAAAYMLDALE 212 (235)
T ss_dssp BCHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHh
Confidence 778888888888886
|
| >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-38 Score=318.80 Aligned_cols=246 Identities=21% Similarity=0.266 Sum_probs=206.3
Q ss_pred ccCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEc
Q 010380 171 EHCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIAC 250 (512)
Q Consensus 171 ~~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~ 250 (512)
..+++++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+ .+ ++.++.+
T Consensus 23 ~~~~l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~-----------------~~-~~~~~~~ 84 (276)
T 2b4q_A 23 PYFSLAGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTATRLSA-----------------YG-DCQAIPA 84 (276)
T ss_dssp TTTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHTT-----------------SS-CEEECCC
T ss_pred cccCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-----------------cC-ceEEEEe
Confidence 34678999999999999999999999999999999999999887776666532 23 6888999
Q ss_pred cCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCC---CCeE
Q 010380 251 DVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPK---GGHI 327 (512)
Q Consensus 251 Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~---~g~I 327 (512)
|++|+++++++++++.+.++++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|.|++++. .|+|
T Consensus 85 Dv~d~~~v~~~~~~~~~~~g~iD~lvnnAg~~~-~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~g~i 163 (276)
T 2b4q_A 85 DLSSEAGARRLAQALGELSARLDILVNNAGTSW-GAALESYPVSGWEKVMQLNVTSVFSCIQQLLPLLRRSASAENPARV 163 (276)
T ss_dssp CTTSHHHHHHHHHHHHHHCSCCSEEEECCCCCC-CCCTTSCCSHHHHHHHHHHTHHHHHHHHHHHHHHHHHCCSSSCEEE
T ss_pred eCCCHHHHHHHHHHHHHhcCCCCEEEECCCCCC-CCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccCCCCCCEE
Confidence 999999999999999999999999999999876 577889999999999999999999999999999987632 2899
Q ss_pred EeecCCCCCCCCCCCcc-hhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHH
Q 010380 328 FNMDGAGSGGSSTPLTA-VYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETV 406 (512)
Q Consensus 328 V~vSS~~a~~~~~p~~~-~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~v 406 (512)
|++||. ++..+.++.. .|++||+|++.|+++++.|++++||+||+|+||+|+|+|...... ... ....
T Consensus 164 V~isS~-~~~~~~~~~~~~Y~asK~a~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~----~~~------~~~~ 232 (276)
T 2b4q_A 164 INIGSV-AGISAMGEQAYAYGPSKAALHQLSRMLAKELVGEHINVNVIAPGRFPSRMTRHIAN----DPQ------ALEA 232 (276)
T ss_dssp EEECCG-GGTCCCCCSCTTHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSTTTHHHHH----CHH------HHHH
T ss_pred EEECCH-HHcCCCCCCccccHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccCcCcchhhcch----hHH------HHHH
Confidence 999998 5667777888 999999999999999999999999999999999999998532100 000 1111
Q ss_pred H--HHhccccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 407 A--RTLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 407 A--~~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
. ..+++++..|+|+++++.||+++...+.++..+..+|++
T Consensus 233 ~~~~~p~~r~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdGG~ 274 (276)
T 2b4q_A 233 DSASIPMGRWGRPEEMAALAISLAGTAGAYMTGNVIPIDGGF 274 (276)
T ss_dssp HHHTSTTSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred hhcCCCCCCcCCHHHHHHHHHHHhCccccCCCCCEEEeCCCc
Confidence 1 346678899999999999999987655556566555554
|
| >2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-38 Score=317.40 Aligned_cols=261 Identities=16% Similarity=0.185 Sum_probs=205.8
Q ss_pred CCCCEEEEECCC--ChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 175 AGPRNVVITGST--RGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 175 l~gk~vLVTGas--sGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
+++|++|||||+ +|||+++|++|+++|++|++++|+.+ .++..+++.+. . ..+.++.+|+
T Consensus 19 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~-~~~~~~~l~~~----------------~-~~~~~~~~Dl 80 (285)
T 2p91_A 19 LEGKRALITGVANERSIAYGIAKSFHREGAQLAFTYATPK-LEKRVREIAKG----------------F-GSDLVVKCDV 80 (285)
T ss_dssp TTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEESSGG-GHHHHHHHHHH----------------T-TCCCEEECCT
T ss_pred cCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCHH-HHHHHHHHHHh----------------c-CCeEEEEcCC
Confidence 789999999999 99999999999999999999999975 44455555442 1 2367799999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCC---CCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEe
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKG---FKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFN 329 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~---~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~ 329 (512)
+|+++++++++++.+++|++|+||||||+... ..++.+.+.++|++++++|+.|+++++++++|.|+++ +|+||+
T Consensus 81 ~~~~~v~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~--~g~iv~ 158 (285)
T 2p91_A 81 SLDEDIKNLKKFLEENWGSLDIIVHSIAYAPKEEFKGGVIDTSREGFKIAMDISVYSLIALTRELLPLMEGR--NGAIVT 158 (285)
T ss_dssp TCHHHHHHHHHHHHHHTSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGGTTS--CCEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc--CCEEEE
Confidence 99999999999999999999999999998652 1567789999999999999999999999999999754 589999
Q ss_pred ecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHH
Q 010380 330 MDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVART 409 (512)
Q Consensus 330 vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~ 409 (512)
+||. ++..+.++...|++||+|+++|+++++.|++++||+||+|+||+|+|++....... .... .......
T Consensus 159 isS~-~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~--~~~~------~~~~~~~ 229 (285)
T 2p91_A 159 LSYY-GAEKVVPHYNVMGIAKAALESTVRYLAYDIAKHGHRINAISAGPVKTLAAYSITGF--HLLM------EHTTKVN 229 (285)
T ss_dssp EECG-GGTSBCTTTTHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCSCC--CTTH--HHHH------HHHHHHS
T ss_pred Eccc-hhccCCCCccHHHHHHHHHHHHHHHHHHHhcccCcEEEEEEeCcccCchhhcccch--HHHH------HHHHhcC
Confidence 9997 56777888999999999999999999999999999999999999999986432110 0110 1112335
Q ss_pred hccccccchhhhhhhhhcCChHHHHHHHHHHhccCcccccchhhhhHHHHHHHHH
Q 010380 410 LVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWFDDQGRALYAAEADRIRN 464 (512)
Q Consensus 410 ~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~rl~~ 464 (512)
+++++..|+++++++.||+++...+.++..+..+|++........+....++||+
T Consensus 230 p~~~~~~~~dva~~~~~l~s~~~~~~tG~~~~vdgg~~~~~~~~~~~~~~~~lw~ 284 (285)
T 2p91_A 230 PFGKPITIEDVGDTAVFLCSDWARAITGEVVHVDNGYHIMGVFGREEEIKKEVYG 284 (285)
T ss_dssp TTSSCCCHHHHHHHHHHHTSGGGTTCCSCEEEESTTGGGBSCC------------
T ss_pred CCCCCcCHHHHHHHHHHHcCCcccCCCCCEEEECCCcccccccCChHHHHHHhcC
Confidence 6778899999999999999987766677777788887554444555555666664
|
| >3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-38 Score=310.45 Aligned_cols=244 Identities=16% Similarity=0.171 Sum_probs=199.4
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCC--CEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCC
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSG--DRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCE 254 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~G--a~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd 254 (512)
+|++|||||++|||+++|++|+++| ++|++++|++++++++.+++ +.++.++.+|++|
T Consensus 2 gk~~lVTGas~GIG~aia~~l~~~g~~~~v~~~~r~~~~~~~~~~~~--------------------~~~~~~~~~Dv~~ 61 (254)
T 3kzv_A 2 GKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKY--------------------GDRFFYVVGDITE 61 (254)
T ss_dssp CCEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEESCHHHHHHHHHHH--------------------GGGEEEEESCTTS
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHHh--------------------CCceEEEECCCCC
Confidence 6899999999999999999999985 78999999988877665543 3478899999999
Q ss_pred hhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCC
Q 010380 255 PADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAG 334 (512)
Q Consensus 255 ~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~ 334 (512)
+++++++++++.+++|++|+||||||+..+..++.+.+.++|++++++|+.|+++++++++|+|+++ +|+||++||.
T Consensus 62 ~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~--~g~iv~isS~- 138 (254)
T 3kzv_A 62 DSVLKQLVNAAVKGHGKIDSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLVGIALPELKKT--NGNVVFVSSD- 138 (254)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEEECCCCCCCTTTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEECCS-
T ss_pred HHHHHHHHHHHHHhcCCccEEEECCcccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc--CCeEEEEcCc-
Confidence 9999999999999999999999999996645788999999999999999999999999999999886 3899999998
Q ss_pred CCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhcccc
Q 010380 335 SGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPRI 414 (512)
Q Consensus 335 a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~r~ 414 (512)
++..+.++...|++||+|+++|+++|+.|+ .||+||+|+||+|+|+|.............. ...........+++++
T Consensus 139 ~~~~~~~~~~~Y~asK~a~~~~~~~la~e~--~~i~vn~v~PG~v~t~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~r~ 215 (254)
T 3kzv_A 139 ACNMYFSSWGAYGSSKAALNHFAMTLANEE--RQVKAIAVAPGIVDTDMQVNIRENVGPSSMS-AEQLKMFRGLKENNQL 215 (254)
T ss_dssp CCCCSSCCSHHHHHHHHHHHHHHHHHHHHC--TTSEEEEEECSSCCCCCSCCCCCCCCTTTSC-HHHHHHHHHHHTTC--
T ss_pred hhccCCCCcchHHHHHHHHHHHHHHHHhhc--cCcEEEEEeCCcccchhHHHhhcccCccccC-HHHHHHHHHHHhcCCc
Confidence 677888999999999999999999999998 5899999999999999976532211000000 0000122345678899
Q ss_pred ccchhhhhhhhhcCChHH-HHHHHHHHhccCcc
Q 010380 415 RVVKGSGKAINYLTPPRI-LLALVTAWLRRGRW 446 (512)
Q Consensus 415 ~~~~~va~~v~~L~s~~~-~~~~~~~~~~~g~~ 446 (512)
..|+|++.++.||+++.. .+.++..+..||+.
T Consensus 216 ~~p~dva~~v~~L~s~~~~~~itG~~i~vdg~~ 248 (254)
T 3kzv_A 216 LDSSVPATVYAKLALHGIPDGVNGQYLSYNDPA 248 (254)
T ss_dssp --CHHHHHHHHHHHHHCCCGGGTTCEEETTCGG
T ss_pred CCcccHHHHHHHHHhhcccCCCCccEEEecCcc
Confidence 999999999999999884 66666666665543
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-38 Score=316.54 Aligned_cols=255 Identities=25% Similarity=0.375 Sum_probs=210.5
Q ss_pred ccC-CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEE
Q 010380 171 EHC-KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIA 249 (512)
Q Consensus 171 ~~~-~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~ 249 (512)
..| ++++|++|||||++|||+++|++|+++|++|++++|++++++++.+++.+ .+.++.++.
T Consensus 15 ~~m~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~-----------------~~~~~~~~~ 77 (277)
T 2rhc_B 15 SHMATQDSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELRE-----------------AGVEADGRT 77 (277)
T ss_dssp TTTCCTTSCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-----------------TTCCEEEEE
T ss_pred cccccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-----------------cCCceEEEE
Confidence 344 58899999999999999999999999999999999999888877777754 345788999
Q ss_pred ccCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHH--HHhCCCCCeE
Q 010380 250 CDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRV--MRDQPKGGHI 327 (512)
Q Consensus 250 ~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~--m~~~~~~g~I 327 (512)
||++|+++++++++++.+++|++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|. |+++ +.|+|
T Consensus 78 ~Dv~~~~~v~~~~~~~~~~~g~iD~lv~~Ag~~~-~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~m~~~-~~g~i 155 (277)
T 2rhc_B 78 CDVRSVPEIEALVAAVVERYGPVDVLVNNAGRPG-GGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLER-GTGRI 155 (277)
T ss_dssp CCTTCHHHHHHHHHHHHHHTCSCSEEEECCCCCC-CSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTCHHHH-TEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCCEEEECCCCCC-CCChhhCCHHHHHHHHHHHhHHHHHHHHHHhChhhHhhc-CCeEE
Confidence 9999999999999999999999999999999876 577889999999999999999999999999999 8775 46899
Q ss_pred EeecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhh--hcCCHHH
Q 010380 328 FNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNI--ICELPET 405 (512)
Q Consensus 328 V~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~--~~~~pe~ 405 (512)
|++||. ++..+.++...|++||+|++.|+++++.|+++.||+||+|+||+|+|++........ ...... .......
T Consensus 156 v~isS~-~~~~~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~-~~~~~~~~~~~~~~~ 233 (277)
T 2rhc_B 156 VNIAST-GGKQGVVHAAPYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPMAASVREHY-SDIWEVSTEEAFDRI 233 (277)
T ss_dssp EEECCG-GGTSCCTTCHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEEECSBCSHHHHHHHHHH-HHHHTCCHHHHHHHH
T ss_pred EEECcc-ccccCCCCCccHHHHHHHHHHHHHHHHHHHHHhCcEEEEEecCcCcCchhhhhhhhc-ccccccchHHHHHHH
Confidence 999998 567778889999999999999999999999999999999999999999853210000 000000 0000111
Q ss_pred HHHHhccccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 406 VARTLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 406 vA~~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
....+++++..|+|+++++.||+++...+.++..+..+|++
T Consensus 234 ~~~~p~~r~~~~~dvA~~v~~l~s~~~~~~tG~~~~vdGG~ 274 (277)
T 2rhc_B 234 TARVPIGRYVQPSEVAEMVAYLIGPGAAAVTAQALNVCGGL 274 (277)
T ss_dssp HHHSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTC
T ss_pred HhcCCCCCCcCHHHHHHHHHHHhCchhcCCCCcEEEECCCc
Confidence 23346778899999999999999987666566666666654
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-38 Score=310.66 Aligned_cols=224 Identities=22% Similarity=0.263 Sum_probs=188.6
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
+++++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+..+ ...++.++.||+
T Consensus 3 ~~~~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~Dv 68 (250)
T 3nyw_A 3 LEKQKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNK--------------HVQEPIVLPLDI 68 (250)
T ss_dssp --CCCCEEEEESTTSHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHCT--------------TSCCCEEEECCT
T ss_pred ccCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcc--------------ccCcceEEeccC
Confidence 357899999999999999999999999999999999999999988888866321 125788999999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|+++++++++++.+++|++|+||||||+.. ..++ +.+.++|++++++|+.|+++++++++|.|+++ +.|+||++||
T Consensus 69 ~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~-~~~~-~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~isS 145 (250)
T 3nyw_A 69 TDCTKADTEIKDIHQKYGAVDILVNAAAMFM-DGSL-SEPVDNFRKIMEINVIAQYGILKTVTEIMKVQ-KNGYIFNVAS 145 (250)
T ss_dssp TCHHHHHHHHHHHHHHHCCEEEEEECCCCCC-CCCC-SCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECC
T ss_pred CCHHHHHHHHHHHHHhcCCCCEEEECCCcCC-CCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEEcc
Confidence 9999999999999999999999999999976 4666 78999999999999999999999999999876 5789999999
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhcc
Q 010380 333 AGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVP 412 (512)
Q Consensus 333 ~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~ 412 (512)
. ++..+.+....|++||+|+++|+++|+.|++++||+||+|+||+|+|+|....... .+..
T Consensus 146 ~-~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~------------------~~~~ 206 (250)
T 3nyw_A 146 R-AAKYGFADGGIYGSTKFALLGLAESLYRELAPLGIRVTTLCPGWVNTDMAKKAGTP------------------FKDE 206 (250)
T ss_dssp --------CCTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCSHHHHHTTCC------------------SCGG
T ss_pred H-HhcCCCCCCcchHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCchhhhcCCC------------------cccc
Confidence 8 56665566899999999999999999999999999999999999999986321110 1234
Q ss_pred ccccchhhhhhhhhcCChHH
Q 010380 413 RIRVVKGSGKAINYLTPPRI 432 (512)
Q Consensus 413 r~~~~~~va~~v~~L~s~~~ 432 (512)
++..|+|+++++.||+++..
T Consensus 207 ~~~~p~dva~~v~~l~s~~~ 226 (250)
T 3nyw_A 207 EMIQPDDLLNTIRCLLNLSE 226 (250)
T ss_dssp GSBCHHHHHHHHHHHHTSCT
T ss_pred cCCCHHHHHHHHHHHHcCCC
Confidence 56788888889999888543
|
| >3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-38 Score=316.64 Aligned_cols=245 Identities=20% Similarity=0.300 Sum_probs=204.7
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEE-cChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEcc
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVAS-RSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACD 251 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~-R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~D 251 (512)
.++.+|++|||||++|||+++|++|+++|++|++++ |+.+.+++..+++.. .+.++.++.||
T Consensus 21 ~~~~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~D 83 (269)
T 3gk3_A 21 SMQAKRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSERNDHVSTWLMHERD-----------------AGRDFKAYAVD 83 (269)
T ss_dssp ---CCCEEEETTTTSHHHHHHHHHHHTTTCEEEEEECSCHHHHHHHHHHHHT-----------------TTCCCEEEECC
T ss_pred hhhcCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHh-----------------cCCceEEEEec
Confidence 347899999999999999999999999999999998 555555555554432 35678999999
Q ss_pred CCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeec
Q 010380 252 VCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD 331 (512)
Q Consensus 252 ltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vS 331 (512)
++|+++++++++++.+++|++|+||||||+.. ..++.+.+.++|++++++|+.+++++++.++|.|+++ +.|+||++|
T Consensus 84 l~~~~~v~~~~~~~~~~~g~id~li~nAg~~~-~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~g~iv~is 161 (269)
T 3gk3_A 84 VADFESCERCAEKVLADFGKVDVLINNAGITR-DATFMKMTKGDWDAVMRTDLDAMFNVTKQFIAGMVER-RFGRIVNIG 161 (269)
T ss_dssp TTCHHHHHHHHHHHHHHHSCCSEEEECCCCCC-CBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCCcCC-CcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCEEEEeC
Confidence 99999999999999999999999999999987 6788899999999999999999999999999999876 568999999
Q ss_pred CCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhc
Q 010380 332 GAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLV 411 (512)
Q Consensus 332 S~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l 411 (512)
|. ++..+.++...|++||+|+++|+++|+.|++++||+||+|+||+|+|+|.......... .......++
T Consensus 162 S~-~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~---------~~~~~~~~~ 231 (269)
T 3gk3_A 162 SV-NGSRGAFGQANYASAKAGIHGFTKTLALETAKRGITVNTVSPGYLATAMVEAVPQDVLE---------AKILPQIPV 231 (269)
T ss_dssp CH-HHHHCCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTTC----------------CCSGGGCTT
T ss_pred Ch-hhccCCCCcchHHHHHHHHHHHHHHHHHHhhhcCCEEEEEecCcccchhhhhhchhHHH---------HHhhhcCCc
Confidence 97 66778889999999999999999999999999999999999999999997543221110 001123456
Q ss_pred cccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 412 PRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 412 ~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
+++..|+|+++++.||+++...+.++..+..||++
T Consensus 232 ~~~~~p~dvA~~v~~L~s~~~~~itG~~i~vdgG~ 266 (269)
T 3gk3_A 232 GRLGRPDEVAALIAFLCSDDAGFVTGADLAINGGM 266 (269)
T ss_dssp SSCBCHHHHHHHHHHHTSTTCTTCCSCEEEESTTS
T ss_pred CCccCHHHHHHHHHHHhCCCcCCeeCcEEEECCCE
Confidence 78889999999999999988766667777666665
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-38 Score=319.39 Aligned_cols=249 Identities=21% Similarity=0.272 Sum_probs=207.6
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCc---eEEEEE
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHA---KVAGIA 249 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~---~v~~v~ 249 (512)
+++++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+ .+. ++.++.
T Consensus 22 ~~l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~-----------------~~~~~~~~~~~~ 84 (297)
T 1xhl_A 22 ARFSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILK-----------------AGVPAEKINAVV 84 (297)
T ss_dssp -CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-----------------TTCCGGGEEEEE
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-----------------cCCCCceEEEEe
Confidence 357899999999999999999999999999999999999988887777754 223 688999
Q ss_pred ccCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCC--CcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeE
Q 010380 250 CDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKP--LLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHI 327 (512)
Q Consensus 250 ~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~--~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~I 327 (512)
+|++|+++++++++++.+++|++|+||||||+.. ..+ +.+.+.++|++++++|+.|+++++++++|.|+++ + |+|
T Consensus 85 ~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnAG~~~-~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~-g~I 161 (297)
T 1xhl_A 85 ADVTEASGQDDIINTTLAKFGKIDILVNNAGANL-ADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKT-K-GEI 161 (297)
T ss_dssp CCTTSHHHHHHHHHHHHHHHSCCCEEEECCCCCC-CCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-T-CEE
T ss_pred cCCCCHHHHHHHHHHHHHhcCCCCEEEECCCcCc-CCCCccccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhc-C-CEE
Confidence 9999999999999999999999999999999876 455 8899999999999999999999999999999876 3 899
Q ss_pred EeecCCCCCCCCC-CCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHH
Q 010380 328 FNMDGAGSGGSST-PLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETV 406 (512)
Q Consensus 328 V~vSS~~a~~~~~-p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~v 406 (512)
|++||. ++..+. ++...|++||+|+++|+++++.|++++||+||+|+||+|+|++............ . .++..
T Consensus 162 V~isS~-~~~~~~~~~~~~Y~asKaa~~~l~~~la~el~~~gI~v~~v~PG~v~T~~~~~~~~~~~~~~-~----~~~~~ 235 (297)
T 1xhl_A 162 VNVSSI-VAGPQAHSGYPYYACAKAALDQYTRCTAIDLIQHGVRVNSVSPGAVATGFMGAMGLPETASD-K----LYSFI 235 (297)
T ss_dssp EEECCG-GGSSSCCTTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSSHHHHTTCCHHHHH-H----HHHHH
T ss_pred EEEcCc-hhccCCCCCcchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCcCcccccccccccccc-c----hHHHH
Confidence 999998 556666 8889999999999999999999999999999999999999998643210000000 0 00111
Q ss_pred ----HHHhccccccchhhhhhhhhcCChH-HHHHHHHHHhccCccc
Q 010380 407 ----ARTLVPRIRVVKGSGKAINYLTPPR-ILLALVTAWLRRGRWF 447 (512)
Q Consensus 407 ----A~~~l~r~~~~~~va~~v~~L~s~~-~~~~~~~~~~~~g~~~ 447 (512)
...+++++..|+|+++++.||+++. ..+.++..+..+|++.
T Consensus 236 ~~~~~~~p~~r~~~pedvA~~v~~l~s~~~~~~itG~~i~vdGG~~ 281 (297)
T 1xhl_A 236 GSRKECIPVGHCGKPEEIANIIVFLADRNLSSYIIGQSIVADGGST 281 (297)
T ss_dssp HHCTTTCTTSSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTTGG
T ss_pred HHHHhcCCCCCCcCHHHHHHHHHHHhCCcccCCccCcEEEECCCcc
Confidence 1235678899999999999999987 6666677777777663
|
| >3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-38 Score=312.87 Aligned_cols=246 Identities=23% Similarity=0.267 Sum_probs=209.5
Q ss_pred cCCCCCCEEEEECCC--ChHHHHHHHHHHHCCCEEEEEEcChhhH-HHHHHHHHHHHhhhhhhcCCCCcccccCceEEEE
Q 010380 172 HCKAGPRNVVITGST--RGLGKALAREFLLSGDRVVVASRSSESV-RMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGI 248 (512)
Q Consensus 172 ~~~l~gk~vLVTGas--sGIG~aiA~~La~~Ga~Vvl~~R~~~~l-~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v 248 (512)
.+++++|++|||||+ +|||+++|++|+++|++|++++|+.++. ++..+++.+. .+.++.++
T Consensus 15 ~~~l~~k~vlITGas~~~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~----------------~~~~~~~~ 78 (267)
T 3gdg_A 15 QLSLKGKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRAQGAEENVKELEKT----------------YGIKAKAY 78 (267)
T ss_dssp HHCCTTCEEEETTCCSSSSHHHHHHHHHHHTSCEEEECBSSSSSHHHHHHHHHHHH----------------HCCCEECC
T ss_pred ccCcCCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEEeCCcchhHHHHHHHHHHh----------------cCCceeEE
Confidence 457899999999999 9999999999999999999999986655 6666666543 24678999
Q ss_pred EccCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEE
Q 010380 249 ACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIF 328 (512)
Q Consensus 249 ~~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV 328 (512)
.||++|+++++++++++.+++++||+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|.|+++ +.|+||
T Consensus 79 ~~Dl~~~~~v~~~~~~~~~~~g~id~li~nAg~~~-~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~g~iv 156 (267)
T 3gdg_A 79 KCQVDSYESCEKLVKDVVADFGQIDAFIANAGATA-DSGILDGSVEAWNHVVQVDLNGTFHCAKAVGHHFKER-GTGSLV 156 (267)
T ss_dssp BCCTTCHHHHHHHHHHHHHHTSCCSEEEECCCCCC-CSCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEE
T ss_pred ecCCCCHHHHHHHHHHHHHHcCCCCEEEECCCcCC-CCCcccCCHHHHHHHHHhcchHHHHHHHHHHHHHHHc-CCceEE
Confidence 99999999999999999999999999999999987 5778899999999999999999999999999999886 578999
Q ss_pred eecCCCCCCCCC--CCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHH
Q 010380 329 NMDGAGSGGSST--PLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETV 406 (512)
Q Consensus 329 ~vSS~~a~~~~~--p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~v 406 (512)
++||. ++..+. ++...|++||+|+++|+++++.|+++. |+||+|+||+|+|+|......... ....
T Consensus 157 ~isS~-~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~-i~v~~v~PG~v~t~~~~~~~~~~~----------~~~~ 224 (267)
T 3gdg_A 157 ITASM-SGHIANFPQEQTSYNVAKAGCIHMARSLANEWRDF-ARVNSISPGYIDTGLSDFVPKETQ----------QLWH 224 (267)
T ss_dssp EECCG-GGTSCCSSSCCHHHHHHHHHHHHHHHHHHHHTTTT-CEEEEEEECCEECSCGGGSCHHHH----------HHHH
T ss_pred EEccc-cccccCCCCCCCcchHHHHHHHHHHHHHHHHhccC-cEEEEEECCccccchhhhCCHHHH----------HHHH
Confidence 99997 444443 578899999999999999999999887 999999999999999753321111 1112
Q ss_pred HHHhccccccchhhhhhhhhcCChHHHHHHHHHHhccCccc
Q 010380 407 ARTLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWF 447 (512)
Q Consensus 407 A~~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~ 447 (512)
...+++++..|+|+++++.||+++...+.++..+..||+|.
T Consensus 225 ~~~~~~r~~~~~dva~~~~~l~s~~~~~itG~~i~vdgG~~ 265 (267)
T 3gdg_A 225 SMIPMGRDGLAKELKGAYVYFASDASTYTTGADLLIDGGYT 265 (267)
T ss_dssp TTSTTSSCEETHHHHHHHHHHHSTTCTTCCSCEEEESTTGG
T ss_pred hcCCCCCCcCHHHHHhHhheeecCccccccCCEEEECCcee
Confidence 23567889999999999999999887777777777777763
|
| >3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-38 Score=311.06 Aligned_cols=246 Identities=23% Similarity=0.291 Sum_probs=200.9
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
++.+|++|||||++|||+++|++|+++|++|++++|+.+...+...+..+. .+.++.++.||++
T Consensus 4 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~Dl~ 67 (264)
T 3i4f_A 4 GRFVRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTAMETMKETYKD----------------VEERLQFVQADVT 67 (264)
T ss_dssp --CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTGG----------------GGGGEEEEECCTT
T ss_pred ccccCEEEEeCCCchhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHh----------------cCCceEEEEecCC
Confidence 456799999999999999999999999999999988765543333332211 3467999999999
Q ss_pred ChhhHHHHHHHHHHHcCCCccccccccc--CCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeec
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGT--NKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD 331 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~--~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vS 331 (512)
|+++++++++++.++++++|+||||||+ .. ..++.+.+.++|++++++|+.|+++++++++|.|+++ +.++||++|
T Consensus 68 ~~~~v~~~~~~~~~~~g~id~lv~~Ag~~~~~-~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~g~iv~is 145 (264)
T 3i4f_A 68 KKEDLHKIVEEAMSHFGKIDFLINNAGPYVFE-RKKLVDYEEDEWNEMIQGNLTAVFHLLKLVVPVMRKQ-NFGRIINYG 145 (264)
T ss_dssp SHHHHHHHHHHHHHHHSCCCEEECCCCCCCCS-CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEEC
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCcccccC-CCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhc-CCCeEEEEe
Confidence 9999999999999999999999999994 33 4678899999999999999999999999999999887 578999999
Q ss_pred CCCCC-CCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHh
Q 010380 332 GAGSG-GSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTL 410 (512)
Q Consensus 332 S~~a~-~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~ 410 (512)
|.... ..+.++...|++||+|+++|+++|+.|++++||+||+|+||+|.|++........ .. ......+
T Consensus 146 s~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~----~~------~~~~~~p 215 (264)
T 3i4f_A 146 FQGADSAPGWIYRSAFAAAKVGLVSLTKTVAYEEAEYGITANMVCPGDIIGEMKEATIQEA----RQ------LKEHNTP 215 (264)
T ss_dssp CTTGGGCCCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCGGGGSCCHHHH----HH------C------
T ss_pred echhcccCCCCCCchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEccCCccCccchhccHHH----HH------HHhhcCC
Confidence 87433 6677888999999999999999999999999999999999999999975432211 11 1123456
Q ss_pred ccccccchhhhhhhhhcCChHHHHHHHHHHhccCccc
Q 010380 411 VPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWF 447 (512)
Q Consensus 411 l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~ 447 (512)
++++..|+|+++++.||+++...+.++..+..+|++.
T Consensus 216 ~~r~~~~~dva~~v~~l~s~~~~~itG~~i~vdGG~~ 252 (264)
T 3i4f_A 216 IGRSGTGEDIARTISFLCEDDSDMITGTIIEVTGAVD 252 (264)
T ss_dssp --CCCCHHHHHHHHHHHHSGGGTTCCSCEEEESCSCC
T ss_pred CCCCcCHHHHHHHHHHHcCcccCCCCCcEEEEcCcee
Confidence 7888999999999999999887777777787777763
|
| >3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-39 Score=318.85 Aligned_cols=237 Identities=21% Similarity=0.233 Sum_probs=200.0
Q ss_pred ccCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEc
Q 010380 171 EHCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIAC 250 (512)
Q Consensus 171 ~~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~ 250 (512)
..+++++|++|||||++|||+++|++|+++|++|++++|+.+.++ ....+.+
T Consensus 22 ~m~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~----------------------------~~~~~~~ 73 (266)
T 3uxy_A 22 SMQGFEGKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVAGIA----------------------------ADLHLPG 73 (266)
T ss_dssp ----CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECSSCCTTSC----------------------------CSEECCC
T ss_pred hhhCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH----------------------------hhhccCc
Confidence 345689999999999999999999999999999999999865431 1134589
Q ss_pred cCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEee
Q 010380 251 DVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNM 330 (512)
Q Consensus 251 Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~v 330 (512)
|++|.++++++++++.+++|++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|+|+++ +.|+||++
T Consensus 74 Dv~~~~~~~~~~~~~~~~~g~iD~lvnnAg~~~-~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~iv~i 151 (266)
T 3uxy_A 74 DLREAAYADGLPGAVAAGLGRLDIVVNNAGVIS-RGRITETTDADWSLSLGVNVEAPFRICRAAIPLMAAA-GGGAIVNV 151 (266)
T ss_dssp CTTSHHHHHHHHHHHHHHHSCCCEEEECCCCCC-CBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCEEEECCCCCC-CCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEE
Confidence 999999999999999999999999999999987 6788999999999999999999999999999999986 57899999
Q ss_pred cCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCH-----HH
Q 010380 331 DGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELP-----ET 405 (512)
Q Consensus 331 SS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~p-----e~ 405 (512)
||. ++..+.++...|++||+|+++|+++++.|++++||+||+|+||+|+|+|....... ....+ +.
T Consensus 152 sS~-~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~--------~~~~~~~~~~~~ 222 (266)
T 3uxy_A 152 ASC-WGLRPGPGHALYCLTKAALASLTQCMGMDHAPQGIRINAVCPNEVNTPMLRTGFAK--------RGFDPDRAVAEL 222 (266)
T ss_dssp CCS-BTTBCCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCCHHHHHHHHH--------TTCCHHHHHHHH
T ss_pred CCH-HhCCCCCCChHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeCCCcchHhhhhhhc--------ccccchHHHHHH
Confidence 998 67888899999999999999999999999999999999999999999986321110 00111 12
Q ss_pred HHHHhccccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 406 VARTLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 406 vA~~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
....+++++..|+|+++++.||+++...+.++..+..||++
T Consensus 223 ~~~~p~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG~ 263 (266)
T 3uxy_A 223 GRTVPLGRIAEPEDIADVVLFLASDAARYLCGSLVEVNGGK 263 (266)
T ss_dssp HTTSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTC
T ss_pred HhcCCCCCCcCHHHHHHHHHHHhCchhcCCcCCEEEECcCE
Confidence 22345778899999999999999998777677767666665
|
| >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-38 Score=314.55 Aligned_cols=251 Identities=22% Similarity=0.254 Sum_probs=206.0
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
++++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+... ...++.++.||++
T Consensus 3 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~Dv~ 68 (280)
T 1xkq_A 3 RFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGV--------------SEKQVNSVVADVT 68 (280)
T ss_dssp TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTC--------------CGGGEEEEECCTT
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCC--------------CCcceEEEEecCC
Confidence 47899999999999999999999999999999999999888877776643100 0126889999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCC----CcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEe
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKP----LLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFN 329 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~----~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~ 329 (512)
|+++++++++++.+++|++|+||||||+.. ..+ +.+.+.++|++++++|+.++++++++++|.|+++ + |+||+
T Consensus 69 ~~~~v~~~~~~~~~~~g~iD~lv~nAg~~~-~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~-g~iv~ 145 (280)
T 1xkq_A 69 TEDGQDQIINSTLKQFGKIDVLVNNAGAAI-PDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVAS-K-GEIVN 145 (280)
T ss_dssp SHHHHHHHHHHHHHHHSCCCEEEECCCCCC-CCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-T-CEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEECCCCCC-CCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHhhcC-C-CcEEE
Confidence 999999999999999999999999999876 455 7889999999999999999999999999999876 3 89999
Q ss_pred ecCCCCCCCCC-CCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHH--
Q 010380 330 MDGAGSGGSST-PLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETV-- 406 (512)
Q Consensus 330 vSS~~a~~~~~-p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~v-- 406 (512)
+||. ++..+. ++...|++||+|+++|+++++.|++++||+||+|+||+|+|++............ . .++..
T Consensus 146 isS~-~~~~~~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~-~----~~~~~~~ 219 (280)
T 1xkq_A 146 VSSI-VAGPQAQPDFLYYAIAKAALDQYTRSTAIDLAKFGIRVNSVSPGMVETGFTNAMGMPDQASQ-K----FYNFMAS 219 (280)
T ss_dssp ECCG-GGSSSCCCSSHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCSSHHHHTTCCHHHHH-H----HHHHHHH
T ss_pred ecCc-cccCCCCCcccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeeCcCcCCccccccccccccc-c----hHHHHHH
Confidence 9998 555666 8889999999999999999999999999999999999999998643210000000 0 00111
Q ss_pred --HHHhccccccchhhhhhhhhcCChH-HHHHHHHHHhccCccc
Q 010380 407 --ARTLVPRIRVVKGSGKAINYLTPPR-ILLALVTAWLRRGRWF 447 (512)
Q Consensus 407 --A~~~l~r~~~~~~va~~v~~L~s~~-~~~~~~~~~~~~g~~~ 447 (512)
...+++++..|+|+++++.||+++. ..+.++..+..+|++.
T Consensus 220 ~~~~~p~~~~~~pedvA~~v~~l~s~~~~~~~tG~~i~vdgG~~ 263 (280)
T 1xkq_A 220 HKECIPIGAAGKPEHIANIILFLADRNLSFYILGQSIVADGGTS 263 (280)
T ss_dssp CTTTCTTSSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTTGG
T ss_pred HHcCCCCCCCCCHHHHHHHHHHhcCcccccCccCCeEEECCCcc
Confidence 1235678899999999999999987 6566677777777664
|
| >2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-38 Score=315.02 Aligned_cols=246 Identities=19% Similarity=0.223 Sum_probs=201.8
Q ss_pred ccCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcCh-hhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEE
Q 010380 171 EHCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSS-ESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIA 249 (512)
Q Consensus 171 ~~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~-~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~ 249 (512)
...++++|++|||||++|||+++|++|+++|++|++++|+. ++++++.+++.+. .+.++.++.
T Consensus 17 ~~~~l~~k~~lVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~~l~~~----------------~~~~~~~~~ 80 (288)
T 2x9g_A 17 RGSHMEAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAVSLADELNKE----------------RSNTAVVCQ 80 (288)
T ss_dssp -----CCCEEEETTCSSHHHHHHHHHHHHHTCEEEEEESSCHHHHHHHHHHHHHH----------------STTCEEEEE
T ss_pred CCcCCCCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhh----------------cCCceEEEE
Confidence 34568899999999999999999999999999999999998 8887777776521 346788999
Q ss_pred ccCCC----hhhHHHHHHHHHHHcCCCcccccccccCCCCCCC-----cC-----CCHHHHHHHHHhhhhhHHHHHHHHH
Q 010380 250 CDVCE----PADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPL-----LQ-----FTNEEIEQIVSTNLVGSILCTREAM 315 (512)
Q Consensus 250 ~Dltd----~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~-----~~-----~s~e~~~~~~~vNv~g~~~l~k~~l 315 (512)
+|++| +++++++++++.+.+|++|+||||||+.. ..++ .+ .+.++|++++++|+.++++++++++
T Consensus 81 ~Dv~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAG~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~ 159 (288)
T 2x9g_A 81 ADLTNSNVLPASCEEIINSCFRAFGRCDVLVNNASAFY-PTPLVQGDHEDNSNGKTVETQVAELIGTNAIAPFLLTMSFA 159 (288)
T ss_dssp CCCSCSTTHHHHHHHHHHHHHHHHSCCCEEEECCCCCC-CCCSCCC--------CCHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred eecCCccCCHHHHHHHHHHHHHhcCCCCEEEECCCCCC-CCccccccchhcccccCCHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999 99999999999999999999999999876 4556 66 8889999999999999999999999
Q ss_pred HHHHhCCC-----CCeEEeecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcch
Q 010380 316 RVMRDQPK-----GGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTI 390 (512)
Q Consensus 316 p~m~~~~~-----~g~IV~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~ 390 (512)
|.|++++. .|+||++||. .+..+.++...|++||+|+++|+++|+.|++++||+||+|+||+|+|++ . ...
T Consensus 160 ~~~~~~~~~~~~~~g~iv~isS~-~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~-~-~~~- 235 (288)
T 2x9g_A 160 QRQKGTNPNCTSSNLSIVNLCDA-MVDQPCMAFSLYNMGKHALVGLTQSAALELAPYGIRVNGVAPGVSLLPV-A-MGE- 235 (288)
T ss_dssp HHC--------CCCEEEEEECCT-TTTSCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSCSCCT-T-SCH-
T ss_pred HHHhhcCCCCCCCCeEEEEEecc-cccCCCCCCchHHHHHHHHHHHHHHHHHHhhccCeEEEEEEeccccCcc-c-cCh-
Confidence 99987621 6899999998 6777888999999999999999999999999999999999999999998 3 111
Q ss_pred hhhhhhhhhcCCHHHHHHHhcccc-ccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 391 QNKQMFNIICELPETVARTLVPRI-RVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 391 ~~~~~~~~~~~~pe~vA~~~l~r~-~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
... .......+++++ ..|+++++++.||+++...+.++..+..+|++
T Consensus 236 --~~~-------~~~~~~~p~~r~~~~pedvA~~v~~l~s~~~~~itG~~i~vdGG~ 283 (288)
T 2x9g_A 236 --EEK-------DKWRRKVPLGRREASAEQIADAVIFLVSGSAQYITGSIIKVDGGL 283 (288)
T ss_dssp --HHH-------HHHHHTCTTTSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred --HHH-------HHHHhhCCCCCCCCCHHHHHHHHHHHhCccccCccCCEEEECcch
Confidence 100 111223456778 89999999999999988767677677677665
|
| >4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-38 Score=312.39 Aligned_cols=243 Identities=19% Similarity=0.278 Sum_probs=208.8
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEE-EcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVA-SRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~-~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
++.+|++|||||++|||+++|++|+++|++|+++ .|+.+.+++..+++.+ .+.++.++.+|+
T Consensus 23 ~l~~k~vlVTGas~gIG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~l~~-----------------~~~~~~~~~~Dl 85 (267)
T 4iiu_A 23 NAMSRSVLVTGASKGIGRAIARQLAADGFNIGVHYHRDAAGAQETLNAIVA-----------------NGGNGRLLSFDV 85 (267)
T ss_dssp --CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH-----------------TTCCEEEEECCT
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHh-----------------cCCceEEEEecC
Confidence 4678999999999999999999999999999664 5777777777777765 356789999999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|+++++++++++.++++++|+||||||+.. ..++.+.+.++|++++++|+.|++++++.++|.|.++.+.++||++||
T Consensus 86 ~~~~~~~~~~~~~~~~~g~id~li~nAg~~~-~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS 164 (267)
T 4iiu_A 86 ANREQCREVLEHEIAQHGAWYGVVSNAGIAR-DAAFPALSNDDWDAVIHTNLDSFYNVIQPCIMPMIGARQGGRIITLSS 164 (267)
T ss_dssp TCHHHHHHHHHHHHHHHCCCSEEEECCCCCC-CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECC
T ss_pred CCHHHHHHHHHHHHHHhCCccEEEECCCCCC-CCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcc
Confidence 9999999999999999999999999999987 678889999999999999999999999999999874446899999999
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhcc
Q 010380 333 AGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVP 412 (512)
Q Consensus 333 ~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~ 412 (512)
. ++..+.++...|++||+|+++|+++|+.|++++||+||+|+||+|+|++...... . ..+.....+++
T Consensus 165 ~-~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~----~-------~~~~~~~~p~~ 232 (267)
T 4iiu_A 165 V-SGVMGNRGQVNYSAAKAGIIGATKALAIELAKRKITVNCIAPGLIDTGMIEMEES----A-------LKEAMSMIPMK 232 (267)
T ss_dssp H-HHHHCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTCCCCHH----H-------HHHHHHTCTTC
T ss_pred h-HhccCCCCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEEeeecCCcccccHH----H-------HHHHHhcCCCC
Confidence 7 5677888999999999999999999999999999999999999999999754311 0 11223345678
Q ss_pred ccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 413 RIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 413 r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
++..|+|+++++.||+++...+.++..+..||++
T Consensus 233 ~~~~~edva~~~~~L~s~~~~~itG~~i~vdGG~ 266 (267)
T 4iiu_A 233 RMGQAEEVAGLASYLMSDIAGYVTRQVISINGGM 266 (267)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTC
T ss_pred CCcCHHHHHHHHHHHhCCcccCccCCEEEeCCCc
Confidence 8899999999999999998777777777776665
|
| >3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-37 Score=309.57 Aligned_cols=225 Identities=22% Similarity=0.290 Sum_probs=192.9
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
++.+|++|||||++|||+++|++|+++|++|++++|+.+++++. ...++.++.+|++
T Consensus 13 ~~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~-----------------------~~~~~~~~~~Dv~ 69 (266)
T 3p19_A 13 GSMKKLVVITGASSGIGEAIARRFSEEGHPLLLLARRVERLKAL-----------------------NLPNTLCAQVDVT 69 (266)
T ss_dssp --CCCEEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHTT-----------------------CCTTEEEEECCTT
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHh-----------------------hcCCceEEEecCC
Confidence 46789999999999999999999999999999999997765321 1236788999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
|+++++++++++.+.+|++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|.|+++ +.|+||++||.
T Consensus 70 d~~~v~~~~~~~~~~~g~iD~lvnnAg~~~-~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~-~~g~IV~isS~ 147 (266)
T 3p19_A 70 DKYTFDTAITRAEKIYGPADAIVNNAGMML-LGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKAR-NCGTIINISSI 147 (266)
T ss_dssp CHHHHHHHHHHHHHHHCSEEEEEECCCCCC-CCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEECCG
T ss_pred CHHHHHHHHHHHHHHCCCCCEEEECCCcCC-CCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEEcCh
Confidence 999999999999999999999999999987 6788999999999999999999999999999999876 57899999998
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhccc
Q 010380 334 GSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPR 413 (512)
Q Consensus 334 ~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~r 413 (512)
++..+.++...|++||+|+++|+++|+.|++++||+||+|+||+|+|++............ ......++++
T Consensus 148 -~~~~~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~--------~~~~~~~~~r 218 (266)
T 3p19_A 148 -AGKKTFPDHAAYCGTKFAVHAISENVREEVAASNVRVMTIAPSAVKTELLSHTTSQQIKDG--------YDAWRVDMGG 218 (266)
T ss_dssp -GGTSCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBSSSGGGGCSCHHHHHH--------HHHHHHHTTC
T ss_pred -hhCCCCCCCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCccccchhhcccchhhhHH--------HHhhcccccC
Confidence 6788889999999999999999999999999999999999999999999754322111000 0011346788
Q ss_pred cccchhhhhhhhhcCChHH
Q 010380 414 IRVVKGSGKAINYLTPPRI 432 (512)
Q Consensus 414 ~~~~~~va~~v~~L~s~~~ 432 (512)
+..|+|+++++.||++...
T Consensus 219 ~~~pedvA~av~~l~~~~~ 237 (266)
T 3p19_A 219 VLAADDVARAVLFAYQQPQ 237 (266)
T ss_dssp CBCHHHHHHHHHHHHHSCT
T ss_pred CCCHHHHHHHHHHHHcCCC
Confidence 9999999999999987543
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-38 Score=305.20 Aligned_cols=227 Identities=21% Similarity=0.263 Sum_probs=196.5
Q ss_pred cCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEcc
Q 010380 172 HCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACD 251 (512)
Q Consensus 172 ~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~D 251 (512)
..++++|+++||||++|||+++|++|+++|++|++++|+.++++++.+++.+. ...++.++.+|
T Consensus 9 ~~~l~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~----------------~~~~~~~~~~d 72 (247)
T 3i1j_A 9 PELLKGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSA----------------GQPQPLIIALN 72 (247)
T ss_dssp TTTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT----------------TSCCCEEEECC
T ss_pred CccCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhc----------------CCCCceEEEec
Confidence 35689999999999999999999999999999999999999998888887652 12455666776
Q ss_pred C--CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEe
Q 010380 252 V--CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFN 329 (512)
Q Consensus 252 l--td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~ 329 (512)
+ +|.++++++++++.+.++++|+||||||+..+..++.+.+.++|++++++|+.|+++++++++|+|+++ +.++||+
T Consensus 73 ~d~~~~~~~~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~~~iv~ 151 (247)
T 3i1j_A 73 LENATAQQYRELAARVEHEFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATFMLTRALLPLLKRS-EDASIAF 151 (247)
T ss_dssp TTTCCHHHHHHHHHHHHHHHSCCSEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTS-SSEEEEE
T ss_pred cccCCHHHHHHHHHHHHHhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhC-CCCeEEE
Confidence 6 999999999999999999999999999986546788999999999999999999999999999999876 5789999
Q ss_pred ecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCC-CCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHH
Q 010380 330 MDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKR-SKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVAR 408 (512)
Q Consensus 330 vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~-~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~ 408 (512)
+||. .+..+.++...|++||+|+++|+++|+.|+.+ .||+||+|+||+|+|+|....... ..
T Consensus 152 isS~-~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~i~v~~v~PG~v~t~~~~~~~~~----------~~------ 214 (247)
T 3i1j_A 152 TSSS-VGRKGRANWGAYGVSKFATEGLMQTLADELEGVTAVRANSINPGATRTGMRAQAYPD----------EN------ 214 (247)
T ss_dssp ECCG-GGTSCCTTCHHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEECCCCSSHHHHHHSTT----------SC------
T ss_pred Ecch-hhcCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCcccCccchhcccc----------cC------
Confidence 9998 67788899999999999999999999999987 899999999999999985321110 01
Q ss_pred HhccccccchhhhhhhhhcCChHHHH
Q 010380 409 TLVPRIRVVKGSGKAINYLTPPRILL 434 (512)
Q Consensus 409 ~~l~r~~~~~~va~~v~~L~s~~~~~ 434 (512)
..+...|+|+++.+.||++++..+
T Consensus 215 --~~~~~~p~dva~~~~~l~s~~~~~ 238 (247)
T 3i1j_A 215 --PLNNPAPEDIMPVYLYLMGPDSTG 238 (247)
T ss_dssp --GGGSCCGGGGTHHHHHHHSGGGTT
T ss_pred --ccCCCCHHHHHHHHHHHhCchhcc
Confidence 124567899999999999987643
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-37 Score=305.01 Aligned_cols=223 Identities=25% Similarity=0.346 Sum_probs=190.1
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
.++++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+ .+.++.++.+|+
T Consensus 25 ~~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-----------------~~~~~~~~~~D~ 87 (262)
T 3rkr_A 25 SSLSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVA-----------------AGGEAESHACDL 87 (262)
T ss_dssp CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-----------------TTCEEEEEECCT
T ss_pred hccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHH-----------------hCCceeEEEecC
Confidence 347899999999999999999999999999999999999999888888765 456899999999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|+++++++++++.+.+|++|+||||||+.....++.+.+.++|++++++|+.|+++++++++|.|+++ +.|+||++||
T Consensus 88 ~~~~~v~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~isS 166 (262)
T 3rkr_A 88 SHSDAIAAFATGVLAAHGRCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYLLLRAFAPAMIAA-KRGHIINISS 166 (262)
T ss_dssp TCHHHHHHHHHHHHHHHSCCSEEEECCCCCCCSSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCCEEEEECS
T ss_pred CCHHHHHHHHHHHHHhcCCCCEEEECCCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCceEEEEec
Confidence 999999999999999999999999999985436788999999999999999999999999999999887 5789999999
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhcc
Q 010380 333 AGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVP 412 (512)
Q Consensus 333 ~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~ 412 (512)
. ++..+.++...|++||+|+++|+++++.|+++.||+||+|+||+|+|+|...... .....
T Consensus 167 ~-~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~------------------~~~~~ 227 (262)
T 3rkr_A 167 L-AGKNPVADGAAYTASKWGLNGLMTSAAEELRQHQVRVSLVAPGSVRTEFGVGLSA------------------KKSAL 227 (262)
T ss_dssp S-CSSCCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC---------------------------------
T ss_pred h-hhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCCcCCccccccc------------------ccccc
Confidence 8 6778889999999999999999999999999999999999999999998643211 11233
Q ss_pred ccccchhhhhhhhhcCChHH
Q 010380 413 RIRVVKGSGKAINYLTPPRI 432 (512)
Q Consensus 413 r~~~~~~va~~v~~L~s~~~ 432 (512)
+...|+|+++++.||+++..
T Consensus 228 ~~~~p~dvA~~v~~l~s~~~ 247 (262)
T 3rkr_A 228 GAIEPDDIADVVALLATQAD 247 (262)
T ss_dssp -CCCHHHHHHHHHHHHTCCT
T ss_pred cCCCHHHHHHHHHHHhcCcc
Confidence 45678888888889887653
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-38 Score=310.94 Aligned_cols=240 Identities=28% Similarity=0.357 Sum_probs=203.1
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
++++|++|||||++|||+++|++|+++|++|++++|++++++++.+++ +.++.++.+|++
T Consensus 2 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~--------------------~~~~~~~~~D~~ 61 (254)
T 1hdc_A 2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAREL--------------------GDAARYQHLDVT 61 (254)
T ss_dssp CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT--------------------GGGEEEEECCTT
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--------------------CCceeEEEecCC
Confidence 468999999999999999999999999999999999987766554432 246788999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
|+++++++++++.+++|++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|.|+++ +.|+||++||.
T Consensus 62 ~~~~~~~~~~~~~~~~g~iD~lv~nAg~~~-~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv~isS~ 139 (254)
T 1hdc_A 62 IEEDWQRVVAYAREEFGSVDGLVNNAGIST-GMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDA-GGGSIVNISSA 139 (254)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCCC-CSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCG
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCC-CCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCCEEEEECch
Confidence 999999999999999999999999999876 5778899999999999999999999999999999876 46899999998
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhccc
Q 010380 334 GSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPR 413 (512)
Q Consensus 334 ~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~r 413 (512)
++..+.++...|++||+|+++|+++++.|++++||+||+|+||+|+|++...... .... ......++++
T Consensus 140 -~~~~~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~----~~~~------~~~~~~p~~~ 208 (254)
T 1hdc_A 140 -AGLMGLALTSSYGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMTYTPMTAETGI----RQGE------GNYPNTPMGR 208 (254)
T ss_dssp -GGTSCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHTC----CCST------TSCTTSTTSS
T ss_pred -hhccCCCCchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecccCcCccccccch----hHHH------HHHhcCCCCC
Confidence 5677788899999999999999999999999999999999999999998532100 0000 0011234567
Q ss_pred cc-cchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 414 IR-VVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 414 ~~-~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
+. .|+|+++.+.||+++...+.++..+..+|++
T Consensus 209 ~~~~~~dvA~~v~~l~s~~~~~~tG~~~~vdgG~ 242 (254)
T 1hdc_A 209 VGNEPGEIAGAVVKLLSDTSSYVTGAELAVDGGW 242 (254)
T ss_dssp CB-CHHHHHHHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred CCCCHHHHHHHHHHHhCchhcCCCCCEEEECCCc
Confidence 77 8999999999999987766666666666665
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-38 Score=317.36 Aligned_cols=249 Identities=18% Similarity=0.217 Sum_probs=200.5
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcC------------hhhHHHHHHHHHHHHhhhhhhcCCCCcccc
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRS------------SESVRMTVTELEENLKEGMMAAGGSSKKNL 240 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~------------~~~l~~~~~el~~~~~~~~~~~g~~~~~~~ 240 (512)
.++++|++|||||++|||+++|++|+++|++|++++|+ .+.+++...++..
T Consensus 6 ~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 68 (287)
T 3pxx_A 6 GRVQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEK----------------- 68 (287)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHH-----------------
T ss_pred cccCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHh-----------------
Confidence 35889999999999999999999999999999999998 5666666555544
Q ss_pred cCceEEEEEccCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHh
Q 010380 241 VHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRD 320 (512)
Q Consensus 241 ~g~~v~~v~~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~ 320 (512)
.+.++.++.||++|+++++++++++.+++|++|+||||||+.. .. .+.+.++|++++++|+.|+++++++++|+|.
T Consensus 69 ~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~-~~--~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~- 144 (287)
T 3pxx_A 69 TGRKAYTAEVDVRDRAAVSRELANAVAEFGKLDVVVANAGICP-LG--AHLPVQAFADAFDVDFVGVINTVHAALPYLT- 144 (287)
T ss_dssp TTSCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCC-CC--TTCCTHHHHHHHHHHTHHHHHHHHHHGGGCC-
T ss_pred cCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCcCc-cc--CcCCHHHHHHHhhhhhhhhHHHHHHHHHHhh-
Confidence 4568999999999999999999999999999999999999875 23 3488999999999999999999999999993
Q ss_pred CCCCCeEEeecCCCCCCCCC-----------CCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcc
Q 010380 321 QPKGGHIFNMDGAGSGGSST-----------PLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGST 389 (512)
Q Consensus 321 ~~~~g~IV~vSS~~a~~~~~-----------p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~ 389 (512)
++|+||++||. ++..+. ++...|++||+|+++|+++++.|++++||+||+|+||+|+|+|......
T Consensus 145 --~~g~iv~isS~-~~~~~~~~~~~~~~~~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~ 221 (287)
T 3pxx_A 145 --SGASIITTGSV-AGLIAAAQPPGAGGPQGPGGAGYSYAKQLVDSYTLQLAAQLAPQSIRANVIHPTNVNTDMLNSAPM 221 (287)
T ss_dssp --TTCEEEEECCH-HHHHHHHCCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEESSBSSTTTSSHHH
T ss_pred --cCcEEEEeccc-hhcccccccccccccCCCccchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCccccccccccch
Confidence 46899999986 333332 5677899999999999999999999999999999999999999753211
Q ss_pred hhhhhhhhhh-cCCHHHHHH------HhccccccchhhhhhhhhcCChHHHHHHHHHHhccCccc
Q 010380 390 IQNKQMFNII-CELPETVAR------TLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWF 447 (512)
Q Consensus 390 ~~~~~~~~~~-~~~pe~vA~------~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~ 447 (512)
. ....... .....+... .+-+++..|+|+++++.||+++...+.++..+..||++.
T Consensus 222 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~dva~~v~fL~s~~a~~itG~~i~vdGG~~ 284 (287)
T 3pxx_A 222 Y--RQFRPDLEAPSRADALLAFPAMQAMPTPYVEASDISNAVCFLASDESRYVTGLQFKVDAGAM 284 (287)
T ss_dssp H--HHHCTTSSSCCHHHHHHHGGGGCSSSCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred h--hhhccccccchhHHHHhhhhhhcccCCCCCCHHHHHhhHheecchhhcCCCCceEeECchhh
Confidence 0 0000000 001111111 111577889999999999999998888888888877763
|
| >2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-38 Score=310.76 Aligned_cols=246 Identities=25% Similarity=0.337 Sum_probs=202.5
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
++++|++|||||++|||+++|++|+++|++|++++|+.+ ++..+++.+ .+.++.++.+|++
T Consensus 1 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~--~~~~~~l~~-----------------~~~~~~~~~~D~~ 61 (255)
T 2q2v_A 1 TLKGKTALVTGSTSGIGLGIAQVLARAGANIVLNGFGDP--APALAEIAR-----------------HGVKAVHHPADLS 61 (255)
T ss_dssp CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSCC--HHHHHHHHT-----------------TSCCEEEECCCTT
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch--HHHHHHHHh-----------------cCCceEEEeCCCC
Confidence 367899999999999999999999999999999999876 344444432 2457888999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
|+++++++++++.+++|++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|.|+++ +.|+||++||.
T Consensus 62 ~~~~v~~~~~~~~~~~g~id~lv~~Ag~~~-~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~-~~g~iv~isS~ 139 (255)
T 2q2v_A 62 DVAQIEALFALAEREFGGVDILVNNAGIQH-VAPVEQFPLESWDKIIALNLSAVFHGTRLALPGMRAR-NWGRIINIASV 139 (255)
T ss_dssp SHHHHHHHHHHHHHHHSSCSEEEECCCCCC-CBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECCG
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCC-CCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCcEEEEEcCc
Confidence 999999999999999999999999999876 5778899999999999999999999999999999886 56899999998
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCH----HH--HH
Q 010380 334 GSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELP----ET--VA 407 (512)
Q Consensus 334 ~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~p----e~--vA 407 (512)
++..+.++...|++||+++++|+++++.|++++||+||+|+||+|+|++....... .... ...+ +. ..
T Consensus 140 -~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~-~~~~----~~~~~~~~~~~~~~ 213 (255)
T 2q2v_A 140 -HGLVGSTGKAAYVAAKHGVVGLTKVVGLETATSNVTCNAICPGWVLTPLVQKQIDD-RAAN----GGDPLQAQHDLLAE 213 (255)
T ss_dssp -GGTSCCTTBHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEEESSBCCHHHHHHHHH-HHHH----TCCHHHHHHHHHTT
T ss_pred -hhccCCCCchhHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCCCcCcchhhhccc-cccc----ccchHHHHHHHHhc
Confidence 66777888999999999999999999999999999999999999999985321000 0000 0001 11 11
Q ss_pred HHhccccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 408 RTLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 408 ~~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
..+++++..|+|+++++.||+++...+.++..+..+|++
T Consensus 214 ~~p~~~~~~~~dvA~~~~~l~s~~~~~~tG~~~~vdgG~ 252 (255)
T 2q2v_A 214 KQPSLAFVTPEHLGELVLFLCSEAGSQVRGAAWNVDGGW 252 (255)
T ss_dssp TCTTCCCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTG
T ss_pred cCCCCCCcCHHHHHHHHHHHhCCccCCCCCCEEEECCCc
Confidence 235678889999999999999987655555556566554
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-38 Score=309.34 Aligned_cols=248 Identities=17% Similarity=0.171 Sum_probs=208.3
Q ss_pred CCCCCCEEEEECCC--ChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEc
Q 010380 173 CKAGPRNVVITGST--RGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIAC 250 (512)
Q Consensus 173 ~~l~gk~vLVTGas--sGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~ 250 (512)
+++++|++|||||+ +|||+++|++|+++|++|++++|+....+. .+++.+.. .+.++.++.|
T Consensus 3 ~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~-~~~~~~~~---------------~~~~~~~~~~ 66 (266)
T 3oig_A 3 FSLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKS-VHELAGTL---------------DRNDSIILPC 66 (266)
T ss_dssp SCCTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHH-HHHHHHTS---------------SSCCCEEEEC
T ss_pred cccCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHH-HHHHHHhc---------------CCCCceEEeC
Confidence 46889999999999 679999999999999999999999655443 33333311 1237889999
Q ss_pred cCCChhhHHHHHHHHHHHcCCCcccccccccCCC---CCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeE
Q 010380 251 DVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKG---FKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHI 327 (512)
Q Consensus 251 Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~---~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~I 327 (512)
|++|+++++++++++.++++++|+||||||+... ..++.+.+.++|++++++|+.++++++++++|+|++ +|+|
T Consensus 67 D~~~~~~v~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~---~g~i 143 (266)
T 3oig_A 67 DVTNDAEIETCFASIKEQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTE---GGSI 143 (266)
T ss_dssp CCSSSHHHHHHHHHHHHHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTT---CEEE
T ss_pred CCCCHHHHHHHHHHHHHHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCC---CceE
Confidence 9999999999999999999999999999998642 356788999999999999999999999999999974 5899
Q ss_pred EeecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHH
Q 010380 328 FNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVA 407 (512)
Q Consensus 328 V~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA 407 (512)
|++||. ++..+.++...|++||+|+++|+++|+.|++++||+||+|+||+|+|++........ .. ......
T Consensus 144 v~isS~-~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~--~~------~~~~~~ 214 (266)
T 3oig_A 144 VTLTYL-GGELVMPNYNVMGVAKASLDASVKYLAADLGKENIRVNSISAGPIRTLSAKGISDFN--SI------LKDIEE 214 (266)
T ss_dssp EEEECG-GGTSCCTTTHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSGGGTTCTTHH--HH------HHHHHH
T ss_pred EEEecc-cccccCCCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccccccccccchH--HH------HHHHHh
Confidence 999998 678888999999999999999999999999999999999999999999875432211 11 122234
Q ss_pred HHhccccccchhhhhhhhhcCChHHHHHHHHHHhccCcccc
Q 010380 408 RTLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWFD 448 (512)
Q Consensus 408 ~~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~~ 448 (512)
..+++++..|+|+++++.||+++...+.++..+..||+|..
T Consensus 215 ~~~~~~~~~p~dva~~v~~l~s~~~~~~tG~~i~vdGG~~~ 255 (266)
T 3oig_A 215 RAPLRRTTTPEEVGDTAAFLFSDMSRGITGENLHVDSGFHI 255 (266)
T ss_dssp HSTTSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGG
T ss_pred cCCCCCCCCHHHHHHHHHHHcCCchhcCcCCEEEECCCeEE
Confidence 55678889999999999999999877777878888887743
|
| >3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-38 Score=311.43 Aligned_cols=236 Identities=15% Similarity=0.190 Sum_probs=187.6
Q ss_pred cccCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEE
Q 010380 170 EEHCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIA 249 (512)
Q Consensus 170 ~~~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~ 249 (512)
...+++++|++|||||++|||+++|++|+++|++|++++|+.+++.+ ++.+ ..+.++.
T Consensus 20 ~~~m~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~---~~~~-------------------~~~~~~~ 77 (260)
T 3gem_A 20 QGHMTLSSAPILITGASQRVGLHCALRLLEHGHRVIISYRTEHASVT---ELRQ-------------------AGAVALY 77 (260)
T ss_dssp -------CCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESSCCHHHH---HHHH-------------------HTCEEEE
T ss_pred ccCcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHH---HHHh-------------------cCCeEEE
Confidence 34678999999999999999999999999999999999999876533 2322 1267899
Q ss_pred ccCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEe
Q 010380 250 CDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFN 329 (512)
Q Consensus 250 ~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~ 329 (512)
+|++|+++++++++++.+++|++|+||||||+.. ..+ .+.+.++|++++++|+.|+++++++++|+|+++ +.|+||+
T Consensus 78 ~Dv~~~~~v~~~~~~~~~~~g~iD~lv~nAg~~~-~~~-~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~-~~g~iv~ 154 (260)
T 3gem_A 78 GDFSCETGIMAFIDLLKTQTSSLRAVVHNASEWL-AET-PGEEADNFTRMFSVHMLAPYLINLHCEPLLTAS-EVADIVH 154 (260)
T ss_dssp CCTTSHHHHHHHHHHHHHHCSCCSEEEECCCCCC-CCC-TTCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTS-SSCEEEE
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCCEEEECCCccC-CCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcEEEE
Confidence 9999999999999999999999999999999876 333 677889999999999999999999999999987 5789999
Q ss_pred ecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHH
Q 010380 330 MDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVART 409 (512)
Q Consensus 330 vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~ 409 (512)
+||. ++..+.++...|++||+|+++|+++|+.|+++ +|+||+|+||+|+|++..... . ........
T Consensus 155 isS~-~~~~~~~~~~~Y~asKaa~~~l~~~la~e~~~-~Irvn~v~PG~v~t~~~~~~~------~------~~~~~~~~ 220 (260)
T 3gem_A 155 ISDD-VTRKGSSKHIAYCATKAGLESLTLSFAARFAP-LVKVNGIAPALLMFQPKDDAA------Y------RANALAKS 220 (260)
T ss_dssp ECCG-GGGTCCSSCHHHHHHHHHHHHHHHHHHHHHTT-TCEEEEEEECTTCC---------------------------C
T ss_pred ECCh-hhcCCCCCcHhHHHHHHHHHHHHHHHHHHHCC-CCEEEEEeecccccCCCCCHH------H------HHHHHhcC
Confidence 9998 67788889999999999999999999999998 699999999999999753110 0 11223456
Q ss_pred hccccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 410 LVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 410 ~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
+++++..|+|++.++.||+ ...+.++..+..||++
T Consensus 221 p~~r~~~~edva~~v~~L~--~~~~itG~~i~vdGG~ 255 (260)
T 3gem_A 221 ALGIEPGAEVIYQSLRYLL--DSTYVTGTTLTVNGGR 255 (260)
T ss_dssp CSCCCCCTHHHHHHHHHHH--HCSSCCSCEEEESTTT
T ss_pred CCCCCCCHHHHHHHHHHHh--hCCCCCCCEEEECCCc
Confidence 7788899999999999998 2334455555556554
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-37 Score=309.34 Aligned_cols=254 Identities=19% Similarity=0.257 Sum_probs=196.0
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
++++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+.. ..+.++.++.+|++
T Consensus 3 ~~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~D~~ 68 (278)
T 1spx_A 3 RFAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAG--------------VSEQNVNSVVADVT 68 (278)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--------------CCGGGEEEEECCTT
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcc--------------cCCCceeEEecccC
Confidence 4689999999999999999999999999999999999988887776663210 02357889999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCC----CHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEe
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQF----TNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFN 329 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~----s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~ 329 (512)
|+++++++++++.+++|++|+||||||+.. ..++.+. +.++|++++++|+.|+++++++++|.|+++ +|+||+
T Consensus 69 ~~~~~~~~~~~~~~~~g~id~lv~~Ag~~~-~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~--~g~iv~ 145 (278)
T 1spx_A 69 TDAGQDEILSTTLGKFGKLDILVNNAGAAI-PDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSST--KGEIVN 145 (278)
T ss_dssp SHHHHHHHHHHHHHHHSCCCEEEECCC--------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCC-CcccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhc--CCeEEE
Confidence 999999999999999999999999999876 4667777 999999999999999999999999999875 389999
Q ss_pred ecCCCCC-CCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHH
Q 010380 330 MDGAGSG-GSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVAR 408 (512)
Q Consensus 330 vSS~~a~-~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~ 408 (512)
+||. ++ ..+.++...|++||+++++|+++++.|++++||+||+|+||+|+|++........ ................
T Consensus 146 isS~-~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~-~~~~~~~~~~~~~~~~ 223 (278)
T 1spx_A 146 ISSI-ASGLHATPDFPYYSIAKAAIDQYTRNTAIDLIQHGIRVNSISPGLVATGFGSAMGMPE-ETSKKFYSTMATMKEC 223 (278)
T ss_dssp ECCT-TSSSSCCTTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCCC---------------HHHHHHHHHH
T ss_pred Eecc-cccccCCCCccHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccCccccccccCc-hhhhhhhHHHHHHHhc
Confidence 9998 45 7778889999999999999999999999999999999999999999864321100 0000000000111223
Q ss_pred HhccccccchhhhhhhhhcCChHHHH-HHHHHHhccCcc
Q 010380 409 TLVPRIRVVKGSGKAINYLTPPRILL-ALVTAWLRRGRW 446 (512)
Q Consensus 409 ~~l~r~~~~~~va~~v~~L~s~~~~~-~~~~~~~~~g~~ 446 (512)
.+++++..|+|+++++.||+++...+ .++..+..+|++
T Consensus 224 ~p~~~~~~~~dvA~~v~~l~s~~~~~~~tG~~~~vdgG~ 262 (278)
T 1spx_A 224 VPAGVMGQPQDIAEVIAFLADRKTSSYIIGHQLVVDGGS 262 (278)
T ss_dssp CTTSSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTTG
T ss_pred CCCcCCCCHHHHHHHHHHHcCccccCcccCcEEEECCCc
Confidence 45678899999999999999987654 555555555554
|
| >2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-37 Score=318.22 Aligned_cols=242 Identities=17% Similarity=0.197 Sum_probs=205.9
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEE-cChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 175 AGPRNVVITGSTRGLGKALAREFLLSGDRVVVAS-RSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 175 l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~-R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
+++|++|||||++|||+++|++|+++|++|++++ |+.++++++.+++... .+.++.++.+|++
T Consensus 44 l~~k~~lVTGas~GIG~aia~~La~~G~~Vv~~~~r~~~~~~~~~~~l~~~----------------~~~~~~~~~~Dl~ 107 (328)
T 2qhx_A 44 PTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNAR----------------RPNSAITVQADLS 107 (328)
T ss_dssp -CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHH----------------STTCEEEEECCCS
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhh----------------cCCeEEEEEeeCC
Confidence 7899999999999999999999999999999999 9998888887777531 3457889999999
Q ss_pred Chh-----------------hHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCC--------------HHHHHHHHHh
Q 010380 254 EPA-----------------DVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFT--------------NEEIEQIVST 302 (512)
Q Consensus 254 d~~-----------------sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s--------------~e~~~~~~~v 302 (512)
|++ +++++++++.+++|++|+||||||+.. ..++.+.+ .++|++++++
T Consensus 108 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lVnnAG~~~-~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~v 186 (328)
T 2qhx_A 108 NVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFY-PTPLLRNDEDGHEPCVGDREAMETATADLFGS 186 (328)
T ss_dssp SSCBCC-------CCBCHHHHHHHHHHHHHHHHSCCCEEEECCCCCC-CCCSCC-------------CHHHHHHHHHHHH
T ss_pred CchhccccccccccccccHHHHHHHHHHHHHhcCCCCEEEECCCCCC-CCChhhcCccccccccccccccHHHHHHHHHH
Confidence 999 999999999999999999999999876 57778888 9999999999
Q ss_pred hhhhHHHHHHHHHHHHHhCCC-----CCeEEeecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCC
Q 010380 303 NLVGSILCTREAMRVMRDQPK-----GGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPG 377 (512)
Q Consensus 303 Nv~g~~~l~k~~lp~m~~~~~-----~g~IV~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG 377 (512)
|+.|+++++++++|.|.+++. .|+||++||. .+..+.++...|++||+|+++|+++|+.|++++||+||+|+||
T Consensus 187 N~~g~~~l~~~~~~~m~~~~~~~~~~~g~IV~isS~-~~~~~~~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG 265 (328)
T 2qhx_A 187 NAIAPYFLIKAFAHRVAGTPAKHRGTNYSIINMVDA-MTNQPLLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPG 265 (328)
T ss_dssp HTHHHHHHHHHHHHHHHHSCGGGSCSCEEEEEECCT-TTTSCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEES
T ss_pred HHHHHHHHHHHHHHHHHhcCCcCCCCCcEEEEECch-hhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecC
Confidence 999999999999999987631 6899999998 6777888999999999999999999999999999999999999
Q ss_pred cccCCcccCCcchhhhhhhhhhcCCHHHHHHHhcc-ccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 378 MVLTDLLLSGSTIQNKQMFNIICELPETVARTLVP-RIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 378 ~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~-r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
+|+|++ .. .. ... .......+++ ++..|+|+++++.||+++...+.++..+..||++
T Consensus 266 ~v~T~~-~~-~~----~~~------~~~~~~~p~~~r~~~pedvA~~v~~l~s~~~~~itG~~i~vdGG~ 323 (328)
T 2qhx_A 266 LSVLVD-DM-PP----AVW------EGHRSKVPLYQRDSSAAEVSDVVIFLCSSKAKYITGTCVKVDGGY 323 (328)
T ss_dssp SBSCCC-CS-CH----HHH------HHHHTTCTTTTSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred cccCCc-cc-cH----HHH------HHHHhhCCCCCCCCCHHHHHHHHHHHhCccccCccCcEEEECCCc
Confidence 999998 32 11 110 0111224566 8889999999999999988767677777777765
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-37 Score=312.36 Aligned_cols=250 Identities=21% Similarity=0.274 Sum_probs=203.2
Q ss_pred cCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhh-HHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEc
Q 010380 172 HCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSES-VRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIAC 250 (512)
Q Consensus 172 ~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~-l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~ 250 (512)
.+++++|++|||||++|||+++|++|+++|++|++++|+.++ ++++.+++.+ .+.++.++.+
T Consensus 24 ~~~~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-----------------~~~~~~~~~~ 86 (283)
T 1g0o_A 24 SASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKK-----------------NGSDAACVKA 86 (283)
T ss_dssp GGCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH-----------------TTCCEEEEEC
T ss_pred ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHH-----------------hCCCeEEEEc
Confidence 456889999999999999999999999999999999998754 4555555544 3467889999
Q ss_pred cCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEee
Q 010380 251 DVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNM 330 (512)
Q Consensus 251 Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~v 330 (512)
|++|+++++++++++.+.++++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|.|. +.|+||++
T Consensus 87 D~~~~~~~~~~~~~~~~~~g~iD~lv~~Ag~~~-~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~---~~g~iv~i 162 (283)
T 1g0o_A 87 NVGVVEDIVRMFEEAVKIFGKLDIVCSNSGVVS-FGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLE---IGGRLILM 162 (283)
T ss_dssp CTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCC-CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSC---TTCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCEEEECCCcCC-CCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHh---cCCeEEEE
Confidence 999999999999999999999999999999876 57788999999999999999999999999999993 46899999
Q ss_pred cCCCCCCCCCC-CcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHH---HH
Q 010380 331 DGAGSGGSSTP-LTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPE---TV 406 (512)
Q Consensus 331 SS~~a~~~~~p-~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe---~v 406 (512)
||. ++..+.+ +...|++||+|+++|+++++.|++++||+||+|+||+|+|+|.......... ......++ ..
T Consensus 163 sS~-~~~~~~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~---~~~~~~~~~~~~~ 238 (283)
T 1g0o_A 163 GSI-TGQAKAVPKHAVYSGSKGAIETFARCMAIDMADKKITVNVVAPGGIKTDMYHAVCREYIP---NGENLSNEEVDEY 238 (283)
T ss_dssp CCG-GGTCSSCSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGGST---TCTTCCHHHHHHH
T ss_pred ech-hhccCCCCCCcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccchhhhhhhhhccc---cccccCHHHHHHH
Confidence 997 4555555 4889999999999999999999999999999999999999985321000000 00000111 11
Q ss_pred -H--HHhccccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 407 -A--RTLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 407 -A--~~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
. ..+++++..|+|+++++.||+++...+.++..+..||++
T Consensus 239 ~~~~~~p~~r~~~p~dvA~~v~~l~s~~~~~itG~~i~vdgG~ 281 (283)
T 1g0o_A 239 AAVQWSPLRRVGLPIDIARVVCFLASNDGGWVTGKVIGIDGGA 281 (283)
T ss_dssp HHHHSCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTC
T ss_pred HhhcCCCCCCCcCHHHHHHHHHHHhCccccCcCCCEEEeCCCc
Confidence 1 346778899999999999999988766666666666654
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-37 Score=312.22 Aligned_cols=193 Identities=27% Similarity=0.409 Sum_probs=181.0
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
++++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+ .+.++.++.||++
T Consensus 28 ~l~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~-----------------~~~~~~~~~~Dv~ 90 (301)
T 3tjr_A 28 GFDGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRG-----------------QGFDAHGVVCDVR 90 (301)
T ss_dssp CSTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-----------------TTCCEEEEECCTT
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh-----------------cCCceEEEEccCC
Confidence 37899999999999999999999999999999999999999888888765 3568899999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
|+++++++++++.+++|++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|.|++++.+|+||++||.
T Consensus 91 d~~~v~~~~~~~~~~~g~id~lvnnAg~~~-~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~ 169 (301)
T 3tjr_A 91 HLDEMVRLADEAFRLLGGVDVVFSNAGIVV-AGPLAQMNHDDWRWVIDIDLWGSIHAVEAFLPRLLEQGTGGHIAFTASF 169 (301)
T ss_dssp CHHHHHHHHHHHHHHHSSCSEEEECCCCCC-CBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCG
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEECCCcCC-CCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcEEEEeCch
Confidence 999999999999999999999999999987 6888999999999999999999999999999999987447899999998
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCccc
Q 010380 334 GSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLL 385 (512)
Q Consensus 334 ~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~ 385 (512)
++..+.++...|++||+|+++|+++|+.|+++.||+||+|+||+|+|+|..
T Consensus 170 -~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~ 220 (301)
T 3tjr_A 170 -AGLVPNAGLGTYGVAKYGVVGLAETLAREVKPNGIGVSVLCPMVVETKLVS 220 (301)
T ss_dssp -GGTSCCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEECCSCCCSSHHH
T ss_pred -hhcCCCCCchHHHHHHHHHHHHHHHHHHHhcccCcEEEEEECCcccccccc
Confidence 678889999999999999999999999999999999999999999999874
|
| >1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-37 Score=310.30 Aligned_cols=242 Identities=21% Similarity=0.225 Sum_probs=196.9
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEc-ChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEcc
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASR-SSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACD 251 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R-~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~D 251 (512)
.++++|++|||||++|||+++|++|+++|++|++++| ++++++++.+++.+. .+.++.++.+|
T Consensus 7 ~~~~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~----------------~~~~~~~~~~D 70 (276)
T 1mxh_A 7 EASECPAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAA----------------RAGSAVLCKGD 70 (276)
T ss_dssp ----CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHH----------------STTCEEEEECC
T ss_pred hccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHh----------------cCCceEEEecc
Confidence 3568999999999999999999999999999999999 888888777777542 14578899999
Q ss_pred CCCh----hhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCH-----------HHHHHHHHhhhhhHHHHHHHHHH
Q 010380 252 VCEP----ADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTN-----------EEIEQIVSTNLVGSILCTREAMR 316 (512)
Q Consensus 252 ltd~----~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~-----------e~~~~~~~vNv~g~~~l~k~~lp 316 (512)
++|+ ++++++++++.+++|++|+||||||+.. ..++.+.+. ++|++++++|+.|+++++++++|
T Consensus 71 l~~~~~~~~~~~~~~~~~~~~~g~id~lv~nAg~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~ 149 (276)
T 1mxh_A 71 LSLSSSLLDCCEDIIDCSFRAFGRCDVLVNNASAYY-PTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFAR 149 (276)
T ss_dssp CSSSTTHHHHHHHHHHHHHHHHSCCCEEEECCCCCC-CCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred CCCccccHHHHHHHHHHHHHhcCCCCEEEECCCCCC-CCCccccCcccccccccchHHHHHHHHHhccHHHHHHHHHHHH
Confidence 9999 9999999999999999999999999876 567788888 99999999999999999999999
Q ss_pred HHHhCCCC------CeEEeecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcch
Q 010380 317 VMRDQPKG------GHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTI 390 (512)
Q Consensus 317 ~m~~~~~~------g~IV~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~ 390 (512)
.|. + +. ++||++||. ++..+.++...|++||+|+++|+++|+.|++++||+||+|+||+|.|+ . ....
T Consensus 150 ~~~-~-~~~~~~~~g~iv~isS~-~~~~~~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~v~~v~PG~v~t~-~-~~~~- 223 (276)
T 1mxh_A 150 RQG-E-GGAWRSRNLSVVNLCDA-MTDLPLPGFCVYTMAKHALGGLTRAAALELAPRHIRVNAVAPGLSLLP-P-AMPQ- 223 (276)
T ss_dssp TC---------CCCEEEEEECCG-GGGSCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSCC-S-SSCH-
T ss_pred HHh-c-CCCCCCCCcEEEEECch-hhcCCCCCCeehHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcccCC-c-cCCH-
Confidence 997 4 34 899999998 677788899999999999999999999999999999999999999999 2 1111
Q ss_pred hhhhhhhhhcCCHHHHHHHhccc-cccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 391 QNKQMFNIICELPETVARTLVPR-IRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 391 ~~~~~~~~~~~~pe~vA~~~l~r-~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
... .......++++ +..|+|+++++.||+++...+.++..+..+|++
T Consensus 224 ---~~~------~~~~~~~p~~r~~~~~~dva~~v~~l~s~~~~~~tG~~~~vdgG~ 271 (276)
T 1mxh_A 224 ---ETQ------EEYRRKVPLGQSEASAAQIADAIAFLVSKDAGYITGTTLKVDGGL 271 (276)
T ss_dssp ---HHH------HHHHTTCTTTSCCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred ---HHH------HHHHhcCCCCCCCCCHHHHHHHHHHHhCccccCccCcEEEECCch
Confidence 100 01111234567 889999999999999987666566666666655
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-38 Score=309.86 Aligned_cols=248 Identities=14% Similarity=0.131 Sum_probs=202.8
Q ss_pred cccCCCCCCEEEEECCC--ChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEE
Q 010380 170 EEHCKAGPRNVVITGST--RGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAG 247 (512)
Q Consensus 170 ~~~~~l~gk~vLVTGas--sGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~ 247 (512)
....++++|++|||||+ +|||+++|++|+++|++|++++|+.... +..+++.+. ..++.+
T Consensus 7 ~~~~~~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~-~~~~~~~~~-----------------~~~~~~ 68 (271)
T 3ek2_A 7 HHMGFLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFK-DRITEFAAE-----------------FGSELV 68 (271)
T ss_dssp --CCTTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGH-HHHHHHHHH-----------------TTCCCE
T ss_pred CCccccCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhH-HHHHHHHHH-----------------cCCcEE
Confidence 34567899999999999 9999999999999999999999995443 344444332 234778
Q ss_pred EEccCCChhhHHHHHHHHHHHcCCCcccccccccCCCC---CCCcC-CCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCC
Q 010380 248 IACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGF---KPLLQ-FTNEEIEQIVSTNLVGSILCTREAMRVMRDQPK 323 (512)
Q Consensus 248 v~~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~---~~~~~-~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~ 323 (512)
+.||++|+++++++++++.+++++||+||||||+.... .++.+ .+.++|++++++|+.++++++++++|.|++
T Consensus 69 ~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~--- 145 (271)
T 3ek2_A 69 FPCDVADDAQIDALFASLKTHWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSD--- 145 (271)
T ss_dssp EECCTTCHHHHHHHHHHHHHHCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEE---
T ss_pred EECCCCCHHHHHHHHHHHHHHcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhcc---
Confidence 99999999999999999999999999999999987521 45555 999999999999999999999999999974
Q ss_pred CCeEEeecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCH
Q 010380 324 GGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELP 403 (512)
Q Consensus 324 ~g~IV~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~p 403 (512)
.|+||++||. ++..+.++...|++||+|+++|+++|+.|++++||+||+|+||+|+|+|....... ... ..
T Consensus 146 ~g~iv~isS~-~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~--~~~------~~ 216 (271)
T 3ek2_A 146 DASLLTLSYL-GAERAIPNYNTMGLAKAALEASVRYLAVSLGAKGVRVNAISAGPIKTLAASGIKSF--GKI------LD 216 (271)
T ss_dssp EEEEEEEECG-GGTSBCTTTTHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCC-----CCCHHH--HHH------HH
T ss_pred CceEEEEecc-ccccCCCCccchhHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccchhhhcccch--HHH------HH
Confidence 5799999998 67788899999999999999999999999999999999999999999987543211 111 12
Q ss_pred HHHHHHhccccccchhhhhhhhhcCChHHHHHHHHHHhccCccc
Q 010380 404 ETVARTLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWF 447 (512)
Q Consensus 404 e~vA~~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~ 447 (512)
......+++++..|+++++.+.||+++...+.++..+..||++.
T Consensus 217 ~~~~~~~~~~~~~pedva~~i~~l~s~~~~~~tG~~i~vdgG~~ 260 (271)
T 3ek2_A 217 FVESNSPLKRNVTIEQVGNAGAFLLSDLASGVTAEVMHVDSGFN 260 (271)
T ss_dssp HHHHHSTTSSCCCHHHHHHHHHHHHSGGGTTCCSEEEEESTTGG
T ss_pred HHHhcCCcCCCCCHHHHHHHHHHHcCcccCCeeeeEEEECCCee
Confidence 23345677889999999999999999987777787888887774
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-38 Score=310.11 Aligned_cols=238 Identities=23% Similarity=0.299 Sum_probs=199.1
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
++++|+++||||++|||+++|++|+++|++|++++|++++++++.+++ ..++.++.+|++
T Consensus 3 ~l~~k~vlITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~--------------------~~~~~~~~~D~~ 62 (263)
T 2a4k_A 3 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAAL--------------------EAEAIAVVADVS 62 (263)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTC--------------------CSSEEEEECCTT
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--------------------cCceEEEEcCCC
Confidence 478999999999999999999999999999999999988766544332 246888999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
|+++++++++++.+++|++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|.| ++ .|+||++||.
T Consensus 63 ~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~-~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~-~~--~g~iv~isS~ 138 (263)
T 2a4k_A 63 DPKAVEAVFAEALEEFGRLHGVAHFAGVAH-SALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVL-EE--GGSLVLTGSV 138 (263)
T ss_dssp SHHHHHHHHHHHHHHHSCCCEEEEGGGGTT-TTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC-CT--TCEEEEECCC
T ss_pred CHHHHHHHHHHHHHHcCCCcEEEECCCCCC-CCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHH-hc--CCEEEEEecc
Confidence 999999999999999999999999999976 5778899999999999999999999999999999 43 6899999998
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhccc
Q 010380 334 GSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPR 413 (512)
Q Consensus 334 ~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~r 413 (512)
++. +.++...|++||+|+++|+++++.|++++||+||+|+||+|+|++...... ... .......++++
T Consensus 139 -~~~-~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~----~~~------~~~~~~~p~~~ 206 (263)
T 2a4k_A 139 -AGL-GAFGLAHYAAGKLGVVGLARTLALELARKGVRVNVLLPGLIQTPMTAGLPP----WAW------EQEVGASPLGR 206 (263)
T ss_dssp -TTC-CHHHHHHHHHCSSHHHHHHHHHHHHHTTTTCEEEEEEECSBCCGGGTTSCH----HHH------HHHHHTSTTCS
T ss_pred -hhc-CCCCcHHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEEeCcCcCchhhhcCH----HHH------HHHHhcCCCCC
Confidence 455 677788999999999999999999999999999999999999998653211 000 11122345678
Q ss_pred cccchhhhhhhhhcCChHHHHHHHHHHhccCccc
Q 010380 414 IRVVKGSGKAINYLTPPRILLALVTAWLRRGRWF 447 (512)
Q Consensus 414 ~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~ 447 (512)
+..|+|+++.+.||+++...+.++..+..+|++.
T Consensus 207 ~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdgG~~ 240 (263)
T 2a4k_A 207 AGRPEEVAQAALFLLSEESAYITGQALYVDGGRS 240 (263)
T ss_dssp CBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTTT
T ss_pred CcCHHHHHHHHHHHhCccccCCcCCEEEECCCcc
Confidence 8999999999999999887666777777777653
|
| >3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-37 Score=308.89 Aligned_cols=232 Identities=26% Similarity=0.345 Sum_probs=195.5
Q ss_pred cCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEcc
Q 010380 172 HCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACD 251 (512)
Q Consensus 172 ~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~D 251 (512)
.+++++|++|||||++|||+++|++|+++|++|++++|+.+.. ...++.++.+|
T Consensus 23 m~~~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~--------------------------~~~~~~~~~~D 76 (260)
T 3un1_A 23 MMRNQQKVVVITGASQGIGAGLVRAYRDRNYRVVATSRSIKPS--------------------------ADPDIHTVAGD 76 (260)
T ss_dssp HHHTTCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCCCC--------------------------SSTTEEEEESC
T ss_pred hhCcCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhhc--------------------------ccCceEEEEcc
Confidence 3467899999999999999999999999999999999986542 12368889999
Q ss_pred CCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeec
Q 010380 252 VCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD 331 (512)
Q Consensus 252 ltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vS 331 (512)
++|+++++++++++.+++|++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|.|+++ +.|+||++|
T Consensus 77 v~d~~~v~~~~~~~~~~~g~iD~lv~nAg~~~-~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~iv~is 154 (260)
T 3un1_A 77 ISKPETADRIVREGIERFGRIDSLVNNAGVFL-AKPFVEMTQEDYDHNLGVNVAGFFHITQRAAAEMLKQ-GSGHIVSIT 154 (260)
T ss_dssp TTSHHHHHHHHHHHHHHHSCCCEEEECCCCCC-CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHCCCCCEEEECCCCCC-CCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCcEEEEEe
Confidence 99999999999999999999999999999987 6788999999999999999999999999999999987 578999999
Q ss_pred CCCCC-CCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHh
Q 010380 332 GAGSG-GSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTL 410 (512)
Q Consensus 332 S~~a~-~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~ 410 (512)
|.... ..+.++...|++||+|+++|+++++.|++++||+||+|+||+|+|||..... . .......+
T Consensus 155 S~~~~~~~~~~~~~~Y~~sKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~---~----------~~~~~~~p 221 (260)
T 3un1_A 155 TSLVDQPMVGMPSALASLTKGGLNAVTRSLAMEFSRSGVRVNAVSPGVIKTPMHPAET---H----------STLAGLHP 221 (260)
T ss_dssp CTTTTSCBTTCCCHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEEECCBCCTTSCGGG---H----------HHHHTTST
T ss_pred chhhccCCCCCccHHHHHHHHHHHHHHHHHHHHhCcCCeEEEEEeecCCCCCCCCHHH---H----------HHHhccCC
Confidence 87322 1344566899999999999999999999999999999999999999863210 0 11122346
Q ss_pred ccccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 411 VPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 411 l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
++++..|+|+++++.|| +...+.++..+..||++
T Consensus 222 ~~r~~~~~dva~av~~L--~~~~~itG~~i~vdGG~ 255 (260)
T 3un1_A 222 VGRMGEIRDVVDAVLYL--EHAGFITGEILHVDGGQ 255 (260)
T ss_dssp TSSCBCHHHHHHHHHHH--HHCTTCCSCEEEESTTG
T ss_pred CCCCcCHHHHHHHHHHh--cccCCCCCcEEEECCCe
Confidence 78899999999999999 44445556666666654
|
| >3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-38 Score=307.22 Aligned_cols=243 Identities=22% Similarity=0.259 Sum_probs=206.9
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEE-EcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVA-SRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~-~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
++++|++|||||++|||+++|++|+++|++|+++ +|+.+++++..+++.+ .+.++.++.+|+
T Consensus 4 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~D~ 66 (255)
T 3icc_A 4 MLKGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQS-----------------NGGSAFSIGANL 66 (255)
T ss_dssp TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCSHHHHHHHHHHHH-----------------TTCEEEEEECCT
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHh-----------------cCCceEEEecCc
Confidence 5789999999999999999999999999999885 6778888877777765 456889999999
Q ss_pred CChhhHHHHHHHHHHHcC------CCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCe
Q 010380 253 CEPADVQKLSNFAVNEFG------SIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGH 326 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g------~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~ 326 (512)
+|.++++++++++.+.++ ++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|.|++ .++
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~id~lv~nAg~~~-~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~---~~~ 142 (255)
T 3icc_A 67 ESLHGVEALYSSLDNELQNRTGSTKFDILINNAGIGP-GAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRD---NSR 142 (255)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHSSSCEEEEEECCCCCC-CBCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEE---EEE
T ss_pred CCHHHHHHHHHHHHHHhcccccCCcccEEEECCCCCC-CCChhhCCHHHHHHHHhhhchHHHHHHHHHHHhhCC---CCE
Confidence 999999999999988764 4999999999876 678889999999999999999999999999999953 579
Q ss_pred EEeecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHH
Q 010380 327 IFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETV 406 (512)
Q Consensus 327 IV~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~v 406 (512)
||++||. ++..+.|+...|++||+|+++|+++|+.|++++||+||+|+||+|+|+|......... . .....
T Consensus 143 iv~isS~-~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~--~------~~~~~ 213 (255)
T 3icc_A 143 IINISSA-ATRISLPDFIAYSMTKGAINTMTFTLAKQLGARGITVNAILPGFVKTDMNAELLSDPM--M------KQYAT 213 (255)
T ss_dssp EEEECCG-GGTSCCTTBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCSSSTTTTTSHH--H------HHHHH
T ss_pred EEEeCCh-hhccCCCCcchhHHhHHHHHHHHHHHHHHHHhcCeEEEEEEEeeecccchhhhcccHH--H------HHhhh
Confidence 9999998 6788889999999999999999999999999999999999999999999755322110 0 01112
Q ss_pred HHHhccccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 407 ARTLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 407 A~~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
...+++++..|+|+++++.||+++...+.++..+..||++
T Consensus 214 ~~~~~~~~~~~~dva~~~~~l~s~~~~~~tG~~i~vdgG~ 253 (255)
T 3icc_A 214 TISAFNRLGEVEDIADTAAFLASPDSRWVTGQLIDVSGGS 253 (255)
T ss_dssp HTSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESSST
T ss_pred ccCCcCCCCCHHHHHHHHHHHhCcccCCccCCEEEecCCe
Confidence 2345688899999999999999988766666666666654
|
| >3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-38 Score=313.03 Aligned_cols=237 Identities=23% Similarity=0.237 Sum_probs=188.6
Q ss_pred cCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEcc
Q 010380 172 HCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACD 251 (512)
Q Consensus 172 ~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~D 251 (512)
.+++++|++|||||++|||+++|++|+++|++|++++|+.++.. ++ .+.++.++.+|
T Consensus 4 ~m~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~---~~--------------------~~~~~~~~~~D 60 (257)
T 3tl3_A 4 SMEIRDAVAVVTGGASGLGLATTKRLLDAGAQVVVLDIRGEDVV---AD--------------------LGDRARFAAAD 60 (257)
T ss_dssp ------CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCHHHH---HH--------------------TCTTEEEEECC
T ss_pred cceecCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCchHHHH---Hh--------------------cCCceEEEECC
Confidence 35788999999999999999999999999999999999755321 11 23578899999
Q ss_pred CCChhhHHHHHHHHHHHcCCCcccccccccCCCCCC----CcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhC------
Q 010380 252 VCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKP----LLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQ------ 321 (512)
Q Consensus 252 ltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~----~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~------ 321 (512)
++|+++++++++.+.+ ++++|+||||||+.. ..+ ..+.+.++|++++++|+.|+++++++++|+|.++
T Consensus 61 ~~~~~~v~~~~~~~~~-~g~id~lv~nAg~~~-~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~~ 138 (257)
T 3tl3_A 61 VTDEAAVASALDLAET-MGTLRIVVNCAGTGN-AIRVLSRDGVFSLAAFRKIVDINLVGSFNVLRLAAERIAKTEPVGPN 138 (257)
T ss_dssp TTCHHHHHHHHHHHHH-HSCEEEEEECGGGSH-HHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC--C
T ss_pred CCCHHHHHHHHHHHHH-hCCCCEEEECCCCCC-CcccccccccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccccc
Confidence 9999999999998877 999999999999864 222 2358999999999999999999999999999872
Q ss_pred -CCCCeEEeecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhc
Q 010380 322 -PKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIIC 400 (512)
Q Consensus 322 -~~~g~IV~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~ 400 (512)
.+.|+||++||. ++..+.++...|++||+|+++|+++|+.|++++||+||+|+||+|+|+|.........
T Consensus 139 ~~~~g~iv~isS~-~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~-------- 209 (257)
T 3tl3_A 139 AEERGVIINTASV-AAFDGQIGQAAYSASKGGVVGMTLPIARDLASHRIRVMTIAPGLFDTPLLASLPEEAR-------- 209 (257)
T ss_dssp CCCSEEEEEECCC-C--CCHHHHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTC---CHHHH--------
T ss_pred cCCCcEEEEEcch-hhcCCCCCCccHHHHHHHHHHHHHHHHHHhcccCcEEEEEEecCccChhhhhccHHHH--------
Confidence 357899999998 6777778889999999999999999999999999999999999999999754321111
Q ss_pred CCHHHHHHHhc-cccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 401 ELPETVARTLV-PRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 401 ~~pe~vA~~~l-~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
.......++ +++..|+|+++++.||+++ .+.++..+..||++
T Consensus 210 --~~~~~~~~~~~r~~~p~dva~~v~~l~s~--~~itG~~i~vdGG~ 252 (257)
T 3tl3_A 210 --ASLGKQVPHPSRLGNPDEYGALAVHIIEN--PMLNGEVIRLDGAI 252 (257)
T ss_dssp --HHHHHTSSSSCSCBCHHHHHHHHHHHHHC--TTCCSCEEEESTTC
T ss_pred --HHHHhcCCCCCCccCHHHHHHHHHHHhcC--CCCCCCEEEECCCc
Confidence 111223345 7889999999999999976 35566666666665
|
| >2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-37 Score=305.45 Aligned_cols=243 Identities=21% Similarity=0.265 Sum_probs=199.1
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
++++|++|||||++|||+++|++|+++|++|++++|++++ ++..+++ . + .++.+|++
T Consensus 3 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~-~~~~~~~--------------------~-~-~~~~~D~~ 59 (256)
T 2d1y_A 3 LFAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEG-KEVAEAI--------------------G-G-AFFQVDLE 59 (256)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTH-HHHHHHH--------------------T-C-EEEECCTT
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhH-HHHHHHh--------------------h-C-CEEEeeCC
Confidence 4789999999999999999999999999999999999876 5443332 1 3 67899999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
|+++++++++++.+++|++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|.|+++ +.|+||++||.
T Consensus 60 ~~~~~~~~~~~~~~~~g~iD~lv~~Ag~~~-~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~-~~g~iv~isS~ 137 (256)
T 2d1y_A 60 DERERVRFVEEAAYALGRVDVLVNNAAIAA-PGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKV-GGGAIVNVASV 137 (256)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCCC-CBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTT-TCEEEEEECCG
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCC-CCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEEccc
Confidence 999999999999999999999999999876 5778899999999999999999999999999999876 57899999998
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhccc
Q 010380 334 GSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPR 413 (512)
Q Consensus 334 ~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~r 413 (512)
++..+.++...|++||+|++.|+++++.|++++||+||+|+||+|+|++...... ..... ...........++++
T Consensus 138 -~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~ 212 (256)
T 2d1y_A 138 -QGLFAEQENAAYNASKGGLVNLTRSLALDLAPLRIRVNAVAPGAIATEAVLEAIA---LSPDP-ERTRRDWEDLHALRR 212 (256)
T ss_dssp -GGTSBCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHC------------CHHHHTTSTTSS
T ss_pred -cccCCCCCChhHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCccCchhhhccc---cccCC-HHHHHHHHhcCCCCC
Confidence 6777888999999999999999999999999999999999999999998532100 00000 000111112245678
Q ss_pred cccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 414 IRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 414 ~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
+..|+|+++++.||+++...+.++..+..+|++
T Consensus 213 ~~~~~dvA~~~~~l~s~~~~~~~G~~~~v~gG~ 245 (256)
T 2d1y_A 213 LGKPEEVAEAVLFLASEKASFITGAILPVDGGM 245 (256)
T ss_dssp CBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred CcCHHHHHHHHHHHhCchhcCCCCCEEEECCCc
Confidence 889999999999999987655555555555554
|
| >3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-37 Score=309.35 Aligned_cols=246 Identities=12% Similarity=0.117 Sum_probs=206.4
Q ss_pred CCCCCCEEEEECCC--ChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEc
Q 010380 173 CKAGPRNVVITGST--RGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIAC 250 (512)
Q Consensus 173 ~~l~gk~vLVTGas--sGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~ 250 (512)
.++++|++|||||+ +|||+++|++|+++|++|++++|+. .++..+++.+. ..++.++.|
T Consensus 22 ~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~--~~~~~~~l~~~-----------------~~~~~~~~~ 82 (280)
T 3nrc_A 22 GFLAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQ--FKDRVEKLCAE-----------------FNPAAVLPC 82 (280)
T ss_dssp CTTTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTT--CHHHHHHHHGG-----------------GCCSEEEEC
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCch--HHHHHHHHHHh-----------------cCCceEEEe
Confidence 35789999999988 8899999999999999999999987 33444444331 235788999
Q ss_pred cCCChhhHHHHHHHHHHHcCCCcccccccccCCC---CCCCcC-CCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCe
Q 010380 251 DVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKG---FKPLLQ-FTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGH 326 (512)
Q Consensus 251 Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~---~~~~~~-~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~ 326 (512)
|++|+++++++++++.+++++||+||||||+... ..++.+ .+.++|++++++|+.++++++++++|.|+++ .|+
T Consensus 83 Dl~~~~~v~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~--~g~ 160 (280)
T 3nrc_A 83 DVISDQEIKDLFVELGKVWDGLDAIVHSIAFAPRDQLEGNFIDCVTREGFSIAHDISAYSFAALAKEGRSMMKNR--NAS 160 (280)
T ss_dssp CTTCHHHHHHHHHHHHHHCSSCCEEEECCCCCCGGGSSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTT--TCE
T ss_pred ecCCHHHHHHHHHHHHHHcCCCCEEEECCccCCCcccCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CCe
Confidence 9999999999999999999999999999998652 144555 8999999999999999999999999999875 689
Q ss_pred EEeecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHH
Q 010380 327 IFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETV 406 (512)
Q Consensus 327 IV~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~v 406 (512)
||++||. ++..+.++...|++||+|+++|+++|+.|++++||+||+|+||+|+|++........ .. .....
T Consensus 161 iv~isS~-~~~~~~~~~~~Y~asKaal~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~--~~------~~~~~ 231 (280)
T 3nrc_A 161 MVALTYI-GAEKAMPSYNTMGVAKASLEATVRYTALALGEDGIKVNAVSAGPIKTLAASGISNFK--KM------LDYNA 231 (280)
T ss_dssp EEEEECG-GGTSCCTTTHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCCCCSGGGGCTTHH--HH------HHHHH
T ss_pred EEEEecc-ccccCCCCchhhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeccccchhhhcCcchH--HH------HHHHH
Confidence 9999998 678888999999999999999999999999999999999999999999875432111 11 12223
Q ss_pred HHHhccccccchhhhhhhhhcCChHHHHHHHHHHhccCcccc
Q 010380 407 ARTLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWFD 448 (512)
Q Consensus 407 A~~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~~ 448 (512)
...+++++..|+|+++.+.||+++...+.++..+..||++..
T Consensus 232 ~~~p~~~~~~pedvA~~v~~l~s~~~~~~tG~~i~vdgG~~~ 273 (280)
T 3nrc_A 232 MVSPLKKNVDIMEVGNTVAFLCSDMATGITGEVVHVDAGYHC 273 (280)
T ss_dssp HHSTTCSCCCHHHHHHHHHHTTSGGGTTCCSCEEEESTTGGG
T ss_pred hcCCCCCCCCHHHHHHHHHHHhCcccCCcCCcEEEECCCccc
Confidence 455678899999999999999999877777777777777643
|
| >3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-37 Score=319.80 Aligned_cols=235 Identities=20% Similarity=0.263 Sum_probs=199.9
Q ss_pred ccCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhh-------HHHHHHHHHHHHhhhhhhcCCCCcccccCc
Q 010380 171 EHCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSES-------VRMTVTELEENLKEGMMAAGGSSKKNLVHA 243 (512)
Q Consensus 171 ~~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~-------l~~~~~el~~~~~~~~~~~g~~~~~~~~g~ 243 (512)
...+++||++|||||++|||+++|++|+++|++|++++|+.++ +++..+++.+ .+.
T Consensus 39 ~~~~l~gk~vlVTGas~GIG~aia~~La~~Ga~Vvl~~r~~~~~~~l~~~l~~~~~~~~~-----------------~g~ 101 (346)
T 3kvo_A 39 NTGRLAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEA-----------------VGG 101 (346)
T ss_dssp CCSTTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHH-----------------TTC
T ss_pred cCCCCCCCEEEEeCCChHHHHHHHHHHHHCCCEEEEEECChhhhhhhHHHHHHHHHHHHh-----------------cCC
Confidence 4567899999999999999999999999999999999999775 4555556544 457
Q ss_pred eEEEEEccCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCC
Q 010380 244 KVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPK 323 (512)
Q Consensus 244 ~v~~v~~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~ 323 (512)
++.++.||++|+++++++++++.+++|+||+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|+|+++ +
T Consensus 102 ~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iDilVnnAG~~~-~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~-~ 179 (346)
T 3kvo_A 102 KALPCIVDVRDEQQISAAVEKAIKKFGGIDILVNNASAIS-LTNTLDTPTKRLDLMMNVNTRGTYLASKACIPYLKKS-K 179 (346)
T ss_dssp EEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCC-CCCTTTCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTC-S
T ss_pred eEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCC-CCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHC-C
Confidence 8999999999999999999999999999999999999987 6788999999999999999999999999999999887 5
Q ss_pred CCeEEeecCCCCCCCC--CCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCc-ccCCcccCCcchhhhhhhhhhc
Q 010380 324 GGHIFNMDGAGSGGSS--TPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGM-VLTDLLLSGSTIQNKQMFNIIC 400 (512)
Q Consensus 324 ~g~IV~vSS~~a~~~~--~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~-V~T~~~~~~~~~~~~~~~~~~~ 400 (512)
.|+||++||. .+..+ .++...|++||+|+++|+++|+.|++ .||+||+|+||+ ++|++.....
T Consensus 180 ~g~IV~iSS~-~~~~~~~~~~~~~Y~aSKaal~~l~~~la~e~~-~gIrvn~v~PG~~i~T~~~~~~~------------ 245 (346)
T 3kvo_A 180 VAHILNISPP-LNLNPVWFKQHCAYTIAKYGMSMYVLGMAEEFK-GEIAVNALWPKTAIHTAAMDMLG------------ 245 (346)
T ss_dssp SCEEEEECCC-CCCCGGGTSSSHHHHHHHHHHHHHHHHHHHHTT-TTCEEEEEECSBCBCCHHHHHHC------------
T ss_pred CCEEEEECCH-HHcCCCCCCCchHHHHHHHHHHHHHHHHHHHhc-CCcEEEEEeCCCccccHHHHhhc------------
Confidence 7899999998 45555 67889999999999999999999999 899999999995 9998752100
Q ss_pred CCHHHHHHHhccccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 401 ELPETVARTLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 401 ~~pe~vA~~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
...+++++..|+++++++.||+++ ..+.++..+ .||++
T Consensus 246 ------~~~~~~r~~~pedvA~~v~~L~s~-~~~itG~~i-vdgg~ 283 (346)
T 3kvo_A 246 ------GPGIESQCRKVDIIADAAYSIFQK-PKSFTGNFV-IDENI 283 (346)
T ss_dssp ------C--CGGGCBCTHHHHHHHHHHHTS-CTTCCSCEE-EHHHH
T ss_pred ------cccccccCCCHHHHHHHHHHHHhc-CCCCCceEE-ECCcE
Confidence 012356778899999999999987 544455444 44443
|
| >3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-37 Score=307.23 Aligned_cols=251 Identities=22% Similarity=0.281 Sum_probs=203.7
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
+++++|++|||||++|||+++|++|+++|++|++++|+.+++++..+++ ..++.++.+|+
T Consensus 8 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~--------------------~~~~~~~~~D~ 67 (263)
T 3ak4_A 8 FDLSGRKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVVAGL--------------------ENGGFAVEVDV 67 (263)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTC--------------------TTCCEEEECCT
T ss_pred cCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH--------------------hcCCeEEEEeC
Confidence 4678999999999999999999999999999999999987765544332 12567899999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|+++++++++++.+++|++|+||||||+.. ..++.+.+.++|++.+++|+.|+++++++++|.|.+++..++||++||
T Consensus 68 ~d~~~v~~~~~~~~~~~g~iD~lv~~Ag~~~-~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS 146 (263)
T 3ak4_A 68 TKRASVDAAMQKAIDALGGFDLLCANAGVST-MRPAVDITDEEWDFNFDVNARGVFLANQIACRHFLASNTKGVIVNTAS 146 (263)
T ss_dssp TCHHHHHHHHHHHHHHHTCCCEEEECCCCCC-CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCcCC-CCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEecc
Confidence 9999999999999999999999999999876 577889999999999999999999999999999988733689999999
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhh--hcCCHHHHHHHh
Q 010380 333 AGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNI--ICELPETVARTL 410 (512)
Q Consensus 333 ~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~--~~~~pe~vA~~~ 410 (512)
. .+..+.++...|++||+|++.|+++++.|++++||+||+|+||+|+|++........... ... ...........+
T Consensus 147 ~-~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p 224 (263)
T 3ak4_A 147 L-AAKVGAPLLAHYSASKFAVFGWTQALAREMAPKNIRVNCVCPGFVKTAMQEREIIWEAEL-RGMTPEAVRAEYVSLTP 224 (263)
T ss_dssp G-GGTSCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBTTHHHHHHHHHHHHH-HTSCHHHHHHHHHHTCT
T ss_pred c-ccccCCCCchhHHHHHHHHHHHHHHHHHHHhHcCeEEEEEecccccChhhhhhccccccc-cccCcHHHHHHHHhcCC
Confidence 7 567778889999999999999999999999999999999999999999853210000000 000 000011122245
Q ss_pred ccccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 411 VPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 411 l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
++++..|+|+++++.||+++...+.++..+..+|++
T Consensus 225 ~~~~~~~~dvA~~v~~l~s~~~~~~tG~~~~vdgG~ 260 (263)
T 3ak4_A 225 LGRIEEPEDVADVVVFLASDAARFMTGQGINVTGGV 260 (263)
T ss_dssp TCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESSSS
T ss_pred CCCCcCHHHHHHHHHHHhCccccCCCCCEEEECcCE
Confidence 678899999999999999987655556566666654
|
| >3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-37 Score=318.33 Aligned_cols=242 Identities=21% Similarity=0.247 Sum_probs=206.9
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcC----------hhhHHHHHHHHHHHHhhhhhhcCCCCcccccCc
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRS----------SESVRMTVTELEENLKEGMMAAGGSSKKNLVHA 243 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~----------~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~ 243 (512)
++++|++|||||++|||+++|++|+++|++|++++|+ .+.+++..+++.+ .+.
T Consensus 24 ~l~gk~vlVTGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~ 86 (322)
T 3qlj_A 24 VVDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITA-----------------AGG 86 (322)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSSBTCTTSHHHHHHHHHHH-----------------TTC
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCcccccccccccHHHHHHHHHHHHh-----------------cCC
Confidence 4789999999999999999999999999999999998 6777777777765 456
Q ss_pred eEEEEEccCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCC-
Q 010380 244 KVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQP- 322 (512)
Q Consensus 244 ~v~~v~~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~- 322 (512)
++.++.||++|+++++++++++.+++|+||+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|+|.+..
T Consensus 87 ~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lv~nAg~~~-~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~ 165 (322)
T 3qlj_A 87 EAVADGSNVADWDQAAGLIQTAVETFGGLDVLVNNAGIVR-DRMIANTSEEEFDAVIAVHLKGHFATMRHAAAYWRGLSK 165 (322)
T ss_dssp EEEEECCCTTSHHHHHHHHHHHHHHHSCCCEEECCCCCCC-CCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCC-CCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHccc
Confidence 8999999999999999999999999999999999999987 57889999999999999999999999999999997532
Q ss_pred ----CCCeEEeecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhh
Q 010380 323 ----KGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNI 398 (512)
Q Consensus 323 ----~~g~IV~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~ 398 (512)
.+|+||++||. ++..+.++...|++||+|+++|+++|+.|++++||+||+|+|| +.|+|..........
T Consensus 166 ~~~~~~g~IV~isS~-~~~~~~~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG-~~t~~~~~~~~~~~~----- 238 (322)
T 3qlj_A 166 AGKAVDGRIINTSSG-AGLQGSVGQGNYSAAKAGIATLTLVGAAEMGRYGVTVNAIAPS-ARTRMTETVFAEMMA----- 238 (322)
T ss_dssp TTCCCCEEEEEECCH-HHHHCBTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-TTSCCSCCSCCC--------
T ss_pred cCCCCCcEEEEEcCH-HHccCCCCCccHHHHHHHHHHHHHHHHHHhcccCcEEEEecCC-CCCccchhhhhhhhh-----
Confidence 24799999997 5677788899999999999999999999999999999999999 999987543221100
Q ss_pred hcCCHHHHHHHhccccccchhhhhhhhhcCChHHHHHHHHHHhccCcccc
Q 010380 399 ICELPETVARTLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWFD 448 (512)
Q Consensus 399 ~~~~pe~vA~~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~~ 448 (512)
.+ ....+...|+|++.++.||+++...+.++..+..||++..
T Consensus 239 ---~~-----~~~~~~~~pedva~~v~~L~s~~~~~itG~~i~vdGG~~~ 280 (322)
T 3qlj_A 239 ---TQ-----DQDFDAMAPENVSPLVVWLGSAEARDVTGKVFEVEGGKIR 280 (322)
T ss_dssp -------------CCTTCGGGTHHHHHHHTSGGGGGCCSCEEEEETTEEE
T ss_pred ---cc-----ccccCCCCHHHHHHHHHHHhCccccCCCCCEEEECCCccc
Confidence 00 1112345799999999999999888888888888877643
|
| >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-37 Score=307.35 Aligned_cols=236 Identities=23% Similarity=0.329 Sum_probs=202.1
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
++++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++. .++.++.+|++
T Consensus 4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~--------------------~~~~~~~~D~~ 63 (260)
T 1nff_A 4 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELA--------------------DAARYVHLDVT 63 (260)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTG--------------------GGEEEEECCTT
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhh--------------------cCceEEEecCC
Confidence 4789999999999999999999999999999999999887766554431 24778999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
|+++++++++++.+++|++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|.|+++ +.|+||++||.
T Consensus 64 ~~~~v~~~~~~~~~~~g~iD~lv~~Ag~~~-~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv~isS~ 141 (260)
T 1nff_A 64 QPAQWKAAVDTAVTAFGGLHVLVNNAGILN-IGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEA-GRGSIINISSI 141 (260)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCCC-CBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCG
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCC-CCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCCEEEEEeeh
Confidence 999999999999999999999999999876 5778899999999999999999999999999999876 56899999998
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhccc
Q 010380 334 GSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPR 413 (512)
Q Consensus 334 ~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~r 413 (512)
++..+.++...|++||++++.|+++++.|++++||+||+|+||+|.|++.. .. ...+ ...++++
T Consensus 142 -~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~-~~---~~~~-----------~~~~~~~ 205 (260)
T 1nff_A 142 -EGLAGTVACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMTD-WV---PEDI-----------FQTALGR 205 (260)
T ss_dssp -GGTSCCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSGGGT-TS---CTTC-----------SCCSSSS
T ss_pred -hhcCCCCCchhHHHHHHHHHHHHHHHHHHhCccCcEEEEEEeCCCCCCccc-cc---hhhH-----------HhCccCC
Confidence 667778889999999999999999999999999999999999999999853 10 0000 0234567
Q ss_pred cccchhhhhhhhhcCChHHHHHHHHHHhccCccc
Q 010380 414 IRVVKGSGKAINYLTPPRILLALVTAWLRRGRWF 447 (512)
Q Consensus 414 ~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~ 447 (512)
+..|+|+++.+.||+++...+.++..+..+|++.
T Consensus 206 ~~~~~dvA~~v~~l~s~~~~~~~G~~~~v~gG~~ 239 (260)
T 1nff_A 206 AAEPVEVSNLVVYLASDESSYSTGAEFVVDGGTV 239 (260)
T ss_dssp CBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred CCCHHHHHHHHHHHhCccccCCcCCEEEECCCee
Confidence 8889999999999998876555566666666653
|
| >1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-38 Score=312.28 Aligned_cols=246 Identities=24% Similarity=0.326 Sum_probs=202.5
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
.++++|++|||||++|||+++|++|+++|++|++++|++++++++.+++ .++.++.||+
T Consensus 5 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---------------------~~~~~~~~Dv 63 (270)
T 1yde_A 5 TRYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQEL---------------------PGAVFILCDV 63 (270)
T ss_dssp CTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC---------------------TTEEEEECCT
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---------------------cCCeEEEcCC
Confidence 3578999999999999999999999999999999999988766544332 1367899999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|+++++++++++.+++|++|+||||||+.....++.+.+.++|++++++|+.|+++++++++|+|+++ .|+||++||
T Consensus 64 ~d~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~--~g~iv~isS 141 (270)
T 1yde_A 64 TQEDDVKTLVSETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKS--QGNVINISS 141 (270)
T ss_dssp TSHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEECC
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHC--CCEEEEEcC
Confidence 999999999999999999999999999987534678899999999999999999999999999999864 589999998
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhcc
Q 010380 333 AGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVP 412 (512)
Q Consensus 333 ~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~ 412 (512)
. .+..+.++...|++||+|+++|+++++.|++++||+||+|+||+|.|++.......... .... ..+.....+++
T Consensus 142 ~-~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~Pg~v~t~~~~~~~~~~~~-~~~~---~~~~~~~~p~~ 216 (270)
T 1yde_A 142 L-VGAIGQAQAVPYVATKGAVTAMTKALALDESPYGVRVNCISPGNIWTPLWEELAALMPD-PRAS---IREGMLAQPLG 216 (270)
T ss_dssp H-HHHHCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHHHHTTSSS-HHHH---HHHHHHTSTTS
T ss_pred c-cccCCCCCCcccHHHHHHHHHHHHHHHHHhhhhCcEEEEEEeCccccchhhhhhhcccc-hHHH---HHHHhhcCCCC
Confidence 7 45667788899999999999999999999999999999999999999985321000000 0000 01112335678
Q ss_pred ccccchhhhhhhhhcCChHHHHHHHHHHhccCccc
Q 010380 413 RIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWF 447 (512)
Q Consensus 413 r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~ 447 (512)
++..|+|++..+.||+++ ..+.++..+..||++.
T Consensus 217 r~~~p~dva~~v~~L~s~-~~~itG~~i~vdGG~~ 250 (270)
T 1yde_A 217 RMGQPAEVGAAAVFLASE-ANFCTGIELLVTGGAE 250 (270)
T ss_dssp SCBCHHHHHHHHHHHHHH-CTTCCSCEEEESTTTT
T ss_pred CCcCHHHHHHHHHHHccc-CCCcCCCEEEECCCee
Confidence 899999999999999987 4566676777777763
|
| >2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-37 Score=303.75 Aligned_cols=242 Identities=21% Similarity=0.235 Sum_probs=187.3
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
|++++|++|||||++|||+++|++|+++|++|++++|+.+. .+ .+ +.++.+|+
T Consensus 3 m~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~--------~~-----------------~~--~~~~~~D~ 55 (250)
T 2fwm_X 3 MDFSGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFTQ--------EQ-----------------YP--FATEVMDV 55 (250)
T ss_dssp CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCCCS--------SC-----------------CS--SEEEECCT
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCchhh--------hc-----------------CC--ceEEEcCC
Confidence 56889999999999999999999999999999999998641 00 12 67789999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|+++++++++++.++++++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|.|+++ +.|+||++||
T Consensus 56 ~d~~~~~~~~~~~~~~~g~id~lv~~Ag~~~-~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~-~~g~iv~isS 133 (250)
T 2fwm_X 56 ADAAQVAQVCQRLLAETERLDALVNAAGILR-MGATDQLSKEDWQQTFAVNVGGAFNLFQQTMNQFRRQ-RGGAIVTVAS 133 (250)
T ss_dssp TCHHHHHHHHHHHHHHCSCCCEEEECCCCCC-CCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEECC
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCcCC-CCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhc-CCCEEEEECc
Confidence 9999999999999999999999999999876 5788899999999999999999999999999999876 5789999999
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhh-hhcC-CHHHHHHHh
Q 010380 333 AGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFN-IICE-LPETVARTL 410 (512)
Q Consensus 333 ~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~-~~~~-~pe~vA~~~ 410 (512)
. ++..+.++...|++||++++.|+++++.|++++||+||+|+||+|+|++....... ..... .... ........+
T Consensus 134 ~-~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~--~~~~~~~~~~~~~~~~~~~p 210 (250)
T 2fwm_X 134 D-AAHTPRIGMSAYGASKAALKSLALSVGLELAGSGVRCNVVSPGSTDTDMQRTLWVS--DDAEEQRIRGFGEQFKLGIP 210 (250)
T ss_dssp G-GGTSCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC---------------------------------
T ss_pred h-hhCCCCCCCchHHHHHHHHHHHHHHHHHHhCccCCEEEEEECCcccCccccccccC--hhHHHHHHhhhhhcccccCC
Confidence 8 67778889999999999999999999999999999999999999999986432110 00000 0000 000001345
Q ss_pred ccccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 411 VPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 411 l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
++++..|+|+++++.||+++...+.++..+..+|++
T Consensus 211 ~~~~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdGG~ 246 (250)
T 2fwm_X 211 LGKIARPQEIANTILFLASDLASHITLQDIVVDGGS 246 (250)
T ss_dssp -----CHHHHHHHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred CCCCcCHHHHHHHHHHHhCccccCCCCCEEEECCCc
Confidence 678899999999999999987666666666666654
|
| >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-38 Score=307.59 Aligned_cols=240 Identities=15% Similarity=0.202 Sum_probs=203.5
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
++++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++ +.++.++.+|++
T Consensus 3 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~--------------------~~~~~~~~~D~~ 62 (253)
T 1hxh_A 3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAEL--------------------GERSMFVRHDVS 62 (253)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH--------------------CTTEEEECCCTT
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc--------------------CCceEEEEccCC
Confidence 578999999999999999999999999999999999988776655443 246788999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
|+++++++++++.+++|++|+||||||+.. ..++.+.+.++|++++++|+.++++++++++|.|+++ + |+||++||.
T Consensus 63 ~~~~v~~~~~~~~~~~g~id~lv~~Ag~~~-~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~-~-g~iv~isS~ 139 (253)
T 1hxh_A 63 SEADWTLVMAAVQRRLGTLNVLVNNAGILL-PGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKET-G-GSIINMASV 139 (253)
T ss_dssp CHHHHHHHHHHHHHHHCSCCEEEECCCCCC-CBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTT-C-EEEEEECCG
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCC-CCCcccCCHHHHHHHHHhhcHHHHHHHHHHHHHHHHc-C-CEEEEEcch
Confidence 999999999999999999999999999876 5788899999999999999999999999999999876 3 999999998
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCC--CeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHH-HHH---
Q 010380 334 GSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRS--KVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPE-TVA--- 407 (512)
Q Consensus 334 ~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~--GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe-~vA--- 407 (512)
++..+.++...|++||++++.|+++++.|++++ ||+||+|+||+|.|++....... .. ..+ ...
T Consensus 140 -~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~---~~------~~~~~~~~~~ 209 (253)
T 1hxh_A 140 -SSWLPIEQYAGYSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIYTPMMQASLPK---GV------SKEMVLHDPK 209 (253)
T ss_dssp -GGTSCCTTBHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESEECCHHHHHHSCT---TC------CHHHHBCBTT
T ss_pred -hhcCCCCCCccHHHHHHHHHHHHHHHHHHhhhcCCCeEEEEEEeCCccCchhhhccch---hh------hHHHHhhhhc
Confidence 677788899999999999999999999999888 99999999999999985321000 00 000 001
Q ss_pred HHhccccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 408 RTLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 408 ~~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
..+++++..|+|+++++.||+++...+.++..+..+|++
T Consensus 210 ~~p~~~~~~~~dvA~~~~~l~s~~~~~~tG~~~~vdgG~ 248 (253)
T 1hxh_A 210 LNRAGRAYMPERIAQLVLFLASDESSVMSGSELHADNSI 248 (253)
T ss_dssp TBTTCCEECHHHHHHHHHHHHSGGGTTCCSCEEEESSSC
T ss_pred cCccCCCCCHHHHHHHHHHHcCccccCCCCcEEEECCCc
Confidence 234677889999999999999988766666666666665
|
| >4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-37 Score=307.23 Aligned_cols=243 Identities=26% Similarity=0.363 Sum_probs=194.6
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEE-EcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 175 AGPRNVVITGSTRGLGKALAREFLLSGDRVVVA-SRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 175 l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~-~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
.++|++|||||++|||+++|++|+++|++|+++ .|+.+.++++.+++.+ .+.++.++.+|++
T Consensus 24 ~~~k~vlITGas~gIG~a~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~Dl~ 86 (272)
T 4e3z_A 24 SDTPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREAADAVVAAITE-----------------SGGEAVAIPGDVG 86 (272)
T ss_dssp CCSCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH-----------------TTCEEEEEECCTT
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCChhHHHHHHHHHHh-----------------cCCcEEEEEcCCC
Confidence 468999999999999999999999999999887 7788877777777655 4568999999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhC--CCCCeEEeec
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQ--PKGGHIFNMD 331 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~--~~~g~IV~vS 331 (512)
|+++++++++++.++++++|+||||||+.....++.+.+.++|++++++|+.|+++++++++|.|.+. ++.|+||++|
T Consensus 87 ~~~~v~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~is 166 (272)
T 4e3z_A 87 NAADIAAMFSAVDRQFGRLDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSILCAAEAVRRMSRLYSGQGGAIVNVS 166 (272)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEEC
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCCCCEEEEEc
Confidence 99999999999999999999999999997644778899999999999999999999999999999763 3468999999
Q ss_pred CCCCCCCCCC-CcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHh
Q 010380 332 GAGSGGSSTP-LTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTL 410 (512)
Q Consensus 332 S~~a~~~~~p-~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~ 410 (512)
|. ++..+.+ ....|++||+|++.|+++|+.|++++||+|++|+||+|+|++........ . ..+.....+
T Consensus 167 S~-~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~---~------~~~~~~~~~ 236 (272)
T 4e3z_A 167 SM-AAILGSATQYVDYAASKAAIDTFTIGLAREVAAEGIRVNAVRPGIIETDLHASGGLPD---R------AREMAPSVP 236 (272)
T ss_dssp CT-HHHHCCTTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC---------------------------CCT
T ss_pred ch-HhccCCCCCcchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCCCcCCcccccCChH---H------HHHHhhcCC
Confidence 97 4444444 67889999999999999999999999999999999999999865421110 0 011122345
Q ss_pred ccccccchhhhhhhhhcCChHHHHHHHHHHhccC
Q 010380 411 VPRIRVVKGSGKAINYLTPPRILLALVTAWLRRG 444 (512)
Q Consensus 411 l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g 444 (512)
+++...|+|+++++.||+++...+.++..+..+|
T Consensus 237 ~~~~~~~edvA~~i~~l~s~~~~~~tG~~i~vdg 270 (272)
T 4e3z_A 237 MQRAGMPEEVADAILYLLSPSASYVTGSILNVSG 270 (272)
T ss_dssp TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred cCCCcCHHHHHHHHHHHhCCccccccCCEEeecC
Confidence 6778889999999999999876544444444433
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-37 Score=297.86 Aligned_cols=222 Identities=23% Similarity=0.298 Sum_probs=188.8
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCCh
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEP 255 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~ 255 (512)
++|++|||||++|||+++|++|+++|++|++++|+.+++++..+++.+. .+.++.++.||++|+
T Consensus 1 ~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~----------------~~~~~~~~~~D~~~~ 64 (235)
T 3l77_A 1 EMKVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQE----------------QGVEVFYHHLDVSKA 64 (235)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH----------------HCCCEEEEECCTTCH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhh----------------cCCeEEEEEeccCCH
Confidence 4789999999999999999999999999999999999998888887642 346899999999999
Q ss_pred hhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCC
Q 010380 256 ADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGS 335 (512)
Q Consensus 256 ~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a 335 (512)
++++++++++.+++|++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|.|.++ ++++|+++|. .
T Consensus 65 ~~v~~~~~~~~~~~g~id~li~~Ag~~~-~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~--~~~ii~~sS~-~ 140 (235)
T 3l77_A 65 ESVEEFSKKVLERFGDVDVVVANAGLGY-FKRLEELSEEEFHEMIEVNLLGVWRTLKAFLDSLKRT--GGLALVTTSD-V 140 (235)
T ss_dssp HHHHHHCC-HHHHHSSCSEEEECCCCCC-CCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEECCG-G
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCcccc-ccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCcEEEEecc-h
Confidence 9999999999999999999999999987 6889999999999999999999999999999999653 5788888887 5
Q ss_pred CCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhccccc
Q 010380 336 GGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPRIR 415 (512)
Q Consensus 336 ~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~r~~ 415 (512)
+..+.++...|++||+|+++|+++++.+ ..||+||+|+||+|+|+|......... ..+..
T Consensus 141 ~~~~~~~~~~Y~~sKaa~~~~~~~l~~~--~~~i~v~~v~PG~v~T~~~~~~~~~~~------------------~~~~~ 200 (235)
T 3l77_A 141 SARLIPYGGGYVSTKWAARALVRTFQIE--NPDVRFFELRPGAVDTYFGGSKPGKPK------------------EKGYL 200 (235)
T ss_dssp GSSCCTTCHHHHHHHHHHHHHHHHHHHH--CTTSEEEEEEECSBSSSTTTCCSCCCG------------------GGTCB
T ss_pred hcccCCCcchHHHHHHHHHHHHHHHhhc--CCCeEEEEEeCCccccccccccCCccc------------------ccCCC
Confidence 6677888999999999999999999544 679999999999999999754322110 01456
Q ss_pred cchhhhhhhhhcCChHHHHHHH
Q 010380 416 VVKGSGKAINYLTPPRILLALV 437 (512)
Q Consensus 416 ~~~~va~~v~~L~s~~~~~~~~ 437 (512)
.|+|+++++.||+++.....++
T Consensus 201 ~p~dva~~v~~l~~~~~~~~~~ 222 (235)
T 3l77_A 201 KPDEIAEAVRCLLKLPKDVRVE 222 (235)
T ss_dssp CHHHHHHHHHHHHTSCTTCCCC
T ss_pred CHHHHHHHHHHHHcCCCCCccc
Confidence 7788888888888776543333
|
| >2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-37 Score=303.80 Aligned_cols=234 Identities=21% Similarity=0.302 Sum_probs=187.9
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
++++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+ .+.++.++.+|++
T Consensus 2 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-----------------~~~~~~~~~~Dv~ 64 (260)
T 2qq5_A 2 PMNGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQS-----------------LGGQCVPVVCDSS 64 (260)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-----------------HSSEEEEEECCTT
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHH-----------------cCCceEEEECCCC
Confidence 46799999999999999999999999999999999999888887777754 2457889999999
Q ss_pred ChhhHHHHHHHHHHH-cCCCcccccccc--cC----CCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCe
Q 010380 254 EPADVQKLSNFAVNE-FGSIDIWINNAG--TN----KGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGH 326 (512)
Q Consensus 254 d~~sv~~~~~~i~~~-~g~IDvLInnAG--~~----~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~ 326 (512)
|+++++++++++.++ +|++|+|||||| +. ....++.+.+.++|++++++|+.++++++++++|.|+++ +.|+
T Consensus 65 ~~~~v~~~~~~~~~~~~g~id~lvnnAg~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~g~ 143 (260)
T 2qq5_A 65 QESEVRSLFEQVDREQQGRLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINNVGLRGHYFCSVYGARLMVPA-GQGL 143 (260)
T ss_dssp SHHHHHHHHHHHHHHHTTCCCEEEECCCTTHHHHHHTTTCCTTTSCTTHHHHHHTTTTHHHHHHHHHHHHHHGGG-TCCE
T ss_pred CHHHHHHHHHHHHHhcCCCceEEEECCccccccccccCCCccccCCHHHHHHHHhhcchhHHHHHHHHHHHHhhc-CCcE
Confidence 999999999999886 899999999995 32 114567889999999999999999999999999999876 5789
Q ss_pred EEeecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHH
Q 010380 327 IFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETV 406 (512)
Q Consensus 327 IV~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~v 406 (512)
||++||. ++..+ ++...|++||+|+++|+++++.|++++||+||+|+||+|+|+|............... ...
T Consensus 144 iv~isS~-~~~~~-~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~-----~~~ 216 (260)
T 2qq5_A 144 IVVISSP-GSLQY-MFNVPYGVGKAACDKLAADCAHELRRHGVSCVSLWPGIVQTELLKEHMAKEEVLQDPV-----LKQ 216 (260)
T ss_dssp EEEECCG-GGTSC-CSSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCCSCTTTC----------------------
T ss_pred EEEEcCh-hhcCC-CCCCchHHHHHHHHHHHHHHHHHhccCCeEEEEEecCccccHHHHHhhccccccchhH-----HHH
Confidence 9999997 44443 3468899999999999999999999999999999999999998643211100000000 000
Q ss_pred HHHhccccccchhhhhhhhhcCChHH
Q 010380 407 ARTLVPRIRVVKGSGKAINYLTPPRI 432 (512)
Q Consensus 407 A~~~l~r~~~~~~va~~v~~L~s~~~ 432 (512)
...++++...|+|++.++.||+++..
T Consensus 217 ~~~~~~~~~~pe~va~~v~~l~s~~~ 242 (260)
T 2qq5_A 217 FKSAFSSAETTELSGKCVVALATDPN 242 (260)
T ss_dssp -----CHHHHHHHHHHHHHHHHTCTT
T ss_pred HHhhhccCCCHHHHHHHHHHHhcCcc
Confidence 12345667889999999999998764
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-37 Score=302.11 Aligned_cols=241 Identities=20% Similarity=0.311 Sum_probs=186.6
Q ss_pred ccccCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEE
Q 010380 169 LEEHCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGI 248 (512)
Q Consensus 169 ~~~~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v 248 (512)
..+..++++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++ ..++.++
T Consensus 6 ~~~~~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~--------------------~~~~~~~ 65 (249)
T 3f9i_A 6 HHHMIDLTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNAL--------------------KDNYTIE 65 (249)
T ss_dssp ---CCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH--------------------CSSEEEE
T ss_pred ccccccCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh--------------------ccCccEE
Confidence 34466789999999999999999999999999999999999998877665554 2367889
Q ss_pred EccCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEE
Q 010380 249 ACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIF 328 (512)
Q Consensus 249 ~~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV 328 (512)
.+|++|.+++++++++ ++++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|.|.++ +.|+||
T Consensus 66 ~~D~~~~~~~~~~~~~----~~~id~li~~Ag~~~-~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~g~iv 139 (249)
T 3f9i_A 66 VCNLANKEECSNLISK----TSNLDILVCNAGITS-DTLAIRMKDQDFDKVIDINLKANFILNREAIKKMIQK-RYGRII 139 (249)
T ss_dssp ECCTTSHHHHHHHHHT----CSCCSEEEECCC--------------CHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEE
T ss_pred EcCCCCHHHHHHHHHh----cCCCCEEEECCCCCC-CCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCcEEE
Confidence 9999999998887654 478999999999987 5677888999999999999999999999999999876 578999
Q ss_pred eecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHH
Q 010380 329 NMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVAR 408 (512)
Q Consensus 329 ~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~ 408 (512)
++||. ++..+.++...|++||+|+++|+++++.|++++||+||+|+||+|+|++........ .......
T Consensus 140 ~isS~-~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~----------~~~~~~~ 208 (249)
T 3f9i_A 140 NISSI-VGIAGNPGQANYCASKAGLIGMTKSLSYEVATRGITVNAVAPGFIKSDMTDKLNEKQ----------REAIVQK 208 (249)
T ss_dssp EECCC-CC--CCSCSHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBC------CCHHH----------HHHHHHH
T ss_pred EEccH-HhccCCCCCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCccccCcccccCHHH----------HHHHHhc
Confidence 99998 677888999999999999999999999999999999999999999999875432111 1122344
Q ss_pred HhccccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 409 TLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 409 ~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
.+++++..|+|+++++.||+++...+.++..+..+|++
T Consensus 209 ~~~~~~~~~~dva~~~~~l~s~~~~~~tG~~~~vdgG~ 246 (249)
T 3f9i_A 209 IPLGTYGIPEDVAYAVAFLASNNASYITGQTLHVNGGM 246 (249)
T ss_dssp CTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTS
T ss_pred CCCCCCcCHHHHHHHHHHHcCCccCCccCcEEEECCCE
Confidence 56788899999999999999988766666666666655
|
| >2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-37 Score=303.99 Aligned_cols=244 Identities=17% Similarity=0.171 Sum_probs=201.3
Q ss_pred CCCCCCEEEEECCC--ChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEc
Q 010380 173 CKAGPRNVVITGST--RGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIAC 250 (512)
Q Consensus 173 ~~l~gk~vLVTGas--sGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~ 250 (512)
+++++|++|||||+ +|||+++|++|+++|++|++++|+++ .++..+++.+. . ..+.++.+
T Consensus 4 ~~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~-~~~~~~~l~~~----------------~-~~~~~~~~ 65 (261)
T 2wyu_A 4 VDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAER-LRPEAEKLAEA----------------L-GGALLFRA 65 (261)
T ss_dssp ECCTTCEEEEESCCSSSSHHHHHHHHHHHHTCEEEEEESCGG-GHHHHHHHHHH----------------T-TCCEEEEC
T ss_pred cCCCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHHHHHHh----------------c-CCcEEEEC
Confidence 35789999999999 99999999999999999999999975 44444555432 1 23678999
Q ss_pred cCCChhhHHHHHHHHHHHcCCCcccccccccCCC---CCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeE
Q 010380 251 DVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKG---FKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHI 327 (512)
Q Consensus 251 Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~---~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~I 327 (512)
|++|+++++++++++.+++|++|+||||||+... ..++.+.+.++|++++++|+.|+++++++++|.|++ +|+|
T Consensus 66 D~~~~~~v~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~---~g~i 142 (261)
T 2wyu_A 66 DVTQDEELDALFAGVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLRE---GGGI 142 (261)
T ss_dssp CTTCHHHHHHHHHHHHHHHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEE---EEEE
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHhcc---CCEE
Confidence 9999999999999999999999999999998642 156788999999999999999999999999999964 4899
Q ss_pred EeecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHH
Q 010380 328 FNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVA 407 (512)
Q Consensus 328 V~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA 407 (512)
|++||. ++..+.++...|++||+|++.|+++++.|++++||+||+|+||+|+|++...... ..... .....
T Consensus 143 v~isS~-~~~~~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~--~~~~~------~~~~~ 213 (261)
T 2wyu_A 143 VTLTYY-ASEKVVPKYNVMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAARSIPG--FTKMY------DRVAQ 213 (261)
T ss_dssp EEEECG-GGTSBCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCCCCTGGGGCTT--HHHHH------HHHHH
T ss_pred EEEecc-cccCCCCCchHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEeeCCCcCchhhhccc--cHHHH------HHHHh
Confidence 999997 5677788899999999999999999999999999999999999999998643211 00000 11123
Q ss_pred HHhccccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 408 RTLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 408 ~~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
..+++++..|+|+++++.||+++...+.++..+..+|++
T Consensus 214 ~~p~~~~~~~~dva~~v~~l~s~~~~~~tG~~~~vdgG~ 252 (261)
T 2wyu_A 214 TAPLRRNITQEEVGNLGLFLLSPLASGITGEVVYVDAGY 252 (261)
T ss_dssp HSTTSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred cCCCCCCCCHHHHHHHHHHHcChhhcCCCCCEEEECCCc
Confidence 456778899999999999999987666566666666665
|
| >3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-37 Score=311.10 Aligned_cols=260 Identities=19% Similarity=0.204 Sum_probs=202.0
Q ss_pred ccccCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEE
Q 010380 169 LEEHCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGI 248 (512)
Q Consensus 169 ~~~~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v 248 (512)
..+.++++||++|||||++|||+++|++|+++|++|++++|+.++++++.+++ +.++.++
T Consensus 8 ~~~~~~l~gk~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~--------------------~~~~~~~ 67 (291)
T 3rd5_A 8 AADLPSFAQRTVVITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAARTM--------------------AGQVEVR 67 (291)
T ss_dssp GGGCCCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTS--------------------SSEEEEE
T ss_pred hhhccCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh--------------------cCCeeEE
Confidence 34456789999999999999999999999999999999999988776554432 4579999
Q ss_pred EccCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEE
Q 010380 249 ACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIF 328 (512)
Q Consensus 249 ~~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV 328 (512)
.+|++|+++++++++++ +++|+||||||+.. +..+.+.++|++++++|+.|+++++++++|.|.+ +||
T Consensus 68 ~~Dl~d~~~v~~~~~~~----~~iD~lv~nAg~~~---~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~-----riv 135 (291)
T 3rd5_A 68 ELDLQDLSSVRRFADGV----SGADVLINNAGIMA---VPYALTVDGFESQIGTNHLGHFALTNLLLPRLTD-----RVV 135 (291)
T ss_dssp ECCTTCHHHHHHHHHTC----CCEEEEEECCCCCS---CCCCBCTTSCBHHHHHHTHHHHHHHHHHGGGEEE-----EEE
T ss_pred EcCCCCHHHHHHHHHhc----CCCCEEEECCcCCC---CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hee
Confidence 99999999999988765 78999999999864 3466788999999999999999999999999864 799
Q ss_pred eecCCCCCCCC-------------CCCcchhhHHHHHHHHHHHHHHHHhCCCC--eEEEEEeCCcccCCcccCCcchhhh
Q 010380 329 NMDGAGSGGSS-------------TPLTAVYGSTKCGLRQLQASLFKESKRSK--VGVHTASPGMVLTDLLLSGSTIQNK 393 (512)
Q Consensus 329 ~vSS~~a~~~~-------------~p~~~~Y~aSKaAl~~l~~sLa~El~~~G--IrVn~V~PG~V~T~~~~~~~~~~~~ 393 (512)
++||. ++..+ .++...|++||+|++.|+++|+.|+++.| |+||+|+||+|+|+|........
T Consensus 136 ~isS~-~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~g~~i~v~~v~PG~v~T~~~~~~~~~~-- 212 (291)
T 3rd5_A 136 TVSSM-AHWPGRINLEDLNWRSRRYSPWLAYSQSKLANLLFTSELQRRLTAAGSPLRALAAHPGYSHTNLQGASGRKL-- 212 (291)
T ss_dssp EECCG-GGTTCCCCSSCTTCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCSGGGSCC----------
T ss_pred Eeech-hhccCCCCcccccccccCCCCcchHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEeeCCCCccccccccchHH--
Confidence 99997 33322 34567899999999999999999999877 99999999999999975432111
Q ss_pred hhhhhhcCCHHHHHHHhcccccc-chhhhhhhhhcCChHHHHHHHHHHhccCccccc------chhhhhHHHHHHHHHHH
Q 010380 394 QMFNIICELPETVARTLVPRIRV-VKGSGKAINYLTPPRILLALVTAWLRRGRWFDD------QGRALYAAEADRIRNWA 466 (512)
Q Consensus 394 ~~~~~~~~~pe~vA~~~l~r~~~-~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~rl~~w~ 466 (512)
.+...+.+.+++.. |++++.++.||+++. +.++..+..+|++... ...+.+...++++|+|+
T Consensus 213 ---------~~~~~~~~~~~~~~~~~~~A~~~~~l~~~~--~~~G~~~~vdgG~~~~~~~~~~~~~~~~~~~~~~lw~~~ 281 (291)
T 3rd5_A 213 ---------GDALMSAATRVVATDADFGARQTLYAASQD--LPGDSFVGPRFGYLGRTQPVGRSRRAKDAGMAAALWALS 281 (291)
T ss_dssp ---------------------CHHHHHHHHHHHHHHHSC--CCTTCEEEETTSSSSCEEECCCCTGGGCHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHhCCHHHHHHHHHHHHcCC--CCCCceeCCcccccCccccCCCCcccCCHHHHHHHHHHH
Confidence 11222334455554 899999999999874 5677777778776543 23556778889999999
Q ss_pred HHcccCCh
Q 010380 467 ENRARFSF 474 (512)
Q Consensus 467 ~~~~~~~~ 474 (512)
++.....+
T Consensus 282 ~~~~~~~~ 289 (291)
T 3rd5_A 282 EQLTKTEF 289 (291)
T ss_dssp HHHHTCCC
T ss_pred HHHHcccc
Confidence 88655443
|
| >2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-37 Score=305.04 Aligned_cols=235 Identities=24% Similarity=0.360 Sum_probs=189.2
Q ss_pred ccCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEc
Q 010380 171 EHCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIAC 250 (512)
Q Consensus 171 ~~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~ 250 (512)
...++.+|++|||||++|||+++|++|+++|++|++++|+.+++ ..+.++.+
T Consensus 15 ~~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~----------------------------~~~~~~~~ 66 (253)
T 2nm0_A 15 VPRSHMSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSGEPP----------------------------EGFLAVKC 66 (253)
T ss_dssp -----CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSCCC----------------------------TTSEEEEC
T ss_pred CccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHhh----------------------------ccceEEEe
Confidence 34568899999999999999999999999999999999986542 12567899
Q ss_pred cCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEee
Q 010380 251 DVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNM 330 (512)
Q Consensus 251 Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~v 330 (512)
|++|+++++++++++.++++++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|.|+++ +.|+||++
T Consensus 67 Dl~d~~~v~~~~~~~~~~~g~iD~lv~nAg~~~-~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~-~~g~iv~i 144 (253)
T 2nm0_A 67 DITDTEQVEQAYKEIEETHGPVEVLIANAGVTK-DQLLMRMSEEDFTSVVETNLTGTFRVVKRANRAMLRA-KKGRVVLI 144 (253)
T ss_dssp CTTSHHHHHHHHHHHHHHTCSCSEEEEECSCCT-TTC---CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHH-TCEEEEEE
T ss_pred cCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCC-CCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCEEEEE
Confidence 999999999999999999999999999999876 5778889999999999999999999999999999876 57899999
Q ss_pred cCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHh
Q 010380 331 DGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTL 410 (512)
Q Consensus 331 SS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~ 410 (512)
||. ++..+.++...|++||+|++.|+++++.|+++.||+||+|+||+|+|++......... .......+
T Consensus 145 sS~-~~~~~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~----------~~~~~~~p 213 (253)
T 2nm0_A 145 SSV-VGLLGSAGQANYAASKAGLVGFARSLARELGSRNITFNVVAPGFVDTDMTKVLTDEQR----------ANIVSQVP 213 (253)
T ss_dssp CCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEECSBCC---------CH----------HHHHTTCT
T ss_pred Cch-hhCCCCCCcHHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCcCcCcchhhcCHHHH----------HHHHhcCC
Confidence 997 5666667788999999999999999999999999999999999999998643111000 11112235
Q ss_pred ccccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 411 VPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 411 l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
++++..|+|+++.+.||+++...+.++..+..+|++
T Consensus 214 ~~~~~~p~dvA~~i~~l~s~~~~~~tG~~i~vdGG~ 249 (253)
T 2nm0_A 214 LGRYARPEEIAATVRFLASDDASYITGAVIPVDGGL 249 (253)
T ss_dssp TCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred CCCCcCHHHHHHHHHHHhCccccCCcCcEEEECCcc
Confidence 677889999999999999987666666666666654
|
| >1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-37 Score=303.20 Aligned_cols=242 Identities=14% Similarity=0.177 Sum_probs=199.6
Q ss_pred CCCCEEEEECCC--ChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 175 AGPRNVVITGST--RGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 175 l~gk~vLVTGas--sGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
+++|++|||||+ +|||+++|++|+++|++|++++|+. +.++..+++.+. . ....++.+|+
T Consensus 7 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~-~~~~~~~~l~~~----------------~-~~~~~~~~D~ 68 (265)
T 1qsg_A 7 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND-KLKGRVEEFAAQ----------------L-GSDIVLQCDV 68 (265)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESST-TTHHHHHHHHHH----------------T-TCCCEEECCT
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEcCcH-HHHHHHHHHHHh----------------c-CCcEEEEccC
Confidence 689999999999 9999999999999999999999987 444555555442 1 1236789999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCC---CCCCcC-CCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEE
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKG---FKPLLQ-FTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIF 328 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~---~~~~~~-~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV 328 (512)
+|+++++++++++.+++|++|+||||||+... ..++.+ .+.++|++++++|+.|+++++++++|.|++ +|+||
T Consensus 69 ~~~~~v~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~---~g~iv 145 (265)
T 1qsg_A 69 AEDASIDTMFAELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNP---GSALL 145 (265)
T ss_dssp TCHHHHHHHHHHHHTTCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEE---EEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCCCCccccCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhcc---CCEEE
Confidence 99999999999999999999999999998642 156677 899999999999999999999999999964 47999
Q ss_pred eecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHH
Q 010380 329 NMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVAR 408 (512)
Q Consensus 329 ~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~ 408 (512)
++||. ++..+.++...|++||+|+++|+++++.|++++||+||+|+||+|+|++....... .... ......
T Consensus 146 ~isS~-~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~--~~~~------~~~~~~ 216 (265)
T 1qsg_A 146 TLSYL-GAERAIPNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGIKDF--RKML------AHCEAV 216 (265)
T ss_dssp EEECG-GGTSBCTTTTHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCCCCTTGGGSTTH--HHHH------HHHHHH
T ss_pred EEcch-hhccCCCCchHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCCccchhhccccc--HHHH------HHHHhc
Confidence 99997 56777888999999999999999999999999999999999999999986432110 0000 111223
Q ss_pred HhccccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 409 TLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 409 ~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
.+++++..|+|+++++.||+++...+.++..+..+|++
T Consensus 217 ~p~~~~~~~~dva~~v~~l~s~~~~~~tG~~~~vdgG~ 254 (265)
T 1qsg_A 217 TPIRRTVTIEDVGNSAAFLCSDLSAGISGEVVHVDGGF 254 (265)
T ss_dssp STTSSCCCHHHHHHHHHHHTSGGGTTCCSCEEEESTTG
T ss_pred CCCCCCCCHHHHHHHHHHHhCchhcCccCCEEEECCCc
Confidence 46778899999999999999987666566666666665
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-36 Score=303.07 Aligned_cols=229 Identities=23% Similarity=0.291 Sum_probs=192.0
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
.++++|++|||||++|||+++|++|+++|++|++++|+.+++++..+++.+. .+.++.++.+|+
T Consensus 8 ~~~~~k~vlITGas~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~----------------~~~~~~~~~~Dl 71 (311)
T 3o26_A 8 TVTKRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNS----------------NHENVVFHQLDV 71 (311)
T ss_dssp ----CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT----------------TCCSEEEEECCT
T ss_pred ccCCCcEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc----------------CCCceEEEEccC
Confidence 3568999999999999999999999999999999999999998888887552 235789999999
Q ss_pred CCh-hhHHHHHHHHHHHcCCCcccccccccCCC-----------------------------CCCCcCCCHHHHHHHHHh
Q 010380 253 CEP-ADVQKLSNFAVNEFGSIDIWINNAGTNKG-----------------------------FKPLLQFTNEEIEQIVST 302 (512)
Q Consensus 253 td~-~sv~~~~~~i~~~~g~IDvLInnAG~~~~-----------------------------~~~~~~~s~e~~~~~~~v 302 (512)
+|+ ++++++++.+.+++++||+||||||+... ..++.+.+.+++++++++
T Consensus 72 ~~~~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (311)
T 3o26_A 72 TDPIATMSSLADFIKTHFGKLDILVNNAGVAGFSVDADRFKAMISDIGEDSEELVKIYEKPEAQELMSETYELAEECLKI 151 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHSSCCEEEECCCCCSCEECHHHHHHHHHHHCSSTTHHHHHTTSHHHHTTEECCHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhCCCCCEEEECCcccccccccchhhhcccccccchhhcchhhcccchhcccccchhhhhhheee
Confidence 998 99999999999999999999999998631 124567789999999999
Q ss_pred hhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCC------------------------------------------
Q 010380 303 NLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSST------------------------------------------ 340 (512)
Q Consensus 303 Nv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~~~~~------------------------------------------ 340 (512)
|+.|+++++++++|.|+++ +.++||++||. ++..+.
T Consensus 152 N~~g~~~l~~~~~~~l~~~-~~~~IV~isS~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (311)
T 3o26_A 152 NYNGVKSVTEVLIPLLQLS-DSPRIVNVSSS-TGSLKYVSNETALEILGDGDALTEERIDMVVNMLLKDFKENLIETNGW 229 (311)
T ss_dssp HTHHHHHHHHHHHHHHTTS-SSCEEEEECCG-GGSGGGCCCHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHTTCTTTTTC
T ss_pred eeehHHHHHHHhhHhhccC-CCCeEEEEecC-CcccccccchhhhhhhccccccchhHHHHHHHHHHhhhhccccccccC
Confidence 9999999999999999876 57899999997 333321
Q ss_pred -CCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhccccccchh
Q 010380 341 -PLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPRIRVVKG 419 (512)
Q Consensus 341 -p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~r~~~~~~ 419 (512)
++...|++||+|+++|+++|+.|+.+ |+||+|+||+|+|+|..... ..+|++.|+.++.....+++
T Consensus 230 ~~~~~~Y~~SK~a~~~~~~~la~e~~~--i~v~~v~PG~v~T~~~~~~~-----------~~~~~~~a~~~~~~~~~~~~ 296 (311)
T 3o26_A 230 PSFGAAYTTSKACLNAYTRVLANKIPK--FQVNCVCPGLVKTEMNYGIG-----------NYTAEEGAEHVVRIALFPDD 296 (311)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHHCTT--SEEEEECCCSBCSGGGTTCC-----------SBCHHHHHHHHHHHHTCCSS
T ss_pred cccchhhHHHHHHHHHHHHHHHhhcCC--ceEEEecCCceecCCcCCCC-----------CCCHHHHHHHHHHHHhCCCC
Confidence 45678999999999999999999964 99999999999999975321 13789999999998888888
Q ss_pred hhhhhhhcCChHH
Q 010380 420 SGKAINYLTPPRI 432 (512)
Q Consensus 420 va~~v~~L~s~~~ 432 (512)
......|++++..
T Consensus 297 ~~~g~~~~~s~~a 309 (311)
T 3o26_A 297 GPSGFFYDCSELS 309 (311)
T ss_dssp CCCSCEETC----
T ss_pred CCCceEecccccc
Confidence 8888888887654
|
| >1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-37 Score=300.18 Aligned_cols=234 Identities=21% Similarity=0.328 Sum_probs=188.7
Q ss_pred cCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEcc
Q 010380 172 HCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACD 251 (512)
Q Consensus 172 ~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~D 251 (512)
..++++|++|||||++|||+++|++|+++|++|++++|++++++ .+..+.+|
T Consensus 10 ~~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~----------------------------~~~~~~~D 61 (247)
T 1uzm_A 10 KPPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPK----------------------------GLFGVEVD 61 (247)
T ss_dssp CCCCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCT----------------------------TSEEEECC
T ss_pred cccCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHH----------------------------HhcCeecc
Confidence 34678999999999999999999999999999999999865431 11138899
Q ss_pred CCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeec
Q 010380 252 VCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD 331 (512)
Q Consensus 252 ltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vS 331 (512)
++|+++++++++++.++++++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|.|+++ +.|+||++|
T Consensus 62 ~~~~~~~~~~~~~~~~~~g~id~lv~~Ag~~~-~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~g~iv~is 139 (247)
T 1uzm_A 62 VTDSDAVDRAFTAVEEHQGPVEVLVSNAGLSA-DAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRN-KFGRMIFIG 139 (247)
T ss_dssp TTCHHHHHHHHHHHHHHHSSCSEEEEECSCCC------CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCCCCC-CCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCCEEEEEC
Confidence 99999999999999999999999999999876 5778899999999999999999999999999999886 568999999
Q ss_pred CCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhc
Q 010380 332 GAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLV 411 (512)
Q Consensus 332 S~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l 411 (512)
|. .+..+.++...|++||+|++.|+++++.|++++||+||+|+||+|+|++...... ... .......++
T Consensus 140 S~-~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~----~~~------~~~~~~~p~ 208 (247)
T 1uzm_A 140 SV-SGLWGIGNQANYAASKAGVIGMARSIARELSKANVTANVVAPGYIDTDMTRALDE----RIQ------QGALQFIPA 208 (247)
T ss_dssp CC-CC-----CCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHSCH----HHH------HHHGGGCTT
T ss_pred CH-hhccCCCCChhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCCCcccchhhcCH----HHH------HHHHhcCCC
Confidence 98 5667778899999999999999999999999999999999999999998532111 000 001112345
Q ss_pred cccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 412 PRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 412 ~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
+++..|+|+++.+.||+++...+.++..+..+|++
T Consensus 209 ~~~~~~~dvA~~~~~l~s~~~~~~~G~~i~vdgG~ 243 (247)
T 1uzm_A 209 KRVGTPAEVAGVVSFLASEDASYISGAVIPVDGGM 243 (247)
T ss_dssp CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred CCCcCHHHHHHHHHHHcCccccCCcCCEEEECCCc
Confidence 77889999999999999987655556566666554
|
| >1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-37 Score=301.71 Aligned_cols=234 Identities=21% Similarity=0.207 Sum_probs=193.9
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHH---CCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEE
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLL---SGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIA 249 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~---~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~ 249 (512)
.++++|++|||||++|||+++|++|++ +|++|++++|+.++++++.+++.+.. .+.++.++.
T Consensus 2 ~~l~~k~~lVTGas~gIG~~ia~~l~~~~~~G~~V~~~~r~~~~~~~~~~~l~~~~---------------~~~~~~~~~ 66 (259)
T 1oaa_A 2 DGLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQ---------------PDLKVVLAA 66 (259)
T ss_dssp CCCBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHC---------------TTSEEEEEE
T ss_pred CCCCCcEEEEeCCCChHHHHHHHHHHHhhcCCCeEEEEeCCHHHHHHHHHHHHhhC---------------CCCeEEEEe
Confidence 357899999999999999999999999 89999999999998888887775521 145789999
Q ss_pred ccCCChhhHHHHHHHHHH--HcCCCc--ccccccccCCCC-CCCcC-CCHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-C
Q 010380 250 CDVCEPADVQKLSNFAVN--EFGSID--IWINNAGTNKGF-KPLLQ-FTNEEIEQIVSTNLVGSILCTREAMRVMRDQ-P 322 (512)
Q Consensus 250 ~Dltd~~sv~~~~~~i~~--~~g~ID--vLInnAG~~~~~-~~~~~-~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~-~ 322 (512)
+|++|+++++++++++.+ .+|++| +||||||+.... .++.+ .+.++|++++++|+.|+++++++++|.|+++ +
T Consensus 67 ~Dv~~~~~v~~~~~~~~~~~~~g~~d~~~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~ 146 (259)
T 1oaa_A 67 ADLGTEAGVQRLLSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPG 146 (259)
T ss_dssp CCTTSHHHHHHHHHHHHHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTT
T ss_pred cCCCCHHHHHHHHHHHHhccccccCCccEEEECCcccCCCCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 999999999999999988 678999 999999986422 45777 7899999999999999999999999999865 2
Q ss_pred CCCeEEeecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcch-hhhhhhhhhcC
Q 010380 323 KGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTI-QNKQMFNIICE 401 (512)
Q Consensus 323 ~~g~IV~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~-~~~~~~~~~~~ 401 (512)
+.|+||++||. ++..+.++...|++||+|+++|+++|+.|+++ |+||+|+||+|+|+|....... .....
T Consensus 147 ~~g~iv~isS~-~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~--i~vn~v~PG~v~T~~~~~~~~~~~~~~~------ 217 (259)
T 1oaa_A 147 LSKTVVNISSL-CALQPYKGWGLYCAGKAARDMLYQVLAAEEPS--VRVLSYAPGPLDNDMQQLARETSKDPEL------ 217 (259)
T ss_dssp CEEEEEEECCG-GGTSCCTTCHHHHHHHHHHHHHHHHHHHHCTT--EEEEEEECCSBSSHHHHHHHHHCSCHHH------
T ss_pred CCceEEEEcCc-hhcCCCCCccHHHHHHHHHHHHHHHHHhhCCC--ceEEEecCCCcCcchHHHHhhccCChhH------
Confidence 35899999998 67788899999999999999999999999974 9999999999999985321100 00000
Q ss_pred CHHHHHHHhccccccchhhhhhhhhcCCh
Q 010380 402 LPETVARTLVPRIRVVKGSGKAINYLTPP 430 (512)
Q Consensus 402 ~pe~vA~~~l~r~~~~~~va~~v~~L~s~ 430 (512)
........+++++..|+|+++.+.||+++
T Consensus 218 ~~~~~~~~p~~~~~~p~dvA~~v~~l~~~ 246 (259)
T 1oaa_A 218 RSKLQKLKSDGALVDCGTSAQKLLGLLQK 246 (259)
T ss_dssp HHHHHHHHHTTCSBCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhcCCcCCHHHHHHHHHHHHhh
Confidence 01112334578899999999999999864
|
| >2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-37 Score=305.67 Aligned_cols=249 Identities=13% Similarity=0.118 Sum_probs=200.2
Q ss_pred CCCCCEEEEECC--CChHHHHHHHHHHHCCCEEEEEEcChhhH-HHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEc
Q 010380 174 KAGPRNVVITGS--TRGLGKALAREFLLSGDRVVVASRSSESV-RMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIAC 250 (512)
Q Consensus 174 ~l~gk~vLVTGa--ssGIG~aiA~~La~~Ga~Vvl~~R~~~~l-~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~ 250 (512)
++++|++||||| ++|||+++|++|+++|++|++++|+.++. +++.++ .+.++.++.+
T Consensus 4 ~l~~k~vlVTGa~~s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~--------------------~~~~~~~~~~ 63 (269)
T 2h7i_A 4 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITDR--------------------LPAKAPLLEL 63 (269)
T ss_dssp TTTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHTT--------------------SSSCCCEEEC
T ss_pred ccCCCEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecChHHHHHHHHHh--------------------cCCCceEEEc
Confidence 478999999999 99999999999999999999999987652 322211 2346778999
Q ss_pred cCCChhhHHHHHHHHHHHcC---CCcccccccccCCC----CCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCC
Q 010380 251 DVCEPADVQKLSNFAVNEFG---SIDIWINNAGTNKG----FKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPK 323 (512)
Q Consensus 251 Dltd~~sv~~~~~~i~~~~g---~IDvLInnAG~~~~----~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~ 323 (512)
|++|+++++++++++.+++| ++|+||||||+..+ ..++.+.+.++|++++++|+.++++++++++|+|++
T Consensus 64 Dv~~~~~v~~~~~~~~~~~g~~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~--- 140 (269)
T 2h7i_A 64 DVQNEEHLASLAGRVTEAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNP--- 140 (269)
T ss_dssp CTTCHHHHHHHHHHHHHHHCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEE---
T ss_pred cCCCHHHHHHHHHHHHHHhCCCCCceEEEECCccCccccccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHhhcc---
Confidence 99999999999999999999 99999999998642 357888999999999999999999999999999975
Q ss_pred CCeEEeecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcch-hhhhhhhhhcC-
Q 010380 324 GGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTI-QNKQMFNIICE- 401 (512)
Q Consensus 324 ~g~IV~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~-~~~~~~~~~~~- 401 (512)
.|+||++||.. . .+.+.+..|++||+|+++|+++++.|++++||+||+|+||+|+|+|....... ...........
T Consensus 141 ~g~iv~iss~~-~-~~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~ 218 (269)
T 2h7i_A 141 GGSIVGMDFDP-S-RAMPAYNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGPIRTLAMSAIVGGALGEEAGAQIQLL 218 (269)
T ss_dssp EEEEEEEECCC-S-SCCTTTHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCHHHHHHHTTTTCHHHHHHHHHH
T ss_pred CCeEEEEcCcc-c-cccCchHHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccchhhhccccccchhhHHHHHHHH
Confidence 37999999873 3 66788899999999999999999999999999999999999999985321000 00000000000
Q ss_pred CHHHHHHHhcc-ccccchhhhhhhhhcCChHHHHHHHHHHhccCccc
Q 010380 402 LPETVARTLVP-RIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWF 447 (512)
Q Consensus 402 ~pe~vA~~~l~-r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~ 447 (512)
........+++ ++..|+|++.++.||+++...+.++..+..||++.
T Consensus 219 ~~~~~~~~p~~rr~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG~~ 265 (269)
T 2h7i_A 219 EEGWDQRAPIGWNMKDATPVAKTVCALLSDWLPATTGDIIYADGGAH 265 (269)
T ss_dssp HHHHHHHCTTCCCTTCCHHHHHHHHHHHSSSCTTCCSEEEEESTTGG
T ss_pred HHhhhccCCcccCCCCHHHHHHHHHHHhCchhccCcceEEEecCCee
Confidence 01112345677 69999999999999999987777777787777763
|
| >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-36 Score=297.50 Aligned_cols=246 Identities=23% Similarity=0.329 Sum_probs=186.4
Q ss_pred cCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEcc
Q 010380 172 HCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACD 251 (512)
Q Consensus 172 ~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~D 251 (512)
.+++++|++|||||++|||+++|++|+++|++|++++|+.+++++..+++.+ .+.++.++.+|
T Consensus 9 ~~~l~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-----------------~~~~~~~~~~D 71 (266)
T 1xq1_A 9 RWSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQK-----------------KGFQVTGSVCD 71 (266)
T ss_dssp TTCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-----------------TTCCEEEEECC
T ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-----------------cCCeeEEEECC
Confidence 4678899999999999999999999999999999999999888877777654 34578899999
Q ss_pred CCChhhHHHHHHHHHHHc-CCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEee
Q 010380 252 VCEPADVQKLSNFAVNEF-GSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNM 330 (512)
Q Consensus 252 ltd~~sv~~~~~~i~~~~-g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~v 330 (512)
++|+++++++++++.+.+ +++|+||||||+.. ..++.+.+.++|++.+++|+.++++++++++|.|+++ +.++||++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~id~li~~Ag~~~-~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~-~~~~iv~i 149 (266)
T 1xq1_A 72 ASLRPEREKLMQTVSSMFGGKLDILINNLGAIR-SKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKAS-GCGNIIFM 149 (266)
T ss_dssp TTSHHHHHHHHHHHHHHHTTCCSEEEEECCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SSCEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCCcEEEECCCCCC-CCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCcEEEEE
Confidence 999999999999999999 89999999999876 5778889999999999999999999999999999876 56899999
Q ss_pred cCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHh
Q 010380 331 DGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTL 410 (512)
Q Consensus 331 SS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~ 410 (512)
||. ++..+.++...|++||++++.|+++++.|++++||+|++|+||+|.|++...... .... .......+
T Consensus 150 sS~-~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~---~~~~------~~~~~~~~ 219 (266)
T 1xq1_A 150 SSI-AGVVSASVGSIYSATKGALNQLARNLACEWASDGIRANAVAPAVIATPLAEAVYD---DEFK------KVVISRKP 219 (266)
T ss_dssp C-----------CCHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCSCC------------------------------
T ss_pred ccc-hhccCCCCCchHHHHHHHHHHHHHHHHHHHhHhCcEEEEEeeCCCccchhhhhcC---HHHH------HHHHhcCC
Confidence 997 5667778889999999999999999999999999999999999999998643210 0000 11112345
Q ss_pred ccccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 411 VPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 411 l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
++++..|+|+++.+.||+++...+.++..+..+|++
T Consensus 220 ~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG~ 255 (266)
T 1xq1_A 220 LGRFGEPEEVSSLVAFLCMPAASYITGQTICVDGGL 255 (266)
T ss_dssp ----CCGGGGHHHHHHHTSGGGTTCCSCEEECCCCE
T ss_pred CCCCcCHHHHHHHHHHHcCccccCccCcEEEEcCCc
Confidence 667889999999999999987655556566666655
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-36 Score=297.21 Aligned_cols=246 Identities=24% Similarity=0.343 Sum_probs=204.4
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEc-ChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASR-SSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R-~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
++++|++|||||++|||+++|++|+++|++|++++| +.++++++.+++.+ .+.++.++.+|+
T Consensus 4 ~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~-----------------~~~~~~~~~~D~ 66 (261)
T 1gee_A 4 DLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKK-----------------VGGEAIAVKGDV 66 (261)
T ss_dssp GGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH-----------------TTCEEEEEECCT
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHh-----------------cCCceEEEECCC
Confidence 467899999999999999999999999999999999 77777777666654 346788999999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|+++++++++++.++++++|+||||||+.. ..++.+.+.++|++++++|+.++++++++++|.|.+++..++||++||
T Consensus 67 ~~~~~~~~~~~~~~~~~g~id~li~~Ag~~~-~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS 145 (261)
T 1gee_A 67 TVESDVINLVQSAIKEFGKLDVMINNAGLEN-PVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSS 145 (261)
T ss_dssp TSHHHHHHHHHHHHHHHSCCCEEEECCCCCC-CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCCCC-CCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence 9999999999999999999999999999876 567888999999999999999999999999999998733689999999
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhcc
Q 010380 333 AGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVP 412 (512)
Q Consensus 333 ~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~ 412 (512)
. .+..+.++...|++||+|++.|+++++.|+++.||+|++|+||+|.|++...... ..... .......+++
T Consensus 146 ~-~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~--~~~~~------~~~~~~~~~~ 216 (261)
T 1gee_A 146 V-HEKIPWPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPINAEKFA--DPEQR------ADVESMIPMG 216 (261)
T ss_dssp G-GGTSCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSGGGHHHHH--SHHHH------HHHHTTCTTS
T ss_pred H-HhcCCCCCccHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCcCCchhhhccc--ChhHH------HHHHhcCCCC
Confidence 8 5677888899999999999999999999999999999999999999998632100 00000 0011123456
Q ss_pred ccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 413 RIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 413 r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
++..|+++++++.||+++...+.++..+..+|++
T Consensus 217 ~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~ 250 (261)
T 1gee_A 217 YIGEPEEIAAVAAWLASSEASYVTGITLFADGGM 250 (261)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred CCcCHHHHHHHHHHHhCccccCCCCcEEEEcCCc
Confidence 7889999999999999876544455555555554
|
| >1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-36 Score=297.62 Aligned_cols=248 Identities=20% Similarity=0.243 Sum_probs=202.7
Q ss_pred cccCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEE
Q 010380 170 EEHCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIA 249 (512)
Q Consensus 170 ~~~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~ 249 (512)
...+++++|++|||||++|||+++|++|+++|++|++++|+.++.++..+++.+. .+.++.++.
T Consensus 7 ~~~~~~~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~----------------~~~~~~~~~ 70 (265)
T 1h5q_A 7 GFTISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKE----------------FGVKTKAYQ 70 (265)
T ss_dssp CEEECCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHH----------------HTCCEEEEE
T ss_pred CCCcccCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCcchhhHHHHHHHHHh----------------cCCeeEEEE
Confidence 3456789999999999999999999999999999999999877766666665442 235788999
Q ss_pred ccCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEe
Q 010380 250 CDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFN 329 (512)
Q Consensus 250 ~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~ 329 (512)
+|++|+++++++++++.+.++++|+||||||+.. ..++.+.+.++|++++++|+.++++++++++|.|.+++..++||+
T Consensus 71 ~Dl~~~~~~~~~~~~~~~~~~~id~li~~Ag~~~-~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~ 149 (265)
T 1h5q_A 71 CDVSNTDIVTKTIQQIDADLGPISGLIANAGVSV-VKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVV 149 (265)
T ss_dssp CCTTCHHHHHHHHHHHHHHSCSEEEEEECCCCCC-CSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred eeCCCHHHHHHHHHHHHHhcCCCCEEEECCCcCC-CCchhhCCHHHHHHHHhhhhHhHHHHHHHHHHHHHhcCCCceEEE
Confidence 9999999999999999999999999999999876 577888999999999999999999999999999987644589999
Q ss_pred ecCCCCCCCCCC-------CcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCC
Q 010380 330 MDGAGSGGSSTP-------LTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICEL 402 (512)
Q Consensus 330 vSS~~a~~~~~p-------~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~ 402 (512)
+||. .+..+.+ +...|++||++++.|+++++.|+++.||+|++|+||+|.|++....... ..
T Consensus 150 ~sS~-~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~----~~------ 218 (265)
T 1h5q_A 150 TSSM-SSQIINQSSLNGSLTQVFYNSSKAACSNLVKGLAAEWASAGIRVNALSPGYVNTDQTAHMDKK----IR------ 218 (265)
T ss_dssp ECCG-GGTSCCEEETTEECSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGGGSCHH----HH------
T ss_pred eCCc-hhhccccccccccccccccHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCccccccccccchh----HH------
Confidence 9987 3443332 2678999999999999999999999999999999999999986432110 00
Q ss_pred HHHHHHHhccccccchhhhhhhhhcCChHHHHHHHHHHhccCc
Q 010380 403 PETVARTLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGR 445 (512)
Q Consensus 403 pe~vA~~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~ 445 (512)
.......+++++..|+|+++++.||+++...+.++..+..+|+
T Consensus 219 ~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG 261 (265)
T 1h5q_A 219 DHQASNIPLNRFAQPEEMTGQAILLLSDHATYMTGGEYFIDGG 261 (265)
T ss_dssp HHHHHTCTTSSCBCGGGGHHHHHHHHSGGGTTCCSCEEEECTT
T ss_pred HHHHhcCcccCCCCHHHHHHHHHhhccCchhcCcCcEEEecCC
Confidence 0111224567788999999999999987654444444444444
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-36 Score=301.95 Aligned_cols=234 Identities=21% Similarity=0.314 Sum_probs=188.5
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
++.+|++|||||++|||+++|++|+++|++|++++|+.+++++..++ .+.++.++.+|++
T Consensus 2 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~--------------------~~~~~~~~~~Dv~ 61 (281)
T 3m1a_A 2 SESAKVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLVAA--------------------YPDRAEAISLDVT 61 (281)
T ss_dssp --CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHH--------------------CTTTEEEEECCTT
T ss_pred CCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh--------------------ccCCceEEEeeCC
Confidence 46789999999999999999999999999999999998887655443 2357889999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
|+++++++++++.++++++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|.|+++ +.++||++||.
T Consensus 62 ~~~~~~~~~~~~~~~~g~id~lv~~Ag~~~-~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~~~iv~~sS~ 139 (281)
T 3m1a_A 62 DGERIDVVAADVLARYGRVDVLVNNAGRTQ-VGAFEETTERELRDLFELHVFGPARLTRALLPQMRER-GSGSVVNISSF 139 (281)
T ss_dssp CHHHHHHHHHHHHHHHSCCSEEEECCCCEE-ECCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCG
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEECCCcCC-CCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCEEEEEcCc
Confidence 999999999999999999999999999976 5788899999999999999999999999999999886 57899999998
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhh---hhhhhhcCCHHHHHHHh
Q 010380 334 GSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNK---QMFNIICELPETVARTL 410 (512)
Q Consensus 334 ~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~---~~~~~~~~~pe~vA~~~ 410 (512)
++..+.++...|++||+|+++|+++++.|++++||+||+|+||+|+|++.......... .................
T Consensus 140 -~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (281)
T 3m1a_A 140 -GGQLSFAGFSAYSATKAALEQLSEGLADEVAPFGIKVLIVEPGAFRTNLFGKGAAYFSEENPAYAEKVGPTRQLVQGSD 218 (281)
T ss_dssp -GGTCCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTCCCCEEECCBCTTTHHHHHHHHHHHHC--
T ss_pred -cccCCCCCchHHHHHHHHHHHHHHHHHHHhhccCcEEEEEecCccccccccccccccCCcchhhHHHhHHHHHHHhhcc
Confidence 67788899999999999999999999999999999999999999999997543211000 00000000011112233
Q ss_pred ccccccchhhhhhhhhcCCh
Q 010380 411 VPRIRVVKGSGKAINYLTPP 430 (512)
Q Consensus 411 l~r~~~~~~va~~v~~L~s~ 430 (512)
..+...|+|+++++.+++..
T Consensus 219 ~~~~~~~~dva~a~~~~~~~ 238 (281)
T 3m1a_A 219 GSQPGDPAKAAAAIRLALDT 238 (281)
T ss_dssp ---CBCHHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHhC
Confidence 45567788888887776643
|
| >2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-36 Score=295.90 Aligned_cols=233 Identities=23% Similarity=0.314 Sum_probs=193.9
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChh
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPA 256 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~ 256 (512)
+|+++||||++|||+++|++|+++|++|++++|+.+++ .+++ + +.++.+|++| +
T Consensus 2 ~k~vlVTGas~giG~~~a~~l~~~G~~V~~~~r~~~~~---~~~~--------------------~--~~~~~~D~~~-~ 55 (239)
T 2ekp_A 2 ERKALVTGGSRGIGRAIAEALVARGYRVAIASRNPEEA---AQSL--------------------G--AVPLPTDLEK-D 55 (239)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHH---HHHH--------------------T--CEEEECCTTT-S
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH---HHhh--------------------C--cEEEecCCch-H
Confidence 68999999999999999999999999999999997652 1211 1 5678999999 9
Q ss_pred hHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCC
Q 010380 257 DVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSG 336 (512)
Q Consensus 257 sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~ 336 (512)
+++++++++.+.++++|+||||||+.. ..++.+.+.++|++++++|+.++++++++++|.|+++ +.|+||++||. ++
T Consensus 56 ~~~~~~~~~~~~~g~id~lv~~Ag~~~-~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~-~~g~iv~isS~-~~ 132 (239)
T 2ekp_A 56 DPKGLVKRALEALGGLHVLVHAAAVNV-RKPALELSYEEWRRVLYLHLDVAFLLAQAAAPHMAEA-GWGRVLFIGSV-TT 132 (239)
T ss_dssp CHHHHHHHHHHHHTSCCEEEECCCCCC-CCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCG-GG
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCCC-CCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCcEEEEECch-hh
Confidence 999999999999999999999999876 5788899999999999999999999999999999876 57899999997 55
Q ss_pred CCCC--CCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhcccc
Q 010380 337 GSST--PLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPRI 414 (512)
Q Consensus 337 ~~~~--p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~r~ 414 (512)
..+. ++...|++||+|++.|+++++.|++++||+||+|+||+|+|++...... ..... .......+++++
T Consensus 133 ~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~--~~~~~------~~~~~~~p~~~~ 204 (239)
T 2ekp_A 133 FTAGGPVPIPAYTTAKTALLGLTRALAKEWARLGIRVNLLCPGYVETEFTLPLRQ--NPELY------EPITARIPMGRW 204 (239)
T ss_dssp TSCCTTSCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHT--CHHHH------HHHHTTCTTSSC
T ss_pred ccCCCCCCCccHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCCccCchhhcccc--CHHHH------HHHHhcCCCCCC
Confidence 5665 7889999999999999999999999999999999999999998532100 00000 011122456788
Q ss_pred ccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 415 RVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 415 ~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
..|+|+++.+.||+++...+.++..+..+|++
T Consensus 205 ~~~~dvA~~~~~l~s~~~~~~tG~~~~vdgG~ 236 (239)
T 2ekp_A 205 ARPEEIARVAAVLCGDEAEYLTGQAVAVDGGF 236 (239)
T ss_dssp BCHHHHHHHHHHHTSGGGTTCCSCEEEESTTT
T ss_pred cCHHHHHHHHHHHcCchhcCCCCCEEEECCCc
Confidence 89999999999999987656566666666654
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-36 Score=292.98 Aligned_cols=246 Identities=21% Similarity=0.244 Sum_probs=201.8
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
+++++|++|||||++|||+++|++|+++|++|++++|+.+++++..+++.+ .+.++.++.+|+
T Consensus 9 ~~l~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~-----------------~~~~~~~~~~D~ 71 (260)
T 3awd_A 9 LRLDNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRM-----------------EGHDVSSVVMDV 71 (260)
T ss_dssp GCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-----------------TTCCEEEEECCT
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-----------------cCCceEEEEecC
Confidence 568899999999999999999999999999999999999888777777654 345789999999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|+++++++++++.++++++|+||||||+.....++.+.+.++|++.+++|+.++++++++++|.|+++ +.++||++||
T Consensus 72 ~~~~~~~~~~~~~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~iv~~sS 150 (260)
T 3awd_A 72 TNTESVQNAVRSVHEQEGRVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRSCQAVGRIMLEQ-KQGVIVAIGS 150 (260)
T ss_dssp TCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCSCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECC
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhc-CCCEEEEEec
Confidence 999999999999999999999999999986534677889999999999999999999999999999876 4689999998
Q ss_pred CCCCCCCCCCc--chhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHh
Q 010380 333 AGSGGSSTPLT--AVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTL 410 (512)
Q Consensus 333 ~~a~~~~~p~~--~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~ 410 (512)
. .+..+.++. ..|++||++++.|+++++.|++++||+|++|+||+|.|++...... ..... .......+
T Consensus 151 ~-~~~~~~~~~~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~pg~v~t~~~~~~~~--~~~~~------~~~~~~~~ 221 (260)
T 3awd_A 151 M-SGLIVNRPQQQAAYNASKAGVHQYIRSLAAEWAPHGIRANAVAPTYIETTLTRFGME--KPELY------DAWIAGTP 221 (260)
T ss_dssp G-GGTSCCSSSCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTHHHHT--CHHHH------HHHHHTCT
T ss_pred c-hhcccCCCCCccccHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeeeeccchhhcccC--ChHHH------HHHHhcCC
Confidence 7 556666666 8999999999999999999999999999999999999998631000 00000 01112235
Q ss_pred ccccccchhhhhhhhhcCChHHHHHHHHHHhccCc
Q 010380 411 VPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGR 445 (512)
Q Consensus 411 l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~ 445 (512)
++++..|+|+++++.||+++...+.++..+..+|+
T Consensus 222 ~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg 256 (260)
T 3awd_A 222 MGRVGQPDEVASVVQFLASDAASLMTGAIVNVDAG 256 (260)
T ss_dssp TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred cCCCCCHHHHHHHHHHHhCchhccCCCcEEEECCc
Confidence 67788999999999999987643333333444443
|
| >2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-36 Score=298.15 Aligned_cols=238 Identities=18% Similarity=0.253 Sum_probs=193.7
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
++++|++|||||++|||+++|++|+++|++|++++|++++++++. + . .++.++.+|++
T Consensus 3 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~-~--------------------~-~~~~~~~~D~~ 60 (246)
T 2ag5_A 3 RLDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELE-K--------------------Y-PGIQTRVLDVT 60 (246)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGG-G--------------------S-TTEEEEECCTT
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-h--------------------c-cCceEEEeeCC
Confidence 468999999999999999999999999999999999976654321 1 1 25788999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
|+++++ ++.++++++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|.|+++ +.|+||++||.
T Consensus 61 ~~~~~~----~~~~~~~~id~lv~~Ag~~~-~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~-~~g~iv~isS~ 134 (246)
T 2ag5_A 61 KKKQID----QFANEVERLDVLFNVAGFVH-HGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQ-KSGNIINMSSV 134 (246)
T ss_dssp CHHHHH----HHHHHCSCCSEEEECCCCCC-CBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCS
T ss_pred CHHHHH----HHHHHhCCCCEEEECCccCC-CCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCceEEEEech
Confidence 999988 44556789999999999876 5778899999999999999999999999999999876 57899999997
Q ss_pred CCCCCCCC-CcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchh--hhhhhhhhcCCHHHHHHHh
Q 010380 334 GSGGSSTP-LTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQ--NKQMFNIICELPETVARTL 410 (512)
Q Consensus 334 ~a~~~~~p-~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~--~~~~~~~~~~~pe~vA~~~ 410 (512)
++..+.+ +...|++||+|++.|+++++.|++++||+||+|+||+|.|++........ .... ........+
T Consensus 135 -~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~------~~~~~~~~~ 207 (246)
T 2ag5_A 135 -ASSVKGVVNRCVYSTTKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSLQERIQARGNPEEA------RNDFLKRQK 207 (246)
T ss_dssp -BTTTBCCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCEECHHHHHHHHHSSSHHHH------HHHHHHTCT
T ss_pred -HhCcCCCCCCccHHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeCcCcCcchhhhhhcccCcHHH------HHHHHhcCC
Confidence 5556666 88999999999999999999999999999999999999999853210000 0000 011122345
Q ss_pred ccccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 411 VPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 411 l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
++++..|+|+++++.||+++...+.++..+..+|++
T Consensus 208 ~~~~~~~~dvA~~v~~l~s~~~~~~tG~~i~vdgG~ 243 (246)
T 2ag5_A 208 TGRFATAEEIAMLCVYLASDESAYVTGNPVIIDGGW 243 (246)
T ss_dssp TSSCEEHHHHHHHHHHHHSGGGTTCCSCEEEECTTG
T ss_pred CCCCCCHHHHHHHHHHHhCccccCCCCCEEEECCCc
Confidence 678899999999999999988766666666666665
|
| >1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-37 Score=299.84 Aligned_cols=232 Identities=16% Similarity=0.164 Sum_probs=193.8
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEE-E--cChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSGDRVVVA-S--RSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~-~--R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
+|++|||||++|||+++|++|+++|++|+++ + |+.++++++.+++ . + +|+.
T Consensus 1 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~r~~~~~~~~~~~~-~------------------~-------~~~~ 54 (244)
T 1zmo_A 1 MVIALVTHARHFAGPAAVEALTQDGYTVVCHDASFADAAERQRFESEN-P------------------G-------TIAL 54 (244)
T ss_dssp -CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHHHHS-T------------------T-------EEEC
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCcCCHHHHHHHHHHh-C------------------C-------Cccc
Confidence 5899999999999999999999999999999 6 9988776554443 1 1 2334
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCC---CCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEee
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGF---KPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNM 330 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~---~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~v 330 (512)
|+++++++++++.++++++|+||||||+.. . .++.+.+.++|++++++|+.|+++++++++|.|+++ +.|+||++
T Consensus 55 ~~~~v~~~~~~~~~~~g~iD~lv~~Ag~~~-~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~-~~g~iv~i 132 (244)
T 1zmo_A 55 AEQKPERLVDATLQHGEAIDTIVSNDYIPR-PMNRLPLEGTSEADIRQMFEALSIFPILLLQSAIAPLRAA-GGASVIFI 132 (244)
T ss_dssp CCCCGGGHHHHHGGGSSCEEEEEECCCCCT-TGGGCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCcCC-CCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCcEEEEE
Confidence 888899999999999999999999999876 5 778899999999999999999999999999999887 57999999
Q ss_pred cCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcc---cCCcchhhhhhhhhhcCCHHHHH
Q 010380 331 DGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLL---LSGSTIQNKQMFNIICELPETVA 407 (512)
Q Consensus 331 SS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~---~~~~~~~~~~~~~~~~~~pe~vA 407 (512)
||. ++..+.++...|++||+|+++|+++|+.|++++||+||+|+||+|+|+|. .... .... ..+...
T Consensus 133 sS~-~~~~~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~---~~~~------~~~~~~ 202 (244)
T 1zmo_A 133 TSS-VGKKPLAYNPLYGPARAATVALVESAAKTLSRDGILLYAIGPNFFNNPTYFPTSDWE---NNPE------LRERVD 202 (244)
T ss_dssp CCG-GGTSCCTTCTTHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCBTTTBCHHHHH---HCHH------HHHHHH
T ss_pred CCh-hhCCCCCCchHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcCCccccccccc---chHH------HHHHHh
Confidence 998 67778889999999999999999999999999999999999999999986 2210 0000 011122
Q ss_pred -HHhccccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 408 -RTLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 408 -~~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
..+++++..|+++++.+.||+++...+.++..+..||++
T Consensus 203 ~~~p~~r~~~pe~vA~~v~~l~s~~~~~~tG~~i~vdgG~ 242 (244)
T 1zmo_A 203 RDVPLGRLGRPDEMGALITFLASRRAAPIVGQFFAFTGGY 242 (244)
T ss_dssp HHCTTCSCBCHHHHHHHHHHHHTTTTGGGTTCEEEESTTC
T ss_pred cCCCCCCCcCHHHHHHHHHHHcCccccCccCCEEEeCCCC
Confidence 356788999999999999999987767777777677665
|
| >3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-35 Score=302.66 Aligned_cols=193 Identities=23% Similarity=0.352 Sum_probs=164.7
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcC-----hhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEE
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRS-----SESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAG 247 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~-----~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~ 247 (512)
|++++|++|||||++|||+++|++|+++|++|++++|+ .++++++.+.+.+ .+.++.+
T Consensus 1 M~m~~k~vlVTGas~GIG~aia~~L~~~G~~V~~~~r~~~~r~~~~~~~l~~~~~~-----------------~~~~~~~ 63 (324)
T 3u9l_A 1 MVMSKKIILITGASSGFGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAGFARD-----------------NDVDLRT 63 (324)
T ss_dssp ----CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCTTTTTHHHHHHHHHHHHH-----------------HTCCEEE
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEecCcccccCHHHHHHHHHHHHh-----------------cCCcEEE
Confidence 35678999999999999999999999999999998886 3444444444433 3467899
Q ss_pred EEccCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeE
Q 010380 248 IACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHI 327 (512)
Q Consensus 248 v~~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~I 327 (512)
+.+|++|+++++++++++.+++|++|+||||||+.. .+++.+.+.++|++++++|+.|+++++++++|+|+++ +.|+|
T Consensus 64 ~~~Dvtd~~~v~~~~~~~~~~~g~iD~lVnnAG~~~-~~~~~~~~~~~~~~~~~vN~~g~~~l~~a~lp~m~~~-~~g~i 141 (324)
T 3u9l_A 64 LELDVQSQVSVDRAIDQIIGEDGRIDVLIHNAGHMV-FGPAEAFTPEQFAELYDINVLSTQRVNRAALPHMRRQ-KHGLL 141 (324)
T ss_dssp EECCTTCHHHHHHHHHHHHHHHSCCSEEEECCCCCB-CSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEE
T ss_pred EEeecCCHHHHHHHHHHHHHHcCCCCEEEECCCcCC-CCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCEE
Confidence 999999999999999999999999999999999987 6889999999999999999999999999999999887 57899
Q ss_pred EeecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcc
Q 010380 328 FNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLL 384 (512)
Q Consensus 328 V~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~ 384 (512)
|++||..+...+.++.+.|++||+|+++|+++++.|+++.||+||+|+||+|.|++.
T Consensus 142 V~isS~~~~~~~~~~~~~Y~asKaa~~~~~~~la~el~~~gI~v~~v~PG~v~t~~~ 198 (324)
T 3u9l_A 142 IWISSSSSAGGTPPYLAPYFAAKAAMDAIAVQYARELSRWGIETSIIVPGAFTSGTN 198 (324)
T ss_dssp EEECCGGGTSCCCSSCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCC-----
T ss_pred EEEecchhccCCCCcchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEECCccccCch
Confidence 999998433345677889999999999999999999999999999999999998864
|
| >3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-35 Score=292.38 Aligned_cols=222 Identities=25% Similarity=0.357 Sum_probs=179.3
Q ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhh
Q 010380 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPAD 257 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~s 257 (512)
|+++||||++|||+++|++|+++|++|++++|+.++++++.+++ +.++.++.+|++|+++
T Consensus 1 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~--------------------~~~~~~~~~Dv~~~~~ 60 (248)
T 3asu_A 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDEL--------------------GDNLYIAQLDVRNRAA 60 (248)
T ss_dssp CEEEETTTTSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH--------------------CTTEEEEECCTTCHHH
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--------------------cCceEEEEcCCCCHHH
Confidence 68999999999999999999999999999999988776655544 1357889999999999
Q ss_pred HHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCCC
Q 010380 258 VQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGG 337 (512)
Q Consensus 258 v~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~~ 337 (512)
++++++++.+++|++|+||||||+.....++.+.+.++|++++++|+.|+++++++++|.|+++ +.|+||++||. ++.
T Consensus 61 v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~-~~g~iv~isS~-~~~ 138 (248)
T 3asu_A 61 IEEMLASLPAEWCNIDILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVER-NHGHIINIGST-AGS 138 (248)
T ss_dssp HHHHHHTSCTTTCCCCEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEECCG-GGT
T ss_pred HHHHHHHHHHhCCCCCEEEECCCcCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCceEEEEccc-hhc
Confidence 9999999999999999999999986434678899999999999999999999999999999876 56899999998 677
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCccc-CCcccCCcchhhhhhhhhhcCCHHHHHHHhcccccc
Q 010380 338 SSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVL-TDLLLSGSTIQNKQMFNIICELPETVARTLVPRIRV 416 (512)
Q Consensus 338 ~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~-T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~r~~~ 416 (512)
.+.++...|++||+|+++|+++|+.|++++||+||+|+||+|+ |+|............ +.... ......
T Consensus 139 ~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~gT~~~~~~~~~~~~~~--------~~~~~--~~~~~~ 208 (248)
T 3asu_A 139 WPYAGGNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGGTEFSNVRFKGDDGKA--------EKTYQ--NTVALT 208 (248)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHHHHHTTTSCCEEEEEEECSBCC--------------------------------CCBC
T ss_pred cCCCCCchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEeccccccCcchhhcccCchHHH--------HHHHh--ccCCCC
Confidence 7888999999999999999999999999999999999999999 998532110000000 00000 012247
Q ss_pred chhhhhhhhhcCChH
Q 010380 417 VKGSGKAINYLTPPR 431 (512)
Q Consensus 417 ~~~va~~v~~L~s~~ 431 (512)
|+|+++.+.||+++.
T Consensus 209 p~dvA~~v~~l~s~~ 223 (248)
T 3asu_A 209 PEDVSEAVWWVSTLP 223 (248)
T ss_dssp HHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhcCC
Confidence 888888888888753
|
| >2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-36 Score=298.74 Aligned_cols=226 Identities=24% Similarity=0.317 Sum_probs=182.8
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
+++ |++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+ . .++.++.+|++
T Consensus 19 ~~~-k~vlVTGas~gIG~aia~~La~~G~~V~~~~r~~~~~~~~~~~~~~-----------------~-~~~~~~~~Dv~ 79 (272)
T 2nwq_A 19 HMS-STLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAGELSA-----------------K-TRVLPLTLDVR 79 (272)
T ss_dssp --C-CEEEESSTTTSSHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTT-----------------T-SCEEEEECCTT
T ss_pred CcC-cEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhc-----------------C-CcEEEEEcCCC
Confidence 455 9999999999999999999999999999999998888776666532 1 46888999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCC-eEEeecC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGG-HIFNMDG 332 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g-~IV~vSS 332 (512)
|+++++++++++.+++|++|+||||||+.....++.+.+.++|++++++|+.|+++++++++|.|+++ +.| +||++||
T Consensus 80 d~~~v~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~-~~g~~IV~isS 158 (272)
T 2nwq_A 80 DRAAMSAAVDNLPEEFATLRGLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLPRLIAH-GAGASIVNLGS 158 (272)
T ss_dssp CHHHHHHHHHTCCGGGSSCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-CTTCEEEEECC
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCcEEEEeCC
Confidence 99999999999999999999999999987533678899999999999999999999999999999876 456 9999999
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHh-c
Q 010380 333 AGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTL-V 411 (512)
Q Consensus 333 ~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~-l 411 (512)
. .+..+.++...|++||+|+++|+++++.|++++||+||+|+||+|+|+|........ ++...... -
T Consensus 159 ~-~~~~~~~~~~~Y~asKaa~~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~~~~~~-----------~~~~~~~~~~ 226 (272)
T 2nwq_A 159 V-AGKWPYPGSHVYGGTKAFVEQFSLNLRCDLQGTGVRVTNLEPGLCESEFSLVRFGGD-----------QARYDKTYAG 226 (272)
T ss_dssp G-GGTSCCTTCHHHHHHHHHHHHHHHHHHTTCTTSCCEEEEEEECSBC-------------------------------C
T ss_pred c-hhccCCCCCchHHHHHHHHHHHHHHHHHHhCccCeEEEEEEcCCCcCcchhcccccc-----------hHHHHHhhcc
Confidence 8 677788889999999999999999999999999999999999999999864211000 00000000 0
Q ss_pred cccccchhhhhhhhhcCChH
Q 010380 412 PRIRVVKGSGKAINYLTPPR 431 (512)
Q Consensus 412 ~r~~~~~~va~~v~~L~s~~ 431 (512)
.....|+|+++.+.||+++.
T Consensus 227 ~~~~~pedvA~~v~~l~s~~ 246 (272)
T 2nwq_A 227 AHPIQPEDIAETIFWIMNQP 246 (272)
T ss_dssp CCCBCHHHHHHHHHHHHTSC
T ss_pred CCCCCHHHHHHHHHHHhCCC
Confidence 12357888999999988764
|
| >2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-36 Score=298.08 Aligned_cols=239 Identities=21% Similarity=0.322 Sum_probs=199.1
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
++++|++|||||++|||+++|++|+++|++|++++|+.++ +.++.++.+|++
T Consensus 5 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~----------------------------~~~~~~~~~Dl~ 56 (264)
T 2dtx_A 5 DLRDKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIHDPG----------------------------EAKYDHIECDVT 56 (264)
T ss_dssp GGTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSCCC----------------------------SCSSEEEECCTT
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEecCccc----------------------------CCceEEEEecCC
Confidence 4689999999999999999999999999999999998653 135678999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
|+++++++++++.+++|++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|.|+++ +.|+||++||.
T Consensus 57 ~~~~v~~~~~~~~~~~g~iD~lv~~Ag~~~-~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~g~iv~isS~ 134 (264)
T 2dtx_A 57 NPDQVKASIDHIFKEYGSISVLVNNAGIES-YGKIESMSMGEWRRIIDVNLFGYYYASKFAIPYMIRS-RDPSIVNISSV 134 (264)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCCC-CBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTS-SSCEEEEECCG
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCC-CCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCcEEEEECCc
Confidence 999999999999999999999999999876 5788899999999999999999999999999999876 57899999998
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchh---hhh-hhhhhcCCHHHHHHH
Q 010380 334 GSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQ---NKQ-MFNIICELPETVART 409 (512)
Q Consensus 334 ~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~---~~~-~~~~~~~~pe~vA~~ 409 (512)
++..+.++...|++||+|++.|+++++.|+++. |+||+|+||+|+|++........ ... .... ........
T Consensus 135 -~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~-i~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 209 (264)
T 2dtx_A 135 -QASIITKNASAYVTSKHAVIGLTKSIALDYAPL-LRCNAVCPATIDTPLVRKAAELEVGSDPMRIEKK---ISEWGHEH 209 (264)
T ss_dssp -GGTSCCTTBHHHHHHHHHHHHHHHHHHHHHTTT-SEEEEEEECSBCSHHHHHHHHHHHCSCHHHHHHH---HHHHHHHS
T ss_pred -hhccCCCCchhHHHHHHHHHHHHHHHHHHhcCC-cEEEEEEeCCCcCcchhhhhhcccccCchhhHHH---HHHHHhcC
Confidence 677788889999999999999999999999988 99999999999999853210000 000 0000 01112234
Q ss_pred hccccccchhhhhhhhhcCChHHHHHHHHHHhccCccc
Q 010380 410 LVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWF 447 (512)
Q Consensus 410 ~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~ 447 (512)
+++++..|+|+++++.||+++...+.++..+..+|++.
T Consensus 210 p~~~~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdGG~~ 247 (264)
T 2dtx_A 210 PMQRIGKPQEVASAVAFLASREASFITGTCLYVDGGLS 247 (264)
T ss_dssp TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred CCCCCcCHHHHHHHHHHHhCchhcCCCCcEEEECCCcc
Confidence 66788999999999999999877666666666666653
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-35 Score=291.11 Aligned_cols=234 Identities=22% Similarity=0.373 Sum_probs=198.3
Q ss_pred cccCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEE
Q 010380 170 EEHCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIA 249 (512)
Q Consensus 170 ~~~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~ 249 (512)
.+.+++++|++|||||++|||+++|++|+++|++|++++|+.+++++..+++.+ .+.++.++.
T Consensus 4 ~~~~~~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-----------------~~~~~~~~~ 66 (255)
T 1fmc_A 4 SDNLRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQ-----------------LGGQAFACR 66 (255)
T ss_dssp GGGGCCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHH-----------------TTCCEEEEE
T ss_pred ccCCCCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHH-----------------hCCceEEEE
Confidence 345678999999999999999999999999999999999999888777777654 345788999
Q ss_pred ccCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEe
Q 010380 250 CDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFN 329 (512)
Q Consensus 250 ~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~ 329 (512)
+|++|+++++++++++.++++++|+||||||... ..++ +.+.++|++.+++|+.++++++++++|.|+++ +.++||+
T Consensus 67 ~D~~~~~~~~~~~~~~~~~~~~~d~vi~~Ag~~~-~~~~-~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~~~iv~ 143 (255)
T 1fmc_A 67 CDITSEQELSALADFAISKLGKVDILVNNAGGGG-PKPF-DMPMADFRRAYELNVFSFFHLSQLVAPEMEKN-GGGVILT 143 (255)
T ss_dssp CCTTCHHHHHHHHHHHHHHHSSCCEEEECCCCCC-CCCT-TCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEE
T ss_pred cCCCCHHHHHHHHHHHHHhcCCCCEEEECCCCCC-CCCC-CCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCcEEEE
Confidence 9999999999999999999999999999999876 4455 78999999999999999999999999999876 4689999
Q ss_pred ecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHH
Q 010380 330 MDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVART 409 (512)
Q Consensus 330 vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~ 409 (512)
+||. ....+.++...|++||++++.|++.++.|+++.||+|++|+||++.|++....... ... .......
T Consensus 144 ~sS~-~~~~~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~v~Pg~v~t~~~~~~~~~---~~~------~~~~~~~ 213 (255)
T 1fmc_A 144 ITSM-AAENKNINMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSVITP---EIE------QKMLQHT 213 (255)
T ss_dssp ECCG-GGTCCCTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTTCCH---HHH------HHHHHTC
T ss_pred Ecch-hhcCCCCCCcccHHHHHHHHHHHHHHHHHhhhcCcEEEEEecccCcchhhhhccCh---HHH------HHHHhcC
Confidence 9987 56677788899999999999999999999999999999999999999986432110 000 0111224
Q ss_pred hccccccchhhhhhhhhcCChHHH
Q 010380 410 LVPRIRVVKGSGKAINYLTPPRIL 433 (512)
Q Consensus 410 ~l~r~~~~~~va~~v~~L~s~~~~ 433 (512)
+++++..|+|+++++.|++++...
T Consensus 214 ~~~~~~~~~dva~~~~~l~~~~~~ 237 (255)
T 1fmc_A 214 PIRRLGQPQDIANAALFLCSPAAS 237 (255)
T ss_dssp SSCSCBCHHHHHHHHHHHHSGGGT
T ss_pred CcccCCCHHHHHHHHHHHhCCccc
Confidence 567788999999999999987543
|
| >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-36 Score=300.79 Aligned_cols=245 Identities=22% Similarity=0.315 Sum_probs=201.4
Q ss_pred ccCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEc
Q 010380 171 EHCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIAC 250 (512)
Q Consensus 171 ~~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~ 250 (512)
..+++++|++|||||++|||+++|++|+++|++|++++|++++++++.+++.+ .+.++.++.+
T Consensus 38 ~~~~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~-----------------~~~~~~~~~~ 100 (285)
T 2c07_A 38 YYYCGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKS-----------------FGYESSGYAG 100 (285)
T ss_dssp CCCCCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHT-----------------TTCCEEEEEC
T ss_pred ccccCCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHh-----------------cCCceeEEEC
Confidence 35668899999999999999999999999999999999998888777766643 3457889999
Q ss_pred cCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEee
Q 010380 251 DVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNM 330 (512)
Q Consensus 251 Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~v 330 (512)
|++|+++++++++++.+.++++|+||||||+.. ..++.+.+.++|++++++|+.|++++++.++|.|.++ +.++||++
T Consensus 101 Dl~d~~~v~~~~~~~~~~~~~id~li~~Ag~~~-~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~~~iv~i 178 (285)
T 2c07_A 101 DVSKKEEISEVINKILTEHKNVDILVNNAGITR-DNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINN-RYGRIINI 178 (285)
T ss_dssp CTTCHHHHHHHHHHHHHHCSCCCEEEECCCCCC-CCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHH-TCEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCEEEECCCCCC-CCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhC-CCCEEEEE
Confidence 999999999999999999999999999999876 5778899999999999999999999999999999876 46899999
Q ss_pred cCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHh
Q 010380 331 DGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTL 410 (512)
Q Consensus 331 SS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~ 410 (512)
||. ++..+.++...|++||+|++.|+++++.|+.+.||+||+|+||+|+|++....... .. .......+
T Consensus 179 sS~-~~~~~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~----~~------~~~~~~~~ 247 (285)
T 2c07_A 179 SSI-VGLTGNVGQANYSSSKAGVIGFTKSLAKELASRNITVNAIAPGFISSDMTDKISEQ----IK------KNIISNIP 247 (285)
T ss_dssp CCT-HHHHCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC-----CCHH----HH------HHHHTTCT
T ss_pred CCh-hhccCCCCCchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEEeCcEecCchhhcCHH----HH------HHHHhhCC
Confidence 987 56667788899999999999999999999999999999999999999986432111 00 00111234
Q ss_pred ccccccchhhhhhhhhcCChHHHHHHHHHHhccCc
Q 010380 411 VPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGR 445 (512)
Q Consensus 411 l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~ 445 (512)
++++..|+|+++++.||+++...+.++..+..+|+
T Consensus 248 ~~~~~~~~dvA~~~~~l~~~~~~~~~G~~i~v~gG 282 (285)
T 2c07_A 248 AGRMGTPEEVANLACFLSSDKSGYINGRVFVIDGG 282 (285)
T ss_dssp TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred CCCCCCHHHHHHHHHHHhCCCcCCCCCCEEEeCCC
Confidence 56788999999999999987654444444444444
|
| >4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-37 Score=301.87 Aligned_cols=239 Identities=17% Similarity=0.153 Sum_probs=195.0
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHH-CCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 175 AGPRNVVITGSTRGLGKALAREFLL-SGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 175 l~gk~vLVTGassGIG~aiA~~La~-~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
.++|++|||||++|||+++|++|++ .|++|++++|+++. ...++.++.+|++
T Consensus 2 ~~~k~vlITGas~gIG~~~a~~l~~~~g~~v~~~~~~~~~---------------------------~~~~~~~~~~Dv~ 54 (244)
T 4e4y_A 2 NAMANYLVTGGSKGIGKAVVELLLQNKNHTVINIDIQQSF---------------------------SAENLKFIKADLT 54 (244)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHTTSTTEEEEEEESSCCC---------------------------CCTTEEEEECCTT
T ss_pred CCCCeEEEeCCCChHHHHHHHHHHhcCCcEEEEecccccc---------------------------ccccceEEecCcC
Confidence 4678999999999999999999999 78999999987641 1235688999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
|+++++++++.+. ++++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|.|+++ |+||++||.
T Consensus 55 ~~~~v~~~~~~~~--~~~id~lv~nAg~~~-~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~---g~iv~~sS~ 128 (244)
T 4e4y_A 55 KQQDITNVLDIIK--NVSFDGIFLNAGILI-KGSIFDIDIESIKKVLDLNVWSSIYFIKGLENNLKVG---ASIVFNGSD 128 (244)
T ss_dssp CHHHHHHHHHHTT--TCCEEEEEECCCCCC-CBCTTTSCHHHHHHHHHHHTHHHHHHHHHTGGGEEEE---EEEEEECCG
T ss_pred CHHHHHHHHHHHH--hCCCCEEEECCccCC-CCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHhccC---cEEEEECCH
Confidence 9999999996553 789999999999987 5788999999999999999999999999999999753 799999998
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhc-CCHHHHHHHhcc
Q 010380 334 GSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIIC-ELPETVARTLVP 412 (512)
Q Consensus 334 ~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~-~~pe~vA~~~l~ 412 (512)
.+..+.++...|++||+|+++|+++|+.|++++||+||+|+||+|+|+|................. .........+++
T Consensus 129 -~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 207 (244)
T 4e4y_A 129 -QCFIAKPNSFAYTLSKGAIAQMTKSLALDLAKYQIRVNTVCPGTVDTDLYRNLIQKYANNVGISFDEAQKQEEKEFPLN 207 (244)
T ss_dssp -GGTCCCTTBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEESCBCCHHHHHHHHHHHHHHTCCHHHHHHHHHTTSTTS
T ss_pred -HHccCCCCCchhHHHHHHHHHHHHHHHHHHHHcCeEEEEEecCccCchhhHHHHHhhhhhcCCCHHHHHHHHhhcCCCC
Confidence 678888999999999999999999999999999999999999999999864321111000000000 001112234567
Q ss_pred ccccchhhhhhhhhcCChHHHHHHHHHHhccCccc
Q 010380 413 RIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWF 447 (512)
Q Consensus 413 r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~ 447 (512)
++..|+|+++++.||+++...+.++..+..||++.
T Consensus 208 r~~~p~dvA~~v~~l~s~~~~~itG~~i~vdGG~~ 242 (244)
T 4e4y_A 208 RIAQPQEIAELVIFLLSDKSKFMTGGLIPIDGGYT 242 (244)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred CCcCHHHHHHHHHHHhcCccccccCCeEeECCCcc
Confidence 88999999999999999988777777777777763
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-35 Score=296.40 Aligned_cols=196 Identities=26% Similarity=0.412 Sum_probs=175.6
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
++.+|+||||||++|||+++|++|+++|++|++++|+.++++++.+++.... .+.++.++.+|++
T Consensus 5 ~l~~k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~---------------~~~~~~~~~~Dl~ 69 (319)
T 3ioy_A 5 DFAGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEG---------------SGPEVMGVQLDVA 69 (319)
T ss_dssp CCTTCEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHT---------------CGGGEEEEECCTT
T ss_pred CCCCCEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC---------------CCCeEEEEECCCC
Confidence 5789999999999999999999999999999999999999988888876521 1237899999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-----CCCCeEE
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQ-----PKGGHIF 328 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~-----~~~g~IV 328 (512)
|+++++++++.+.+.++++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|.|.++ .+.|+||
T Consensus 70 ~~~~v~~~~~~~~~~~g~id~lv~nAg~~~-~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iV 148 (319)
T 3ioy_A 70 SREGFKMAADEVEARFGPVSILCNNAGVNL-FQPIEESSYDDWDWLLGVNLHGVVNGVTTFVPRMVERVKAGEQKGGHVV 148 (319)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEEEECCCCCC-CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSCCCCEEE
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEECCCcCC-CCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccCCCCcEEE
Confidence 999999999999999999999999999977 6889999999999999999999999999999999864 2478999
Q ss_pred eecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccC
Q 010380 329 NMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLS 386 (512)
Q Consensus 329 ~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~ 386 (512)
++||. ++..+.++...|++||+|+++|+++|+.|+.+.||+|++|+||+|+|++...
T Consensus 149 ~isS~-a~~~~~~~~~~Y~aSKaal~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~ 205 (319)
T 3ioy_A 149 NTASM-AAFLAAGSPGIYNTTKFAVRGLSESLHYSLLKYEIGVSVLCPGLVKSYIYAS 205 (319)
T ss_dssp EECCG-GGTCCCSSSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCCBC------
T ss_pred Eeccc-ccccCCCCCHHHHHHHHHHHHHHHHHHHHhhhcCCEEEEEEcCeEccCcccc
Confidence 99998 6788889999999999999999999999999999999999999999999754
|
| >3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-36 Score=300.28 Aligned_cols=240 Identities=16% Similarity=0.170 Sum_probs=198.1
Q ss_pred cCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEcc
Q 010380 172 HCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACD 251 (512)
Q Consensus 172 ~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~D 251 (512)
.+++++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++ +.++.++.||
T Consensus 25 ~~~l~~k~vlVTGas~GIG~aia~~l~~~G~~Vi~~~r~~~~~~~~~~~~--------------------~~~~~~~~~D 84 (281)
T 3ppi_A 25 IKQFEGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGKALADEL--------------------GNRAEFVSTN 84 (281)
T ss_dssp CGGGTTEEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH--------------------CTTEEEEECC
T ss_pred hhccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh--------------------CCceEEEEcC
Confidence 34688999999999999999999999999999999999998887766654 2468899999
Q ss_pred CCChhhHHHHHHHHHHHcCCCcccccc-cccCCCCCCC-----cCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhC----
Q 010380 252 VCEPADVQKLSNFAVNEFGSIDIWINN-AGTNKGFKPL-----LQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQ---- 321 (512)
Q Consensus 252 ltd~~sv~~~~~~i~~~~g~IDvLInn-AG~~~~~~~~-----~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~---- 321 (512)
++|+++++++++++ ++++++|+|||| ||+.. ...+ .+.+.++|++++++|+.++++++++++|.|.+.
T Consensus 85 l~~~~~v~~~~~~~-~~~~~id~lv~~aag~~~-~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ 162 (281)
T 3ppi_A 85 VTSEDSVLAAIEAA-NQLGRLRYAVVAHGGFGV-AQRIVQRDGSPADMGGFTKTIDLYLNGTYNVARLVAASIAAAEPRE 162 (281)
T ss_dssp TTCHHHHHHHHHHH-TTSSEEEEEEECCCCCCC-CCCSBCTTSCBCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSCCCT
T ss_pred CCCHHHHHHHHHHH-HHhCCCCeEEEccCcccc-cccccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccc
Confidence 99999999999999 888999999999 55544 3333 468899999999999999999999999999862
Q ss_pred -CCCCeEEeecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhc
Q 010380 322 -PKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIIC 400 (512)
Q Consensus 322 -~~~g~IV~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~ 400 (512)
.+.|+||++||. ++..+.++...|++||+|+++|+++|+.|++++||+||+|+||+|+|++.........
T Consensus 163 ~~~~g~iv~isS~-~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~-------- 233 (281)
T 3ppi_A 163 NGERGALVLTASI-AGYEGQIGQTAYAAAKAGVIGLTIAAARDLSSAGIRVNTIAPGTMKTPIMESVGEEAL-------- 233 (281)
T ss_dssp TSCCEEEEEECCG-GGTSCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTTCHHHH--------
T ss_pred cCCCeEEEEEecc-cccCCCCCCcccHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcCCchhhhcccHHHH--------
Confidence 257899999998 6788889999999999999999999999999999999999999999998754321111
Q ss_pred CCHHHHHHHhc-cccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 401 ELPETVARTLV-PRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 401 ~~pe~vA~~~l-~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
.......++ +++..|+|+++++.||+++. +.++..+..||++
T Consensus 234 --~~~~~~~~~~~~~~~pedvA~~v~~l~s~~--~~tG~~i~vdGG~ 276 (281)
T 3ppi_A 234 --AKFAANIPFPKRLGTPDEFADAAAFLLTNG--YINGEVMRLDGAQ 276 (281)
T ss_dssp --HHHHHTCCSSSSCBCHHHHHHHHHHHHHCS--SCCSCEEEESTTC
T ss_pred --HHHHhcCCCCCCCCCHHHHHHHHHHHHcCC--CcCCcEEEECCCc
Confidence 111222344 67889999999999998752 3344455555544
|
| >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-36 Score=292.45 Aligned_cols=243 Identities=24% Similarity=0.325 Sum_probs=198.6
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChh
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPA 256 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~ 256 (512)
+|+++||||++|||+++|++|+++|++|++++|+.++++++.+++.+. .+.++.++.+|++|++
T Consensus 2 ~k~vlItGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~----------------~~~~~~~~~~D~~~~~ 65 (250)
T 2cfc_A 2 SRVAIVTGASSGNGLAIATRFLARGDRVAALDLSAETLEETARTHWHA----------------YADKVLRVRADVADEG 65 (250)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHSTT----------------TGGGEEEEECCTTCHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh----------------cCCcEEEEEecCCCHH
Confidence 689999999999999999999999999999999988877666555111 2457889999999999
Q ss_pred hHHHHHHHHHHHcCCCcccccccccCCCCCC---CcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 257 DVQKLSNFAVNEFGSIDIWINNAGTNKGFKP---LLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 257 sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~---~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
+++++++++.++++++|+||||||+.. ..+ +.+.+.+++++++++|+.+++++++.++|.|+++ +.++||++||.
T Consensus 66 ~~~~~~~~~~~~~~~id~li~~Ag~~~-~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~iv~isS~ 143 (250)
T 2cfc_A 66 DVNAAIAATMEQFGAIDVLVNNAGITG-NSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQ-GAGVIVNIASV 143 (250)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCCCC-CTTCCSGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCG
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCCCC-CCCcchhhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhC-CCCEEEEECCh
Confidence 999999999999999999999999875 445 7888999999999999999999999999999876 46899999997
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhccc
Q 010380 334 GSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPR 413 (512)
Q Consensus 334 ~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~r 413 (512)
++..+.++...|++||++++.|+++++.|+.++||+|++|+||+|.|++...... ..... .......++++
T Consensus 144 -~~~~~~~~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~--~~~~~------~~~~~~~~~~~ 214 (250)
T 2cfc_A 144 -ASLVAFPGRSAYTTSKGAVLQLTKSVAVDYAGSGIRCNAVCPGMIETPMTQWRLD--QPELR------DQVLARIPQKE 214 (250)
T ss_dssp -GGTSCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTTHHHHT--SHHHH------HHHHTTCTTCS
T ss_pred -hhccCCCCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCccCccccccC--CHHHH------HHHHhcCCCCC
Confidence 5677788899999999999999999999999999999999999999998532100 00000 00111234667
Q ss_pred cccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 414 IRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 414 ~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
+..|+|+++.+.||+++...+.++..+..+|++
T Consensus 215 ~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG~ 247 (250)
T 2cfc_A 215 IGTAAQVADAVMFLAGEDATYVNGAALVMDGAY 247 (250)
T ss_dssp CBCHHHHHHHHHHHHSTTCTTCCSCEEEESTTG
T ss_pred CcCHHHHHHHHHHHcCchhhcccCCEEEECCce
Confidence 889999999999999876544444444444443
|
| >2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-36 Score=292.65 Aligned_cols=230 Identities=27% Similarity=0.411 Sum_probs=176.0
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEE-EcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEcc
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVA-SRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACD 251 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~-~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~D 251 (512)
|++++|+++||||++|||+++|++|+++|++|+++ .|+++.+++..+++.+ .+.++.++.+|
T Consensus 1 M~l~~~~vlItGasggiG~~~a~~l~~~G~~V~~~~~r~~~~~~~~~~~~~~-----------------~~~~~~~~~~D 63 (247)
T 2hq1_A 1 MQLKGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEFKA-----------------AGINVVVAKGD 63 (247)
T ss_dssp CTTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECTTCSHHHHHHHHHHH-----------------TTCCEEEEESC
T ss_pred CCCCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEcCcCHHHHHHHHHHHHh-----------------cCCcEEEEECC
Confidence 45789999999999999999999999999999998 6777777776666654 34678899999
Q ss_pred CCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeec
Q 010380 252 VCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD 331 (512)
Q Consensus 252 ltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vS 331 (512)
++|+++++++++++.+.++++|+||||||+.. ..++.+.+.++|++.+++|+.++++++++++|.|+++ +.++||++|
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~d~vi~~Ag~~~-~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~~~iv~~s 141 (247)
T 2hq1_A 64 VKNPEDVENMVKTAMDAFGRIDILVNNAGITR-DTLMLKMSEKDWDDVLNTNLKSAYLCTKAVSKIMLKQ-KSGKIINIT 141 (247)
T ss_dssp TTSHHHHHHHHHHHHHHHSCCCEEEECC----------------CHHHHHHTHHHHHHHHHHHHHHHHHH-TCEEEEEEC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCEEEECCCCCC-CCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCcEEEEEc
Confidence 99999999999999999999999999999876 5677888999999999999999999999999999876 468999999
Q ss_pred CCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhc
Q 010380 332 GAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLV 411 (512)
Q Consensus 332 S~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l 411 (512)
|. ++..+.++...|++||++++.|+++++.|+.+.||+||+|+||++.|++....... ... ......++
T Consensus 142 S~-~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~----~~~------~~~~~~~~ 210 (247)
T 2hq1_A 142 SI-AGIIGNAGQANYAASKAGLIGFTKSIAKEFAAKGIYCNAVAPGIIKTDMTDVLPDK----VKE------MYLNNIPL 210 (247)
T ss_dssp C----------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTSCHH----HHH------HHHTTSTT
T ss_pred Ch-hhccCCCCCcHhHHHHHHHHHHHHHHHHHHHHcCcEEEEEEEEEEeccchhhcchH----HHH------HHHhhCCC
Confidence 87 56667788899999999999999999999999999999999999999986432110 000 01112345
Q ss_pred cccccchhhhhhhhhcCChHH
Q 010380 412 PRIRVVKGSGKAINYLTPPRI 432 (512)
Q Consensus 412 ~r~~~~~~va~~v~~L~s~~~ 432 (512)
+++..|+|+++++.|++++..
T Consensus 211 ~~~~~~~dva~~~~~l~~~~~ 231 (247)
T 2hq1_A 211 KRFGTPEEVANVVGFLASDDS 231 (247)
T ss_dssp SSCBCHHHHHHHHHHHHSGGG
T ss_pred CCCCCHHHHHHHHHHHcCccc
Confidence 677889999999999988654
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-35 Score=291.55 Aligned_cols=244 Identities=23% Similarity=0.310 Sum_probs=199.3
Q ss_pred ccCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceE-EEEE
Q 010380 171 EHCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKV-AGIA 249 (512)
Q Consensus 171 ~~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v-~~v~ 249 (512)
..+++++|+++||||++|||+++|++|+++|++|++++|+.+++++..+++ +.++ .++.
T Consensus 5 ~~~~~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~--------------------~~~~~~~~~ 64 (254)
T 2wsb_A 5 TVFRLDGACAAVTGAGSGIGLEICRAFAASGARLILIDREAAALDRAAQEL--------------------GAAVAARIV 64 (254)
T ss_dssp TTTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH--------------------GGGEEEEEE
T ss_pred cccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--------------------cccceeEEE
Confidence 345689999999999999999999999999999999999988776655544 1345 7899
Q ss_pred ccCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEe
Q 010380 250 CDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFN 329 (512)
Q Consensus 250 ~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~ 329 (512)
+|++|+++++++++++.+ ++++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|.|+++ +.++||+
T Consensus 65 ~D~~~~~~~~~~~~~~~~-~~~id~li~~Ag~~~-~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~~~iv~ 141 (254)
T 2wsb_A 65 ADVTDAEAMTAAAAEAEA-VAPVSILVNSAGIAR-LHDALETDDATWRQVMAVNVDGMFWASRAFGRAMVAR-GAGAIVN 141 (254)
T ss_dssp CCTTCHHHHHHHHHHHHH-HSCCCEEEECCCCCC-CBCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEE
T ss_pred EecCCHHHHHHHHHHHHh-hCCCcEEEECCccCC-CCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEE
Confidence 999999999999999988 899999999999876 5778889999999999999999999999999999876 5789999
Q ss_pred ecCCCCCCCCCCCc--chhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHH
Q 010380 330 MDGAGSGGSSTPLT--AVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVA 407 (512)
Q Consensus 330 vSS~~a~~~~~p~~--~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA 407 (512)
+||. .+..+.+.. ..|++||++++.++++++.|+.++||+|++|+||+|.|++...... ..... .....
T Consensus 142 isS~-~~~~~~~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~Pg~v~t~~~~~~~~--~~~~~------~~~~~ 212 (254)
T 2wsb_A 142 LGSM-SGTIVNRPQFASSYMASKGAVHQLTRALAAEWAGRGVRVNALAPGYVATEMTLKMRE--RPELF------ETWLD 212 (254)
T ss_dssp ECCG-GGTSCCSSSCBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSHHHHHHHT--CHHHH------HHHHH
T ss_pred Eecc-hhccCCCCCcchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEEecccCchhhhcccc--ChHHH------HHHHh
Confidence 9997 555666666 8999999999999999999999999999999999999998532100 00000 01112
Q ss_pred HHhccccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 408 RTLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 408 ~~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
..+++++..|+|+++++.||+++...+.++..+..+|++
T Consensus 213 ~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG~ 251 (254)
T 2wsb_A 213 MTPMGRCGEPSEIAAAALFLASPAASYVTGAILAVDGGY 251 (254)
T ss_dssp TSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred cCCCCCCCCHHHHHHHHHHHhCcccccccCCEEEECCCE
Confidence 234567889999999999999876544444445445443
|
| >3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-35 Score=294.78 Aligned_cols=245 Identities=21% Similarity=0.271 Sum_probs=202.1
Q ss_pred cCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEcc
Q 010380 172 HCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACD 251 (512)
Q Consensus 172 ~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~D 251 (512)
.+++++|++|||||++|||+++|++|+++|++|++++|+.+.+++..+++.+ .+.++.++.+|
T Consensus 29 ~~~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~-----------------~~~~~~~~~~D 91 (279)
T 3ctm_A 29 LFSLKGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEKAEHLQKT-----------------YGVHSKAYKCN 91 (279)
T ss_dssp GGCCTTCEEEETTTTSSHHHHHHHHHHHHTCEEEEEESSSCCHHHHHHHHHH-----------------HCSCEEEEECC
T ss_pred ccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-----------------cCCcceEEEee
Confidence 3568999999999999999999999999999999999998877766665543 24578899999
Q ss_pred CCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCc-CCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEee
Q 010380 252 VCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLL-QFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNM 330 (512)
Q Consensus 252 ltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~-~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~v 330 (512)
++|+++++++++++.+.++++|+||||||+.....++. +.+.++|++++++|+.|++++++.++|.|+++ +.++||++
T Consensus 92 l~~~~~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~~~iv~i 170 (279)
T 3ctm_A 92 ISDPKSVEETISQQEKDFGTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCSHNIGKIFKKN-GKGSLIIT 170 (279)
T ss_dssp TTCHHHHHHHHHHHHHHHSCCSEEEECGGGSTTC--CCCSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEE
T ss_pred cCCHHHHHHHHHHHHHHhCCCCEEEECCcccccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCeEEEE
Confidence 99999999999999999999999999999876225666 88899999999999999999999999999876 56899999
Q ss_pred cCCCCCCCC--CCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHH
Q 010380 331 DGAGSGGSS--TPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVAR 408 (512)
Q Consensus 331 SS~~a~~~~--~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~ 408 (512)
||. ++..+ .++...|++||++++.|+++++.|+++.| +||+|+||+|+|++...... ... ......
T Consensus 171 sS~-~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~-~v~~v~Pg~v~t~~~~~~~~----~~~------~~~~~~ 238 (279)
T 3ctm_A 171 SSI-SGKIVNIPQLQAPYNTAKAACTHLAKSLAIEWAPFA-RVNTISPGYIDTDITDFASK----DMK------AKWWQL 238 (279)
T ss_dssp CCC-TTSCC---CCHHHHHHHHHHHHHHHHHHHHHTTTTC-EEEEEEECSBSSTTTSSCCH----HHH------HHHHHH
T ss_pred Cch-HhccCCCCCCcccHHHHHHHHHHHHHHHHHHhcccC-CEEEEeccCCccccccccCh----HHH------HHHHHh
Confidence 997 45555 67888999999999999999999999999 99999999999998742111 100 111223
Q ss_pred HhccccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 409 TLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 409 ~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
.+++++..|+|+++.+.||+++...+.++..+..+|++
T Consensus 239 ~p~~~~~~~~dvA~~~~~l~s~~~~~~tG~~i~vdgG~ 276 (279)
T 3ctm_A 239 TPLGREGLTQELVGGYLYLASNASTFTTGSDVVIDGGY 276 (279)
T ss_dssp STTCSCBCGGGTHHHHHHHHSGGGTTCCSCEEEESTTC
T ss_pred CCccCCcCHHHHHHHHHHHhCccccCccCCEEEECCCe
Confidence 45678899999999999999987655555555555554
|
| >1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-35 Score=290.04 Aligned_cols=244 Identities=22% Similarity=0.301 Sum_probs=201.1
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
++++|+++||||++|||+++|++|+++|++|++++|+.+.+++..+++.. ..++.++.+|++
T Consensus 3 ~~~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~------------------~~~~~~~~~D~~ 64 (251)
T 1zk4_A 3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGT------------------PDQIQFFQHDSS 64 (251)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC------------------TTTEEEEECCTT
T ss_pred CCCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhc------------------cCceEEEECCCC
Confidence 57899999999999999999999999999999999998877665554421 146888999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
|+++++++++.+.+.++++|+||||||+.. ..++.+.+.++|++++++|+.|++++++.++|.|++++.+++||++||.
T Consensus 65 ~~~~~~~~~~~~~~~~~~id~li~~Ag~~~-~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~isS~ 143 (251)
T 1zk4_A 65 DEDGWTKLFDATEKAFGPVSTLVNNAGIAV-NKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSI 143 (251)
T ss_dssp CHHHHHHHHHHHHHHHSSCCEEEECCCCCC-CCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCG
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCCCCC-CCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCCc
Confidence 999999999999999999999999999876 5778889999999999999999999999999999876333899999998
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHHhC--CCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhc
Q 010380 334 GSGGSSTPLTAVYGSTKCGLRQLQASLFKESK--RSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLV 411 (512)
Q Consensus 334 ~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~--~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l 411 (512)
.+..+.++...|++||++++.|+++++.|+. +.||+|++|+||+|.|++....... ...... ....++
T Consensus 144 -~~~~~~~~~~~Y~~sK~a~~~~~~~~a~e~~~~~~~i~v~~v~Pg~v~t~~~~~~~~~---~~~~~~------~~~~~~ 213 (251)
T 1zk4_A 144 -EGFVGDPSLGAYNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPLVDDLPGA---EEAMSQ------RTKTPM 213 (251)
T ss_dssp -GGTSCCTTCHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEECCBCCHHHHTSTTH---HHHHTS------TTTCTT
T ss_pred -hhccCCCCCccchHHHHHHHHHHHHHHHHhcccCCCeEEEEEeeCcCcchhhhhcCch---hhhHHH------hhcCCC
Confidence 5677788899999999999999999999988 8899999999999999986532110 000000 012345
Q ss_pred cccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 412 PRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 412 ~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
+++..|+|+++++.||+++...+.++..+..+|++
T Consensus 214 ~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG~ 248 (251)
T 1zk4_A 214 GHIGEPNDIAYICVYLASNESKFATGSEFVVDGGY 248 (251)
T ss_dssp SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred CCCcCHHHHHHHHHHHcCcccccccCcEEEECCCc
Confidence 67889999999999999876544444445455544
|
| >1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-36 Score=290.35 Aligned_cols=239 Identities=24% Similarity=0.407 Sum_probs=197.8
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEE-EcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCCh
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSGDRVVVA-SRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEP 255 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~-~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~ 255 (512)
||+++||||++|||+++|++|+++|++|+++ +|+.++++++.+++.+ .+.++.++.+|++|+
T Consensus 1 ~k~vlVTGasggiG~~la~~l~~~G~~v~~~~~r~~~~~~~~~~~~~~-----------------~~~~~~~~~~D~~~~ 63 (244)
T 1edo_A 1 SPVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEA-----------------YGGQAITFGGDVSKE 63 (244)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH-----------------HTCEEEEEECCTTSH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHh-----------------cCCcEEEEeCCCCCH
Confidence 5899999999999999999999999999984 8988888777766654 245788999999999
Q ss_pred hhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCC
Q 010380 256 ADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGS 335 (512)
Q Consensus 256 ~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a 335 (512)
++++++++++.++++++|+||||||+.. ..++.+.+.++|++++++|+.++++++++++|.|.++ +.++||++||. +
T Consensus 64 ~~~~~~~~~~~~~~g~id~li~~Ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~iv~~sS~-~ 140 (244)
T 1edo_A 64 ADVEAMMKTAIDAWGTIDVVVNNAGITR-DTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKK-RKGRIINIASV-V 140 (244)
T ss_dssp HHHHHHHHHHHHHSSCCSEEEECCCCCC-CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCT-H
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCCCC-CcCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhc-CCCEEEEECCh-h
Confidence 9999999999999999999999999876 5778889999999999999999999999999999876 56899999987 4
Q ss_pred CCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhccccc
Q 010380 336 GGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPRIR 415 (512)
Q Consensus 336 ~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~r~~ 415 (512)
+..+.++...|++||++++.|+++++.|+.+.||+|++|+||+|.|++.......... ......+++++.
T Consensus 141 ~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~----------~~~~~~~~~~~~ 210 (244)
T 1edo_A 141 GLIGNIGQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMTAKLGEDMEK----------KILGTIPLGRTG 210 (244)
T ss_dssp HHHCCTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTTCHHHHH----------HHHTSCTTCSCB
T ss_pred hcCCCCCCccchhhHHHHHHHHHHHHHHhhhcCCEEEEEeeCccccchhhhcChHHHH----------HHhhcCCCCCCC
Confidence 5567788899999999999999999999999999999999999999986432111000 011123456778
Q ss_pred cchhhhhhhhhcC-ChHHHHHHHHHHhccCc
Q 010380 416 VVKGSGKAINYLT-PPRILLALVTAWLRRGR 445 (512)
Q Consensus 416 ~~~~va~~v~~L~-s~~~~~~~~~~~~~~g~ 445 (512)
.|+|+++++.||+ ++...+.++..+..+|+
T Consensus 211 ~~~dva~~~~~l~~~~~~~~~~G~~~~v~gG 241 (244)
T 1edo_A 211 QPENVAGLVEFLALSPAASYITGQAFTIDGG 241 (244)
T ss_dssp CHHHHHHHHHHHHHCSGGGGCCSCEEEESTT
T ss_pred CHHHHHHHHHHHhCCCccCCcCCCEEEeCCC
Confidence 8999999999998 66543333444444443
|
| >3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu P.falciparum; HET: NAD FT1; 1.96A {Plasmodium falciparum} SCOP: c.2.1.2 PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A* 3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A* 2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A* 2foi_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-37 Score=316.54 Aligned_cols=264 Identities=14% Similarity=0.093 Sum_probs=202.0
Q ss_pred CCCEEEEECCCC--hHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 176 GPRNVVITGSTR--GLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 176 ~gk~vLVTGass--GIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
++|++|||||++ |||+++|++|+++|++|++++|++... +...-.+........ ..........+.++.||++
T Consensus 1 ~~k~~lITGas~~~GIG~aiA~~la~~G~~Vv~~~~~~~~~--l~~r~~~~~~~~~~~---~~~~~~~~~~~~~~~~Dv~ 75 (329)
T 3lt0_A 1 NEDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYN--IFMKNYKNGKFDNDM---IIDKDKKMNILDMLPFDAS 75 (329)
T ss_dssp CCCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECHHHHH--HHHHHHHTTTTTGGG---BCSSSCBCCEEEEEECCTT
T ss_pred CCcEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecCcccc--ccccchHHHHHHHHH---HHhhccccccccccccccc
Confidence 479999999986 999999999999999999988875320 111101100000000 0000112245788999999
Q ss_pred Ch--h------------------hHHHHHHHHHHHcCCCcccccccccCC-CCCCCcCCCHHHHHHHHHhhhhhHHHHHH
Q 010380 254 EP--A------------------DVQKLSNFAVNEFGSIDIWINNAGTNK-GFKPLLQFTNEEIEQIVSTNLVGSILCTR 312 (512)
Q Consensus 254 d~--~------------------sv~~~~~~i~~~~g~IDvLInnAG~~~-~~~~~~~~s~e~~~~~~~vNv~g~~~l~k 312 (512)
+. + +++++++++.+++|+||+||||||+.. ...++.+.+.++|++++++|+.|++++++
T Consensus 76 ~~~~~~~~~~~~~~~~~Dlsd~~~v~~~~~~~~~~~g~iDilVnnAGi~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~ 155 (329)
T 3lt0_A 76 FDTANDIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCK 155 (329)
T ss_dssp CSSGGGCCHHHHTSHHHHTCCSCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHH
T ss_pred ccchhhhhhhhcccccccccCHHHHHHHHHHHHHhcCCCcEEEECCcccccCCCCcccCCHHHHHHHHHHHhHHHHHHHH
Confidence 88 8 999999999999999999999999752 35788999999999999999999999999
Q ss_pred HHHHHHHhCCCCCeEEeecCCCCCCCCCCCcc-hhhHHHHHHHHHHHHHHHHhCC-CCeEEEEEeCCcccCCcccCCcch
Q 010380 313 EAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTA-VYGSTKCGLRQLQASLFKESKR-SKVGVHTASPGMVLTDLLLSGSTI 390 (512)
Q Consensus 313 ~~lp~m~~~~~~g~IV~vSS~~a~~~~~p~~~-~Y~aSKaAl~~l~~sLa~El~~-~GIrVn~V~PG~V~T~~~~~~~~~ 390 (512)
+++|+|+++ |+||++||. ++..+.|+.. .|++||+|+.+|+++|+.|+++ +||+||+|+||+|+|+|.......
T Consensus 156 ~~~p~m~~~---g~Iv~isS~-~~~~~~~~~~~~Y~asKaal~~~~~~la~el~~~~gI~vn~v~PG~v~T~~~~~~~~~ 231 (329)
T 3lt0_A 156 YFVNIMKPQ---SSIISLTYH-ASQKVVPGYGGGMSSAKAALESDTRVLAYHLGRNYNIRINTISAGPLKSRAATAINKL 231 (329)
T ss_dssp HHGGGEEEE---EEEEEEECG-GGTSCCTTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCHHHHTCC--
T ss_pred HHHHHHhhC---CeEEEEeCc-cccCCCCcchHHHHHHHHHHHHHHHHHHHHhCCccCeEEEEEecceeechhHhhhhhh
Confidence 999999864 899999998 6778888886 9999999999999999999998 899999999999999997653211
Q ss_pred hhh-------------hh----hhhhcC------------------CHHHHHHHhccccccchhhhhhhhhcCChHHHHH
Q 010380 391 QNK-------------QM----FNIICE------------------LPETVARTLVPRIRVVKGSGKAINYLTPPRILLA 435 (512)
Q Consensus 391 ~~~-------------~~----~~~~~~------------------~pe~vA~~~l~r~~~~~~va~~v~~L~s~~~~~~ 435 (512)
... .. ...... ........+++++..|++++.++.||+++...+.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~peevA~~v~fL~s~~a~~i 311 (329)
T 3lt0_A 232 NNTYENNTNQNKNRNRHDVHNIMNNSGEKEEKKISASQNYTFIDYAIEYSEKYAPLRQKLLSTDIGSVASFLLSRESRAI 311 (329)
T ss_dssp ----------------------------------------CHHHHHHHHHHHHSSSCSCCCHHHHHHHHHHHHSGGGTTC
T ss_pred cccccccccccccccccccchhhcccccchhhhhhhhcccchhHHHHHHHhhcCcccCcCCHHHHHHHHHHHhCchhccc
Confidence 000 00 000000 0112344678899999999999999999998888
Q ss_pred HHHHHhccCcccc
Q 010380 436 LVTAWLRRGRWFD 448 (512)
Q Consensus 436 ~~~~~~~~g~~~~ 448 (512)
++..+..||++..
T Consensus 312 tG~~i~vdGG~~~ 324 (329)
T 3lt0_A 312 TGQTIYVDNGLNI 324 (329)
T ss_dssp CSCEEEESTTGGG
T ss_pred cCcEEEEcCCeeE
Confidence 8888888887743
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-35 Score=296.64 Aligned_cols=249 Identities=21% Similarity=0.245 Sum_probs=203.1
Q ss_pred ccCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEc
Q 010380 171 EHCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIAC 250 (512)
Q Consensus 171 ~~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~ 250 (512)
+..++++|+++||||++|||+++|++|+++|++|++++|+.+++++..+++.+. .+.++.++.+
T Consensus 20 ~~~~l~~k~vlITGasggiG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~----------------~~~~~~~~~~ 83 (302)
T 1w6u_A 20 PPNSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQ----------------TGNKVHAIQC 83 (302)
T ss_dssp CTTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH----------------HSSCEEEEEC
T ss_pred CcccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh----------------cCCceEEEEe
Confidence 345689999999999999999999999999999999999998888877777552 1457899999
Q ss_pred cCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEee
Q 010380 251 DVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNM 330 (512)
Q Consensus 251 Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~v 330 (512)
|++|+++++++++.+.+.++++|+||||||+.. ..++.+.+.++|++.+++|+.++++++++++|.|.++.+.++||++
T Consensus 84 Dl~~~~~~~~~~~~~~~~~g~id~li~~Ag~~~-~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~i 162 (302)
T 1w6u_A 84 DVRDPDMVQNTVSELIKVAGHPNIVINNAAGNF-ISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSI 162 (302)
T ss_dssp CTTCHHHHHHHHHHHHHHTCSCSEEEECCCCCC-CSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCC-CCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 999999999999999999999999999999876 5778889999999999999999999999999999855467899999
Q ss_pred cCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCC-cccCCcchhhhhhhhhhcCCHHHHHHH
Q 010380 331 DGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTD-LLLSGSTIQNKQMFNIICELPETVART 409 (512)
Q Consensus 331 SS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~-~~~~~~~~~~~~~~~~~~~~pe~vA~~ 409 (512)
||. .+..+.++...|++||+|++.|+++++.|++++||+|++|+||+|.|+ +......... .. .......
T Consensus 163 sS~-~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~-~~-------~~~~~~~ 233 (302)
T 1w6u_A 163 TTI-YAETGSGFVVPSASAKAGVEAMSKSLAAEWGKYGMRFNVIQPGPIKTKGAFSRLDPTGT-FE-------KEMIGRI 233 (302)
T ss_dssp CCT-HHHHCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC------CCTTSH-HH-------HHHHTTC
T ss_pred ccc-ccccCCCCcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeccCCCcchhhhcccchh-hH-------HHHHhcC
Confidence 987 566677888999999999999999999999999999999999999998 4322111000 00 0111223
Q ss_pred hccccccchhhhhhhhhcCChHHHHHHHHHHhccCc
Q 010380 410 LVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGR 445 (512)
Q Consensus 410 ~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~ 445 (512)
+++++..|+|+++++.||+++...+.++..+..+|+
T Consensus 234 p~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg 269 (302)
T 1w6u_A 234 PCGRLGTVEELANLAAFLCSDYASWINGAVIKFDGG 269 (302)
T ss_dssp TTSSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred CcCCCCCHHHHHHHHHHHcCCcccccCCCEEEECCC
Confidence 456788999999999999987654444444444444
|
| >1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-35 Score=303.76 Aligned_cols=255 Identities=23% Similarity=0.268 Sum_probs=205.8
Q ss_pred cCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEE---------EcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccC
Q 010380 172 HCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVA---------SRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVH 242 (512)
Q Consensus 172 ~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~---------~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g 242 (512)
.+++++|++|||||++|||+++|++|+++|++|+++ +|+.++++++.+++.+ .+
T Consensus 4 ~~~l~gk~~lVTGas~GIG~~~a~~La~~Ga~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~-----------------~~ 66 (319)
T 1gz6_A 4 PLRFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRR-----------------RG 66 (319)
T ss_dssp CCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHH-----------------TT
T ss_pred CCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCcccccccCCHHHHHHHHHHHHh-----------------hC
Confidence 367899999999999999999999999999999996 4567777777777754 12
Q ss_pred ceEEEEEccCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCC
Q 010380 243 AKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQP 322 (512)
Q Consensus 243 ~~v~~v~~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~ 322 (512)
.. ..+|++|.++++++++++.+.++++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|+|+++
T Consensus 67 ~~---~~~D~~~~~~~~~~~~~~~~~~g~iD~lVnnAG~~~-~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~- 141 (319)
T 1gz6_A 67 GK---AVANYDSVEAGEKLVKTALDTFGRIDVVVNNAGILR-DRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQ- 141 (319)
T ss_dssp CE---EEEECCCGGGHHHHHHHHHHHTSCCCEEEECCCCCC-CCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred Ce---EEEeCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCC-CCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-
Confidence 22 358999999999999999999999999999999976 5678889999999999999999999999999999876
Q ss_pred CCCeEEeecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCC
Q 010380 323 KGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICEL 402 (512)
Q Consensus 323 ~~g~IV~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~ 402 (512)
+.|+||++||. ++..+.++...|++||+|++.|+++|+.|++++||+||+|+||++ |++.....
T Consensus 142 ~~grIV~vsS~-~~~~~~~~~~~Y~aSK~a~~~~~~~la~el~~~gI~vn~v~PG~~-t~~~~~~~-------------- 205 (319)
T 1gz6_A 142 NYGRIIMTASA-SGIYGNFGQANYSAAKLGLLGLANTLVIEGRKNNIHCNTIAPNAG-SRMTETVM-------------- 205 (319)
T ss_dssp TCEEEEEECCH-HHHHCCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEEECC-STTTGGGS--------------
T ss_pred CCCEEEEECCh-hhccCCCCCHHHHHHHHHHHHHHHHHHHHhcccCEEEEEEeCCCc-cccccccC--------------
Confidence 56899999987 455667788999999999999999999999999999999999998 88753210
Q ss_pred HHHHHHHhccccccchhhhhhhhhcCChHHHHHHHHHHhccCccccc-------------chhhhhHHHHHHHHHHHHHc
Q 010380 403 PETVARTLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWFDD-------------QGRALYAAEADRIRNWAENR 469 (512)
Q Consensus 403 pe~vA~~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~~~-------------~~~~~~~~~~~rl~~w~~~~ 469 (512)
++... ....|++++..+.||+++.. +.++..+..+|++... ...+.+....+++|++.++.
T Consensus 206 ~~~~~-----~~~~p~dvA~~~~~l~s~~~-~~tG~~~~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lw~~~~~~ 279 (319)
T 1gz6_A 206 PEDLV-----EALKPEYVAPLVLWLCHESC-EENGGLFEVGAGWIGKLRWERTLGAIVRKRNQPMTPEAVRDNWVKICDF 279 (319)
T ss_dssp CHHHH-----HHSCGGGTHHHHHHHTSTTC-CCCSCEEEEETTEEEEEEEEECCCEECCBTTBCCCHHHHHHTHHHHTCC
T ss_pred Chhhh-----ccCCHHHHHHHHHHHhCchh-hcCCCEEEECCCeEEEEeeeeccceeccCCCCCCCHHHHHHHHHHhhcc
Confidence 11111 13578899999999998643 3345555555554321 12335677788999888775
Q ss_pred c
Q 010380 470 A 470 (512)
Q Consensus 470 ~ 470 (512)
.
T Consensus 280 ~ 280 (319)
T 1gz6_A 280 S 280 (319)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-36 Score=294.74 Aligned_cols=234 Identities=16% Similarity=0.199 Sum_probs=194.2
Q ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhh
Q 010380 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPAD 257 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~s 257 (512)
|++|||||++|||+++|++|+++|++|++++|+.++++++.+ +.+. +.++..+ |+++
T Consensus 2 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~-l~~~-----------------~~~~~~~-----d~~~ 58 (254)
T 1zmt_A 2 STAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEA-FAET-----------------YPQLKPM-----SEQE 58 (254)
T ss_dssp CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHH-HHHH-----------------CTTSEEC-----CCCS
T ss_pred eEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-HHhc-----------------CCcEEEE-----CHHH
Confidence 689999999999999999999999999999999888776554 5431 2233333 7888
Q ss_pred HHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCCC
Q 010380 258 VQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGG 337 (512)
Q Consensus 258 v~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~~ 337 (512)
++++++++.++++++|+||||||+.....++.+.+.++|++++++|+.|+++++++++|.|+++ +.|+||++||. .+.
T Consensus 59 v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv~isS~-~~~ 136 (254)
T 1zmt_A 59 PAELIEAVTSAYGQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKR-KSGHIIFITSA-TPF 136 (254)
T ss_dssp HHHHHHHHHHHHSCCCEEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEECCS-TTT
T ss_pred HHHHHHHHHHHhCCCCEEEECCCcCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCcEEEEECCc-ccc
Confidence 9999999999999999999999987225788899999999999999999999999999999876 46899999998 677
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcc---------cCCcccCCcchhhhhhhhhhcCCHHHHHH
Q 010380 338 SSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMV---------LTDLLLSGSTIQNKQMFNIICELPETVAR 408 (512)
Q Consensus 338 ~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V---------~T~~~~~~~~~~~~~~~~~~~~~pe~vA~ 408 (512)
.+.++...|++||+|+++|+++++.|++++||+||+|+||+| +|++.... .... ......
T Consensus 137 ~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~~~~~~~~~~T~~~~~~-----~~~~------~~~~~~ 205 (254)
T 1zmt_A 137 GPWKELSTYTSARAGACTLANALSKELGEYNIPVFAIGPNYLHSEDSPYFYPTEPWKTN-----PEHV------AHVKKV 205 (254)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCCEEEEEESSBCCBTCCSSCBHHHHTTC-----HHHH------HHHHHH
T ss_pred cCCCCchHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCccccccccccCCCcccccC-----hHHH------HHHhcc
Confidence 788899999999999999999999999999999999999999 66654221 0000 111233
Q ss_pred HhccccccchhhhhhhhhcCChHHHHHHHHHHhccCccc
Q 010380 409 TLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWF 447 (512)
Q Consensus 409 ~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~ 447 (512)
.+++++..|+|+++.+.||+++...+.++..+..||++.
T Consensus 206 ~p~~~~~~p~dvA~~v~~l~s~~~~~~tG~~~~vdgG~~ 244 (254)
T 1zmt_A 206 TALQRLGTQKELGELVAFLASGSCDYLTGQVFWLAGGFP 244 (254)
T ss_dssp SSSSSCBCHHHHHHHHHHHHTTSCGGGTTCEEEESTTCC
T ss_pred CCCCCCcCHHHHHHHHHHHhCcccCCccCCEEEECCCch
Confidence 467788999999999999999877666777777777663
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-35 Score=288.95 Aligned_cols=243 Identities=25% Similarity=0.341 Sum_probs=200.0
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
+++++|+++||||++|||+++|++|+++|++|++++|+.++++++.+++.+. .+.++.++.+|+
T Consensus 3 ~~~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~----------------~~~~~~~~~~D~ 66 (248)
T 2pnf_A 3 IKLQGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANK----------------YGVKAHGVEMNL 66 (248)
T ss_dssp CCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHH----------------HCCCEEEEECCT
T ss_pred cccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhh----------------cCCceEEEEccC
Confidence 4578999999999999999999999999999999999998887777666542 135788999999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|+++++++++++.+.++++|+||||||... ..++.+.+.+++++.+++|+.++++++++++|.|+++ +.++||++||
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~d~vi~~Ag~~~-~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~~~iv~~sS 144 (248)
T 2pnf_A 67 LSEESINKAFEEIYNLVDGIDILVNNAGITR-DKLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQ-RWGRIVNISS 144 (248)
T ss_dssp TCHHHHHHHHHHHHHHSSCCSEEEECCCCCC-CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHCHHHHHH-TCEEEEEECC
T ss_pred CCHHHHHHHHHHHHHhcCCCCEEEECCCCCC-CCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhc-CCcEEEEEcc
Confidence 9999999999999999999999999999876 5678889999999999999999999999999999876 5689999998
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhcc
Q 010380 333 AGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVP 412 (512)
Q Consensus 333 ~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~ 412 (512)
. .+..+.++...|++||++++.|++.++.|+.+.||+|++|+||++.|++...... ... .......+.+
T Consensus 145 ~-~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~Pg~v~t~~~~~~~~----~~~------~~~~~~~~~~ 213 (248)
T 2pnf_A 145 V-VGFTGNVGQVNYSTTKAGLIGFTKSLAKELAPRNVLVNAVAPGFIETDMTAVLSE----EIK------QKYKEQIPLG 213 (248)
T ss_dssp H-HHHHCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGGGSCH----HHH------HHHHHTCTTS
T ss_pred H-HhcCCCCCCchHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeceecCchhhhccH----HHH------HHHHhcCCCC
Confidence 7 4555677889999999999999999999999999999999999999998643211 000 0011123456
Q ss_pred ccccchhhhhhhhhcCChHHHHHHHHHHhccC
Q 010380 413 RIRVVKGSGKAINYLTPPRILLALVTAWLRRG 444 (512)
Q Consensus 413 r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g 444 (512)
++..|+++++++.|++++...+.++..+..+|
T Consensus 214 ~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~g 245 (248)
T 2pnf_A 214 RFGSPEEVANVVLFLCSELASYITGEVIHVNG 245 (248)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred CccCHHHHHHHHHHHhCchhhcCCCcEEEeCC
Confidence 77889999999999988754333333333333
|
| >2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-35 Score=292.34 Aligned_cols=251 Identities=17% Similarity=0.230 Sum_probs=196.7
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
++++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+.... ......++.++.+|++
T Consensus 4 ~~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~D~~ 73 (264)
T 2pd6_A 4 RLRSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGGPGSK----------EGPPRGNHAAFQADVS 73 (264)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTC----------------------CCEEEECCTT
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCcc----------ccccCcceEEEEecCC
Confidence 478999999999999999999999999999999999988877666555331000 0001146888999999
Q ss_pred ChhhHHHHHHHHHHHcCCC-cccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 254 EPADVQKLSNFAVNEFGSI-DIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~I-DvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
|+++++++++.+.+.++++ |+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|.|.+++..|+||++||
T Consensus 74 ~~~~~~~~~~~~~~~~g~i~d~vi~~Ag~~~-~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS 152 (264)
T 2pd6_A 74 EARAARCLLEQVQACFSRPPSVVVSCAGITQ-DEFLLHMSEDDWDKVIAVNLKGTFLVTQAAAQALVSNGCRGSIINISS 152 (264)
T ss_dssp SHHHHHHHHHHHHHHHSSCCSEEEECCCCCC-CBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred CHHHHHHHHHHHHHHhCCCCeEEEECCCcCC-CcchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCceEEEECC
Confidence 9999999999999999999 99999999876 577888999999999999999999999999999987632689999998
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhcc
Q 010380 333 AGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVP 412 (512)
Q Consensus 333 ~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~ 412 (512)
. .+..+.++...|++||++++.|++.++.|++++||+|++|+||+|.|++....... ..... ....+++
T Consensus 153 ~-~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~----~~~~~------~~~~~~~ 221 (264)
T 2pd6_A 153 I-VGKVGNVGQTNYAASKAGVIGLTQTAARELGRHGIRCNSVLPGFIATPMTQKVPQK----VVDKI------TEMIPMG 221 (264)
T ss_dssp T-HHHHCCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSCC--------------CT------GGGCTTC
T ss_pred h-hhccCCCCChhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeecccccchhhcCHH----HHHHH------HHhCCCC
Confidence 7 56667788999999999999999999999999999999999999999986431110 00000 0112356
Q ss_pred ccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 413 RIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 413 r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
++..|+|+++.+.+++++...+.++..+..+|++
T Consensus 222 ~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~ 255 (264)
T 2pd6_A 222 HLGDPEDVADVVAFLASEDSGYITGTSVEVTGGL 255 (264)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTC
T ss_pred CCCCHHHHHHHHHHHcCCcccCCCCCEEEECCCc
Confidence 6788999999999998876544444444444443
|
| >2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-35 Score=290.30 Aligned_cols=248 Identities=23% Similarity=0.333 Sum_probs=200.1
Q ss_pred ccCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEc
Q 010380 171 EHCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIAC 250 (512)
Q Consensus 171 ~~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~ 250 (512)
..+++++|++|||||++|||+++|++|+++|++|++++|+.+..++..+++. ...++.++.+
T Consensus 10 ~~~~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~------------------~~~~~~~~~~ 71 (278)
T 2bgk_A 10 STNRLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIG------------------SPDVISFVHC 71 (278)
T ss_dssp -CCTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC------------------CTTTEEEEEC
T ss_pred CcccccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCChhHHHHHHHHhC------------------CCCceEEEEC
Confidence 3456899999999999999999999999999999999999877665544431 1136889999
Q ss_pred cCCChhhHHHHHHHHHHHcCCCcccccccccCCC-CCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEe
Q 010380 251 DVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKG-FKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFN 329 (512)
Q Consensus 251 Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~-~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~ 329 (512)
|++|+++++++++++.++++++|+||||||+... ..++.+.+.++|++++++|+.++++++++++|.|+++ +.++||+
T Consensus 72 D~~~~~~~~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~iv~ 150 (278)
T 2bgk_A 72 DVTKDEDVRNLVDTTIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPA-KKGSIVF 150 (278)
T ss_dssp CTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGG-TCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCEEEECCcccCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhc-CCCeEEE
Confidence 9999999999999999999999999999998642 2567889999999999999999999999999999876 5789999
Q ss_pred ecCCCCCCCCCC-CcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHH
Q 010380 330 MDGAGSGGSSTP-LTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVAR 408 (512)
Q Consensus 330 vSS~~a~~~~~p-~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~ 408 (512)
+||. .+..+.+ +...|++||++++.|++.++.|++++||+|++|+||+|.|++.......... .. +....
T Consensus 151 isS~-~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~-~~-------~~~~~ 221 (278)
T 2bgk_A 151 TASI-SSFTAGEGVSHVYTATKHAVLGLTTSLCTELGEYGIRVNCVSPYIVASPLLTDVFGVDSS-RV-------EELAH 221 (278)
T ss_dssp ECCG-GGTCCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCSCCCCTTSSSCCHH-HH-------HHHHH
T ss_pred Eeec-cccCCCCCCCcchHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeceecchhhhhhcccchh-HH-------HHhhh
Confidence 9998 5566666 7889999999999999999999999999999999999999986543211110 00 01111
Q ss_pred ---HhccccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 409 ---TLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 409 ---~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
.+.+++..|+|+++++.||+++...+.++..+..+|++
T Consensus 222 ~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~ 262 (278)
T 2bgk_A 222 QAANLKGTLLRAEDVADAVAYLAGDESKYVSGLNLVIDGGY 262 (278)
T ss_dssp HTCSSCSCCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred cccccccccCCHHHHHHHHHHHcCcccccCCCCEEEECCcc
Confidence 13456788999999999999876544444445555543
|
| >2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-35 Score=285.23 Aligned_cols=217 Identities=24% Similarity=0.384 Sum_probs=188.5
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-------EEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEE
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSGD-------RVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIA 249 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~Ga-------~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~ 249 (512)
+|++|||||++|||+++|++|+++|+ +|++++|+.++++++.+++.. .+.++.++.
T Consensus 2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~-----------------~~~~~~~~~ 64 (244)
T 2bd0_A 2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRA-----------------EGALTDTIT 64 (244)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHT-----------------TTCEEEEEE
T ss_pred CCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHHHc-----------------cCCeeeEEE
Confidence 68999999999999999999999999 999999998888777666643 346789999
Q ss_pred ccCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEe
Q 010380 250 CDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFN 329 (512)
Q Consensus 250 ~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~ 329 (512)
+|++|+++++++++++.++++++|+||||||+.. ..++.+.+.++|++++++|+.++++++++++|.|+++ +.++||+
T Consensus 65 ~D~~~~~~v~~~~~~~~~~~g~id~li~~Ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~iv~ 142 (244)
T 2bd0_A 65 ADISDMADVRRLTTHIVERYGHIDCLVNNAGVGR-FGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQ-HSGHIFF 142 (244)
T ss_dssp CCTTSHHHHHHHHHHHHHHTSCCSEEEECCCCCC-CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEE
T ss_pred ecCCCHHHHHHHHHHHHHhCCCCCEEEEcCCcCC-cCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhC-CCCEEEE
Confidence 9999999999999999999999999999999876 6778889999999999999999999999999999876 5689999
Q ss_pred ecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHH
Q 010380 330 MDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVART 409 (512)
Q Consensus 330 vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~ 409 (512)
+||. ++..+.++...|++||+++++|+++++.|+.+.||+|++|+||+|.|++........
T Consensus 143 isS~-~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~------------------ 203 (244)
T 2bd0_A 143 ITSV-AATKAFRHSSIYCMSKFGQRGLVETMRLYARKCNVRITDVQPGAVYTPMWGKVDDEM------------------ 203 (244)
T ss_dssp ECCG-GGTSCCTTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCSTTTCCCCSTT------------------
T ss_pred Eecc-hhcCCCCCCchhHHHHHHHHHHHHHHHHHhhccCcEEEEEECCCccchhhhhccccc------------------
Confidence 9998 667778889999999999999999999999999999999999999999875421100
Q ss_pred hccccccchhhhhhhhhcCChHH
Q 010380 410 LVPRIRVVKGSGKAINYLTPPRI 432 (512)
Q Consensus 410 ~l~r~~~~~~va~~v~~L~s~~~ 432 (512)
-.+...|+++++.+.+++++..
T Consensus 204 -~~~~~~~~dva~~~~~l~~~~~ 225 (244)
T 2bd0_A 204 -QALMMMPEDIAAPVVQAYLQPS 225 (244)
T ss_dssp -GGGSBCHHHHHHHHHHHHTSCT
T ss_pred -cccCCCHHHHHHHHHHHHhCCc
Confidence 0144667777777777776543
|
| >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-35 Score=289.89 Aligned_cols=241 Identities=20% Similarity=0.205 Sum_probs=192.6
Q ss_pred cCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEcc
Q 010380 172 HCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACD 251 (512)
Q Consensus 172 ~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~D 251 (512)
.+++++|+++||||++|||+++|++|+++|++|++++|+.+++++..+++ +.++.++.+|
T Consensus 7 ~~~~~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~--------------------~~~~~~~~~D 66 (265)
T 2o23_A 7 CRSVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKL--------------------GNNCVFAPAD 66 (265)
T ss_dssp -CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHH--------------------CTTEEEEECC
T ss_pred ccCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcHhHHHHHHHh--------------------CCceEEEEcC
Confidence 45788999999999999999999999999999999999988877655543 2468889999
Q ss_pred CCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCc------CCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCC---
Q 010380 252 VCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLL------QFTNEEIEQIVSTNLVGSILCTREAMRVMRDQP--- 322 (512)
Q Consensus 252 ltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~------~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~--- 322 (512)
++|+++++++++++.++++++|+||||||+.. ..++. +.+.++|++.+++|+.++++++++++|.|+++.
T Consensus 67 ~~~~~~v~~~~~~~~~~~g~id~li~~Ag~~~-~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~ 145 (265)
T 2o23_A 67 VTSEKDVQTALALAKGKFGRVDVAVNCAGIAV-ASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQ 145 (265)
T ss_dssp TTCHHHHHHHHHHHHHHHSCCCEEEECCCCCC-CCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCT
T ss_pred CCCHHHHHHHHHHHHHHCCCCCEEEECCccCC-CCccccccccCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999999999876 33333 478999999999999999999999999998752
Q ss_pred --CCCeEEeecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhc
Q 010380 323 --KGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIIC 400 (512)
Q Consensus 323 --~~g~IV~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~ 400 (512)
+.++||++||. .+..+.++...|++||+|++.|+++++.|++++||+||+|+||+|+|++.........
T Consensus 146 ~~~~~~iv~isS~-~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~-------- 216 (265)
T 2o23_A 146 GGQRGVIINTASV-AAFEGQVGQAAYSASKGGIVGMTLPIARDLAPIGIRVMTIAPGLFGTPLLTSLPEKVC-------- 216 (265)
T ss_dssp TSCCEEEEEECCT-HHHHCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCC------------------
T ss_pred CCCCcEEEEeCCh-hhcCCCCCCchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeccccCccccccCHHHH--------
Confidence 46899999987 5666778889999999999999999999999999999999999999998643211000
Q ss_pred CCHHHHHHHhc-cccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 401 ELPETVARTLV-PRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 401 ~~pe~vA~~~l-~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
.......++ +++..|+++++.+.||+... +.++..+..+|++
T Consensus 217 --~~~~~~~~~~~~~~~~~dva~~~~~l~~~~--~~~G~~i~vdgG~ 259 (265)
T 2o23_A 217 --NFLASQVPFPSRLGDPAEYAHLVQAIIENP--FLNGEVIRLDGAI 259 (265)
T ss_dssp --CHHHHTCSSSCSCBCHHHHHHHHHHHHHCT--TCCSCEEEESTTC
T ss_pred --HHHHHcCCCcCCCCCHHHHHHHHHHHhhcC--ccCceEEEECCCE
Confidence 011112334 67788999999999887422 3344444455544
|
| >3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-35 Score=287.55 Aligned_cols=244 Identities=21% Similarity=0.303 Sum_probs=200.9
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcC-hhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRS-SESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~-~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
++++|+++||||++|||+++|++|+++|++|++++|+ .++++++.+++.+ .+.++.++.+|+
T Consensus 4 ~l~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-----------------~~~~~~~~~~D~ 66 (258)
T 3afn_B 4 DLKGKRVLITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMRA-----------------DGGDAAFFAADL 66 (258)
T ss_dssp GGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHHHH-----------------TTCEEEEEECCT
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEECCCchhhHHHHHHHHHh-----------------cCCceEEEECCC
Confidence 4678999999999999999999999999999999999 8888777777654 346789999999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCC----CCCeEE
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQP----KGGHIF 328 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~----~~g~IV 328 (512)
+|+++++++++++.++++++|+||||||......++.+.+.++|++++++|+.++++++++++|.|.++. ..++||
T Consensus 67 ~~~~~~~~~~~~~~~~~g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~iv 146 (258)
T 3afn_B 67 ATSEACQQLVDEFVAKFGGIDVLINNAGGLVGRKPLPEIDDTFYDAVMDANIRSVVMTTKFALPHLAAAAKASGQTSAVI 146 (258)
T ss_dssp TSHHHHHHHHHHHHHHHSSCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTSCEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCCcCCcCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcccCCCCCcEEE
Confidence 9999999999999999999999999999833257788899999999999999999999999999997641 128999
Q ss_pred eecCCCCCCC-CCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHH
Q 010380 329 NMDGAGSGGS-STPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVA 407 (512)
Q Consensus 329 ~vSS~~a~~~-~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA 407 (512)
++||. .+.. +.++...|++||++++.+++.++.|++++||+||+|+||+|.|++...... .... ....
T Consensus 147 ~~sS~-~~~~~~~~~~~~Y~~sK~a~~~~~~~~~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~----~~~~------~~~~ 215 (258)
T 3afn_B 147 STGSI-AGHTGGGPGAGLYGAAKAFLHNVHKNWVDFHTKDGVRFNIVSPGTVDTAFHADKTQ----DVRD------RISN 215 (258)
T ss_dssp EECCT-HHHHCCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSGGGTTCCH----HHHH------HHHT
T ss_pred Eecch-hhccCCCCCchHHHHHHHHHHHHHHHHHHhhcccCeEEEEEeCCCcccccccccCH----HHHH------HHhc
Confidence 99987 4444 678889999999999999999999999999999999999999998643211 1000 0111
Q ss_pred HHhccccccchhhhhhhhhcCChHHH-HHHHHHHhccCc
Q 010380 408 RTLVPRIRVVKGSGKAINYLTPPRIL-LALVTAWLRRGR 445 (512)
Q Consensus 408 ~~~l~r~~~~~~va~~v~~L~s~~~~-~~~~~~~~~~g~ 445 (512)
..+++++..|+|+++++.|++++... +.++..+..+|+
T Consensus 216 ~~~~~~~~~~~dva~~~~~l~~~~~~~~~~G~~~~v~gg 254 (258)
T 3afn_B 216 GIPMGRFGTAEEMAPAFLFFASHLASGYITGQVLDINGG 254 (258)
T ss_dssp TCTTCSCBCGGGTHHHHHHHHCHHHHTTCCSEEEEESTT
T ss_pred cCCCCcCCCHHHHHHHHHHHhCcchhccccCCEEeECCC
Confidence 23456788999999999999987654 434444444444
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-35 Score=328.18 Aligned_cols=230 Identities=23% Similarity=0.267 Sum_probs=193.9
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcCh---------hhHHHHHHHHHHHHhhhhhhcCCCCcccccCc
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSS---------ESVRMTVTELEENLKEGMMAAGGSSKKNLVHA 243 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~---------~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~ 243 (512)
+++++|++|||||++|||+++|++|+++|++|++.+|+. +.++++.+++.+ .+.
T Consensus 4 ~~l~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~~~~~~~gr~~~~~~~~~~~i~~-----------------~g~ 66 (604)
T 2et6_A 4 VDFKDKVVIITGAGGGLGKYYSLEFAKLGAKVVVNDLGGALNGQGGNSKAADVVVDEIVK-----------------NGG 66 (604)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECC-----------CHHHHHHHHHHH-----------------TTC
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCccccccccchHHHHHHHHHHHh-----------------cCC
Confidence 468899999999999999999999999999999998765 566666666654 223
Q ss_pred eEEEEEccCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCC
Q 010380 244 KVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPK 323 (512)
Q Consensus 244 ~v~~v~~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~ 323 (512)
++ .+|++|.++++++++++.+++|+||+||||||+.. ..++.+++.++|++++++|+.|+++++|+++|+|+++ +
T Consensus 67 ~~---~~d~~d~~~~~~~v~~~~~~~G~iDiLVnNAGi~~-~~~~~~~~~~~~~~~~~vNl~g~~~~~~a~~p~m~~~-~ 141 (604)
T 2et6_A 67 VA---VADYNNVLDGDKIVETAVKNFGTVHVIINNAGILR-DASMKKMTEKDYKLVIDVHLNGAFAVTKAAWPYFQKQ-K 141 (604)
T ss_dssp EE---EEECCCTTCHHHHHHHHHHHHSCCCEEEECCCCCC-CBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-T
T ss_pred eE---EEEcCCHHHHHHHHHHHHHHcCCCCEEEECCCCCC-CCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-C
Confidence 33 36999999999999999999999999999999976 6789999999999999999999999999999999886 5
Q ss_pred CCeEEeecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCH
Q 010380 324 GGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELP 403 (512)
Q Consensus 324 ~g~IV~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~p 403 (512)
.|+||++||. ++..+.++...|++||+|+.+|+++|+.|++++||+||+|+|| +.|+|..... .+
T Consensus 142 ~G~IVnisS~-ag~~~~~~~~~Y~asKaal~~lt~~la~El~~~gIrVn~v~Pg-~~T~m~~~~~-------------~~ 206 (604)
T 2et6_A 142 YGRIVNTSSP-AGLYGNFGQANYASAKSALLGFAETLAKEGAKYNIKANAIAPL-ARSRMTESIM-------------PP 206 (604)
T ss_dssp CEEEEEECCH-HHHHCCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-CCCHHHHTTS-------------CH
T ss_pred CCEEEEECCH-HHcCCCCCchHHHHHHHHHHHHHHHHHHHhCccCeEEEEEccC-CcCccccccC-------------Ch
Confidence 7999999997 6677889999999999999999999999999999999999998 6898753211 11
Q ss_pred HHHHHHhccccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 404 ETVARTLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 404 e~vA~~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
+. .....|++++..+.||+++. .+.++..+..+|++
T Consensus 207 ~~------~~~~~pe~vA~~v~~L~s~~-~~itG~~~~vdgG~ 242 (604)
T 2et6_A 207 PM------LEKLGPEKVAPLVLYLSSAE-NELTGQFFEVAAGF 242 (604)
T ss_dssp HH------HTTCSHHHHHHHHHHHTSSS-CCCCSCEEEEETTE
T ss_pred hh------hccCCHHHHHHHHHHHhCCc-ccCCCCEEEECCCe
Confidence 11 01247888999999999987 66677777777765
|
| >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-34 Score=291.66 Aligned_cols=252 Identities=23% Similarity=0.381 Sum_probs=205.8
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
.++++|+++||||++|||+++|++|+++|++|++++|+.++++++.+++.+.... ..+.++.++.+|+
T Consensus 14 ~~l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~------------~~~~~~~~~~~D~ 81 (303)
T 1yxm_A 14 GLLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPP------------TKQARVIPIQCNI 81 (303)
T ss_dssp TTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCT------------TCCCCEEEEECCT
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhccc------------cCCccEEEEecCC
Confidence 4688999999999999999999999999999999999998888887777542110 0245789999999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|+++++++++.+.+.++++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|.+.++ +.++||++||
T Consensus 82 ~~~~~v~~~~~~~~~~~g~id~li~~Ag~~~-~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~~~iv~isS 159 (303)
T 1yxm_A 82 RNEEEVNNLVKSTLDTFGKINFLVNNGGGQF-LSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKE-HGGSIVNIIV 159 (303)
T ss_dssp TCHHHHHHHHHHHHHHHSCCCEEEECCCCCC-CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHH-HCEEEEEECC
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCCCC-CCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHh-cCCeEEEEEe
Confidence 9999999999999999999999999999865 5778889999999999999999999999999976544 3689999998
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhcc
Q 010380 333 AGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVP 412 (512)
Q Consensus 333 ~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~ 412 (512)
. + ..+.+....|++||+++++|+++++.|+.+.||+|++|+||+|.|++.............. ......+++
T Consensus 160 ~-~-~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~------~~~~~~p~~ 231 (303)
T 1yxm_A 160 P-T-KAGFPLAVHSGAARAGVYNLTKSLALEWACSGIRINCVAPGVIYSQTAVENYGSWGQSFFE------GSFQKIPAK 231 (303)
T ss_dssp C-C-TTCCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCCTGGGTTSGGGGGGGGT------TGGGGSTTS
T ss_pred e-c-ccCCCcchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCcccchhhhhccccchHHHH------HHHhcCccc
Confidence 7 3 6677888999999999999999999999999999999999999999632211110011110 011123456
Q ss_pred ccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 413 RIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 413 r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
++..|++++.++.||+++...+.++..+..+|++
T Consensus 232 ~~~~~~dvA~~i~~l~~~~~~~~~G~~~~v~gG~ 265 (303)
T 1yxm_A 232 RIGVPEEVSSVVCFLLSPAASFITGQSVDVDGGR 265 (303)
T ss_dssp SCBCTHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred CCCCHHHHHHHHHHHhCcccccCCCcEEEECCCe
Confidence 7889999999999999887655566666666654
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-35 Score=325.49 Aligned_cols=230 Identities=24% Similarity=0.337 Sum_probs=193.5
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
+++++|++|||||++|||+++|++|+++|++|++.+|+. ++++.+++.+ .+.++..+.+|+
T Consensus 318 ~~l~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~~--~~~~~~~i~~-----------------~g~~~~~~~~Dv 378 (604)
T 2et6_A 318 VSLKDKVVLITGAGAGLGKEYAKWFAKYGAKVVVNDFKD--ATKTVDEIKA-----------------AGGEAWPDQHDV 378 (604)
T ss_dssp CCCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSC--CHHHHHHHHH-----------------TTCEEEEECCCH
T ss_pred cccCCCeEEEECcchHHHHHHHHHHHHCCCEEEEEeCcc--HHHHHHHHHh-----------------cCCeEEEEEcCh
Confidence 368899999999999999999999999999999998742 3455566644 345677788888
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+ ++++++++++.+++|+||+||||||+.. ..++.+++.++|++++++|+.|+++++|+++|+|+++ ++|+||++||
T Consensus 379 ~--~~~~~~~~~~~~~~G~iDiLVnNAGi~~-~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~-~~G~IVnisS 454 (604)
T 2et6_A 379 A--KDSEAIIKNVIDKYGTIDILVNNAGILR-DRSFAKMSKQEWDSVQQVHLIGTFNLSRLAWPYFVEK-QFGRIINITS 454 (604)
T ss_dssp H--HHHHHHHHHHHHHHSCCCEEEECCCCCC-CBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECC
T ss_pred H--HHHHHHHHHHHHhcCCCCEEEECCCCCC-CCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCCEEEEECC
Confidence 4 5567888999999999999999999976 6789999999999999999999999999999999887 5799999999
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhcc
Q 010380 333 AGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVP 412 (512)
Q Consensus 333 ~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~ 412 (512)
. ++..+.+++..|++||+|+.+|+++|+.|++++||+||+|+||. +|+|..... +++ ..
T Consensus 455 ~-ag~~~~~~~~~Y~asKaal~~lt~~la~El~~~gIrVn~v~PG~-~T~m~~~~~--------------~~~-----~~ 513 (604)
T 2et6_A 455 T-SGIYGNFGQANYSSSKAGILGLSKTMAIEGAKNNIKVNIVAPHA-ETAMTLSIM--------------REQ-----DK 513 (604)
T ss_dssp H-HHHSCCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECC-CCCC----------------------------C
T ss_pred h-hhccCCCCChhHHHHHHHHHHHHHHHHHHhCccCeEEEEEcCCC-CCccccccC--------------chh-----hc
Confidence 7 67778889999999999999999999999999999999999995 999863211 000 01
Q ss_pred ccccchhhhhhhhhcCChHHHHHHHHHHhccCccc
Q 010380 413 RIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWF 447 (512)
Q Consensus 413 r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~ 447 (512)
....|++++..+.||+++... .++..+..+|++.
T Consensus 514 ~~~~pe~vA~~v~~L~s~~~~-itG~~~~vdGG~~ 547 (604)
T 2et6_A 514 NLYHADQVAPLLVYLGTDDVP-VTGETFEIGGGWI 547 (604)
T ss_dssp CSSCGGGTHHHHHHTTSTTCC-CCSCEEEEETTEE
T ss_pred cCCCHHHHHHHHHHHhCCccC-CCCcEEEECCCee
Confidence 235899999999999999877 7888888888764
|
| >3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-35 Score=314.20 Aligned_cols=241 Identities=18% Similarity=0.239 Sum_probs=198.5
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
..+++|++|||||++|||+++|++|+++|++|++++|+... ++..+...+ ..+.++.||+
T Consensus 209 ~~l~gk~~LVTGgsgGIG~aiA~~La~~Ga~Vvl~~r~~~~-~~l~~~~~~-------------------~~~~~~~~Dv 268 (454)
T 3u0b_A 209 KPLDGKVAVVTGAARGIGATIAEVFARDGATVVAIDVDGAA-EDLKRVADK-------------------VGGTALTLDV 268 (454)
T ss_dssp STTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECGGGH-HHHHHHHHH-------------------HTCEEEECCT
T ss_pred cCCCCCEEEEeCCchHHHHHHHHHHHHCCCEEEEEeCCccH-HHHHHHHHH-------------------cCCeEEEEec
Confidence 34689999999999999999999999999999999997532 122222211 1345799999
Q ss_pred CChhhHHHHHHHHHHHcCC-CcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeec
Q 010380 253 CEPADVQKLSNFAVNEFGS-IDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD 331 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~-IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vS 331 (512)
+|+++++++++++.+++++ ||+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|.|.++ +.++||++|
T Consensus 269 td~~~v~~~~~~~~~~~g~~id~lV~nAGv~~-~~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~-~~g~iV~iS 346 (454)
T 3u0b_A 269 TADDAVDKITAHVTEHHGGKVDILVNNAGITR-DKLLANMDEKRWDAVIAVNLLAPQRLTEGLVGNGTIG-EGGRVIGLS 346 (454)
T ss_dssp TSTTHHHHHHHHHHHHSTTCCSEEEECCCCCC-CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHTTSSC-TTCEEEEEC
T ss_pred CCHHHHHHHHHHHHHHcCCCceEEEECCcccC-CCccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-CCCEEEEEe
Confidence 9999999999999999986 999999999987 6889999999999999999999999999999999876 578999999
Q ss_pred CCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHH-HHh
Q 010380 332 GAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVA-RTL 410 (512)
Q Consensus 332 S~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA-~~~ 410 (512)
|. ++..+.+++..|++||+++++|+++++.|++++||+||+|+||+|+|+|........ .+... ...
T Consensus 347 S~-a~~~g~~g~~~YaasKaal~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~-----------~~~~~~~~~ 414 (454)
T 3u0b_A 347 SM-AGIAGNRGQTNYATTKAGMIGLAEALAPVLADKGITINAVAPGFIETKMTEAIPLAT-----------REVGRRLNS 414 (454)
T ss_dssp CH-HHHHCCTTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECSBCC---------------------CHHHHHSBT
T ss_pred Ch-HhCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEcCcccChhhhhcchhh-----------HHHHHhhcc
Confidence 98 677888999999999999999999999999999999999999999999975321110 11111 134
Q ss_pred ccccccchhhhhhhhhcCChHHHHHHHHHHhccCccc
Q 010380 411 VPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWF 447 (512)
Q Consensus 411 l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~ 447 (512)
+.+...|+|+++++.||+++...+.++..+..+|++.
T Consensus 415 l~r~g~pedvA~~v~fL~s~~a~~itG~~i~vdGG~~ 451 (454)
T 3u0b_A 415 LFQGGQPVDVAELIAYFASPASNAVTGNTIRVCGQAM 451 (454)
T ss_dssp TSSCBCHHHHHHHHHHHHCGGGTTCCSCEEEESSSBS
T ss_pred ccCCCCHHHHHHHHHHHhCCccCCCCCcEEEECCccc
Confidence 6678899999999999999988888888887777653
|
| >3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-35 Score=309.53 Aligned_cols=231 Identities=15% Similarity=0.150 Sum_probs=187.8
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHH-CCCEEEEEEcChhhHHH------------HHHHHHHHHhhhhhhcCCCCccc
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLL-SGDRVVVASRSSESVRM------------TVTELEENLKEGMMAAGGSSKKN 239 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~-~Ga~Vvl~~R~~~~l~~------------~~~el~~~~~~~~~~~g~~~~~~ 239 (512)
+...+|++|||||++|||+++|+.|++ +|++|++++|+.+.+++ ..+++.+
T Consensus 57 ~~~~gKvaLVTGASsGIG~AiA~~LA~~~GA~Vv~~~r~~~~~~~~~~~ag~~n~~a~~~~~~~---------------- 120 (422)
T 3s8m_A 57 RNDGPKKVLVIGASSGYGLASRITAAFGFGADTLGVFFEKPGTASKAGTAGWYNSAAFDKHAKA---------------- 120 (422)
T ss_dssp CSSSCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHH----------------
T ss_pred cccCCCEEEEECCChHHHHHHHHHHHHhCCCEEEEEeCCchhhhhhhcccccchhHHHHHHHHh----------------
Confidence 334699999999999999999999999 99999999998655332 2233333
Q ss_pred ccCceEEEEEccCCChhhHHHHHHHHHHHc-CCCcccccccccC------------CCCCCC------------------
Q 010380 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEF-GSIDIWINNAGTN------------KGFKPL------------------ 288 (512)
Q Consensus 240 ~~g~~v~~v~~Dltd~~sv~~~~~~i~~~~-g~IDvLInnAG~~------------~~~~~~------------------ 288 (512)
.+.++..+.+|++|+++++++++++.+++ |+||+||||||+. ....++
T Consensus 121 -~G~~a~~i~~Dvtd~~~v~~~v~~i~~~~~G~IDiLVNNAG~~~r~~p~~G~~~~~~~~p~~~~~~~~~~d~~~~~~~~ 199 (422)
T 3s8m_A 121 -AGLYSKSINGDAFSDAARAQVIELIKTEMGGQVDLVVYSLASPVRKLPGSGEVKRSALKPIGQTYTATAIDTNKDTIIQ 199 (422)
T ss_dssp -TTCCEEEEESCTTSHHHHHHHHHHHHHHSCSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEE
T ss_pred -cCCcEEEEEecCCCHHHHHHHHHHHHHHcCCCCCEEEEcCccccccccccccccccccccccccccccccccccccccc
Confidence 45678899999999999999999999999 9999999999973 112344
Q ss_pred ---cCCCHHHHHHHHHhhhhhHH-HHHHHHHHHHHhCCCCCeEEeecCCCCCCCCCCCc--chhhHHHHHHHHHHHHHHH
Q 010380 289 ---LQFTNEEIEQIVSTNLVGSI-LCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLT--AVYGSTKCGLRQLQASLFK 362 (512)
Q Consensus 289 ---~~~s~e~~~~~~~vNv~g~~-~l~k~~lp~m~~~~~~g~IV~vSS~~a~~~~~p~~--~~Y~aSKaAl~~l~~sLa~ 362 (512)
.+.+.++|++++++|..+.+ .+++++++.+..+ ++|+||++||. ++..+.|.+ ++|++||+|+.+|+++|+.
T Consensus 200 ~~~~~~t~e~~~~~v~Vn~~~~~~~~~~a~~~~~m~~-~gG~IVniSSi-~g~~~~p~~~~~aY~ASKaAl~~lTrsLA~ 277 (422)
T 3s8m_A 200 ASIEPASAQEIEDTITVMGGQDWELWIDALEGAGVLA-DGARSVAFSYI-GTEITWPIYWHGALGKAKVDLDRTAQRLNA 277 (422)
T ss_dssp EEECCCCHHHHHHHHHHHSSHHHHHHHHHHHHTTCEE-EEEEEEEEEEC-CCGGGHHHHTSHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHhhchhHHHHHHHHHHHHHHhh-CCCEEEEEeCc-hhhccCCCccchHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999997 7888877643322 36899999998 566666766 8999999999999999999
Q ss_pred HhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhccccccchhhhhhhhhcCChHH
Q 010380 363 ESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPRIRVVKGSGKAINYLTPPRI 432 (512)
Q Consensus 363 El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~r~~~~~~va~~v~~L~s~~~ 432 (512)
|++++|||||+|+||+|+|++........ .-......+++|.+.|++++..+.||+++..
T Consensus 278 Ela~~GIRVNaVaPG~i~T~~~~~ip~~~----------~~~~~~~~~m~r~G~pEdva~~v~~L~sd~l 337 (422)
T 3s8m_A 278 RLAKHGGGANVAVLKSVVTQASAAIPVMP----------LYISMVYKIMKEKGLHEGTIEQLDRLFRERL 337 (422)
T ss_dssp HHHTTTCEEEEEEECCCCCTTGGGSTHHH----------HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTT
T ss_pred HhCccCEEEEEEEcCCCcChhhhcCCCCh----------HHHHHHHhhhcCCcChHHHHHHHHHHhcchh
Confidence 99999999999999999999974321100 0012234578999999999999999999875
|
| >3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-34 Score=301.16 Aligned_cols=228 Identities=13% Similarity=0.092 Sum_probs=188.1
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHH-CCCEEEEEEcChhhHH------------HHHHHHHHHHhhhhhhcCCCCcccc
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLL-SGDRVVVASRSSESVR------------MTVTELEENLKEGMMAAGGSSKKNL 240 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~-~Ga~Vvl~~R~~~~l~------------~~~~el~~~~~~~~~~~g~~~~~~~ 240 (512)
.-.+|++|||||++|||+++|+.|++ +|++|++++|+.+..+ ...+++.+
T Consensus 44 ~~~gKvaLVTGas~GIG~AiA~~LA~g~GA~Vv~~~~~~~~~~~~~~~~gwyn~~~~~~~~~~----------------- 106 (405)
T 3zu3_A 44 ANGPKRVLVIGASTGYGLAARITAAFGCGADTLGVFFERPGEEGKPGTSGWYNSAAFHKFAAQ----------------- 106 (405)
T ss_dssp TTCCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCBTTBCCCHHHHHHHHHHHHHHH-----------------
T ss_pred CCCCCEEEEeCcchHHHHHHHHHHHHhcCCEEEEEeCCchhhhhhcccccchhHHHHHHHHHh-----------------
Confidence 45799999999999999999999999 9999999998765432 12223333
Q ss_pred cCceEEEEEccCCChhhHHHHHHHHHHHcCCCcccccccccCC------------CCCCC--------------------
Q 010380 241 VHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNK------------GFKPL-------------------- 288 (512)
Q Consensus 241 ~g~~v~~v~~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~------------~~~~~-------------------- 288 (512)
.+.++..+.+|++|+++++++++++.+++|+||+||||||+.. ...++
T Consensus 107 ~G~~a~~i~~Dvtd~~~v~~~v~~i~~~~G~IDiLVNNAG~~~r~~p~tG~~~~s~~~pig~~~~~~~~d~~~~~~~~~~ 186 (405)
T 3zu3_A 107 KGLYAKSINGDAFSDEIKQLTIDAIKQDLGQVDQVIYSLASPRRTHPKTGEVFNSALKPIGNAVNLRGLDTDKEVIKESV 186 (405)
T ss_dssp TTCCEEEEESCTTSHHHHHHHHHHHHHHTSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEE
T ss_pred cCCceEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEEcCccccccCcccccccccccccccccccccccccccccccccc
Confidence 3567889999999999999999999999999999999999841 13454
Q ss_pred -cCCCHHHHHHHHHhhhhhHH-HHHHHHHHH-HHhCCCCCeEEeecCCCCCCCCCCCc--chhhHHHHHHHHHHHHHHHH
Q 010380 289 -LQFTNEEIEQIVSTNLVGSI-LCTREAMRV-MRDQPKGGHIFNMDGAGSGGSSTPLT--AVYGSTKCGLRQLQASLFKE 363 (512)
Q Consensus 289 -~~~s~e~~~~~~~vNv~g~~-~l~k~~lp~-m~~~~~~g~IV~vSS~~a~~~~~p~~--~~Y~aSKaAl~~l~~sLa~E 363 (512)
.+.+.++|++++++|..+.+ ++++++.+. |++ ++|+||++||. ++..+.|.+ ++|++||+|+++|+++|+.|
T Consensus 187 i~~~t~ee~~~~v~Vn~~~~~~~~~~~~~~~~m~~--~gG~IVniSSi-~~~~~~p~~~~~aY~AaKaal~~ltrsLA~E 263 (405)
T 3zu3_A 187 LQPATQSEIDSTVAVMGGEDWQMWIDALLDAGVLA--EGAQTTAFTYL-GEKITHDIYWNGSIGAAKKDLDQKVLAIRES 263 (405)
T ss_dssp ECCCCHHHHHHHHHHHSSHHHHHHHHHHHHHTCEE--EEEEEEEEECC-CCGGGTTTTTTSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHhhchhHHHHHHHHHHHHhhhh--CCcEEEEEeCc-hhhCcCCCccchHHHHHHHHHHHHHHHHHHH
Confidence 77899999999999999998 788887754 544 36899999998 567777877 99999999999999999999
Q ss_pred hCCC-CeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhccccccchhhhhhhhhcCChH
Q 010380 364 SKRS-KVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPRIRVVKGSGKAINYLTPPR 431 (512)
Q Consensus 364 l~~~-GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~r~~~~~~va~~v~~L~s~~ 431 (512)
+++. |||||+|+||+|.|++........ ........++++.+.|++++..+.||+++.
T Consensus 264 la~~~GIRVNaVaPG~i~T~~s~~ip~~p----------~y~~~l~~~mkr~G~~Ed~a~~i~~L~sd~ 322 (405)
T 3zu3_A 264 LAAHGGGDARVSVLKAVVSQASSAIPMMP----------LYLSLLFKVMKEKGTHEGCIEQVYSLYKDS 322 (405)
T ss_dssp HHTTTSCEEEEEECCCCCCHHHHTSTTHH----------HHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred hCcccCeEEEEEEeCCCcCchhhcCCCCc----------HHHHHHHHHHhcCCCcHHHHHHHHHHHhcc
Confidence 9999 999999999999999864322100 011223447899999999999999999984
|
| >2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-35 Score=284.62 Aligned_cols=239 Identities=21% Similarity=0.318 Sum_probs=196.5
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEE-EcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEE-EEccCCC
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSGDRVVVA-SRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAG-IACDVCE 254 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~-~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~-v~~Dltd 254 (512)
+|+++||||++|||+++|++|+++|++|+++ +|+.++++++.+++.+ .+.++.. +.+|++|
T Consensus 1 ~k~vlITGasggiG~~~a~~l~~~G~~v~~~~~r~~~~~~~~~~~~~~-----------------~~~~~~~~~~~D~~~ 63 (245)
T 2ph3_A 1 MRKALITGASRGIGRAIALRLAEDGFALAIHYGQNREKAEEVAEEARR-----------------RGSPLVAVLGANLLE 63 (245)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESSCHHHHHHHHHHHHH-----------------TTCSCEEEEECCTTS
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHh-----------------cCCceEEEEeccCCC
Confidence 4789999999999999999999999999998 8998888777766654 2345666 8999999
Q ss_pred hhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCC
Q 010380 255 PADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAG 334 (512)
Q Consensus 255 ~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~ 334 (512)
+++++++++++.+.++++|+||||||+.. ..++.+.+.++|++++++|+.|++++++.++|.|+++ +.++||++||.
T Consensus 64 ~~~~~~~~~~~~~~~~~~d~li~~Ag~~~-~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~-~~~~iv~~sS~- 140 (245)
T 2ph3_A 64 AEAATALVHQAAEVLGGLDTLVNNAGITR-DTLLVRMKDEDWEAVLEANLSAVFRTTREAVKLMMKA-RFGRIVNITSV- 140 (245)
T ss_dssp HHHHHHHHHHHHHHHTCCCEEEECCCCCC-CBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCT-
T ss_pred HHHHHHHHHHHHHhcCCCCEEEECCCCCC-CCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhc-CCCEEEEEeCh-
Confidence 99999999999999999999999999876 5778899999999999999999999999999999876 46899999987
Q ss_pred CCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhcccc
Q 010380 335 SGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPRI 414 (512)
Q Consensus 335 a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~r~ 414 (512)
.+..+.++...|++||++++.++++++.|+.+.||+|++|+||++.|++......... .......+.+++
T Consensus 141 ~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~----------~~~~~~~~~~~~ 210 (245)
T 2ph3_A 141 VGILGNPGQANYVASKAGLIGFTRAVAKEYAQRGITVNAVAPGFIETEMTERLPQEVK----------EAYLKQIPAGRF 210 (245)
T ss_dssp HHHHCCSSBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTSCHHHH----------HHHHHTCTTCSC
T ss_pred hhccCCCCCcchHHHHHHHHHHHHHHHHHHHHcCeEEEEEEEEeecCcchhhcCHHHH----------HHHHhcCCCCCC
Confidence 4556678889999999999999999999999999999999999999998643211000 001112345677
Q ss_pred ccchhhhhhhhhcCChHHHHHHHHHHhccCc
Q 010380 415 RVVKGSGKAINYLTPPRILLALVTAWLRRGR 445 (512)
Q Consensus 415 ~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~ 445 (512)
..|+|+++.+.+++++...+.++..+..+|+
T Consensus 211 ~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg 241 (245)
T 2ph3_A 211 GRPEEVAEAVAFLVSEKAGYITGQTLCVDGG 241 (245)
T ss_dssp BCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred cCHHHHHHHHHHHhCcccccccCCEEEECCC
Confidence 8899999999999987543333444444443
|
| >3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-35 Score=283.24 Aligned_cols=239 Identities=21% Similarity=0.292 Sum_probs=191.7
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
+++++|+++||||++|||+++|++|+++|++|++++|+.++++++.+++ ..+.++.+|+
T Consensus 3 ~~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---------------------~~~~~~~~D~ 61 (244)
T 3d3w_A 3 LFLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVREC---------------------PGIEPVCVDL 61 (244)
T ss_dssp CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS---------------------TTCEEEECCT
T ss_pred cccCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc---------------------CCCCEEEEeC
Confidence 4678999999999999999999999999999999999987765544332 1234579999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|+++++++++ .++++|+||||||+.. ..++.+.+.++|++.+++|+.++++++++++|.|.+++..++||++||
T Consensus 62 ~~~~~~~~~~~----~~~~id~vi~~Ag~~~-~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~~sS 136 (244)
T 3d3w_A 62 GDWEATERALG----SVGPVDLLVNNAAVAL-LQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSS 136 (244)
T ss_dssp TCHHHHHHHHT----TCCCCCEEEECCCCCC-CBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred CCHHHHHHHHH----HcCCCCEEEECCccCC-CcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEeCc
Confidence 99999988776 5689999999999876 577888999999999999999999999999999987633689999999
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhcc
Q 010380 333 AGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVP 412 (512)
Q Consensus 333 ~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~ 412 (512)
. .+..+.++...|++||++++.|+++++.|++++||+|++|+||+|.|++....... .... .......+++
T Consensus 137 ~-~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~Pg~v~t~~~~~~~~~--~~~~------~~~~~~~~~~ 207 (244)
T 3d3w_A 137 Q-CSQRAVTNHSVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQATWSD--PHKA------KTMLNRIPLG 207 (244)
T ss_dssp G-GGTSCCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTTTHHHHSCS--TTHH------HHHHHTCTTC
T ss_pred h-hhccCCCCCchHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccccccchhhhccC--hHHH------HHHHhhCCCC
Confidence 8 56777888999999999999999999999999999999999999999985321100 0000 1111223567
Q ss_pred ccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 413 RIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 413 r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
++..|+|+++++.|++++.....++..+..+|++
T Consensus 208 ~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG~ 241 (244)
T 3d3w_A 208 KFAEVEHVVNAILFLLSDRSGMTTGSTLPVEGGF 241 (244)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred CCcCHHHHHHHHHHHcCccccCCCCCEEEECCCc
Confidence 7889999999999999876433344444444443
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-34 Score=279.99 Aligned_cols=207 Identities=20% Similarity=0.244 Sum_probs=171.0
Q ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhh
Q 010380 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPAD 257 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~s 257 (512)
|++|||||++|||+++|++|+++|++|++++|++++++++.+++ +.++.++.+|++|+++
T Consensus 2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~--------------------~~~~~~~~~D~~~~~~ 61 (230)
T 3guy_A 2 SLIVITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTVTNCL--------------------SNNVGYRARDLASHQE 61 (230)
T ss_dssp -CEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTC--------------------SSCCCEEECCTTCHHH
T ss_pred CEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH--------------------hhccCeEeecCCCHHH
Confidence 68999999999999999999999999999999988876655443 3567889999999999
Q ss_pred HHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCCC
Q 010380 258 VQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGG 337 (512)
Q Consensus 258 v~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~~ 337 (512)
++++++++.+. .|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|.|+++ +++||++||. .+.
T Consensus 62 v~~~~~~~~~~---~d~lv~~Ag~~~-~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~--~~~iv~isS~-~~~ 134 (230)
T 3guy_A 62 VEQLFEQLDSI---PSTVVHSAGSGY-FGLLQEQDPEQIQTLIENNLSSAINVLRELVKRYKDQ--PVNVVMIMST-AAQ 134 (230)
T ss_dssp HHHHHHSCSSC---CSEEEECCCCCC-CSCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--CCEEEEECCG-GGT
T ss_pred HHHHHHHHhhc---CCEEEEeCCcCC-CCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCeEEEEeec-ccC
Confidence 99998876543 499999999887 6888999999999999999999999999999999876 3599999998 677
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhccccccc
Q 010380 338 SSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPRIRVV 417 (512)
Q Consensus 338 ~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~r~~~~ 417 (512)
.+.++...|++||+|+++|+++|+.|++++||+||+|+||+|+|++...... ....++...|
T Consensus 135 ~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~------------------~~~~~~~~~~ 196 (230)
T 3guy_A 135 QPKAQESTYCAVKWAVKGLIESVRLELKGKPMKIIAVYPGGMATEFWETSGK------------------SLDTSSFMSA 196 (230)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHHHHHTTTSSCEEEEEEECCC----------------------------------CCCH
T ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHhcCeEEEEEECCcccChHHHhcCC------------------CCCcccCCCH
Confidence 8889999999999999999999999999999999999999999998643211 1124566778
Q ss_pred hhhhhhhhhcCC
Q 010380 418 KGSGKAINYLTP 429 (512)
Q Consensus 418 ~~va~~v~~L~s 429 (512)
+++++.+.|+++
T Consensus 197 ~dvA~~i~~l~~ 208 (230)
T 3guy_A 197 EDAALMIHGALA 208 (230)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHHHHh
Confidence 888888888776
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-34 Score=283.52 Aligned_cols=219 Identities=23% Similarity=0.302 Sum_probs=187.2
Q ss_pred ccCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEc
Q 010380 171 EHCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIAC 250 (512)
Q Consensus 171 ~~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~ 250 (512)
+.+++++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+ .+.++.++.+
T Consensus 25 ~~~~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~-----------------~~~~~~~~~~ 87 (272)
T 1yb1_A 25 RRKSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKG-----------------LGAKVHTFVV 87 (272)
T ss_dssp CCCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-----------------TTCCEEEEEC
T ss_pred cccccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHh-----------------cCCeEEEEEe
Confidence 45678999999999999999999999999999999999999888877777654 3457899999
Q ss_pred cCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEee
Q 010380 251 DVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNM 330 (512)
Q Consensus 251 Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~v 330 (512)
|++|+++++++++++.++++++|+||||||+.. ..++.+.+.+++++++++|+.|++++++.++|.|+++ +.++||++
T Consensus 88 Dl~~~~~v~~~~~~~~~~~g~iD~li~~Ag~~~-~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~~~iv~i 165 (272)
T 1yb1_A 88 DCSNREDIYSSAKKVKAEIGDVSILVNNAGVVY-TSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKN-NHGHIVTV 165 (272)
T ss_dssp CTTCHHHHHHHHHHHHHHTCCCSEEEECCCCCC-CCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEE
T ss_pred eCCCHHHHHHHHHHHHHHCCCCcEEEECCCcCC-CcchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCCEEEEE
Confidence 999999999999999999999999999999876 5778888999999999999999999999999999886 57899999
Q ss_pred cCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhC---CCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHH
Q 010380 331 DGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESK---RSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVA 407 (512)
Q Consensus 331 SS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~---~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA 407 (512)
||. .+..+.++...|++||++++.|+++++.|+. +.||+|++|+||+|+|++.... .... ....+|+++|
T Consensus 166 sS~-~~~~~~~~~~~Y~~sK~a~~~l~~~la~e~~~~~~~gi~v~~v~Pg~v~t~~~~~~----~~~~--~~~~~~~dva 238 (272)
T 1yb1_A 166 ASA-AGHVSVPFLLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTGFIKNP----STSL--GPTLEPEEVV 238 (272)
T ss_dssp CCC-C-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEEETHHHHCSTTCT----HHHH--CCCCCHHHHH
T ss_pred ech-hhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCccccc----cccc--cCCCCHHHHH
Confidence 998 5666677788999999999999999999996 6799999999999999985421 0001 1123677777
Q ss_pred HHhccccc
Q 010380 408 RTLVPRIR 415 (512)
Q Consensus 408 ~~~l~r~~ 415 (512)
+.++..+.
T Consensus 239 ~~i~~~~~ 246 (272)
T 1yb1_A 239 NRLMHGIL 246 (272)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76665444
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-33 Score=281.82 Aligned_cols=230 Identities=24% Similarity=0.370 Sum_probs=189.8
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
++++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+.. ...++.++.+|++
T Consensus 29 ~l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~---------------~~~~~~~~~~Dl~ 93 (279)
T 1xg5_A 29 RWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAG---------------YPGTLIPYRCDLS 93 (279)
T ss_dssp GGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT---------------CSSEEEEEECCTT
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhcC---------------CCceEEEEEecCC
Confidence 4789999999999999999999999999999999999988887777765420 1256889999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCC-CCeEEeecC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPK-GGHIFNMDG 332 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~-~g~IV~vSS 332 (512)
|+++++++++++.+.++++|+||||||+.. ..++.+.+.++|++++++|+.+++++++.++|.|++++. +++||++||
T Consensus 94 ~~~~v~~~~~~~~~~~g~iD~vi~~Ag~~~-~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~~g~iv~isS 172 (279)
T 1xg5_A 94 NEEDILSMFSAIRSQHSGVDICINNAGLAR-PDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININS 172 (279)
T ss_dssp CHHHHHHHHHHHHHHHCCCSEEEECCCCCC-CCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECC
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEECCCCCC-CCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCceEEEEcC
Confidence 999999999999999999999999999876 577888999999999999999999999999999998732 489999999
Q ss_pred CCCCC--CCCCCcchhhHHHHHHHHHHHHHHHHhC--CCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHH-H
Q 010380 333 AGSGG--SSTPLTAVYGSTKCGLRQLQASLFKESK--RSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETV-A 407 (512)
Q Consensus 333 ~~a~~--~~~p~~~~Y~aSKaAl~~l~~sLa~El~--~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~v-A 407 (512)
. .+. .+.++...|++||++++.|++.++.|+. +.||+||+|+||+|+|++...... ..++.. .
T Consensus 173 ~-~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~~i~v~~v~Pg~v~t~~~~~~~~-----------~~~~~~~~ 240 (279)
T 1xg5_A 173 M-SGHRVLPLSVTHFYSATKYAVTALTEGLRQELREAQTHIRATCISPGVVETQFAFKLHD-----------KDPEKAAA 240 (279)
T ss_dssp G-GGTSCCSCGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCBCSSHHHHHTT-----------TCHHHHHH
T ss_pred h-hhcccCCCCCCchhHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEecCcccchhhhhhcc-----------cChhHHhh
Confidence 7 444 4667778999999999999999999998 889999999999999998421100 011111 1
Q ss_pred HHhccccccchhhhhhhhhcCChH
Q 010380 408 RTLVPRIRVVKGSGKAINYLTPPR 431 (512)
Q Consensus 408 ~~~l~r~~~~~~va~~v~~L~s~~ 431 (512)
.....+...|+|+++.+.|++++.
T Consensus 241 ~~~~~~~~~~~dvA~~i~~l~~~~ 264 (279)
T 1xg5_A 241 TYEQMKCLKPEDVAEAVIYVLSTP 264 (279)
T ss_dssp HHC---CBCHHHHHHHHHHHHHSC
T ss_pred hcccccCCCHHHHHHHHHHHhcCC
Confidence 122335667888888888887643
|
| >2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P reductase, oxidoreductase; 2.60A {Eimeria tenella} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-35 Score=300.32 Aligned_cols=257 Identities=18% Similarity=0.212 Sum_probs=165.4
Q ss_pred CCCCCCEEEEECC--CChHHHHHHHHHHHCCCEEEEEEcCh-----------hhHHH-----------HHHHHHHHHhhh
Q 010380 173 CKAGPRNVVITGS--TRGLGKALAREFLLSGDRVVVASRSS-----------ESVRM-----------TVTELEENLKEG 228 (512)
Q Consensus 173 ~~l~gk~vLVTGa--ssGIG~aiA~~La~~Ga~Vvl~~R~~-----------~~l~~-----------~~~el~~~~~~~ 228 (512)
+++++|++||||| ++|||+++|++|+++|++|++++|++ +++++ +.+++.+.
T Consensus 5 ~~l~~k~~lVTGa~~s~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 80 (319)
T 2ptg_A 5 VDLRGKTAFVAGVADSNGYGWAICKLLRAAGARVLVGTWPPVYSIFKKGLESSRFEQDSFYAQEPSSKVAAEAAEK---- 80 (319)
T ss_dssp CCCTTCEEEEECCCCTTSHHHHHHHHHHHTTCEEEEEECHHHHHHHHC--------------------------------
T ss_pred cccCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEEEeccccccchhhhhhhhhhhhhhhhhcchhhhHHHHhhhc----
Confidence 4578999999999 89999999999999999999998753 22211 11111110
Q ss_pred hhhcCCCCcccccCceEEE----------EEccCCC--------hhhHHHHHHHHHHHcCCCcccccccccCC-CCCCCc
Q 010380 229 MMAAGGSSKKNLVHAKVAG----------IACDVCE--------PADVQKLSNFAVNEFGSIDIWINNAGTNK-GFKPLL 289 (512)
Q Consensus 229 ~~~~g~~~~~~~~g~~v~~----------v~~Dltd--------~~sv~~~~~~i~~~~g~IDvLInnAG~~~-~~~~~~ 289 (512)
+.. .....+.. +.||++| +++++++++++.+++|+||+||||||+.. ...++.
T Consensus 81 ----~~~----~~~~~~~~~d~~~~~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~ 152 (319)
T 2ptg_A 81 ----PVD----LVFDKIYPLDAVFDTPQDVPPEVSSNKRYAGVGGFTISEVAEAVRADVGQIDILVHSLANGPEVTKPLL 152 (319)
T ss_dssp ------------CCSEEEECCTTCCSGGGSCHHHHCC--CTTSCCCSHHHHHHHHHHHHSCEEEEEEEEECCSSSSSCGG
T ss_pred ----ccc----ccccccccccccccccccccchhcccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCCCCCCccc
Confidence 000 00012222 2334444 56899999999999999999999999753 246788
Q ss_pred CCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCCCCc-chhhHHHHHHHHHHHHHHHHhCC-C
Q 010380 290 QFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLT-AVYGSTKCGLRQLQASLFKESKR-S 367 (512)
Q Consensus 290 ~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~~~~~p~~-~~Y~aSKaAl~~l~~sLa~El~~-~ 367 (512)
+.+.++|++++++|+.|+++++++++|+|++ +|+||++||. ++..+.++. ..|++||+|+++|+++|+.|+++ +
T Consensus 153 ~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~---~g~Iv~isS~-~~~~~~~~~~~~Y~asKaal~~l~~~la~el~~~~ 228 (319)
T 2ptg_A 153 QTSRKGYLAAVSSSSYSFVSLLQHFLPLMKE---GGSALALSYI-ASEKVIPGYGGGMSSAKAALESDCRTLAFEAGRAR 228 (319)
T ss_dssp GCCHHHHHHHHHHHTHHHHHHHHHHGGGEEE---EEEEEEEEEC-C------------------THHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHhHhhHHHHHHHHHHHHHHhc---CceEEEEecc-ccccccCccchhhHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999975 3899999998 566677777 68999999999999999999985 8
Q ss_pred CeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhccccccchhhhhhhhhcCChHHHHHHHHHHhccCccc
Q 010380 368 KVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWF 447 (512)
Q Consensus 368 GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~ 447 (512)
||+||+|+||+|+|+|................ ........+++++..|+++++++.||+++...+.++..+..||++.
T Consensus 229 gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~--~~~~~~~~p~~r~~~peevA~~v~~L~s~~~~~itG~~i~vdGG~~ 306 (319)
T 2ptg_A 229 AVRVNCISAGPLKSRAASAIGKAGDKTFIDLA--IDYSEANAPLQKELESDDVGRAALFLLSPLARAVTGATLYVDNGLH 306 (319)
T ss_dssp CCEEEEEEECCCC---------------------------------CCCHHHHHHHHHHHTSGGGTTCCSCEEEESTTCT
T ss_pred CeeEEEEeeCCccChhhhhcccccchhhHHHH--HHHHhccCCCCCCCCHHHHHHHHHHHhCcccCCccCCEEEECCCce
Confidence 99999999999999986432110000000000 0001123567888999999999999999988777777777777763
|
| >3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-35 Score=282.22 Aligned_cols=219 Identities=20% Similarity=0.221 Sum_probs=180.8
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
+++++|++|||||++|||+++|++|+++|++|++++|+.+ +|+
T Consensus 2 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~-------------------------------------~D~ 44 (223)
T 3uce_A 2 MGSDKTVYVVLGGTSGIGAELAKQLESEHTIVHVASRQTG-------------------------------------LDI 44 (223)
T ss_dssp ---CCEEEEEETTTSHHHHHHHHHHCSTTEEEEEESGGGT-------------------------------------CCT
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEecCCcc-------------------------------------cCC
Confidence 3578999999999999999999999999999999988632 799
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|+++++++++++ +++|+||||||+..+..++.+.+.++|++++++|+.++++++++++|.|++ +|+||++||
T Consensus 45 ~~~~~v~~~~~~~----g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~---~g~iv~~sS 117 (223)
T 3uce_A 45 SDEKSVYHYFETI----GAFDHLIVTAGSYAPAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQ---GGSITLTSG 117 (223)
T ss_dssp TCHHHHHHHHHHH----CSEEEEEECCCCCCCCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEE---EEEEEEECC
T ss_pred CCHHHHHHHHHHh----CCCCEEEECCCCCCCCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccC---CeEEEEecc
Confidence 9999999988754 899999999998744678999999999999999999999999999999975 479999999
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhcc
Q 010380 333 AGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVP 412 (512)
Q Consensus 333 ~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~ 412 (512)
. ++..+.++...|++||+|+++|+++|+.|+++ |+||+|+||+|+|++............. .......+++
T Consensus 118 ~-~~~~~~~~~~~Y~asK~a~~~~~~~la~e~~~--i~vn~v~PG~v~t~~~~~~~~~~~~~~~------~~~~~~~~~~ 188 (223)
T 3uce_A 118 M-LSRKVVANTYVKAAINAAIEATTKVLAKELAP--IRVNAISPGLTKTEAYKGMNADDRDAMY------QRTQSHLPVG 188 (223)
T ss_dssp G-GGTSCCTTCHHHHHHHHHHHHHHHHHHHHHTT--SEEEEEEECSBCSGGGTTSCHHHHHHHH------HHHHHHSTTC
T ss_pred h-hhccCCCCchHHHHHHHHHHHHHHHHHHhhcC--cEEEEEEeCCCcchhhhhcchhhHHHHH------HHHhhcCCCC
Confidence 8 67788899999999999999999999999987 9999999999999997654322211111 2233456788
Q ss_pred ccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 413 RIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 413 r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
++..|+|++.++.||++. .+.++..+..||++
T Consensus 189 ~~~~~~dvA~~~~~l~~~--~~~tG~~i~vdgG~ 220 (223)
T 3uce_A 189 KVGEASDIAMAYLFAIQN--SYMTGTVIDVDGGA 220 (223)
T ss_dssp SCBCHHHHHHHHHHHHHC--TTCCSCEEEESTTG
T ss_pred CccCHHHHHHHHHHHccC--CCCCCcEEEecCCe
Confidence 899999999999998863 23344444444443
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-34 Score=283.02 Aligned_cols=251 Identities=22% Similarity=0.300 Sum_probs=200.1
Q ss_pred ccCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEc-ChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEE
Q 010380 171 EHCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASR-SSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIA 249 (512)
Q Consensus 171 ~~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R-~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~ 249 (512)
..+++++|++|||||++|||+++|++|+++|++|++++| +.+++++..+++.+ .+.++.++.
T Consensus 15 ~~~~~~~k~vlItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~-----------------~~~~~~~~~ 77 (274)
T 1ja9_A 15 ASKPLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKK-----------------LGAQGVAIQ 77 (274)
T ss_dssp -CCTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH-----------------TTCCEEEEE
T ss_pred CCCCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHh-----------------cCCcEEEEE
Confidence 346789999999999999999999999999999999999 77777777666654 346788999
Q ss_pred ccCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEe
Q 010380 250 CDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFN 329 (512)
Q Consensus 250 ~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~ 329 (512)
+|++|+++++++++++.++++++|+||||||+.. ..++.+.+.++|++.+++|+.++++++++++|.|+ + +++||+
T Consensus 78 ~D~~~~~~~~~~~~~~~~~~~~~d~vi~~Ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~--~~~iv~ 153 (274)
T 1ja9_A 78 ADISKPSEVVALFDKAVSHFGGLDFVMSNSGMEV-WCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCR-R--GGRIIL 153 (274)
T ss_dssp CCTTSHHHHHHHHHHHHHHHSCEEEEECCCCCCC-CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEE-E--EEEEEE
T ss_pred ecCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCC-CcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHh-h--CCEEEE
Confidence 9999999999999999999999999999999876 57788899999999999999999999999999997 3 389999
Q ss_pred ecCCCCCC-CCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCC-HHH--
Q 010380 330 MDGAGSGG-SSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICEL-PET-- 405 (512)
Q Consensus 330 vSS~~a~~-~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~-pe~-- 405 (512)
+||. ++. .+.++...|++||++++.|++.++.|+++.||++++|+||+|.|++............. .... ++.
T Consensus 154 ~sS~-~~~~~~~~~~~~Y~~sK~a~~~~~~~~~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~--~~~~~~~~~~ 230 (274)
T 1ja9_A 154 TSSI-AAVMTGIPNHALYAGSKAAVEGFCRAFAVDCGAKGVTVNCIAPGGVKTDMFDENSWHYAPGGY--KGMPQEKIDE 230 (274)
T ss_dssp ECCG-GGTCCSCCSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGTSTTCC--TTCCHHHHHH
T ss_pred EcCh-HhccCCCCCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccccchhccccccccccc--ccCchHHHHH
Confidence 9997 454 67788899999999999999999999999999999999999999986421000000000 0001 111
Q ss_pred --HHHHhccccccchhhhhhhhhcCChHHHHHHHHHHhccCc
Q 010380 406 --VARTLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGR 445 (512)
Q Consensus 406 --vA~~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~ 445 (512)
....+++++..|+|+++++.+|+++...+.++..+..+|+
T Consensus 231 ~~~~~~~~~~~~~~~dva~~i~~l~~~~~~~~~G~~~~v~gG 272 (274)
T 1ja9_A 231 GLANMNPLKRIGYPADIGRAVSALCQEESEWINGQVIKLTGG 272 (274)
T ss_dssp HHHHTSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred HHHhcCCCCCccCHHHHHHHHHHHhCcccccccCcEEEecCC
Confidence 1223466788999999999999987543333333433333
|
| >1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-34 Score=283.66 Aligned_cols=236 Identities=17% Similarity=0.216 Sum_probs=186.8
Q ss_pred ccccccCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEE
Q 010380 167 MVLEEHCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVA 246 (512)
Q Consensus 167 ~~~~~~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~ 246 (512)
.......++++|++|||||++|||+++|++|+++|++|++++|+++.++ + . .++.
T Consensus 9 ~~~~~~~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~-------~-----------------~-~~~~ 63 (249)
T 1o5i_A 9 HHHHMELGIRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLK-------R-----------------S-GHRY 63 (249)
T ss_dssp -------CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH-------H-----------------T-CSEE
T ss_pred hhhhHHhccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHH-------h-----------------h-CCeE
Confidence 3444567789999999999999999999999999999999999873221 1 1 1456
Q ss_pred EEEccCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCe
Q 010380 247 GIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGH 326 (512)
Q Consensus 247 ~v~~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~ 326 (512)
++ +|+ .++++++++++ .++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|.|+++ +.|+
T Consensus 64 ~~-~D~--~~~~~~~~~~~----~~iD~lv~~Ag~~~-~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~ 134 (249)
T 1o5i_A 64 VV-CDL--RKDLDLLFEKV----KEVDILVLNAGGPK-AGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEK-GWGR 134 (249)
T ss_dssp EE-CCT--TTCHHHHHHHS----CCCSEEEECCCCCC-CBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEE
T ss_pred EE-eeH--HHHHHHHHHHh----cCCCEEEECCCCCC-CCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCcE
Confidence 67 999 66777777655 38999999999876 5778899999999999999999999999999999876 4689
Q ss_pred EEeecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHH
Q 010380 327 IFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETV 406 (512)
Q Consensus 327 IV~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~v 406 (512)
||++||. ++..+.++...|++||+|++.|+++++.|++++||+||+|+||+|+|++...... .... ....
T Consensus 135 iv~isS~-~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~----~~~~-----~~~~ 204 (249)
T 1o5i_A 135 IVAITSF-SVISPIENLYTSNSARMALTGFLKTLSFEVAPYGITVNCVAPGWTETERVKELLS----EEKK-----KQVE 204 (249)
T ss_dssp EEEECCG-GGTSCCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTHHHHSC----HHHH-----HHHH
T ss_pred EEEEcch-HhcCCCCCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCCccCcccccch----hhHH-----HHHH
Confidence 9999998 6777888899999999999999999999999999999999999999998532110 0000 0111
Q ss_pred HHHhccccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 407 ARTLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 407 A~~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
...+++++..|+|+++++.||+++...+.++..+..+|++
T Consensus 205 ~~~p~~~~~~~~dvA~~i~~l~s~~~~~~tG~~~~vdgG~ 244 (249)
T 1o5i_A 205 SQIPMRRMAKPEEIASVVAFLCSEKASYLTGQTIVVDGGL 244 (249)
T ss_dssp TTSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTC
T ss_pred hcCCCCCCcCHHHHHHHHHHHcCccccCCCCCEEEECCCc
Confidence 1235678889999999999999987655556566666654
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-33 Score=270.79 Aligned_cols=187 Identities=29% Similarity=0.411 Sum_probs=162.1
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCC
Q 010380 175 AGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCE 254 (512)
Q Consensus 175 l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd 254 (512)
..+|+++||||++|||+++|++|+++|++|++++|+.++++++.+++ .++.++.+|++|
T Consensus 3 ~~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---------------------~~~~~~~~D~~~ 61 (234)
T 2ehd_A 3 GMKGAVLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQALAAEL---------------------EGALPLPGDVRE 61 (234)
T ss_dssp -CCCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS---------------------TTCEEEECCTTC
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---------------------hhceEEEecCCC
Confidence 35789999999999999999999999999999999987766544332 146789999999
Q ss_pred hhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCC
Q 010380 255 PADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAG 334 (512)
Q Consensus 255 ~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~ 334 (512)
+++++++++++.+.++++|+||||||+.. ..++.+.+.++|++.+++|+.+++++++.++|.|+++ +.++||++||.
T Consensus 62 ~~~~~~~~~~~~~~~~~id~li~~Ag~~~-~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~-~~~~iv~isS~- 138 (234)
T 2ehd_A 62 EGDWARAVAAMEEAFGELSALVNNAGVGV-MKPVHELTLEEWRLVLDTNLTGAFLGIRHAVPALLRR-GGGTIVNVGSL- 138 (234)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCCC-CSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTT-TCEEEEEECCT-
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCcCC-CCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCcEEEEECCc-
Confidence 99999999999999999999999999876 5778899999999999999999999999999999876 57899999998
Q ss_pred CCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCccc
Q 010380 335 SGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLL 385 (512)
Q Consensus 335 a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~ 385 (512)
.+..+.++...|++||++++.++++++.|+++.||+|++|+||+|+|++..
T Consensus 139 ~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~ 189 (234)
T 2ehd_A 139 AGKNPFKGGAAYNASKFGLLGLAGAAMLDLREANVRVVNVLPGSVDTGFAG 189 (234)
T ss_dssp TTTSCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEECC--------
T ss_pred hhcCCCCCCchhhHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCCccc
Confidence 567778889999999999999999999999999999999999999999864
|
| >2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma gondii} PDB: 2o50_A 3nj8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-35 Score=296.86 Aligned_cols=262 Identities=16% Similarity=0.174 Sum_probs=193.0
Q ss_pred CCCCCCEEEEECC--CChHHHHHHHHHHHCCCEEEEEEcChhhH--HHHHH--HHHHHHhhhhhhcCCCCcccccCceEE
Q 010380 173 CKAGPRNVVITGS--TRGLGKALAREFLLSGDRVVVASRSSESV--RMTVT--ELEENLKEGMMAAGGSSKKNLVHAKVA 246 (512)
Q Consensus 173 ~~l~gk~vLVTGa--ssGIG~aiA~~La~~Ga~Vvl~~R~~~~l--~~~~~--el~~~~~~~~~~~g~~~~~~~~g~~v~ 246 (512)
+++++|++||||| ++|||+++|++|+++|++|++++|++... .+..+ .+.+ ..+ . ..+... ...++.
T Consensus 5 ~~l~gk~~lVTGa~~s~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~-~~~-~-~~~~~~----~~~~~~ 77 (315)
T 2o2s_A 5 IDLRGQTAFVAGVADSHGYGWAIAKHLASAGARVALGTWPPVLGLFQKSLQSGRLDE-DRK-L-PDGSLI----EFAGVY 77 (315)
T ss_dssp CCCTTCEEEEECCSSSSSHHHHHHHHHHTTTCEEEEEECHHHHHHHHHHHHHTTTHH-HHB-C-TTSCBC----CCSCEE
T ss_pred ccCCCCEEEEeCCCCCCChHHHHHHHHHHCCCEEEEEecccccchhhhhhhhhhhhh-hhh-h-hccccc----cccccc
Confidence 4578999999999 89999999999999999999999874210 00000 0000 000 0 000000 001121
Q ss_pred E----------EEccCCC--------hhhHHHHHHHHHHHcCCCcccccccccCC-CCCCCcCCCHHHHHHHHHhhhhhH
Q 010380 247 G----------IACDVCE--------PADVQKLSNFAVNEFGSIDIWINNAGTNK-GFKPLLQFTNEEIEQIVSTNLVGS 307 (512)
Q Consensus 247 ~----------v~~Dltd--------~~sv~~~~~~i~~~~g~IDvLInnAG~~~-~~~~~~~~s~e~~~~~~~vNv~g~ 307 (512)
. +.+|++| +++++++++++.+++|+||+||||||+.. ...++.+.+.++|++++++|+.|+
T Consensus 78 ~~d~~~~~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~ 157 (315)
T 2o2s_A 78 PLDAAFDKPEDVPQDIKDNKRYAGVDGYTIKEVAVKVKQDLGNIDILVHSLANGPEVTKPLLETSRKGYLAASSNSAYSF 157 (315)
T ss_dssp ECCTTCSSTTSSCHHHHTCGGGSSCCCCSHHHHHHHHHHHHCSEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHH
T ss_pred cccccccccchhhhhhhcccccccCCHHHHHHHHHHHHHhcCCCCEEEECCccCCcCCCCcccCCHHHHHHHHhhhhHHH
Confidence 1 3345554 67999999999999999999999999763 246788999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCCCCc-chhhHHHHHHHHHHHHHHHHhCC-CCeEEEEEeCCcccCCccc
Q 010380 308 ILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLT-AVYGSTKCGLRQLQASLFKESKR-SKVGVHTASPGMVLTDLLL 385 (512)
Q Consensus 308 ~~l~k~~lp~m~~~~~~g~IV~vSS~~a~~~~~p~~-~~Y~aSKaAl~~l~~sLa~El~~-~GIrVn~V~PG~V~T~~~~ 385 (512)
++++++++|+|++ +|+||++||. ++..+.++. ..|++||+|+++|+++|+.|+++ +||+||+|+||+|+|+|..
T Consensus 158 ~~l~~~~~~~m~~---~g~Iv~isS~-~~~~~~~~~~~~Y~asKaal~~l~~~la~el~~~~gIrvn~v~PG~v~T~~~~ 233 (315)
T 2o2s_A 158 VSLLQHFGPIMNE---GGSAVTLSYL-AAERVVPGYGGGMSSAKAALESDTRTLAWEAGQKYGVRVNAISAGPLKSRAAS 233 (315)
T ss_dssp HHHHHHHSTTEEE---EEEEEEEEEG-GGTSCCTTCCTTHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEECCCCCHHHH
T ss_pred HHHHHHHHHHHhc---CCEEEEEecc-cccccCCCccHHHHHHHHHHHHHHHHHHHHhCcccCeEEEEEecccccchhhh
Confidence 9999999999975 3899999998 566777777 58999999999999999999985 8999999999999999854
Q ss_pred CCcchhhhhhhhhhcCCHHHHHHHhccccccchhhhhhhhhcCChHHHHHHHHHHhccCccc
Q 010380 386 SGSTIQNKQMFNIICELPETVARTLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWF 447 (512)
Q Consensus 386 ~~~~~~~~~~~~~~~~~pe~vA~~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~ 447 (512)
.............. ........+++++..|++++..+.||+++...+.++..+..||++.
T Consensus 234 ~~~~~~~~~~~~~~--~~~~~~~~p~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG~~ 293 (315)
T 2o2s_A 234 AIGKSGEKSFIDYA--IDYSYNNAPLRRDLHSDDVGGAALFLLSPLARAVSGVTLYVDNGLH 293 (315)
T ss_dssp HTTCSSSSCHHHHH--HHHHHHHSSSCCCCCHHHHHHHHHHHTSGGGTTCCSCEEEESTTGG
T ss_pred hccccccchhHHHH--HHHHhccCCCCCCCCHHHHHHHHHHHhCchhccCcCCEEEECCCee
Confidence 21100000000000 0011234577889999999999999999988777888888888764
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-34 Score=277.15 Aligned_cols=239 Identities=21% Similarity=0.280 Sum_probs=191.7
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
.++++|+++||||++|||+++|++|+++|++|++++|+.+++++..+++ ..+.++.+|+
T Consensus 3 ~~~~~~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---------------------~~~~~~~~D~ 61 (244)
T 1cyd_A 3 LNFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKEC---------------------PGIEPVCVDL 61 (244)
T ss_dssp CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS---------------------TTCEEEECCT
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc---------------------cCCCcEEecC
Confidence 3578999999999999999999999999999999999987765443321 1245569999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|+++++++++ .++++|+||||||+.. ..++.+.+.++|++.+++|+.++++++++++|.|.+++..++||++||
T Consensus 62 ~~~~~~~~~~~----~~~~id~vi~~Ag~~~-~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~iv~~sS 136 (244)
T 1cyd_A 62 GDWDATEKALG----GIGPVDLLVNNAALVI-MQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSS 136 (244)
T ss_dssp TCHHHHHHHHT----TCCCCSEEEECCCCCC-CBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred CCHHHHHHHHH----HcCCCCEEEECCcccC-CCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEEcc
Confidence 99999988776 5689999999999876 577888999999999999999999999999999987632689999999
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhcc
Q 010380 333 AGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVP 412 (512)
Q Consensus 333 ~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~ 412 (512)
. .+..+.++...|++||++++.|++.++.|+++.||+|++|+||+|.|++....... .... .......+++
T Consensus 137 ~-~~~~~~~~~~~Y~~sK~a~~~~~~~~a~~~~~~gi~v~~v~pg~v~t~~~~~~~~~--~~~~------~~~~~~~~~~ 207 (244)
T 1cyd_A 137 M-VAHVTFPNLITYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGKKVSAD--PEFA------RKLKERHPLR 207 (244)
T ss_dssp G-GGTSCCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTHHHHHHTCC--HHHH------HHHHHHSTTS
T ss_pred h-hhcCCCCCcchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCccccccccC--HHHH------HHHHhcCCcc
Confidence 8 56777888899999999999999999999999999999999999999975311000 0000 0112234567
Q ss_pred ccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 413 RIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 413 r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
++..|+|+++++.+++++.....++..+..+|++
T Consensus 208 ~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG~ 241 (244)
T 1cyd_A 208 KFAEVEDVVNSILFLLSDRSASTSGGGILVDAGY 241 (244)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCSSEEEESTTG
T ss_pred CCCCHHHHHHHHHHHhCchhhcccCCEEEECCCc
Confidence 7889999999999999876544444444444443
|
| >1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-34 Score=291.84 Aligned_cols=257 Identities=17% Similarity=0.159 Sum_probs=190.7
Q ss_pred CCCCCCEEEEECCC--ChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHH-HHhhhhhhcCCCCcccccCceEEEEE
Q 010380 173 CKAGPRNVVITGST--RGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEE-NLKEGMMAAGGSSKKNLVHAKVAGIA 249 (512)
Q Consensus 173 ~~l~gk~vLVTGas--sGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~-~~~~~~~~~g~~~~~~~~g~~v~~v~ 249 (512)
+++++|++|||||+ +|||+++|++|+++|++|++++|++..-. ....... ...+ .... ...........+.
T Consensus 4 ~~l~~k~~lVTGas~~~GIG~aia~~la~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~ 77 (297)
T 1d7o_A 4 IDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNI-FETSLRRGKFDQ-SRVL----PDGSLMEIKKVYP 77 (297)
T ss_dssp CCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHHHH-HHHHHHTTTTTG-GGBC----TTSSBCCEEEEEE
T ss_pred cccCCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEeeccccchh-hhhhhhhhHhhh-hhhh----ccccccccccccc
Confidence 46889999999999 99999999999999999999998642210 0000000 0000 0000 0000000122233
Q ss_pred c------------cCCC--------hhhHHHHHHHHHHHcCCCcccccccccCC-CCCCCcCCCHHHHHHHHHhhhhhHH
Q 010380 250 C------------DVCE--------PADVQKLSNFAVNEFGSIDIWINNAGTNK-GFKPLLQFTNEEIEQIVSTNLVGSI 308 (512)
Q Consensus 250 ~------------Dltd--------~~sv~~~~~~i~~~~g~IDvLInnAG~~~-~~~~~~~~s~e~~~~~~~vNv~g~~ 308 (512)
+ |++| +++++++++++.+++|++|+||||||+.. ...++.+.+.++|++++++|+.|++
T Consensus 78 ~~~~~~~~~dv~~Dv~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~ 157 (297)
T 1d7o_A 78 LDAVFDNPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFV 157 (297)
T ss_dssp ECTTCCSGGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHH
T ss_pred cceeccchhhhhhhhhccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCccCCCCcccCCHHHHHHHHHHhhhHHH
Confidence 3 3333 77999999999999999999999999753 2467888999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCeEEeecCCCCCCCCCCCc-chhhHHHHHHHHHHHHHHHHhCC-CCeEEEEEeCCcccCCcccC
Q 010380 309 LCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLT-AVYGSTKCGLRQLQASLFKESKR-SKVGVHTASPGMVLTDLLLS 386 (512)
Q Consensus 309 ~l~k~~lp~m~~~~~~g~IV~vSS~~a~~~~~p~~-~~Y~aSKaAl~~l~~sLa~El~~-~GIrVn~V~PG~V~T~~~~~ 386 (512)
+++++++|+|++ +|+||++||. ++..+.|+. ..|++||+|+++|+++|+.|+++ +||+||+|+||+|+|+|...
T Consensus 158 ~l~~~~~~~m~~---~g~iv~isS~-~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~vn~v~PG~v~T~~~~~ 233 (297)
T 1d7o_A 158 SLLSHFLPIMNP---GGASISLTYI-ASERIIPGYGGGMSSAKAALESDTRVLAFEAGRKQNIRVNTISAGPLGSRAAKA 233 (297)
T ss_dssp HHHHHHGGGEEE---EEEEEEEECG-GGTSCCTTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCBCCCSSC
T ss_pred HHHHHHHHHhcc---CceEEEEecc-ccccCCCCcchHHHHHHHHHHHHHHHHHHHhCcccCcEEEEEeccccccchhhh
Confidence 999999999975 3899999997 566777777 69999999999999999999985 89999999999999999654
Q ss_pred CcchhhhhhhhhhcCCHHHHHHHhccccccchhhhhhhhhcCChHHHHHHHHHHhccCccc
Q 010380 387 GSTIQNKQMFNIICELPETVARTLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWF 447 (512)
Q Consensus 387 ~~~~~~~~~~~~~~~~pe~vA~~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~ 447 (512)
... ..... .......+++++..|+|+++.+.||+++...+.++..+..+|++.
T Consensus 234 ~~~--~~~~~------~~~~~~~p~~r~~~pedvA~~v~~l~s~~~~~itG~~i~vdgG~~ 286 (297)
T 1d7o_A 234 IGF--IDTMI------EYSYNNAPIQKTLTADEVGNAAAFLVSPLASAITGATIYVDNGLN 286 (297)
T ss_dssp CSH--HHHHH------HHHHHHSSSCCCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTGG
T ss_pred ccc--cHHHH------HHhhccCCCCCCCCHHHHHHHHHHHhCccccCCCCCEEEECCCce
Confidence 211 01110 111223567788999999999999999887666777777777663
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-33 Score=278.12 Aligned_cols=230 Identities=26% Similarity=0.336 Sum_probs=183.4
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
++++|+++||||++|||+++|++|+++|++|++++|+.+++++..+++.+.. .+.++.++.+|++
T Consensus 4 m~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~---------------~~~~~~~~~~D~~ 68 (267)
T 2gdz_A 4 MVNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQF---------------EPQKTLFIQCDVA 68 (267)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTS---------------CGGGEEEEECCTT
T ss_pred ccCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhc---------------CCCceEEEecCCC
Confidence 4689999999999999999999999999999999999888776666553310 1346889999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCC--CCCeEEeec
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQP--KGGHIFNMD 331 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~--~~g~IV~vS 331 (512)
|+++++++++.+.+++|++|+||||||+.. .++|++.+++|+.+++.+++.++|.|++++ +.|+||++|
T Consensus 69 ~~~~v~~~~~~~~~~~g~id~lv~~Ag~~~---------~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~is 139 (267)
T 2gdz_A 69 DQQQLRDTFRKVVDHFGRLDILVNNAGVNN---------EKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMS 139 (267)
T ss_dssp SHHHHHHHHHHHHHHHSCCCEEEECCCCCC---------SSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEEC
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCC---------hhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeC
Confidence 999999999999999999999999999742 357899999999999999999999998752 268999999
Q ss_pred CCCCCCCCCCCcchhhHHHHHHHHHHHHH--HHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHH-H
Q 010380 332 GAGSGGSSTPLTAVYGSTKCGLRQLQASL--FKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVA-R 408 (512)
Q Consensus 332 S~~a~~~~~p~~~~Y~aSKaAl~~l~~sL--a~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA-~ 408 (512)
|. ++..+.++...|++||+|++.|++++ +.|+++.||+||+|+||+|+|++........ ...... ...+... .
T Consensus 140 S~-~~~~~~~~~~~Y~~sK~a~~~~~~~~ala~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~--~~~~~~-~~~~~~~~~ 215 (267)
T 2gdz_A 140 SL-AGLMPVAQQPVYCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAILESIEKEE--NMGQYI-EYKDHIKDM 215 (267)
T ss_dssp CG-GGTSCCTTCHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESCBSSHHHHGGGCHH--HHGGGG-GGHHHHHHH
T ss_pred Cc-cccCCCCCCchHHHHHHHHHHHHHHHHHHHHhccCCcEEEEEecCcCcchhhhcccccc--ccchhh-hHHHHHHHH
Confidence 98 67777888999999999999999995 6899999999999999999999864321110 000000 0011111 1
Q ss_pred HhccccccchhhhhhhhhcCChH
Q 010380 409 TLVPRIRVVKGSGKAINYLTPPR 431 (512)
Q Consensus 409 ~~l~r~~~~~~va~~v~~L~s~~ 431 (512)
....++..|+|+++.+.||+++.
T Consensus 216 ~~~~~~~~~~dvA~~v~~l~s~~ 238 (267)
T 2gdz_A 216 IKYYGILDPPLIANGLITLIEDD 238 (267)
T ss_dssp HHHHCCBCHHHHHHHHHHHHHCT
T ss_pred hccccCCCHHHHHHHHHHHhcCc
Confidence 11123568999999999998765
|
| >1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-34 Score=282.81 Aligned_cols=215 Identities=12% Similarity=0.036 Sum_probs=178.2
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
+.++|++|||||++|||+++|++|+++|++|++++|++++.+ ....++.+|++
T Consensus 4 ~~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~---------------------------~~~~~~~~D~~ 56 (241)
T 1dhr_A 4 SGEARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEA---------------------------SASVIVKMTDS 56 (241)
T ss_dssp --CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTTS---------------------------SEEEECCCCSC
T ss_pred cCCCCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCChhhcc---------------------------CCcEEEEcCCC
Confidence 356899999999999999999999999999999999875421 13567899999
Q ss_pred ChhhHHHHHHHHHHHc--CCCcccccccccCCCCCCC-cCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEee
Q 010380 254 EPADVQKLSNFAVNEF--GSIDIWINNAGTNKGFKPL-LQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNM 330 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~--g~IDvLInnAG~~~~~~~~-~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~v 330 (512)
|+++++++++++.+++ +++|+||||||+.. ..++ .+.+.++|++++++|+.++++++++++|.|++ +|+||++
T Consensus 57 ~~~~v~~~~~~~~~~~~~g~iD~lv~~Ag~~~-~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~---~g~iv~i 132 (241)
T 1dhr_A 57 FTEQADQVTAEVGKLLGDQKVDAILCVAGGWA-GGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKE---GGLLTLA 132 (241)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEECCCCCC-CBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred CHHHHHHHHHHHHHHhCCCCCCEEEEcccccC-CCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhcc---CCEEEEE
Confidence 9999999999999999 79999999999876 4666 78889999999999999999999999999964 4899999
Q ss_pred cCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhC--CCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHH
Q 010380 331 DGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESK--RSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVAR 408 (512)
Q Consensus 331 SS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~--~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~ 408 (512)
||. ++..+.++...|++||+|++.|+++++.|++ ++||+||+|+||+|+|+|....... .
T Consensus 133 sS~-~~~~~~~~~~~Y~asK~a~~~~~~~la~e~~~~~~gi~v~~v~PG~v~T~~~~~~~~~--~--------------- 194 (241)
T 1dhr_A 133 GAK-AALDGTPGMIGYGMAKGAVHQLCQSLAGKNSGMPSGAAAIAVLPVTLDTPMNRKSMPE--A--------------- 194 (241)
T ss_dssp CCG-GGGSCCTTBHHHHHHHHHHHHHHHHHTSTTSSCCTTCEEEEEEESCEECHHHHHHSTT--S---------------
T ss_pred CCH-HHccCCCCchHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEecCcccCccccccCcc--h---------------
Confidence 998 6677888999999999999999999999999 8999999999999999985321000 0
Q ss_pred HhccccccchhhhhhhhhcCChHHHHHHHH
Q 010380 409 TLVPRIRVVKGSGKAINYLTPPRILLALVT 438 (512)
Q Consensus 409 ~~l~r~~~~~~va~~v~~L~s~~~~~~~~~ 438 (512)
...+...|+++++.+.|++++...+.++.
T Consensus 195 -~~~~~~~~~~vA~~v~~l~~~~~~~~~G~ 223 (241)
T 1dhr_A 195 -DFSSWTPLEFLVETFHDWITGNKRPNSGS 223 (241)
T ss_dssp -CGGGSEEHHHHHHHHHHHHTTTTCCCTTC
T ss_pred -hhccCCCHHHHHHHHHHHhcCCCcCccce
Confidence 01123446777778888887654333333
|
| >1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-34 Score=290.51 Aligned_cols=195 Identities=19% Similarity=0.236 Sum_probs=163.9
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCCh
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEP 255 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~ 255 (512)
++|++|||||++|||+++|++|+++|++|++++|+...++...+.+.+.... ...+.++.++.+|++|+
T Consensus 1 ~~k~vlVTGas~GIG~ala~~L~~~G~~v~~v~r~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~Dv~d~ 69 (327)
T 1jtv_A 1 ARTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARAL-----------ACPPGSLETLQLDVRDS 69 (327)
T ss_dssp CCEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHT-----------TCCTTSEEEEECCTTCH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCceEEEEeecCcHHHHHHHHHHhhhc-----------cCCCCceEEEEecCCCH
Confidence 3689999999999999999999999999999888765544443333221000 00235788999999999
Q ss_pred hhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCC
Q 010380 256 ADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGS 335 (512)
Q Consensus 256 ~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a 335 (512)
++++++++++ .++++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|+|+++ +.|+||++||. +
T Consensus 70 ~~v~~~~~~~--~~g~iD~lVnnAG~~~-~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~-~~g~IV~isS~-~ 144 (327)
T 1jtv_A 70 KSVAAARERV--TEGRVDVLVCNAGLGL-LGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRR-GSGRVLVTGSV-G 144 (327)
T ss_dssp HHHHHHHHTC--TTSCCSEEEECCCCCC-CSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEEEEG-G
T ss_pred HHHHHHHHHH--hcCCCCEEEECCCcCC-CCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCEEEEECCc-c
Confidence 9999999987 3589999999999876 5788899999999999999999999999999999876 57899999998 6
Q ss_pred CCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccC
Q 010380 336 GGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLS 386 (512)
Q Consensus 336 ~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~ 386 (512)
+..+.++...|++||+|+++|+++|+.|++++||+||+|+||+|+|+|...
T Consensus 145 ~~~~~~~~~~Y~aSK~a~~~~~~~la~el~~~gI~v~~v~PG~v~T~~~~~ 195 (327)
T 1jtv_A 145 GLMGLPFNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTAFMEK 195 (327)
T ss_dssp GTSCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC-----
T ss_pred cccCCCCChHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCcccChHHhh
Confidence 777788899999999999999999999999999999999999999999754
|
| >3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-34 Score=280.18 Aligned_cols=217 Identities=18% Similarity=0.234 Sum_probs=152.6
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
|++++|++|||||++|||+++|++|++ |++|++++|+.+++++..+ ..++.++.+|+
T Consensus 1 m~l~~k~vlITGas~gIG~~~a~~l~~-g~~v~~~~r~~~~~~~~~~----------------------~~~~~~~~~D~ 57 (245)
T 3e9n_A 1 MSLKKKIAVVTGATGGMGIEIVKDLSR-DHIVYALGRNPEHLAALAE----------------------IEGVEPIESDI 57 (245)
T ss_dssp -----CEEEEESTTSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHHT----------------------STTEEEEECCH
T ss_pred CCCCCCEEEEEcCCCHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHh----------------------hcCCcceeccc
Confidence 457899999999999999999999988 9999999999877654322 13578899999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
++.++ .+.+.+..++++++|+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|.|+++ +|+||++||
T Consensus 58 ~~~~~-~~~~~~~~~~~~~id~lv~~Ag~~~-~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~--~g~iv~isS 133 (245)
T 3e9n_A 58 VKEVL-EEGGVDKLKNLDHVDTLVHAAAVAR-DTTIEAGSVAEWHAHLDLNVIVPAELSRQLLPALRAA--SGCVIYINS 133 (245)
T ss_dssp HHHHH-TSSSCGGGTTCSCCSEEEECC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEC-
T ss_pred chHHH-HHHHHHHHHhcCCCCEEEECCCcCC-CCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhc--CCeEEEEcC
Confidence 98876 4444455567899999999999987 5778889999999999999999999999999999875 489999999
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhcc
Q 010380 333 AGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVP 412 (512)
Q Consensus 333 ~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~ 412 (512)
. ++..+.++...|++||+|+++|+++|+.|++++||+||+|+||+|+|+|......... ......
T Consensus 134 ~-~~~~~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~--------------~~~~~~ 198 (245)
T 3e9n_A 134 G-AGNGPHPGNTIYAASKHALRGLADAFRKEEANNGIRVSTVSPGPTNTPMLQGLMDSQG--------------TNFRPE 198 (245)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC------------------------------CCG
T ss_pred c-ccccCCCCchHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCCccCchhhhhhhhhh--------------cccccc
Confidence 8 6778889999999999999999999999999999999999999999998754321111 112234
Q ss_pred ccccchhhhhhhhhcCChH
Q 010380 413 RIRVVKGSGKAINYLTPPR 431 (512)
Q Consensus 413 r~~~~~~va~~v~~L~s~~ 431 (512)
+...|+|+++++.||+...
T Consensus 199 ~~~~p~dvA~~i~~l~~~~ 217 (245)
T 3e9n_A 199 IYIEPKEIANAIRFVIDAG 217 (245)
T ss_dssp GGSCHHHHHHHHHHHHTSC
T ss_pred cCCCHHHHHHHHHHHHcCC
Confidence 5567778888887877643
|
| >3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-34 Score=314.15 Aligned_cols=234 Identities=23% Similarity=0.282 Sum_probs=180.4
Q ss_pred cccCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEc---------ChhhHHHHHHHHHHHHhhhhhhcCCCCcccc
Q 010380 170 EEHCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASR---------SSESVRMTVTELEENLKEGMMAAGGSSKKNL 240 (512)
Q Consensus 170 ~~~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R---------~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~ 240 (512)
...++++||++|||||++|||+++|++|+++|++|++++| +.+.++++.+++.+.
T Consensus 12 ~~~~~l~gk~~lVTGas~GIG~aiA~~La~~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~i~~~---------------- 75 (613)
T 3oml_A 12 DGKLRYDGRVAVVTGAGAGLGREYALLFAERGAKVVVNDLGGTHSGDGASQRAADIVVDEIRKA---------------- 75 (613)
T ss_dssp ---CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEC--------------CHHHHHHHHHHT----------------
T ss_pred ccccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcccccccCCHHHHHHHHHHHHHh----------------
Confidence 3457899999999999999999999999999999999988 667777777777652
Q ss_pred cCceEEEEEccCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHh
Q 010380 241 VHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRD 320 (512)
Q Consensus 241 ~g~~v~~v~~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~ 320 (512)
+.. ..+|++|.++++++++++.+.+|+||+||||||+.. ..++.+.+.++|++++++|+.|+++++++++|+|++
T Consensus 76 -~~~---~~~D~~d~~~~~~~~~~~~~~~g~iDiLVnnAGi~~-~~~~~~~~~~~~~~~~~vNl~g~~~l~~~~~p~m~~ 150 (613)
T 3oml_A 76 -GGE---AVADYNSVIDGAKVIETAIKAFGRVDILVNNAGILR-DRSLVKTSEQDWNLVNDVHLKGSFKCTQAAFPYMKK 150 (613)
T ss_dssp -TCC---EEECCCCGGGHHHHHC----------CEECCCCCCC-CCCSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred -CCe---EEEEeCCHHHHHHHHHHHHHHCCCCcEEEECCCCCC-CCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 248999999999999999999999999999999987 678899999999999999999999999999999998
Q ss_pred CCCCCeEEeecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhc
Q 010380 321 QPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIIC 400 (512)
Q Consensus 321 ~~~~g~IV~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~ 400 (512)
+ +.|+||++||. ++..+.++...|++||+|+++|+++|+.|++++||+||+|+||++ |+|......
T Consensus 151 ~-~~g~IV~isS~-a~~~~~~~~~~Y~asKaal~~lt~~la~e~~~~gI~vn~v~Pg~~-t~~~~~~~~----------- 216 (613)
T 3oml_A 151 Q-NYGRIIMTSSN-SGIYGNFGQVNYTAAKMGLIGLANTVAIEGARNNVLCNVIVPTAA-SRMTEGILP----------- 216 (613)
T ss_dssp T-TCEEEEEECCH-HHHHCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-------CCCCC-----------
T ss_pred c-CCCEEEEECCH-HHcCCCCCChHHHHHHHHHHHHHHHHHHHhCccCeEEEEEECCCC-Chhhhhccc-----------
Confidence 7 57999999997 677788899999999999999999999999999999999999975 666533211
Q ss_pred CCHHHHHHHhccccccchhhhhhhhhcCChHHHHHHHHHHhccCccc
Q 010380 401 ELPETVARTLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWF 447 (512)
Q Consensus 401 ~~pe~vA~~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~ 447 (512)
+. +.+...|++++..+.||+++. .+.++..+..+|+|.
T Consensus 217 ---~~-----~~~~~~pedvA~~v~~L~s~~-~~~tG~~i~vdGG~~ 254 (613)
T 3oml_A 217 ---DI-----LFNELKPKLIAPVVAYLCHES-CEDNGSYIESAAGWA 254 (613)
T ss_dssp ---HH-----HHTTCCGGGTHHHHHHTTSTT-CCCCSCEEEEETTEE
T ss_pred ---hh-----hhhcCCHHHHHHHHHHhcCCC-cCCCceEEEECCCeE
Confidence 11 112247899999999999987 556777777777653
|
| >1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-32 Score=274.46 Aligned_cols=219 Identities=20% Similarity=0.287 Sum_probs=185.8
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
.++++|+++||||++|||+++|++|+++|++|++++|++++++++.+++.+. .+.++.++.+|+
T Consensus 24 ~~~~~k~vlITGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~----------------~~~~~~~~~~Dl 87 (286)
T 1xu9_A 24 EMLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLEL----------------GAASAHYIAGTM 87 (286)
T ss_dssp GGGTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH----------------TCSEEEEEECCT
T ss_pred hhcCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHh----------------CCCceEEEeCCC
Confidence 3478999999999999999999999999999999999999888877776542 124788999999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccc-cccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeec
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINN-AGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD 331 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInn-AG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vS 331 (512)
+|+++++++++++.+++|++|+|||| ||... .++.+.+.+++++++++|+.|+++++++++|.|+++ .|+||++|
T Consensus 88 ~d~~~v~~~~~~~~~~~g~iD~li~naag~~~--~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--~g~iv~is 163 (286)
T 1xu9_A 88 EDMTFAEQFVAQAGKLMGGLDMLILNHITNTS--LNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQS--NGSIVVVS 163 (286)
T ss_dssp TCHHHHHHHHHHHHHHHTSCSEEEECCCCCCC--CCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCccCCC--CccccCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHC--CCEEEEEC
Confidence 99999999999999999999999999 57653 345667899999999999999999999999999764 58999999
Q ss_pred CCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHh--CCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHH
Q 010380 332 GAGSGGSSTPLTAVYGSTKCGLRQLQASLFKES--KRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVART 409 (512)
Q Consensus 332 S~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El--~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~ 409 (512)
|. ++..+.++...|++||++++.|+++++.|+ .+.||+|++|+||+|+|++....... .......+|+++|+.
T Consensus 164 S~-~~~~~~~~~~~Y~asK~a~~~~~~~l~~e~~~~~~~i~v~~v~Pg~v~t~~~~~~~~~----~~~~~~~~~~~vA~~ 238 (286)
T 1xu9_A 164 SL-AGKVAYPMVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTETAMKAVSG----IVHMQAAPKEECALE 238 (286)
T ss_dssp EG-GGTSCCTTCHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEECCBCCHHHHHHSCG----GGGGGCBCHHHHHHH
T ss_pred Cc-ccccCCCCccHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeecCccCChhHHHhccc----cccCCCCCHHHHHHH
Confidence 98 677788899999999999999999999999 67899999999999999986421110 011223479999998
Q ss_pred hcccccc
Q 010380 410 LVPRIRV 416 (512)
Q Consensus 410 ~l~r~~~ 416 (512)
++..+..
T Consensus 239 i~~~~~~ 245 (286)
T 1xu9_A 239 IIKGGAL 245 (286)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 8865543
|
| >1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-34 Score=278.38 Aligned_cols=179 Identities=17% Similarity=0.150 Sum_probs=161.3
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCC
Q 010380 175 AGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCE 254 (512)
Q Consensus 175 l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd 254 (512)
+++|++|||||++|||+++|++|+++|++|++++|++++.+ ....++.+|++|
T Consensus 1 m~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~---------------------------~~~~~~~~D~~~ 53 (236)
T 1ooe_A 1 MSSGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQA---------------------------DSNILVDGNKNW 53 (236)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTTS---------------------------SEEEECCTTSCH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecCccccc---------------------------cccEEEeCCCCC
Confidence 36789999999999999999999999999999999876421 235678999999
Q ss_pred hhhHHHHHHHHHHHc--CCCcccccccccCCCCCCC-cCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeec
Q 010380 255 PADVQKLSNFAVNEF--GSIDIWINNAGTNKGFKPL-LQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD 331 (512)
Q Consensus 255 ~~sv~~~~~~i~~~~--g~IDvLInnAG~~~~~~~~-~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vS 331 (512)
+++++++++++.+.+ +++|+||||||+.. ..++ .+.+.++|++++++|+.++++++++++|.|++ +|+||++|
T Consensus 54 ~~~~~~~~~~~~~~~~~g~id~lv~~Ag~~~-~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~---~g~iv~is 129 (236)
T 1ooe_A 54 TEQEQSILEQTASSLQGSQVDGVFCVAGGWA-GGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKP---GGLLQLTG 129 (236)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEECCCCCC-CBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEEC
T ss_pred HHHHHHHHHHHHHHhCCCCCCEEEECCcccC-CCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhcc---CCEEEEEC
Confidence 999999999999999 79999999999876 4666 78889999999999999999999999999964 47999999
Q ss_pred CCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhC--CCCeEEEEEeCCcccCCccc
Q 010380 332 GAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESK--RSKVGVHTASPGMVLTDLLL 385 (512)
Q Consensus 332 S~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~--~~GIrVn~V~PG~V~T~~~~ 385 (512)
|. ++..+.++...|++||+|+++|+++++.|++ ++||+||+|+||+|+|+|..
T Consensus 130 S~-~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~gi~v~~v~Pg~v~t~~~~ 184 (236)
T 1ooe_A 130 AA-AAMGPTPSMIGYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLDTPMNR 184 (236)
T ss_dssp CG-GGGSCCTTBHHHHHHHHHHHHHHHHHHSTTSSCCTTCEEEEEEESCBCCHHHH
T ss_pred ch-hhccCCCCcHHHHHHHHHHHHHHHHHHHHhcccCCCeEEEEEecCcccCcchh
Confidence 98 5677888999999999999999999999998 99999999999999999853
|
| >1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-33 Score=272.43 Aligned_cols=187 Identities=23% Similarity=0.342 Sum_probs=162.2
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEcc
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDR-VVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACD 251 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~-Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~D 251 (512)
|++++|+++||||++|||+++|++|+++|++ |++++|+.+. +..+++.+.. .+.++.++.+|
T Consensus 1 m~l~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~~~--~~~~~l~~~~---------------~~~~~~~~~~D 63 (254)
T 1sby_A 1 MDLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENP--TALAELKAIN---------------PKVNITFHTYD 63 (254)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCH--HHHHHHHHHC---------------TTSEEEEEECC
T ss_pred CCCCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCchH--HHHHHHHHhC---------------CCceEEEEEEe
Confidence 3578999999999999999999999999996 9999998642 2234443321 13578899999
Q ss_pred CCCh-hhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCC--CCCeEE
Q 010380 252 VCEP-ADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQP--KGGHIF 328 (512)
Q Consensus 252 ltd~-~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~--~~g~IV 328 (512)
++|+ ++++++++++.++++++|+||||||+. +.++|++++++|+.|+++++++++|.|.++. ..|+||
T Consensus 64 ~~~~~~~~~~~~~~~~~~~g~id~lv~~Ag~~---------~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv 134 (254)
T 1sby_A 64 VTVPVAESKKLLKKIFDQLKTVDILINGAGIL---------DDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIA 134 (254)
T ss_dssp TTSCHHHHHHHHHHHHHHHSCCCEEEECCCCC---------CTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEE
T ss_pred cCCChHHHHHHHHHHHHhcCCCCEEEECCccC---------CHHHHhhhheeeehhHHHHHHHHHHHHHHhcCCCCCEEE
Confidence 9998 999999999999999999999999973 3467999999999999999999999997652 258999
Q ss_pred eecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccC
Q 010380 329 NMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLS 386 (512)
Q Consensus 329 ~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~ 386 (512)
++||. ++..+.++...|++||+|++.|+++++.|+.+.||+||+|+||+|+|++...
T Consensus 135 ~isS~-~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~Pg~v~t~~~~~ 191 (254)
T 1sby_A 135 NICSV-TGFNAIHQVPVYSASKAAVVSFTNSLAKLAPITGVTAYSINPGITRTPLVHT 191 (254)
T ss_dssp EECCG-GGTSCCTTSHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEEEECSEESHHHHS
T ss_pred EECch-hhccCCCCchHHHHHHHHHHHHHHHHHHHhccCCeEEEEEecCCccCccccc
Confidence 99998 6777888899999999999999999999998889999999999999998653
|
| >1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-33 Score=270.95 Aligned_cols=190 Identities=18% Similarity=0.280 Sum_probs=161.4
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC--CEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 175 AGPRNVVITGSTRGLGKALAREFLLSG--DRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 175 l~gk~vLVTGassGIG~aiA~~La~~G--a~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
+++|+++||||++|||+++|++|+++| ++|++++|+.++++++ .+. .+.++.++.+|+
T Consensus 1 m~~k~vlItGasggiG~~la~~l~~~g~~~~V~~~~r~~~~~~~l----~~~----------------~~~~~~~~~~D~ 60 (250)
T 1yo6_A 1 MSPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATEL----KSI----------------KDSRVHVLPLTV 60 (250)
T ss_dssp CCCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHH----HTC----------------CCTTEEEEECCT
T ss_pred CCCCEEEEecCCchHHHHHHHHHHhcCCCcEEEEEecCHHHHHHH----Hhc----------------cCCceEEEEeec
Confidence 367999999999999999999999999 9999999998776432 110 135788999999
Q ss_pred CChhhHHHHHHHHHHHcC--CCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhC------CC-
Q 010380 253 CEPADVQKLSNFAVNEFG--SIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQ------PK- 323 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g--~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~------~~- 323 (512)
+|+++++++++++.++++ ++|+||||||+..+..++.+.+.+++++++++|+.++++++++++|.|.++ +.
T Consensus 61 ~~~~~~~~~~~~~~~~~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~ 140 (250)
T 1yo6_A 61 TCDKSLDTFVSKVGEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQL 140 (250)
T ss_dssp TCHHHHHHHHHHHHHHHGGGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCcEEEECCcccCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccccCCCcc
Confidence 999999999999999998 999999999987534678889999999999999999999999999999764 21
Q ss_pred ---CCeEEeecCCCCCCCCC-------CCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCccc
Q 010380 324 ---GGHIFNMDGAGSGGSST-------PLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLL 385 (512)
Q Consensus 324 ---~g~IV~vSS~~a~~~~~-------p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~ 385 (512)
.++||++||. .+..+. ++...|++||++++.|+++++.|+.+.||+|++|+||+|+|+|..
T Consensus 141 ~~~~~~iv~isS~-~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~ 211 (250)
T 1yo6_A 141 SVSRAAVITISSG-LGSITDNTSGSAQFPVLAYRMSKAAINMFGRTLAVDLKDDNVLVVNFCPGWVQTNLGG 211 (250)
T ss_dssp CTTTCEEEEECCG-GGCSTTCCSTTSSSCBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECCCC------
T ss_pred cCCCcEEEEeccC-ccccCCcccccccCCccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEcCCceecCCCC
Confidence 6899999997 444444 577899999999999999999999999999999999999999863
|
| >1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-32 Score=271.29 Aligned_cols=215 Identities=20% Similarity=0.225 Sum_probs=176.9
Q ss_pred cccCCCCCCEEEEECCCChHHHHHHHHHHHCC---CEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEE
Q 010380 170 EEHCKAGPRNVVITGSTRGLGKALAREFLLSG---DRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVA 246 (512)
Q Consensus 170 ~~~~~l~gk~vLVTGassGIG~aiA~~La~~G---a~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~ 246 (512)
....++++|++|||||++|||+++|++|+++| ++|++++|+.++++.+ +++.+ .+.++.
T Consensus 14 ~~~~~~~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~~~~~~~-~~l~~-----------------~~~~~~ 75 (267)
T 1sny_A 14 LVPRGSHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKEL-EDLAK-----------------NHSNIH 75 (267)
T ss_dssp ------CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHH-HHHHH-----------------HCTTEE
T ss_pred ccccCCCCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecChhhhHHH-HHhhc-----------------cCCceE
Confidence 34556889999999999999999999999999 9999999998776533 34433 235788
Q ss_pred EEEccCCChhhHHHHHHHHHHHcC--CCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhC---
Q 010380 247 GIACDVCEPADVQKLSNFAVNEFG--SIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQ--- 321 (512)
Q Consensus 247 ~v~~Dltd~~sv~~~~~~i~~~~g--~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~--- 321 (512)
++.+|++|+++++++++++.+.++ ++|+||||||+..+..++.+.+.+++++++++|+.++++++++++|.|.++
T Consensus 76 ~~~~Dl~~~~~v~~~~~~~~~~~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~ 155 (267)
T 1sny_A 76 ILEIDLRNFDAYDKLVADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKA 155 (267)
T ss_dssp EEECCTTCGGGHHHHHHHHHHHHGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCChHHHHHHHHHHHHhcCCCCccEEEECCCcCCCccccccCCHHHHHHHHhhhchHHHHHHHHHHHHHhhcccc
Confidence 999999999999999999999998 899999999987534678889999999999999999999999999999864
Q ss_pred ---CC----CCeEEeecCCCCCCCCC---CCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchh
Q 010380 322 ---PK----GGHIFNMDGAGSGGSST---PLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQ 391 (512)
Q Consensus 322 ---~~----~g~IV~vSS~~a~~~~~---p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~ 391 (512)
.. .++||++||. .+..+. ++...|++||++++.|+++++.|++++||+|++|+||+|+|+|....
T Consensus 156 ~~~~~~~~~~~~iv~isS~-~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~---- 230 (267)
T 1sny_A 156 NESQPMGVGRAAIINMSSI-LGSIQGNTDGGMYAYRTSKSALNAATKSLSVDLYPQRIMCVSLHPGWVKTDMGGSS---- 230 (267)
T ss_dssp TTTSCSSTTTCEEEEECCG-GGCSTTCCSCCCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCSBCSTTTCTT----
T ss_pred cccccccCCCceEEEEecc-cccccCCCCCCchHHHHHHHHHHHHHHHHHHHhhcCCcEEEEeCCcceecCCCCCC----
Confidence 11 5899999997 444443 36778999999999999999999999999999999999999986421
Q ss_pred hhhhhhhhcCCHHHHHHHhcccc
Q 010380 392 NKQMFNIICELPETVARTLVPRI 414 (512)
Q Consensus 392 ~~~~~~~~~~~pe~vA~~~l~r~ 414 (512)
...+|+++|+.++..+
T Consensus 231 -------~~~~~~~~a~~~~~~~ 246 (267)
T 1sny_A 231 -------APLDVPTSTGQIVQTI 246 (267)
T ss_dssp -------CSBCHHHHHHHHHHHH
T ss_pred -------CCCCHHHHHHHHHHHH
Confidence 1236777777766544
|
| >3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-33 Score=274.16 Aligned_cols=207 Identities=11% Similarity=0.087 Sum_probs=174.9
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
.+.-+|++|||||++|||+++|++|+++|++|++++|+.++.+ ...+.+|+
T Consensus 18 ~~~m~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~-----------------------------~~~~~~d~ 68 (251)
T 3orf_A 18 GSHMSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPNA-----------------------------DHSFTIKD 68 (251)
T ss_dssp ----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTTS-----------------------------SEEEECSC
T ss_pred ccccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCccccc-----------------------------ccceEEEe
Confidence 3445899999999999999999999999999999999876421 12478999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|+++++++++++.++++++|+||||||+.....++.+.+.++|++++++|+.|+++++++++|.|++ +|+||++||
T Consensus 69 ~d~~~v~~~~~~~~~~~g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~---~g~iv~isS 145 (251)
T 3orf_A 69 SGEEEIKSVIEKINSKSIKVDTFVCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQ---GGLFVLTGA 145 (251)
T ss_dssp SSHHHHHHHHHHHHTTTCCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEECC
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhcc---CCEEEEEec
Confidence 99999999999999999999999999998763334778889999999999999999999999999975 479999999
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhC--CCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHh
Q 010380 333 AGSGGSSTPLTAVYGSTKCGLRQLQASLFKESK--RSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTL 410 (512)
Q Consensus 333 ~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~--~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~ 410 (512)
. .+..+.++...|++||+|++.|+++++.|++ +.||+||+|+||+|+|++...... ...
T Consensus 146 ~-~~~~~~~~~~~Y~~sKaa~~~~~~~la~e~~~~~~gi~v~~v~PG~v~t~~~~~~~~------------------~~~ 206 (251)
T 3orf_A 146 S-AALNRTSGMIAYGATKAATHHIIKDLASENGGLPAGSTSLGILPVTLDTPTNRKYMS------------------DAN 206 (251)
T ss_dssp G-GGGSCCTTBHHHHHHHHHHHHHHHHHTSTTSSSCTTCEEEEEEESCBCCHHHHHHCT------------------TSC
T ss_pred h-hhccCCCCCchhHHHHHHHHHHHHHHHHHhcccCCCcEEEEEecCcCcCcchhhhcc------------------ccc
Confidence 8 6778889999999999999999999999987 899999999999999998532110 012
Q ss_pred ccccccchhhhhhhhhcCCh
Q 010380 411 VPRIRVVKGSGKAINYLTPP 430 (512)
Q Consensus 411 l~r~~~~~~va~~v~~L~s~ 430 (512)
..+...|+|+++.+.||+++
T Consensus 207 ~~~~~~~~dva~~i~~l~~~ 226 (251)
T 3orf_A 207 FDDWTPLSEVAEKLFEWSTN 226 (251)
T ss_dssp GGGSBCHHHHHHHHHHHHHC
T ss_pred ccccCCHHHHHHHHHHHhcC
Confidence 34556777888888888766
|
| >4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-32 Score=289.18 Aligned_cols=229 Identities=14% Similarity=0.120 Sum_probs=185.6
Q ss_pred CCCCEEEEECCCChHHHH--HHHHHHHCCCEEEEEEcChhhH------------HHHHHHHHHHHhhhhhhcCCCCcccc
Q 010380 175 AGPRNVVITGSTRGLGKA--LAREFLLSGDRVVVASRSSESV------------RMTVTELEENLKEGMMAAGGSSKKNL 240 (512)
Q Consensus 175 l~gk~vLVTGassGIG~a--iA~~La~~Ga~Vvl~~R~~~~l------------~~~~~el~~~~~~~~~~~g~~~~~~~ 240 (512)
..+|++|||||++|||++ +|+.|+++|++|++++|+.+.. +.+.+.+.+
T Consensus 58 ~~gK~aLVTGassGIG~A~aia~ala~~Ga~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 120 (418)
T 4eue_A 58 RGPKKVLIVGASSGFGLATRISVAFGGPEAHTIGVSYETGATDRRIGTAGWYNNIFFKEFAKK----------------- 120 (418)
T ss_dssp CCCSEEEEESCSSHHHHHHHHHHHHSSSCCEEEEEECCCCCCSSCCCCHHHHHHHHHHHHHHH-----------------
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHHhCCCEEEEEecCcchhhhcccccccchHHHHHHHHHH-----------------
Confidence 689999999999999999 9999999999999999975432 222222222
Q ss_pred cCceEEEEEccCCChhhHHHHHHHHHHHcCCCcccccccccCC------------CCCCC--------------------
Q 010380 241 VHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNK------------GFKPL-------------------- 288 (512)
Q Consensus 241 ~g~~v~~v~~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~------------~~~~~-------------------- 288 (512)
.+.++..+.||++|+++++++++++.+++|+||+||||||... ...++
T Consensus 121 ~g~~~~~~~~Dvtd~~~v~~~v~~i~~~~G~IDiLVnNAG~~~r~~~~~g~~~~s~~~p~~~~~~~~~~d~~~~~~~~~~ 200 (418)
T 4eue_A 121 KGLVAKNFIEDAFSNETKDKVIKYIKDEFGKIDLFVYSLAAPRRKDYKTGNVYTSRIKTILGDFEGPTIDVERDEITLKK 200 (418)
T ss_dssp TTCCEEEEESCTTCHHHHHHHHHHHHHTTCCEEEEEECCCCSEEECTTTCCEEECCCCBSSSCEEEEEEETTTTEEEEEE
T ss_pred cCCcEEEEEeeCCCHHHHHHHHHHHHHHcCCCCEEEECCccccccccccccccccccccccccccccccccccccccccc
Confidence 3567889999999999999999999999999999999999841 12333
Q ss_pred -cCCCHHHHHHHHHhhhhhHH-HHHHHHHHHHHhCCCCCeEEeecCCCCCCCCCCCc--chhhHHHHHHHHHHHHHHHHh
Q 010380 289 -LQFTNEEIEQIVSTNLVGSI-LCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLT--AVYGSTKCGLRQLQASLFKES 364 (512)
Q Consensus 289 -~~~s~e~~~~~~~vNv~g~~-~l~k~~lp~m~~~~~~g~IV~vSS~~a~~~~~p~~--~~Y~aSKaAl~~l~~sLa~El 364 (512)
.+.+.++|++++++|..+.+ .+++.+++.+... ++|+||++||. ++..+.|.+ ++|++||+|+++|+++|+.|+
T Consensus 201 ~~~~t~e~~~~~~~vn~~~~~~~~~~~l~~~~~~~-~gg~IV~iSSi-~~~~~~p~~~~~aY~ASKaAL~~ltrsLA~EL 278 (418)
T 4eue_A 201 VSSASIEEIEETRKVMGGEDWQEWCEELLYEDCFS-DKATTIAYSYI-GSPRTYKIYREGTIGIAKKDLEDKAKLINEKL 278 (418)
T ss_dssp ECBCCHHHHHHHHHHHSSHHHHHHHHHHHHTTCEE-EEEEEEEEECC-CCGGGTTTTTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhhc-CCcEEEEEeCc-hhcCCCCccccHHHHHHHHHHHHHHHHHHHHh
Confidence 46799999999999999988 7777777654433 46899999998 567777877 999999999999999999999
Q ss_pred CC-CCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhccccccchhhhhhhhhcCChHH
Q 010380 365 KR-SKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPRIRVVKGSGKAINYLTPPRI 432 (512)
Q Consensus 365 ~~-~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~r~~~~~~va~~v~~L~s~~~ 432 (512)
++ +||+||+|+||+|+|++........ .-......++++.+.+++++..+.||+++..
T Consensus 279 a~~~GIrVN~V~PG~v~T~~s~~ip~~p----------~y~~~~~~~mk~~G~~E~v~e~~~~L~sd~~ 337 (418)
T 4eue_A 279 NRVIGGRAFVSVNKALVTKASAYIPTFP----------LYAAILYKVMKEKNIHENCIMQIERMFSEKI 337 (418)
T ss_dssp HHHHSCEEEEEECCCCCCHHHHTSTTHH----------HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTT
T ss_pred CCccCeEEEEEECCcCcChhhhcCCCCc----------HHHHHHHHHHhhcCChHHHHHHHHHHhhccc
Confidence 99 9999999999999999864422100 0111233467888999999999999998854
|
| >1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-32 Score=265.20 Aligned_cols=226 Identities=23% Similarity=0.251 Sum_probs=181.1
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChh
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPA 256 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~ 256 (512)
+|++|||||++|||+++|++|+++|++|++++|+.+ . .++.++.+|++|++
T Consensus 2 ~k~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~-~----------------------------~~~~~~~~D~~~~~ 52 (242)
T 1uay_A 2 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRRE-G----------------------------EDLIYVEGDVTREE 52 (242)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC-S----------------------------SSSEEEECCTTCHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEccCcc-c----------------------------cceEEEeCCCCCHH
Confidence 689999999999999999999999999999999864 1 13467999999999
Q ss_pred hHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCH----HHHHHHHHhhhhhHHHHHHHHHHHHHhCC-----CCCeE
Q 010380 257 DVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTN----EEIEQIVSTNLVGSILCTREAMRVMRDQP-----KGGHI 327 (512)
Q Consensus 257 sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~----e~~~~~~~vNv~g~~~l~k~~lp~m~~~~-----~~g~I 327 (512)
+++++++++ ++++++|+||||||... ..++.+.+. +++++++++|+.++++++++++|.|.+++ ..++|
T Consensus 53 ~~~~~~~~~-~~~~~~d~li~~ag~~~-~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~i 130 (242)
T 1uay_A 53 DVRRAVARA-QEEAPLFAVVSAAGVGL-AEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVI 130 (242)
T ss_dssp HHHHHHHHH-HHHSCEEEEEECCCCCC-CCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEE
T ss_pred HHHHHHHHH-HhhCCceEEEEcccccC-cccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCCCeEE
Confidence 999999999 88899999999999876 455555544 49999999999999999999999998753 12499
Q ss_pred EeecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHH
Q 010380 328 FNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVA 407 (512)
Q Consensus 328 V~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA 407 (512)
|++||. .+..+.++...|++||++++.++++++.|++++||+|++|+||+|.|++.......... ....
T Consensus 131 v~~sS~-~~~~~~~~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~----------~~~~ 199 (242)
T 1uay_A 131 VNTASV-AAFEGQIGQAAYAASKGGVVALTLPAARELAGWGIRVVTVAPGLFDTPLLQGLPEKAKA----------SLAA 199 (242)
T ss_dssp EEECCT-HHHHCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSCSSHHHHTSCHHHHH----------HHHT
T ss_pred EEeCCh-hhccCCCCCchhhHHHHHHHHHHHHHHHHHhhcCcEEEEEEeccCcchhhhccchhHHH----------HHHh
Confidence 999987 56667788899999999999999999999999999999999999999986432211000 0111
Q ss_pred HHhc-cccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 408 RTLV-PRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 408 ~~~l-~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
..++ +++..|+|+++.+.+++++ ...++..+..+|++
T Consensus 200 ~~~~~~~~~~~~dva~~~~~l~~~--~~~~G~~~~v~gG~ 237 (242)
T 1uay_A 200 QVPFPPRLGRPEEYAALVLHILEN--PMLNGEVVRLDGAL 237 (242)
T ss_dssp TCCSSCSCCCHHHHHHHHHHHHHC--TTCCSCEEEESTTC
T ss_pred hCCCcccCCCHHHHHHHHHHHhcC--CCCCCcEEEEcCCe
Confidence 2234 6678899999999988865 22233344444443
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=9.3e-32 Score=265.11 Aligned_cols=187 Identities=22% Similarity=0.338 Sum_probs=162.0
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHH-CCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 175 AGPRNVVITGSTRGLGKALAREFLL-SGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 175 l~gk~vLVTGassGIG~aiA~~La~-~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
.++|++|||||++|||+++|++|++ +|++|++++|+.+++++..+++.+ .+.++.++.+|++
T Consensus 2 ~~~k~vlITGasggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~-----------------~~~~~~~~~~Dl~ 64 (276)
T 1wma_A 2 SGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQA-----------------EGLSPRFHQLDID 64 (276)
T ss_dssp CCCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHH-----------------TTCCCEEEECCTT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHh-----------------cCCeeEEEECCCC
Confidence 4689999999999999999999999 999999999999888877777755 2457888999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCC-HHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFT-NEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s-~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
|.++++++++++.+.++++|+||||||+.. ... .+.+ .+++++++++|+.|+++++++++|.|++ .|+||++||
T Consensus 65 ~~~~~~~~~~~~~~~~g~id~li~~Ag~~~-~~~-~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~---~g~iv~~sS 139 (276)
T 1wma_A 65 DLQSIRALRDFLRKEYGGLDVLVNNAGIAF-KVA-DPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKP---QGRVVNVSS 139 (276)
T ss_dssp CHHHHHHHHHHHHHHHSSEEEEEECCCCCC-CTT-CCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEE---EEEEEEECC
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEECCcccc-cCC-CccccHHHHHhhhheeeeeHHHHHHHHHHhhCC---CCEEEEECC
Confidence 999999999999999999999999999865 232 3344 5899999999999999999999999865 379999998
Q ss_pred CCCCCC------------------------------------------CCCCcchhhHHHHHHHHHHHHHHHHhCC----
Q 010380 333 AGSGGS------------------------------------------STPLTAVYGSTKCGLRQLQASLFKESKR---- 366 (512)
Q Consensus 333 ~~a~~~------------------------------------------~~p~~~~Y~aSKaAl~~l~~sLa~El~~---- 366 (512)
.. +.. +.| ...|++||++++.|++.++.|+.+
T Consensus 140 ~~-~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Y~~sK~a~~~~~~~la~~~~~~~~~ 217 (276)
T 1wma_A 140 IM-SVRALKSCSPELQQKFRSETITEEELVGLMNKFVEDTKKGVHQKEGWP-SSAYGVTKIGVTVLSRIHARKLSEQRKG 217 (276)
T ss_dssp HH-HHHHHHTSCHHHHHHHHCSSCCHHHHHHHHHHHHHHHHTTCTTTTTCC-SCHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred hh-hhcccccCChhHHhhccccccchhhhhhhhhhhhhhhcccccccCCCc-cchhHHHHHHHHHHHHHHHHHhhcccCC
Confidence 62 221 112 378999999999999999999987
Q ss_pred CCeEEEEEeCCcccCCccc
Q 010380 367 SKVGVHTASPGMVLTDLLL 385 (512)
Q Consensus 367 ~GIrVn~V~PG~V~T~~~~ 385 (512)
.||+|++|+||+|+|+|..
T Consensus 218 ~~i~v~~v~PG~v~t~~~~ 236 (276)
T 1wma_A 218 DKILLNACCPGWVRTDMAG 236 (276)
T ss_dssp SCCEEEEEECCSBCSTTTC
T ss_pred CceEEEEecCCccccCcCC
Confidence 7999999999999999864
|
| >1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-32 Score=268.40 Aligned_cols=217 Identities=16% Similarity=0.160 Sum_probs=163.8
Q ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhh
Q 010380 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPAD 257 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~s 257 (512)
|++|||||++|||+++|++|+++|++|++++|++++++ . . +.+|++|+++
T Consensus 2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~---------------------------~--~-~~~Dl~~~~~ 51 (257)
T 1fjh_A 2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEVI---------------------------A--D-LSTAEGRKQA 51 (257)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEE---------------------------C--C-TTSHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhhc---------------------------c--c-cccCCCCHHH
Confidence 68999999999999999999999999999999865421 0 1 6789999999
Q ss_pred HHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCCC
Q 010380 258 VQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGG 337 (512)
Q Consensus 258 v~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~~ 337 (512)
++++++++ .+++|+||||||+.... +.|++++++|+.|+++++++++|.|+++ +.|+||++||. ++.
T Consensus 52 v~~~~~~~---~~~id~lv~~Ag~~~~~--------~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~g~iv~isS~-~~~ 118 (257)
T 1fjh_A 52 IADVLAKC---SKGMDGLVLCAGLGPQT--------KVLGNVVSVNYFGATELMDAFLPALKKG-HQPAAVVISSV-ASA 118 (257)
T ss_dssp HHHHHTTC---TTCCSEEEECCCCCTTC--------SSHHHHHHHHTHHHHHHHHHHHHHHHTS-SSCEEEEECCG-GGG
T ss_pred HHHHHHHh---CCCCCEEEECCCCCCCc--------ccHHHHHHHhhHHHHHHHHHHHHHHhhc-CCcEEEEECCh-hhh
Confidence 98887633 38999999999985411 2389999999999999999999999876 56899999997 343
Q ss_pred ----------------------------CCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcc
Q 010380 338 ----------------------------SSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGST 389 (512)
Q Consensus 338 ----------------------------~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~ 389 (512)
.+.++...|++||+|++.|+++++.|++++||+||+|+||+|+|++......
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~ 198 (257)
T 1fjh_A 119 HLAFDKNPLALALEAGEEAKARAIVEHAGEQGGNLAYAGSKNALTVAVRKRAAAWGEAGVRLNTIAPGATETPLLQAGLQ 198 (257)
T ss_dssp SSCGGGCTTHHHHHHTCHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECC-----------
T ss_pred ccccccchhhhhhcccchhhhhhhhhcccCCCCccHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCCCCccchhhcc
Confidence 3444678999999999999999999999999999999999999998643211
Q ss_pred hhhhhhhhhhcCCHHHHH--HHhccccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 390 IQNKQMFNIICELPETVA--RTLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 390 ~~~~~~~~~~~~~pe~vA--~~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
.. . ..+... ..++++...|+++++++.||+++...+.++..+..+|++
T Consensus 199 ~~---~------~~~~~~~~~~~~~~~~~~~dvA~~~~~l~~~~~~~~tG~~~~vdgG~ 248 (257)
T 1fjh_A 199 DP---R------YGESIAKFVPPMGRRAEPSEMASVIAFLMSPAASYVHGAQIVIDGGI 248 (257)
T ss_dssp -------------------CCCSTTSCCCTHHHHHHHHHHTSGGGTTCCSCEEEESTTH
T ss_pred ch---h------HHHHHHhcccccCCCCCHHHHHHHHHHHhCchhcCCcCCEEEECCCc
Confidence 00 0 011111 234567889999999999999987655555555555554
|
| >2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.2e-30 Score=304.18 Aligned_cols=245 Identities=21% Similarity=0.245 Sum_probs=198.5
Q ss_pred ccCCCCCCEEEEECCCCh-HHHHHHHHHHHCCCEEEEE-EcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEE
Q 010380 171 EHCKAGPRNVVITGSTRG-LGKALAREFLLSGDRVVVA-SRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGI 248 (512)
Q Consensus 171 ~~~~l~gk~vLVTGassG-IG~aiA~~La~~Ga~Vvl~-~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v 248 (512)
..++++||++|||||++| ||+++|++|+++|++|+++ +|+.++++++.+++.+.+.. .+.++.++
T Consensus 669 ~~m~l~gKvaLVTGASsGgIG~aIA~~La~~GA~Vvl~~~R~~~~l~~~~~eL~~~~~~-------------~g~~v~~v 735 (1887)
T 2uv8_A 669 NGVTFKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTDYYQSIYAKYGA-------------KGSTLIVV 735 (1887)
T ss_dssp TCBCCTTCEEEEESCCSSSHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHHHHHHCC-------------TTCEEEEE
T ss_pred ccCCCCCCEEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHHHHHHhhc-------------CCCeEEEE
Confidence 345689999999999998 9999999999999999998 68888887777777554321 25689999
Q ss_pred EccCCChhhHHHHHHHHHHH-----cC-CCcccccccccCCCCC-CCcCCC--HHHHHHHHHhhhhhHHHHHHHH--HHH
Q 010380 249 ACDVCEPADVQKLSNFAVNE-----FG-SIDIWINNAGTNKGFK-PLLQFT--NEEIEQIVSTNLVGSILCTREA--MRV 317 (512)
Q Consensus 249 ~~Dltd~~sv~~~~~~i~~~-----~g-~IDvLInnAG~~~~~~-~~~~~s--~e~~~~~~~vNv~g~~~l~k~~--lp~ 317 (512)
.||++|+++++++++++.++ +| +||+||||||+.. .. ++.+.+ .++|+++|++|+.+++++++.+ +|.
T Consensus 736 ~~DVsd~~sV~alv~~i~~~~~~~G~G~~LDiLVNNAGi~~-~~~~l~d~t~~~e~~~~v~~vNv~g~~~l~~a~~~lp~ 814 (1887)
T 2uv8_A 736 PFNQGSKQDVEALIEFIYDTEKNGGLGWDLDAIIPFAAIPE-QGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARG 814 (1887)
T ss_dssp ECCTTCHHHHHHHHHHHHSCTTTTSCCCCCSEEEECCCCCC-CSBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTT
T ss_pred EecCCCHHHHHHHHHHHHHhccccccCCCCeEEEECCCcCC-CCCChhhCCcchHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999988 66 9999999999976 45 788888 8999999999999999999988 788
Q ss_pred HHhCCCCCeEEeecCCCCCCCCCCCcchhhHHHHHHHHH-HHHHHHHhCCCCeEEEEEeCCccc-CCcccCCcchhhhhh
Q 010380 318 MRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQL-QASLFKESKRSKVGVHTASPGMVL-TDLLLSGSTIQNKQM 395 (512)
Q Consensus 318 m~~~~~~g~IV~vSS~~a~~~~~p~~~~Y~aSKaAl~~l-~~sLa~El~~~GIrVn~V~PG~V~-T~~~~~~~~~~~~~~ 395 (512)
|.++ ++|+||++||. ++..+ +...|++||+|+++| ++.++.|+++. |+||+|+||+|+ |+|..... .
T Consensus 815 m~~~-~~G~IVnISS~-ag~~g--g~~aYaASKAAL~~Lttr~lA~ela~~-IrVNaV~PG~V~tT~m~~~~~-~----- 883 (1887)
T 2uv8_A 815 IETR-PAQVILPMSPN-HGTFG--GDGMYSESKLSLETLFNRWHSESWANQ-LTVCGAIIGWTRGTGLMSANN-I----- 883 (1887)
T ss_dssp CCSC-CEEEEEEECSC-TTCSS--CBTTHHHHHHHGGGHHHHHHHSSCTTT-EEEEEEEECCEECC-----CC-T-----
T ss_pred hhhC-CCCEEEEEcCh-HhccC--CCchHHHHHHHHHHHHHHHHHHHhCCC-eEEEEEEecccccccccccch-h-----
Confidence 8765 46899999997 45444 678999999999999 99999999988 999999999999 89864310 0
Q ss_pred hhhhcCCHHHHHHHhccccccchhhhhhhhhcCChH-HHHHHHHHHhcc--Cccc
Q 010380 396 FNIICELPETVARTLVPRIRVVKGSGKAINYLTPPR-ILLALVTAWLRR--GRWF 447 (512)
Q Consensus 396 ~~~~~~~pe~vA~~~l~r~~~~~~va~~v~~L~s~~-~~~~~~~~~~~~--g~~~ 447 (512)
..+...+.++ +...|++++..+.||+++. ..+.++..+..+ |++.
T Consensus 884 ------~~~~~~~~pl-r~~sPEEVA~avlfLaSd~~as~iTGq~I~VDVDGG~~ 931 (1887)
T 2uv8_A 884 ------IAEGIEKMGV-RTFSQKEMAFNLLGLLTPEVVELCQKSPVMADLNGGLQ 931 (1887)
T ss_dssp ------THHHHHTTSC-CCEEHHHHHHHHHGGGSHHHHHHHHHSCEEEEESCSTT
T ss_pred ------HHHHHHhcCC-CCCCHHHHHHHHHHHhCCCccccccCcEEEEECCCCee
Confidence 1111222233 5568999999999999998 667777777653 6653
|
| >3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-29 Score=275.60 Aligned_cols=216 Identities=13% Similarity=0.136 Sum_probs=175.3
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCE-EEEE-EcCh-------------hhHHHHHHHHHHHHhhhhhhcCCCCcccc
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDR-VVVA-SRSS-------------ESVRMTVTELEENLKEGMMAAGGSSKKNL 240 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~-Vvl~-~R~~-------------~~l~~~~~el~~~~~~~~~~~g~~~~~~~ 240 (512)
.++++|||||++|||+++|++|+++|++ |+++ +|+. +.++++.+++.+
T Consensus 250 ~~~~vLITGgsgGIG~~lA~~La~~G~~~vvl~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~----------------- 312 (525)
T 3qp9_A 250 ADGTVLVTGAEEPAAAEAARRLARDGAGHLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAELAD----------------- 312 (525)
T ss_dssp TTSEEEESSTTSHHHHHHHHHHHHHTCCEEEEEECCCC---------------CHHHHHHHHH-----------------
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCCCEEEEEeCCCCCCccccccccccCHHHHHHHHHHHh-----------------
Confidence 5799999999999999999999999996 7787 8983 445566666654
Q ss_pred cCceEEEEEccCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHh
Q 010380 241 VHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRD 320 (512)
Q Consensus 241 ~g~~v~~v~~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~ 320 (512)
.+.++.++.||++|+++++++++++. ++++||+||||||+.. ..++.+.+.+++++++++|+.|++++++++.+.|++
T Consensus 313 ~g~~v~~~~~Dvtd~~~v~~~~~~i~-~~g~id~vVh~AGv~~-~~~~~~~~~~~~~~v~~~nv~g~~~L~~~~~~~~~~ 390 (525)
T 3qp9_A 313 LGATATVVTCDLTDAEAAARLLAGVS-DAHPLSAVLHLPPTVD-SEPLAATDADALARVVTAKATAALHLDRLLREAAAA 390 (525)
T ss_dssp HTCEEEEEECCTTSHHHHHHHHHTSC-TTSCEEEEEECCCCCC-CCCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred cCCEEEEEECCCCCHHHHHHHHHHHH-hcCCCcEEEECCcCCC-CCchhhCCHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 46789999999999999999999988 7899999999999987 688999999999999999999999999999999987
Q ss_pred CCCCCeEEeecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhc
Q 010380 321 QPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIIC 400 (512)
Q Consensus 321 ~~~~g~IV~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~ 400 (512)
++..++||++||. ++..+.++++.|+++|+++++| +.++...||+|++|+||+++|+|.................
T Consensus 391 ~~~~~~iV~~SS~-a~~~g~~g~~~YaaaKa~l~~l----A~~~~~~gi~v~sI~pG~~~tgm~~~~~~~~~~~~~g~~~ 465 (525)
T 3qp9_A 391 GGRPPVLVLFSSV-AAIWGGAGQGAYAAGTAFLDAL----AGQHRADGPTVTSVAWSPWEGSRVTEGATGERLRRLGLRP 465 (525)
T ss_dssp --CCCEEEEEEEG-GGTTCCTTCHHHHHHHHHHHHH----HTSCCSSCCEEEEEEECCBTTSGGGSSHHHHHHHHTTBCC
T ss_pred CCCCCEEEEECCH-HHcCCCCCCHHHHHHHHHHHHH----HHHHHhCCCCEEEEECCccccccccchhhHHHHHhcCCCC
Confidence 6336899999998 7888899999999999999887 4577788999999999999999974322111111112223
Q ss_pred CCHHHHHHHhccccc
Q 010380 401 ELPETVARTLVPRIR 415 (512)
Q Consensus 401 ~~pe~vA~~~l~r~~ 415 (512)
.+|+++++.+...+.
T Consensus 466 l~pee~a~~l~~~l~ 480 (525)
T 3qp9_A 466 LAPATALTALDTALG 480 (525)
T ss_dssp BCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 467777776665443
|
| >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.6e-30 Score=297.24 Aligned_cols=245 Identities=20% Similarity=0.226 Sum_probs=196.4
Q ss_pred ccCCCCCCEEEEECCCCh-HHHHHHHHHHHCCCEEEEE-EcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEE
Q 010380 171 EHCKAGPRNVVITGSTRG-LGKALAREFLLSGDRVVVA-SRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGI 248 (512)
Q Consensus 171 ~~~~l~gk~vLVTGassG-IG~aiA~~La~~Ga~Vvl~-~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v 248 (512)
..+++++|++|||||++| ||+++|++|+++|++|+++ +|+.+++++..+++.+.+. ..+.++.++
T Consensus 470 ~~msL~GKvALVTGASgGGIGrAIAr~LA~~GA~VVL~~~R~~e~lee~a~eL~ael~-------------a~Ga~V~vV 536 (1688)
T 2pff_A 470 XXVTFKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTDYYQSIYAKYG-------------AKGSTLIVV 536 (1688)
T ss_dssp SCCCCCSCCEEECSCSSSSTHHHHHHHHHHHTCEEEEEESSCSTTTTTHHHHTTTTTC-------------CTTCEEEEE
T ss_pred cccccCCCEEEEECCChHHHHHHHHHHHHHCcCEEEEEeCCCHHHHHHHHHHHHHHhh-------------cCCCeEEEE
Confidence 346789999999999998 9999999999999999998 6777776666665533211 025689999
Q ss_pred EccCCChhhHHHHHHHHHHH-----cC-CCcccccccccCCCCC-CCcCCC--HHHHHHHHHhhhhhHHHHHHHH--HHH
Q 010380 249 ACDVCEPADVQKLSNFAVNE-----FG-SIDIWINNAGTNKGFK-PLLQFT--NEEIEQIVSTNLVGSILCTREA--MRV 317 (512)
Q Consensus 249 ~~Dltd~~sv~~~~~~i~~~-----~g-~IDvLInnAG~~~~~~-~~~~~s--~e~~~~~~~vNv~g~~~l~k~~--lp~ 317 (512)
.||++|+++++++++++.++ +| +||+||||||+.. .. ++.+.+ .++|++++++|+.+++.+++.+ +|.
T Consensus 537 ~~DVTD~esVeaLVe~I~e~~~~~GfG~~IDILVNNAGI~~-~g~~l~dlt~s~Ed~~rv~~VNL~G~~~Ltqaa~~lp~ 615 (1688)
T 2pff_A 537 PFNQGSKQDVEALIEFIYDTEKNGGLGWDLDAIIPFAAIPE-QGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARG 615 (1688)
T ss_dssp ECCSSSTTHHHHHHHHHHSCTTSSSCCCCCCEEECCCCCCC-CSBCSSSCTTHHHHHHHHTTHHHHHHHHHHHHHHHHHT
T ss_pred EeCCCCHHHHHHHHHHHHHhccccccCCCCeEEEECCCcCC-CCCChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHhChH
Confidence 99999999999999999988 77 9999999999876 45 788888 9999999999999999999998 788
Q ss_pred HHhCCCCCeEEeecCCCCCCCCCCCcchhhHHHHHHHHH-HHHHHHHhCCCCeEEEEEeCCccc-CCcccCCcchhhhhh
Q 010380 318 MRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQL-QASLFKESKRSKVGVHTASPGMVL-TDLLLSGSTIQNKQM 395 (512)
Q Consensus 318 m~~~~~~g~IV~vSS~~a~~~~~p~~~~Y~aSKaAl~~l-~~sLa~El~~~GIrVn~V~PG~V~-T~~~~~~~~~~~~~~ 395 (512)
|+++ ++|+||++||. ++..+ +...|++||+|+++| ++.++.|+++. |+||+|+||+|+ |+|..... ..
T Consensus 616 M~kr-ggGrIVnISSi-AG~~G--g~saYaASKAAL~aLttrsLAeEla~~-IRVNaVaPG~V~TT~M~~~~e-~~---- 685 (1688)
T 2pff_A 616 IETR-PAQVILPMSPN-HGTFG--GDGMYSESKLSLETLFNRWHSESWANQ-LTVCGAIIGWTRGTGLMSANN-II---- 685 (1688)
T ss_dssp CTTS-CEEECCCCCSC-TTTSS--CBTTHHHHHHHHTHHHHHTTTSSCTTT-EECCCCCCCCCCCCSSSCTTT-TC----
T ss_pred HHhC-CCCEEEEEECh-HhccC--CchHHHHHHHHHHHHHHHHHHHHcCCC-eEEEEEEECcCcCCcccCCch-HH----
Confidence 8765 46899999997 45444 678999999999999 88889999887 999999999999 78864310 00
Q ss_pred hhhhcCCHHHHHHHhccccccchhhhhhhhhcCChH-HHHHHHHHHhcc--Cccc
Q 010380 396 FNIICELPETVARTLVPRIRVVKGSGKAINYLTPPR-ILLALVTAWLRR--GRWF 447 (512)
Q Consensus 396 ~~~~~~~pe~vA~~~l~r~~~~~~va~~v~~L~s~~-~~~~~~~~~~~~--g~~~ 447 (512)
... ..+.++ +...|++++.++.||+++. ..+.++..+..+ |++.
T Consensus 686 ~~~-------l~~ipl-R~~sPEEVA~aIlFLaSd~sAs~ITGq~I~VDVDGG~~ 732 (1688)
T 2pff_A 686 AEG-------IEKMGV-RTFSQKEMAFNLLGLLTPEVVELCQKSPVMADLNGGLQ 732 (1688)
T ss_dssp STT-------TSSSSC-CCCCCCTTHHHHHHHTSTTHHHHHTTSCCCCCCSCSGG
T ss_pred HHH-------HHhCCC-CCCCHHHHHHHHHHHhCCCccccccCcEEEEEcCCCee
Confidence 000 011122 4558999999999999988 567777666543 6653
|
| >2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.1e-29 Score=297.63 Aligned_cols=244 Identities=18% Similarity=0.207 Sum_probs=196.7
Q ss_pred cCCCCCCEEEEECCCCh-HHHHHHHHHHHCCCEEEEEE-cChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEE
Q 010380 172 HCKAGPRNVVITGSTRG-LGKALAREFLLSGDRVVVAS-RSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIA 249 (512)
Q Consensus 172 ~~~l~gk~vLVTGassG-IG~aiA~~La~~Ga~Vvl~~-R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~ 249 (512)
.+++++|++|||||++| ||+++|++|+++|++|++++ |+.+++++..+++.+.+.. .+.++.++.
T Consensus 647 ~m~L~gKvaLVTGASgGgIG~aIAr~LA~~GA~VVl~~~R~~~~l~~~a~eL~~el~~-------------~G~~v~~v~ 713 (1878)
T 2uv9_A 647 GLTFQGKHALMTGAGAGSIGAEVLQGLLSGGAKVIVTTSRFSRQVTEYYQGIYARCGA-------------RGSQLVVVP 713 (1878)
T ss_dssp CBCCTTCEEEEESCCTTSHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHHHHHHCC-------------TTCEEEEEE
T ss_pred CCCCCCCEEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCChHHHHHHHHHHHHHhhc-------------cCCeEEEEE
Confidence 45689999999999999 99999999999999999995 6677777777776553321 256899999
Q ss_pred ccCCChhhHHHHHHHHHHH---cC-CCcccccccccCCCCC-CCcCCC--HHHHHHHHHhhhhhHHHHHHH--HHHHHHh
Q 010380 250 CDVCEPADVQKLSNFAVNE---FG-SIDIWINNAGTNKGFK-PLLQFT--NEEIEQIVSTNLVGSILCTRE--AMRVMRD 320 (512)
Q Consensus 250 ~Dltd~~sv~~~~~~i~~~---~g-~IDvLInnAG~~~~~~-~~~~~s--~e~~~~~~~vNv~g~~~l~k~--~lp~m~~ 320 (512)
||++|.++++++++++.++ +| +||+||||||+.. .. ++.+.+ .++|+++|++|+.|++++++. ++|.|.+
T Consensus 714 ~DVsd~esV~alv~~i~~~~~~~G~~IDiLVnNAGi~~-~~~~l~d~t~~~e~~~~vl~vNv~g~~~l~~a~~~lp~M~~ 792 (1878)
T 2uv9_A 714 FNQGSKQDVEALVNYIYDTKNGLGWDLDYVVPFAAIPE-NGREIDSIDSKSELAHRIMLTNLLRLLGAIKTQKKERGYET 792 (1878)
T ss_dssp CCTTCHHHHHHHHHHHHCSSSSCCCCCSEEEECCCCCC-TTCCTTCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCS
T ss_pred cCCCCHHHHHHHHHHHHHhhcccCCCCcEEEeCccccc-CCCChhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Confidence 9999999999999999988 89 9999999999976 45 788998 899999999999999999987 7788876
Q ss_pred CCCCCeEEeecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHH-HhCCCCeEEEEEeCCccc-CCcccCCcchhhhhhhhh
Q 010380 321 QPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFK-ESKRSKVGVHTASPGMVL-TDLLLSGSTIQNKQMFNI 398 (512)
Q Consensus 321 ~~~~g~IV~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~-El~~~GIrVn~V~PG~V~-T~~~~~~~~~~~~~~~~~ 398 (512)
+ +.|+||++||. ++..+ +...|++||+|+++|++.++. |+++. |+||+|+||+|+ |+|.... . .
T Consensus 793 ~-~~G~IVnISS~-ag~~g--g~~aYaASKAAL~aLt~~laAeEla~~-IrVNaVaPG~V~gT~m~~~~-----~-~--- 858 (1878)
T 2uv9_A 793 R-PAQVILPLSPN-HGTFG--NDGLYSESKLALETLFNRWYSESWGNY-LTICGAVIGWTRGTGLMSAN-----N-L--- 858 (1878)
T ss_dssp C-CEEECCEECSC-SSSSS--CCSSHHHHHHHHTTHHHHHHHSTTTTT-EEEEEEEECCBCCTTSCSHH-----H-H---
T ss_pred C-CCCEEEEEcch-hhccC--CchHHHHHHHHHHHHHHHHHHHHcCCC-eEEEEEEecceecCcccccc-----h-h---
Confidence 5 46899999997 45444 578999999999999887655 47766 999999999999 9986320 0 0
Q ss_pred hcCCHHHHHHHhccccccchhhhhhhhhcCChHH-HHHHHHHHhc--cCccc
Q 010380 399 ICELPETVARTLVPRIRVVKGSGKAINYLTPPRI-LLALVTAWLR--RGRWF 447 (512)
Q Consensus 399 ~~~~pe~vA~~~l~r~~~~~~va~~v~~L~s~~~-~~~~~~~~~~--~g~~~ 447 (512)
..+...+..+ +...|++++..+.||+++.. .+.++..+.. ||++.
T Consensus 859 ---~~~~~~~~pl-r~~sPeEVA~avlfLaSd~a~s~iTGq~I~VDVDGG~~ 906 (1878)
T 2uv9_A 859 ---VAEGVEKLGV-RTFSQQEMAFNLLGLMAPAIVNLCQSDPVFADLNGGLQ 906 (1878)
T ss_dssp ---THHHHHTTTC-CCBCHHHHHHHHHHHHSHHHHHHHTTSCEEEEESCSGG
T ss_pred ---hHHHHHhcCC-CCCCHHHHHHHHHHHhCCcccccccCcEEEEEcCCCcc
Confidence 1112222233 44589999999999999986 6777776654 36653
|
| >2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-28 Score=233.85 Aligned_cols=172 Identities=22% Similarity=0.289 Sum_probs=148.7
Q ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhh
Q 010380 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPAD 257 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~s 257 (512)
|+++||||++|||++++++|+++ +|++++|+++++++..+++ .. .++.+|++|+++
T Consensus 1 k~vlVtGasg~iG~~la~~l~~~--~V~~~~r~~~~~~~~~~~~--------------------~~--~~~~~D~~~~~~ 56 (207)
T 2yut_A 1 MRVLITGATGGLGGAFARALKGH--DLLLSGRRAGALAELAREV--------------------GA--RALPADLADELE 56 (207)
T ss_dssp CEEEEETTTSHHHHHHHHHTTTS--EEEEECSCHHHHHHHHHHH--------------------TC--EECCCCTTSHHH
T ss_pred CEEEEEcCCcHHHHHHHHHHHhC--CEEEEECCHHHHHHHHHhc--------------------cC--cEEEeeCCCHHH
Confidence 57999999999999999999998 9999999987766554433 11 678999999999
Q ss_pred HHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCCC
Q 010380 258 VQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGG 337 (512)
Q Consensus 258 v~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~~ 337 (512)
+++++++ ++++|+||||||... ..++.+.+.+++++.+++|+.+++++++++ +++ +.++||++||. .+.
T Consensus 57 ~~~~~~~----~~~id~vi~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~----~~~-~~~~iv~~sS~-~~~ 125 (207)
T 2yut_A 57 AKALLEE----AGPLDLLVHAVGKAG-RASVREAGRDLVEEMLAAHLLTAAFVLKHA----RFQ-KGARAVFFGAY-PRY 125 (207)
T ss_dssp HHHHHHH----HCSEEEEEECCCCCC-CBCSCC---CHHHHHHHHHHHHHHHHHHHC----CEE-EEEEEEEECCC-HHH
T ss_pred HHHHHHh----cCCCCEEEECCCcCC-CCChhhCCHHHHHHHHHHHhHHHHHHHHHH----Hhc-CCcEEEEEcCh-hhc
Confidence 9998876 689999999999876 577888899999999999999999999988 222 46899999987 566
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcc
Q 010380 338 SSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLL 384 (512)
Q Consensus 338 ~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~ 384 (512)
.+.++...|++||++++.+++.++.|++++||++++|+||++.|++.
T Consensus 126 ~~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~pg~v~t~~~ 172 (207)
T 2yut_A 126 VQVPGFAAYAAAKGALEAYLEAARKELLREGVHLVLVRLPAVATGLW 172 (207)
T ss_dssp HSSTTBHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEECCCCBCSGGG
T ss_pred cCCCCcchHHHHHHHHHHHHHHHHHHHhhhCCEEEEEecCcccCCCc
Confidence 67788899999999999999999999999999999999999999984
|
| >3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.3e-28 Score=227.44 Aligned_cols=161 Identities=19% Similarity=0.283 Sum_probs=146.6
Q ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhhH
Q 010380 179 NVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPADV 258 (512)
Q Consensus 179 ~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~sv 258 (512)
+++||||++|||++++++|+ +|++|++++|+.+ .+.+|++|++++
T Consensus 5 ~vlVtGasg~iG~~~~~~l~-~g~~V~~~~r~~~----------------------------------~~~~D~~~~~~~ 49 (202)
T 3d7l_A 5 KILLIGASGTLGSAVKERLE-KKAEVITAGRHSG----------------------------------DVTVDITNIDSI 49 (202)
T ss_dssp EEEEETTTSHHHHHHHHHHT-TTSEEEEEESSSS----------------------------------SEECCTTCHHHH
T ss_pred EEEEEcCCcHHHHHHHHHHH-CCCeEEEEecCcc----------------------------------ceeeecCCHHHH
Confidence 79999999999999999999 9999999999753 268999999999
Q ss_pred HHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCC
Q 010380 259 QKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGS 338 (512)
Q Consensus 259 ~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~~~ 338 (512)
+++++.+ +++|+||||||... ..++.+.+.++|++.+++|+.+++++++++.|.|.+ +++||++||. .+..
T Consensus 50 ~~~~~~~----~~~d~vi~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~---~~~iv~~sS~-~~~~ 120 (202)
T 3d7l_A 50 KKMYEQV----GKVDAIVSATGSAT-FSPLTELTPEKNAVTISSKLGGQINLVLLGIDSLND---KGSFTLTTGI-MMED 120 (202)
T ss_dssp HHHHHHH----CCEEEEEECCCCCC-CCCGGGCCHHHHHHHHHTTTHHHHHHHHTTGGGEEE---EEEEEEECCG-GGTS
T ss_pred HHHHHHh----CCCCEEEECCCCCC-CCChhhCCHHHHHHHHhhccHHHHHHHHHHHHHhcc---CCEEEEEcch-hhcC
Confidence 9988764 78999999999876 577888999999999999999999999999999864 3899999987 5677
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcc
Q 010380 339 STPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLL 384 (512)
Q Consensus 339 ~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~ 384 (512)
+.++...|++||++++.+++.++.|+ +.||++++|+||++.|++.
T Consensus 121 ~~~~~~~Y~~sK~~~~~~~~~~~~e~-~~gi~v~~v~pg~v~~~~~ 165 (202)
T 3d7l_A 121 PIVQGASAAMANGAVTAFAKSAAIEM-PRGIRINTVSPNVLEESWD 165 (202)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHTTSC-STTCEEEEEEECCBGGGHH
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHc-cCCeEEEEEecCccCCchh
Confidence 78888999999999999999999999 7899999999999999974
|
| >3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-26 Score=288.35 Aligned_cols=244 Identities=16% Similarity=0.155 Sum_probs=177.1
Q ss_pred CCCCCCEEEEECCCCh-HHHHHHHHHHHCCCEEEEEEcChhh-HHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEc
Q 010380 173 CKAGPRNVVITGSTRG-LGKALAREFLLSGDRVVVASRSSES-VRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIAC 250 (512)
Q Consensus 173 ~~l~gk~vLVTGassG-IG~aiA~~La~~Ga~Vvl~~R~~~~-l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~ 250 (512)
..++||++|||||++| ||+++|+.|+++|++|++++|+.+. ..+..+++.+.... .+.++..+.|
T Consensus 2132 ~~l~gKvaLVTGAs~GsIG~AiA~~La~~GA~Vvi~~r~~~~~~~~~~~~l~~~l~~-------------~G~~~~~v~~ 2198 (3089)
T 3zen_D 2132 XXXXDEVAVVTGASKGSIAASVVGQLLDGGATVIATTSRLDDDRLAFYKQLYRDHAR-------------FDATLWVVPA 2198 (3089)
T ss_dssp CCCCCCEEEEESCCTTSHHHHHHHHHHHTTCEEEEEESCCSHHHHHHHHHHHHHHCC-------------TTCEEEEEEC
T ss_pred ccCCCCEEEEeCCChhHHHHHHHHHHHHCCCEEEEEeCChhhhhhHHHHHHHHHHhh-------------cCCeEEEEEe
Confidence 3489999999999999 9999999999999999999998765 22223333332211 3568899999
Q ss_pred cCCChhhHHHHHHHHHH----HcCCCccccccccc----CCCCCCCcCCCHHHH----HHHHHhhhhhHHHHHHHHHHHH
Q 010380 251 DVCEPADVQKLSNFAVN----EFGSIDIWINNAGT----NKGFKPLLQFTNEEI----EQIVSTNLVGSILCTREAMRVM 318 (512)
Q Consensus 251 Dltd~~sv~~~~~~i~~----~~g~IDvLInnAG~----~~~~~~~~~~s~e~~----~~~~~vNv~g~~~l~k~~lp~m 318 (512)
|++|+++++++++++.+ .+|+||+||||||+ ........+.+.++| +..+++|+.+++.+++.+.|.|
T Consensus 2199 Dvtd~~~v~~lv~~i~~~~~~~fG~IDILVNNAGi~d~~~~~a~~~~~~~~e~~~~~~e~~~~vnl~~~~~l~~~~~~~m 2278 (3089)
T 3zen_D 2199 NMASYSDIDKLVEWVGTEQTESLGPQSIHLKDAQTPTLLFPFAAPRVAGDMSEVGSRAEMEMKVLLWAVQRLISGLSKIG 2278 (3089)
T ss_dssp CTTCHHHHHHHHHHHTSCCEEEESSSEEEECCCCCCSEEEECCCCCCCCTTSCTTSHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHhhhhhhcCCCCEEEECCCcccccCcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998 89999999999998 221122333344444 4459999999999999999999
Q ss_pred HhCCCCC--e-EEeecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHH--hCCCCeEEEEEeCCccc-CCcccCCcchhh
Q 010380 319 RDQPKGG--H-IFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKE--SKRSKVGVHTASPGMVL-TDLLLSGSTIQN 392 (512)
Q Consensus 319 ~~~~~~g--~-IV~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~E--l~~~GIrVn~V~PG~V~-T~~~~~~~~~~~ 392 (512)
.++..++ . |+++++. .+ ..++..+|++||+|+++|+++|+.| +++ +|+||+|+||+|+ |++......
T Consensus 2279 ~~~~~g~~~~ii~~~ss~-~g--~~g~~~aYsASKaAl~~LtrslA~E~~~a~-~IrVn~v~PG~v~tT~l~~~~~~--- 2351 (3089)
T 3zen_D 2279 AERDIASRLHVVLPGSPN-RG--MFGGDGAYGEAKSALDALENRWSAEKSWAE-RVSLAHALIGWTKGTGLMGQNDA--- 2351 (3089)
T ss_dssp HHTTCCCCEEEEEEECSS-TT--SCSSCSSHHHHGGGHHHHHHHHHHCSTTTT-TEEEEEEECCCEECSTTTTTTTT---
T ss_pred HHcCCCceeEEEEECCcc-cc--cCCCchHHHHHHHHHHHHHHHHHhccccCC-CeEEEEEeecccCCCcccccchh---
Confidence 8763222 2 2333322 22 2345678999999999999999999 664 6999999999999 776532110
Q ss_pred hhhhhhhcCCHHHHHHHhccccccchhhhhhhhhcCChHHHHHHHH-HHhcc--Ccc
Q 010380 393 KQMFNIICELPETVARTLVPRIRVVKGSGKAINYLTPPRILLALVT-AWLRR--GRW 446 (512)
Q Consensus 393 ~~~~~~~~~~pe~vA~~~l~r~~~~~~va~~v~~L~s~~~~~~~~~-~~~~~--g~~ 446 (512)
..+......+ +...|+|++.++.||+++.....+.. .+..| |++
T Consensus 2352 ---------~~~~~~~~~~-r~~~PeEIA~avlfLaS~~a~~~~~~~p~~vdl~GG~ 2398 (3089)
T 3zen_D 2352 ---------IVSAVEEAGV-TTYTTDEMAAMLLDLCTVETKVAAAGAPVKVDLTGGL 2398 (3089)
T ss_dssp ---------THHHHGGGSC-BCEEHHHHHHHHHHTTSHHHHHHHHHSCEEEECSBSC
T ss_pred ---------HHHHHHhcCC-CCCCHHHHHHHHHHHhChhhhhHhcCCeEEEEcCCCc
Confidence 1122222233 33489999999999999987654333 23333 555
|
| >3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-26 Score=249.47 Aligned_cols=210 Identities=15% Similarity=0.193 Sum_probs=166.5
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcCh---hhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSGD-RVVVASRSS---ESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~---~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
++++|||||++|||+++|++|+++|+ +|++++|+. +..+++.+++.+ .+.++.++.||+
T Consensus 239 ~~~vLITGgsgGIG~alA~~La~~Ga~~vvl~~R~~~~~~~~~~l~~~l~~-----------------~g~~v~~~~~Dv 301 (496)
T 3mje_A 239 HGSVLVTGGTGGIGGRVARRLAEQGAAHLVLTSRRGADAPGAAELRAELEQ-----------------LGVRVTIAACDA 301 (496)
T ss_dssp CSEEEEETCSSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHH-----------------TTCEEEEEECCT
T ss_pred CCEEEEECCCCchHHHHHHHHHHCCCcEEEEEeCCCCChHHHHHHHHHHHh-----------------cCCeEEEEEccC
Confidence 48999999999999999999999998 899999974 345566666655 467899999999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|+++++++++++.+. ++||+||||||+.....++.+.+.++|++++++|+.|++++.+.+.+. ..++||++||
T Consensus 302 td~~~v~~~~~~i~~~-g~ld~vVh~AGv~~~~~~l~~~t~e~~~~vl~~nv~g~~~L~~~~~~~-----~~~~iV~~SS 375 (496)
T 3mje_A 302 ADREALAALLAELPED-APLTAVFHSAGVAHDDAPVADLTLGQLDALMRAKLTAARHLHELTADL-----DLDAFVLFSS 375 (496)
T ss_dssp TCHHHHHHHHHTCCTT-SCEEEEEECCCCCCSCCCTTTCCHHHHHHHHHTTHHHHHHHHHHHTTS-----CCSEEEEEEE
T ss_pred CCHHHHHHHHHHHHHh-CCCeEEEECCcccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHhhcc-----CCCEEEEEeC
Confidence 9999999999998776 799999999999733688999999999999999999999998877554 3578999999
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhh-hhhhhhcCCHHHHHHHhc
Q 010380 333 AGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNK-QMFNIICELPETVARTLV 411 (512)
Q Consensus 333 ~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~-~~~~~~~~~pe~vA~~~l 411 (512)
. ++..+.+++..|+++|+++++|++.++ ..||++++|+||++.|+.+......... ....+...+|++++..+.
T Consensus 376 ~-a~~~g~~g~~~YaAaKa~ldala~~~~----~~Gi~v~sV~pG~w~~~gm~~~~~~~~~l~~~g~~~l~pe~~~~~l~ 450 (496)
T 3mje_A 376 G-AAVWGSGGQPGYAAANAYLDALAEHRR----SLGLTASSVAWGTWGEVGMATDPEVHDRLVRQGVLAMEPEHALGALD 450 (496)
T ss_dssp H-HHHTTCTTCHHHHHHHHHHHHHHHHHH----HTTCCCEEEEECEESSSCC------CHHHHHTTEEEECHHHHHHHHH
T ss_pred h-HhcCCCCCcHHHHHHHHHHHHHHHHHH----hcCCeEEEEECCcccCCccccChHHHHHHHhcCCCCCCHHHHHHHHH
Confidence 8 677888999999999999999887654 4599999999999977654322111111 111223346777776554
Q ss_pred ccc
Q 010380 412 PRI 414 (512)
Q Consensus 412 ~r~ 414 (512)
..+
T Consensus 451 ~~l 453 (496)
T 3mje_A 451 QML 453 (496)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
|
| >3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.2e-27 Score=267.73 Aligned_cols=178 Identities=19% Similarity=0.216 Sum_probs=159.6
Q ss_pred CCCEEEEECCCChHHHHHHHHHH-HCCC-EEEEEEcC---hhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEc
Q 010380 176 GPRNVVITGSTRGLGKALAREFL-LSGD-RVVVASRS---SESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIAC 250 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La-~~Ga-~Vvl~~R~---~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~ 250 (512)
.+|++|||||++|||+++|++|+ ++|+ +|++++|+ .+.+++..+++++ .+.++.++.|
T Consensus 529 ~~~~~lItGg~~GlG~aiA~~la~~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~-----------------~G~~v~~~~~ 591 (795)
T 3slk_A 529 AAGTVLVTGGTGALGAEVARHLVIERGVRNLVLVSRRGPAASGAAELVAQLTA-----------------YGAEVSLQAC 591 (795)
T ss_dssp TTSEEEEETTTSHHHHHHHHHHHHTSSCCEEEEEESSGGGSTTHHHHHHHHHH-----------------TTCEEEEEEC
T ss_pred cccceeeccCCCCcHHHHHHHHHHHcCCcEEEEeccCccchHHHHHHHHHHHh-----------------cCCcEEEEEe
Confidence 58999999999999999999999 7999 69999999 4556677777765 4678999999
Q ss_pred cCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEee
Q 010380 251 DVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNM 330 (512)
Q Consensus 251 Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~v 330 (512)
|++|+++++++++++.+.+ +||+||||||+.. ..++.+++.++|++++++|+.|++++++++.|.| +||++
T Consensus 592 Dvsd~~~v~~~~~~~~~~~-~id~lVnnAGv~~-~~~~~~~t~e~~~~~~~~nv~G~~~l~~~~~~~l-------~iV~~ 662 (795)
T 3slk_A 592 DVADRETLAKVLASIPDEH-PLTAVVHAAGVLD-DGVSESLTVERLDQVLRPKVDGARNLLELIDPDV-------ALVLF 662 (795)
T ss_dssp CTTCHHHHHHHHHTSCTTS-CEEEEEECCCCCC-CCCGGGCCHHHHHHHHCCCCCHHHHHHHHSCTTS-------EEEEE
T ss_pred ecCCHHHHHHHHHHHHHhC-CCEEEEECCCcCC-CCchhhCCHHHHHHHHHHHHHHHHHHHHHHhhCC-------EEEEE
Confidence 9999999999999988776 9999999999987 6889999999999999999999999999997766 69999
Q ss_pred cCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcc
Q 010380 331 DGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLL 384 (512)
Q Consensus 331 SS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~ 384 (512)
||. ++..+.++++.|++||+ |+++|++++++.||++|+|+||++.|+++
T Consensus 663 SS~-ag~~g~~g~~~YaAaka----~~~alA~~~~~~Gi~v~sI~pG~v~t~g~ 711 (795)
T 3slk_A 663 SSV-SGVLGSGGQGNYAAANS----FLDALAQQRQSRGLPTRSLAWGPWAEHGM 711 (795)
T ss_dssp EET-HHHHTCSSCHHHHHHHH----HHHHHHHHHHHTTCCEEEEEECCCSCCCH
T ss_pred ccH-HhcCCCCCCHHHHHHHH----HHHHHHHHHHHcCCeEEEEECCeECcchh
Confidence 998 78889999999999995 66677777777899999999999999865
|
| >2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.7e-27 Score=227.50 Aligned_cols=202 Identities=18% Similarity=0.212 Sum_probs=159.2
Q ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhh
Q 010380 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPAD 257 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~s 257 (512)
|++|||||++|||++++++|+++|++|++++|+.++++ . .+.+|++|+++
T Consensus 2 k~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~~~~~---------------------------~---~~~~D~~~~~~ 51 (255)
T 2dkn_A 2 SVIAITGSASGIGAALKELLARAGHTVIGIDRGQADIE---------------------------A---DLSTPGGRETA 51 (255)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEE---------------------------C---CTTSHHHHHHH
T ss_pred cEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCChhHcc---------------------------c---cccCCcccHHH
Confidence 68999999999999999999999999999999865421 0 15789999999
Q ss_pred HHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCCC
Q 010380 258 VQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGG 337 (512)
Q Consensus 258 v~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~~ 337 (512)
++++++++ .+++|+||||||.... .+++++.+++|+.++++++++++|.|+++ +.++||++||. ...
T Consensus 52 ~~~~~~~~---~~~~d~vi~~Ag~~~~--------~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~~~iv~~sS~-~~~ 118 (255)
T 2dkn_A 52 VAAVLDRC---GGVLDGLVCCAGVGVT--------AANSGLVVAVNYFGVSALLDGLAEALSRG-QQPAAVIVGSI-AAT 118 (255)
T ss_dssp HHHHHHHH---TTCCSEEEECCCCCTT--------SSCHHHHHHHHTHHHHHHHHHHHHHHHTS-SSCEEEEECCG-GGG
T ss_pred HHHHHHHc---CCCccEEEECCCCCCc--------chhHHHHHHHHhHHHHHHHHHHHHHhhhc-CCceEEEEecc-ccc
Confidence 99888754 3789999999997541 13488999999999999999999999876 46899999987 333
Q ss_pred CCC--------------------------CCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchh
Q 010380 338 SST--------------------------PLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQ 391 (512)
Q Consensus 338 ~~~--------------------------p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~ 391 (512)
.+. ++...|++||++++.+++.++.|+.+.||++++|+||+|.|++......
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~pg~v~~~~~~~~~~-- 196 (255)
T 2dkn_A 119 QPGAAELPMVEAMLAGDEARAIELAEQQGQTHLAYAGSKYAVTCLARRNVVDWAGRGVRLNVVAPGAVETPLLQASKA-- 196 (255)
T ss_dssp STTGGGCHHHHHHHHTCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECCBCSHHHHHHHH--
T ss_pred cccccccchhhhhcccchhhhhhhccccCCcchhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcCCcccchhhhhccc--
Confidence 332 4667899999999999999999998889999999999999997532100
Q ss_pred hhhhhhhhcCCHHHHHHH--hccccccchhhhhhhhhcCChH
Q 010380 392 NKQMFNIICELPETVART--LVPRIRVVKGSGKAINYLTPPR 431 (512)
Q Consensus 392 ~~~~~~~~~~~pe~vA~~--~l~r~~~~~~va~~v~~L~s~~ 431 (512)
.. ...+..... +.++...++|+++++.+++.+.
T Consensus 197 -----~~--~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~ 231 (255)
T 2dkn_A 197 -----DP--RYGESTRRFVAPLGRGSEPREVAEAIAFLLGPQ 231 (255)
T ss_dssp -----CT--TTHHHHHSCCCTTSSCBCHHHHHHHHHHHHSGG
T ss_pred -----ch--hhHHHHHHHHHHhcCCCCHHHHHHHHHHHhCCC
Confidence 00 011111111 4456788899999998888765
|
| >2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=5.5e-25 Score=236.78 Aligned_cols=210 Identities=20% Similarity=0.191 Sum_probs=164.6
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcChh---hHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEcc
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRSSE---SVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACD 251 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~~---~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~D 251 (512)
.++++|||||++|||+++|++|+++|+ +|++++|+.. .++++.+++.+ .+.++.++.||
T Consensus 225 ~~~~vLITGgtGgIG~~la~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~-----------------~g~~v~~~~~D 287 (486)
T 2fr1_A 225 PTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEA-----------------LGARTTVAACD 287 (486)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHH-----------------TTCEEEEEECC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCCCCCcHHHHHHHHHHHh-----------------cCCEEEEEEeC
Confidence 579999999999999999999999999 5999999875 45555566654 45789999999
Q ss_pred CCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeec
Q 010380 252 VCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD 331 (512)
Q Consensus 252 ltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vS 331 (512)
++|+++++++++.+ +.+++||+||||||+.. ..++.+.+.+++++++++|+.|++++.+++.+ . +.++||++|
T Consensus 288 v~d~~~v~~~~~~i-~~~g~ld~VIh~AG~~~-~~~l~~~~~~~~~~~~~~nv~g~~~L~~~~~~----~-~~~~~V~~S 360 (486)
T 2fr1_A 288 VTDRESVRELLGGI-GDDVPLSAVFHAAATLD-DGTVDTLTGERIERASRAKVLGARNLHELTRE----L-DLTAFVLFS 360 (486)
T ss_dssp TTCHHHHHHHHHTS-CTTSCEEEEEECCCCCC-CCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTT----S-CCSEEEEEE
T ss_pred CCCHHHHHHHHHHH-HhcCCCcEEEECCccCC-CCccccCCHHHHHHHHHHHHHHHHHHHHHhCc----C-CCCEEEEEc
Confidence 99999999999988 56789999999999987 67888999999999999999999999987643 2 468999999
Q ss_pred CCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCC-cccCCcchhhhhhhhhhcCCHHHHHHHh
Q 010380 332 GAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTD-LLLSGSTIQNKQMFNIICELPETVARTL 410 (512)
Q Consensus 332 S~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~-~~~~~~~~~~~~~~~~~~~~pe~vA~~~ 410 (512)
|. ++..+.+++..|+++|++++.|++.++ ..||++++|+||++.|+ |...... ...........+|+++++.+
T Consensus 361 S~-a~~~g~~g~~~Yaaaka~l~~la~~~~----~~gi~v~~i~pG~~~~~gm~~~~~~-~~~~~~g~~~i~~e~~a~~l 434 (486)
T 2fr1_A 361 SF-ASAFGAPGLGGYAPGNAYLDGLAQQRR----SDGLPATAVAWGTWAGSGMAEGPVA-DRFRRHGVIEMPPETACRAL 434 (486)
T ss_dssp EH-HHHTCCTTCTTTHHHHHHHHHHHHHHH----HTTCCCEEEEECCBC-------------CTTTTEECBCHHHHHHHH
T ss_pred Ch-HhcCCCCCCHHHHHHHHHHHHHHHHHH----hcCCeEEEEECCeeCCCcccchhHH-HHHHhcCCCCCCHHHHHHHH
Confidence 97 566778899999999999999877554 45899999999999886 4422110 00000112234788888777
Q ss_pred ccccc
Q 010380 411 VPRIR 415 (512)
Q Consensus 411 l~r~~ 415 (512)
...+.
T Consensus 435 ~~~l~ 439 (486)
T 2fr1_A 435 QNALD 439 (486)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 65544
|
| >2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.4e-24 Score=232.97 Aligned_cols=207 Identities=17% Similarity=0.208 Sum_probs=166.0
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcChh---hHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEcc
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRSSE---SVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACD 251 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~~---~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~D 251 (512)
.++++|||||++|||+++|++|+++|+ +|++++|+.. .+++..+++.+ .+.++.++.||
T Consensus 258 ~~~~vLITGgtGgIG~~lA~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~-----------------~g~~v~~~~~D 320 (511)
T 2z5l_A 258 PSGTVLITGGMGAIGRRLARRLAAEGAERLVLTSRRGPEAPGAAELAEELRG-----------------HGCEVVHAACD 320 (511)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHT-----------------TTCEEEEEECC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCcEEEEEecCCcccHHHHHHHHHHHh-----------------cCCEEEEEEeC
Confidence 579999999999999999999999999 6999999864 34555555543 45789999999
Q ss_pred CCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeec
Q 010380 252 VCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD 331 (512)
Q Consensus 252 ltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vS 331 (512)
++|.++++++++. +++|+||||||+.. ..++.+.+.+++++++++|+.|++++.+.+.+. .+.++||++|
T Consensus 321 vtd~~~v~~~~~~-----~~ld~VVh~AGv~~-~~~~~~~~~~~~~~~~~~nv~g~~~L~~~~~~~----~~~~~~V~~S 390 (511)
T 2z5l_A 321 VAERDALAALVTA-----YPPNAVFHTAGILD-DAVIDTLSPESFETVRGAKVCGAELLHQLTADI----KGLDAFVLFS 390 (511)
T ss_dssp SSCHHHHHHHHHH-----SCCSEEEECCCCCC-CBCGGGCCHHHHHHHHHHHHHHHHHHHHHTSSC----TTCCCEEEEE
T ss_pred CCCHHHHHHHHhc-----CCCcEEEECCcccC-CcccccCCHHHHHHHHHHHHHHHHHHHHHHhhc----cCCCEEEEEe
Confidence 9999999998876 78999999999987 678889999999999999999999998876432 1357899999
Q ss_pred CCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcc-cCCcccCCcchhhhhhhhhhcCCHHHHHHHh
Q 010380 332 GAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMV-LTDLLLSGSTIQNKQMFNIICELPETVARTL 410 (512)
Q Consensus 332 S~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V-~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~ 410 (512)
|. ++..+.+++..|+++|++++.|++.++ ..|+++++|+||++ +|+|...... .......+...+|+++++.+
T Consensus 391 S~-a~~~g~~g~~~YaaaKa~ld~la~~~~----~~gi~v~sv~pG~~~~tgm~~~~~~-~~~~~~g~~~l~~e~~a~~l 464 (511)
T 2z5l_A 391 SV-TGTWGNAGQGAYAAANAALDALAERRR----AAGLPATSVAWGLWGGGGMAAGAGE-ESLSRRGLRAMDPDAAVDAL 464 (511)
T ss_dssp EG-GGTTCCTTBHHHHHHHHHHHHHHHHHH----TTTCCCEEEEECCBCSTTCCCCHHH-HHHHHHTBCCBCHHHHHHHH
T ss_pred CH-HhcCCCCCCHHHHHHHHHHHHHHHHHH----HcCCcEEEEECCcccCCcccccccH-HHHHhcCCCCCCHHHHHHHH
Confidence 98 677788999999999999999988653 56999999999999 7888643211 11111122345788888777
Q ss_pred ccccc
Q 010380 411 VPRIR 415 (512)
Q Consensus 411 l~r~~ 415 (512)
+..+.
T Consensus 465 ~~al~ 469 (511)
T 2z5l_A 465 LGAMG 469 (511)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 65544
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=7.4e-24 Score=209.74 Aligned_cols=197 Identities=14% Similarity=0.154 Sum_probs=155.6
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCCh
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEP 255 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~ 255 (512)
++|+||||||+||||++++++|+++|++|++++|++.+. .+.++.++.+|++|+
T Consensus 2 ~~k~vlVTGasg~IG~~la~~L~~~G~~V~~~~r~~~~~--------------------------~~~~~~~~~~Dl~d~ 55 (267)
T 3rft_A 2 AMKRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDP--------------------------AGPNEECVQCDLADA 55 (267)
T ss_dssp CEEEEEEESTTSHHHHHHHHHTGGGEEEEEEEESSCCCC--------------------------CCTTEEEEECCTTCH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCccc--------------------------cCCCCEEEEcCCCCH
Confidence 468999999999999999999999999999999986542 135688999999999
Q ss_pred hhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCC
Q 010380 256 ADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGS 335 (512)
Q Consensus 256 ~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a 335 (512)
++++++++ ++|+||||||+.. .++|++++++|+.|++++++++.+ . +.++||++||...
T Consensus 56 ~~~~~~~~-------~~D~vi~~Ag~~~---------~~~~~~~~~~N~~g~~~l~~a~~~----~-~~~~iv~~SS~~~ 114 (267)
T 3rft_A 56 NAVNAMVA-------GCDGIVHLGGISV---------EKPFEQILQGNIIGLYNLYEAARA----H-GQPRIVFASSNHT 114 (267)
T ss_dssp HHHHHHHT-------TCSEEEECCSCCS---------CCCHHHHHHHHTHHHHHHHHHHHH----T-TCCEEEEEEEGGG
T ss_pred HHHHHHHc-------CCCEEEECCCCcC---------cCCHHHHHHHHHHHHHHHHHHHHH----c-CCCEEEEEcchHH
Confidence 99988876 6899999999842 245789999999999999999843 2 4679999998632
Q ss_pred CC-----------CCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHH
Q 010380 336 GG-----------SSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPE 404 (512)
Q Consensus 336 ~~-----------~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe 404 (512)
.. .+.+....|++||++++.+++.++.++ |+++++|.||.|.+++.... ....+ ..++
T Consensus 115 ~g~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~a~~~---g~~~~~vr~~~v~~~~~~~~------~~~~~--~~~~ 183 (267)
T 3rft_A 115 IGYYPQTERLGPDVPARPDGLYGVSKCFGENLARMYFDKF---GQETALVRIGSCTPEPNNYR------MLSTW--FSHD 183 (267)
T ss_dssp GTTSBTTSCBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH---CCCEEEEEECBCSSSCCSTT------HHHHB--CCHH
T ss_pred hCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCeEEEEEeecccCCCCCCC------ceeeE--EcHH
Confidence 21 334556889999999999999999987 78999999999998864321 11121 2677
Q ss_pred HHHHHhccccccchhhhhhhhhcCChH
Q 010380 405 TVARTLVPRIRVVKGSGKAINYLTPPR 431 (512)
Q Consensus 405 ~vA~~~l~r~~~~~~va~~v~~L~s~~ 431 (512)
++++.+. ++..+++++..+.|++++.
T Consensus 184 d~a~~~~-~~~~~~~~~~~~~~~~s~~ 209 (267)
T 3rft_A 184 DFVSLIE-AVFRAPVLGCPVVWGASAN 209 (267)
T ss_dssp HHHHHHH-HHHHCSCCCSCEEEECCCC
T ss_pred HHHHHHH-HHHhCCCCCceEEEEeCCC
Confidence 7877554 4445566777788888765
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.87 E-value=6.2e-22 Score=191.69 Aligned_cols=161 Identities=17% Similarity=0.137 Sum_probs=126.0
Q ss_pred ccCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceE-EEEE
Q 010380 171 EHCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKV-AGIA 249 (512)
Q Consensus 171 ~~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v-~~v~ 249 (512)
+..++++|+|+||||+|+||++++++|+++|++|++++|+++++++.. + .++ .++.
T Consensus 15 ~~~~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~----~-------------------~~~~~~~~ 71 (236)
T 3e8x_A 15 ENLYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELR----E-------------------RGASDIVV 71 (236)
T ss_dssp ------CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHH----H-------------------TTCSEEEE
T ss_pred cccCcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHH----h-------------------CCCceEEE
Confidence 345688999999999999999999999999999999999988765421 1 246 7899
Q ss_pred ccCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEe
Q 010380 250 CDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFN 329 (512)
Q Consensus 250 ~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~ 329 (512)
+|++ + .+.+.++++|+||||||... .+++++.+++|+.+++++++++... +.++||+
T Consensus 72 ~Dl~--~-------~~~~~~~~~D~vi~~ag~~~---------~~~~~~~~~~n~~~~~~l~~a~~~~-----~~~~iv~ 128 (236)
T 3e8x_A 72 ANLE--E-------DFSHAFASIDAVVFAAGSGP---------HTGADKTILIDLWGAIKTIQEAEKR-----GIKRFIM 128 (236)
T ss_dssp CCTT--S-------CCGGGGTTCSEEEECCCCCT---------TSCHHHHHHTTTHHHHHHHHHHHHH-----TCCEEEE
T ss_pred cccH--H-------HHHHHHcCCCEEEECCCCCC---------CCCccccchhhHHHHHHHHHHHHHc-----CCCEEEE
Confidence 9998 2 33445568999999999753 1458899999999999999988442 3579999
Q ss_pred ecCCCCCCCCC---CCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCccc
Q 010380 330 MDGAGSGGSST---PLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLL 385 (512)
Q Consensus 330 vSS~~a~~~~~---p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~ 385 (512)
+||.+ ...+. +....|+++|++++.+.+ ..||++++|+||++.++...
T Consensus 129 ~SS~~-~~~~~~~~~~~~~Y~~sK~~~e~~~~-------~~gi~~~~lrpg~v~~~~~~ 179 (236)
T 3e8x_A 129 VSSVG-TVDPDQGPMNMRHYLVAKRLADDELK-------RSSLDYTIVRPGPLSNEEST 179 (236)
T ss_dssp ECCTT-CSCGGGSCGGGHHHHHHHHHHHHHHH-------HSSSEEEEEEECSEECSCCC
T ss_pred EecCC-CCCCCCChhhhhhHHHHHHHHHHHHH-------HCCCCEEEEeCCcccCCCCC
Confidence 99963 33332 456789999999998876 45899999999999998653
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.3e-21 Score=241.42 Aligned_cols=178 Identities=19% Similarity=0.161 Sum_probs=139.5
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEEcChhhHH---HHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEcc
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDR-VVVASRSSESVR---MTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACD 251 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~-Vvl~~R~~~~l~---~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~D 251 (512)
.+|++|||||++|||+++|++|+++|++ |++++|+..+.+ +..+++.+ .+.++.++.||
T Consensus 1883 ~~k~~lITGgs~GIG~aia~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~-----------------~g~~v~~~~~D 1945 (2512)
T 2vz8_A 1883 PHKSYVITGGLGGFGLQLAQWLRLRGAQKLVLTSRSGIRTGYQARQVREWRR-----------------QGVQVLVSTSN 1945 (2512)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCCEEEEECSSCCCSHHHHHHHHHHHH-----------------TTCEEEEECCC
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEeCCCcchHHHHHHHHHHHh-----------------CCCEEEEEecC
Confidence 6899999999999999999999999996 888999865543 33344433 35689999999
Q ss_pred CCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeec
Q 010380 252 VCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD 331 (512)
Q Consensus 252 ltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vS 331 (512)
++|.++++++++++. ++|+||+||||||+.. ..++.+++.++|++++++|+.|++++++++.+.|.+. |+||++|
T Consensus 1946 vsd~~~v~~~~~~~~-~~g~id~lVnnAgv~~-~~~~~~~t~e~~~~~~~~nv~g~~~l~~~~~~~~~~~---g~iV~iS 2020 (2512)
T 2vz8_A 1946 ASSLDGARSLITEAT-QLGPVGGVFNLAMVLR-DAVLENQTPEFFQDVSKPKYSGTANLDRVTREACPEL---DYFVIFS 2020 (2512)
T ss_dssp SSSHHHHHHHHHHHH-HHSCEEEEEECCCC-----------------CTTTTHHHHHHHHHHHHHHCTTC---CEEEEEC
T ss_pred CCCHHHHHHHHHHHH-hcCCCcEEEECCCcCC-CCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHhcccC---CEEEEec
Confidence 999999999999986 4899999999999986 6789999999999999999999999999999998653 7999999
Q ss_pred CCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCccc
Q 010380 332 GAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVL 380 (512)
Q Consensus 332 S~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~ 380 (512)
|. ++..+.++++.|++||+++++|++.++.+ |+...++..|.+.
T Consensus 2021 S~-ag~~g~~g~~~Y~aaKaal~~l~~~rr~~----Gl~~~a~~~g~~~ 2064 (2512)
T 2vz8_A 2021 SV-SCGRGNAGQANYGFANSAMERICEKRRHD----GLPGLAVQWGAIG 2064 (2512)
T ss_dssp CH-HHHTTCTTCHHHHHHHHHHHHHHHHHHHT----TSCCCEEEECCBC
T ss_pred ch-hhcCCCCCcHHHHHHHHHHHHHHHHHHHC----CCcEEEEEccCcC
Confidence 98 67788899999999999999999987765 6777777777653
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=99.84 E-value=2.8e-20 Score=188.48 Aligned_cols=176 Identities=13% Similarity=0.123 Sum_probs=139.8
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEE-EccC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGI-ACDV 252 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v-~~Dl 252 (512)
.+++++||||||+|+||.+++++|+++|++|++++|+.++.+.+.+.+... .+.++.++ .+|+
T Consensus 8 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~----------------~~~~~~~~~~~D~ 71 (342)
T 1y1p_A 8 LPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAK----------------YPGRFETAVVEDM 71 (342)
T ss_dssp SCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHH----------------STTTEEEEECSCT
T ss_pred CCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHHHhhcc----------------CCCceEEEEecCC
Confidence 467899999999999999999999999999999999987766554444321 12457778 8999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|.++++++++ ++|+||||||.... . +++++.+++|+.++.++++++.+. .+.++||++||
T Consensus 72 ~d~~~~~~~~~-------~~d~vih~A~~~~~-~-------~~~~~~~~~n~~g~~~ll~~~~~~----~~~~~iv~~SS 132 (342)
T 1y1p_A 72 LKQGAYDEVIK-------GAAGVAHIASVVSF-S-------NKYDEVVTPAIGGTLNALRAAAAT----PSVKRFVLTSS 132 (342)
T ss_dssp TSTTTTTTTTT-------TCSEEEECCCCCSC-C-------SCHHHHHHHHHHHHHHHHHHHHTC----TTCCEEEEECC
T ss_pred cChHHHHHHHc-------CCCEEEEeCCCCCC-C-------CCHHHHHHHHHHHHHHHHHHHHhC----CCCcEEEEecc
Confidence 99998877654 69999999997541 1 246789999999999999988652 23579999998
Q ss_pred CCCCCCCC------------------------------CCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCC
Q 010380 333 AGSGGSST------------------------------PLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTD 382 (512)
Q Consensus 333 ~~a~~~~~------------------------------p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~ 382 (512)
......+. .+...|+.||++.+.+++.++.++.. +++++++.||.|.++
T Consensus 133 ~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~-~~~~~~~rp~~v~g~ 211 (342)
T 1y1p_A 133 TVSALIPKPNVEGIYLDEKSWNLESIDKAKTLPESDPQKSLWVYAASKTEAELAAWKFMDENKP-HFTLNAVLPNYTIGT 211 (342)
T ss_dssp GGGTCCCCTTCCCCEECTTCCCHHHHHHHHHSCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHCC-SSEEEEEEESEEECC
T ss_pred HHHhcCCCCCCCCcccCccccCchhhhhhccccccccccchHHHHHHHHHHHHHHHHHHHhcCC-CceEEEEcCCceECC
Confidence 73321111 12357999999999999999999876 899999999999998
Q ss_pred ccc
Q 010380 383 LLL 385 (512)
Q Consensus 383 ~~~ 385 (512)
...
T Consensus 212 ~~~ 214 (342)
T 1y1p_A 212 IFD 214 (342)
T ss_dssp CSC
T ss_pred CCC
Confidence 754
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.8e-21 Score=188.48 Aligned_cols=197 Identities=17% Similarity=0.137 Sum_probs=140.8
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 175 AGPRNVVITGSTRGLGKALAREFLLSGD--RVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 175 l~gk~vLVTGassGIG~aiA~~La~~Ga--~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
+++|+++||||+||||++++++|+++|+ +|++++|+++++++. ...++.++.+|+
T Consensus 16 m~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~-----------------------~~~~~~~~~~D~ 72 (242)
T 2bka_A 16 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE-----------------------AYKNVNQEVVDF 72 (242)
T ss_dssp HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSG-----------------------GGGGCEEEECCG
T ss_pred hcCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCcccc-----------------------ccCCceEEecCc
Confidence 4678999999999999999999999999 999999987643211 012567899999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|+++++++++ ++|+||||||... ..++++..+++|+.++.++++++. +. +.++||++||
T Consensus 73 ~d~~~~~~~~~-------~~d~vi~~ag~~~--------~~~~~~~~~~~n~~~~~~~~~~~~----~~-~~~~iv~~SS 132 (242)
T 2bka_A 73 EKLDDYASAFQ-------GHDVGFCCLGTTR--------GKAGAEGFVRVDRDYVLKSAELAK----AG-GCKHFNLLSS 132 (242)
T ss_dssp GGGGGGGGGGS-------SCSEEEECCCCCH--------HHHHHHHHHHHHTHHHHHHHHHHH----HT-TCCEEEEECC
T ss_pred CCHHHHHHHhc-------CCCEEEECCCccc--------ccCCcccceeeeHHHHHHHHHHHH----HC-CCCEEEEEcc
Confidence 99998877654 7999999999743 124578899999999988887653 33 4579999998
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCe-EEEEEeCCcccCCcccCCcchhhhhhh-hhhcCCHHHHHHHh
Q 010380 333 AGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKV-GVHTASPGMVLTDLLLSGSTIQNKQMF-NIICELPETVARTL 410 (512)
Q Consensus 333 ~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GI-rVn~V~PG~V~T~~~~~~~~~~~~~~~-~~~~~~pe~vA~~~ 410 (512)
.. ... +....|+++|++++.+++.+ ++ ++++|+||++.|++...... .... ......|.. ..
T Consensus 133 ~~-~~~--~~~~~Y~~sK~~~e~~~~~~-------~~~~~~~vrpg~v~~~~~~~~~~---~~~~~~~~~~~~~~---~~ 196 (242)
T 2bka_A 133 KG-ADK--SSNFLYLQVKGEVEAKVEEL-------KFDRYSVFRPGVLLCDRQESRPG---EWLVRKFFGSLPDS---WA 196 (242)
T ss_dssp TT-CCT--TCSSHHHHHHHHHHHHHHTT-------CCSEEEEEECCEEECTTGGGSHH---HHHHHHHHCSCCTT---GG
T ss_pred Cc-CCC--CCcchHHHHHHHHHHHHHhc-------CCCCeEEEcCceecCCCCCCcHH---HHHHHHhhcccCcc---cc
Confidence 73 332 34568999999999998753 45 89999999999997432110 0000 000001100 00
Q ss_pred ccccccchhhhhhhhhcCCh
Q 010380 411 VPRIRVVKGSGKAINYLTPP 430 (512)
Q Consensus 411 l~r~~~~~~va~~v~~L~s~ 430 (512)
..+...++|+++++.+++.+
T Consensus 197 ~~~~~~~~dva~~~~~~~~~ 216 (242)
T 2bka_A 197 SGHSVPVVTVVRAMLNNVVR 216 (242)
T ss_dssp GGTEEEHHHHHHHHHHHHTS
T ss_pred CCcccCHHHHHHHHHHHHhC
Confidence 23456777888887777654
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=3.6e-20 Score=177.43 Aligned_cols=144 Identities=11% Similarity=0.151 Sum_probs=117.0
Q ss_pred CEEEEECCCChHHHHHHHHHH-HCCCEEEEEEcChh-hHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCCh
Q 010380 178 RNVVITGSTRGLGKALAREFL-LSGDRVVVASRSSE-SVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEP 255 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La-~~Ga~Vvl~~R~~~-~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~ 255 (512)
|+++||||+||||++++++|+ ++|++|++++|+++ +++++. + .+.++.++.+|++|+
T Consensus 6 k~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~----~-----------------~~~~~~~~~~D~~d~ 64 (221)
T 3r6d_A 6 XYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEI----I-----------------DHERVTVIEGSFQNP 64 (221)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHH----H-----------------TSTTEEEEECCTTCH
T ss_pred EEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhc----c-----------------CCCceEEEECCCCCH
Confidence 789999999999999999999 89999999999987 554332 1 235688899999999
Q ss_pred hhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCC
Q 010380 256 ADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGS 335 (512)
Q Consensus 256 ~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a 335 (512)
++++++++ ++|+||||||.. |+. ++.+++.|++. +.++||++||. .
T Consensus 65 ~~~~~~~~-------~~d~vv~~ag~~--------------------n~~-----~~~~~~~~~~~-~~~~iv~iSs~-~ 110 (221)
T 3r6d_A 65 GXLEQAVT-------NAEVVFVGAMES--------------------GSD-----MASIVKALSRX-NIRRVIGVSMA-G 110 (221)
T ss_dssp HHHHHHHT-------TCSEEEESCCCC--------------------HHH-----HHHHHHHHHHT-TCCEEEEEEET-T
T ss_pred HHHHHHHc-------CCCEEEEcCCCC--------------------Chh-----HHHHHHHHHhc-CCCeEEEEeec-e
Confidence 99888765 689999999852 222 78888999876 56799999987 4
Q ss_pred CCCCCCCcc----------hhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCc
Q 010380 336 GGSSTPLTA----------VYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDL 383 (512)
Q Consensus 336 ~~~~~p~~~----------~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~ 383 (512)
...+.+... .|+++|.+++.+.+. .||++++|+||++.++.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~y~~~K~~~e~~~~~-------~~i~~~~vrpg~v~~~~ 161 (221)
T 3r6d_A 111 LSGEFPVALEKWTFDNLPISYVQGERQARNVLRE-------SNLNYTILRLTWLYNDP 161 (221)
T ss_dssp TTSCSCHHHHHHHHHTSCHHHHHHHHHHHHHHHH-------SCSEEEEEEECEEECCT
T ss_pred ecCCCCcccccccccccccHHHHHHHHHHHHHHh-------CCCCEEEEechhhcCCC
Confidence 444444433 899999999987753 58999999999999873
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=4.8e-20 Score=189.33 Aligned_cols=170 Identities=18% Similarity=0.234 Sum_probs=140.1
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHC-CC-EEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEcc
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLS-GD-RVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACD 251 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~-Ga-~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~D 251 (512)
.+++|+||||||+|+||.+++++|+++ |+ +|++++|++.+.+.+.+++ ...++.++.+|
T Consensus 18 ~~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~-------------------~~~~v~~~~~D 78 (344)
T 2gn4_A 18 MLDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEF-------------------NDPRMRFFIGD 78 (344)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHH-------------------CCTTEEEEECC
T ss_pred hhCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHh-------------------cCCCEEEEECC
Confidence 478899999999999999999999999 97 9999999988766554443 12468889999
Q ss_pred CCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeec
Q 010380 252 VCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD 331 (512)
Q Consensus 252 ltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vS 331 (512)
++|.+++.++++ ++|+||||||... .+. ...+.++.+++|+.|+.++++++.+. +.++||++|
T Consensus 79 l~d~~~l~~~~~-------~~D~Vih~Aa~~~--~~~---~~~~~~~~~~~Nv~gt~~l~~aa~~~-----~v~~~V~~S 141 (344)
T 2gn4_A 79 VRDLERLNYALE-------GVDICIHAAALKH--VPI---AEYNPLECIKTNIMGASNVINACLKN-----AISQVIALS 141 (344)
T ss_dssp TTCHHHHHHHTT-------TCSEEEECCCCCC--HHH---HHHSHHHHHHHHHHHHHHHHHHHHHT-----TCSEEEEEC
T ss_pred CCCHHHHHHHHh-------cCCEEEECCCCCC--CCc---hhcCHHHHHHHHHHHHHHHHHHHHhC-----CCCEEEEec
Confidence 999998877654 6999999999753 111 22345689999999999999998764 356899999
Q ss_pred CCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCc
Q 010380 332 GAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDL 383 (512)
Q Consensus 332 S~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~ 383 (512)
|. ... .+...|++||++++.++++++.++.+.|+++++|.||.|.++.
T Consensus 142 S~-~~~---~p~~~Y~~sK~~~E~~~~~~~~~~~~~g~~~~~vRpg~v~g~~ 189 (344)
T 2gn4_A 142 TD-KAA---NPINLYGATKLCSDKLFVSANNFKGSSQTQFSVVRYGNVVGSR 189 (344)
T ss_dssp CG-GGS---SCCSHHHHHHHHHHHHHHHGGGCCCSSCCEEEEECCCEETTCT
T ss_pred CC-ccC---CCccHHHHHHHHHHHHHHHHHHHhCCCCcEEEEEEeccEECCC
Confidence 86 232 2357899999999999999999988889999999999999864
|
| >4ggo_A Trans-2-enoyl-COA reductase; rossmann fold, oxidoreductase; 2.00A {Treponema denticola atcc 35405} PDB: 4ggp_A | Back alignment and structure |
|---|
Probab=99.81 E-value=6.1e-20 Score=189.21 Aligned_cols=191 Identities=14% Similarity=0.066 Sum_probs=147.1
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHH-HCCCEEEEEEcChhh------------HHHHHHHHHHHHhhhhhhcCCCCccc
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFL-LSGDRVVVASRSSES------------VRMTVTELEENLKEGMMAAGGSSKKN 239 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La-~~Ga~Vvl~~R~~~~------------l~~~~~el~~~~~~~~~~~g~~~~~~ 239 (512)
....+|++||||||+|||+|++..|+ +.|+.|++++++.+. .....+++++
T Consensus 46 ~~~~pK~vLVtGaSsGiGlA~AialAf~~GA~vi~v~~~~~~~~~~~atag~~~~~a~~~~i~~---------------- 109 (401)
T 4ggo_A 46 GAKAPKNVLVLGCSNGYGLASRITAAFGYGAATIGVSFEKAGSETKYGTPGWYNNLAFDEAAKR---------------- 109 (401)
T ss_dssp TSCCCCEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHH----------------
T ss_pred ccCCCCEEEEECCCCcHHHHHHHHHHhhCCCCEEEEecCCcccccccccccchhHHHHHHHHHH----------------
Confidence 45689999999999999999999999 689999999886432 2233344444
Q ss_pred ccCceEEEEEccCCChhhHHHHHHHHHHHcCCCcccccccccCCC------------CCCC-------------------
Q 010380 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKG------------FKPL------------------- 288 (512)
Q Consensus 240 ~~g~~v~~v~~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~------------~~~~------------------- 288 (512)
.|.+...+.||++|+++++++++++.+++|+||+||||++.... .+|+
T Consensus 110 -~G~~a~~i~~Dv~d~e~i~~vi~~i~~~~G~IDiLVhS~A~~~r~~p~~g~~~~S~LKpi~~~~~~~~ldt~~~~i~~~ 188 (401)
T 4ggo_A 110 -EGLYSVTIDGDAFSDEIKAQVIEEAKKKGIKFDLIVYSLASPVRTDPDTGIMHKSVLKPFGKTFTGKTVDPFTGELKEI 188 (401)
T ss_dssp -HTCCEEEEESCTTSHHHHHHHHHHHHHTTCCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEECTTTCCEEEE
T ss_pred -cCCCceeEeCCCCCHHHHHHHHHHHHHhcCCCCEEEEecccccccCCCCCceeeeeecccccccccccccccccccccc
Confidence 46789999999999999999999999999999999999997531 0111
Q ss_pred --cCCCHHHHHHHHH---hhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCCC-CCCCCcchhhHHHHHHHHHHHHHHH
Q 010380 289 --LQFTNEEIEQIVS---TNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGG-SSTPLTAVYGSTKCGLRQLQASLFK 362 (512)
Q Consensus 289 --~~~s~e~~~~~~~---vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~~-~~~p~~~~Y~aSKaAl~~l~~sLa~ 362 (512)
...+.++++.+.. ...+..+...+...++|. .++++|.+|+.++.. .|.+..+.++++|++|+..++.|+.
T Consensus 189 ~l~pat~eeie~T~~vMg~s~~s~w~~al~~a~lla---~G~siva~SYiGse~t~P~Y~~G~mG~AKaaLEa~~r~La~ 265 (401)
T 4ggo_A 189 SAEPANDEEAAATVKVMGGEDWERWIKQLSKEGLLE---EGCITLAYSYIGPEATQALYRKGTIGKAKEHLEATAHRLNK 265 (401)
T ss_dssp EECCCCHHHHHHHHHHHSSHHHHHHHHHHHHTTCEE---EEEEEEEEECCCCGGGHHHHTTSHHHHHHHHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHhhhHHHHHHHHHHhhhccc---CCceEEEEeccCcceeecCCCccHHHHHHHHHHHHHHHHHH
Confidence 1234555555544 455556666666667675 368999999884321 2333446889999999999999999
Q ss_pred HhCCCCeEEEEEeCCcccCCccc
Q 010380 363 ESKRSKVGVHTASPGMVLTDLLL 385 (512)
Q Consensus 363 El~~~GIrVn~V~PG~V~T~~~~ 385 (512)
|+++ +++|+++||.+.|.-..
T Consensus 266 eL~~--~~a~v~v~~a~vT~Ass 286 (401)
T 4ggo_A 266 ENPS--IRAFVSVNKGLVTRASA 286 (401)
T ss_dssp HCTT--EEEEEEECCCCCCTTGG
T ss_pred hcCC--CcEEEEEcCccccchhh
Confidence 9984 89999999999998653
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.5e-19 Score=183.73 Aligned_cols=175 Identities=19% Similarity=0.119 Sum_probs=137.6
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCCh
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEP 255 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~ 255 (512)
.+++||||||+|+||++++++|+++|++|++++|+.+...+..+++.+. .+.++.++.+|++|+
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~----------------~~~~~~~~~~Dl~d~ 67 (341)
T 3enk_A 4 TKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKI----------------TGKTPAFHETDVSDE 67 (341)
T ss_dssp SSCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSSCTHHHHHHHHH----------------HSCCCEEECCCTTCH
T ss_pred CCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCcchHHHHHHHHhh----------------cCCCceEEEeecCCH
Confidence 5689999999999999999999999999999999877766666655442 235688899999999
Q ss_pred hhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCC
Q 010380 256 ADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGS 335 (512)
Q Consensus 256 ~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a 335 (512)
++++++++. +++|+||||||... .. ...+..+..+++|+.+++++++++ ++. +.++||++||...
T Consensus 68 ~~~~~~~~~-----~~~d~vih~A~~~~-~~----~~~~~~~~~~~~n~~~~~~l~~~~----~~~-~~~~iv~~SS~~~ 132 (341)
T 3enk_A 68 RALARIFDA-----HPITAAIHFAALKA-VG----ESVAKPIEYYRNNLDSLLSLLRVM----RER-AVKRIVFSSSATV 132 (341)
T ss_dssp HHHHHHHHH-----SCCCEEEECCCCCC-HH----HHHHCHHHHHHHHHHHHHHHHHHH----HHT-TCCEEEEEEEGGG
T ss_pred HHHHHHHhc-----cCCcEEEECccccc-cC----ccccChHHHHHHHHHHHHHHHHHH----HhC-CCCEEEEEecceE
Confidence 999998875 47999999999754 11 123445678899999998886654 444 4579999998632
Q ss_pred CC----------CCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCc
Q 010380 336 GG----------SSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDL 383 (512)
Q Consensus 336 ~~----------~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~ 383 (512)
.. .+......|+.||++.+.+++.++.++. |++++++.||.|-.|.
T Consensus 133 ~g~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~--~~~~~~lRp~~v~G~~ 188 (341)
T 3enk_A 133 YGVPERSPIDETFPLSATNPYGQTKLMAEQILRDVEAADP--SWRVATLRYFNPVGAH 188 (341)
T ss_dssp BCSCSSSSBCTTSCCBCSSHHHHHHHHHHHHHHHHHHHCT--TCEEEEEEECEEECCC
T ss_pred ecCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcCC--CceEEEEeeccccCCc
Confidence 11 1222346899999999999999999874 6999999999987763
|
| >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-19 Score=184.11 Aligned_cols=178 Identities=16% Similarity=0.076 Sum_probs=137.4
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCC
Q 010380 175 AGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCE 254 (512)
Q Consensus 175 l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd 254 (512)
+++|+|+||||+|+||.+++++|+++|++|++++|+.+..+. +.+.+. . ...++.++.+|++|
T Consensus 1 m~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~--~~~~~~-~--------------~~~~~~~~~~Dl~d 63 (345)
T 2z1m_A 1 MSGKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGEFAS--WRLKEL-G--------------IENDVKIIHMDLLE 63 (345)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCCSTTTT--HHHHHT-T--------------CTTTEEECCCCTTC
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCccccc--ccHhhc-c--------------ccCceeEEECCCCC
Confidence 357899999999999999999999999999999998765321 122210 0 12368889999999
Q ss_pred hhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCC
Q 010380 255 PADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAG 334 (512)
Q Consensus 255 ~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~ 334 (512)
++++.++++.+ ++|+||||||... .+.+.++++..+++|+.+++++++++.+. . ..++||++||..
T Consensus 64 ~~~~~~~~~~~-----~~d~vih~A~~~~-----~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~-~---~~~~iv~~SS~~ 129 (345)
T 2z1m_A 64 FSNIIRTIEKV-----QPDEVYNLAAQSF-----VGVSFEQPILTAEVDAIGVLRILEALRTV-K---PDTKFYQASTSE 129 (345)
T ss_dssp HHHHHHHHHHH-----CCSEEEECCCCCC-----HHHHTTSHHHHHHHHTHHHHHHHHHHHHH-C---TTCEEEEEEEGG
T ss_pred HHHHHHHHHhc-----CCCEEEECCCCcc-----hhhhhhCHHHHHHHHHHHHHHHHHHHHHh-C---CCceEEEEechh
Confidence 99999988765 7999999999743 12234568899999999999999998853 1 137999999862
Q ss_pred CC----------CCCCCCcchhhHHHHHHHHHHHHHHHHhC---CCCeEEEEEeCCcccCCc
Q 010380 335 SG----------GSSTPLTAVYGSTKCGLRQLQASLFKESK---RSKVGVHTASPGMVLTDL 383 (512)
Q Consensus 335 a~----------~~~~p~~~~Y~aSKaAl~~l~~sLa~El~---~~GIrVn~V~PG~V~T~~ 383 (512)
.. ..+.++...|++||++.+.+++.++.++. ..++.++.+.||.+.|++
T Consensus 130 vyg~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~r~~~~~gpg~~~~~~ 191 (345)
T 2z1m_A 130 MFGKVQEIPQTEKTPFYPRSPYAVAKLFGHWITVNYREAYNMFACSGILFNHESPLRGIEFV 191 (345)
T ss_dssp GGCSCSSSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSH
T ss_pred hcCCCCCCCCCccCCCCCCChhHHHHHHHHHHHHHHHHHhCCceEeeeeeeecCCCCCCcch
Confidence 11 12344567899999999999999999986 345677889999888875
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.5e-19 Score=185.20 Aligned_cols=178 Identities=16% Similarity=0.058 Sum_probs=141.3
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCC
Q 010380 175 AGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCE 254 (512)
Q Consensus 175 l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd 254 (512)
+++++|+||||+|+||.+++++|+++|++|++++|+.++.....+.+. .+.++.++.+|++|
T Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~------------------~~~~~~~~~~Dl~d 68 (357)
T 1rkx_A 7 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETAR------------------VADGMQSEIGDIRD 68 (357)
T ss_dssp HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTT------------------TTTTSEEEECCTTC
T ss_pred hCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEeCCCcccchhhHhhc------------------cCCceEEEEccccC
Confidence 467899999999999999999999999999999998765433322221 12467889999999
Q ss_pred hhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCC
Q 010380 255 PADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAG 334 (512)
Q Consensus 255 ~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~ 334 (512)
++++.++++.+ ++|+||||||... .+.+.++++..+++|+.++.++++++.+. +..++||++||..
T Consensus 69 ~~~~~~~~~~~-----~~d~vih~A~~~~-----~~~~~~~~~~~~~~n~~~~~~l~~a~~~~----~~~~~~v~~SS~~ 134 (357)
T 1rkx_A 69 QNKLLESIREF-----QPEIVFHMAAQPL-----VRLSYSEPVETYSTNVMGTVYLLEAIRHV----GGVKAVVNITSDK 134 (357)
T ss_dssp HHHHHHHHHHH-----CCSEEEECCSCCC-----HHHHHHCHHHHHHHHTHHHHHHHHHHHHH----CCCCEEEEECCGG
T ss_pred HHHHHHHHHhc-----CCCEEEECCCCcc-----cccchhCHHHHHHHHHHHHHHHHHHHHHh----CCCCeEEEecCHH
Confidence 99999888765 7999999999632 22345678899999999999999998763 1257999999863
Q ss_pred CC--------CC---CCCCcchhhHHHHHHHHHHHHHHHHhC------CCCeEEEEEeCCcccCCcc
Q 010380 335 SG--------GS---STPLTAVYGSTKCGLRQLQASLFKESK------RSKVGVHTASPGMVLTDLL 384 (512)
Q Consensus 335 a~--------~~---~~p~~~~Y~aSKaAl~~l~~sLa~El~------~~GIrVn~V~PG~V~T~~~ 384 (512)
.. .. +.+....|+.||.+.+.+++.++.++. +.|++++++.||.|.+|..
T Consensus 135 vyg~~~~~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~gi~~~~lrp~~v~G~~~ 201 (357)
T 1rkx_A 135 CYDNKEWIWGYRENEAMGGYDPYSNSKGCAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGGD 201 (357)
T ss_dssp GBCCCCSSSCBCTTSCBCCSSHHHHHHHHHHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTTC
T ss_pred HhCCCCcCCCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHhhhhccccCCceEEEEeeceeeCCCC
Confidence 11 01 233567899999999999999999985 4489999999999998753
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.80 E-value=5.8e-19 Score=179.38 Aligned_cols=172 Identities=16% Similarity=0.093 Sum_probs=136.2
Q ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEEcCh-hhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChh
Q 010380 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSS-ESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPA 256 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~-~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~ 256 (512)
++||||||+|+||.+++++|+++|++|++++|+. .......+.+.. ..++.++.+|++|++
T Consensus 2 ~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~l~~------------------~~~~~~~~~Dl~d~~ 63 (347)
T 1orr_A 2 AKLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSS------------------LGNFEFVHGDIRNKN 63 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHHT------------------TCCCEEEECCTTCHH
T ss_pred cEEEEeCCCchhHHHHHHHHHhCCCEEEEEeCCCccCchhhhhhhcc------------------CCceEEEEcCCCCHH
Confidence 5799999999999999999999999999999853 222222333321 135788999999999
Q ss_pred hHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCC
Q 010380 257 DVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSG 336 (512)
Q Consensus 257 sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~ 336 (512)
+++++++.. ++|+||||||... .+.+.++++..+++|+.++.++++++.+.+. .++||++||....
T Consensus 64 ~~~~~~~~~-----~~d~vih~A~~~~-----~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~----~~~iv~~SS~~v~ 129 (347)
T 1orr_A 64 DVTRLITKY-----MPDSCFHLAGQVA-----MTTSIDNPCMDFEINVGGTLNLLEAVRQYNS----NCNIIYSSTNKVY 129 (347)
T ss_dssp HHHHHHHHH-----CCSEEEECCCCCC-----HHHHHHCHHHHHHHHHHHHHHHHHHHHHHCT----TCEEEEEEEGGGG
T ss_pred HHHHHHhcc-----CCCEEEECCcccC-----hhhhhhCHHHHHHHHHHHHHHHHHHHHHhCC----CceEEEeccHHHh
Confidence 999888752 7999999999743 1233457789999999999999999988753 2589999986321
Q ss_pred C--------------------------CCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcc
Q 010380 337 G--------------------------SSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLL 384 (512)
Q Consensus 337 ~--------------------------~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~ 384 (512)
. .+.+....|+.||++.+.+++.++.++ |++++++.||.|.++..
T Consensus 130 g~~~~~~~~e~~~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilrp~~v~g~~~ 200 (347)
T 1orr_A 130 GDLEQYKYNETETRYTCVDKPNGYDESTQLDFHSPYGCSKGAADQYMLDYARIF---GLNTVVFRHSSMYGGRQ 200 (347)
T ss_dssp TTCTTSCEEECSSCEEETTCTTCBCTTSCCCCCHHHHHHHHHHHHHHHHHHHHH---CCEEEEEEECCEECTTC
T ss_pred CCCCcCCcccccccccccccccCccccCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEccCceeCcCC
Confidence 1 122356789999999999999999987 79999999999999875
|
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.7e-18 Score=175.96 Aligned_cols=176 Identities=14% Similarity=0.161 Sum_probs=128.8
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCC
Q 010380 175 AGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCE 254 (512)
Q Consensus 175 l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd 254 (512)
.++|+||||||+|+||.+++++|+++|++|+++.|+.+..+... .+.+ ... ...++.++.+|++|
T Consensus 3 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~-~~~~-~~~-------------~~~~~~~~~~Dl~d 67 (337)
T 2c29_D 3 SQSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVK-HLLD-LPK-------------AETHLTLWKADLAD 67 (337)
T ss_dssp ---CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCTTCHHHHH-HHHT-STT-------------HHHHEEEEECCTTS
T ss_pred CCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEECCcchhHHHH-HHHh-ccc-------------CCCeEEEEEcCCCC
Confidence 46789999999999999999999999999999999876543221 1111 000 01357889999999
Q ss_pred hhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCC
Q 010380 255 PADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAG 334 (512)
Q Consensus 255 ~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~ 334 (512)
.++++++++ .+|+|||+|+... ... .+..+..+++|+.|+.++++++.+.. ..++||++||..
T Consensus 68 ~~~~~~~~~-------~~d~Vih~A~~~~----~~~--~~~~~~~~~~nv~gt~~ll~a~~~~~----~~~riV~~SS~~ 130 (337)
T 2c29_D 68 EGSFDEAIK-------GCTGVFHVATPMD----FES--KDPENEVIKPTIEGMLGIMKSCAAAK----TVRRLVFTSSAG 130 (337)
T ss_dssp TTTTHHHHT-------TCSEEEECCCCCC----SSC--SSHHHHTHHHHHHHHHHHHHHHHHHS----CCCEEEEECCGG
T ss_pred HHHHHHHHc-------CCCEEEEeccccC----CCC--CChHHHHHHHHHHHHHHHHHHHHhCC----CccEEEEeeeHh
Confidence 998887764 5899999998532 111 22345789999999999999987653 246899999873
Q ss_pred CCCC-CC--------------------CCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCccc
Q 010380 335 SGGS-ST--------------------PLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLL 385 (512)
Q Consensus 335 a~~~-~~--------------------p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~ 385 (512)
+... +. +....|++||.+.+.++..++.+. |+++++++||.|.+|...
T Consensus 131 ~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gi~~~~lrp~~v~Gp~~~ 199 (337)
T 2c29_D 131 TVNIQEHQLPVYDESCWSDMEFCRAKKMTAWMYFVSKTLAEQAAWKYAKEN---NIDFITIIPTLVVGPFIM 199 (337)
T ss_dssp GTSCSSSCCSEECTTCCCCHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHHH---TCCEEEEEECEEESCCSC
T ss_pred hcccCCCCCcccCcccCCchhhhcccCCccchHHHHHHHHHHHHHHHHHHc---CCcEEEEeCCceECCCCC
Confidence 1111 00 123469999999999988877654 799999999999998643
|
| >2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.2e-18 Score=175.54 Aligned_cols=167 Identities=18% Similarity=0.150 Sum_probs=133.5
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
..+.++||||||+|+||.+++++|+++|++|++++|+.+. +. .++.++.+|++
T Consensus 9 ~~~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~-~~--------------------------l~~~~~~~Dl~ 61 (321)
T 2pk3_A 9 HHGSMRALITGVAGFVGKYLANHLTEQNVEVFGTSRNNEA-KL--------------------------PNVEMISLDIM 61 (321)
T ss_dssp ----CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCTTC-CC--------------------------TTEEEEECCTT
T ss_pred ccCcceEEEECCCChHHHHHHHHHHHCCCEEEEEecCCcc-cc--------------------------ceeeEEECCCC
Confidence 3456899999999999999999999999999999998653 10 04678899999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
|+++++++++. +++|+||||||.... +.+.++++..+++|+.|+.++++++ +.+. +.++||++||.
T Consensus 62 d~~~~~~~~~~-----~~~d~vih~A~~~~~-----~~~~~~~~~~~~~Nv~g~~~l~~a~-~~~~---~~~~iv~~SS~ 127 (321)
T 2pk3_A 62 DSQRVKKVISD-----IKPDYIFHLAAKSSV-----KDSWLNKKGTFSTNVFGTLHVLDAV-RDSN---LDCRILTIGSS 127 (321)
T ss_dssp CHHHHHHHHHH-----HCCSEEEECCSCCCH-----HHHTTCHHHHHHHHHHHHHHHHHHH-HHHT---CCCEEEEEEEG
T ss_pred CHHHHHHHHHh-----cCCCEEEEcCcccch-----hhhhhcHHHHHHHHHHHHHHHHHHH-HHhC---CCCeEEEEccH
Confidence 99999988765 379999999997531 1233467899999999999999998 5552 35799999987
Q ss_pred CCCCC-------------CCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCccc
Q 010380 334 GSGGS-------------STPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLL 385 (512)
Q Consensus 334 ~a~~~-------------~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~ 385 (512)
. ... +.+....|+.||++.+.+++.++.++ |++++++.||.|.+|...
T Consensus 128 ~-v~g~~~~~~~~~~E~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilrp~~v~g~~~~ 188 (321)
T 2pk3_A 128 E-EYGMILPEESPVSEENQLRPMSPYGVSKASVGMLARQYVKAY---GMDIIHTRTFNHIGPGQS 188 (321)
T ss_dssp G-GTBSCCGGGCSBCTTSCCBCCSHHHHHHHHHHHHHHHHHHHH---CCEEEEEEECEEECTTCC
T ss_pred H-hcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHc---CCCEEEEEeCcccCcCCC
Confidence 3 222 12456789999999999999999886 799999999999998754
|
| >1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=4.9e-18 Score=176.53 Aligned_cols=182 Identities=12% Similarity=0.065 Sum_probs=136.1
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHH----------------HHHHHHHHHhhhhhhcCCCC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRM----------------TVTELEENLKEGMMAAGGSS 236 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~----------------~~~el~~~~~~~~~~~g~~~ 236 (512)
.-.++.+||||||+|.||.+++++|+++|++|++++|+...... ...++.+.
T Consensus 7 ~~~~~~~vlVTG~tGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------------ 74 (404)
T 1i24_A 7 HHHHGSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKAL------------ 74 (404)
T ss_dssp -----CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHH------------
T ss_pred cccCCCeEEEeCCCcHHHHHHHHHHHhCCCeEEEEEecCccccccccccccccccchhhhhhhhHhhc------------
Confidence 34567899999999999999999999999999999987543211 11111110
Q ss_pred cccccCceEEEEEccCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHH
Q 010380 237 KKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMR 316 (512)
Q Consensus 237 ~~~~~g~~v~~v~~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp 316 (512)
.+.++.++.+|++|++++.++++.. ++|+||||||... ......++++++..+++|+.|+.++++++.+
T Consensus 75 ----~~~~v~~~~~Dl~d~~~~~~~~~~~-----~~D~Vih~A~~~~--~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~ 143 (404)
T 1i24_A 75 ----TGKSIELYVGDICDFEFLAESFKSF-----EPDSVVHFGEQRS--APYSMIDRSRAVYTQHNNVIGTLNVLFAIKE 143 (404)
T ss_dssp ----HCCCCEEEESCTTSHHHHHHHHHHH-----CCSEEEECCSCCC--HHHHTSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----cCCceEEEECCCCCHHHHHHHHhcc-----CCCEEEECCCCCC--ccchhhCccchhhhHHHHHHHHHHHHHHHHH
Confidence 1346788999999999998887764 6999999999753 1122236677888999999999999998865
Q ss_pred HHHhCCCCCeEEeecCCCCCC-----------------------CCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEE
Q 010380 317 VMRDQPKGGHIFNMDGAGSGG-----------------------SSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHT 373 (512)
Q Consensus 317 ~m~~~~~~g~IV~vSS~~a~~-----------------------~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~ 373 (512)
.- .+.+||++||..... .+......|+.||++.+.+++.++.++ |+++++
T Consensus 144 ~~----~~~~~V~~SS~~vyg~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~i 216 (404)
T 1i24_A 144 FG----EECHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATD 216 (404)
T ss_dssp HC----TTCEEEEECCGGGGCCCSSCBCSSEEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHH---CCEEEE
T ss_pred hC----CCcEEEEeCcHHHhCCCCCCCCccccccccccccccccCCCCCCChhHHHHHHHHHHHHHHHHhc---CCeEEE
Confidence 41 124899999863211 123345689999999999999999887 799999
Q ss_pred EeCCcccCCcc
Q 010380 374 ASPGMVLTDLL 384 (512)
Q Consensus 374 V~PG~V~T~~~ 384 (512)
|.||.|.+|..
T Consensus 217 vrp~~v~Gp~~ 227 (404)
T 1i24_A 217 LNQGVVYGVKT 227 (404)
T ss_dssp EEECEEECSCC
T ss_pred EecceeeCCCC
Confidence 99999988753
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=5.7e-19 Score=179.46 Aligned_cols=171 Identities=16% Similarity=0.174 Sum_probs=130.2
Q ss_pred cccCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEE
Q 010380 170 EEHCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIA 249 (512)
Q Consensus 170 ~~~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~ 249 (512)
....++++++||||||+|+||.+++++|+++|++|++++|+.+...+..+ .-.++.++.
T Consensus 13 ~~~~~~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~---------------------~l~~v~~~~ 71 (330)
T 2pzm_A 13 GLVPRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLP---------------------PVAGLSVIE 71 (330)
T ss_dssp -CCSTTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSSCGGGSC---------------------SCTTEEEEE
T ss_pred CCcccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCccchhhhh---------------------ccCCceEEE
Confidence 44567889999999999999999999999999999999997543211000 013578899
Q ss_pred ccCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEe
Q 010380 250 CDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFN 329 (512)
Q Consensus 250 ~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~ 329 (512)
+|++|.++++++++++ ++|+||||||.... . +.++++ +++|+.+++++++++... +.++||+
T Consensus 72 ~Dl~d~~~~~~~~~~~-----~~D~vih~A~~~~~-~-----~~~~~~--~~~N~~~~~~l~~a~~~~-----~~~~iV~ 133 (330)
T 2pzm_A 72 GSVTDAGLLERAFDSF-----KPTHVVHSAAAYKD-P-----DDWAED--AATNVQGSINVAKAASKA-----GVKRLLN 133 (330)
T ss_dssp CCTTCHHHHHHHHHHH-----CCSEEEECCCCCSC-T-----TCHHHH--HHHHTHHHHHHHHHHHHH-----TCSEEEE
T ss_pred eeCCCHHHHHHHHhhc-----CCCEEEECCccCCC-c-----cccChh--HHHHHHHHHHHHHHHHHc-----CCCEEEE
Confidence 9999999999888765 79999999997641 1 445666 999999999999998742 3579999
Q ss_pred ecCCCCCCCCC-----C------CcchhhHHHHHHHHHHHHHHHHhCCCCeE-EEEEeCCcccCCc
Q 010380 330 MDGAGSGGSST-----P------LTAVYGSTKCGLRQLQASLFKESKRSKVG-VHTASPGMVLTDL 383 (512)
Q Consensus 330 vSS~~a~~~~~-----p------~~~~Y~aSKaAl~~l~~sLa~El~~~GIr-Vn~V~PG~V~T~~ 383 (512)
+||.. ..... + ....|++||++++.+++.+ ++....|| ++.+.||. .|++
T Consensus 134 ~SS~~-~~~~~~~~~~~~~E~~~~~~~Y~~sK~~~e~~~~~~--~~~~~~iR~~~v~gp~~-~~~~ 195 (330)
T 2pzm_A 134 FQTAL-CYGRPATVPIPIDSPTAPFTSYGISKTAGEAFLMMS--DVPVVSLRLANVTGPRL-AIGP 195 (330)
T ss_dssp EEEGG-GGCSCSSSSBCTTCCCCCCSHHHHHHHHHHHHHHTC--SSCEEEEEECEEECTTC-CSSH
T ss_pred ecCHH-HhCCCccCCCCcCCCCCCCChHHHHHHHHHHHHHHc--CCCEEEEeeeeeECcCC-CCCH
Confidence 99873 33222 2 5678999999999999887 44445567 67777775 4443
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-18 Score=168.74 Aligned_cols=166 Identities=16% Similarity=0.083 Sum_probs=125.2
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHHC--CCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 175 AGPRNVVITGSTRGLGKALAREFLLS--GDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 175 l~gk~vLVTGassGIG~aiA~~La~~--Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
+.+|+++||||+|+||++++++|+++ |++|++++|+++++++. +.++.++.+|+
T Consensus 2 ~~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~------------------------~~~~~~~~~D~ 57 (253)
T 1xq6_A 2 ANLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKI------------------------GGEADVFIGDI 57 (253)
T ss_dssp CSCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHHT------------------------TCCTTEEECCT
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhhc------------------------CCCeeEEEecC
Confidence 45789999999999999999999999 89999999997654321 13456789999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCC--------CcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKP--------LLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKG 324 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~--------~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~ 324 (512)
+|+++++++++ .+|+||||||....... ..+.+.+++++.+++|+.++.++++++... +.
T Consensus 58 ~d~~~~~~~~~-------~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-----~~ 125 (253)
T 1xq6_A 58 TDADSINPAFQ-------GIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVA-----GV 125 (253)
T ss_dssp TSHHHHHHHHT-------TCSEEEECCCCCCEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHHH-----TC
T ss_pred CCHHHHHHHHc-------CCCEEEEeccccccccccccccccccchhhccccccceeeeHHHHHHHHHHHHHc-----CC
Confidence 99998888764 58999999997531110 012223445678899999999988877543 34
Q ss_pred CeEEeecCCCCCCCCCCCcc-----hhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcc
Q 010380 325 GHIFNMDGAGSGGSSTPLTA-----VYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLL 384 (512)
Q Consensus 325 g~IV~vSS~~a~~~~~p~~~-----~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~ 384 (512)
++||++||.. ...+.+... .|+.+|.+++.+.+. .|+++++++||++.++..
T Consensus 126 ~~iv~~SS~~-~~~~~~~~~~~~~~~y~~sK~~~e~~~~~-------~~i~~~~vrpg~v~~~~~ 182 (253)
T 1xq6_A 126 KHIVVVGSMG-GTNPDHPLNKLGNGNILVWKRKAEQYLAD-------SGTPYTIIRAGGLLDKEG 182 (253)
T ss_dssp SEEEEEEETT-TTCTTCGGGGGGGCCHHHHHHHHHHHHHT-------SSSCEEEEEECEEECSCS
T ss_pred CEEEEEcCcc-CCCCCCccccccchhHHHHHHHHHHHHHh-------CCCceEEEecceeecCCc
Confidence 6999999873 333333333 366699999988753 589999999999999864
|
| >1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=5.4e-18 Score=175.95 Aligned_cols=177 Identities=13% Similarity=0.039 Sum_probs=133.0
Q ss_pred CCEEEEECCCChHHHHHHHHHH-HCCCEEEEEEcChhh---------HHHHHHHHHHHHhhhhhhcCCCCcccccCce--
Q 010380 177 PRNVVITGSTRGLGKALAREFL-LSGDRVVVASRSSES---------VRMTVTELEENLKEGMMAAGGSSKKNLVHAK-- 244 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La-~~Ga~Vvl~~R~~~~---------l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~-- 244 (512)
+++||||||+|+||.+++++|+ ++|++|++++|+... .+.+.+.+.+... .....+
T Consensus 2 ~m~vlVTGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~ 69 (397)
T 1gy8_A 2 HMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDG------------PKPPWADR 69 (397)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCS------------SCCTTTTC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHhCCCEEEEEecCCcccccccccchHHHHHHHHHHhhc------------cccccCCc
Confidence 3579999999999999999999 999999999997654 3333222222100 000113
Q ss_pred -EEEEEccCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCC
Q 010380 245 -VAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPK 323 (512)
Q Consensus 245 -v~~v~~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~ 323 (512)
+.++.+|++|++++++++++ ++++|+||||||... .. .+.++++..+++|+.+++++++++.. . +
T Consensus 70 ~~~~~~~Dl~d~~~~~~~~~~----~~~~d~vih~A~~~~-~~----~~~~~~~~~~~~Nv~g~~~ll~a~~~----~-~ 135 (397)
T 1gy8_A 70 YAALEVGDVRNEDFLNGVFTR----HGPIDAVVHMCAFLA-VG----ESVRDPLKYYDNNVVGILRLLQAMLL----H-K 135 (397)
T ss_dssp CCEEEESCTTCHHHHHHHHHH----SCCCCEEEECCCCCC-HH----HHHHCHHHHHHHHHHHHHHHHHHHHH----T-T
T ss_pred eEEEEECCCCCHHHHHHHHHh----cCCCCEEEECCCccC-cC----cchhhHHHHHHHHhHHHHHHHHHHHH----h-C
Confidence 78899999999998877653 566999999999753 11 13467789999999999999987643 3 4
Q ss_pred CCeEEeecCCCCCCCCC------------------CCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCc
Q 010380 324 GGHIFNMDGAGSGGSST------------------PLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDL 383 (512)
Q Consensus 324 ~g~IV~vSS~~a~~~~~------------------p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~ 383 (512)
.++||++||.. ..... .....|++||++.+.+++.++.++ |++++++.||.|-.+.
T Consensus 136 ~~~iv~~SS~~-v~g~~~~~~~~~~~~~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~~~---gi~~~ilRp~~v~G~~ 209 (397)
T 1gy8_A 136 CDKIIFSSSAA-IFGNPTMGSVSTNAEPIDINAKKSPESPYGESKLIAERMIRDCAEAY---GIKGICLRYFNACGAH 209 (397)
T ss_dssp CCEEEEEEEGG-GTBSCCC-----CCCCBCTTSCCBCSSHHHHHHHHHHHHHHHHHHHH---CCEEEEEEECEEECCC
T ss_pred CCEEEEECCHH-HhCCCCcccccccccCcCccCCCCCCCchHHHHHHHHHHHHHHHHHH---CCcEEEEeccceeCCC
Confidence 57999999863 22111 125789999999999999999988 7999999999997663
|
| >2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.77 E-value=8.1e-19 Score=177.93 Aligned_cols=171 Identities=13% Similarity=0.108 Sum_probs=133.0
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCC--CEEEEEEcChh--hHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEcc
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSG--DRVVVASRSSE--SVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACD 251 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~G--a~Vvl~~R~~~--~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~D 251 (512)
++++||||||+|+||.+++++|+++| ++|++++|+.. ..+.+ +++. .+.++.++.+|
T Consensus 2 ~~m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~-~~~~------------------~~~~~~~~~~D 62 (336)
T 2hun_A 2 HSMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANL-KDLE------------------DDPRYTFVKGD 62 (336)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGG-TTTT------------------TCTTEEEEECC
T ss_pred CCCeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecCcccCchhHH-hhhc------------------cCCceEEEEcC
Confidence 35679999999999999999999997 89999998742 11110 0100 13468889999
Q ss_pred CCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeec
Q 010380 252 VCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD 331 (512)
Q Consensus 252 ltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vS 331 (512)
++|.+++++++ +++|+||||||... .+.+.++++..+++|+.++.++++++.+. . ..++||++|
T Consensus 63 l~d~~~~~~~~-------~~~d~vih~A~~~~-----~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~--~--~~~~iv~~S 126 (336)
T 2hun_A 63 VADYELVKELV-------RKVDGVVHLAAESH-----VDRSISSPEIFLHSNVIGTYTLLESIRRE--N--PEVRFVHVS 126 (336)
T ss_dssp TTCHHHHHHHH-------HTCSEEEECCCCCC-----HHHHHHCTHHHHHHHHHHHHHHHHHHHHH--C--TTSEEEEEE
T ss_pred CCCHHHHHHHh-------hCCCEEEECCCCcC-----hhhhhhCHHHHHHHHHHHHHHHHHHHHHh--C--CCcEEEEec
Confidence 99999888876 37999999999743 12344567889999999999999999876 1 246999999
Q ss_pred CCCC-CCC---------CCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcc
Q 010380 332 GAGS-GGS---------STPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLL 384 (512)
Q Consensus 332 S~~a-~~~---------~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~ 384 (512)
|... +.. +.+....|+.||++.+.+++.++.++ |+++++++||.|.+|..
T Consensus 127 S~~vyg~~~~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~ilrp~~v~g~~~ 186 (336)
T 2hun_A 127 TDEVYGDILKGSFTENDRLMPSSPYSATKAASDMLVLGWTRTY---NLNASITRCTNNYGPYQ 186 (336)
T ss_dssp EGGGGCCCSSSCBCTTBCCCCCSHHHHHHHHHHHHHHHHHHHT---TCEEEEEEECEEESTTC
T ss_pred cHHHHCCCCCCCcCCCCCCCCCCccHHHHHHHHHHHHHHHHHh---CCCEEEEeeeeeeCcCC
Confidence 8631 111 33456789999999999999999886 79999999999999875
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.5e-18 Score=177.70 Aligned_cols=179 Identities=15% Similarity=0.037 Sum_probs=136.6
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
++.+++|+||||+|+||.+++++|+++|++|++++|+.....+..+++.+.... ..+.++.++.+|++
T Consensus 24 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~Dl~ 91 (352)
T 1sb8_A 24 PAQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSE------------KQWSNFKFIQGDIR 91 (352)
T ss_dssp HHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCH------------HHHTTEEEEECCTT
T ss_pred CccCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCccchhhHHHHhhhccc------------ccCCceEEEECCCC
Confidence 456789999999999999999999999999999999764222222222221100 01246888999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
|.++++++++ ++|+||||||.... ..+.++++..+++|+.++.++++++.+. +.++||++||.
T Consensus 92 d~~~~~~~~~-------~~d~vih~A~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~a~~~~-----~~~~~v~~SS~ 154 (352)
T 1sb8_A 92 NLDDCNNACA-------GVDYVLHQAALGSV-----PRSINDPITSNATNIDGFLNMLIAARDA-----KVQSFTYAASS 154 (352)
T ss_dssp SHHHHHHHHT-------TCSEEEECCSCCCH-----HHHHHCHHHHHHHHTHHHHHHHHHHHHT-----TCSEEEEEEEG
T ss_pred CHHHHHHHhc-------CCCEEEECCcccCc-----hhhhhCHHHHHHHHHHHHHHHHHHHHHc-----CCCEEEEeccH
Confidence 9988887765 69999999997431 1234678899999999999999988652 35799999986
Q ss_pred CCCCCCC-----------CCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCccc
Q 010380 334 GSGGSST-----------PLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLL 385 (512)
Q Consensus 334 ~a~~~~~-----------p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~ 385 (512)
. ..... .....|+.+|++.+.+++.++.++ |++++++.||.|.+|...
T Consensus 155 ~-~~~~~~~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~ilRp~~v~G~~~~ 213 (352)
T 1sb8_A 155 S-TYGDHPGLPKVEDTIGKPLSPYAVTKYVNELYADVFSRCY---GFSTIGLRYFNVFGRRQD 213 (352)
T ss_dssp G-GGTTCCCSSBCTTCCCCCCSHHHHHHHHHHHHHHHHHHHH---CCCCEEEEECCEECTTCC
T ss_pred H-hcCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHc---CCCEEEEEECceeCcCCC
Confidence 3 22221 235789999999999999999887 799999999999988653
|
| >1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-18 Score=178.51 Aligned_cols=174 Identities=13% Similarity=0.168 Sum_probs=136.0
Q ss_pred EEEEECCCChHHHHHHHHHHHC-CCEEEEEEcChh--hHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCCh
Q 010380 179 NVVITGSTRGLGKALAREFLLS-GDRVVVASRSSE--SVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEP 255 (512)
Q Consensus 179 ~vLVTGassGIG~aiA~~La~~-Ga~Vvl~~R~~~--~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~ 255 (512)
+||||||+|+||.+++++|+++ |++|++++|+.. ..+.+ +++. .+.++.++.+|++|+
T Consensus 2 kvlVTGasG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~-~~~~------------------~~~~~~~~~~Dl~d~ 62 (361)
T 1kew_A 2 KILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESL-SDIS------------------ESNRYNFEHADICDS 62 (361)
T ss_dssp EEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCCGGGG-TTTT------------------TCTTEEEEECCTTCH
T ss_pred EEEEECCCchHhHHHHHHHHhcCCCeEEEEecCCCCCchhhh-hhhh------------------cCCCeEEEECCCCCH
Confidence 4899999999999999999998 799999998752 11111 1100 134688899999999
Q ss_pred hhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCC----CCCeEEeec
Q 010380 256 ADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQP----KGGHIFNMD 331 (512)
Q Consensus 256 ~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~----~~g~IV~vS 331 (512)
+++.+++++. ++|+||||||... .+.+.+++++.+++|+.+++++++++.+.|..-. ++++||++|
T Consensus 63 ~~~~~~~~~~-----~~d~vih~A~~~~-----~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~v~~~~~~~~~iv~~S 132 (361)
T 1kew_A 63 AEITRIFEQY-----QPDAVMHLAAESH-----VDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHIS 132 (361)
T ss_dssp HHHHHHHHHH-----CCSEEEECCSCCC-----HHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEE
T ss_pred HHHHHHHhhc-----CCCEEEECCCCcC-----hhhhhhCHHHHHHHHHHHHHHHHHHHHHhccCcccccccCceEEEeC
Confidence 9999887752 7999999999743 1234466788999999999999999999885421 135999999
Q ss_pred CCCC-CCC-------------------CCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcc
Q 010380 332 GAGS-GGS-------------------STPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLL 384 (512)
Q Consensus 332 S~~a-~~~-------------------~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~ 384 (512)
|... +.. +.+....|+.||++.+.+++.++.++ |+++++++||.|.+|..
T Consensus 133 S~~v~g~~~~~~~~~~~~~~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~~vrp~~v~G~~~ 202 (361)
T 1kew_A 133 TDEVYGDLPHPDEVENSVTLPLFTETTAYAPSSPYSASKASSDHLVRAWRRTY---GLPTIVTNCSNNYGPYH 202 (361)
T ss_dssp EGGGGCCCCCGGGSCTTSCCCCBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH---CCCEEEEEECEEESTTC
T ss_pred CHHHhCCCcccccccccccCCCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHh---CCcEEEEeeceeECCCC
Confidence 8621 111 23456789999999999999999987 79999999999999875
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} | Back alignment and structure |
|---|
Probab=99.76 E-value=9.3e-19 Score=172.42 Aligned_cols=180 Identities=16% Similarity=0.192 Sum_probs=137.0
Q ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhh
Q 010380 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPAD 257 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~s 257 (512)
|+++||||+|+||.+++++|+++|++|++++|+.++. ...++.++.+|++|+++
T Consensus 3 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~--------------------------~~~~~~~~~~Dl~d~~~ 56 (267)
T 3ay3_A 3 NRLLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLGA--------------------------AEAHEEIVACDLADAQA 56 (267)
T ss_dssp EEEEEESTTSHHHHHHGGGGGGTEEEEEECCSSCCCC--------------------------CCTTEEECCCCTTCHHH
T ss_pred ceEEEECCCCHHHHHHHHHHHhCCCEEEEEeCCCccc--------------------------cCCCccEEEccCCCHHH
Confidence 5799999999999999999999999999999986531 01246788999999998
Q ss_pred HHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCCC
Q 010380 258 VQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGG 337 (512)
Q Consensus 258 v~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~~ 337 (512)
+.++++ .+|+||||||... .+++++.+++|+.++.++++++.+ . +.++||++||.. ..
T Consensus 57 ~~~~~~-------~~d~vi~~a~~~~---------~~~~~~~~~~n~~~~~~l~~a~~~----~-~~~~iv~~SS~~-~~ 114 (267)
T 3ay3_A 57 VHDLVK-------DCDGIIHLGGVSV---------ERPWNDILQANIIGAYNLYEAARN----L-GKPRIVFASSNH-TI 114 (267)
T ss_dssp HHHHHT-------TCSEEEECCSCCS---------CCCHHHHHHHTHHHHHHHHHHHHH----T-TCCEEEEEEEGG-GS
T ss_pred HHHHHc-------CCCEEEECCcCCC---------CCCHHHHHHHHHHHHHHHHHHHHH----h-CCCEEEEeCCHH-Hh
Confidence 887765 5899999999742 234688999999999999998864 2 457999999873 22
Q ss_pred CCCC------------CcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcc-cCCcccCCcchhhhhhhhhhcCCHH
Q 010380 338 SSTP------------LTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMV-LTDLLLSGSTIQNKQMFNIICELPE 404 (512)
Q Consensus 338 ~~~p------------~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V-~T~~~~~~~~~~~~~~~~~~~~~pe 404 (512)
...+ ....|+.||++++.+++.++.+ .|++++++.||.+ .++.. ...... ...++
T Consensus 115 ~~~~~~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~~~~~~-------~~~~~~--~~~~~ 182 (267)
T 3ay3_A 115 GYYPRTTRIDTEVPRRPDSLYGLSKCFGEDLASLYYHK---FDIETLNIRIGSCFPKPKD-------ARMMAT--WLSVD 182 (267)
T ss_dssp TTSBTTSCBCTTSCCCCCSHHHHHHHHHHHHHHHHHHT---TCCCEEEEEECBCSSSCCS-------HHHHHH--BCCHH
T ss_pred CCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---cCCCEEEEeceeecCCCCC-------CCeeec--cccHH
Confidence 2211 3478999999999999988754 4899999999998 45431 111122 23688
Q ss_pred HHHHHhccccccc
Q 010380 405 TVARTLVPRIRVV 417 (512)
Q Consensus 405 ~vA~~~l~r~~~~ 417 (512)
++|+.++..+..+
T Consensus 183 dva~~~~~~~~~~ 195 (267)
T 3ay3_A 183 DFMRLMKRAFVAP 195 (267)
T ss_dssp HHHHHHHHHHHSS
T ss_pred HHHHHHHHHHhCC
Confidence 8888877655443
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.5e-18 Score=165.82 Aligned_cols=149 Identities=18% Similarity=0.224 Sum_probs=121.3
Q ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCC-hhh
Q 010380 179 NVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCE-PAD 257 (512)
Q Consensus 179 ~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd-~~s 257 (512)
+|+||||+|+||++++++|+++|++|++++|+.++++. ..++.++.+|++| +++
T Consensus 2 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~-------------------------~~~~~~~~~D~~d~~~~ 56 (219)
T 3dqp_A 2 KIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQ-------------------------YNNVKAVHFDVDWTPEE 56 (219)
T ss_dssp EEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCC-------------------------CTTEEEEECCTTSCHHH
T ss_pred eEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhh-------------------------cCCceEEEecccCCHHH
Confidence 58999999999999999999999999999999765321 1468889999999 888
Q ss_pred HHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCCC
Q 010380 258 VQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGG 337 (512)
Q Consensus 258 v~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~~ 337 (512)
++++++ .+|+||||||.... ..+++|+.++.++++++. +. +.++||++||. ...
T Consensus 57 ~~~~~~-------~~d~vi~~ag~~~~-------------~~~~~n~~~~~~l~~a~~----~~-~~~~iv~~SS~-~~~ 110 (219)
T 3dqp_A 57 MAKQLH-------GMDAIINVSGSGGK-------------SLLKVDLYGAVKLMQAAE----KA-EVKRFILLSTI-FSL 110 (219)
T ss_dssp HHTTTT-------TCSEEEECCCCTTS-------------SCCCCCCHHHHHHHHHHH----HT-TCCEEEEECCT-TTT
T ss_pred HHHHHc-------CCCEEEECCcCCCC-------------CcEeEeHHHHHHHHHHHH----Hh-CCCEEEEECcc-ccc
Confidence 777654 69999999998541 167889999998888773 33 45699999997 444
Q ss_pred CCCCC-------cchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcc
Q 010380 338 SSTPL-------TAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLL 384 (512)
Q Consensus 338 ~~~p~-------~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~ 384 (512)
.+.+. ...|+.+|.+.+.+.+ ...|+++++++||++.++..
T Consensus 111 ~~~~~~e~~~~~~~~Y~~sK~~~e~~~~------~~~~i~~~ilrp~~v~g~~~ 158 (219)
T 3dqp_A 111 QPEKWIGAGFDALKDYYIAKHFADLYLT------KETNLDYTIIQPGALTEEEA 158 (219)
T ss_dssp CGGGCCSHHHHHTHHHHHHHHHHHHHHH------HSCCCEEEEEEECSEECSCC
T ss_pred CCCcccccccccccHHHHHHHHHHHHHH------hccCCcEEEEeCceEecCCC
Confidence 44455 6789999999998876 35689999999999998754
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.1e-18 Score=167.25 Aligned_cols=177 Identities=11% Similarity=0.083 Sum_probs=120.0
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 175 AGPRNVVITGSTRGLGKALAREFLLSG-DRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 175 l~gk~vLVTGassGIG~aiA~~La~~G-a~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
+..|+|+||||+||||++++++|+++| ++|++++|+++++++. ...++.++.+|++
T Consensus 21 ~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~-----------------------~~~~~~~~~~Dl~ 77 (236)
T 3qvo_A 21 GHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKP-----------------------YPTNSQIIMGDVL 77 (236)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSS-----------------------CCTTEEEEECCTT
T ss_pred CcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhccc-----------------------ccCCcEEEEecCC
Confidence 446899999999999999999999999 8999999997654210 2346888999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
|+++++++++ .+|+||||||... + ...++.+++.|++. +.++||++||.
T Consensus 78 d~~~~~~~~~-------~~D~vv~~a~~~~------------~-----------~~~~~~~~~~~~~~-~~~~iV~iSS~ 126 (236)
T 3qvo_A 78 NHAALKQAMQ-------GQDIVYANLTGED------------L-----------DIQANSVIAAMKAC-DVKRLIFVLSL 126 (236)
T ss_dssp CHHHHHHHHT-------TCSEEEEECCSTT------------H-----------HHHHHHHHHHHHHT-TCCEEEEECCC
T ss_pred CHHHHHHHhc-------CCCEEEEcCCCCc------------h-----------hHHHHHHHHHHHHc-CCCEEEEEecc
Confidence 9999888765 5899999998521 0 13356788888876 56899999997
Q ss_pred CCCCCCCCCc-------------chhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhc
Q 010380 334 GSGGSSTPLT-------------AVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIIC 400 (512)
Q Consensus 334 ~a~~~~~p~~-------------~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~ 400 (512)
. ...+.+.. ..|..+|. ++.+.||++++|+||++.|+...........
T Consensus 127 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~l~~~gi~~~~vrPg~i~~~~~~~~~~~~~~------- 187 (236)
T 3qvo_A 127 G-IYDEVPGKFVEWNNAVIGEPLKPFRRAAD-----------AIEASGLEYTILRPAWLTDEDIIDYELTSRN------- 187 (236)
T ss_dssp C-C----------------CGGGHHHHHHHH-----------HHHTSCSEEEEEEECEEECCSCCCCEEECTT-------
T ss_pred e-ecCCCCcccccchhhcccchHHHHHHHHH-----------HHHHCCCCEEEEeCCcccCCCCcceEEeccC-------
Confidence 3 33333321 22333322 2336799999999999998764321110000
Q ss_pred CCHHHHHHHhccccccchhhhhhhhhcCChH
Q 010380 401 ELPETVARTLVPRIRVVKGSGKAINYLTPPR 431 (512)
Q Consensus 401 ~~pe~vA~~~l~r~~~~~~va~~v~~L~s~~ 431 (512)
. ...+++..++|+++++.+++.+.
T Consensus 188 -~------~~~~~~i~~~DvA~~i~~ll~~~ 211 (236)
T 3qvo_A 188 -E------PFKGTIVSRKSVAALITDIIDKP 211 (236)
T ss_dssp -S------CCSCSEEEHHHHHHHHHHHHHST
T ss_pred -C------CCCCcEECHHHHHHHHHHHHcCc
Confidence 0 01234566777777777777544
|
| >2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.3e-18 Score=175.21 Aligned_cols=176 Identities=14% Similarity=0.137 Sum_probs=135.0
Q ss_pred ccCCCCCCEEEEECCCChHHHHHHHHHHHCC-------CEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCc
Q 010380 171 EHCKAGPRNVVITGSTRGLGKALAREFLLSG-------DRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHA 243 (512)
Q Consensus 171 ~~~~l~gk~vLVTGassGIG~aiA~~La~~G-------a~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~ 243 (512)
+.+.+++++|+||||+|+||.+++++|+++| ++|++++|+.+.... ....
T Consensus 8 ~~~~~~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~~~~~~~-----------------------~~~~ 64 (342)
T 2hrz_A 8 ENLYFQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPA-----------------------GFSG 64 (342)
T ss_dssp CCSCCSCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESSCCCCCT-----------------------TCCS
T ss_pred CCCCccCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEccCCcccc-----------------------ccCC
Confidence 4456789999999999999999999999999 899999998643210 0235
Q ss_pred eEEEEEccCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCC
Q 010380 244 KVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPK 323 (512)
Q Consensus 244 ~v~~v~~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~ 323 (512)
++.++.+|++|+++++++++ +++|+||||||... ..+.+++++.+++|+.|+.++++++.+...+.+.
T Consensus 65 ~~~~~~~Dl~d~~~~~~~~~------~~~d~vih~A~~~~------~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~ 132 (342)
T 2hrz_A 65 AVDARAADLSAPGEAEKLVE------ARPDVIFHLAAIVS------GEAELDFDKGYRINLDGTRYLFDAIRIANGKDGY 132 (342)
T ss_dssp EEEEEECCTTSTTHHHHHHH------TCCSEEEECCCCCH------HHHHHCHHHHHHHHTHHHHHHHHHHHHHHHHHCC
T ss_pred ceeEEEcCCCCHHHHHHHHh------cCCCEEEECCccCc------ccccccHHHHHHHHHHHHHHHHHHHHhcccccCC
Confidence 78889999999999888765 47999999999743 1345678999999999999999998875432212
Q ss_pred CCeEEeecCCCCCCCCC-C----------CcchhhHHHHHHHHHHHHHHHHhC--CCCeEEEEEe--CCcccCC
Q 010380 324 GGHIFNMDGAGSGGSST-P----------LTAVYGSTKCGLRQLQASLFKESK--RSKVGVHTAS--PGMVLTD 382 (512)
Q Consensus 324 ~g~IV~vSS~~a~~~~~-p----------~~~~Y~aSKaAl~~l~~sLa~El~--~~GIrVn~V~--PG~V~T~ 382 (512)
.++||++||.. ..... + +...|++||++.+.+++.++.+.. ...+|++.|. ||.+.++
T Consensus 133 ~~~iv~~SS~~-~~~~~~~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~ir~~~v~g~pg~~~~~ 205 (342)
T 2hrz_A 133 KPRVVFTSSIA-VFGAPLPYPIPDEFHTTPLTSYGTQKAICELLLSDYSRRGFFDGIGIRLPTICIRPGKPNAA 205 (342)
T ss_dssp CCEEEEEEEGG-GCCSSCCSSBCTTCCCCCSSHHHHHHHHHHHHHHHHHHTTSCEEEEEEECEETTCCSSCCCS
T ss_pred CcEEEEeCchH-hhCCCCCCCcCCCCCCCCcchHHHHHHHHHHHHHHHHHhcCCCceeEEeeeEEecCCCCcch
Confidence 46899999873 33221 2 567899999999999999887642 2346777776 8876554
|
| >1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=7.2e-18 Score=171.74 Aligned_cols=173 Identities=17% Similarity=0.103 Sum_probs=131.6
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhh------HHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEc
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSES------VRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIAC 250 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~------l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~ 250 (512)
+|+|+||||+|+||.+++++|+++|++|++++|+... ..+..+++.+. .+.++.++.+
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~r~~~~~~~~~~~l~~~----------------~~~~~~~~~~ 65 (348)
T 1ek6_A 2 AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQEL----------------TGRSVEFEEM 65 (348)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHH----------------HTCCCEEEEC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCcccccccccHHHHHHHHhc----------------cCCceEEEEC
Confidence 4789999999999999999999999999999986432 22233333321 1246788999
Q ss_pred cCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEee
Q 010380 251 DVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNM 330 (512)
Q Consensus 251 Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~v 330 (512)
|++|+++++++++.. ++|+||||||... .. .+.+++++.+++|+.++.++++++. +. +.++||++
T Consensus 66 D~~~~~~~~~~~~~~-----~~d~vih~A~~~~-~~----~~~~~~~~~~~~n~~~~~~l~~~~~----~~-~~~~iv~~ 130 (348)
T 1ek6_A 66 DILDQGALQRLFKKY-----SFMAVIHFAGLKA-VG----ESVQKPLDYYRVNLTGTIQLLEIMK----AH-GVKNLVFS 130 (348)
T ss_dssp CTTCHHHHHHHHHHC-----CEEEEEECCSCCC-HH----HHHHCHHHHHHHHHHHHHHHHHHHH----HT-TCCEEEEE
T ss_pred CCCCHHHHHHHHHhc-----CCCEEEECCCCcC-cc----chhhchHHHHHHHHHHHHHHHHHHH----Hh-CCCEEEEE
Confidence 999999988887652 7999999999753 11 1345678899999999999988653 33 45799999
Q ss_pred cCCCCCCC----------C-CCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCC
Q 010380 331 DGAGSGGS----------S-TPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTD 382 (512)
Q Consensus 331 SS~~a~~~----------~-~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~ 382 (512)
||...... + .|....|+.||++.+.+++.++.+ ..++++.++.|+.|-.+
T Consensus 131 SS~~~~g~~~~~~~~E~~~~~p~~~~Y~~sK~~~e~~~~~~~~~--~~~~~~~~lR~~~v~G~ 191 (348)
T 1ek6_A 131 SSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQA--DKTWNAVLLRYFNPTGA 191 (348)
T ss_dssp EEGGGGCSCSSSSBCTTSCCCCCSSHHHHHHHHHHHHHHHHHHH--CTTCEEEEEEECEEECC
T ss_pred CcHHHhCCCCCCCcCCCCCCCCCCCchHHHHHHHHHHHHHHHhc--CCCcceEEEeeccccCC
Confidence 98632111 1 133678999999999999999988 34699999999888655
|
| >2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.5e-18 Score=174.73 Aligned_cols=172 Identities=16% Similarity=0.133 Sum_probs=120.7
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEEc-ChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCCh
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSGDRVVVASR-SSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEP 255 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R-~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~ 255 (512)
||+||||||+|+||.+++++|+++|++|+++.| +.+..+.. ..+.+ ... ...++.++.+|++|+
T Consensus 1 ~k~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~-~~~~~-~~~-------------~~~~~~~~~~Dl~d~ 65 (322)
T 2p4h_X 1 KGRVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDV-SFLTN-LPG-------------ASEKLHFFNADLSNP 65 (322)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCCC----CCC-HHHHT-STT-------------HHHHEEECCCCTTCG
T ss_pred CCEEEEECChhHHHHHHHHHHHHCCCEEEEEEeCCccchhHH-HHHHh-hhc-------------cCCceEEEecCCCCH
Confidence 588999999999999999999999999999998 65321110 11110 000 113577889999999
Q ss_pred hhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHH-HHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCC
Q 010380 256 ADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEE-IEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAG 334 (512)
Q Consensus 256 ~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~-~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~ 334 (512)
++++++++ .+|+|||||+... .+.++ +++.+++|+.|++++++++.+.+ +.++||++||..
T Consensus 66 ~~~~~~~~-------~~d~vih~A~~~~-------~~~~~~~~~~~~~nv~gt~~l~~aa~~~~----~~~~iV~~SS~~ 127 (322)
T 2p4h_X 66 DSFAAAIE-------GCVGIFHTASPID-------FAVSEPEEIVTKRTVDGALGILKACVNSK----TVKRFIYTSSGS 127 (322)
T ss_dssp GGGHHHHT-------TCSEEEECCCCC---------------CHHHHHHHHHHHHHHHHHTTCS----SCCEEEEEEEGG
T ss_pred HHHHHHHc-------CCCEEEEcCCccc-------CCCCChHHHHHHHHHHHHHHHHHHHHhcC----CccEEEEeccHH
Confidence 99887765 5799999996421 12222 45689999999999999886531 346999999873
Q ss_pred CCCCCCC----------------------CcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCccc
Q 010380 335 SGGSSTP----------------------LTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLL 385 (512)
Q Consensus 335 a~~~~~p----------------------~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~ 385 (512)
...+.+ ....|+.||.+.+.++..++.+ .|+++++++||.|.+|+..
T Consensus 128 -~~~~~~~~~~~~~e~~~~~~~~~~~~~p~~~~Y~~sK~~~e~~~~~~~~~---~gi~~~~lrp~~v~g~~~~ 196 (322)
T 2p4h_X 128 -AVSFNGKDKDVLDESDWSDVDLLRSVKPFGWNYAVSKTLAEKAVLEFGEQ---NGIDVVTLILPFIVGRFVC 196 (322)
T ss_dssp -GTSCSSSCCSEECTTCCCCHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHH---TTCCEEEEEECEEESCCCS
T ss_pred -HcccCCCCCeecCCccccchhhhcccCcccccHHHHHHHHHHHHHHHHHh---cCCcEEEEcCCceECCCCC
Confidence 211110 1116999999888877766654 4899999999999998753
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.7e-17 Score=155.67 Aligned_cols=151 Identities=16% Similarity=0.073 Sum_probs=116.0
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChh
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPA 256 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~ 256 (512)
+++++||||+|+||++++++|+++|++|++++|++++.+.. ...++.++.+|++|++
T Consensus 3 ~~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~-----------------------~~~~~~~~~~D~~~~~ 59 (206)
T 1hdo_A 3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSE-----------------------GPRPAHVVVGDVLQAA 59 (206)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSS-----------------------SCCCSEEEESCTTSHH
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcccc-----------------------cCCceEEEEecCCCHH
Confidence 47899999999999999999999999999999997653210 1346788999999999
Q ss_pred hHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCC
Q 010380 257 DVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSG 336 (512)
Q Consensus 257 sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~ 336 (512)
++.++++ .+|+||||||.... .+ . .++|+.++.++++++... +.++||++||. ..
T Consensus 60 ~~~~~~~-------~~d~vi~~a~~~~~----~~--~------~~~n~~~~~~~~~~~~~~-----~~~~~v~~Ss~-~~ 114 (206)
T 1hdo_A 60 DVDKTVA-------GQDAVIVLLGTRND----LS--P------TTVMSEGARNIVAAMKAH-----GVDKVVACTSA-FL 114 (206)
T ss_dssp HHHHHHT-------TCSEEEECCCCTTC----CS--C------CCHHHHHHHHHHHHHHHH-----TCCEEEEECCG-GG
T ss_pred HHHHHHc-------CCCEEEECccCCCC----CC--c------cchHHHHHHHHHHHHHHh-----CCCeEEEEeee-ee
Confidence 8887664 58999999997542 11 1 137888888877776542 35689999987 33
Q ss_pred CCCCC----CcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcc-cCC
Q 010380 337 GSSTP----LTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMV-LTD 382 (512)
Q Consensus 337 ~~~~p----~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V-~T~ 382 (512)
....+ ....|+.+|.+++.+.+. .|++++++.||.+ .++
T Consensus 115 ~~~~~~~~~~~~~y~~~K~~~e~~~~~-------~~i~~~~lrp~~~~~~~ 158 (206)
T 1hdo_A 115 LWDPTKVPPRLQAVTDDHIRMHKVLRE-------SGLKYVAVMPPHIGDQP 158 (206)
T ss_dssp TSCTTCSCGGGHHHHHHHHHHHHHHHH-------TCSEEEEECCSEEECCC
T ss_pred ccCcccccccchhHHHHHHHHHHHHHh-------CCCCEEEEeCCcccCCC
Confidence 33333 567899999999988742 4899999999998 444
|
| >1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.4e-17 Score=171.05 Aligned_cols=176 Identities=14% Similarity=0.045 Sum_probs=124.9
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHH-HHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCCh
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVR-MTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEP 255 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~-~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~ 255 (512)
+|+|+||||+|+||.+++++|+++|++|++++|+.+... +..+++.+... ..+.++.++.+|++|.
T Consensus 1 m~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~Dl~d~ 67 (372)
T 1db3_A 1 SKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPH-------------TCNPKFHLHYGDLSDT 67 (372)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECC----------------------------------CCEEECCCCSSCH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCcccchHHHHHHhhccc-------------cCCCceEEEECCCCCH
Confidence 378999999999999999999999999999999865421 11112211000 0134688899999999
Q ss_pred hhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCC
Q 010380 256 ADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGS 335 (512)
Q Consensus 256 ~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a 335 (512)
+++.++++.+ ++|+||||||.... +.+.++++..+++|+.++.++++++.+.+.+ +.++||++||...
T Consensus 68 ~~~~~~~~~~-----~~d~vih~A~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~--~~~~iv~~SS~~v 135 (372)
T 1db3_A 68 SNLTRILREV-----QPDEVYNLGAMSHV-----AVSFESPEYTADVDAMGTLRLLEAIRFLGLE--KKTRFYQASTSEL 135 (372)
T ss_dssp HHHHHHHHHH-----CCSEEEECCCCCTT-----TTTTSCHHHHHHHHTHHHHHHHHHHHHTTCT--TTCEEEEEEEGGG
T ss_pred HHHHHHHHhc-----CCCEEEECCcccCc-----cccccCHHHHHHHHHHHHHHHHHHHHHhCCC--CCcEEEEeCChhh
Confidence 9999888765 69999999997541 2344567889999999999999999876432 2379999998622
Q ss_pred CC----------CCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCccc
Q 010380 336 GG----------SSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVL 380 (512)
Q Consensus 336 ~~----------~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~ 380 (512)
.. .+......|+.||++.+.+++.++.++ |+.+..+.|..+.
T Consensus 136 ~g~~~~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~r~~~~~ 187 (372)
T 1db3_A 136 YGLVQEIPQKETTPFYPRSPYAVAKLYAYWITVNYRESY---GMYACNGILFNHE 187 (372)
T ss_dssp GTTCCSSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH---CCCEEEEEECCEE
T ss_pred hCCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHHHHHh---CCCeEEEEECCcc
Confidence 11 112346789999999999999999887 4666566655443
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.3e-17 Score=169.17 Aligned_cols=160 Identities=19% Similarity=0.201 Sum_probs=122.5
Q ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhh
Q 010380 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPAD 257 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~s 257 (512)
.+|+||||+|+||.+++++|+++|++|++++|+.++.+. + ...++.++.+|++|.++
T Consensus 14 M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~----l-------------------~~~~~~~~~~Dl~d~~~ 70 (342)
T 2x4g_A 14 VKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQR----L-------------------AYLEPECRVAEMLDHAG 70 (342)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGGG----G-------------------GGGCCEEEECCTTCHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhhh----h-------------------ccCCeEEEEecCCCHHH
Confidence 379999999999999999999999999999998765321 1 11257789999999988
Q ss_pred HHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCCC
Q 010380 258 VQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGG 337 (512)
Q Consensus 258 v~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~~ 337 (512)
+.++++ ++|+|||+||... .+.+++++.+++|+.++.++++++.+. +.++||++||.. ..
T Consensus 71 ~~~~~~-------~~d~vih~a~~~~-------~~~~~~~~~~~~n~~~~~~l~~a~~~~-----~~~~~v~~SS~~-~~ 130 (342)
T 2x4g_A 71 LERALR-------GLDGVIFSAGYYP-------SRPRRWQEEVASALGQTNPFYAACLQA-----RVPRILYVGSAY-AM 130 (342)
T ss_dssp HHHHTT-------TCSEEEEC-------------------CHHHHHHHHHHHHHHHHHHH-----TCSCEEEECCGG-GS
T ss_pred HHHHHc-------CCCEEEECCccCc-------CCCCCHHHHHHHHHHHHHHHHHHHHHc-----CCCeEEEECCHH-hh
Confidence 877654 5999999999643 234577889999999999999998774 346899999873 33
Q ss_pred CCCCC----------------cchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcc
Q 010380 338 SSTPL----------------TAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLL 384 (512)
Q Consensus 338 ~~~p~----------------~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~ 384 (512)
...+. ...|+.+|.+.+.+++.++. . |++++++.||.|.++..
T Consensus 131 ~~~~~~~~~~E~~~~~p~~~~~~~Y~~sK~~~e~~~~~~~~---~-g~~~~ilrp~~v~g~~~ 189 (342)
T 2x4g_A 131 PRHPQGLPGHEGLFYDSLPSGKSSYVLCKWALDEQAREQAR---N-GLPVVIGIPGMVLGELD 189 (342)
T ss_dssp CCCTTSSCBCTTCCCSSCCTTSCHHHHHHHHHHHHHHHHHH---T-TCCEEEEEECEEECSCC
T ss_pred CcCCCCCCCCCCCCCCccccccChHHHHHHHHHHHHHHHhh---c-CCcEEEEeCCceECCCC
Confidence 22222 67899999999999999886 3 79999999999998865
|
| >1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.8e-17 Score=171.45 Aligned_cols=161 Identities=15% Similarity=0.105 Sum_probs=123.9
Q ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhh-----HHHHHHHHHHHHhhhhhhcCCCCcccccCc-eEEEEEcc
Q 010380 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSES-----VRMTVTELEENLKEGMMAAGGSSKKNLVHA-KVAGIACD 251 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~-----l~~~~~el~~~~~~~~~~~g~~~~~~~~g~-~v~~v~~D 251 (512)
|+||||||+|+||.+++++|+++|++|++++|+.+. ++....++.. .+. ++.++.+|
T Consensus 29 k~vlVtGatG~IG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~D 91 (381)
T 1n7h_A 29 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHN-----------------VNKALMKLHYAD 91 (381)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTTTTC-------------------------CCEEEEECC
T ss_pred CeEEEEcCCchHHHHHHHHHHHCCCEEEEEecCCccccchhhhhhhhcccc-----------------ccccceEEEECC
Confidence 789999999999999999999999999999998653 2111111100 122 68889999
Q ss_pred CCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeec
Q 010380 252 VCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD 331 (512)
Q Consensus 252 ltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vS 331 (512)
++|.+++.++++.+ ++|+||||||.... ..+.++++..+++|+.++.++++++.+.+.++++.++||++|
T Consensus 92 l~d~~~~~~~~~~~-----~~d~Vih~A~~~~~-----~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~~~~~~v~~S 161 (381)
T 1n7h_A 92 LTDASSLRRWIDVI-----KPDEVYNLAAQSHV-----AVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAG 161 (381)
T ss_dssp TTCHHHHHHHHHHH-----CCSEEEECCSCCCH-----HHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_pred CCCHHHHHHHHHhc-----CCCEEEECCcccCc-----cccccCHHHHHHHHHHHHHHHHHHHHHhCCccCCccEEEEeC
Confidence 99999999888765 79999999997531 233567889999999999999999999876543457999999
Q ss_pred CCCCCCC---------CCCCcchhhHHHHHHHHHHHHHHHHhC
Q 010380 332 GAGSGGS---------STPLTAVYGSTKCGLRQLQASLFKESK 365 (512)
Q Consensus 332 S~~a~~~---------~~p~~~~Y~aSKaAl~~l~~sLa~El~ 365 (512)
|...... +......|+.+|++.+.+++.++.++.
T Consensus 162 S~~vyg~~~~~~~E~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~ 204 (381)
T 1n7h_A 162 SSEMFGSTPPPQSETTPFHPRSPYAASKCAAHWYTVNYREAYG 204 (381)
T ss_dssp EGGGGTTSCSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHHC
T ss_pred cHHHhCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHhC
Confidence 8632111 234567899999999999999998873
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.7e-18 Score=163.59 Aligned_cols=156 Identities=17% Similarity=0.145 Sum_probs=122.1
Q ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhh
Q 010380 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPAD 257 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~s 257 (512)
++|+||||+|+||++++++|+++|++|++++|++++.+. ...++.++.+|++|+++
T Consensus 5 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------------------------~~~~~~~~~~Dl~d~~~ 60 (227)
T 3dhn_A 5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKI------------------------ENEHLKVKKADVSSLDE 60 (227)
T ss_dssp CEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCC------------------------CCTTEEEECCCTTCHHH
T ss_pred CEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchh------------------------ccCceEEEEecCCCHHH
Confidence 689999999999999999999999999999999765321 12468899999999999
Q ss_pred HHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCCC
Q 010380 258 VQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGG 337 (512)
Q Consensus 258 v~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~~ 337 (512)
+.++++ .+|+||||||.... ....+++|+.++.++++++.. . +.++||++||.+ ..
T Consensus 61 ~~~~~~-------~~d~vi~~a~~~~~-----------~~~~~~~n~~~~~~l~~~~~~----~-~~~~~v~~Ss~~-~~ 116 (227)
T 3dhn_A 61 VCEVCK-------GADAVISAFNPGWN-----------NPDIYDETIKVYLTIIDGVKK----A-GVNRFLMVGGAG-SL 116 (227)
T ss_dssp HHHHHT-------TCSEEEECCCC-----------------CCSHHHHHHHHHHHHHHH----T-TCSEEEEECCST-TS
T ss_pred HHHHhc-------CCCEEEEeCcCCCC-----------ChhHHHHHHHHHHHHHHHHHH----h-CCCEEEEeCChh-hc
Confidence 888765 58999999986421 112678899998888877644 3 346899999873 22
Q ss_pred CCC----------CCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcc
Q 010380 338 SST----------PLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLL 384 (512)
Q Consensus 338 ~~~----------p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~ 384 (512)
.+. .....|+.+|.+.+.+.+.++.+ .|++++++.||.+.+|..
T Consensus 117 ~~~~~~~~~~~~~~p~~~Y~~sK~~~e~~~~~~~~~---~~~~~~ilrp~~v~g~~~ 170 (227)
T 3dhn_A 117 FIAPGLRLMDSGEVPENILPGVKALGEFYLNFLMKE---KEIDWVFFSPAADMRPGV 170 (227)
T ss_dssp EEETTEEGGGTTCSCGGGHHHHHHHHHHHHHTGGGC---CSSEEEEEECCSEEESCC
T ss_pred cCCCCCccccCCcchHHHHHHHHHHHHHHHHHHhhc---cCccEEEEeCCcccCCCc
Confidence 222 23578999999999988888764 489999999999987653
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.5e-17 Score=169.78 Aligned_cols=179 Identities=12% Similarity=0.045 Sum_probs=137.8
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
+.+.+|+||||||+|+||.+++++|+++|++|++++|+........+.+....... ...++.++.+|+
T Consensus 21 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~Dl 88 (351)
T 3ruf_A 21 LIFSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTE------------QWSRFCFIEGDI 88 (351)
T ss_dssp HHHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHH------------HHTTEEEEECCT
T ss_pred CCCCCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccc------------cCCceEEEEccC
Confidence 44678999999999999999999999999999999998665444444443311000 014688999999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|.+++.++++ ++|+|||+||.... ..+.++.+..+++|+.++.++++++... +.++||++||
T Consensus 89 ~d~~~~~~~~~-------~~d~Vih~A~~~~~-----~~~~~~~~~~~~~nv~~~~~ll~a~~~~-----~~~~~v~~SS 151 (351)
T 3ruf_A 89 RDLTTCEQVMK-------GVDHVLHQAALGSV-----PRSIVDPITTNATNITGFLNILHAAKNA-----QVQSFTYAAS 151 (351)
T ss_dssp TCHHHHHHHTT-------TCSEEEECCCCCCH-----HHHHHCHHHHHHHHTHHHHHHHHHHHHT-----TCSEEEEEEE
T ss_pred CCHHHHHHHhc-------CCCEEEECCccCCc-----chhhhCHHHHHHHHHHHHHHHHHHHHHc-----CCCEEEEEec
Confidence 99998887765 69999999997431 2234567789999999999998887542 3468999998
Q ss_pred CCCCCCCC-----------CCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcc
Q 010380 333 AGSGGSST-----------PLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLL 384 (512)
Q Consensus 333 ~~a~~~~~-----------p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~ 384 (512)
.. ..... .....|+.+|.+.+.+++.++.+. |++++++.||.|-.|..
T Consensus 152 ~~-vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---g~~~~ilRp~~v~G~~~ 210 (351)
T 3ruf_A 152 SS-TYGDHPALPKVEENIGNPLSPYAVTKYVNEIYAQVYARTY---GFKTIGLRYFNVFGRRQ 210 (351)
T ss_dssp GG-GGTTCCCSSBCTTCCCCCCSHHHHHHHHHHHHHHHHHHHH---CCCCEEEEECSEESTTC
T ss_pred HH-hcCCCCCCCCccCCCCCCCChhHHHHHHHHHHHHHHHHHh---CCCEEEEeeCceeCcCC
Confidence 63 22111 224689999999999999999887 79999999999987754
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.73 E-value=5.3e-17 Score=154.27 Aligned_cols=148 Identities=14% Similarity=0.206 Sum_probs=108.5
Q ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhhH
Q 010380 179 NVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPADV 258 (512)
Q Consensus 179 ~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~sv 258 (512)
+|+||||+|+||++++++|+++|++|++++|++++++.. . ..+.++.+|++|+++
T Consensus 2 kvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~-----------------------~-~~~~~~~~D~~d~~~- 56 (221)
T 3ew7_A 2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQT-----------------------H-KDINILQKDIFDLTL- 56 (221)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHH-----------------------C-SSSEEEECCGGGCCH-
T ss_pred eEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhc-----------------------c-CCCeEEeccccChhh-
Confidence 589999999999999999999999999999998765422 1 357789999999887
Q ss_pred HHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCC
Q 010380 259 QKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGS 338 (512)
Q Consensus 259 ~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~~~ 338 (512)
+.+.++|+||||||.... ..++|+ ..++.+++.+++. +.+++|++||.+ ...
T Consensus 57 --------~~~~~~d~vi~~ag~~~~--------------~~~~~~----~~~~~l~~a~~~~-~~~~~v~~SS~~-~~~ 108 (221)
T 3ew7_A 57 --------SDLSDQNVVVDAYGISPD--------------EAEKHV----TSLDHLISVLNGT-VSPRLLVVGGAA-SLQ 108 (221)
T ss_dssp --------HHHTTCSEEEECCCSSTT--------------TTTSHH----HHHHHHHHHHCSC-CSSEEEEECCCC----
T ss_pred --------hhhcCCCEEEECCcCCcc--------------ccchHH----HHHHHHHHHHHhc-CCceEEEEecce-EEE
Confidence 223579999999998431 022344 4456666777765 568999999873 322
Q ss_pred CCC------------CcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCC
Q 010380 339 STP------------LTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTD 382 (512)
Q Consensus 339 ~~p------------~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~ 382 (512)
+.+ ....|+.+|.+.+.+ +.+.. ...|+++++|+||.+.++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~y~~~k~~~e~~-~~~~~--~~~gi~~~ivrp~~v~g~ 161 (221)
T 3ew7_A 109 IDEDGNTLLESKGLREAPYYPTARAQAKQL-EHLKS--HQAEFSWTYISPSAMFEP 161 (221)
T ss_dssp ----------------CCCSCCHHHHHHHH-HHHHT--TTTTSCEEEEECSSCCCC
T ss_pred cCCCCccccccCCCCCHHHHHHHHHHHHHH-HHHHh--hccCccEEEEeCcceecC
Confidence 221 245699999999887 33332 156899999999999987
|
| >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.4e-17 Score=169.56 Aligned_cols=168 Identities=14% Similarity=0.161 Sum_probs=130.5
Q ss_pred CEEEEECCCChHHHHHHHHHHHC--CCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCCh
Q 010380 178 RNVVITGSTRGLGKALAREFLLS--GDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEP 255 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~--Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~ 255 (512)
++|+||||+|+||.+++++|+++ |++|++++|+...... +.+.+ ..+.++.++.+|++|+
T Consensus 5 ~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~--~~~~~----------------~~~~~~~~~~~Dl~d~ 66 (348)
T 1oc2_A 5 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNK--ANLEA----------------ILGDRVELVVGDIADA 66 (348)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCG--GGTGG----------------GCSSSEEEEECCTTCH
T ss_pred cEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeCCCCCCCh--hHHhh----------------hccCCeEEEECCCCCH
Confidence 68999999999999999999998 8999999997531100 00000 0124688899999999
Q ss_pred hhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCC
Q 010380 256 ADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGS 335 (512)
Q Consensus 256 ~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a 335 (512)
+++.++++ .+|+||||||... .+.+.++++..+++|+.++.++++++.+. + ++||++||...
T Consensus 67 ~~~~~~~~-------~~d~vih~A~~~~-----~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~-----~-~~~v~~SS~~v 128 (348)
T 1oc2_A 67 ELVDKLAA-------KADAIVHYAAESH-----NDNSLNDPSPFIHTNFIGTYTLLEAARKY-----D-IRFHHVSTDEV 128 (348)
T ss_dssp HHHHHHHT-------TCSEEEECCSCCC-----HHHHHHCCHHHHHHHTHHHHHHHHHHHHH-----T-CEEEEEEEGGG
T ss_pred HHHHHHhh-------cCCEEEECCcccC-----ccchhhCHHHHHHHHHHHHHHHHHHHHHh-----C-CeEEEecccce
Confidence 88877765 4699999999743 12234567889999999999999999875 2 39999998631
Q ss_pred C-CC---------------------CCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcc
Q 010380 336 G-GS---------------------STPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLL 384 (512)
Q Consensus 336 ~-~~---------------------~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~ 384 (512)
. .. +.+....|+.||++.+.+++.++.++ |++++++.||.|.++..
T Consensus 129 yg~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---gi~~~ilrp~~v~G~~~ 196 (348)
T 1oc2_A 129 YGDLPLREDLPGHGEGPGEKFTAETNYNPSSPYSSTKAASDLIVKAWVRSF---GVKATISNCSNNYGPYQ 196 (348)
T ss_dssp GCCBCCGGGSTTTTCSTTSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH---CCEEEEEEECCEESTTC
T ss_pred eCCCcccccccccccccCCCcCCCCCCCCCCccHHHHHHHHHHHHHHHHHh---CCCEEEEeeceeeCCCC
Confidence 1 11 23455789999999999999999887 79999999999998875
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.7e-17 Score=171.92 Aligned_cols=171 Identities=13% Similarity=0.027 Sum_probs=133.5
Q ss_pred cCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEcc
Q 010380 172 HCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACD 251 (512)
Q Consensus 172 ~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~D 251 (512)
.+...+++|+||||+|+||.+++++|+++|++|++++|+..+.... ...++.++.+|
T Consensus 24 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~-----------------------~~~~v~~~~~D 80 (379)
T 2c5a_A 24 YWPSENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTE-----------------------DMFCDEFHLVD 80 (379)
T ss_dssp SCTTSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCG-----------------------GGTCSEEEECC
T ss_pred cccccCCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCccchhh-----------------------ccCCceEEECC
Confidence 3445678999999999999999999999999999999986542100 12357789999
Q ss_pred CCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeec
Q 010380 252 VCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD 331 (512)
Q Consensus 252 ltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vS 331 (512)
++|.+++.++++ ++|+|||+||... .. ..+.++++..+++|+.++.++++++.. . +.++||++|
T Consensus 81 l~d~~~~~~~~~-------~~d~Vih~A~~~~-~~---~~~~~~~~~~~~~Nv~g~~~ll~a~~~----~-~~~~~V~~S 144 (379)
T 2c5a_A 81 LRVMENCLKVTE-------GVDHVFNLAADMG-GM---GFIQSNHSVIMYNNTMISFNMIEAARI----N-GIKRFFYAS 144 (379)
T ss_dssp TTSHHHHHHHHT-------TCSEEEECCCCCC-CH---HHHTTCHHHHHHHHHHHHHHHHHHHHH----T-TCSEEEEEE
T ss_pred CCCHHHHHHHhC-------CCCEEEECceecC-cc---cccccCHHHHHHHHHHHHHHHHHHHHH----c-CCCEEEEEe
Confidence 999998887764 6999999999753 11 111345788999999999999998854 2 346999999
Q ss_pred CCCCCCC-----------------CCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcc
Q 010380 332 GAGSGGS-----------------STPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLL 384 (512)
Q Consensus 332 S~~a~~~-----------------~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~ 384 (512)
|...... +......|+.+|.+.+.+++.++.+. |++++++.||.|.+|..
T Consensus 145 S~~v~~~~~~~~~~~~~~~E~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilrp~~v~G~~~ 211 (379)
T 2c5a_A 145 SACIYPEFKQLETTNVSLKESDAWPAEPQDAFGLEKLATEELCKHYNKDF---GIECRIGRFHNIYGPFG 211 (379)
T ss_dssp EGGGSCGGGSSSSSSCEECGGGGSSBCCSSHHHHHHHHHHHHHHHHHHHH---CCEEEEEEECCEECTTS
T ss_pred ehheeCCCCCCCccCCCcCcccCCCCCCCChhHHHHHHHHHHHHHHHHHH---CCCEEEEEeCceeCcCC
Confidence 8632111 22345689999999999999998876 79999999999998754
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=7.8e-18 Score=168.89 Aligned_cols=163 Identities=17% Similarity=0.116 Sum_probs=128.7
Q ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhh
Q 010380 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPAD 257 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~s 257 (512)
++||||||+|+||.+++++|+++|++|++++|+.+...+. ....+.++.+|++|.+
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~-----------------------~~~~~~~~~~Dl~d~~- 56 (312)
T 3ko8_A 1 MRIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRREF-----------------------VNPSAELHVRDLKDYS- 56 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSCCGGG-----------------------SCTTSEEECCCTTSTT-
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCchhh-----------------------cCCCceEEECccccHH-
Confidence 4689999999999999999999999999999986542210 1245778999999987
Q ss_pred HHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCCC
Q 010380 258 VQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGG 337 (512)
Q Consensus 258 v~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~~ 337 (512)
+.++++ . |+|||+||... .+.+.++++..+++|+.++.++++++... +.++||++||.....
T Consensus 57 ~~~~~~-------~-d~vih~A~~~~-----~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-----~~~~iv~~SS~~vyg 118 (312)
T 3ko8_A 57 WGAGIK-------G-DVVFHFAANPE-----VRLSTTEPIVHFNENVVATFNVLEWARQT-----GVRTVVFASSSTVYG 118 (312)
T ss_dssp TTTTCC-------C-SEEEECCSSCS-----SSGGGSCHHHHHHHHHHHHHHHHHHHHHH-----TCCEEEEEEEGGGGC
T ss_pred HHhhcC-------C-CEEEECCCCCC-----chhhhhCHHHHHHHHHHHHHHHHHHHHHc-----CCCEEEEeCcHHHhC
Confidence 654432 3 99999999643 23455678899999999999999988543 356899999863211
Q ss_pred ----------CCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCccc
Q 010380 338 ----------SSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLL 385 (512)
Q Consensus 338 ----------~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~ 385 (512)
.+..+...|+.||.+.+.+++.++.++ |++++++.||.|.+|...
T Consensus 119 ~~~~~~~~e~~~~~p~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~lrp~~v~g~~~~ 173 (312)
T 3ko8_A 119 DADVIPTPEEEPYKPISVYGAAKAAGEVMCATYARLF---GVRCLAVRYANVVGPRLR 173 (312)
T ss_dssp SCSSSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH---CCEEEEEEECEEECTTCC
T ss_pred CCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCCEEEEeeccccCcCCC
Confidence 123346789999999999999999988 799999999999998643
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=3.4e-17 Score=166.85 Aligned_cols=160 Identities=10% Similarity=0.043 Sum_probs=124.8
Q ss_pred cccCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEE
Q 010380 170 EEHCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIA 249 (512)
Q Consensus 170 ~~~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~ 249 (512)
.+..+.++|+||||||+|+||.+++++|+++|++|++++|+.+. .++.++.
T Consensus 12 ~~~~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~-----------------------------~~~~~~~ 62 (347)
T 4id9_A 12 SGLVPRGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSG-----------------------------TGGEEVV 62 (347)
T ss_dssp ---------CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCS-----------------------------SCCSEEE
T ss_pred CcccccCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCC-----------------------------CCccEEe
Confidence 34556788999999999999999999999999999999998653 2456789
Q ss_pred ccCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEe
Q 010380 250 CDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFN 329 (512)
Q Consensus 250 ~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~ 329 (512)
+|++|.+++.++++ ++|+|||+||... .+.++++..+++|+.++.++++++.. . +.++||+
T Consensus 63 ~Dl~d~~~~~~~~~-------~~d~vih~A~~~~-------~~~~~~~~~~~~nv~~~~~ll~a~~~----~-~~~~~V~ 123 (347)
T 4id9_A 63 GSLEDGQALSDAIM-------GVSAVLHLGAFMS-------WAPADRDRMFAVNVEGTRRLLDAASA----A-GVRRFVF 123 (347)
T ss_dssp SCTTCHHHHHHHHT-------TCSEEEECCCCCC-------SSGGGHHHHHHHHTHHHHHHHHHHHH----T-TCSEEEE
T ss_pred cCcCCHHHHHHHHh-------CCCEEEECCcccC-------cchhhHHHHHHHHHHHHHHHHHHHHH----c-CCCeEEE
Confidence 99999998887765 7999999999754 23445689999999999999888754 2 4569999
Q ss_pred ecCCCCCC------------CCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCccc
Q 010380 330 MDGAGSGG------------SSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVL 380 (512)
Q Consensus 330 vSS~~a~~------------~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~ 380 (512)
+||..... .+......|+.+|.+.+.+++.++.+. |++++++.|+.|.
T Consensus 124 ~SS~~vyg~~~~~~~~~~E~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~ 183 (347)
T 4id9_A 124 ASSGEVYPENRPEFLPVTEDHPLCPNSPYGLTKLLGEELVRFHQRSG---AMETVILRFSHTQ 183 (347)
T ss_dssp EEEGGGTTTTSCSSSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHS---SSEEEEEEECEEE
T ss_pred ECCHHHhCCCCCCCCCcCCCCCCCCCChHHHHHHHHHHHHHHHHHhc---CCceEEEccceEe
Confidence 99852211 123456789999999999999998885 8999999999997
|
| >1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.72 E-value=3.3e-17 Score=169.03 Aligned_cols=173 Identities=13% Similarity=0.013 Sum_probs=130.1
Q ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhh-----HHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSES-----VRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~-----l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
|+||||||+|+||.+++++|+++|++|++++|+.+. ++...+++.. ..+.++.++.+|+
T Consensus 25 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~l~~~~~~----------------~~~~~~~~~~~Dl 88 (375)
T 1t2a_A 25 NVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQA----------------HIEGNMKLHYGDL 88 (375)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTGGGC-------------------------CEEEEECCT
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEECCccccchhhHHHHhhhhcc----------------ccCCCceEEEccC
Confidence 689999999999999999999999999999998543 1111110000 0124678899999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|++++.++++.+ ++|+||||||... ...+.++++..+++|+.++.++++++.+...+ +.++||++||
T Consensus 89 ~d~~~~~~~~~~~-----~~d~vih~A~~~~-----~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~--~~~~iv~~SS 156 (375)
T 1t2a_A 89 TDSTCLVKIINEV-----KPTEIYNLGAQSH-----VKISFDLAEYTADVDGVGTLRLLDAVKTCGLI--NSVKFYQAST 156 (375)
T ss_dssp TCHHHHHHHHHHH-----CCSEEEECCSCCC-----HHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCT--TTCEEEEEEE
T ss_pred CCHHHHHHHHHhc-----CCCEEEECCCccc-----ccccccCHHHHHHHHHHHHHHHHHHHHHhCCC--ccceEEEecc
Confidence 9999999888765 6999999999743 11234677899999999999999998776432 2379999998
Q ss_pred CCCCCC-----------CCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCC
Q 010380 333 AGSGGS-----------STPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTD 382 (512)
Q Consensus 333 ~~a~~~-----------~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~ 382 (512)
.. ... +..+...|+.||++.+.+++.++.++ |+.+.++.|+.+..|
T Consensus 157 ~~-~~~~~~~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~i~r~~~~~gp 213 (375)
T 1t2a_A 157 SE-LYGKVQEIPQKETTPFYPRSPYGAAKLYAYWIVVNFREAY---NLFAVNGILFNHESP 213 (375)
T ss_dssp GG-GTCSCSSSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH---CCEEEEEEECCEECT
T ss_pred hh-hhCCCCCCCCCccCCCCCCChhHHHHHHHHHHHHHHHHHh---CCCEEEEecccccCC
Confidence 63 221 12245789999999999999999887 588888887766544
|
| >2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=2.1e-17 Score=166.03 Aligned_cols=165 Identities=14% Similarity=0.115 Sum_probs=128.3
Q ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhhH
Q 010380 179 NVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPADV 258 (512)
Q Consensus 179 ~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~sv 258 (512)
+|+||||+|+||.+++++|+++|++|++++|......+ . ...++.++.+|++|++++
T Consensus 2 ~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~---~--------------------~~~~~~~~~~Dl~~~~~~ 58 (311)
T 2p5y_A 2 RVLVTGGAGFIGSHIVEDLLARGLEVAVLDNLATGKRE---N--------------------VPKGVPFFRVDLRDKEGV 58 (311)
T ss_dssp EEEEETTTSHHHHHHHHHHHTTTCEEEEECCCSSCCGG---G--------------------SCTTCCEECCCTTCHHHH
T ss_pred EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCCcCchh---h--------------------cccCeEEEECCCCCHHHH
Confidence 58999999999999999999999999999985432100 0 112456789999999999
Q ss_pred HHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC-CC-C
Q 010380 259 QKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA-GS-G 336 (512)
Q Consensus 259 ~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~-~a-~ 336 (512)
+++++.. ++|++||+||... ...+.++++..+++|+.|++++++++.. . +.++||++||. .. +
T Consensus 59 ~~~~~~~-----~~d~vi~~a~~~~-----~~~~~~~~~~~~~~N~~g~~~l~~a~~~----~-~~~~iv~~SS~~~~~g 123 (311)
T 2p5y_A 59 ERAFREF-----RPTHVSHQAAQAS-----VKVSVEDPVLDFEVNLLGGLNLLEACRQ----Y-GVEKLVFASTGGAIYG 123 (311)
T ss_dssp HHHHHHH-----CCSEEEECCSCCC-----HHHHHHCHHHHHHHHTHHHHHHHHHHHH----T-TCSEEEEEEEHHHHHC
T ss_pred HHHHHhc-----CCCEEEECccccC-----chhhhhCHHHHHHHHHHHHHHHHHHHHH----h-CCCEEEEeCCChhhcC
Confidence 8887642 6899999999743 1234567788999999999999998753 2 35699999986 11 1
Q ss_pred C----C------CCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcc
Q 010380 337 G----S------STPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLL 384 (512)
Q Consensus 337 ~----~------~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~ 384 (512)
. . +..+...|++||++++.+++.++.++ |++++++.||.|.+|..
T Consensus 124 ~~~~~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lrp~~v~Gp~~ 178 (311)
T 2p5y_A 124 EVPEGERAEETWPPRPKSPYAASKAAFEHYLSVYGQSY---GLKWVSLRYGNVYGPRQ 178 (311)
T ss_dssp CCCTTCCBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH---CCCEEEEEECEEECTTC
T ss_pred CCCCCCCcCCCCCCCCCChHHHHHHHHHHHHHHHHHHc---CCCEEEEeeccccCcCC
Confidence 1 0 11245689999999999999999886 79999999999998864
|
| >1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=5.6e-17 Score=164.62 Aligned_cols=169 Identities=17% Similarity=0.141 Sum_probs=124.0
Q ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhhH
Q 010380 179 NVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPADV 258 (512)
Q Consensus 179 ~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~sv 258 (512)
+|+||||+|+||.+++++|+++|++|++++|......+..+++.+. .+.++.++.+|++|++++
T Consensus 2 ~vlVTGatG~iG~~l~~~L~~~G~~V~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~Dl~~~~~~ 65 (338)
T 1udb_A 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERL----------------GGKHPTFVEGDIRNEALM 65 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHH----------------HTSCCEEEECCTTCHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCCcchhHHHHHHhh----------------cCCcceEEEccCCCHHHH
Confidence 5899999999999999999999999999987532211222223221 124577889999999998
Q ss_pred HHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCCC-
Q 010380 259 QKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGG- 337 (512)
Q Consensus 259 ~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~~- 337 (512)
+++++.. ++|+||||||... .. ...++.++.+++|+.+++++++++.. . +.++||++||.....
T Consensus 66 ~~~~~~~-----~~D~vih~A~~~~-~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~-~~~~iv~~SS~~~~g~ 130 (338)
T 1udb_A 66 TEILHDH-----AIDTVIHFAGLKA-VG----ESVQKPLEYYDNNVNGTLRLISAMRA----A-NVKNFIFSSSATVYGD 130 (338)
T ss_dssp HHHHHHT-----TCSEEEECCSCCC-HH----HHHHCHHHHHHHHHHHHHHHHHHHHH----H-TCCEEEEEEEGGGGCS
T ss_pred HHHhhcc-----CCCEEEECCccCc-cc----cchhcHHHHHHHHHHHHHHHHHHHHh----c-CCCeEEEEccHHHhCC
Confidence 8877642 6999999999743 11 12345677899999999999886533 2 356999999863211
Q ss_pred ---------CCC-CCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCccc
Q 010380 338 ---------SST-PLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVL 380 (512)
Q Consensus 338 ---------~~~-p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~ 380 (512)
.+. |....|++||++++.+++.++.+. .|+++.++.|+.+-
T Consensus 131 ~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~ilR~~~v~ 181 (338)
T 1udb_A 131 NPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQ--PDWSIALLRYFNPV 181 (338)
T ss_dssp CCSSSBCTTSCCCCCSSHHHHHHHHHHHHHHHHHHHS--TTCEEEEEEECEEE
T ss_pred CCCCCcCcccCCCCCCChHHHHHHHHHHHHHHHHHhc--CCCceEEEeeceec
Confidence 111 336789999999999999999885 37899888886553
|
| >4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.7e-17 Score=173.24 Aligned_cols=178 Identities=16% Similarity=0.125 Sum_probs=129.1
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChh---hHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEc
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSE---SVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIAC 250 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~---~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~ 250 (512)
+..+++||||||+|+||.+++++|+++|++|++++|+.+ ..+.+.+.+.+...... ....+.++.++.+
T Consensus 66 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~l~~~l~~~~~~~~--------~~~~~~~v~~v~~ 137 (427)
T 4f6c_A 66 HRPLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEET--------VEMMLSNIEVIVG 137 (427)
T ss_dssp CCCCEEEEEECTTSHHHHHHHHHHTTTEEEEEEEEECSSHHHHHHHHHHHHHHHSCHHH--------HHHHHTTEEEEEE
T ss_pred CCCCCEEEEecCCcHHHHHHHHHHHcCCCEEEEEECCCChHHHHHHHHHHHHHhccccc--------cccccCceEEEeC
Confidence 456789999999999999999999999999999999977 33333333332110000 0002357889999
Q ss_pred cCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEee
Q 010380 251 DVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNM 330 (512)
Q Consensus 251 Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~v 330 (512)
|++|++++. ..+++|+||||||... ..++++..+++|+.++.++++++.+ +..+||++
T Consensus 138 Dl~d~~~l~--------~~~~~d~Vih~A~~~~--------~~~~~~~~~~~Nv~g~~~l~~aa~~------~~~~~v~~ 195 (427)
T 4f6c_A 138 DFECMDDVV--------LPENMDTIIHAGARTD--------HFGDDDEFEKVNVQGTVDVIRLAQQ------HHARLIYV 195 (427)
T ss_dssp CC---CCCC--------CSSCCSEEEECCCCC---------------CHHHHHHHHHHHHHHHHHH------TTCEEEEE
T ss_pred CCCCcccCC--------CcCCCCEEEECCcccC--------CCCCHHHHHHHHHHHHHHHHHHHHh------cCCcEEEE
Confidence 999988877 4578999999999753 1256788999999999999999876 24689999
Q ss_pred cCCCCCCC-----------------CCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCccc
Q 010380 331 DGAGSGGS-----------------STPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLL 385 (512)
Q Consensus 331 SS~~a~~~-----------------~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~ 385 (512)
||...+.. +......|+.||.+.+.+++.++. .|++++++.||.|.++...
T Consensus 196 SS~~~G~~~~~~~~~~~~~E~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~----~g~~~~ivRpg~v~G~~~~ 263 (427)
T 4f6c_A 196 STISVGTYFDIDTEDVTFSEADVYKGQLLTSPYTRSKFYSELKVLEAVN----NGLDGRIVRVGNLTSPYNG 263 (427)
T ss_dssp EEGGGGSEECSSCSCCEECTTCSCSSCCCCSHHHHHHHHHHHHHHHHHH----TTCCEEEEEECCEESCSSS
T ss_pred CchHhCCCccCCCCCccccccccccCCCCCCchHHHHHHHHHHHHHHHH----cCCCEEEEeCCeeecCCCC
Confidence 98743110 122567899999999999998764 4899999999999887643
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.6e-17 Score=155.40 Aligned_cols=149 Identities=14% Similarity=0.129 Sum_probs=110.7
Q ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhhH
Q 010380 179 NVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPADV 258 (512)
Q Consensus 179 ~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~sv 258 (512)
+|+||||+|+||++++++|+++|++|++++|++++++.. ...++.++.+|++|+++
T Consensus 2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~-----------------------~~~~~~~~~~D~~d~~~- 57 (224)
T 3h2s_A 2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADR-----------------------LGATVATLVKEPLVLTE- 57 (224)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH-----------------------TCTTSEEEECCGGGCCH-
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccccc-----------------------cCCCceEEecccccccH-
Confidence 489999999999999999999999999999998765422 12357889999999987
Q ss_pred HHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCC
Q 010380 259 QKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGS 338 (512)
Q Consensus 259 ~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~~~ 338 (512)
+.+..+|+||||||.... .. ..++|+.++ +.+++.+++. + +++|++||.+ ...
T Consensus 58 --------~~~~~~d~vi~~ag~~~~-~~-----------~~~~n~~~~----~~l~~a~~~~-~-~~~v~~SS~~-~~~ 110 (224)
T 3h2s_A 58 --------ADLDSVDAVVDALSVPWG-SG-----------RGYLHLDFA----THLVSLLRNS-D-TLAVFILGSA-SLA 110 (224)
T ss_dssp --------HHHTTCSEEEECCCCCTT-SS-----------CTHHHHHHH----HHHHHTCTTC-C-CEEEEECCGG-GSB
T ss_pred --------hhcccCCEEEECCccCCC-cc-----------hhhHHHHHH----HHHHHHHHHc-C-CcEEEEecce-eec
Confidence 233579999999998521 10 124566665 5556666665 3 8999999863 322
Q ss_pred CCCC--------------cchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCC
Q 010380 339 STPL--------------TAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTD 382 (512)
Q Consensus 339 ~~p~--------------~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~ 382 (512)
+.+. ...|+.+|++.+.+ .......|+++++|+||++.++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~----~~~~~~~~i~~~ivrp~~v~g~ 164 (224)
T 3h2s_A 111 MPGADHPMILDFPESAASQPWYDGALYQYYEY----QFLQMNANVNWIGISPSEAFPS 164 (224)
T ss_dssp CTTCSSCGGGGCCGGGGGSTTHHHHHHHHHHH----HHHTTCTTSCEEEEEECSBCCC
T ss_pred cCCCCccccccCCCCCccchhhHHHHHHHHHH----HHHHhcCCCcEEEEcCccccCC
Confidence 2222 57899999998854 2222457899999999999987
|
| >1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.71 E-value=4.4e-17 Score=165.00 Aligned_cols=176 Identities=14% Similarity=-0.008 Sum_probs=129.6
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
-...+++||||||+|+||.+++++|+++|++|++++|+.+.... ..+... . ...++.++.+|+
T Consensus 10 ~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~~~~-~--------------~~~~~~~~~~Dl 72 (335)
T 1rpn_A 10 HGSMTRSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTR--WRLREL-G--------------IEGDIQYEDGDM 72 (335)
T ss_dssp -----CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCC--HHHHHT-T--------------CGGGEEEEECCT
T ss_pred ccccCCeEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCccccc--cchhhc-c--------------ccCceEEEECCC
Confidence 34568899999999999999999999999999999998654210 011110 0 124688899999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|.+++.++++.+ ++|+||||||.... +.+.++++..+++|+.++.++++++.+. +..++||++||
T Consensus 73 ~d~~~~~~~~~~~-----~~d~Vih~A~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~a~~~~----~~~~~~v~~SS 138 (335)
T 1rpn_A 73 ADACSVQRAVIKA-----QPQEVYNLAAQSFV-----GASWNQPVTTGVVDGLGVTHLLEAIRQF----SPETRFYQAST 138 (335)
T ss_dssp TCHHHHHHHHHHH-----CCSEEEECCSCCCH-----HHHTTSHHHHHHHHTHHHHHHHHHHHHH----CTTSEEEEEEE
T ss_pred CCHHHHHHHHHHc-----CCCEEEECccccch-----hhhhhChHHHHHHHHHHHHHHHHHHHHh----CCCCeEEEEeC
Confidence 9999999888765 79999999996431 1122456789999999999999988654 11369999998
Q ss_pred CCCCCCC-----------CCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCc
Q 010380 333 AGSGGSS-----------TPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDL 383 (512)
Q Consensus 333 ~~a~~~~-----------~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~ 383 (512)
.. .... ......|+.||++.+.+++.++.++ |+.+..+.|+.+-.|.
T Consensus 139 ~~-v~g~~~~~~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~~~---~~~~~i~r~~~v~Gp~ 196 (335)
T 1rpn_A 139 SE-MFGLIQAERQDENTPFYPRSPYGVAKLYGHWITVNYRESF---GLHASSGILFNHESPL 196 (335)
T ss_dssp GG-GGCSCSSSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH---CCCEEEEEECCEECTT
T ss_pred HH-HhCCCCCCCCCcccCCCCCChhHHHHHHHHHHHHHHHHHc---CCcEEEEeeCcccCCC
Confidence 62 2211 1224689999999999999999887 5888888888876653
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-17 Score=171.98 Aligned_cols=177 Identities=21% Similarity=0.170 Sum_probs=125.5
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHH--CCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEc
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLL--SGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIAC 250 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~--~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~ 250 (512)
+++++++||||||+|+||.+++++|++ +|++|++++|+.......... .+. ........+.++.++.+
T Consensus 6 ~~~~~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~-~~~---------~~~~~~~~~~~~~~~~~ 75 (362)
T 3sxp_A 6 DELENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNR-PSS---------LGHFKNLIGFKGEVIAA 75 (362)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEECCCCC--------CCC---------CCCGGGGTTCCSEEEEC
T ss_pred hhcCCCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEECCCccccccccc-hhh---------hhhhhhccccCceEEEC
Confidence 467899999999999999999999999 999999999976521110000 000 00001113456788999
Q ss_pred cCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEee
Q 010380 251 DVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNM 330 (512)
Q Consensus 251 Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~v 330 (512)
|++|+++++++ ...++|+||||||... .+.++++..+++|+.++.++++++.. . +++||++
T Consensus 76 Dl~d~~~~~~~------~~~~~D~vih~A~~~~-------~~~~~~~~~~~~Nv~gt~~ll~aa~~----~--~~~~V~~ 136 (362)
T 3sxp_A 76 DINNPLDLRRL------EKLHFDYLFHQAAVSD-------TTMLNQELVMKTNYQAFLNLLEIARS----K--KAKVIYA 136 (362)
T ss_dssp CTTCHHHHHHH------TTSCCSEEEECCCCCG-------GGCCCHHHHHHHHTHHHHHHHHHHHH----T--TCEEEEE
T ss_pred CCCCHHHHHHh------hccCCCEEEECCccCC-------ccccCHHHHHHHHHHHHHHHHHHHHH----c--CCcEEEe
Confidence 99999988876 2358999999999643 14456789999999999999998833 2 3459999
Q ss_pred cCCCCCCC---------CCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCc
Q 010380 331 DGAGSGGS---------STPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDL 383 (512)
Q Consensus 331 SS~~a~~~---------~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~ 383 (512)
||...... +..+...|+.||.+.+.+++.++.+ +.+..+.|+.|-.|.
T Consensus 137 SS~~vyg~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~-----~~~~~lR~~~v~Gp~ 193 (362)
T 3sxp_A 137 SSAGVYGNTKAPNVVGKNESPENVYGFSKLCMDEFVLSHSND-----NVQVGLRYFNVYGPR 193 (362)
T ss_dssp EEGGGGCSCCSSBCTTSCCCCSSHHHHHHHHHHHHHHHTTTT-----SCEEEEEECSEESTT
T ss_pred CcHHHhCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhcc-----CCEEEEEeCceeCcC
Confidence 98521111 1123456999999999999988776 556666666665543
|
| >3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.71 E-value=3.9e-17 Score=164.21 Aligned_cols=162 Identities=15% Similarity=0.157 Sum_probs=124.4
Q ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhh
Q 010380 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPAD 257 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~s 257 (512)
|+||||||+|+||.+++++|+++|+.|++..|+....+. ....+.++.+|++| ++
T Consensus 2 ~~vlVTGatG~iG~~l~~~L~~~g~~v~~~~~~~~~~~~------------------------~~~~~~~~~~Dl~~-~~ 56 (313)
T 3ehe_A 2 SLIVVTGGAGFIGSHVVDKLSESNEIVVIDNLSSGNEEF------------------------VNEAARLVKADLAA-DD 56 (313)
T ss_dssp -CEEEETTTSHHHHHHHHHHTTTSCEEEECCCSSCCGGG------------------------SCTTEEEECCCTTT-SC
T ss_pred CEEEEECCCchHHHHHHHHHHhCCCEEEEEcCCCCChhh------------------------cCCCcEEEECcCCh-HH
Confidence 479999999999999999999999555554444332110 12457889999999 88
Q ss_pred HHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCCC
Q 010380 258 VQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGG 337 (512)
Q Consensus 258 v~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~~ 337 (512)
+.++++ .+|+|||+||... .+.+.++++..+++|+.++.++++++... +.++||++||.....
T Consensus 57 ~~~~~~-------~~d~vih~a~~~~-----~~~~~~~~~~~~~~nv~~~~~l~~~~~~~-----~~~~iv~~SS~~vyg 119 (313)
T 3ehe_A 57 IKDYLK-------GAEEVWHIAANPD-----VRIGAENPDEIYRNNVLATYRLLEAMRKA-----GVSRIVFTSTSTVYG 119 (313)
T ss_dssp CHHHHT-------TCSEEEECCCCCC-----CC-CCCCHHHHHHHHHHHHHHHHHHHHHH-----TCCEEEEECCGGGGC
T ss_pred HHHHhc-------CCCEEEECCCCCC-----hhhhhhCHHHHHHHHHHHHHHHHHHHHHc-----CCCeEEEeCchHHhC
Confidence 777664 7999999999643 23455678899999999999998885432 356999999863211
Q ss_pred ----------CCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcc
Q 010380 338 ----------SSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLL 384 (512)
Q Consensus 338 ----------~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~ 384 (512)
.+..+...|+.||.+.+.+++.++.++ |++++++.|+.|-.|..
T Consensus 120 ~~~~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~ilRp~~v~G~~~ 173 (313)
T 3ehe_A 120 EAKVIPTPEDYPTHPISLYGASKLACEALIESYCHTF---DMQAWIYRFANVIGRRS 173 (313)
T ss_dssp SCSSSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHT---TCEEEEEECSCEESTTC
T ss_pred cCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhc---CCCEEEEeeccccCcCC
Confidence 233456789999999999999999987 79999999999988753
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A | Back alignment and structure |
|---|
Probab=99.71 E-value=1.2e-17 Score=169.58 Aligned_cols=173 Identities=13% Similarity=0.155 Sum_probs=123.0
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChh
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPA 256 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~ 256 (512)
+|+||||||+|+||.+++++|+++|++|+++.|+.+..+... .+.. .. ...++.++.+|++|++
T Consensus 9 ~~~vlVTGatGfIG~~l~~~Ll~~G~~V~~~~r~~~~~~~~~-~~~~-~~--------------~~~~~~~~~~Dl~d~~ 72 (338)
T 2rh8_A 9 KKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVS-HLLE-LQ--------------ELGDLKIFRADLTDEL 72 (338)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHTTCEEEEEESCTTCTTTTH-HHHH-HG--------------GGSCEEEEECCTTTSS
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCcchhhhHH-HHHh-cC--------------CCCcEEEEecCCCChH
Confidence 689999999999999999999999999999999865432111 1111 00 1235788999999999
Q ss_pred hHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCC
Q 010380 257 DVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSG 336 (512)
Q Consensus 257 sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~ 336 (512)
++.++++ .+|+|||+||... .. ..+..++.+++|+.|++++++++.+.. +.++||++||..+.
T Consensus 73 ~~~~~~~-------~~D~Vih~A~~~~----~~--~~~~~~~~~~~nv~gt~~ll~aa~~~~----~v~r~V~~SS~~~~ 135 (338)
T 2rh8_A 73 SFEAPIA-------GCDFVFHVATPVH----FA--SEDPENDMIKPAIQGVVNVMKACTRAK----SVKRVILTSSAAAV 135 (338)
T ss_dssp SSHHHHT-------TCSEEEEESSCCC----C-----------CHHHHHHHHHHHHHHHHCT----TCCEEEEECCHHHH
T ss_pred HHHHHHc-------CCCEEEEeCCccC----CC--CCCcHHHHHHHHHHHHHHHHHHHHHcC----CcCEEEEEecHHHe
Confidence 8887664 5899999998642 11 112234589999999999999887532 24689999986310
Q ss_pred -----CC---CC------------C---CcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCccc
Q 010380 337 -----GS---ST------------P---LTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLL 385 (512)
Q Consensus 337 -----~~---~~------------p---~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~ 385 (512)
.. +. | ....|+.||.+.+.+++.++.+. |++++++.||.|.+|...
T Consensus 136 ~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gi~~~~lrp~~v~Gp~~~ 204 (338)
T 2rh8_A 136 TINQLDGTGLVVDEKNWTDIEFLTSAKPPTWGYPASKTLAEKAAWKFAEEN---NIDLITVIPTLMAGSSLT 204 (338)
T ss_dssp HHHHHTCSCCCCCTTTTTCC-------CCCCCCTTSCCHHHHHHHHHHHHH---TCCEEEEEECEEESCCSS
T ss_pred ecCCcCCCCcccChhhccchhhccccCCccchHHHHHHHHHHHHHHHHHHc---CCcEEEEeCCceECCCCC
Confidence 00 00 0 11269999999999888877654 799999999999998653
|
| >2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.70 E-value=9.9e-17 Score=162.07 Aligned_cols=165 Identities=16% Similarity=0.107 Sum_probs=129.0
Q ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhh
Q 010380 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPAD 257 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~s 257 (512)
++|+||||+|+||.+++++|+++|++|++++|+..... +. ...++.++.+|++|+++
T Consensus 2 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~---~~--------------------~~~~~~~~~~D~~~~~~ 58 (330)
T 2c20_A 2 NSILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHE---DA--------------------ITEGAKFYNGDLRDKAF 58 (330)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCG---GG--------------------SCTTSEEEECCTTCHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCcCch---hh--------------------cCCCcEEEECCCCCHHH
Confidence 57999999999999999999999999999999754321 00 11257789999999999
Q ss_pred HHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCCC
Q 010380 258 VQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGG 337 (512)
Q Consensus 258 v~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~~ 337 (512)
+++++++ .++|+|||+||.... ..+.++++..+++|+.++.++++++.. . +.++||++||.....
T Consensus 59 ~~~~~~~-----~~~d~vih~a~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~a~~~----~-~~~~~v~~Ss~~~~~ 123 (330)
T 2c20_A 59 LRDVFTQ-----ENIEAVMHFAADSLV-----GVSMEKPLQYYNNNVYGALCLLEVMDE----F-KVDKFIFSSTAATYG 123 (330)
T ss_dssp HHHHHHH-----SCEEEEEECCCCCCH-----HHHHHSHHHHHHHHHHHHHHHHHHHHH----T-TCCEEEEECCGGGGC
T ss_pred HHHHHhh-----cCCCEEEECCcccCc-----cccccCHHHHHHHHhHHHHHHHHHHHH----c-CCCEEEEeCCceeeC
Confidence 8887764 379999999997531 113467788999999999999887643 2 356899999863211
Q ss_pred C----------CCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCc
Q 010380 338 S----------STPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDL 383 (512)
Q Consensus 338 ~----------~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~ 383 (512)
. +......|+.+|.+.+.+++.++.++ |++++++.||.|-.+.
T Consensus 124 ~~~~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~ilrp~~v~G~~ 176 (330)
T 2c20_A 124 EVDVDLITEETMTNPTNTYGETKLAIEKMLHWYSQAS---NLRYKIFRYFNVAGAT 176 (330)
T ss_dssp SCSSSSBCTTSCCCCSSHHHHHHHHHHHHHHHHHHTS---SCEEEEEECSEEECCC
T ss_pred CCCCCCCCcCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEecCcccCCC
Confidence 1 12245789999999999999998875 7999999999988763
|
| >4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.70 E-value=4.6e-17 Score=165.79 Aligned_cols=176 Identities=11% Similarity=0.097 Sum_probs=127.8
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCC--CEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEc
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSG--DRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIAC 250 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~G--a~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~ 250 (512)
+++.+++|+||||+|+||.+++++|+++| ++|+..+|...... .+.+.. .....++.++.+
T Consensus 20 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~~~~~--~~~l~~---------------~~~~~~~~~~~~ 82 (346)
T 4egb_A 20 FQSNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSGN--LNNVKS---------------IQDHPNYYFVKG 82 (346)
T ss_dssp ----CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCCTTCC--GGGGTT---------------TTTCTTEEEEEC
T ss_pred cccCCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEeccccccc--hhhhhh---------------hccCCCeEEEEc
Confidence 44678899999999999999999999999 67888887642110 001100 001257889999
Q ss_pred cCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEee
Q 010380 251 DVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNM 330 (512)
Q Consensus 251 Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~v 330 (512)
|++|.+++.++++.. ++|+|||+||.... ..+.++.+..+++|+.++.++++++... +.++||++
T Consensus 83 Dl~d~~~~~~~~~~~-----~~d~Vih~A~~~~~-----~~~~~~~~~~~~~nv~~~~~ll~a~~~~-----~~~~~v~~ 147 (346)
T 4egb_A 83 EIQNGELLEHVIKER-----DVQVIVNFAAESHV-----DRSIENPIPFYDTNVIGTVTLLELVKKY-----PHIKLVQV 147 (346)
T ss_dssp CTTCHHHHHHHHHHH-----TCCEEEECCCCC--------------CHHHHHHTHHHHHHHHHHHHS-----TTSEEEEE
T ss_pred CCCCHHHHHHHHhhc-----CCCEEEECCcccch-----hhhhhCHHHHHHHHHHHHHHHHHHHHhc-----CCCEEEEe
Confidence 999999999988763 69999999997541 2244677889999999999998887543 35689999
Q ss_pred cCCCCCCCC------------CCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcc
Q 010380 331 DGAGSGGSS------------TPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLL 384 (512)
Q Consensus 331 SS~~a~~~~------------~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~ 384 (512)
||.. .... ......|+.+|.+.+.+++.++.+. |++++++.||.|..|..
T Consensus 148 SS~~-vy~~~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---g~~~~ilRp~~v~G~~~ 209 (346)
T 4egb_A 148 STDE-VYGSLGKTGRFTEETPLAPNSPYSSSKASADMIALAYYKTY---QLPVIVTRCSNNYGPYQ 209 (346)
T ss_dssp EEGG-GGCCCCSSCCBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH---CCCEEEEEECEEESTTC
T ss_pred CchH-HhCCCCcCCCcCCCCCCCCCChhHHHHHHHHHHHHHHHHHh---CCCEEEEeecceeCcCC
Confidence 9862 2211 1234789999999999999999886 79999999999988754
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=99.69 E-value=7.8e-17 Score=163.86 Aligned_cols=163 Identities=20% Similarity=0.153 Sum_probs=120.2
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
..+++++|+||||+|+||.+++++|+++|++|++++|+.....+ .+. .-.++.++.+|+
T Consensus 17 ~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~---~l~------------------~~~~~~~~~~Dl 75 (333)
T 2q1w_A 17 RGSHMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRRE---HLK------------------DHPNLTFVEGSI 75 (333)
T ss_dssp ----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGG---GSC------------------CCTTEEEEECCT
T ss_pred ecCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCCccchh---hHh------------------hcCCceEEEEeC
Confidence 34678999999999999999999999999999999998543110 000 003578899999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|+++++++++. +++|+||||||.... . +.++++ +++|+.++.++++++.+. +.++||++||
T Consensus 76 ~d~~~~~~~~~~-----~~~D~vih~A~~~~~-~-----~~~~~~--~~~N~~~~~~l~~a~~~~-----~~~~iV~~SS 137 (333)
T 2q1w_A 76 ADHALVNQLIGD-----LQPDAVVHTAASYKD-P-----DDWYND--TLTNCVGGSNVVQAAKKN-----NVGRFVYFQT 137 (333)
T ss_dssp TCHHHHHHHHHH-----HCCSEEEECCCCCSC-T-----TCHHHH--HHHHTHHHHHHHHHHHHT-----TCSEEEEEEE
T ss_pred CCHHHHHHHHhc-----cCCcEEEECceecCC-C-----ccCChH--HHHHHHHHHHHHHHHHHh-----CCCEEEEECc
Confidence 999999888765 279999999998641 1 334555 999999999999998762 3579999998
Q ss_pred CCCCCC----C---------CCCcchhhHHHHHHHHHHHH-HHHHhCCCCeEEEEEeCCcccCCc
Q 010380 333 AGSGGS----S---------TPLTAVYGSTKCGLRQLQAS-LFKESKRSKVGVHTASPGMVLTDL 383 (512)
Q Consensus 333 ~~a~~~----~---------~p~~~~Y~aSKaAl~~l~~s-La~El~~~GIrVn~V~PG~V~T~~ 383 (512)
.. ... . .|....|+.+|++.+.+++. ++ .+..+.|+.+-.|.
T Consensus 138 ~~-~~g~~~~~~~~~~~E~~~p~~~~Y~~sK~~~E~~~~~s~~--------~~~ilR~~~v~gp~ 193 (333)
T 2q1w_A 138 AL-CYGVKPIQQPVRLDHPRNPANSSYAISKSANEDYLEYSGL--------DFVTFRLANVVGPR 193 (333)
T ss_dssp GG-GGCSCCCSSSBCTTSCCCCTTCHHHHHHHHHHHHHHHHTC--------CEEEEEESEEESTT
T ss_pred HH-HhCCCcccCCCCcCCCCCCCCCchHHHHHHHHHHHHhhhC--------CeEEEeeceEECcC
Confidence 63 222 1 23227899999999999887 65 45567776665543
|
| >1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=5.1e-17 Score=164.86 Aligned_cols=168 Identities=14% Similarity=0.187 Sum_probs=129.0
Q ss_pred EEEEECCCChHHHHHHHHHHHC---C---CEEEEEEcChhhH-HHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEcc
Q 010380 179 NVVITGSTRGLGKALAREFLLS---G---DRVVVASRSSESV-RMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACD 251 (512)
Q Consensus 179 ~vLVTGassGIG~aiA~~La~~---G---a~Vvl~~R~~~~l-~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~D 251 (512)
+|+||||+|+||.+++++|+++ | ++|++++|+.... .+..+++. .+.++.++.+|
T Consensus 2 ~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~V~~~~r~~~~~~~~~~~~~~------------------~~~~~~~~~~D 63 (337)
T 1r6d_A 2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVD------------------ADPRLRFVHGD 63 (337)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGGGGGGT------------------TCTTEEEEECC
T ss_pred eEEEECCccHHHHHHHHHHHhhhcCCCCceEEEEEECCCccCchhhhhhcc------------------cCCCeEEEEcC
Confidence 5899999999999999999997 8 9999999964210 00000000 12468889999
Q ss_pred CCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeec
Q 010380 252 VCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD 331 (512)
Q Consensus 252 ltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vS 331 (512)
++|++++++++ .++|+||||||... .+.+.++++..+++|+.++.++++++.+. +.++||++|
T Consensus 64 l~d~~~~~~~~-------~~~d~Vih~A~~~~-----~~~~~~~~~~~~~~Nv~~~~~l~~a~~~~-----~~~~~v~~S 126 (337)
T 1r6d_A 64 IRDAGLLAREL-------RGVDAIVHFAAESH-----VDRSIAGASVFTETNVQGTQTLLQCAVDA-----GVGRVVHVS 126 (337)
T ss_dssp TTCHHHHHHHT-------TTCCEEEECCSCCC-----HHHHHHCCHHHHHHHTHHHHHHHHHHHHT-----TCCEEEEEE
T ss_pred CCCHHHHHHHh-------cCCCEEEECCCccC-----chhhhhCHHHHHHHHHHHHHHHHHHHHHc-----CCCEEEEec
Confidence 99998887765 47999999999743 11234567789999999999999998764 246899999
Q ss_pred CCCCCC----------CCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcc
Q 010380 332 GAGSGG----------SSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLL 384 (512)
Q Consensus 332 S~~a~~----------~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~ 384 (512)
|..... .+......|+.||++.+.+++.++.++ |++++++.||.|.+|..
T Consensus 127 S~~vyg~~~~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---g~~~~ilrp~~v~G~~~ 186 (337)
T 1r6d_A 127 TNQVYGSIDSGSWTESSPLEPNSPYAASKAGSDLVARAYHRTY---GLDVRITRCCNNYGPYQ 186 (337)
T ss_dssp EGGGGCCCSSSCBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH---CCCEEEEEECEEECTTC
T ss_pred chHHhCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHH---CCCEEEEEeeeeECCCC
Confidence 862111 123456789999999999999999886 79999999999998864
|
| >2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.4e-17 Score=157.80 Aligned_cols=151 Identities=17% Similarity=0.208 Sum_probs=121.0
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGD--RVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga--~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
.+++++||||+|+||.+++++|+++|+ +|++++|++++ ...++.++.+|++
T Consensus 4 ~~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~~~~---------------------------~~~~~~~~~~D~~ 56 (215)
T 2a35_A 4 TPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA---------------------------EHPRLDNPVGPLA 56 (215)
T ss_dssp CCCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC---------------------------CCTTEECCBSCHH
T ss_pred CCceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCCCcc---------------------------cCCCceEEecccc
Confidence 467899999999999999999999998 99999998654 0135677889999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
|++++.+++ +|+||||||.... +.+++++.+++|+.++.++++++.+. +.++||++||.
T Consensus 57 ~~~~~~~~~---------~d~vi~~a~~~~~-------~~~~~~~~~~~n~~~~~~l~~~~~~~-----~~~~~v~~Ss~ 115 (215)
T 2a35_A 57 ELLPQLDGS---------IDTAFCCLGTTIK-------EAGSEEAFRAVDFDLPLAVGKRALEM-----GARHYLVVSAL 115 (215)
T ss_dssp HHGGGCCSC---------CSEEEECCCCCHH-------HHSSHHHHHHHHTHHHHHHHHHHHHT-----TCCEEEEECCT
T ss_pred CHHHHHHhh---------hcEEEECeeeccc-------cCCCHHHHHHhhHHHHHHHHHHHHHc-----CCCEEEEECCc
Confidence 888766553 8999999997431 23567889999999999998887542 35689999987
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeE-EEEEeCCcccCCcc
Q 010380 334 GSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVG-VHTASPGMVLTDLL 384 (512)
Q Consensus 334 ~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIr-Vn~V~PG~V~T~~~ 384 (512)
. ... +....|+.+|++++.+.+. .|++ +++++||++.++..
T Consensus 116 ~-~~~--~~~~~y~~sK~~~e~~~~~-------~~~~~~~~vrp~~v~g~~~ 157 (215)
T 2a35_A 116 G-ADA--KSSIFYNRVKGELEQALQE-------QGWPQLTIARPSLLFGPRE 157 (215)
T ss_dssp T-CCT--TCSSHHHHHHHHHHHHHTT-------SCCSEEEEEECCSEESTTS
T ss_pred c-cCC--CCccHHHHHHHHHHHHHHH-------cCCCeEEEEeCceeeCCCC
Confidence 3 322 3456899999999988764 3798 99999999998754
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2e-16 Score=163.65 Aligned_cols=171 Identities=15% Similarity=0.062 Sum_probs=131.3
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSG-DRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~G-a~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
.+++++|+||||+|+||.+++++|+++| ++|++++|+.+...+ .+. ...++.++.+|+
T Consensus 29 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~---~l~------------------~~~~v~~~~~Dl 87 (377)
T 2q1s_A 29 KLANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKI---NVP------------------DHPAVRFSETSI 87 (377)
T ss_dssp GGTTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTTCCGG---GSC------------------CCTTEEEECSCT
T ss_pred HhCCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCCCchh---hcc------------------CCCceEEEECCC
Confidence 4678899999999999999999999999 999999998653210 000 134688899999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|+++++++++ ++|+|||+||.... ..+.++++..+++|+.++.++++++.. ..+.++||++||
T Consensus 88 ~d~~~l~~~~~-------~~d~Vih~A~~~~~-----~~~~~~~~~~~~~nv~~~~~ll~a~~~----~~~~~~~V~~SS 151 (377)
T 2q1s_A 88 TDDALLASLQD-------EYDYVFHLATYHGN-----QSSIHDPLADHENNTLTTLKLYERLKH----FKRLKKVVYSAA 151 (377)
T ss_dssp TCHHHHHHCCS-------CCSEEEECCCCSCH-----HHHHHCHHHHHHHHTHHHHHHHHHHTT----CSSCCEEEEEEE
T ss_pred CCHHHHHHHhh-------CCCEEEECCCccCc-----hhhhhCHHHHHHHHHHHHHHHHHHHHH----hCCCCeEEEeCC
Confidence 99988776553 79999999997531 123456788999999999999888732 213468999998
Q ss_pred CCCC------------CC---CC-CCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcc
Q 010380 333 AGSG------------GS---ST-PLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLL 384 (512)
Q Consensus 333 ~~a~------------~~---~~-p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~ 384 (512)
.... .. +. .....|+.+|.+.+.+++.++.++ |++++++.||.|..+..
T Consensus 152 ~~vyg~~~~~~~~~~E~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~ 216 (377)
T 2q1s_A 152 GCSIAEKTFDDAKATEETDIVSLHNNDSPYSMSKIFGEFYSVYYHKQH---QLPTVRARFQNVYGPGE 216 (377)
T ss_dssp C--------------CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHH---CCCEEEEEECCEECTTC
T ss_pred HHHcCCCCCCCcCcccccccccccCCCCchHHHHHHHHHHHHHHHHHh---CCCEEEEeeccEECCCC
Confidence 6311 00 22 345789999999999999999876 79999999999988764
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.2e-16 Score=160.10 Aligned_cols=162 Identities=12% Similarity=0.026 Sum_probs=127.8
Q ss_pred CCEEEEECCCChHHHHHHHHHHHC--CCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCC
Q 010380 177 PRNVVITGSTRGLGKALAREFLLS--GDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCE 254 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~--Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd 254 (512)
+++|+||||+|+||.+++++|+++ |++|++++|+....+ +. .++.++.+|++|
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~-----~~--------------------~~~~~~~~D~~d 56 (312)
T 2yy7_A 2 NPKILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLNTD-----VV--------------------NSGPFEVVNALD 56 (312)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHHHCGGGEEEEESCCCSCH-----HH--------------------HSSCEEECCTTC
T ss_pred CceEEEECCccHHHHHHHHHHHHhCCCCEEEEEcCCCcccc-----cc--------------------CCCceEEecCCC
Confidence 467999999999999999999999 899999999865421 11 134578999999
Q ss_pred hhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCC
Q 010380 255 PADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAG 334 (512)
Q Consensus 255 ~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~ 334 (512)
.+++++++++. ++|+|||+||.... ...++.+..+++|+.++.++++++.+ . +.+++|++||..
T Consensus 57 ~~~~~~~~~~~-----~~d~vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~----~-~~~~~v~~SS~~ 120 (312)
T 2yy7_A 57 FNQIEHLVEVH-----KITDIYLMAALLSA------TAEKNPAFAWDLNMNSLFHVLNLAKA----K-KIKKIFWPSSIA 120 (312)
T ss_dssp HHHHHHHHHHT-----TCCEEEECCCCCHH------HHHHCHHHHHHHHHHHHHHHHHHHHT----T-SCSEEECCEEGG
T ss_pred HHHHHHHHhhc-----CCCEEEECCccCCC------chhhChHHHHHHHHHHHHHHHHHHHH----c-CCCEEEEeccHH
Confidence 99988887643 69999999997431 12356788999999999999888754 2 346999999863
Q ss_pred CCCCC------------CCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCc
Q 010380 335 SGGSS------------TPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDL 383 (512)
Q Consensus 335 a~~~~------------~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~ 383 (512)
.... ......|+.+|.+.+.+++.++.++ |++++++.||.+-.+.
T Consensus 121 -~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lrp~~v~g~~ 177 (312)
T 2yy7_A 121 -VFGPTTPKENTPQYTIMEPSTVYGISKQAGERWCEYYHNIY---GVDVRSIRYPGLISWS 177 (312)
T ss_dssp -GCCTTSCSSSBCSSCBCCCCSHHHHHHHHHHHHHHHHHHHH---CCEEECEEECEEECSS
T ss_pred -HhCCCCCCCCccccCcCCCCchhHHHHHHHHHHHHHHHHhc---CCcEEEEeCCeEecCC
Confidence 2211 1235689999999999999998876 7999999999988754
|
| >2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=8.3e-17 Score=164.95 Aligned_cols=167 Identities=13% Similarity=0.122 Sum_probs=125.8
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 175 AGPRNVVITGSTRGLGKALAREFLLSG-DRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 175 l~gk~vLVTGassGIG~aiA~~La~~G-a~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
+++++|+||||+|+||.+++++|+++| ++|++++|+..... ...+ . .+. +.+|++
T Consensus 44 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~--~~~~-------------------~--~~~-~~~d~~ 99 (357)
T 2x6t_A 44 IEGRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK--FVNL-------------------V--DLN-IADYMD 99 (357)
T ss_dssp ----CEEEETTTSHHHHHHHHHHHHTTCCCEEEEECCSSGGG--GGGT-------------------T--TSC-CSEEEE
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCcEEEEEecCCCcch--hhcc-------------------c--Cce-EeeecC
Confidence 567889999999999999999999999 89999999865421 0000 0 111 678999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
|.+.++++++. ..++++|+|||+||... . +.++++..+++|+.++.++++++.+. +. +||++||.
T Consensus 100 ~~~~~~~~~~~--~~~~~~d~Vih~A~~~~-~------~~~~~~~~~~~n~~~~~~ll~a~~~~-----~~-r~V~~SS~ 164 (357)
T 2x6t_A 100 KEDFLIQIMAG--EEFGDVEAIFHEGACSS-T------TEWDGKYMMDNNYQYSKELLHYCLER-----EI-PFLYASSA 164 (357)
T ss_dssp HHHHHHHHHTT--CCCSSCCEEEECCSCCC-T------TCCCHHHHHHHTHHHHHHHHHHHHHH-----TC-CEEEEEEG
T ss_pred cHHHHHHHHhh--cccCCCCEEEECCcccC-C------ccCCHHHHHHHHHHHHHHHHHHHHHc-----CC-eEEEEcch
Confidence 98888877653 13568999999999754 1 23457889999999999999998763 34 89999987
Q ss_pred CCCCCCCC-----------CcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcc
Q 010380 334 GSGGSSTP-----------LTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLL 384 (512)
Q Consensus 334 ~a~~~~~p-----------~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~ 384 (512)
. .....+ ....|+.+|.+.+.+++.++.++ |++++++.||.|.+|..
T Consensus 165 ~-v~g~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---g~~~~ilRp~~v~Gp~~ 222 (357)
T 2x6t_A 165 A-TYGGRTSDFIESREYEKPLNVFGYSKFLFDEYVRQILPEA---NSQIVGFRYFNVYGPRE 222 (357)
T ss_dssp G-GGCSCSSCCCSSGGGCCCSSHHHHHHHHHHHHHHHHGGGC---SSCEEEEEECEEESSSC
T ss_pred H-HhCCCCCCCcCCcCCCCCCChhHHHHHHHHHHHHHHHHHc---CCCEEEEecCeEECCCC
Confidence 3 222211 25689999999999999998764 79999999999988753
|
| >1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 | Back alignment and structure |
|---|
Probab=99.66 E-value=5.1e-16 Score=173.66 Aligned_cols=178 Identities=18% Similarity=0.198 Sum_probs=130.1
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
+.+++|+||||||+|+||.+++++|+++|++|++++|+.....+..+++... .+.++.++.+|+
T Consensus 7 ~~~~~~~ilVTGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~----------------~~~~v~~v~~Dl 70 (699)
T 1z45_A 7 SESTSKIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVL----------------TKHHIPFYEVDL 70 (699)
T ss_dssp ----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHHHHH----------------HTSCCCEEECCT
T ss_pred cccCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCcchHHHHHHHhhc----------------cCCceEEEEcCC
Confidence 3467899999999999999999999999999999999765433333333221 124577899999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|+++++++++.. ++|+||||||... ... ..+..+..+++|+.++.++++++.. . +.++||++||
T Consensus 71 ~d~~~l~~~~~~~-----~~D~Vih~A~~~~-~~~----~~~~~~~~~~~Nv~gt~~ll~a~~~----~-~~~~iV~~SS 135 (699)
T 1z45_A 71 CDRKGLEKVFKEY-----KIDSVIHFAGLKA-VGE----STQIPLRYYHNNILGTVVLLELMQQ----Y-NVSKFVFSSS 135 (699)
T ss_dssp TCHHHHHHHHHHS-----CCCEEEECCSCCC-HHH----HHHSHHHHHHHHHHHHHHHHHHHHH----H-TCCEEEEEEE
T ss_pred CCHHHHHHHHHhC-----CCCEEEECCcccC-cCc----cccCHHHHHHHHHHHHHHHHHHHHH----c-CCCEEEEECc
Confidence 9999988877643 7999999999753 111 1233467899999999998776543 2 3569999998
Q ss_pred CCCCCC--------------CCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCC
Q 010380 333 AGSGGS--------------STPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTD 382 (512)
Q Consensus 333 ~~a~~~--------------~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~ 382 (512)
...... +......|+.||++++.+++.++.+. ..|+++.++.|+.|-.+
T Consensus 136 ~~vyg~~~~~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~-~~g~~~~ilR~~~vyG~ 198 (699)
T 1z45_A 136 ATVYGDATRFPNMIPIPEECPLGPTNPYGHTKYAIENILNDLYNSD-KKSWKFAILRYFNPIGA 198 (699)
T ss_dssp GGGGCCGGGSTTCCSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHS-TTSCEEEEEEECEEECC
T ss_pred HHHhCCCccccccCCccccCCCCCCChHHHHHHHHHHHHHHHHHhc-cCCCcEEEEEeccccCC
Confidence 632110 11234689999999999999998876 45899999999877543
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A | Back alignment and structure |
|---|
Probab=99.66 E-value=3.8e-16 Score=158.45 Aligned_cols=163 Identities=11% Similarity=0.031 Sum_probs=124.4
Q ss_pred CEEEEECCCChHHHHHHHHHHHC-CCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCCh-
Q 010380 178 RNVVITGSTRGLGKALAREFLLS-GDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEP- 255 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~-Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~- 255 (512)
++|+||||+|+||.+++++|+++ |++|++++|+.++.+... ...++.++.+|++|.
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~----------------------~~~~~~~~~~D~~~~~ 58 (345)
T 2bll_A 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFL----------------------NHPHFHFVEGDISIHS 58 (345)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGT----------------------TCTTEEEEECCTTTCS
T ss_pred CeEEEECCCcHHHHHHHHHHHHhCCCEEEEEeCCcchHHHhh----------------------cCCCeEEEeccccCcH
Confidence 46899999999999999999998 899999999876542110 124688899999984
Q ss_pred hhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCC
Q 010380 256 ADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGS 335 (512)
Q Consensus 256 ~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a 335 (512)
+.++++++ .+|+|||+||...+ . ...++++..+++|+.++.++++++.. . + ++||++||..
T Consensus 59 ~~~~~~~~-------~~d~vih~A~~~~~-~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~-~-~~~v~~SS~~- 119 (345)
T 2bll_A 59 EWIEYHVK-------KCDVVLPLVAIATP-I----EYTRNPLRVFELDFEENLRIIRYCVK----Y-R-KRIIFPSTSE- 119 (345)
T ss_dssp HHHHHHHH-------HCSEEEECBCCCCH-H----HHHHSHHHHHHHHTHHHHHHHHHHHH----T-T-CEEEEECCGG-
T ss_pred HHHHhhcc-------CCCEEEEcccccCc-c----chhcCHHHHHHHHHHHHHHHHHHHHH----h-C-CeEEEEecHH-
Confidence 55666554 47999999997531 1 11345678999999999998887754 2 3 6999999863
Q ss_pred CCCCC------------------CCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcc
Q 010380 336 GGSST------------------PLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLL 384 (512)
Q Consensus 336 ~~~~~------------------p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~ 384 (512)
..... .....|+.+|.+.+.+++.++.+. |++++++.||.|..+..
T Consensus 120 v~g~~~~~~~~e~~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~ilrp~~v~G~~~ 183 (345)
T 2bll_A 120 VYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKE---GLQFTLFRPFNWMGPRL 183 (345)
T ss_dssp GGBTCCCSSBCTTTCCCBCCCTTCGGGHHHHHHHHHHHHHHHHHHHH---CCCEEEEEECSEECSSC
T ss_pred HcCCCCCCCcCCcccccccCcccCcccccHHHHHHHHHHHHHHHHhc---CCCEEEEcCCcccCCCc
Confidence 21110 112379999999999999999876 79999999999987753
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A | Back alignment and structure |
|---|
Probab=99.66 E-value=2.3e-16 Score=158.52 Aligned_cols=154 Identities=17% Similarity=0.140 Sum_probs=94.0
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChh
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPA 256 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~ 256 (512)
+|+|+||||+|+||.+++++|+++|++|++++|+.+. . + ++.+|++|++
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~---------~--------------------~--~~~~Dl~d~~ 50 (315)
T 2ydy_A 2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRAR---------P--------------------K--FEQVNLLDSN 50 (315)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC------------------------------------------------
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCCCC---------C--------------------C--eEEecCCCHH
Confidence 5789999999999999999999999999999986432 0 1 4778999999
Q ss_pred hHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCC
Q 010380 257 DVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSG 336 (512)
Q Consensus 257 sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~ 336 (512)
++.++++.. ++|+||||||.... +.+.+++++.+++|+.++.++++++.+. +++||++||.. .
T Consensus 51 ~~~~~~~~~-----~~d~vih~A~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~a~~~~------~~~~v~~SS~~-v 113 (315)
T 2ydy_A 51 AVHHIIHDF-----QPHVIVHCAAERRP-----DVVENQPDAASQLNVDASGNLAKEAAAV------GAFLIYISSDY-V 113 (315)
T ss_dssp -CHHHHHHH-----CCSEEEECC------------------------CHHHHHHHHHHHHH------TCEEEEEEEGG-G
T ss_pred HHHHHHHhh-----CCCEEEECCcccCh-----hhhhcCHHHHHHHHHHHHHHHHHHHHHc------CCeEEEEchHH-H
Confidence 988887754 79999999997541 2345678899999999999999998763 24899999873 2
Q ss_pred CCC----------CCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccC
Q 010380 337 GSS----------TPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLT 381 (512)
Q Consensus 337 ~~~----------~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T 381 (512)
..+ ..+...|+.+|++.+.+++.++.++ ..||++.|. |+..+
T Consensus 114 ~~~~~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~~lR~~~v~-G~~~~ 165 (315)
T 2ydy_A 114 FDGTNPPYREEDIPAPLNLYGKTKLDGEKAVLENNLGA--AVLRIPILY-GEVEK 165 (315)
T ss_dssp SCSSSCSBCTTSCCCCCSHHHHHHHHHHHHHHHHCTTC--EEEEECSEE-CSCSS
T ss_pred cCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHhCCCe--EEEeeeeee-CCCCc
Confidence 222 2446789999999999999875443 245555555 55554
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.9e-16 Score=160.69 Aligned_cols=166 Identities=12% Similarity=0.066 Sum_probs=129.0
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHC-CCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLS-GDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~-Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
.+.+++|+||||+|+||.+++++|+++ |++|++++|+.++..... ...++.++.+|+
T Consensus 21 ~m~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~----------------------~~~~v~~~~~Dl 78 (372)
T 3slg_A 21 SMKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLV----------------------KHERMHFFEGDI 78 (372)
T ss_dssp --CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGGGG----------------------GSTTEEEEECCT
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhhhc----------------------cCCCeEEEeCcc
Confidence 466789999999999999999999998 999999999876542211 124688999999
Q ss_pred C-ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeec
Q 010380 253 C-EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD 331 (512)
Q Consensus 253 t-d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vS 331 (512)
+ |.+++.++++ .+|+|||+||...+ ....++.+..+++|+.++.++++++... + .++|++|
T Consensus 79 ~~d~~~~~~~~~-------~~d~Vih~A~~~~~-----~~~~~~~~~~~~~nv~~~~~ll~a~~~~-----~-~~~v~~S 140 (372)
T 3slg_A 79 TINKEWVEYHVK-------KCDVILPLVAIATP-----ATYVKQPLRVFELDFEANLPIVRSAVKY-----G-KHLVFPS 140 (372)
T ss_dssp TTCHHHHHHHHH-------HCSEEEECBCCCCH-----HHHHHCHHHHHHHHTTTTHHHHHHHHHH-----T-CEEEEEC
T ss_pred CCCHHHHHHHhc-------cCCEEEEcCccccH-----HHHhhCHHHHHHHHHHHHHHHHHHHHHh-----C-CcEEEeC
Confidence 9 9998888776 48999999997541 1123456788999999999998887543 3 6899999
Q ss_pred CCCCCCCCC------------------CCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcc
Q 010380 332 GAGSGGSST------------------PLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLL 384 (512)
Q Consensus 332 S~~a~~~~~------------------p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~ 384 (512)
|.. ..... .....|+.||.+.+.+++.++.+ |++++++.|+.|-.|..
T Consensus 141 S~~-vyg~~~~~~~~e~~~~~~~~p~~~p~~~Y~~sK~~~E~~~~~~~~~----g~~~~ilRp~~v~G~~~ 206 (372)
T 3slg_A 141 TSE-VYGMCADEQFDPDASALTYGPINKPRWIYACSKQLMDRVIWGYGME----GLNFTLFRPFNWIGPGL 206 (372)
T ss_dssp CGG-GGBSCCCSSBCTTTCCEEECCTTCTTHHHHHHHHHHHHHHHHHHTT----TCEEEEEEECSEECSSC
T ss_pred cHH-HhCCCCCCCCCccccccccCCCCCCCCcHHHHHHHHHHHHHHHHHC----CCCEEEEccccccCCCc
Confidence 862 21110 23347999999999999988866 79999999999987653
|
| >2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=5.2e-16 Score=158.13 Aligned_cols=169 Identities=20% Similarity=0.213 Sum_probs=123.1
Q ss_pred cCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEcc
Q 010380 172 HCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACD 251 (512)
Q Consensus 172 ~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~D 251 (512)
..++++++|+||||+|+||.+++++|+++|++|++++|+........+++ ....++.++.+|
T Consensus 22 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~------------------~~~~~~~~~~~D 83 (343)
T 2b69_A 22 HMEKDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHW------------------IGHENFELINHD 83 (343)
T ss_dssp -----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGTGGG------------------TTCTTEEEEECC
T ss_pred ccccCCCEEEEEcCccHHHHHHHHHHHHCCCEEEEEeCCCccchhhhhhh------------------ccCCceEEEeCc
Confidence 34567899999999999999999999999999999999754211100000 012467889999
Q ss_pred CCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeec
Q 010380 252 VCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD 331 (512)
Q Consensus 252 ltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vS 331 (512)
++|.. +..+|+|||+||.... .. ..++.+..+++|+.++.++++++... +.++|++|
T Consensus 84 ~~~~~------------~~~~d~vih~A~~~~~-~~----~~~~~~~~~~~n~~~~~~l~~a~~~~------~~~~v~~S 140 (343)
T 2b69_A 84 VVEPL------------YIEVDQIYHLASPASP-PN----YMYNPIKTLKTNTIGTLNMLGLAKRV------GARLLLAS 140 (343)
T ss_dssp TTSCC------------CCCCSEEEECCSCCSH-HH----HTTCHHHHHHHHHHHHHHHHHHHHHH------TCEEEEEE
T ss_pred cCChh------------hcCCCEEEECccccCc-hh----hhhCHHHHHHHHHHHHHHHHHHHHHh------CCcEEEEC
Confidence 98863 3579999999997531 11 11345678999999999999988653 24899999
Q ss_pred CCCCCC---------------CCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcc
Q 010380 332 GAGSGG---------------SSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLL 384 (512)
Q Consensus 332 S~~a~~---------------~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~ 384 (512)
|..... .+......|+.||++.+.+++.++.+. |++++++.||.|..|..
T Consensus 141 S~~v~g~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilrp~~v~G~~~ 205 (343)
T 2b69_A 141 TSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQE---GVEVRVARIFNTFGPRM 205 (343)
T ss_dssp EGGGGBSCSSSSBCTTCCCBCCSSSTTHHHHHHHHHHHHHHHHHHHHH---CCCEEEEEECCEECTTC
T ss_pred cHHHhCCCCCCCCcccccccCCCCCCCCchHHHHHHHHHHHHHHHHHh---CCcEEEEEEcceeCcCC
Confidence 863211 122345679999999999999998876 79999999999988753
|
| >3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.4e-15 Score=152.67 Aligned_cols=154 Identities=15% Similarity=0.159 Sum_probs=120.4
Q ss_pred EEEEECCCChHHHHHHHHHHHC--CCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChh
Q 010380 179 NVVITGSTRGLGKALAREFLLS--GDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPA 256 (512)
Q Consensus 179 ~vLVTGassGIG~aiA~~La~~--Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~ 256 (512)
+|+||||+|+||.+++++|+++ |++|++++|+.... ..+.++.+|++|++
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~----------------------------~~~~~~~~D~~d~~ 52 (317)
T 3ajr_A 1 MILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRDT----------------------------GGIKFITLDVSNRD 52 (317)
T ss_dssp CEEEESTTSTTHHHHHHHHHHHHCGGGEEEEESSCCCC----------------------------TTCCEEECCTTCHH
T ss_pred CEEEEcCCcHHHHHHHHHHHHhcCCCEEEEecCCCccc----------------------------cCceEEEecCCCHH
Confidence 3799999999999999999998 89999999875431 02456889999999
Q ss_pred hHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCC
Q 010380 257 DVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSG 336 (512)
Q Consensus 257 sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~ 336 (512)
++.++++. .++|+|||+||.... ...++++..+++|+.++.++++++.+ . +.++||++||.. .
T Consensus 53 ~~~~~~~~-----~~~d~vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~a~~~----~-~~~~~v~~SS~~-~ 115 (317)
T 3ajr_A 53 EIDRAVEK-----YSIDAIFHLAGILSA------KGEKDPALAYKVNMNGTYNILEAAKQ----H-RVEKVVIPSTIG-V 115 (317)
T ss_dssp HHHHHHHH-----TTCCEEEECCCCCHH------HHHHCHHHHHHHHHHHHHHHHHHHHH----T-TCCEEEEEEEGG-G
T ss_pred HHHHHHhh-----cCCcEEEECCcccCC------ccccChHHHhhhhhHHHHHHHHHHHH----c-CCCEEEEecCHH-H
Confidence 98888764 279999999997431 12356788999999999999988754 2 356999999873 2
Q ss_pred CCCC------------CCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCccc
Q 010380 337 GSST------------PLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVL 380 (512)
Q Consensus 337 ~~~~------------p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~ 380 (512)
.... .+...|+.||.+.+.+++.++.+. |++++++.|+.+-
T Consensus 116 ~~~~~~~~~~~e~~~~~p~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~lR~~~~~ 168 (317)
T 3ajr_A 116 FGPETPKNKVPSITITRPRTMFGVTKIAAELLGQYYYEKF---GLDVRSLRYPGII 168 (317)
T ss_dssp CCTTSCSSSBCSSSCCCCCSHHHHHHHHHHHHHHHHHHHH---CCEEEEEEECEEE
T ss_pred hCCCCCCCCccccccCCCCchHHHHHHHHHHHHHHHHHhc---CCeEEEEecCcEe
Confidence 2211 135789999999999999988775 7999999865443
|
| >1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=3e-15 Score=150.60 Aligned_cols=155 Identities=15% Similarity=0.113 Sum_probs=121.7
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCCh
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEP 255 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~ 255 (512)
.+++|+||||+|+||.+++++|+++|++|++++|+. .+|++|.
T Consensus 2 ~~~~ilVtGatG~iG~~l~~~L~~~g~~v~~~~r~~-------------------------------------~~D~~d~ 44 (321)
T 1e6u_A 2 AKQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRD-------------------------------------ELNLLDS 44 (321)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTT-------------------------------------TCCTTCH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhCCCeEEEEecCc-------------------------------------cCCccCH
Confidence 357899999999999999999999999999887752 1599999
Q ss_pred hhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCC
Q 010380 256 ADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGS 335 (512)
Q Consensus 256 ~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a 335 (512)
+++.++++.. ++|+|||+||.... .....++.+..+++|+.++.++++++... +.+++|++||...
T Consensus 45 ~~~~~~~~~~-----~~d~vih~a~~~~~----~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-----~~~~~v~~SS~~v 110 (321)
T 1e6u_A 45 RAVHDFFASE-----RIDQVYLAAAKVGG----IVANNTYPADFIYQNMMIESNIIHAAHQN-----DVNKLLFLGSSCI 110 (321)
T ss_dssp HHHHHHHHHH-----CCSEEEECCCCCCC----HHHHHHCHHHHHHHHHHHHHHHHHHHHHT-----TCCEEEEECCGGG
T ss_pred HHHHHHHHhc-----CCCEEEEcCeecCC----cchhhhCHHHHHHHHHHHHHHHHHHHHHh-----CCCeEEEEccHHH
Confidence 9988887654 69999999997431 11234456788999999999998887552 3468999998632
Q ss_pred CC---------------CCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcc
Q 010380 336 GG---------------SSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLL 384 (512)
Q Consensus 336 ~~---------------~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~ 384 (512)
.. ...|....|+.+|.+.+.+++.++.+. |++++++.||.|-.+..
T Consensus 111 yg~~~~~~~~E~~~~~~~~~p~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilrp~~v~G~~~ 171 (321)
T 1e6u_A 111 YPKLAKQPMAESELLQGTLEPTNEPYAIAKIAGIKLCESYNRQY---GRDYRSVMPTNLYGPHD 171 (321)
T ss_dssp SCTTCCSSBCGGGTTSSCCCGGGHHHHHHHHHHHHHHHHHHHHH---CCEEEEEEECEEESTTC
T ss_pred cCCCCCCCcCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHh---CCCEEEEEeCCcCCcCC
Confidence 11 111123589999999999999998876 79999999999987754
|
| >2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.5e-15 Score=149.03 Aligned_cols=144 Identities=17% Similarity=0.071 Sum_probs=110.6
Q ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhhH
Q 010380 179 NVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPADV 258 (512)
Q Consensus 179 ~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~sv 258 (512)
+++||||+|+||.+++++|+ +|++|++++|+++.. .+ +.+|++|++++
T Consensus 2 ~ilVtGatG~iG~~l~~~L~-~g~~V~~~~r~~~~~--------------------------~~-----~~~Dl~~~~~~ 49 (273)
T 2ggs_A 2 RTLITGASGQLGIELSRLLS-ERHEVIKVYNSSEIQ--------------------------GG-----YKLDLTDFPRL 49 (273)
T ss_dssp CEEEETTTSHHHHHHHHHHT-TTSCEEEEESSSCCT--------------------------TC-----EECCTTSHHHH
T ss_pred EEEEECCCChhHHHHHHHHh-cCCeEEEecCCCcCC--------------------------CC-----ceeccCCHHHH
Confidence 58999999999999999999 589999999986310 01 78999999999
Q ss_pred HHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCC
Q 010380 259 QKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGS 338 (512)
Q Consensus 259 ~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~~~ 338 (512)
+++++.+ ++|+||||||.... +.+.+++++.+++|+.++.++++++.+ . +++||++||.. ...
T Consensus 50 ~~~~~~~-----~~d~vi~~a~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~----~--~~~iv~~SS~~-~~~ 112 (273)
T 2ggs_A 50 EDFIIKK-----RPDVIINAAAMTDV-----DKCEIEKEKAYKINAEAVRHIVRAGKV----I--DSYIVHISTDY-VFD 112 (273)
T ss_dssp HHHHHHH-----CCSEEEECCCCCCH-----HHHHHCHHHHHHHHTHHHHHHHHHHHH----T--TCEEEEEEEGG-GSC
T ss_pred HHHHHhc-----CCCEEEECCcccCh-----hhhhhCHHHHHHHhHHHHHHHHHHHHH----h--CCeEEEEecce-eEc
Confidence 9888765 79999999997531 233567899999999999999998864 2 35999999873 332
Q ss_pred CCC----------CcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEe
Q 010380 339 STP----------LTAVYGSTKCGLRQLQASLFKESKRSKVGVHTAS 375 (512)
Q Consensus 339 ~~p----------~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~ 375 (512)
+.+ ....|+.+|++++.+++. +.-..||++.|.
T Consensus 113 ~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~----~~~~~iR~~~v~ 155 (273)
T 2ggs_A 113 GEKGNYKEEDIPNPINYYGLSKLLGETFALQ----DDSLIIRTSGIF 155 (273)
T ss_dssp SSSCSBCTTSCCCCSSHHHHHHHHHHHHHCC----TTCEEEEECCCB
T ss_pred CCCCCcCCCCCCCCCCHHHHHHHHHHHHHhC----CCeEEEeccccc
Confidence 222 357899999999999887 222344544444
|
| >4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.3e-15 Score=161.21 Aligned_cols=184 Identities=22% Similarity=0.270 Sum_probs=127.5
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHC---CCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEE
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLS---GDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIA 249 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~---Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~ 249 (512)
...++|+|+||||+|+||.+++++|+++ |++|++++|+.+... ..+++.+.+....... ..........++.++.
T Consensus 69 ~~~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~V~~l~R~~~~~~-~~~~l~~~~~~~~~~~-~~~~~~~~~~~v~~v~ 146 (478)
T 4dqv_A 69 PSPELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDED-ARRRLEKTFDSGDPEL-LRHFKELAADRLEVVA 146 (478)
T ss_dssp CCSCCCEEEEECTTSHHHHHHHHHHHHHSCTTCEEEEEECSSSHHH-HHHHHHGGGCSSCHHH-HHHHHHHHTTTEEEEE
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHhcCCCCCEEEEEECCCCcHH-HHHHHHHHHHhcchhh-hhhhhhhccCceEEEE
Confidence 3467899999999999999999999999 999999999876542 2333332211000000 0000000235789999
Q ss_pred ccCCCh------hhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCC
Q 010380 250 CDVCEP------ADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPK 323 (512)
Q Consensus 250 ~Dltd~------~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~ 323 (512)
+|++++ ++++++++ ++|+||||||... . +.++..+++|+.++.++++++.. . +
T Consensus 147 ~Dl~~~~~gld~~~~~~~~~-------~~D~Vih~Aa~~~-~--------~~~~~~~~~Nv~gt~~ll~aa~~----~-~ 205 (478)
T 4dqv_A 147 GDKSEPDLGLDQPMWRRLAE-------TVDLIVDSAAMVN-A--------FPYHELFGPNVAGTAELIRIALT----T-K 205 (478)
T ss_dssp CCTTSGGGGCCHHHHHHHHH-------HCCEEEECCSSCS-B--------SSCCEEHHHHHHHHHHHHHHHTS----S-S
T ss_pred eECCCcccCCCHHHHHHHHc-------CCCEEEECccccC-C--------cCHHHHHHHHHHHHHHHHHHHHh----C-C
Confidence 999954 45555443 5899999999864 1 23356789999999999887643 2 3
Q ss_pred CCeEEeecCCCCCCCCCC---------------------CcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCC
Q 010380 324 GGHIFNMDGAGSGGSSTP---------------------LTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTD 382 (512)
Q Consensus 324 ~g~IV~vSS~~a~~~~~p---------------------~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~ 382 (512)
.++||++||........+ ....|+.||.+.+.+++.++.+. |++++++.||.|-.+
T Consensus 206 ~~~~V~iSS~~v~~~~~~~~~~E~~~~~p~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ivRpg~v~G~ 282 (478)
T 4dqv_A 206 LKPFTYVSTADVGAAIEPSAFTEDADIRVISPTRTVDGGWAGGYGTSKWAGEVLLREANDLC---ALPVAVFRCGMILAD 282 (478)
T ss_dssp CCCEEEEEEGGGGTTSCTTTCCSSSCHHHHCCEEECCTTSEECHHHHHHHHHHHHHHHHHHH---CCCEEEEEECEEECC
T ss_pred CCeEEEEeehhhcCccCCCCcCCcccccccCcccccccccccchHHHHHHHHHHHHHHHHHh---CCCeEEEECceeeCC
Confidence 458999998632111111 01349999999999999998876 799999999999765
|
| >1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.59 E-value=3.6e-15 Score=148.09 Aligned_cols=147 Identities=17% Similarity=0.167 Sum_probs=115.4
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
....++|+||||+|+||.+++++|+++|++|++++|+ .+|++
T Consensus 9 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~--------------------------------------~~Dl~ 50 (292)
T 1vl0_A 9 HHHHMKILITGANGQLGREIQKQLKGKNVEVIPTDVQ--------------------------------------DLDIT 50 (292)
T ss_dssp ---CEEEEEESTTSHHHHHHHHHHTTSSEEEEEECTT--------------------------------------TCCTT
T ss_pred ccccceEEEECCCChHHHHHHHHHHhCCCeEEeccCc--------------------------------------cCCCC
Confidence 3467899999999999999999999999999999885 15999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
|.+++.++++.. ++|+||||||... .+.+.++++..+++|+.++.++++++.+. +. +||++||.
T Consensus 51 d~~~~~~~~~~~-----~~d~vih~A~~~~-----~~~~~~~~~~~~~~nv~~~~~l~~a~~~~-----~~-~iv~~SS~ 114 (292)
T 1vl0_A 51 NVLAVNKFFNEK-----KPNVVINCAAHTA-----VDKCEEQYDLAYKINAIGPKNLAAAAYSV-----GA-EIVQISTD 114 (292)
T ss_dssp CHHHHHHHHHHH-----CCSEEEECCCCCC-----HHHHHHCHHHHHHHHTHHHHHHHHHHHHH-----TC-EEEEEEEG
T ss_pred CHHHHHHHHHhc-----CCCEEEECCccCC-----HHHHhcCHHHHHHHHHHHHHHHHHHHHHc-----CC-eEEEechH
Confidence 999998887754 7999999999743 12334678899999999999999998763 23 89999986
Q ss_pred CCCCCCC-----------CCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCC
Q 010380 334 GSGGSST-----------PLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTD 382 (512)
Q Consensus 334 ~a~~~~~-----------p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~ 382 (512)
. ...+. .....|+.+|.+.+.+++.++. .+..+.|+.|-.+
T Consensus 115 ~-v~~~~~~~~~~E~~~~~~~~~Y~~sK~~~E~~~~~~~~-------~~~~lR~~~v~G~ 166 (292)
T 1vl0_A 115 Y-VFDGEAKEPITEFDEVNPQSAYGKTKLEGENFVKALNP-------KYYIVRTAWLYGD 166 (292)
T ss_dssp G-GSCSCCSSCBCTTSCCCCCSHHHHHHHHHHHHHHHHCS-------SEEEEEECSEESS
T ss_pred H-eECCCCCCCCCCCCCCCCccHHHHHHHHHHHHHHhhCC-------CeEEEeeeeeeCC
Confidence 2 22211 1356899999999999988653 3677888888755
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.59 E-value=6.1e-15 Score=148.12 Aligned_cols=155 Identities=13% Similarity=0.073 Sum_probs=121.5
Q ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhh
Q 010380 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPAD 257 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~s 257 (512)
++|+||||+|+||.+++++|+++|++|++++|++...+ + .++.++.+|++ .++
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-----~---------------------~~~~~~~~Dl~-~~~ 55 (311)
T 3m2p_A 3 LKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKA-----I---------------------NDYEYRVSDYT-LED 55 (311)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC-------------------------------CCEEEECCCC-HHH
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCccc-----C---------------------CceEEEEcccc-HHH
Confidence 68999999999999999999999999999999843221 1 14678999999 888
Q ss_pred HHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCCC
Q 010380 258 VQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGG 337 (512)
Q Consensus 258 v~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~~ 337 (512)
+.++++ ++|+|||+||.... . +.+..+++|+.++.++++++.. . +..++|++||.. ..
T Consensus 56 ~~~~~~-------~~d~Vih~a~~~~~-~--------~~~~~~~~n~~~~~~ll~a~~~----~-~~~r~v~~SS~~-vy 113 (311)
T 3m2p_A 56 LINQLN-------DVDAVVHLAATRGS-Q--------GKISEFHDNEILTQNLYDACYE----N-NISNIVYASTIS-AY 113 (311)
T ss_dssp HHHHTT-------TCSEEEECCCCCCS-S--------SCGGGTHHHHHHHHHHHHHHHH----T-TCCEEEEEEEGG-GC
T ss_pred HHHhhc-------CCCEEEEccccCCC-C--------ChHHHHHHHHHHHHHHHHHHHH----c-CCCEEEEEccHH-Hh
Confidence 777654 79999999998652 1 3455788999999988888743 2 346899999863 22
Q ss_pred C-----------CCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcc
Q 010380 338 S-----------STPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLL 384 (512)
Q Consensus 338 ~-----------~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~ 384 (512)
. +......|+.+|.+.+.+++.++.+. |++++.+.||.|-.+..
T Consensus 114 g~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---g~~~~ilRp~~v~G~~~ 168 (311)
T 3m2p_A 114 SDETSLPWNEKELPLPDLMYGVSKLACEHIGNIYSRKK---GLCIKNLRFAHLYGFNE 168 (311)
T ss_dssp CCGGGCSBCTTSCCCCSSHHHHHHHHHHHHHHHHHHHS---CCEEEEEEECEEECSCC
T ss_pred CCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHc---CCCEEEEeeCceeCcCC
Confidence 1 11234689999999999999998864 79999999999987754
|
| >1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.58 E-value=3e-15 Score=149.50 Aligned_cols=163 Identities=13% Similarity=0.109 Sum_probs=122.4
Q ss_pred EEEEECCCChHHHHHHHHHHHCC-CEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhh
Q 010380 179 NVVITGSTRGLGKALAREFLLSG-DRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPAD 257 (512)
Q Consensus 179 ~vLVTGassGIG~aiA~~La~~G-a~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~s 257 (512)
+|+||||+|+||.+++++|+++| ++|++++|+..... ...+. +.. +.+|++|.+.
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~--~~~~~-------------------~~~---~~~d~~~~~~ 56 (310)
T 1eq2_A 1 MIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK--FVNLV-------------------DLN---IADYMDKEDF 56 (310)
T ss_dssp CEEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGG--GHHHH-------------------TSC---CSEEEEHHHH
T ss_pred CEEEEcCccHHHHHHHHHHHHCCCcEEEEEccCCCCch--hhhcC-------------------cce---eccccccHHH
Confidence 37999999999999999999999 89999999865421 01111 111 6789998888
Q ss_pred HHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCCC
Q 010380 258 VQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGG 337 (512)
Q Consensus 258 v~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~~ 337 (512)
++++++.. .++++|+|||+||... . +.++++..+++|+.++.++++++.+. +. ++|++||.. ..
T Consensus 57 ~~~~~~~~--~~~~~d~vi~~a~~~~-~------~~~~~~~~~~~n~~~~~~l~~a~~~~-----~~-~~v~~SS~~-v~ 120 (310)
T 1eq2_A 57 LIQIMAGE--EFGDVEAIFHEGACSS-T------TEWDGKYMMDNNYQYSKELLHYCLER-----EI-PFLYASSAA-TY 120 (310)
T ss_dssp HHHHHTTC--CCSSCCEEEECCSCCC-T------TCCCHHHHHHHTHHHHHHHHHHHHHH-----TC-CEEEEEEGG-GG
T ss_pred HHHHHhcc--ccCCCcEEEECccccc-C------cccCHHHHHHHHHHHHHHHHHHHHHc-----CC-eEEEEeeHH-Hh
Confidence 77765421 0236999999999754 1 23456889999999999999988653 34 899999863 22
Q ss_pred CCC-----------CCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcc
Q 010380 338 SST-----------PLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLL 384 (512)
Q Consensus 338 ~~~-----------p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~ 384 (512)
... .....|+.+|.+.+.+++.++.+. |++++++.||.|..|..
T Consensus 121 g~~~~~~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~~~---g~~~~~lrp~~v~G~~~ 175 (310)
T 1eq2_A 121 GGRTSDFIESREYEKPLNVYGYSKFLFDEYVRQILPEA---NSQIVGFRYFNVYGPRE 175 (310)
T ss_dssp TTCCSCBCSSGGGCCCSSHHHHHHHHHHHHHHHHGGGC---SSCEEEEEECEEESSSC
T ss_pred CCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHc---CCCEEEEeCCcEECcCC
Confidence 111 225689999999999999988763 89999999999988753
|
| >1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=4.5e-15 Score=165.13 Aligned_cols=166 Identities=11% Similarity=0.037 Sum_probs=127.2
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHHC-CCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 175 AGPRNVVITGSTRGLGKALAREFLLS-GDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 175 l~gk~vLVTGassGIG~aiA~~La~~-Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
+++++|+||||+|+||.+++++|+++ |++|++++|+.++.+.. . ...++.++.+|++
T Consensus 313 ~~~~~VLVTGatG~IG~~l~~~Ll~~~g~~V~~~~r~~~~~~~~----~------------------~~~~v~~v~~Dl~ 370 (660)
T 1z7e_A 313 RRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRF----L------------------NHPHFHFVEGDIS 370 (660)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHHHSSSEEEEEEESCCTTTGGG----T------------------TCTTEEEEECCTT
T ss_pred ccCceEEEEcCCcHHHHHHHHHHHhcCCCEEEEEEcCchhhhhh----c------------------cCCceEEEECCCC
Confidence 56789999999999999999999998 89999999987653211 0 1246888999999
Q ss_pred Chhh-HHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 254 EPAD-VQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 254 d~~s-v~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
|.++ ++++++ ++|+||||||.... . ...++++..+++|+.++.++++++.. . + +++|++||
T Consensus 371 d~~~~~~~~~~-------~~D~Vih~Aa~~~~-~----~~~~~~~~~~~~Nv~gt~~ll~aa~~----~-~-~r~V~~SS 432 (660)
T 1z7e_A 371 IHSEWIEYHVK-------KCDVVLPLVAIATP-I----EYTRNPLRVFELDFEENLRIIRYCVK----Y-R-KRIIFPST 432 (660)
T ss_dssp TCHHHHHHHHH-------HCSEEEECCCCCCT-H----HHHHSHHHHHHHHTHHHHHHHHHHHH----T-T-CEEEEECC
T ss_pred CcHHHHHHhhc-------CCCEEEECceecCc-c----ccccCHHHHHHhhhHHHHHHHHHHHH----h-C-CEEEEEec
Confidence 9765 555543 58999999997541 1 12345678999999999998888754 2 3 69999998
Q ss_pred CCCCCCCC------------------CCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcc
Q 010380 333 AGSGGSST------------------PLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLL 384 (512)
Q Consensus 333 ~~a~~~~~------------------p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~ 384 (512)
.. ..... .....|+.||.+.+.+++.++.+. |++++++.||.|.++..
T Consensus 433 ~~-vyg~~~~~~~~E~~~~~~~~p~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRpg~v~Gp~~ 498 (660)
T 1z7e_A 433 SE-VYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKE---GLQFTLFRPFNWMGPRL 498 (660)
T ss_dssp GG-GGBTCCSSSBCTTTCCEEECCTTCTTHHHHHHHHHHHHHHHHHHHHH---CCCEEEEEECSEESTTS
T ss_pred HH-HcCCCCCcccCCCccccccCcccCCCCCcHHHHHHHHHHHHHHHHHc---CCCEEEECCCcccCCCc
Confidence 63 22110 123379999999999999998876 79999999999988754
|
| >4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=7.9e-15 Score=146.03 Aligned_cols=161 Identities=13% Similarity=0.018 Sum_probs=120.1
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
+.+.+++||||||+|+||.+++++|+++|+ +... ....+..+.+|+
T Consensus 2 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~------~~~~----------------------------~~~~~~~~~~D~ 47 (319)
T 4b8w_A 2 LYFQSMRILVTGGSGLVGKAIQKVVADGAG------LPGE----------------------------DWVFVSSKDADL 47 (319)
T ss_dssp CCCCCCEEEEETCSSHHHHHHHHHHHTTTC------CTTC----------------------------EEEECCTTTCCT
T ss_pred ccccCCeEEEECCCcHHHHHHHHHHHhcCC------cccc----------------------------cccccCceeccc
Confidence 356789999999999999999999999998 1100 112344457899
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|++++.++++.. ++|+|||+||.... ...+.++.+..+++|+.++.++++++.. . +..++|++||
T Consensus 48 ~d~~~~~~~~~~~-----~~d~Vih~A~~~~~----~~~~~~~~~~~~~~nv~gt~~ll~a~~~----~-~~~~~v~~SS 113 (319)
T 4b8w_A 48 TDTAQTRALFEKV-----QPTHVIHLAAMVGG----LFRNIKYNLDFWRKNVHMNDNVLHSAFE----V-GARKVVSCLS 113 (319)
T ss_dssp TSHHHHHHHHHHS-----CCSEEEECCCCCCC----HHHHTTCHHHHHHHHHHHHHHHHHHHHH----T-TCSEEEEECC
T ss_pred CCHHHHHHHHhhc-----CCCEEEECceeccc----ccccccCHHHHHHHHHHHHHHHHHHHHH----c-CCCeEEEEcc
Confidence 9999998887653 69999999997431 1122345577899999999999888744 2 3458999998
Q ss_pred CCCCC---------------CCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcc
Q 010380 333 AGSGG---------------SSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLL 384 (512)
Q Consensus 333 ~~a~~---------------~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~ 384 (512)
..... .+.|....|+.||.+.+.+++.++.+. |++++++.|+.|-.|..
T Consensus 114 ~~vyg~~~~~~~~E~~~~~~~~~p~~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~Gp~~ 177 (319)
T 4b8w_A 114 TCIFPDKTTYPIDETMIHNGPPHNSNFGYSYAKRMIDVQNRAYFQQY---GCTFTAVIPTNVFGPHD 177 (319)
T ss_dssp GGGSCSSCCSSBCGGGGGBSCCCSSSHHHHHHHHHHHHHHHHHHHHH---CCEEEEEEECEEECTTC
T ss_pred hhhcCCCCCCCccccccccCCCCCCcchHHHHHHHHHHHHHHHHHhh---CCCEEEEeeccccCCCC
Confidence 73211 111222369999999999999998886 79999999999987653
|
| >3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.51 E-value=2.1e-14 Score=142.26 Aligned_cols=143 Identities=18% Similarity=0.183 Sum_probs=114.1
Q ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhhH
Q 010380 179 NVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPADV 258 (512)
Q Consensus 179 ~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~sv 258 (512)
+|+||||+|+||.+++++|+++|++|++++|. .+|++|.+++
T Consensus 7 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~--------------------------------------~~D~~d~~~~ 48 (287)
T 3sc6_A 7 RVIITGANGQLGKQLQEELNPEEYDIYPFDKK--------------------------------------LLDITNISQV 48 (287)
T ss_dssp EEEEESTTSHHHHHHHHHSCTTTEEEEEECTT--------------------------------------TSCTTCHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCEEEEeccc--------------------------------------ccCCCCHHHH
Confidence 79999999999999999999999999999982 2599999999
Q ss_pred HHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCC
Q 010380 259 QKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGS 338 (512)
Q Consensus 259 ~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~~~ 338 (512)
.++++.. ++|+|||+||.... +.+.++++..+++|+.++.++++++.+. +.++|++||.. ...
T Consensus 49 ~~~~~~~-----~~d~vi~~a~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~------~~~~v~~SS~~-vy~ 111 (287)
T 3sc6_A 49 QQVVQEI-----RPHIIIHCAAYTKV-----DQAEKERDLAYVINAIGARNVAVASQLV------GAKLVYISTDY-VFQ 111 (287)
T ss_dssp HHHHHHH-----CCSEEEECCCCCCH-----HHHTTCHHHHHHHHTHHHHHHHHHHHHH------TCEEEEEEEGG-GSC
T ss_pred HHHHHhc-----CCCEEEECCcccCh-----HHHhcCHHHHHHHHHHHHHHHHHHHHHc------CCeEEEEchhh-hcC
Confidence 9888765 79999999997541 1122467889999999999999988653 24799999862 221
Q ss_pred C-----------CCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCc
Q 010380 339 S-----------TPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDL 383 (512)
Q Consensus 339 ~-----------~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~ 383 (512)
+ ..+...|+.+|.+.+.+++.++. +++.+.|+.|-.|.
T Consensus 112 ~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~-------~~~ilR~~~v~G~~ 160 (287)
T 3sc6_A 112 GDRPEGYDEFHNPAPINIYGASKYAGEQFVKELHN-------KYFIVRTSWLYGKY 160 (287)
T ss_dssp CCCSSCBCTTSCCCCCSHHHHHHHHHHHHHHHHCS-------SEEEEEECSEECSS
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCC-------CcEEEeeeeecCCC
Confidence 1 22356899999999999887654 35789999987764
|
| >1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=2.3e-14 Score=142.62 Aligned_cols=147 Identities=17% Similarity=0.114 Sum_probs=114.6
Q ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhhH
Q 010380 179 NVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPADV 258 (512)
Q Consensus 179 ~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~sv 258 (512)
+|+||||+|+||.+++++|+ +|++|++++|+.. ++.+|++|.+++
T Consensus 2 ~ilVtGatG~iG~~l~~~L~-~g~~V~~~~r~~~----------------------------------~~~~D~~d~~~~ 46 (299)
T 1n2s_A 2 NILLFGKTGQVGWELQRSLA-PVGNLIALDVHSK----------------------------------EFCGDFSNPKGV 46 (299)
T ss_dssp EEEEECTTSHHHHHHHHHTT-TTSEEEEECTTCS----------------------------------SSCCCTTCHHHH
T ss_pred eEEEECCCCHHHHHHHHHhh-cCCeEEEeccccc----------------------------------cccccCCCHHHH
Confidence 58999999999999999999 8999999999751 146899999998
Q ss_pred HHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCC
Q 010380 259 QKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGS 338 (512)
Q Consensus 259 ~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~~~ 338 (512)
.++++.. ++|+|||+||.... ..+.++++..+++|+.++.++++++.. . +.++|++||.. ...
T Consensus 47 ~~~~~~~-----~~d~vih~a~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~a~~~----~--~~~~v~~SS~~-vy~ 109 (299)
T 1n2s_A 47 AETVRKL-----RPDVIVNAAAHTAV-----DKAESEPELAQLLNATSVEAIAKAANE----T--GAWVVHYSTDY-VFP 109 (299)
T ss_dssp HHHHHHH-----CCSEEEECCCCCCH-----HHHTTCHHHHHHHHTHHHHHHHHHHTT----T--TCEEEEEEEGG-GSC
T ss_pred HHHHHhc-----CCCEEEECcccCCH-----hhhhcCHHHHHHHHHHHHHHHHHHHHH----c--CCcEEEEeccc-EEe
Confidence 8887754 69999999997431 112345678899999999999888732 2 24899999862 221
Q ss_pred C-----------CCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcc
Q 010380 339 S-----------TPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLL 384 (512)
Q Consensus 339 ~-----------~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~ 384 (512)
+ ......|+.+|.+.+.+++.++. +++++.||.+..+..
T Consensus 110 ~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~-------~~~ilRp~~v~G~~~ 159 (299)
T 1n2s_A 110 GTGDIPWQETDATSPLNVYGKTKLAGEKALQDNCP-------KHLIFRTSWVYAGKG 159 (299)
T ss_dssp CCTTCCBCTTSCCCCSSHHHHHHHHHHHHHHHHCS-------SEEEEEECSEECSSS
T ss_pred CCCCCCCCCCCCCCCccHHHHHHHHHHHHHHHhCC-------CeEEEeeeeecCCCc
Confidence 1 12256899999999999887642 788999999988753
|
| >4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.51 E-value=3.7e-14 Score=152.72 Aligned_cols=175 Identities=16% Similarity=0.135 Sum_probs=126.0
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhH---HHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESV---RMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l---~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
..++|+||||+|+||.+++++|.++|++|++++|+..+. +.+.+.+........ ......++.++.+|+
T Consensus 149 ~~~~VLVTGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~l~~~l~~~~~~~~--------~~~~~~~v~~v~~Dl 220 (508)
T 4f6l_B 149 PLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEET--------VEMMLSNIEVIVGDF 220 (508)
T ss_dssp CCEEEEESCTTSHHHHHHHHHTBTTEEEEEEEEESSSHHHHHHHHHHHHHHHSCHHH--------HHHHSTTEEEEEEBT
T ss_pred CCCeEEEECCccchHHHHHHHHHhcCCEEEEEECCCChHHHHHHHHHHHHHhccccc--------chhccCceEEEecCC
Confidence 457999999999999999999999999999999987732 233333322100000 000245799999999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|++++. ...++|+||||||... ..+.++..+++|+.++.++++++.. +..++|++||
T Consensus 221 ~d~~~l~--------~~~~~D~Vih~Aa~~~--------~~~~~~~~~~~Nv~gt~~ll~~a~~------~~~~~v~iSS 278 (508)
T 4f6l_B 221 ECMDDVV--------LPENMDTIIHAGARTD--------HFGDDDEFEKVNVQGTVDVIRLAQQ------HHARLIYVST 278 (508)
T ss_dssp TBCSSCC--------CSSCCSEEEECCCC----------------CCHHHHHHHHHHHHHHHHT------TTCEEEEEEE
T ss_pred cccccCC--------CccCCCEEEECCceec--------CCCCHHHHhhhHHHHHHHHHHHHHh------CCCcEEEeCC
Confidence 9988777 3468999999999753 1235677889999999999998755 2468999998
Q ss_pred CCCCCC-----------------CCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcc
Q 010380 333 AGSGGS-----------------STPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLL 384 (512)
Q Consensus 333 ~~a~~~-----------------~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~ 384 (512)
...+.. +......|+.||.+.+.+.+.++. .|++++++.||.|-.+..
T Consensus 279 ~~vG~~~~~~~~~~~~~E~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~----~gi~~~ilRp~~v~G~~~ 343 (508)
T 4f6l_B 279 ISVGTYFDIDTEDVTFSEADVYKGQLLTSPYTRSKFYSELKVLEAVN----NGLDGRIVRVGNLTSPYN 343 (508)
T ss_dssp SCTTSEECTTCSCCEECTTCSCSSBCCCSHHHHHHHHHHHHHHHHHH----TTCEEEEEEECCEESCSS
T ss_pred hhhccCCccCCcCcccccccccccccCCCcHHHHHHHHHHHHHHHHH----cCCCEEEEecceeccCCC
Confidence 744110 012457899999999999988654 489999999999987653
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=99.51 E-value=4.4e-14 Score=139.71 Aligned_cols=145 Identities=13% Similarity=0.098 Sum_probs=112.4
Q ss_pred CEEEEECCCChHHHHHHHHHHHC--CCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCCh
Q 010380 178 RNVVITGSTRGLGKALAREFLLS--GDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEP 255 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~--Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~ 255 (512)
|+++||||+|+||.+++++|+++ |++|++++|+.++.+.+ .. ..+.++.+|++|+
T Consensus 1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~l----~~-------------------~~~~~~~~D~~d~ 57 (287)
T 2jl1_A 1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTL----AD-------------------QGVEVRHGDYNQP 57 (287)
T ss_dssp CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTHHH----HH-------------------TTCEEEECCTTCH
T ss_pred CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHhHH----hh-------------------cCCeEEEeccCCH
Confidence 46899999999999999999999 99999999987664322 11 2467789999999
Q ss_pred hhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCC
Q 010380 256 ADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGS 335 (512)
Q Consensus 256 ~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a 335 (512)
+++.++++ .+|+|||+||... . + ++|+.++.++++++.. . +.++||++||...
T Consensus 58 ~~l~~~~~-------~~d~vi~~a~~~~--------~-~------~~n~~~~~~l~~a~~~----~-~~~~~v~~Ss~~~ 110 (287)
T 2jl1_A 58 ESLQKAFA-------GVSKLLFISGPHY--------D-N------TLLIVQHANVVKAARD----A-GVKHIAYTGYAFA 110 (287)
T ss_dssp HHHHHHTT-------TCSEEEECCCCCS--------C-H------HHHHHHHHHHHHHHHH----T-TCSEEEEEEETTG
T ss_pred HHHHHHHh-------cCCEEEEcCCCCc--------C-c------hHHHHHHHHHHHHHHH----c-CCCEEEEECCCCC
Confidence 88877654 5899999999521 1 1 5788888888777643 3 3569999998733
Q ss_pred CCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCc
Q 010380 336 GGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDL 383 (512)
Q Consensus 336 ~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~ 383 (512)
. . ....|+.+|.+.+.+.+. .|++++++.||++.++.
T Consensus 111 -~-~--~~~~y~~~K~~~E~~~~~-------~~~~~~ilrp~~~~~~~ 147 (287)
T 2jl1_A 111 -E-E--SIIPLAHVHLATEYAIRT-------TNIPYTFLRNALYTDFF 147 (287)
T ss_dssp -G-G--CCSTHHHHHHHHHHHHHH-------TTCCEEEEEECCBHHHH
T ss_pred -C-C--CCCchHHHHHHHHHHHHH-------cCCCeEEEECCEecccc
Confidence 2 1 224799999999988753 48999999999987765
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=99.50 E-value=8.6e-14 Score=138.89 Aligned_cols=155 Identities=15% Similarity=0.052 Sum_probs=111.3
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCC-CEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCCh
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSG-DRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEP 255 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~G-a~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~ 255 (512)
.|+|+||||+|+||.+++++|+++| ++|++++|++++... +.+.. ..+.++.+|++|+
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~--~~l~~-------------------~~~~~~~~D~~d~ 63 (299)
T 2wm3_A 5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAA--KELRL-------------------QGAEVVQGDQDDQ 63 (299)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHH--HHHHH-------------------TTCEEEECCTTCH
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHH--HHHHH-------------------CCCEEEEecCCCH
Confidence 5789999999999999999999999 999999999776421 22222 2467789999999
Q ss_pred hhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCC
Q 010380 256 ADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGS 335 (512)
Q Consensus 256 ~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a 335 (512)
+++.++++ .+|+||||||.... . ..+.|+.+ ++.+++.+++. +.++||++|+.+.
T Consensus 64 ~~l~~~~~-------~~d~vi~~a~~~~~-~------------~~~~~~~~----~~~~~~aa~~~-gv~~iv~~S~~~~ 118 (299)
T 2wm3_A 64 VIMELALN-------GAYATFIVTNYWES-C------------SQEQEVKQ----GKLLADLARRL-GLHYVVYSGLENI 118 (299)
T ss_dssp HHHHHHHT-------TCSEEEECCCHHHH-T------------CHHHHHHH----HHHHHHHHHHH-TCSEEEECCCCCH
T ss_pred HHHHHHHh-------cCCEEEEeCCCCcc-c------------cchHHHHH----HHHHHHHHHHc-CCCEEEEEcCccc
Confidence 98887764 58999999985321 0 12334444 44445555554 4578999765421
Q ss_pred CC-CCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcc
Q 010380 336 GG-SSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLL 384 (512)
Q Consensus 336 ~~-~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~ 384 (512)
.. ...+....|+.+|.+++.+.+. .|++++++.||++.+++.
T Consensus 119 ~~~~~~~~~~~y~~sK~~~e~~~~~-------~gi~~~ilrp~~~~~~~~ 161 (299)
T 2wm3_A 119 KKLTAGRLAAAHFDGKGEVEEYFRD-------IGVPMTSVRLPCYFENLL 161 (299)
T ss_dssp HHHTTTSCCCHHHHHHHHHHHHHHH-------HTCCEEEEECCEEGGGGG
T ss_pred cccCCCcccCchhhHHHHHHHHHHH-------CCCCEEEEeecHHhhhch
Confidence 11 1112246799999999988764 379999999999988764
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.2e-14 Score=144.13 Aligned_cols=149 Identities=16% Similarity=0.137 Sum_probs=112.8
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCCh
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEP 255 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~ 255 (512)
++++|+||| +|+||.+++++|+++|++|++++|+.+++ ..++.++.+|++|.
T Consensus 2 ~~~~ilVtG-aG~iG~~l~~~L~~~g~~V~~~~r~~~~~---------------------------~~~~~~~~~Dl~d~ 53 (286)
T 3gpi_A 2 SLSKILIAG-CGDLGLELARRLTAQGHEVTGLRRSAQPM---------------------------PAGVQTLIADVTRP 53 (286)
T ss_dssp CCCCEEEEC-CSHHHHHHHHHHHHTTCCEEEEECTTSCC---------------------------CTTCCEEECCTTCG
T ss_pred CCCcEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCcccc---------------------------ccCCceEEccCCCh
Confidence 457899999 59999999999999999999999986541 13567799999999
Q ss_pred hhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCC
Q 010380 256 ADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGS 335 (512)
Q Consensus 256 ~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a 335 (512)
+++.++++ +++|+|||+||... ++.+..+++|+.++.++++++. +. +.+++|++||..
T Consensus 54 ~~~~~~~~------~~~d~vih~a~~~~----------~~~~~~~~~n~~~~~~ll~a~~----~~-~~~~~v~~SS~~- 111 (286)
T 3gpi_A 54 DTLASIVH------LRPEILVYCVAASE----------YSDEHYRLSYVEGLRNTLSALE----GA-PLQHVFFVSSTG- 111 (286)
T ss_dssp GGCTTGGG------GCCSEEEECHHHHH----------HC-----CCSHHHHHHHHHHTT----TS-CCCEEEEEEEGG-
T ss_pred HHHHHhhc------CCCCEEEEeCCCCC----------CCHHHHHHHHHHHHHHHHHHHh----hC-CCCEEEEEcccE-
Confidence 98887654 36999999999632 3456788999999988887764 22 457999999863
Q ss_pred CCC-----------CCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCc
Q 010380 336 GGS-----------STPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDL 383 (512)
Q Consensus 336 ~~~-----------~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~ 383 (512)
... +......|+.+|.+.+.+ +.. ++++++.||.|-.+.
T Consensus 112 vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~-~~~--------~~~~ilR~~~v~G~~ 161 (286)
T 3gpi_A 112 VYGQEVEEWLDEDTPPIAKDFSGKRMLEAEAL-LAA--------YSSTILRFSGIYGPG 161 (286)
T ss_dssp GCCCCCSSEECTTSCCCCCSHHHHHHHHHHHH-GGG--------SSEEEEEECEEEBTT
T ss_pred EEcCCCCCCCCCCCCCCCCChhhHHHHHHHHH-Hhc--------CCeEEEecccccCCC
Confidence 221 122356899999999887 432 788999999998764
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=2.1e-13 Score=140.32 Aligned_cols=153 Identities=12% Similarity=0.074 Sum_probs=111.6
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEcc-CC
Q 010380 175 AGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACD-VC 253 (512)
Q Consensus 175 l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~D-lt 253 (512)
+.+++|+||||+|+||.+++++|+++|++|++++|+.++.. .+++.+ ..++.++.+| ++
T Consensus 3 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~--~~~l~~------------------~~~v~~v~~D~l~ 62 (352)
T 1xgk_A 3 QQKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLI--AEELQA------------------IPNVTLFQGPLLN 62 (352)
T ss_dssp CCCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHH--HHHHHT------------------STTEEEEESCCTT
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChhh--HHHHhh------------------cCCcEEEECCccC
Confidence 34678999999999999999999999999999999977642 122211 1357788999 99
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCC-CCeEEeecC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPK-GGHIFNMDG 332 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~-~g~IV~vSS 332 (512)
|++++.++++ .+|++|||++... . +.|..+ +.+++.+++. + .++||++||
T Consensus 63 d~~~l~~~~~-------~~d~Vi~~a~~~~-------~---------~~~~~~-----~~l~~aa~~~-g~v~~~V~~SS 113 (352)
T 1xgk_A 63 NVPLMDTLFE-------GAHLAFINTTSQA-------G---------DEIAIG-----KDLADAAKRA-GTIQHYIYSSM 113 (352)
T ss_dssp CHHHHHHHHT-------TCSEEEECCCSTT-------S---------CHHHHH-----HHHHHHHHHH-SCCSEEEEEEC
T ss_pred CHHHHHHHHh-------cCCEEEEcCCCCC-------c---------HHHHHH-----HHHHHHHHHc-CCccEEEEeCC
Confidence 9998887654 5899999987531 0 124433 4444545544 3 469999998
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCc
Q 010380 333 AGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDL 383 (512)
Q Consensus 333 ~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~ 383 (512)
......+.+....|+.||++.+.+++.+ |+++++|.||++-++.
T Consensus 114 ~~~~~~~~~~~~~y~~sK~~~E~~~~~~-------gi~~~ivrpg~~g~~~ 157 (352)
T 1xgk_A 114 PDHSLYGPWPAVPMWAPKFTVENYVRQL-------GLPSTFVYAGIYNNNF 157 (352)
T ss_dssp CCGGGTSSCCCCTTTHHHHHHHHHHHTS-------SSCEEEEEECEEGGGC
T ss_pred ccccccCCCCCccHHHHHHHHHHHHHHc-------CCCEEEEecceecCCc
Confidence 7422223344578999999999988752 7999999999886554
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-13 Score=136.64 Aligned_cols=142 Identities=11% Similarity=0.077 Sum_probs=104.5
Q ss_pred EEEEECCCChHHHHHHHHHHHC--CCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChh
Q 010380 179 NVVITGSTRGLGKALAREFLLS--GDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPA 256 (512)
Q Consensus 179 ~vLVTGassGIG~aiA~~La~~--Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~ 256 (512)
+++||||+|+||.+++++|+++ |++|++++|++++.+. +.. ..+.++.+|++|++
T Consensus 1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~----~~~-------------------~~~~~~~~D~~d~~ 57 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQA----LAA-------------------QGITVRQADYGDEA 57 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCHH----HHH-------------------TTCEEEECCTTCHH
T ss_pred CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhhh----hhc-------------------CCCeEEEcCCCCHH
Confidence 3799999999999999999998 9999999999776432 211 24677899999998
Q ss_pred hHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCC
Q 010380 257 DVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSG 336 (512)
Q Consensus 257 sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~ 336 (512)
++.++++ .+|+|||+||... +.|+.++.++.+++. +. +.++||++||...
T Consensus 58 ~~~~~~~-------~~d~vi~~a~~~~-----------------~~~~~~~~~l~~a~~----~~-~~~~~v~~Ss~~~- 107 (286)
T 2zcu_A 58 ALTSALQ-------GVEKLLLISSSEV-----------------GQRAPQHRNVINAAK----AA-GVKFIAYTSLLHA- 107 (286)
T ss_dssp HHHHHTT-------TCSEEEECC-------------------------CHHHHHHHHHH----HH-TCCEEEEEEETTT-
T ss_pred HHHHHHh-------CCCEEEEeCCCCc-----------------hHHHHHHHHHHHHHH----Hc-CCCEEEEECCCCC-
Confidence 8877654 5899999998521 026666666655553 33 3568999998733
Q ss_pred CCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCc
Q 010380 337 GSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDL 383 (512)
Q Consensus 337 ~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~ 383 (512)
. +....|+.+|.+.+.+.+. .|++++++.||++.+++
T Consensus 108 ~---~~~~~y~~sK~~~e~~~~~-------~~~~~~ilrp~~~~~~~ 144 (286)
T 2zcu_A 108 D---TSPLGLADEHIETEKMLAD-------SGIVYTLLRNGWYSENY 144 (286)
T ss_dssp T---TCCSTTHHHHHHHHHHHHH-------HCSEEEEEEECCBHHHH
T ss_pred C---CCcchhHHHHHHHHHHHHH-------cCCCeEEEeChHHhhhh
Confidence 2 2235799999999988763 37999999999987764
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=4.6e-13 Score=136.63 Aligned_cols=191 Identities=12% Similarity=0.074 Sum_probs=125.5
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCC
Q 010380 175 AGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCE 254 (512)
Q Consensus 175 l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd 254 (512)
+..++|+||||+|+||.+++++|+++|++|++++|+.....+..+.+.+. ...++.++.+|++|
T Consensus 8 M~~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l----------------~~~~v~~~~~Dl~d 71 (346)
T 3i6i_A 8 SPKGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKAL----------------EDKGAIIVYGLINE 71 (346)
T ss_dssp ---CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHH----------------HHTTCEEEECCTTC
T ss_pred CCCCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHH----------------HhCCcEEEEeecCC
Confidence 44678999999999999999999999999999999862211111112111 11467889999999
Q ss_pred hhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCC
Q 010380 255 PADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAG 334 (512)
Q Consensus 255 ~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~ 334 (512)
.+++.+++++. ++|+|||+||.. |+.+..++++++... +.-.++|. |+.+
T Consensus 72 ~~~l~~~~~~~-----~~d~Vi~~a~~~--------------------n~~~~~~l~~aa~~~----g~v~~~v~-S~~g 121 (346)
T 3i6i_A 72 QEAMEKILKEH-----EIDIVVSTVGGE--------------------SILDQIALVKAMKAV----GTIKRFLP-SEFG 121 (346)
T ss_dssp HHHHHHHHHHT-----TCCEEEECCCGG--------------------GGGGHHHHHHHHHHH----CCCSEEEC-SCCS
T ss_pred HHHHHHHHhhC-----CCCEEEECCchh--------------------hHHHHHHHHHHHHHc----CCceEEee-cccC
Confidence 99998887653 699999999861 788887777776543 11346665 4432
Q ss_pred CC---CCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcch-----hhhh--h-----hhhh
Q 010380 335 SG---GSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTI-----QNKQ--M-----FNII 399 (512)
Q Consensus 335 a~---~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~-----~~~~--~-----~~~~ 399 (512)
.. ..+.+....|+.+|.+++.+.+. .|+.++.+.||++-..+....... .... . ....
T Consensus 122 ~~~~e~~~~~p~~~y~~sK~~~e~~l~~-------~g~~~tivrpg~~~g~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~ 194 (346)
T 3i6i_A 122 HDVNRADPVEPGLNMYREKRRVRQLVEE-------SGIPFTYICCNSIASWPYYNNIHPSEVLPPTDFFQIYGDGNVKAY 194 (346)
T ss_dssp SCTTTCCCCTTHHHHHHHHHHHHHHHHH-------TTCCBEEEECCEESSCCCSCC-----CCCCSSCEEEETTSCCCEE
T ss_pred CCCCccCcCCCcchHHHHHHHHHHHHHH-------cCCCEEEEEecccccccCccccccccccCCCceEEEccCCCceEE
Confidence 21 11224557899999998887764 479999999998877543221100 0000 0 0111
Q ss_pred cCCHHHHHHHhccccccch
Q 010380 400 CELPETVARTLVPRIRVVK 418 (512)
Q Consensus 400 ~~~pe~vA~~~l~r~~~~~ 418 (512)
....+++|+.++..+..++
T Consensus 195 ~i~~~Dva~~~~~~l~~~~ 213 (346)
T 3i6i_A 195 FVAGTDIGKFTMKTVDDVR 213 (346)
T ss_dssp EECHHHHHHHHHHHTTCGG
T ss_pred ecCHHHHHHHHHHHHhCcc
Confidence 2257888888877666654
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.7e-14 Score=144.45 Aligned_cols=164 Identities=16% Similarity=0.075 Sum_probs=112.2
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCC
Q 010380 175 AGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCE 254 (512)
Q Consensus 175 l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd 254 (512)
+.+++|+||||+|+||.+++++|+++|++|++++|+........+.+. ......++.++.+|++
T Consensus 5 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~---------------~~~~~~~~~~~~~Dl~- 68 (321)
T 3vps_A 5 TLKHRILITGGAGFIGGHLARALVASGEEVTVLDDLRVPPMIPPEGTG---------------KFLEKPVLELEERDLS- 68 (321)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSSCCSSCCTTSS---------------EEECSCGGGCCHHHHT-
T ss_pred cCCCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCcccccchhhhh---------------hhccCCCeeEEeCccc-
Confidence 457899999999999999999999999999999998652000000000 0001123444555654
Q ss_pred hhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCC
Q 010380 255 PADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAG 334 (512)
Q Consensus 255 ~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~ 334 (512)
++|+|||+||.... .... ++....++ |+.++.++++++... +..+||++||..
T Consensus 69 ----------------~~d~vi~~a~~~~~-~~~~----~~~~~~~~-n~~~~~~ll~a~~~~-----~v~~~v~~SS~~ 121 (321)
T 3vps_A 69 ----------------DVRLVYHLASHKSV-PRSF----KQPLDYLD-NVDSGRHLLALCTSV-----GVPKVVVGSTCE 121 (321)
T ss_dssp ----------------TEEEEEECCCCCCH-HHHT----TSTTTTHH-HHHHHHHHHHHHHHH-----TCCEEEEEEEGG
T ss_pred ----------------cCCEEEECCccCCh-HHHH----hCHHHHHH-HHHHHHHHHHHHHHc-----CCCeEEEecCHH
Confidence 79999999997541 1111 11233456 999999988887554 246899999863
Q ss_pred CCC----------CCCCCcchhhHHHHHHHHHHHHHHHHhCCCCe-EEEEEeCCcccCCcc
Q 010380 335 SGG----------SSTPLTAVYGSTKCGLRQLQASLFKESKRSKV-GVHTASPGMVLTDLL 384 (512)
Q Consensus 335 a~~----------~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GI-rVn~V~PG~V~T~~~ 384 (512)
... .+......|+.+|.+.+.+++.++.+. |+ +++++.|+.+-.|..
T Consensus 122 v~~~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~~ilRp~~v~G~~~ 179 (321)
T 3vps_A 122 VYGQADTLPTPEDSPLSPRSPYAASKVGLEMVAGAHQRAS---VAPEVGIVRFFNVYGPGE 179 (321)
T ss_dssp GGCSCSSSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHSS---SSCEEEEEEECEEECTTC
T ss_pred HhCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHc---CCCceEEEEeccccCcCC
Confidence 211 112235789999999999999998764 78 999999999987754
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=99.45 E-value=4.9e-13 Score=133.44 Aligned_cols=148 Identities=15% Similarity=0.234 Sum_probs=103.7
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcCh-------hhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEE
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSGDRVVVASRSS-------ESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIA 249 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~-------~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~ 249 (512)
+++|+||||+|+||.+++++|+++|++|++++|+. ++.+.+ +++.. ..+.++.
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~-~~l~~-------------------~~v~~v~ 61 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELI-DNYQS-------------------LGVILLE 61 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCSCCSSCHHHHHHHH-HHHHH-------------------TTCEEEE
T ss_pred CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCCcccCChHHHHHHH-HHHHh-------------------CCCEEEE
Confidence 46799999999999999999999999999999986 443322 22222 2467899
Q ss_pred ccCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEe
Q 010380 250 CDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFN 329 (512)
Q Consensus 250 ~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~ 329 (512)
+|++|++++.++++ .+|+||||||... +.+..+++++ +++.+.-+++|.
T Consensus 62 ~D~~d~~~l~~~~~-------~~d~vi~~a~~~~--------------------~~~~~~l~~a----a~~~g~v~~~v~ 110 (307)
T 2gas_A 62 GDINDHETLVKAIK-------QVDIVICAAGRLL--------------------IEDQVKIIKA----IKEAGNVKKFFP 110 (307)
T ss_dssp CCTTCHHHHHHHHT-------TCSEEEECSSSSC--------------------GGGHHHHHHH----HHHHCCCSEEEC
T ss_pred eCCCCHHHHHHHHh-------CCCEEEECCcccc--------------------cccHHHHHHH----HHhcCCceEEee
Confidence 99999988877665 5999999999631 2333444444 444311457773
Q ss_pred ecCCCCC----CCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcc
Q 010380 330 MDGAGSG----GSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLL 384 (512)
Q Consensus 330 vSS~~a~----~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~ 384 (512)
|+.+.. ....|....| .+|.+++.+.+. .|++++.++||++.+++.
T Consensus 111 -S~~g~~~~~~~~~~p~~~~y-~sK~~~e~~~~~-------~~i~~~~lrp~~~~~~~~ 160 (307)
T 2gas_A 111 -SEFGLDVDRHDAVEPVRQVF-EEKASIRRVIEA-------EGVPYTYLCCHAFTGYFL 160 (307)
T ss_dssp -SCCSSCTTSCCCCTTHHHHH-HHHHHHHHHHHH-------HTCCBEEEECCEETTTTG
T ss_pred -cccccCcccccCCCcchhHH-HHHHHHHHHHHH-------cCCCeEEEEcceeecccc
Confidence 433211 1112335679 999999887753 279999999999988654
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.8e-12 Score=128.49 Aligned_cols=146 Identities=13% Similarity=0.084 Sum_probs=101.9
Q ss_pred EEEEECCCChHHHHHHHHHHHC-CCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhh
Q 010380 179 NVVITGSTRGLGKALAREFLLS-GDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPAD 257 (512)
Q Consensus 179 ~vLVTGassGIG~aiA~~La~~-Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~s 257 (512)
+|+||||+|+||.+++++|+++ |++|++++|++++.... ...++.++.+|++|+++
T Consensus 2 ~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~-----------------------~~~~v~~~~~D~~d~~~ 58 (289)
T 3e48_A 2 NIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDD-----------------------WRGKVSVRQLDYFNQES 58 (289)
T ss_dssp CEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGG-----------------------GBTTBEEEECCTTCHHH
T ss_pred EEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHh-----------------------hhCCCEEEEcCCCCHHH
Confidence 4899999999999999999998 99999999998754211 12467889999999998
Q ss_pred HHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCCC
Q 010380 258 VQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGG 337 (512)
Q Consensus 258 v~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~~ 337 (512)
+.++++ .+|+||||||.... . ..|+.+. +.+++.+++. +.++||++||.+ ..
T Consensus 59 l~~~~~-------~~d~vi~~a~~~~~--------~-------~~~~~~~----~~l~~aa~~~-gv~~iv~~Ss~~-~~ 110 (289)
T 3e48_A 59 MVEAFK-------GMDTVVFIPSIIHP--------S-------FKRIPEV----ENLVYAAKQS-GVAHIIFIGYYA-DQ 110 (289)
T ss_dssp HHHHTT-------TCSEEEECCCCCCS--------H-------HHHHHHH----HHHHHHHHHT-TCCEEEEEEESC-CS
T ss_pred HHHHHh-------CCCEEEEeCCCCcc--------c-------hhhHHHH----HHHHHHHHHc-CCCEEEEEcccC-CC
Confidence 877664 68999999997431 0 1244444 4555555655 457999999863 22
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcc
Q 010380 338 SSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLL 384 (512)
Q Consensus 338 ~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~ 384 (512)
.. ..|..++... .+...+...|++++.+.||++.+++.
T Consensus 111 ~~----~~~~~~~~~~-----~~e~~~~~~g~~~~ilrp~~~~~~~~ 148 (289)
T 3e48_A 111 HN----NPFHMSPYFG-----YASRLLSTSGIDYTYVRMAMYMDPLK 148 (289)
T ss_dssp TT----CCSTTHHHHH-----HHHHHHHHHCCEEEEEEECEESTTHH
T ss_pred CC----CCCccchhHH-----HHHHHHHHcCCCEEEEeccccccccH
Confidence 21 2233333211 22222334589999999999998754
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.36 E-value=4.5e-12 Score=126.79 Aligned_cols=151 Identities=13% Similarity=0.150 Sum_probs=105.6
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChh-----hHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEcc
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSE-----SVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACD 251 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~-----~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~D 251 (512)
.++|+||||+|+||.+++++|+++|++|++++|+.. +.+. .+++. ...+.++.+|
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~-~~~~~-------------------~~~~~~~~~D 63 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQM-LLYFK-------------------QLGAKLIEAS 63 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHH-HHHHH-------------------TTTCEEECCC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHH-HHHHH-------------------hCCeEEEeCC
Confidence 467999999999999999999999999999999843 2221 12221 1357789999
Q ss_pred CCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeec
Q 010380 252 VCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD 331 (512)
Q Consensus 252 ltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vS 331 (512)
++|++++.++++ .+|+|||+||.... . .|+.+..++++++ ++.++-++||+ |
T Consensus 64 ~~d~~~l~~~~~-------~~d~vi~~a~~~~~-~---------------~~~~~~~~l~~aa----~~~g~v~~~v~-S 115 (313)
T 1qyd_A 64 LDDHQRLVDALK-------QVDVVISALAGGVL-S---------------HHILEQLKLVEAI----KEAGNIKRFLP-S 115 (313)
T ss_dssp SSCHHHHHHHHT-------TCSEEEECCCCSSS-S---------------TTTTTHHHHHHHH----HHSCCCSEEEC-S
T ss_pred CCCHHHHHHHHh-------CCCEEEECCccccc-h---------------hhHHHHHHHHHHH----HhcCCCceEEe-c
Confidence 999998877664 59999999997541 1 2666666655554 44421467875 4
Q ss_pred CCCCCCC-----CCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCc
Q 010380 332 GAGSGGS-----STPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDL 383 (512)
Q Consensus 332 S~~a~~~-----~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~ 383 (512)
+.+.... ..|....| .+|.+++.+.+. .|++++.+.||++..++
T Consensus 116 ~~g~~~~~~~~~~~p~~~~y-~sK~~~e~~~~~-------~g~~~~ilrp~~~~~~~ 164 (313)
T 1qyd_A 116 EFGMDPDIMEHALQPGSITF-IDKRKVRRAIEA-------ASIPYTYVSSNMFAGYF 164 (313)
T ss_dssp CCSSCTTSCCCCCSSTTHHH-HHHHHHHHHHHH-------TTCCBCEEECCEEHHHH
T ss_pred CCcCCccccccCCCCCcchH-HHHHHHHHHHHh-------cCCCeEEEEeceecccc
Confidence 4321111 12345678 999999887752 37889999999886543
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=99.34 E-value=3.2e-12 Score=128.66 Aligned_cols=147 Identities=16% Similarity=0.140 Sum_probs=99.8
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcCh-h----hHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEcc
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSGDRVVVASRSS-E----SVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACD 251 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~-~----~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~D 251 (512)
.++|+||||+|+||.+++++|+++|++|++++|+. . ...+..+++.. ..+.++.+|
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~l~~~~~-------------------~~v~~v~~D 64 (321)
T 3c1o_A 4 MEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRS-------------------MGVTIIEGE 64 (321)
T ss_dssp CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHHHHHHHH-------------------TTCEEEECC
T ss_pred ccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCcccccChHHHHHHHHhhc-------------------CCcEEEEec
Confidence 35799999999999999999999999999999986 2 11112222211 347789999
Q ss_pred CCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeec
Q 010380 252 VCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD 331 (512)
Q Consensus 252 ltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vS 331 (512)
++|++++.++++ .+|+|||+||... +.+..++ ++.+.+.+.-++|| .|
T Consensus 65 ~~d~~~l~~a~~-------~~d~vi~~a~~~~--------------------~~~~~~l----~~aa~~~g~v~~~v-~S 112 (321)
T 3c1o_A 65 MEEHEKMVSVLK-------QVDIVISALPFPM--------------------ISSQIHI----INAIKAAGNIKRFL-PS 112 (321)
T ss_dssp TTCHHHHHHHHT-------TCSEEEECCCGGG--------------------SGGGHHH----HHHHHHHCCCCEEE-CS
T ss_pred CCCHHHHHHHHc-------CCCEEEECCCccc--------------------hhhHHHH----HHHHHHhCCccEEe-cc
Confidence 999998887765 5899999998631 3333444 44444431145777 34
Q ss_pred CCCCC----CCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCC
Q 010380 332 GAGSG----GSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTD 382 (512)
Q Consensus 332 S~~a~----~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~ 382 (512)
+.+.. ....|....| .+|.+++.+.+. .|++++.|.||++..+
T Consensus 113 ~~g~~~~~~~~~~p~~~~y-~sK~~~e~~~~~-------~~~~~~~lrp~~~~~~ 159 (321)
T 3c1o_A 113 DFGCEEDRIKPLPPFESVL-EKKRIIRRAIEA-------AALPYTYVSANCFGAY 159 (321)
T ss_dssp CCSSCGGGCCCCHHHHHHH-HHHHHHHHHHHH-------HTCCBEEEECCEEHHH
T ss_pred ccccCccccccCCCcchHH-HHHHHHHHHHHH-------cCCCeEEEEeceeccc
Confidence 33111 0111224579 999999988763 2688888999988654
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=2.4e-12 Score=129.55 Aligned_cols=146 Identities=14% Similarity=0.191 Sum_probs=100.0
Q ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhh
Q 010380 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPAD 257 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~s 257 (512)
++|+||||+|+||.+++++|+++|++|++++|+.+...+..+++.. ..+.++.+|++|+++
T Consensus 12 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~~-------------------~~v~~v~~Dl~d~~~ 72 (318)
T 2r6j_A 12 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQS-------------------LGAIIVKGELDEHEK 72 (318)
T ss_dssp CCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHHH-------------------TTCEEEECCTTCHHH
T ss_pred CeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHHHhhc-------------------CCCEEEEecCCCHHH
Confidence 5799999999999999999999999999999987522222222322 246779999999998
Q ss_pred HHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCCC
Q 010380 258 VQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGG 337 (512)
Q Consensus 258 v~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~~ 337 (512)
+.++++ .+|+|||+||... +.+.. .+++.+++.++.++||+ |+.+...
T Consensus 73 l~~a~~-------~~d~vi~~a~~~~--------------------~~~~~----~l~~aa~~~g~v~~~v~-S~~g~~~ 120 (318)
T 2r6j_A 73 LVELMK-------KVDVVISALAFPQ--------------------ILDQF----KILEAIKVAGNIKRFLP-SDFGVEE 120 (318)
T ss_dssp HHHHHT-------TCSEEEECCCGGG--------------------STTHH----HHHHHHHHHCCCCEEEC-SCCSSCT
T ss_pred HHHHHc-------CCCEEEECCchhh--------------------hHHHH----HHHHHHHhcCCCCEEEe-eccccCc
Confidence 887765 5899999998631 22333 34444444321457774 4432111
Q ss_pred C----CCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCC
Q 010380 338 S----STPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTD 382 (512)
Q Consensus 338 ~----~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~ 382 (512)
. ..|....| .+|.+++.+.+. .|+.++.+.||++-.+
T Consensus 121 ~~~~~~~p~~~~y-~sK~~~e~~~~~-------~~~~~~~lr~~~~~~~ 161 (318)
T 2r6j_A 121 DRINALPPFEALI-ERKRMIRRAIEE-------ANIPYTYVSANCFASY 161 (318)
T ss_dssp TTCCCCHHHHHHH-HHHHHHHHHHHH-------TTCCBEEEECCEEHHH
T ss_pred ccccCCCCcchhH-HHHHHHHHHHHh-------cCCCeEEEEcceehhh
Confidence 1 01223578 999998887753 3788899999987654
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=99.33 E-value=7.1e-12 Score=123.86 Aligned_cols=142 Identities=11% Similarity=0.102 Sum_probs=104.2
Q ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhh
Q 010380 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPAD 257 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~s 257 (512)
++|+|||| |.||.+++++|+++|++|++++|++++.+.. .. ..+.++.+|++|.+
T Consensus 6 ~~ilVtGa-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~----~~-------------------~~~~~~~~D~~d~~- 60 (286)
T 3ius_A 6 GTLLSFGH-GYTARVLSRALAPQGWRIIGTSRNPDQMEAI----RA-------------------SGAEPLLWPGEEPS- 60 (286)
T ss_dssp CEEEEETC-CHHHHHHHHHHGGGTCEEEEEESCGGGHHHH----HH-------------------TTEEEEESSSSCCC-
T ss_pred CcEEEECC-cHHHHHHHHHHHHCCCEEEEEEcChhhhhhH----hh-------------------CCCeEEEecccccc-
Confidence 67999998 9999999999999999999999998765432 11 35788999999943
Q ss_pred HHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-CCCCeEEeecCCCCC
Q 010380 258 VQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQ-PKGGHIFNMDGAGSG 336 (512)
Q Consensus 258 v~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~-~~~g~IV~vSS~~a~ 336 (512)
+..+|+|||+||.... . . . .++.++..+.+. .+..++|++||....
T Consensus 61 -----------~~~~d~vi~~a~~~~~-~-----~--~--------------~~~~l~~a~~~~~~~~~~~v~~Ss~~vy 107 (286)
T 3ius_A 61 -----------LDGVTHLLISTAPDSG-G-----D--P--------------VLAALGDQIAARAAQFRWVGYLSTTAVY 107 (286)
T ss_dssp -----------CTTCCEEEECCCCBTT-B-----C--H--------------HHHHHHHHHHHTGGGCSEEEEEEEGGGG
T ss_pred -----------cCCCCEEEECCCcccc-c-----c--H--------------HHHHHHHHHHhhcCCceEEEEeecceec
Confidence 4579999999997541 1 1 1 123444445442 145689999986321
Q ss_pred C----------CCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCc
Q 010380 337 G----------SSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDL 383 (512)
Q Consensus 337 ~----------~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~ 383 (512)
. .+......|+.+|.+.+.+.+.+ .|++++++.||.+-.+.
T Consensus 108 g~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~------~~~~~~ilRp~~v~G~~ 158 (286)
T 3ius_A 108 GDHDGAWVDETTPLTPTAARGRWRVMAEQQWQAV------PNLPLHVFRLAGIYGPG 158 (286)
T ss_dssp CCCTTCEECTTSCCCCCSHHHHHHHHHHHHHHHS------TTCCEEEEEECEEEBTT
T ss_pred CCCCCCCcCCCCCCCCCCHHHHHHHHHHHHHHhh------cCCCEEEEeccceECCC
Confidence 1 11123457999999999988876 58999999999997764
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.33 E-value=4.3e-12 Score=126.65 Aligned_cols=151 Identities=14% Similarity=0.203 Sum_probs=101.1
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhH--HHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCC
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESV--RMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCE 254 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l--~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd 254 (512)
.++|+||||+|+||.+++++|+++|++|++++|+.... .+..+.+.+. ....+.++.+|++|
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l----------------~~~~v~~v~~D~~d 67 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESF----------------KASGANIVHGSIDD 67 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHH----------------HTTTCEEECCCTTC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHH----------------HhCCCEEEEeccCC
Confidence 46799999999999999999999999999999985321 1111122111 11357789999999
Q ss_pred hhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCC
Q 010380 255 PADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAG 334 (512)
Q Consensus 255 ~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~ 334 (512)
++++.++++ .+|+|||+||... +.+...++ +.+++.++-++||. |+.+
T Consensus 68 ~~~l~~~~~-------~~d~vi~~a~~~~--------------------~~~~~~l~----~aa~~~g~v~~~v~-S~~g 115 (308)
T 1qyc_A 68 HASLVEAVK-------NVDVVISTVGSLQ--------------------IESQVNII----KAIKEVGTVKRFFP-SEFG 115 (308)
T ss_dssp HHHHHHHHH-------TCSEEEECCCGGG--------------------SGGGHHHH----HHHHHHCCCSEEEC-SCCS
T ss_pred HHHHHHHHc-------CCCEEEECCcchh--------------------hhhHHHHH----HHHHhcCCCceEee-cccc
Confidence 998887765 5899999998631 23333444 44444322457774 4432
Q ss_pred CCC----CCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCc
Q 010380 335 SGG----SSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDL 383 (512)
Q Consensus 335 a~~----~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~ 383 (512)
... ...|....| .+|.+++.+.+. .|++++.+.||++.+++
T Consensus 116 ~~~~~~~~~~p~~~~y-~sK~~~e~~~~~-------~~~~~~~~r~~~~~~~~ 160 (308)
T 1qyc_A 116 NDVDNVHAVEPAKSVF-EVKAKVRRAIEA-------EGIPYTYVSSNCFAGYF 160 (308)
T ss_dssp SCTTSCCCCTTHHHHH-HHHHHHHHHHHH-------HTCCBEEEECCEEHHHH
T ss_pred cCccccccCCcchhHH-HHHHHHHHHHHh-------cCCCeEEEEeceecccc
Confidence 111 112334578 999999887763 26888999999886543
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.4e-11 Score=133.10 Aligned_cols=155 Identities=19% Similarity=0.232 Sum_probs=112.2
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChh
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPA 256 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~ 256 (512)
+++||||||+|.||.+++++|+++|++|++++|+..+.+ .+.+|+.+..
T Consensus 147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~~~-------------------------------~v~~d~~~~~ 195 (516)
T 3oh8_A 147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPKPG-------------------------------KRFWDPLNPA 195 (516)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCCTT-------------------------------CEECCTTSCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCcc-------------------------------ceeecccchh
Confidence 679999999999999999999999999999999865420 1567776432
Q ss_pred hHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCC
Q 010380 257 DVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSG 336 (512)
Q Consensus 257 sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~ 336 (512)
.+.+.++|+|||+||... . ...+.+..+..+++|+.++.++++++. +..+.++||++||....
T Consensus 196 ---------~~~l~~~D~Vih~A~~~~-~---~~~~~~~~~~~~~~Nv~gt~~ll~a~a----~~~~~~r~V~~SS~~vy 258 (516)
T 3oh8_A 196 ---------SDLLDGADVLVHLAGEPI-F---GRFNDSHKEAIRESRVLPTKFLAELVA----ESTQCTTMISASAVGFY 258 (516)
T ss_dssp ---------TTTTTTCSEEEECCCC---------CCGGGHHHHHHHTHHHHHHHHHHHH----HCSSCCEEEEEEEGGGG
T ss_pred ---------HHhcCCCCEEEECCCCcc-c---cccchhHHHHHHHHHHHHHHHHHHHHH----hcCCCCEEEEeCcceEe
Confidence 223357999999999754 1 145567788899999999999988743 22245689999986321
Q ss_pred C----------CCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCc
Q 010380 337 G----------SSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDL 383 (512)
Q Consensus 337 ~----------~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~ 383 (512)
. ...+....|+.+|...+.+.+. ....|++++++.||.|..+.
T Consensus 259 g~~~~~~~~~E~~~~~~~~y~~~~~~~E~~~~~----~~~~gi~~~ilRp~~v~Gp~ 311 (516)
T 3oh8_A 259 GHDRGDEILTEESESGDDFLAEVCRDWEHATAP----ASDAGKRVAFIRTGVALSGR 311 (516)
T ss_dssp CSEEEEEEECTTSCCCSSHHHHHHHHHHHTTHH----HHHTTCEEEEEEECEEEBTT
T ss_pred cCCCCCCccCCCCCCCcChHHHHHHHHHHHHHH----HHhCCCCEEEEEeeEEECCC
Confidence 1 0112345688888877765443 23458999999999998864
|
| >2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=6.5e-12 Score=128.17 Aligned_cols=160 Identities=16% Similarity=0.126 Sum_probs=112.4
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCC-----CEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEcc
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSG-----DRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACD 251 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~G-----a~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~D 251 (512)
+++|+||||+|+||.+++++|+++| ++|++++|+..... + ...++.++.+|
T Consensus 1 ~~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~V~~~~r~~~~~~-----~-------------------~~~~~~~~~~D 56 (364)
T 2v6g_A 1 SSVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAW-----H-------------------EDNPINYVQCD 56 (364)
T ss_dssp CEEEEEETTTSHHHHHHHHHTTSTTCTTCSEEEEEEESSCCCSC-----C-------------------CSSCCEEEECC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCCCCceEEEEEeCCCCccc-----c-------------------ccCceEEEEee
Confidence 4689999999999999999999999 99999999865421 0 12467889999
Q ss_pred CCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEE---
Q 010380 252 VCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIF--- 328 (512)
Q Consensus 252 ltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV--- 328 (512)
++|.+++.++++. ..++|+|||+||... ++.+..+++|+.++.++++++.+... +-.++|
T Consensus 57 l~d~~~~~~~~~~----~~~~d~vih~a~~~~----------~~~~~~~~~n~~~~~~l~~a~~~~~~---~~~~~v~~~ 119 (364)
T 2v6g_A 57 ISDPDDSQAKLSP----LTDVTHVFYVTWANR----------STEQENCEANSKMFRNVLDAVIPNCP---NLKHISLQT 119 (364)
T ss_dssp TTSHHHHHHHHTT----CTTCCEEEECCCCCC----------SSHHHHHHHHHHHHHHHHHHHTTTCT---TCCEEEEEC
T ss_pred cCCHHHHHHHHhc----CCCCCEEEECCCCCc----------chHHHHHHHhHHHHHHHHHHHHHhcc---ccceEEecc
Confidence 9999988776643 234999999999742 23577899999999999998865421 233565
Q ss_pred ----eecCCCCCCC------C-------CCCcchhhHHHHHHHHHHHHHHHHhCCCC-eEEEEEeCCcccCCcc
Q 010380 329 ----NMDGAGSGGS------S-------TPLTAVYGSTKCGLRQLQASLFKESKRSK-VGVHTASPGMVLTDLL 384 (512)
Q Consensus 329 ----~vSS~~a~~~------~-------~p~~~~Y~aSKaAl~~l~~sLa~El~~~G-IrVn~V~PG~V~T~~~ 384 (512)
++||...... + .|....|. +.+.+.+.++. ..| +++.++.|+.|-.+..
T Consensus 120 g~~i~~Ss~~vyg~~~~~~~~~~E~~~~~~~~~~y~----~~E~~~~~~~~---~~~~~~~~ilRp~~v~G~~~ 186 (364)
T 2v6g_A 120 GRKHYMGPFESYGKIESHDPPYTEDLPRLKYMNFYY----DLEDIMLEEVE---KKEGLTWSVHRPGNIFGFSP 186 (364)
T ss_dssp CTHHHHCCGGGTTTSCCCCSSBCTTSCCCSSCCHHH----HHHHHHHHHHT---TSTTCEEEEEEESSEECCCT
T ss_pred CceEEEechhhccccccCCCCCCccccCCccchhhH----HHHHHHHHHhh---cCCCceEEEECCCceeCCCC
Confidence 6777521111 0 12234563 33444444332 245 9999999999987643
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=1e-12 Score=131.39 Aligned_cols=111 Identities=15% Similarity=0.186 Sum_probs=85.4
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
.++++|+++||||++|||+++++.|+++|++|++++|+.++++++.+++... ..+.++.+|+
T Consensus 115 ~~l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~~~~~l~~~~~~~------------------~~~~~~~~D~ 176 (287)
T 1lu9_A 115 GSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKR------------------FKVNVTAAET 176 (287)
T ss_dssp SCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHH------------------HTCCCEEEEC
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHHHHHhc------------------CCcEEEEecC
Confidence 4578999999999999999999999999999999999998888777776541 1245678999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCH-HHHHHHHHhhhhhHH
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTN-EEIEQIVSTNLVGSI 308 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~-e~~~~~~~vNv~g~~ 308 (512)
+|+++++++++ .+|+||||||+.....++.+.+. ++++.++++|+.+++
T Consensus 177 ~~~~~~~~~~~-------~~DvlVn~ag~g~~~~~~~~~~~~~~~~~~~dvn~~~~~ 226 (287)
T 1lu9_A 177 ADDASRAEAVK-------GAHFVFTAGAIGLELLPQAAWQNESSIEIVADYNAQPPL 226 (287)
T ss_dssp CSHHHHHHHTT-------TCSEEEECCCTTCCSBCHHHHTTCTTCCEEEECCCSSSC
T ss_pred CCHHHHHHHHH-------hCCEEEECCCccccCCChhHcCchHHHHHHHHhhhhhhH
Confidence 99988776654 47999999986431222323333 555667888888766
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A | Back alignment and structure |
|---|
Probab=99.25 E-value=8.6e-12 Score=128.31 Aligned_cols=135 Identities=19% Similarity=0.138 Sum_probs=105.3
Q ss_pred EEEEECCCChHHHHHHHHHHHCCC-EEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhh
Q 010380 179 NVVITGSTRGLGKALAREFLLSGD-RVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPAD 257 (512)
Q Consensus 179 ~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~s 257 (512)
+|+||||+|+||++++++|+++|+ +|+.++|+ +|+++
T Consensus 2 ~VlVtGatG~iG~~l~~~L~~~g~~~v~~~d~~------------------------------------------~d~~~ 39 (369)
T 3st7_A 2 NIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQ------------------------------------------TKEEE 39 (369)
T ss_dssp EEEEETTTSHHHHHHHHHHHHHCCCEEEECCTT------------------------------------------CCHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCEEEEECCC------------------------------------------CCHHH
Confidence 589999999999999999999998 77766552 45666
Q ss_pred HHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCCC
Q 010380 258 VQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGG 337 (512)
Q Consensus 258 v~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~~ 337 (512)
++++++ .+|+|||+||...+ ++.+..+++|+.++.++++++. +.+.+.++|++||.. ..
T Consensus 40 l~~~~~-------~~d~Vih~a~~~~~---------~~~~~~~~~n~~~~~~l~~a~~----~~~~~~~~v~~Ss~~-~~ 98 (369)
T 3st7_A 40 LESALL-------KADFIVHLAGVNRP---------EHDKEFSLGNVSYLDHVLDILT----RNTKKPAILLSSSIQ-AT 98 (369)
T ss_dssp HHHHHH-------HCSEEEECCCSBCT---------TCSTTCSSSCCBHHHHHHHHHT----TCSSCCEEEEEEEGG-GG
T ss_pred HHHHhc-------cCCEEEECCcCCCC---------CCHHHHHHHHHHHHHHHHHHHH----HhCCCCeEEEeCchh-hc
Confidence 666655 38999999997642 1234467889999988887763 332224899999873 22
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCc
Q 010380 338 SSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDL 383 (512)
Q Consensus 338 ~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~ 383 (512)
. ...|+.+|.+.+.+.+.++.+. |+++..+.|+.+-.+.
T Consensus 99 ~----~~~Y~~sK~~~E~~~~~~~~~~---g~~~~i~R~~~v~G~~ 137 (369)
T 3st7_A 99 Q----DNPYGESKLQGEQLLREYAEEY---GNTVYIYRWPNLFGKW 137 (369)
T ss_dssp S----CSHHHHHHHHHHHHHHHHHHHH---CCCEEEEEECEEECTT
T ss_pred C----CCCchHHHHHHHHHHHHHHHHh---CCCEEEEECCceeCCC
Confidence 1 5789999999999999999886 6899999999987764
|
| >1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=5e-12 Score=122.01 Aligned_cols=189 Identities=13% Similarity=0.102 Sum_probs=113.2
Q ss_pred CCCCCEEEEECC----------------CChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCc
Q 010380 174 KAGPRNVVITGS----------------TRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237 (512)
Q Consensus 174 ~l~gk~vLVTGa----------------ssGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~ 237 (512)
++.||+|||||| |||||+++|++|+++|++|++++++.. ++ . +
T Consensus 5 ~l~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~Ga~V~l~~~~~~-l~-----~----~----------- 63 (226)
T 1u7z_A 5 DLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVS-LP-----T----P----------- 63 (226)
T ss_dssp TTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCC-CC-----C----C-----------
T ss_pred CCCCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCCCEEEEEECCcc-cc-----c----C-----------
Confidence 578999999999 689999999999999999999988642 10 0 0
Q ss_pred ccccCceEEEEEccCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHH--HHhhhhhHHHHHHHHH
Q 010380 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQI--VSTNLVGSILCTREAM 315 (512)
Q Consensus 238 ~~~~g~~v~~v~~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~--~~vNv~g~~~l~k~~l 315 (512)
.+ + -.+|+++ ++++++.+.+.++++|++|||||+.. +.+. +.+.+.+.+. -+.|+.-.+..+.-++
T Consensus 64 ---~g--~--~~~dv~~---~~~~~~~v~~~~~~~Dili~~Aav~d-~~p~-~~~~~KIkk~~~~~~~l~l~L~~~pdIL 131 (226)
T 1u7z_A 64 ---PF--V--KRVDVMT---ALEMEAAVNASVQQQNIFIGCAAVAD-YRAA-TVAPEKIKKQATQGDELTIKMVKNPDIV 131 (226)
T ss_dssp ---TT--E--EEEECCS---HHHHHHHHHHHGGGCSEEEECCBCCS-EEES-SCCSSCC-------CEEEEEEEECCCHH
T ss_pred ---CC--C--eEEccCc---HHHHHHHHHHhcCCCCEEEECCcccC-CCCc-cCChHHhccccccCCceEEEEeecHHHH
Confidence 11 1 2457766 45566777888899999999999876 4444 3344445551 1334444555555667
Q ss_pred HHHHhCCCCCeE-EeecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCc-ccCCcccCCc--chh
Q 010380 316 RVMRDQPKGGHI-FNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGM-VLTDLLLSGS--TIQ 391 (512)
Q Consensus 316 p~m~~~~~~g~I-V~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~-V~T~~~~~~~--~~~ 391 (512)
+.+.+....+.+ |-+. . +. +.+.+....++.++|+.+.+.+|-. ..+.|..... ...
T Consensus 132 ~~l~~~~~~~~~~VGFa----a---------Et------~~l~e~A~~kL~~k~~d~ivaN~~~~~~~~f~~~~n~v~li 192 (226)
T 1u7z_A 132 AGVAALKDHRPYVVGFA----A---------ET------NNVEEYARQKRIRKNLDLICANDVSQPTQGFNSDNNALHLF 192 (226)
T ss_dssp HHHHHCSSSCCEEEEEE----E---------ES------SSHHHHHHHHHHHHTCSEEEEEECSSTTSSTTSSEEEEEEE
T ss_pred HHHHhhhcCCcEEEEcc----h---------hh------chHHHHHHHHHHhcCCCEEEEeeccccCCccCCCceEEEEE
Confidence 777653122332 2221 1 11 2266666777777788887777765 3344432210 000
Q ss_pred hh-hhhhhhcCCHHHHHHHhcccc
Q 010380 392 NK-QMFNIICELPETVARTLVPRI 414 (512)
Q Consensus 392 ~~-~~~~~~~~~pe~vA~~~l~r~ 414 (512)
.+ ....+...+++++|+.++..+
T Consensus 193 ~~~~~~~~~~~sK~~vA~~I~~~i 216 (226)
T 1u7z_A 193 WQDGDKVLPLERKELLGQLLLDEI 216 (226)
T ss_dssp ETTEEEEEEEEEHHHHHHHHHHHH
T ss_pred eCCCcEecCCCCHHHHHHHHHHHH
Confidence 00 011223346788888777544
|
| >4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.83 E-value=3.1e-08 Score=98.42 Aligned_cols=152 Identities=18% Similarity=0.211 Sum_probs=98.6
Q ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhhH
Q 010380 179 NVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPADV 258 (512)
Q Consensus 179 ~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~sv 258 (512)
+||||||||-||.+++++|.++|++|+++.|++.. ..+ ..|. +
T Consensus 2 kILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~~-----------------------------~~~---~~~~-----~ 44 (298)
T 4b4o_A 2 RVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGP-----------------------------GRI---TWDE-----L 44 (298)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCT-----------------------------TEE---EHHH-----H
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCc-----------------------------Cee---ecch-----h
Confidence 48999999999999999999999999999997542 111 1121 1
Q ss_pred HHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCCC-
Q 010380 259 QKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGG- 337 (512)
Q Consensus 259 ~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~~- 337 (512)
..+....+|.+||.||... ..+....+.+..+..++.|+.++-++.+++... ..+...+|+.||.....
T Consensus 45 ------~~~~l~~~d~vihla~~~i-~~~~~~~~~~~~~~~~~~~v~~t~~l~~~~~~~---~~~~~~~i~~Ss~~vyg~ 114 (298)
T 4b4o_A 45 ------AASGLPSCDAAVNLAGENI-LNPLRRWNETFQKEVLGSRLETTQLLAKAITKA---PQPPKAWVLVTGVAYYQP 114 (298)
T ss_dssp ------HHHCCCSCSEEEECCCCCS-SCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHC---SSCCSEEEEEEEGGGSCC
T ss_pred ------hHhhccCCCEEEEeccCcc-cchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHh---CCCceEEEEEeeeeeecC
Confidence 1123457999999998654 334445577777888999998887776655332 11234566666652111
Q ss_pred ---------CCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCC
Q 010380 338 ---------SSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTD 382 (512)
Q Consensus 338 ---------~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~ 382 (512)
.+......|+..|...+. .......++++..+.||.|-.|
T Consensus 115 ~~~~~~~E~~p~~~~~~~~~~~~~~e~-----~~~~~~~~~~~~~~r~~~v~g~ 163 (298)
T 4b4o_A 115 SLTAEYDEDSPGGDFDFFSNLVTKWEA-----AARLPGDSTRQVVVRSGVVLGR 163 (298)
T ss_dssp CSSCCBCTTCCCSCSSHHHHHHHHHHH-----HHCCSSSSSEEEEEEECEEECT
T ss_pred CCCCcccccCCccccchhHHHHHHHHH-----HHHhhccCCceeeeeeeeEEcC
Confidence 111222345555444332 2234567899999999998776
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=4e-09 Score=107.28 Aligned_cols=162 Identities=14% Similarity=0.097 Sum_probs=105.8
Q ss_pred CEEEEECCCChHHHHHHHHHHHCCC-------EEEEEEcCh--hhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEE
Q 010380 178 RNVVITGSTRGLGKALAREFLLSGD-------RVVVASRSS--ESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGI 248 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~Ga-------~Vvl~~R~~--~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v 248 (512)
.+|+||||+|.||..++..|+++|+ +|+++++++ ++++....++.. ..+.++
T Consensus 5 mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~-------------------~~~~~~ 65 (327)
T 1y7t_A 5 VRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELED-------------------CAFPLL 65 (327)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHT-------------------TTCTTE
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCchhhccchhhhhhc-------------------cccccc
Confidence 4699999999999999999999996 899999874 223222223321 001112
Q ss_pred EccCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEE
Q 010380 249 ACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIF 328 (512)
Q Consensus 249 ~~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV 328 (512)
.|+.+.+++.+.+ ...|++||.||... .+ ..+ .+..+++|+.+...+.+++...- +...+++
T Consensus 66 -~di~~~~~~~~a~-------~~~D~Vih~Ag~~~--~~--~~~---~~~~~~~Nv~~t~~l~~a~~~~~---~~~~~vv 127 (327)
T 1y7t_A 66 -AGLEATDDPKVAF-------KDADYALLVGAAPR--KA--GME---RRDLLQVNGKIFTEQGRALAEVA---KKDVKVL 127 (327)
T ss_dssp -EEEEEESCHHHHT-------TTCSEEEECCCCCC--CT--TCC---HHHHHHHHHHHHHHHHHHHHHHS---CTTCEEE
T ss_pred -CCeEeccChHHHh-------CCCCEEEECCCcCC--CC--CCC---HHHHHHHHHHHHHHHHHHHHhhc---CCCeEEE
Confidence 4666655544433 36899999999854 11 223 35678999999999988876541 1235788
Q ss_pred eecCCCC-------CCC-CCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcc
Q 010380 329 NMDGAGS-------GGS-STPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMV 379 (512)
Q Consensus 329 ~vSS~~a-------~~~-~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V 379 (512)
++|+... ... +.+....|+.+|...+.+...++..+ |+.+..|+|..|
T Consensus 128 v~snp~~~~~~~~~~~~~~~~p~~~yg~tkl~~er~~~~~a~~~---g~~~~~vr~~~V 183 (327)
T 1y7t_A 128 VVGNPANTNALIAYKNAPGLNPRNFTAMTRLDHNRAKAQLAKKT---GTGVDRIRRMTV 183 (327)
T ss_dssp ECSSSHHHHHHHHHHTCTTSCGGGEEECCHHHHHHHHHHHHHHH---TCCGGGEECCEE
T ss_pred EeCCchhhhHHHHHHHcCCCChhheeccchHHHHHHHHHHHHHh---CcChhheeeeEE
Confidence 8776520 011 24455679999999999998888876 344444444433
|
| >2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=98.76 E-value=3.1e-09 Score=102.79 Aligned_cols=92 Identities=16% Similarity=0.278 Sum_probs=68.2
Q ss_pred CCCEEEEECC----------------CChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCccc
Q 010380 176 GPRNVVITGS----------------TRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239 (512)
Q Consensus 176 ~gk~vLVTGa----------------ssGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~ 239 (512)
.||+|||||| ||++|.++|++|+++|++|++++|+..... .
T Consensus 2 ~gk~vlVTgG~T~E~IDpVR~ItN~SSG~mG~aiA~~~~~~Ga~V~lv~~~~~~~~-----------------------~ 58 (232)
T 2gk4_A 2 NAMKILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSAGYEVCLITTKRALKP-----------------------E 58 (232)
T ss_dssp -CCEEEEECSBCEEESSSSEEEEECCCCHHHHHHHHHHHHTTCEEEEEECTTSCCC-----------------------C
T ss_pred CCCEEEEeCCCcccccCceeeccCCCCCHHHHHHHHHHHHCCCEEEEEeCCccccc-----------------------c
Confidence 5899999999 788999999999999999999999743100 0
Q ss_pred ccCceEEEEEccCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHH
Q 010380 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297 (512)
Q Consensus 240 ~~g~~v~~v~~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~ 297 (512)
....+ |+.+.++++++++.+.+.++++|++|+|||+.. +.+....+.+++.
T Consensus 59 -~~~~~-----~~~~v~s~~em~~~v~~~~~~~Dili~aAAvsD-~~p~~~~~~e~~~ 109 (232)
T 2gk4_A 59 -PHPNL-----SIREITNTKDLLIEMQERVQDYQVLIHSMAVSD-YTPVYMTGLEEVQ 109 (232)
T ss_dssp -CCTTE-----EEEECCSHHHHHHHHHHHGGGCSEEEECSBCCS-EEEEEEEEHHHHH
T ss_pred -CCCCe-----EEEEHhHHHHHHHHHHHhcCCCCEEEEcCcccc-ccchhhcchhhhh
Confidence 01122 344445777788888888899999999999976 5666544555444
|
| >3gxh_A Putative phosphatase (DUF442); YP_001181608.1, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.40A {Shewanella putrefaciens cn-32} PDB: 3gxg_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=4.8e-08 Score=88.86 Aligned_cols=77 Identities=14% Similarity=0.058 Sum_probs=63.1
Q ss_pred hHHHHHHHHHHHCCCEEEEEEcChhhHH---HHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCCh--hhHHHHH
Q 010380 188 GLGKALAREFLLSGDRVVVASRSSESVR---MTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEP--ADVQKLS 262 (512)
Q Consensus 188 GIG~aiA~~La~~Ga~Vvl~~R~~~~l~---~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~--~sv~~~~ 262 (512)
-++.++++.|++.|++|++..|+++... +..+.+++ .|.++..+++|++++ +++++++
T Consensus 27 ~p~~a~a~~La~~Ga~vvi~~r~~~e~~~~~~~~~~~~~-----------------~G~~~~~i~~Dv~~~~~~~v~~~~ 89 (157)
T 3gxh_A 27 LPNEQQFSLLKQAGVDVVINLMPDSSKDAHPDEGKLVTQ-----------------AGMDYVYIPVDWQNPKVEDVEAFF 89 (157)
T ss_dssp CCCHHHHHHHHHTTCCEEEECSCTTSTTSCTTHHHHHHH-----------------TTCEEEECCCCTTSCCHHHHHHHH
T ss_pred CCCHHHHHHHHHcCCCEEEECCCcccccccccHHHHHHH-----------------cCCeEEEecCCCCCCCHHHHHHHH
Confidence 3779999999999999999988765432 12333333 467888999999999 9999999
Q ss_pred HHHHHHcCCCcccccccccC
Q 010380 263 NFAVNEFGSIDIWINNAGTN 282 (512)
Q Consensus 263 ~~i~~~~g~IDvLInnAG~~ 282 (512)
+.+.+.+|+ |+||||||+.
T Consensus 90 ~~i~~~~G~-dVLVnnAgg~ 108 (157)
T 3gxh_A 90 AAMDQHKGK-DVLVHCLANY 108 (157)
T ss_dssp HHHHHTTTS-CEEEECSBSH
T ss_pred HHHHhcCCC-CEEEECCCCC
Confidence 999998999 9999999974
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=98.46 E-value=3.3e-07 Score=77.56 Aligned_cols=74 Identities=22% Similarity=0.218 Sum_probs=60.1
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCC-CEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCCh
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSG-DRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEP 255 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~G-a~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~ 255 (512)
+++++|+|+ |++|.++++.|.++| ++|++++|++++++... . ..+..+.+|+++.
T Consensus 5 ~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~----~-------------------~~~~~~~~d~~~~ 60 (118)
T 3ic5_A 5 RWNICVVGA-GKIGQMIAALLKTSSNYSVTVADHDLAALAVLN----R-------------------MGVATKQVDAKDE 60 (118)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH----T-------------------TTCEEEECCTTCH
T ss_pred cCeEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH----h-------------------CCCcEEEecCCCH
Confidence 568999999 999999999999999 89999999987765432 1 2355688999998
Q ss_pred hhHHHHHHHHHHHcCCCccccccccc
Q 010380 256 ADVQKLSNFAVNEFGSIDIWINNAGT 281 (512)
Q Consensus 256 ~sv~~~~~~i~~~~g~IDvLInnAG~ 281 (512)
+++.++++ .+|++|++++.
T Consensus 61 ~~~~~~~~-------~~d~vi~~~~~ 79 (118)
T 3ic5_A 61 AGLAKALG-------GFDAVISAAPF 79 (118)
T ss_dssp HHHHHHTT-------TCSEEEECSCG
T ss_pred HHHHHHHc-------CCCEEEECCCc
Confidence 87766543 68999999963
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=98.45 E-value=6.1e-07 Score=93.95 Aligned_cols=82 Identities=17% Similarity=0.213 Sum_probs=69.6
Q ss_pred CEEEEECCCChHHHHHHHHHHHCC---CEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCC
Q 010380 178 RNVVITGSTRGLGKALAREFLLSG---DRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCE 254 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~G---a~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd 254 (512)
++|+|+|| ||||+++++.|+++| .+|++++|+.++++++.+++... .+.++..+.+|++|
T Consensus 2 ~kVlIiGa-GgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~----------------~~~~~~~~~~D~~d 64 (405)
T 4ina_A 2 AKVLQIGA-GGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAK----------------GYGEIDITTVDADS 64 (405)
T ss_dssp CEEEEECC-SHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHT----------------TCCCCEEEECCTTC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhh----------------cCCceEEEEecCCC
Confidence 46899999 899999999999999 49999999999988877776441 12457889999999
Q ss_pred hhhHHHHHHHHHHHcCCCccccccccc
Q 010380 255 PADVQKLSNFAVNEFGSIDIWINNAGT 281 (512)
Q Consensus 255 ~~sv~~~~~~i~~~~g~IDvLInnAG~ 281 (512)
.++++++++.. ++|+||||+|.
T Consensus 65 ~~~l~~~l~~~-----~~DvVin~ag~ 86 (405)
T 4ina_A 65 IEELVALINEV-----KPQIVLNIALP 86 (405)
T ss_dssp HHHHHHHHHHH-----CCSEEEECSCG
T ss_pred HHHHHHHHHhh-----CCCEEEECCCc
Confidence 99999988865 69999999985
|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=8.1e-10 Score=117.40 Aligned_cols=45 Identities=20% Similarity=0.261 Sum_probs=39.9
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHH
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTV 218 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~ 218 (512)
+++.||+++|||++ |||+++|+.|+..|++|+++++++.++.++.
T Consensus 261 ~~L~GKtVvVtGaG-gIG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa 305 (488)
T 3ond_A 261 VMIAGKVAVVAGYG-DVGKGCAAALKQAGARVIVTEIDPICALQAT 305 (488)
T ss_dssp CCCTTCEEEEECCS-HHHHHHHHHHHHTTCEEEEECSCHHHHHHHH
T ss_pred CcccCCEEEEECCC-HHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence 46899999999987 9999999999999999999999987765443
|
| >2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=3.4e-08 Score=106.87 Aligned_cols=101 Identities=19% Similarity=0.216 Sum_probs=67.7
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
++++|+++|||| ||+|+++|+.|++.|++|++++|+.++++++.+++ +.++. ++.
T Consensus 361 ~l~~k~vlV~Ga-GGig~aia~~L~~~G~~V~i~~R~~~~a~~la~~~--------------------~~~~~----~~~ 415 (523)
T 2o7s_A 361 PLASKTVVVIGA-GGAGKALAYGAKEKGAKVVIANRTYERALELAEAI--------------------GGKAL----SLT 415 (523)
T ss_dssp -----CEEEECC-SHHHHHHHHHHHHHCC-CEEEESSHHHHHHHHHHT--------------------TC-CE----ETT
T ss_pred ccCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc--------------------CCcee----eHH
Confidence 467899999999 59999999999999999999999988877655443 11111 222
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCC----CCCCcCCCHHHHHHHHHhhhhhHH
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKG----FKPLLQFTNEEIEQIVSTNLVGSI 308 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~----~~~~~~~s~e~~~~~~~vNv~g~~ 308 (512)
| +.++ ..+.+|+||||+|+... ..++.+.+.+++..++++|+.+..
T Consensus 416 d---l~~~------~~~~~DilVN~agvg~~~~~~~~~~~~~~~~~~~~v~Dvny~p~~ 465 (523)
T 2o7s_A 416 D---LDNY------HPEDGMVLANTTSMGMQPNVEETPISKDALKHYALVFDAVYTPRI 465 (523)
T ss_dssp T---TTTC--------CCSEEEEECSSTTCTTCTTCCSSCTTTGGGEEEEEECCCSSSS
T ss_pred H---hhhc------cccCceEEEECCCCCCCCCCCCCCCChHHcCcCcEEEEEeeCCcc
Confidence 2 1100 12358999999998531 135666677888899999998764
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=4.8e-07 Score=91.63 Aligned_cols=79 Identities=19% Similarity=0.279 Sum_probs=61.2
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCCh
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEP 255 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~ 255 (512)
.|++++||||++|||.++++.+...|++|++++|++++++.+ +++ +.. ..+|.++.
T Consensus 145 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~-~~~--------------------g~~---~~~d~~~~ 200 (333)
T 1v3u_A 145 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYL-KQI--------------------GFD---AAFNYKTV 200 (333)
T ss_dssp SSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHH-HHT--------------------TCS---EEEETTSC
T ss_pred CCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-Hhc--------------------CCc---EEEecCCH
Confidence 589999999999999999999999999999999998776544 222 221 23588875
Q ss_pred hhHHHHHHHHHHHcCCCcccccccc
Q 010380 256 ADVQKLSNFAVNEFGSIDIWINNAG 280 (512)
Q Consensus 256 ~sv~~~~~~i~~~~g~IDvLInnAG 280 (512)
+++.+.+.++.. +++|++|+|+|
T Consensus 201 ~~~~~~~~~~~~--~~~d~vi~~~g 223 (333)
T 1v3u_A 201 NSLEEALKKASP--DGYDCYFDNVG 223 (333)
T ss_dssp SCHHHHHHHHCT--TCEEEEEESSC
T ss_pred HHHHHHHHHHhC--CCCeEEEECCC
Confidence 566665555433 57999999998
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=98.29 E-value=1e-06 Score=82.30 Aligned_cols=79 Identities=16% Similarity=0.173 Sum_probs=57.3
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCCh
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEP 255 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~ 255 (512)
.|++++||||++|||.++++.+...|++|++++|++++++.+ ++ .+.. ..+|.++.
T Consensus 38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~----~~-----------------~g~~---~~~d~~~~ 93 (198)
T 1pqw_A 38 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREML----SR-----------------LGVE---YVGDSRSV 93 (198)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHH----HT-----------------TCCS---EEEETTCS
T ss_pred CCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHH----HH-----------------cCCC---EEeeCCcH
Confidence 579999999999999999999999999999999997765432 11 1222 23577776
Q ss_pred hhHHHHHHHHHHHcCCCcccccccc
Q 010380 256 ADVQKLSNFAVNEFGSIDIWINNAG 280 (512)
Q Consensus 256 ~sv~~~~~~i~~~~g~IDvLInnAG 280 (512)
+..+.+.+... .+++|++|+|+|
T Consensus 94 ~~~~~~~~~~~--~~~~D~vi~~~g 116 (198)
T 1pqw_A 94 DFADEILELTD--GYGVDVVLNSLA 116 (198)
T ss_dssp THHHHHHHHTT--TCCEEEEEECCC
T ss_pred HHHHHHHHHhC--CCCCeEEEECCc
Confidence 55444433221 136999999997
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=98.29 E-value=2.1e-07 Score=92.78 Aligned_cols=82 Identities=24% Similarity=0.373 Sum_probs=61.4
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
.++++|+++|||++ |+|+++|+.|++.| +|++++|+.++++++.+++..... ... .+.+|+
T Consensus 124 ~~l~~k~vlV~GaG-giG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~~~~~~~----------------~~~-~~~~d~ 184 (287)
T 1nvt_A 124 GRVKDKNIVIYGAG-GAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLN----------------KKF-GEEVKF 184 (287)
T ss_dssp CCCCSCEEEEECCS-HHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHT----------------CCH-HHHEEE
T ss_pred CCcCCCEEEEECch-HHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHhhhcc----------------ccc-ceeEEE
Confidence 35789999999997 99999999999999 999999999888877776644210 000 123455
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNK 283 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~ 283 (512)
++. .+.++++|+||||+|...
T Consensus 185 ~~~----------~~~~~~~DilVn~ag~~~ 205 (287)
T 1nvt_A 185 SGL----------DVDLDGVDIIINATPIGM 205 (287)
T ss_dssp ECT----------TCCCTTCCEEEECSCTTC
T ss_pred eeH----------HHhhCCCCEEEECCCCCC
Confidence 442 345678999999999754
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=98.21 E-value=1.3e-06 Score=92.64 Aligned_cols=78 Identities=21% Similarity=0.204 Sum_probs=61.2
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCCh
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEP 255 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~ 255 (512)
++|+|+||| +||+|+++++.|++.|++|++++|+.++++++.+++ ..+..+.+|++|.
T Consensus 2 ~~k~VlViG-aG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~la~~~---------------------~~~~~~~~Dv~d~ 59 (450)
T 1ff9_A 2 ATKSVLMLG-SGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGV---------------------QHSTPISLDVNDD 59 (450)
T ss_dssp CCCEEEEEC-CSTTHHHHHHHHHTTTCEEEEEESSHHHHHHTTTTC---------------------TTEEEEECCTTCH
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhCcCEEEEEECCHHHHHHHHHhc---------------------CCceEEEeecCCH
Confidence 468899998 799999999999999999999999987654332111 1366788999998
Q ss_pred hhHHHHHHHHHHHcCCCcccccccccC
Q 010380 256 ADVQKLSNFAVNEFGSIDIWINNAGTN 282 (512)
Q Consensus 256 ~sv~~~~~~i~~~~g~IDvLInnAG~~ 282 (512)
+++.++++ .+|+||||++..
T Consensus 60 ~~l~~~l~-------~~DvVIn~a~~~ 79 (450)
T 1ff9_A 60 AALDAEVA-------KHDLVISLIPYT 79 (450)
T ss_dssp HHHHHHHT-------TSSEEEECCC--
T ss_pred HHHHHHHc-------CCcEEEECCccc
Confidence 88776653 699999999864
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.13 E-value=3.4e-06 Score=87.14 Aligned_cols=107 Identities=20% Similarity=0.272 Sum_probs=74.3
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
..+.+++++|+|+ |+||+++++.+...|++|++++|++++++.+.+.+ +.. +.+|.
T Consensus 162 ~~l~~~~V~ViGa-G~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~--------------------g~~---~~~~~ 217 (369)
T 2eez_A 162 PGVAPASVVILGG-GTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVF--------------------GGR---VITLT 217 (369)
T ss_dssp TBBCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT--------------------TTS---EEEEE
T ss_pred CCCCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhc--------------------Cce---EEEec
Confidence 3578899999999 99999999999999999999999988765443221 122 45677
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
++.+++.+++. ..|++|+++|.... . .+..+.+..++.|+ +++.||++++
T Consensus 218 ~~~~~l~~~~~-------~~DvVi~~~g~~~~-~-------------------~~~li~~~~l~~mk---~gg~iV~v~~ 267 (369)
T 2eez_A 218 ATEANIKKSVQ-------HADLLIGAVLVPGA-K-------------------APKLVTRDMLSLMK---EGAVIVDVAV 267 (369)
T ss_dssp CCHHHHHHHHH-------HCSEEEECCC---------------------------CCSCHHHHTTSC---TTCEEEECC-
T ss_pred CCHHHHHHHHh-------CCCEEEECCCCCcc-c-------------------cchhHHHHHHHhhc---CCCEEEEEec
Confidence 88777666543 58999999996420 0 01223455667774 3689999975
Q ss_pred C
Q 010380 333 A 333 (512)
Q Consensus 333 ~ 333 (512)
.
T Consensus 268 ~ 268 (369)
T 2eez_A 268 D 268 (369)
T ss_dssp -
T ss_pred C
Confidence 4
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.07 E-value=8.5e-06 Score=82.99 Aligned_cols=80 Identities=18% Similarity=0.139 Sum_probs=61.6
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCCh
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEP 255 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~ 255 (512)
.|++++|+||++|||+++++.+...|++|++++|++++++.+ +++ +.. ..+|+++.
T Consensus 169 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~-~~~--------------------g~~---~~~d~~~~ 224 (347)
T 2hcy_A 169 AGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELF-RSI--------------------GGE---VFIDFTKE 224 (347)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHH-HHT--------------------TCC---EEEETTTC
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHH-HHc--------------------CCc---eEEecCcc
Confidence 579999999999999999999999999999999998776432 221 222 23488876
Q ss_pred hhHHHHHHHHHHHcCCCccccccccc
Q 010380 256 ADVQKLSNFAVNEFGSIDIWINNAGT 281 (512)
Q Consensus 256 ~sv~~~~~~i~~~~g~IDvLInnAG~ 281 (512)
+++.+.+.++... ++|++|+|+|.
T Consensus 225 ~~~~~~~~~~~~~--~~D~vi~~~g~ 248 (347)
T 2hcy_A 225 KDIVGAVLKATDG--GAHGVINVSVS 248 (347)
T ss_dssp SCHHHHHHHHHTS--CEEEEEECSSC
T ss_pred HhHHHHHHHHhCC--CCCEEEECCCc
Confidence 7777766665443 79999999984
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=2.2e-05 Score=79.31 Aligned_cols=85 Identities=18% Similarity=0.251 Sum_probs=63.8
Q ss_pred cCCCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcC---hhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEE
Q 010380 172 HCKAGPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRS---SESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAG 247 (512)
Q Consensus 172 ~~~l~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~---~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~ 247 (512)
..++++|+++|+|+ ||+|++++..|++.|+ +|++++|+ .++++++.+++... .+..+
T Consensus 149 ~~~l~gk~~lVlGa-GG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~----------------~~~~~-- 209 (315)
T 3tnl_A 149 GHDIIGKKMTICGA-GGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSK----------------TDCKA-- 209 (315)
T ss_dssp TCCCTTSEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHH----------------SSCEE--
T ss_pred CCCccCCEEEEECC-ChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhh----------------cCCce--
Confidence 35688999999998 7999999999999998 89999999 88888777777552 12223
Q ss_pred EEccCCChhhHHHHHHHHHHHcCCCcccccccccC
Q 010380 248 IACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTN 282 (512)
Q Consensus 248 v~~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~ 282 (512)
...++.+.+++.+.+. ..|+|||+....
T Consensus 210 ~~~~~~~~~~l~~~l~-------~aDiIINaTp~G 237 (315)
T 3tnl_A 210 QLFDIEDHEQLRKEIA-------ESVIFTNATGVG 237 (315)
T ss_dssp EEEETTCHHHHHHHHH-------TCSEEEECSSTT
T ss_pred EEeccchHHHHHhhhc-------CCCEEEECccCC
Confidence 3446666555443322 589999988654
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=98.03 E-value=5.9e-06 Score=81.61 Aligned_cols=48 Identities=10% Similarity=0.141 Sum_probs=42.2
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHH
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTEL 221 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el 221 (512)
.++++|+++|+|+ ||+|+++++.|++.|++|++++|+.++++++.+++
T Consensus 115 ~~l~~k~vlViGa-Gg~g~a~a~~L~~~G~~V~v~~R~~~~~~~la~~~ 162 (271)
T 1nyt_A 115 FIRPGLRILLIGA-GGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLF 162 (271)
T ss_dssp CCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHT
T ss_pred cCcCCCEEEEECC-cHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHh
Confidence 3578999999998 79999999999999999999999998877666554
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=3.7e-06 Score=85.38 Aligned_cols=81 Identities=21% Similarity=0.256 Sum_probs=60.3
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCCh
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEP 255 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~ 255 (512)
.|++++|+||+||||.++++.+...|++|++++|++++++.+.+++ +.. ..+|.++.
T Consensus 155 ~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~~--------------------g~~---~~~d~~~~ 211 (345)
T 2j3h_A 155 EGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKF--------------------GFD---DAFNYKEE 211 (345)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTS--------------------CCS---EEEETTSC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc--------------------CCc---eEEecCCH
Confidence 5899999999999999999999999999999999987765433221 222 23477766
Q ss_pred hhHHHHHHHHHHHcCCCccccccccc
Q 010380 256 ADVQKLSNFAVNEFGSIDIWINNAGT 281 (512)
Q Consensus 256 ~sv~~~~~~i~~~~g~IDvLInnAG~ 281 (512)
+++.+.+.++.. +++|++|+|+|.
T Consensus 212 ~~~~~~~~~~~~--~~~d~vi~~~g~ 235 (345)
T 2j3h_A 212 SDLTAALKRCFP--NGIDIYFENVGG 235 (345)
T ss_dssp SCSHHHHHHHCT--TCEEEEEESSCH
T ss_pred HHHHHHHHHHhC--CCCcEEEECCCH
Confidence 555555554432 579999999983
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=97.98 E-value=4.7e-06 Score=84.09 Aligned_cols=79 Identities=10% Similarity=0.121 Sum_probs=58.4
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCCh
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEP 255 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~ 255 (512)
.|++++||||++|||.++++.+...|++|++++|++++++.+.+ + +.. ..+|.++.
T Consensus 140 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~-~--------------------g~~---~~~~~~~~ 195 (327)
T 1qor_A 140 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALK-A--------------------GAW---QVINYREE 195 (327)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH-H--------------------TCS---EEEETTTS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-c--------------------CCC---EEEECCCc
Confidence 58999999999999999999999999999999999877654322 1 111 23577776
Q ss_pred hhHHHHHHHHHHHcCCCcccccccc
Q 010380 256 ADVQKLSNFAVNEFGSIDIWINNAG 280 (512)
Q Consensus 256 ~sv~~~~~~i~~~~g~IDvLInnAG 280 (512)
+..+.+.+... ..++|++|+|+|
T Consensus 196 ~~~~~~~~~~~--~~~~D~vi~~~g 218 (327)
T 1qor_A 196 DLVERLKEITG--GKKVRVVYDSVG 218 (327)
T ss_dssp CHHHHHHHHTT--TCCEEEEEECSC
T ss_pred cHHHHHHHHhC--CCCceEEEECCc
Confidence 55554443321 136999999998
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=97.98 E-value=6.3e-06 Score=83.42 Aligned_cols=80 Identities=13% Similarity=0.154 Sum_probs=58.7
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCCh
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEP 255 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~ 255 (512)
.+++++||||++|||.++++.+...|++|++++|++++++.+. ++ +.. ..+|.++.
T Consensus 145 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~-~~--------------------g~~---~~~d~~~~ 200 (333)
T 1wly_A 145 PGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETAR-KL--------------------GCH---HTINYSTQ 200 (333)
T ss_dssp TTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHH-HH--------------------TCS---EEEETTTS
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-Hc--------------------CCC---EEEECCCH
Confidence 5789999999999999999999999999999999987765432 22 111 23477766
Q ss_pred hhHHHHHHHHHHHcCCCccccccccc
Q 010380 256 ADVQKLSNFAVNEFGSIDIWINNAGT 281 (512)
Q Consensus 256 ~sv~~~~~~i~~~~g~IDvLInnAG~ 281 (512)
+..+.+.+.. . ..++|++|+|+|.
T Consensus 201 ~~~~~i~~~~-~-~~~~d~vi~~~g~ 224 (333)
T 1wly_A 201 DFAEVVREIT-G-GKGVDVVYDSIGK 224 (333)
T ss_dssp CHHHHHHHHH-T-TCCEEEEEECSCT
T ss_pred HHHHHHHHHh-C-CCCCeEEEECCcH
Confidence 5544443322 1 1369999999984
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.95 E-value=1.1e-05 Score=85.93 Aligned_cols=80 Identities=18% Similarity=0.191 Sum_probs=61.1
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHC-CCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEcc
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLS-GDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACD 251 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~-Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~D 251 (512)
.++++++|+|+|+ ||+|+++++.|++. |++|++++|+.++++++.++ ..+..+.+|
T Consensus 19 ~~l~~k~VlIiGA-GgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~----------------------~~~~~~~~D 75 (467)
T 2axq_A 19 GRHMGKNVLLLGS-GFVAQPVIDTLAANDDINVTVACRTLANAQALAKP----------------------SGSKAISLD 75 (467)
T ss_dssp ----CEEEEEECC-STTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGG----------------------GTCEEEECC
T ss_pred cCCCCCEEEEECC-hHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHh----------------------cCCcEEEEe
Confidence 3567889999997 99999999999998 68999999998876544321 124457899
Q ss_pred CCChhhHHHHHHHHHHHcCCCcccccccccC
Q 010380 252 VCEPADVQKLSNFAVNEFGSIDIWINNAGTN 282 (512)
Q Consensus 252 ltd~~sv~~~~~~i~~~~g~IDvLInnAG~~ 282 (512)
++|.+++.++++ .+|+|||+++..
T Consensus 76 ~~d~~~l~~~l~-------~~DvVIn~tp~~ 99 (467)
T 2axq_A 76 VTDDSALDKVLA-------DNDVVISLIPYT 99 (467)
T ss_dssp TTCHHHHHHHHH-------TSSEEEECSCGG
T ss_pred cCCHHHHHHHHc-------CCCEEEECCchh
Confidence 999887776653 689999999864
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=9.6e-06 Score=82.94 Aligned_cols=80 Identities=16% Similarity=0.226 Sum_probs=58.5
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCCh
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEP 255 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~ 255 (512)
.|++++||||++|||.++++.+...|++|++++|++++++.+ +++ +.. ..+|.++.
T Consensus 162 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~-~~~--------------------g~~---~~~~~~~~ 217 (354)
T 2j8z_A 162 AGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMA-EKL--------------------GAA---AGFNYKKE 217 (354)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH-HHH--------------------TCS---EEEETTTS
T ss_pred CCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HHc--------------------CCc---EEEecCCh
Confidence 589999999999999999999999999999999998876544 222 111 23577765
Q ss_pred hhHHHHHHHHHHHcCCCccccccccc
Q 010380 256 ADVQKLSNFAVNEFGSIDIWINNAGT 281 (512)
Q Consensus 256 ~sv~~~~~~i~~~~g~IDvLInnAG~ 281 (512)
+.++.+.+.. . ..++|++|+|+|.
T Consensus 218 ~~~~~~~~~~-~-~~~~d~vi~~~G~ 241 (354)
T 2j8z_A 218 DFSEATLKFT-K-GAGVNLILDCIGG 241 (354)
T ss_dssp CHHHHHHHHT-T-TSCEEEEEESSCG
T ss_pred HHHHHHHHHh-c-CCCceEEEECCCc
Confidence 5444433321 1 1369999999984
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=9e-06 Score=82.28 Aligned_cols=80 Identities=28% Similarity=0.315 Sum_probs=58.5
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCCh
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEP 255 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~ 255 (512)
.|++|+|+||++|||.++++.+...|++|++++|++++++.+.+++ +.. ...|..+.
T Consensus 149 ~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~--------------------g~~---~~~~~~~~ 205 (336)
T 4b7c_A 149 NGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEEL--------------------GFD---GAIDYKNE 205 (336)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTT--------------------CCS---EEEETTTS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc--------------------CCC---EEEECCCH
Confidence 5899999999999999999999999999999999988765443322 221 23466665
Q ss_pred hhHHHHHHHHHHHcCCCccccccccc
Q 010380 256 ADVQKLSNFAVNEFGSIDIWINNAGT 281 (512)
Q Consensus 256 ~sv~~~~~~i~~~~g~IDvLInnAG~ 281 (512)
+..+.+.+ +. .+++|++|+|+|.
T Consensus 206 ~~~~~~~~-~~--~~~~d~vi~~~g~ 228 (336)
T 4b7c_A 206 DLAAGLKR-EC--PKGIDVFFDNVGG 228 (336)
T ss_dssp CHHHHHHH-HC--TTCEEEEEESSCH
T ss_pred HHHHHHHH-hc--CCCceEEEECCCc
Confidence 44433333 22 2479999999984
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=6.9e-06 Score=83.93 Aligned_cols=77 Identities=18% Similarity=0.262 Sum_probs=55.8
Q ss_pred CEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChh
Q 010380 178 RNVVITGSTRGLGKALAREFLLSGD-RVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPA 256 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~ 256 (512)
++++||||++|||.++++.+...|+ +|+++++++++++.+.+++ +.. ..+|.++.+
T Consensus 162 ~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~--------------------g~~---~~~d~~~~~ 218 (357)
T 2zb4_A 162 KTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSEL--------------------GFD---AAINYKKDN 218 (357)
T ss_dssp CEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTS--------------------CCS---EEEETTTSC
T ss_pred cEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHc--------------------CCc---eEEecCchH
Confidence 8999999999999999999999999 9999999987765443221 121 235777644
Q ss_pred hHHHHHHHHHHHcCCCcccccccc
Q 010380 257 DVQKLSNFAVNEFGSIDIWINNAG 280 (512)
Q Consensus 257 sv~~~~~~i~~~~g~IDvLInnAG 280 (512)
..+. +.++.. +++|++|+|+|
T Consensus 219 ~~~~-~~~~~~--~~~d~vi~~~G 239 (357)
T 2zb4_A 219 VAEQ-LRESCP--AGVDVYFDNVG 239 (357)
T ss_dssp HHHH-HHHHCT--TCEEEEEESCC
T ss_pred HHHH-HHHhcC--CCCCEEEECCC
Confidence 3333 222222 26999999998
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=1.4e-05 Score=69.80 Aligned_cols=77 Identities=14% Similarity=0.252 Sum_probs=55.9
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCC
Q 010380 175 AGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCE 254 (512)
Q Consensus 175 l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd 254 (512)
+++++++|+|+ |++|..+++.|.+.|++|++++|++++.+.. .+ .+ ...+.+|.++
T Consensus 4 ~~~~~v~I~G~-G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~----~~-----------------~~--~~~~~~d~~~ 59 (144)
T 2hmt_A 4 IKNKQFAVIGL-GRFGGSIVKELHRMGHEVLAVDINEEKVNAY----AS-----------------YA--THAVIANATE 59 (144)
T ss_dssp --CCSEEEECC-SHHHHHHHHHHHHTTCCCEEEESCHHHHHTT----TT-----------------TC--SEEEECCTTC
T ss_pred CcCCcEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH----HH-----------------hC--CEEEEeCCCC
Confidence 45678999998 9999999999999999999999987654321 11 11 2457789888
Q ss_pred hhhHHHHHHHHHHHcCCCccccccccc
Q 010380 255 PADVQKLSNFAVNEFGSIDIWINNAGT 281 (512)
Q Consensus 255 ~~sv~~~~~~i~~~~g~IDvLInnAG~ 281 (512)
.+.+.++ .....|++|++++.
T Consensus 60 ~~~l~~~------~~~~~d~vi~~~~~ 80 (144)
T 2hmt_A 60 ENELLSL------GIRNFEYVIVAIGA 80 (144)
T ss_dssp HHHHHTT------TGGGCSEEEECCCS
T ss_pred HHHHHhc------CCCCCCEEEECCCC
Confidence 6655432 23468999998874
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=97.87 E-value=1.5e-05 Score=81.53 Aligned_cols=80 Identities=18% Similarity=0.242 Sum_probs=57.6
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCCh
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEP 255 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~ 255 (512)
.|++++||||++|||.++++.+...|++|++++|++++++.+ ++ .+.. ..+|..+.
T Consensus 170 ~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~-~~--------------------~ga~---~~~d~~~~ 225 (351)
T 1yb5_A 170 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIV-LQ--------------------NGAH---EVFNHREV 225 (351)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH-HH--------------------TTCS---EEEETTST
T ss_pred CcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHH-HH--------------------cCCC---EEEeCCCc
Confidence 588999999999999999999999999999999998876532 21 1222 23577765
Q ss_pred hhHHHHHHHHHHHcCCCccccccccc
Q 010380 256 ADVQKLSNFAVNEFGSIDIWINNAGT 281 (512)
Q Consensus 256 ~sv~~~~~~i~~~~g~IDvLInnAG~ 281 (512)
+..+.+.+.. . ..++|++|+|+|.
T Consensus 226 ~~~~~~~~~~-~-~~~~D~vi~~~G~ 249 (351)
T 1yb5_A 226 NYIDKIKKYV-G-EKGIDIIIEMLAN 249 (351)
T ss_dssp THHHHHHHHH-C-TTCEEEEEESCHH
T ss_pred hHHHHHHHHc-C-CCCcEEEEECCCh
Confidence 5444433322 1 1369999999983
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.84 E-value=3.1e-05 Score=68.00 Aligned_cols=75 Identities=17% Similarity=0.357 Sum_probs=57.5
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCCh
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEP 255 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~ 255 (512)
..++++|+|+ |.+|.++|+.|.++|++|++++++++..+.+. + ..+.++.+|.+++
T Consensus 5 ~~~~v~I~G~-G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~----~-------------------~~~~~~~gd~~~~ 60 (141)
T 3llv_A 5 GRYEYIVIGS-EAAGVGLVRELTAAGKKVLAVDKSKEKIELLE----D-------------------EGFDAVIADPTDE 60 (141)
T ss_dssp -CCSEEEECC-SHHHHHHHHHHHHTTCCEEEEESCHHHHHHHH----H-------------------TTCEEEECCTTCH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEECCHHHHHHHH----H-------------------CCCcEEECCCCCH
Confidence 3567999998 77999999999999999999999987765432 2 1245688999998
Q ss_pred hhHHHHHHHHHHHcCCCcccccccc
Q 010380 256 ADVQKLSNFAVNEFGSIDIWINNAG 280 (512)
Q Consensus 256 ~sv~~~~~~i~~~~g~IDvLInnAG 280 (512)
+.++++ .....|++|.+.+
T Consensus 61 ~~l~~~------~~~~~d~vi~~~~ 79 (141)
T 3llv_A 61 SFYRSL------DLEGVSAVLITGS 79 (141)
T ss_dssp HHHHHS------CCTTCSEEEECCS
T ss_pred HHHHhC------CcccCCEEEEecC
Confidence 876653 2246888887765
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=97.77 E-value=2.5e-05 Score=79.46 Aligned_cols=80 Identities=13% Similarity=0.198 Sum_probs=57.2
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHC-CCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCC
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLS-GDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCE 254 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~-Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd 254 (512)
.+++++|||+++|||+.+++.+... |++|+++++++++++.+ +++ +.. ..+|.++
T Consensus 170 ~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~-~~~--------------------g~~---~~~~~~~ 225 (347)
T 1jvb_A 170 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAA-KRA--------------------GAD---YVINASM 225 (347)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHH-HHH--------------------TCS---EEEETTT
T ss_pred CCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH-HHh--------------------CCC---EEecCCC
Confidence 5789999999999999999999998 99999999998776543 222 111 2246666
Q ss_pred hhhHHHHHHHHHHHcCCCccccccccc
Q 010380 255 PADVQKLSNFAVNEFGSIDIWINNAGT 281 (512)
Q Consensus 255 ~~sv~~~~~~i~~~~g~IDvLInnAG~ 281 (512)
.+..+.+. ++... +++|++|+|+|.
T Consensus 226 ~~~~~~~~-~~~~~-~~~d~vi~~~g~ 250 (347)
T 1jvb_A 226 QDPLAEIR-RITES-KGVDAVIDLNNS 250 (347)
T ss_dssp SCHHHHHH-HHTTT-SCEEEEEESCCC
T ss_pred ccHHHHHH-HHhcC-CCceEEEECCCC
Confidence 54433322 22211 589999999985
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=97.74 E-value=5.2e-05 Score=75.48 Aligned_cols=51 Identities=22% Similarity=0.307 Sum_probs=45.7
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcChhhHHHHHHHHHHH
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRSSESVRMTVTELEEN 224 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~~~l~~~~~el~~~ 224 (512)
.++++|+++|+|+ ||+|++++..|++.|+ +|++++|+.++++++.+++...
T Consensus 123 ~~l~~k~vlVlGa-GG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~ 174 (283)
T 3jyo_A 123 PNAKLDSVVQVGA-GGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNA 174 (283)
T ss_dssp TTCCCSEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHH
T ss_pred cCcCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhh
Confidence 3678999999998 8999999999999998 7999999999998888887653
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.71 E-value=5.2e-05 Score=77.43 Aligned_cols=79 Identities=19% Similarity=0.195 Sum_probs=58.2
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCCh
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEP 255 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~ 255 (512)
.|++|+|+||++|||.++++.+...|++|+++++++++++.+. ++ +.. ...|..+.
T Consensus 167 ~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~-~l--------------------Ga~---~~~~~~~~ 222 (353)
T 4dup_A 167 EGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACE-RL--------------------GAK---RGINYRSE 222 (353)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH-HH--------------------TCS---EEEETTTS
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-hc--------------------CCC---EEEeCCch
Confidence 5889999999999999999999999999999999988775432 22 111 12466665
Q ss_pred hhHHHHHHHHHHHcCCCccccccccc
Q 010380 256 ADVQKLSNFAVNEFGSIDIWINNAGT 281 (512)
Q Consensus 256 ~sv~~~~~~i~~~~g~IDvLInnAG~ 281 (512)
+..+.+.+ +. .+++|++|+|+|.
T Consensus 223 ~~~~~~~~-~~--~~g~Dvvid~~g~ 245 (353)
T 4dup_A 223 DFAAVIKA-ET--GQGVDIILDMIGA 245 (353)
T ss_dssp CHHHHHHH-HH--SSCEEEEEESCCG
T ss_pred HHHHHHHH-Hh--CCCceEEEECCCH
Confidence 44443333 22 4579999999984
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=97.66 E-value=5.2e-05 Score=76.97 Aligned_cols=152 Identities=9% Similarity=0.096 Sum_probs=96.8
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-------EEEEEEcC----hhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceE
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSGD-------RVVVASRS----SESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKV 245 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~Ga-------~Vvl~~R~----~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v 245 (512)
..+|+||||+|.+|..++..|+.+|. +|++++++ +++++....++.+. ...+
T Consensus 5 ~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~-----------------~~~~ 67 (329)
T 1b8p_A 5 PMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDC-----------------AFPL 67 (329)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTT-----------------TCTT
T ss_pred CCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhh-----------------cccc
Confidence 45799999999999999999999885 79999998 55555444444331 0011
Q ss_pred EEEEccCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCC
Q 010380 246 AGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGG 325 (512)
Q Consensus 246 ~~v~~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g 325 (512)
..|+....+..+. +...|++|+.||... . ...+. ...+..|+.....+.+.+..+- +..+
T Consensus 68 ---~~~i~~~~~~~~a-------l~~aD~Vi~~ag~~~--~--~g~~r---~dl~~~N~~i~~~i~~~i~~~~---~p~a 127 (329)
T 1b8p_A 68 ---LAGMTAHADPMTA-------FKDADVALLVGARPR--G--PGMER---KDLLEANAQIFTVQGKAIDAVA---SRNI 127 (329)
T ss_dssp ---EEEEEEESSHHHH-------TTTCSEEEECCCCCC--C--TTCCH---HHHHHHHHHHHHHHHHHHHHHS---CTTC
T ss_pred ---cCcEEEecCcHHH-------hCCCCEEEEeCCCCC--C--CCCCH---HHHHHHHHHHHHHHHHHHHHhc---CCCe
Confidence 1244433333333 336899999999754 1 12233 3467888887777776665542 1356
Q ss_pred eEEeecCCC-------CCCC-CCCCcchhhHHHHHHHHHHHHHHHHhC
Q 010380 326 HIFNMDGAG-------SGGS-STPLTAVYGSTKCGLRQLQASLFKESK 365 (512)
Q Consensus 326 ~IV~vSS~~-------a~~~-~~p~~~~Y~aSKaAl~~l~~sLa~El~ 365 (512)
+||++|... .... +.|..-.|+.++.--..+...++..+.
T Consensus 128 ~ii~~SNPv~~~t~~~~~~~~~~p~~~v~g~t~Ld~~r~~~~la~~lg 175 (329)
T 1b8p_A 128 KVLVVGNPANTNAYIAMKSAPSLPAKNFTAMLRLDHNRALSQIAAKTG 175 (329)
T ss_dssp EEEECSSSHHHHHHHHHHTCTTSCGGGEEECCHHHHHHHHHHHHHHHT
T ss_pred EEEEccCchHHHHHHHHHHcCCCCHHHEEEeecHHHHHHHHHHHHHhC
Confidence 899987632 0111 334444588877766677777887774
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00021 Score=72.04 Aligned_cols=84 Identities=18% Similarity=0.257 Sum_probs=60.7
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcC---hhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEE
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRS---SESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGI 248 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~---~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v 248 (512)
.++++|+++|+|+ ||.|++++..|++.|+ +|+++.|+ .++++++.+++... .+..+.
T Consensus 144 ~~l~gk~~lVlGA-GGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~----------------~~~~v~-- 204 (312)
T 3t4e_A 144 FDMRGKTMVLLGA-GGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNEN----------------TDCVVT-- 204 (312)
T ss_dssp CCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHH----------------SSCEEE--
T ss_pred CCcCCCEEEEECc-CHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhc----------------cCcceE--
Confidence 5688999999997 8999999999999998 89999999 77787777776542 122332
Q ss_pred EccCCChhhHHHHHHHHHHHcCCCcccccccccC
Q 010380 249 ACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTN 282 (512)
Q Consensus 249 ~~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~ 282 (512)
..+..+.+...+.+ ...|+|||+....
T Consensus 205 ~~~~~~l~~~~~~l-------~~~DiIINaTp~G 231 (312)
T 3t4e_A 205 VTDLADQHAFTEAL-------ASADILTNGTKVG 231 (312)
T ss_dssp EEETTCHHHHHHHH-------HHCSEEEECSSTT
T ss_pred EechHhhhhhHhhc-------cCceEEEECCcCC
Confidence 33554433222222 2479999987664
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00018 Score=71.01 Aligned_cols=48 Identities=19% Similarity=0.278 Sum_probs=42.8
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHH
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTEL 221 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el 221 (512)
.++++|+++|+|+ ||+|++++..|++.|++|++++|+.++++++.+++
T Consensus 115 ~~~~~~~vlvlGa-Gg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~~ 162 (272)
T 1p77_A 115 WLRPNQHVLILGA-GGATKGVLLPLLQAQQNIVLANRTFSKTKELAERF 162 (272)
T ss_dssp CCCTTCEEEEECC-SHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHH
T ss_pred CCcCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc
Confidence 3578899999998 89999999999999999999999998887776655
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.57 E-value=7.5e-05 Score=75.79 Aligned_cols=79 Identities=18% Similarity=0.199 Sum_probs=56.6
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCCh
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEP 255 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~ 255 (512)
.+++++|+|+++|+|..+++.+...|++|++++|++++++.+. ++ +.. ..+|.++.
T Consensus 166 ~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~-~~--------------------ga~---~~~d~~~~ 221 (343)
T 2eih_A 166 PGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAK-AL--------------------GAD---ETVNYTHP 221 (343)
T ss_dssp TTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHH-HH--------------------TCS---EEEETTST
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-hc--------------------CCC---EEEcCCcc
Confidence 5789999999999999999999999999999999988765442 21 122 12577765
Q ss_pred hhHHHHHHHHHHHcCCCcccccccc
Q 010380 256 ADVQKLSNFAVNEFGSIDIWINNAG 280 (512)
Q Consensus 256 ~sv~~~~~~i~~~~g~IDvLInnAG 280 (512)
+-.+. +.++.. ..++|++|+|+|
T Consensus 222 ~~~~~-~~~~~~-~~~~d~vi~~~g 244 (343)
T 2eih_A 222 DWPKE-VRRLTG-GKGADKVVDHTG 244 (343)
T ss_dssp THHHH-HHHHTT-TTCEEEEEESSC
T ss_pred cHHHH-HHHHhC-CCCceEEEECCC
Confidence 42222 222211 137999999999
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00014 Score=76.71 Aligned_cols=85 Identities=20% Similarity=0.194 Sum_probs=59.4
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEE--ccCC
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIA--CDVC 253 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~--~Dlt 253 (512)
.|++|+|+||+||||..+++.+...|++|+++++++++++.+ +++ +....+.. .|+.
T Consensus 220 ~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~~~~-~~l--------------------Ga~~~i~~~~~~~~ 278 (447)
T 4a0s_A 220 QGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAV-RAL--------------------GCDLVINRAELGIT 278 (447)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH-HHT--------------------TCCCEEEHHHHTCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-Hhc--------------------CCCEEEeccccccc
Confidence 589999999999999999999999999999999988876543 221 22221111 1221
Q ss_pred ---------ChhhHHHHHHHHHHHcC-CCccccccccc
Q 010380 254 ---------EPADVQKLSNFAVNEFG-SIDIWINNAGT 281 (512)
Q Consensus 254 ---------d~~sv~~~~~~i~~~~g-~IDvLInnAG~ 281 (512)
+.++++.+.+.+.+..+ .+|++|+|+|.
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~v~~~~g~g~Dvvid~~G~ 316 (447)
T 4a0s_A 279 DDIADDPRRVVETGRKLAKLVVEKAGREPDIVFEHTGR 316 (447)
T ss_dssp TTGGGCHHHHHHHHHHHHHHHHHHHSSCCSEEEECSCH
T ss_pred ccccccccccchhhhHHHHHHHHHhCCCceEEEECCCc
Confidence 12344555666665554 69999999984
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=6.8e-05 Score=75.55 Aligned_cols=80 Identities=11% Similarity=0.116 Sum_probs=57.1
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCCh
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEP 255 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~ 255 (512)
.|++++|+||+||+|..+++.+...|++|+++++++++++.+. ++ +.. ...|.++.
T Consensus 140 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~-~~--------------------Ga~---~~~~~~~~ 195 (325)
T 3jyn_A 140 PGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAK-AL--------------------GAW---ETIDYSHE 195 (325)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHH-HH--------------------TCS---EEEETTTS
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-Hc--------------------CCC---EEEeCCCc
Confidence 5899999999999999999999999999999999988775432 22 111 22466655
Q ss_pred hhHHHHHHHHHHHcCCCccccccccc
Q 010380 256 ADVQKLSNFAVNEFGSIDIWINNAGT 281 (512)
Q Consensus 256 ~sv~~~~~~i~~~~g~IDvLInnAG~ 281 (512)
+..+.+.+.. ....+|++|+|+|.
T Consensus 196 ~~~~~~~~~~--~~~g~Dvvid~~g~ 219 (325)
T 3jyn_A 196 DVAKRVLELT--DGKKCPVVYDGVGQ 219 (325)
T ss_dssp CHHHHHHHHT--TTCCEEEEEESSCG
T ss_pred cHHHHHHHHh--CCCCceEEEECCCh
Confidence 4433333221 11369999999985
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=7.2e-05 Score=75.58 Aligned_cols=80 Identities=15% Similarity=0.300 Sum_probs=56.6
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCCh
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEP 255 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~ 255 (512)
.|++++|+||++|||.++++.+...|++|+++++++++++.+ +++ +.. ...|..+.
T Consensus 148 ~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~-~~~--------------------ga~---~~~~~~~~ 203 (334)
T 3qwb_A 148 KGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIA-KEY--------------------GAE---YLINASKE 203 (334)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHH-HHT--------------------TCS---EEEETTTS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HHc--------------------CCc---EEEeCCCc
Confidence 589999999999999999999999999999999998876532 221 222 22465554
Q ss_pred hhHHHHHHHHHHHcCCCccccccccc
Q 010380 256 ADVQKLSNFAVNEFGSIDIWINNAGT 281 (512)
Q Consensus 256 ~sv~~~~~~i~~~~g~IDvLInnAG~ 281 (512)
+..+.+.+.. . ..++|++|+|+|.
T Consensus 204 ~~~~~~~~~~-~-~~g~D~vid~~g~ 227 (334)
T 3qwb_A 204 DILRQVLKFT-N-GKGVDASFDSVGK 227 (334)
T ss_dssp CHHHHHHHHT-T-TSCEEEEEECCGG
T ss_pred hHHHHHHHHh-C-CCCceEEEECCCh
Confidence 4333332221 1 1369999999984
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=97.47 E-value=8.7e-05 Score=75.23 Aligned_cols=80 Identities=13% Similarity=0.136 Sum_probs=56.8
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCCh
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEP 255 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~ 255 (512)
.|++|+|+||++|||..+++.+...|++|+++++++++++.+.+ + +.. ...|..+.
T Consensus 144 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~-l--------------------ga~---~~~~~~~~ 199 (340)
T 3gms_A 144 RNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLR-L--------------------GAA---YVIDTSTA 199 (340)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH-H--------------------TCS---EEEETTTS
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh-C--------------------CCc---EEEeCCcc
Confidence 58899999999999999999999999999999999888754432 2 122 12366554
Q ss_pred hhHHHHHHHHHHHcCCCccccccccc
Q 010380 256 ADVQKLSNFAVNEFGSIDIWINNAGT 281 (512)
Q Consensus 256 ~sv~~~~~~i~~~~g~IDvLInnAG~ 281 (512)
+..+.+.+ .. ....+|++|+|+|.
T Consensus 200 ~~~~~~~~-~~-~~~g~Dvvid~~g~ 223 (340)
T 3gms_A 200 PLYETVME-LT-NGIGADAAIDSIGG 223 (340)
T ss_dssp CHHHHHHH-HT-TTSCEEEEEESSCH
T ss_pred cHHHHHHH-Hh-CCCCCcEEEECCCC
Confidence 43333322 21 11369999999985
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00037 Score=70.79 Aligned_cols=80 Identities=18% Similarity=0.208 Sum_probs=56.2
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCCh
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEP 255 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~ 255 (512)
.+++++|+||++|||...++.+...|++|+++++++++++.+. ++ +.. ...|..+.
T Consensus 164 g~~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~-~~--------------------Ga~---~~~~~~~~ 219 (349)
T 3pi7_A 164 GEKAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIALLK-DI--------------------GAA---HVLNEKAP 219 (349)
T ss_dssp CCSEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGGGHHHHH-HH--------------------TCS---EEEETTST
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-Hc--------------------CCC---EEEECCcH
Confidence 3489999999999999999999999999999999988875442 22 221 12355554
Q ss_pred hhHHHHHHHHHHHcCCCccccccccc
Q 010380 256 ADVQKLSNFAVNEFGSIDIWINNAGT 281 (512)
Q Consensus 256 ~sv~~~~~~i~~~~g~IDvLInnAG~ 281 (512)
+-.+.+.+ +... .++|++|+|+|.
T Consensus 220 ~~~~~v~~-~~~~-~g~D~vid~~g~ 243 (349)
T 3pi7_A 220 DFEATLRE-VMKA-EQPRIFLDAVTG 243 (349)
T ss_dssp THHHHHHH-HHHH-HCCCEEEESSCH
T ss_pred HHHHHHHH-HhcC-CCCcEEEECCCC
Confidence 43333332 2221 269999999984
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00091 Score=57.71 Aligned_cols=75 Identities=17% Similarity=0.297 Sum_probs=54.0
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChh
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPA 256 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~ 256 (512)
+++++|+|+ |.+|..+++.|.+.|++|++++|+++..+...++ . .+.++..|.++.+
T Consensus 4 ~m~i~IiG~-G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~--------------------~--~~~~~~~d~~~~~ 60 (140)
T 1lss_A 4 GMYIIIAGI-GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAE--------------------I--DALVINGDCTKIK 60 (140)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH--------------------C--SSEEEESCTTSHH
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHh--------------------c--CcEEEEcCCCCHH
Confidence 357899987 9999999999999999999999998765433211 1 2345678888776
Q ss_pred hHHHHHHHHHHHcCCCcccccccc
Q 010380 257 DVQKLSNFAVNEFGSIDIWINNAG 280 (512)
Q Consensus 257 sv~~~~~~i~~~~g~IDvLInnAG 280 (512)
.+.+. .....|++|.+.+
T Consensus 61 ~l~~~------~~~~~d~vi~~~~ 78 (140)
T 1lss_A 61 TLEDA------GIEDADMYIAVTG 78 (140)
T ss_dssp HHHHT------TTTTCSEEEECCS
T ss_pred HHHHc------CcccCCEEEEeeC
Confidence 54321 1346899998864
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00026 Score=71.89 Aligned_cols=41 Identities=17% Similarity=0.315 Sum_probs=37.8
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHH
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRM 216 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~ 216 (512)
.|++|+|+||+||||..+++.+...|++|+++++++++++.
T Consensus 159 ~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~ 199 (342)
T 4eye_A 159 AGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEF 199 (342)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 58999999999999999999999999999999999888753
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00054 Score=61.02 Aligned_cols=78 Identities=13% Similarity=0.132 Sum_probs=55.9
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcCh-hhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCC
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSS-ESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCE 254 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~-~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd 254 (512)
..++++|.|+ |.+|..+++.|.+.|++|+++++++ ++.+...+.. ...+.++..|.+|
T Consensus 2 ~~~~vlI~G~-G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~--------------------~~~~~~i~gd~~~ 60 (153)
T 1id1_A 2 RKDHFIVCGH-SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRL--------------------GDNADVIPGDSND 60 (153)
T ss_dssp CCSCEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHH--------------------CTTCEEEESCTTS
T ss_pred CCCcEEEECC-CHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhh--------------------cCCCeEEEcCCCC
Confidence 3567888886 9999999999999999999999984 4443332221 1236678899999
Q ss_pred hhhHHHHHHHHHHHcCCCcccccccc
Q 010380 255 PADVQKLSNFAVNEFGSIDIWINNAG 280 (512)
Q Consensus 255 ~~sv~~~~~~i~~~~g~IDvLInnAG 280 (512)
++.++++ .....|.+|.+.+
T Consensus 61 ~~~l~~a------~i~~ad~vi~~~~ 80 (153)
T 1id1_A 61 SSVLKKA------GIDRCRAILALSD 80 (153)
T ss_dssp HHHHHHH------TTTTCSEEEECSS
T ss_pred HHHHHHc------ChhhCCEEEEecC
Confidence 8865543 1236788877664
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00054 Score=72.39 Aligned_cols=85 Identities=21% Similarity=0.271 Sum_probs=61.3
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEE--Ecc--
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGI--ACD-- 251 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v--~~D-- 251 (512)
.|++|+|+||+|++|...++.+...|++|+++++++++++.+ +++ |....+- ..|
T Consensus 228 ~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~~~~~~~-~~l--------------------Ga~~vi~~~~~d~~ 286 (456)
T 3krt_A 228 QGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKAEIC-RAM--------------------GAEAIIDRNAEGYR 286 (456)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH-HHH--------------------TCCEEEETTTTTCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCHHHHHHH-Hhh--------------------CCcEEEecCcCccc
Confidence 588999999999999999999999999999999988876543 222 1111111 111
Q ss_pred ------CCChhhHHHHHHHHHHHcC--CCccccccccc
Q 010380 252 ------VCEPADVQKLSNFAVNEFG--SIDIWINNAGT 281 (512)
Q Consensus 252 ------ltd~~sv~~~~~~i~~~~g--~IDvLInnAG~ 281 (512)
.++.++++++.+.+.+..+ .+|++|+++|.
T Consensus 287 ~~~~~~~~~~~~~~~~~~~i~~~t~g~g~Dvvid~~G~ 324 (456)
T 3krt_A 287 FWKDENTQDPKEWKRFGKRIRELTGGEDIDIVFEHPGR 324 (456)
T ss_dssp SEEETTEECHHHHHHHHHHHHHHHTSCCEEEEEECSCH
T ss_pred ccccccccchHHHHHHHHHHHHHhCCCCCcEEEEcCCc
Confidence 2455666777777776553 79999999984
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0006 Score=69.97 Aligned_cols=45 Identities=24% Similarity=0.250 Sum_probs=39.9
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHH
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVT 219 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~ 219 (512)
.+++++|+|+|+ ||+|+++++.+...|++|++++|++++++.+.+
T Consensus 164 ~l~~~~VlViGa-GgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~ 208 (361)
T 1pjc_A 164 GVKPGKVVILGG-GVVGTEAAKMAVGLGAQVQIFDINVERLSYLET 208 (361)
T ss_dssp TBCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH
Confidence 467799999999 999999999999999999999999988765543
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00035 Score=71.52 Aligned_cols=41 Identities=22% Similarity=0.255 Sum_probs=36.5
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcCh---hhHH
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSS---ESVR 215 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~---~~l~ 215 (512)
+++|++|+|+|+ ||+|..+++.+...|++|+++++++ ++++
T Consensus 178 ~~~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~ 221 (366)
T 2cdc_A 178 TLNCRKVLVVGT-GPIGVLFTLLFRTYGLEVWMANRREPTEVEQT 221 (366)
T ss_dssp SSTTCEEEEESC-HHHHHHHHHHHHHHTCEEEEEESSCCCHHHHH
T ss_pred cCCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCccchHHHH
Confidence 345999999999 9999999999999999999999987 6653
|
| >1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo sapiens} SCOP: c.72.3.1 | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00034 Score=70.39 Aligned_cols=111 Identities=17% Similarity=0.210 Sum_probs=64.2
Q ss_pred CCCCE-EEEECCCC-----------------h-HHHHHHHHHHHCCCEEEEEEcChhhHHHHHH-----HHHHHHhhhhh
Q 010380 175 AGPRN-VVITGSTR-----------------G-LGKALAREFLLSGDRVVVASRSSESVRMTVT-----ELEENLKEGMM 230 (512)
Q Consensus 175 l~gk~-vLVTGass-----------------G-IG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~-----el~~~~~~~~~ 230 (512)
+.||. ||||+|.. | .|.++|+.++++|+.|+++.+... +..... .+.+.+..
T Consensus 34 l~gk~~VLITaGgT~EpID~DpVRfItN~SSGkmG~aiAe~~~~~Ga~V~lv~g~~s-l~p~~r~~~~~~~~~~~~~--- 109 (313)
T 1p9o_A 34 AQGRRVVLVTSGGTKVPLEARPVRFLDNFSSGRRGATSAEAFLAAGYGVLFLYRARS-AFPYAHRFPPQTWLSALRP--- 109 (313)
T ss_dssp HTTCCEEEEEESBCEEESSSSCSEEEEECCCCHHHHHHHHHHHHTTCEEEEEEETTS-CCTTGGGSCHHHHHHHCEE---
T ss_pred hcCCeEEEEeCCCcccccCCCceeEecCCCCcHHHHHHHHHHHHCCCEEEEEecCCC-cCcchhccCccchhhhhcc---
Confidence 46777 99998865 6 999999999999999999988532 110000 00000000
Q ss_pred hcCCCCcccccCceEEEEEccCCChhhHHHHHHHH------------------------------HHHcCCCcccccccc
Q 010380 231 AAGGSSKKNLVHAKVAGIACDVCEPADVQKLSNFA------------------------------VNEFGSIDIWINNAG 280 (512)
Q Consensus 231 ~~g~~~~~~~~g~~v~~v~~Dltd~~sv~~~~~~i------------------------------~~~~g~IDvLInnAG 280 (512)
....+..+..+..|+...+++.+.+... .+.++..|++|.+|+
T Consensus 110 -------~~~~~~~~~~i~v~v~sa~~m~~av~~~~~~~~~~~l~~i~f~tv~eyl~~L~~~~~~l~~~~~~di~i~aAA 182 (313)
T 1p9o_A 110 -------SGPALSGLLSLEAEENALPGFAEALRSYQEAAAAGTFLVVEFTTLADYLHLLQAAAQALNPLGPSAMFYLAAA 182 (313)
T ss_dssp -------CCC-CCSEEEEEEETTTSTTHHHHHHHHHHHHHHTCEEEEEECBHHHHHHHHHHHHHHHGGGGGGEEEEECSB
T ss_pred -------ccccccccceeeeccccHHHHHHHHHHHhhhhccccceeeccccHHHHHHHHHHhhHHhhccCCCCEEEECCc
Confidence 0001123445777888777777766543 244678999999999
Q ss_pred cCCCCCC-CcCCCHHHHH
Q 010380 281 TNKGFKP-LLQFTNEEIE 297 (512)
Q Consensus 281 ~~~~~~~-~~~~s~e~~~ 297 (512)
+.+ +.+ ..+...+.++
T Consensus 183 VsD-f~~p~~~~~~~KIk 199 (313)
T 1p9o_A 183 VSD-FYVPVSEMPEHKIE 199 (313)
T ss_dssp CCS-EECC----------
T ss_pred hhh-ccCCcccccccccc
Confidence 987 443 2344433343
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00033 Score=70.03 Aligned_cols=47 Identities=19% Similarity=0.324 Sum_probs=41.1
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcChhhHHHHHHH
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRSSESVRMTVTE 220 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~~~l~~~~~e 220 (512)
.++.+|+++|+|+ ||+|++++..|++.|+ +|++++|+.++++++.++
T Consensus 137 ~~l~~~~vlVlGa-Gg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~ 184 (297)
T 2egg_A 137 ITLDGKRILVIGA-GGGARGIYFSLLSTAAERIDMANRTVEKAERLVRE 184 (297)
T ss_dssp CCCTTCEEEEECC-SHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHH
T ss_pred CCCCCCEEEEECc-HHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHH
Confidence 3578999999998 7999999999999998 999999999887766554
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0026 Score=64.35 Aligned_cols=114 Identities=15% Similarity=0.164 Sum_probs=70.3
Q ss_pred CEEEEECCCChHHHHHHHHHHHCC--CEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCCh
Q 010380 178 RNVVITGSTRGLGKALAREFLLSG--DRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEP 255 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~G--a~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~ 255 (512)
.+|+||||+|.+|..++..|+++| .+|++++++++ +....++.+.. ...++.. +++.
T Consensus 9 mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~--~~~~~dL~~~~---------------~~~~v~~----~~~t 67 (326)
T 1smk_A 9 FKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNA--PGVTADISHMD---------------TGAVVRG----FLGQ 67 (326)
T ss_dssp EEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSH--HHHHHHHHTSC---------------SSCEEEE----EESH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCc--HhHHHHhhccc---------------ccceEEE----EeCC
Confidence 469999999999999999999999 78999998876 22223332200 0112222 2222
Q ss_pred hhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEee
Q 010380 256 ADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNM 330 (512)
Q Consensus 256 ~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~v 330 (512)
++..+. +...|++|++||.... + ..+.+ ..+..|+.+...+.+.+...- ..+.|+++
T Consensus 68 ~d~~~a-------l~gaDvVi~~ag~~~~--~--g~~r~---dl~~~N~~~~~~i~~~i~~~~----p~~~viv~ 124 (326)
T 1smk_A 68 QQLEAA-------LTGMDLIIVPAGVPRK--P--GMTRD---DLFKINAGIVKTLCEGIAKCC----PRAIVNLI 124 (326)
T ss_dssp HHHHHH-------HTTCSEEEECCCCCCC--S--SCCCS---HHHHHHHHHHHHHHHHHHHHC----TTSEEEEC
T ss_pred CCHHHH-------cCCCCEEEEcCCcCCC--C--CCCHH---HHHHHHHHHHHHHHHHHHhhC----CCeEEEEE
Confidence 333332 2368999999997541 1 12222 347788888777777665542 23455554
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00048 Score=69.75 Aligned_cols=77 Identities=21% Similarity=0.214 Sum_probs=55.5
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCCh
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEP 255 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~ 255 (512)
.|++++|+|+ +|+|..+++.+...|++|++++|++++++.+. + .+.. ..+|.++.
T Consensus 164 ~g~~VlV~Ga-G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~-~--------------------lGa~---~~~d~~~~ 218 (339)
T 1rjw_A 164 PGEWVAIYGI-GGLGHVAVQYAKAMGLNVVAVDIGDEKLELAK-E--------------------LGAD---LVVNPLKE 218 (339)
T ss_dssp TTCEEEEECC-STTHHHHHHHHHHTTCEEEEECSCHHHHHHHH-H--------------------TTCS---EEECTTTS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-H--------------------CCCC---EEecCCCc
Confidence 5789999999 88999999999999999999999988765432 1 1222 22477654
Q ss_pred hhHHHHHHHHHHHcCCCccccccccc
Q 010380 256 ADVQKLSNFAVNEFGSIDIWINNAGT 281 (512)
Q Consensus 256 ~sv~~~~~~i~~~~g~IDvLInnAG~ 281 (512)
+ +.+.+.++. +.+|++|+++|.
T Consensus 219 ~-~~~~~~~~~---~~~d~vid~~g~ 240 (339)
T 1rjw_A 219 D-AAKFMKEKV---GGVHAAVVTAVS 240 (339)
T ss_dssp C-HHHHHHHHH---SSEEEEEESSCC
T ss_pred c-HHHHHHHHh---CCCCEEEECCCC
Confidence 3 333232222 689999999984
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00037 Score=71.30 Aligned_cols=41 Identities=17% Similarity=0.177 Sum_probs=37.3
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHH
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRM 216 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~ 216 (512)
.|++++|+||+||+|..+++.+...|++|+++++++++++.
T Consensus 163 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~ 203 (362)
T 2c0c_A 163 EGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAF 203 (362)
T ss_dssp TTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHH
Confidence 58899999999999999999999999999999999877654
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0042 Score=62.39 Aligned_cols=151 Identities=15% Similarity=0.128 Sum_probs=88.8
Q ss_pred EEEEECCCChHHHHHHHHHHHCCC--EEEEEEc--ChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCC
Q 010380 179 NVVITGSTRGLGKALAREFLLSGD--RVVVASR--SSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCE 254 (512)
Q Consensus 179 ~vLVTGassGIG~aiA~~La~~Ga--~Vvl~~R--~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd 254 (512)
+|+||||+|.+|..++..|+.+|. .++++++ ++++++....++.+.... .+..+.+...| |
T Consensus 2 KI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~-------------~~~~~~i~~~~--d 66 (313)
T 1hye_A 2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAG-------------TRSDANIYVES--D 66 (313)
T ss_dssp EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTT-------------SCCCCEEEEEE--T
T ss_pred EEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhHHh-------------cCCCeEEEeCC--c
Confidence 589999999999999999999884 6899998 766565545555432110 11122222111 1
Q ss_pred hhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCC
Q 010380 255 PADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAG 334 (512)
Q Consensus 255 ~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~ 334 (512)
++. +.+...|++|+.||... .+ ..+. ...+..|+.+...+.+.+..+ . .+.|+++|...
T Consensus 67 --~l~-------~al~gaD~Vi~~Ag~~~--~~--g~~r---~dl~~~N~~i~~~i~~~i~~~----~-~~~vlv~SNPv 125 (313)
T 1hye_A 67 --ENL-------RIIDESDVVIITSGVPR--KE--GMSR---MDLAKTNAKIVGKYAKKIAEI----C-DTKIFVITNPV 125 (313)
T ss_dssp --TCG-------GGGTTCSEEEECCSCCC--CT--TCCH---HHHHHHHHHHHHHHHHHHHHH----C-CCEEEECSSSH
T ss_pred --chH-------HHhCCCCEEEECCCCCC--CC--CCcH---HHHHHHHHHHHHHHHHHHHHh----C-CeEEEEecCcH
Confidence 111 12346899999999754 11 2233 345888988887777776554 2 34555554421
Q ss_pred C-------CCCCCCCcchhhH-HHHHHHHHHHHHHHHhC
Q 010380 335 S-------GGSSTPLTAVYGS-TKCGLRQLQASLFKESK 365 (512)
Q Consensus 335 a-------~~~~~p~~~~Y~a-SKaAl~~l~~sLa~El~ 365 (512)
. ...+.|..-.++. +..-...+...++..+.
T Consensus 126 ~~~t~~~~k~~~~p~~rviG~gt~LD~~r~~~~la~~lg 164 (313)
T 1hye_A 126 DVMTYKALVDSKFERNQVFGLGTHLDSLRFKVAIAKFFG 164 (313)
T ss_dssp HHHHHHHHHHHCCCTTSEEECTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhCcChhcEEEeCccHHHHHHHHHHHHHhC
Confidence 0 0112344445555 55555566666776664
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00089 Score=67.93 Aligned_cols=42 Identities=19% Similarity=0.313 Sum_probs=37.9
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHH
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMT 217 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~ 217 (512)
.|++|+|+||+|++|...++.+...|++|+++++++++++.+
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~ 191 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWT 191 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHH
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 589999999999999999999999999999999998876543
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00097 Score=68.86 Aligned_cols=79 Identities=18% Similarity=0.174 Sum_probs=58.0
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
..+.+++++|+|+ |+||+++++.+...|++|++.+|++++++.+.+.+ +..+ .+|.
T Consensus 164 ~~l~g~~V~ViG~-G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~--------------------g~~~---~~~~ 219 (377)
T 2vhw_A 164 PGVEPADVVVIGA-GTAGYNAARIANGMGATVTVLDINIDKLRQLDAEF--------------------CGRI---HTRY 219 (377)
T ss_dssp TTBCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT--------------------TTSS---EEEE
T ss_pred CCCCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhc--------------------CCee---Eecc
Confidence 3578999999998 99999999999999999999999988765543221 1221 2344
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTN 282 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~ 282 (512)
.+.+++.+++. ..|++|++++..
T Consensus 220 ~~~~~l~~~l~-------~aDvVi~~~~~p 242 (377)
T 2vhw_A 220 SSAYELEGAVK-------RADLVIGAVLVP 242 (377)
T ss_dssp CCHHHHHHHHH-------HCSEEEECCCCT
T ss_pred CCHHHHHHHHc-------CCCEEEECCCcC
Confidence 45555544432 589999999864
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00049 Score=68.37 Aligned_cols=42 Identities=21% Similarity=0.290 Sum_probs=37.9
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHH
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMT 217 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~ 217 (512)
.|++++|+|++||+|..+++.+...|++|+++++++++++.+
T Consensus 125 ~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~ 166 (302)
T 1iz0_A 125 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALP 166 (302)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 588999999999999999999999999999999998876543
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0013 Score=66.75 Aligned_cols=39 Identities=23% Similarity=0.387 Sum_probs=35.1
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHH
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVR 215 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~ 215 (512)
.|++|+|+||+|++|..+++.+...|++|+++ +++++++
T Consensus 150 ~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~ 188 (343)
T 3gaz_A 150 DGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDLE 188 (343)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHHH
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHHH
Confidence 58899999999999999999999999999998 7777654
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0014 Score=67.22 Aligned_cols=76 Identities=13% Similarity=0.181 Sum_probs=56.4
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
+.-+...|+|.|| |++|+.+|+.|++ .++|.+++|+.++++.+. ..+..+.+|+
T Consensus 12 ~~g~~mkilvlGa-G~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~------------------------~~~~~~~~d~ 65 (365)
T 3abi_A 12 IEGRHMKVLILGA-GNIGRAIAWDLKD-EFDVYIGDVNNENLEKVK------------------------EFATPLKVDA 65 (365)
T ss_dssp ----CCEEEEECC-SHHHHHHHHHHTT-TSEEEEEESCHHHHHHHT------------------------TTSEEEECCT
T ss_pred ccCCccEEEEECC-CHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHh------------------------ccCCcEEEec
Confidence 3334446899998 9999999999875 579999999987765431 1234578999
Q ss_pred CChhhHHHHHHHHHHHcCCCccccccccc
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGT 281 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~ 281 (512)
+|.+++.++++ ..|+|||+++.
T Consensus 66 ~d~~~l~~~~~-------~~DvVi~~~p~ 87 (365)
T 3abi_A 66 SNFDKLVEVMK-------EFELVIGALPG 87 (365)
T ss_dssp TCHHHHHHHHT-------TCSEEEECCCG
T ss_pred CCHHHHHHHHh-------CCCEEEEecCC
Confidence 99988777654 57999999875
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0013 Score=58.64 Aligned_cols=78 Identities=19% Similarity=0.193 Sum_probs=54.8
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
+..+++++|.|+ |.+|..+++.|.+.|++|++++|++++++.+.+ ...+..+..|.+
T Consensus 16 ~~~~~~v~IiG~-G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~----------------------~~g~~~~~~d~~ 72 (155)
T 2g1u_A 16 KQKSKYIVIFGC-GRLGSLIANLASSSGHSVVVVDKNEYAFHRLNS----------------------EFSGFTVVGDAA 72 (155)
T ss_dssp -CCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCT----------------------TCCSEEEESCTT
T ss_pred ccCCCcEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHh----------------------cCCCcEEEecCC
Confidence 356788999996 999999999999999999999999876532110 112345667887
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccc
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAG 280 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG 280 (512)
+.+.+.+. .....|++|.+.+
T Consensus 73 ~~~~l~~~------~~~~ad~Vi~~~~ 93 (155)
T 2g1u_A 73 EFETLKEC------GMEKADMVFAFTN 93 (155)
T ss_dssp SHHHHHTT------TGGGCSEEEECSS
T ss_pred CHHHHHHc------CcccCCEEEEEeC
Confidence 76543321 1235788888776
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=96.90 E-value=0.013 Score=58.42 Aligned_cols=114 Identities=12% Similarity=0.099 Sum_probs=71.0
Q ss_pred EEEEECCCChHHHHHHHHHHHCCC--EEEEEEc--ChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCC
Q 010380 179 NVVITGSTRGLGKALAREFLLSGD--RVVVASR--SSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCE 254 (512)
Q Consensus 179 ~vLVTGassGIG~aiA~~La~~Ga--~Vvl~~R--~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd 254 (512)
+|+||||+|.+|..++..|+.+|. +++++++ ++++++....++.+... ....+.... | +
T Consensus 2 KI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~--------------~~~~~~v~~-~--~ 64 (303)
T 1o6z_A 2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIA--------------YDSNTRVRQ-G--G 64 (303)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHT--------------TTCCCEEEE-C--C
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHh--------------hCCCcEEEe-C--C
Confidence 589999999999999999999885 6999999 77666554455544211 011222222 2 2
Q ss_pred hhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeec
Q 010380 255 PADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD 331 (512)
Q Consensus 255 ~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vS 331 (512)
.++ +...|++|+.||... .+ ..+.+ ..+..|+.....+.+.+ .+....+.|+++|
T Consensus 65 ~~a-----------~~~aDvVi~~ag~~~--~~--g~~r~---dl~~~N~~i~~~i~~~i----~~~~p~~~viv~S 119 (303)
T 1o6z_A 65 YED-----------TAGSDVVVITAGIPR--QP--GQTRI---DLAGDNAPIMEDIQSSL----DEHNDDYISLTTS 119 (303)
T ss_dssp GGG-----------GTTCSEEEECCCCCC--CT--TCCHH---HHHHHHHHHHHHHHHHH----HTTCSCCEEEECC
T ss_pred HHH-----------hCCCCEEEEcCCCCC--CC--CCCHH---HHHHHHHHHHHHHHHHH----HHHCCCcEEEEeC
Confidence 222 236899999999754 11 22333 34778887766665554 4443345555543
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00098 Score=68.26 Aligned_cols=75 Identities=20% Similarity=0.216 Sum_probs=55.1
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCCh
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEP 255 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~ 255 (512)
.|++|+|+|+ |++|..+++.+...|++|+++++++++++.+.++ .+.. ...|..+.
T Consensus 187 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~--------------------lGa~---~v~~~~~~ 242 (366)
T 1yqd_A 187 PGKHIGIVGL-GGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKN--------------------FGAD---SFLVSRDQ 242 (366)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHT--------------------SCCS---EEEETTCH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh--------------------cCCc---eEEeccCH
Confidence 6899999996 9999999999999999999999998877544322 1222 12466664
Q ss_pred hhHHHHHHHHHHHcCCCccccccccc
Q 010380 256 ADVQKLSNFAVNEFGSIDIWINNAGT 281 (512)
Q Consensus 256 ~sv~~~~~~i~~~~g~IDvLInnAG~ 281 (512)
+.++ +..+.+|++|+++|.
T Consensus 243 ~~~~-------~~~~~~D~vid~~g~ 261 (366)
T 1yqd_A 243 EQMQ-------AAAGTLDGIIDTVSA 261 (366)
T ss_dssp HHHH-------HTTTCEEEEEECCSS
T ss_pred HHHH-------HhhCCCCEEEECCCc
Confidence 4332 223579999999985
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0016 Score=63.30 Aligned_cols=83 Identities=17% Similarity=0.212 Sum_probs=61.0
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcCh-------------------hhHHHHHHHHHHHHhhhhhhcC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRSS-------------------ESVRMTVTELEENLKEGMMAAG 233 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~-------------------~~l~~~~~el~~~~~~~~~~~g 233 (512)
++++++|+|.|+ ||+|.++|+.|++.|. +|.+++++. .+.+.+.+.+.+..+
T Consensus 28 ~l~~~~VlVvG~-Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np------- 99 (249)
T 1jw9_B 28 ALKDSRVLIVGL-GGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINP------- 99 (249)
T ss_dssp HHHHCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCT-------
T ss_pred HHhCCeEEEEee-CHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCC-------
Confidence 456788999996 7999999999999997 899999997 778777777765322
Q ss_pred CCCcccccCceEEEEEccCCChhhHHHHHHHHHHHcCCCcccccccc
Q 010380 234 GSSKKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAG 280 (512)
Q Consensus 234 ~~~~~~~~g~~v~~v~~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG 280 (512)
..++..+..++++ +.+.+++ ...|++|++..
T Consensus 100 --------~~~v~~~~~~~~~-~~~~~~~-------~~~DvVi~~~d 130 (249)
T 1jw9_B 100 --------HIAITPVNALLDD-AELAALI-------AEHDLVLDCTD 130 (249)
T ss_dssp --------TSEEEEECSCCCH-HHHHHHH-------HTSSEEEECCS
T ss_pred --------CcEEEEEeccCCH-hHHHHHH-------hCCCEEEEeCC
Confidence 3456666666653 3333322 36899998764
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0025 Score=55.84 Aligned_cols=73 Identities=18% Similarity=0.164 Sum_probs=54.2
Q ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhh
Q 010380 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPAD 257 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~s 257 (512)
++++|.|+ |.+|..+|+.|.+.|++|++++++++..+.+. + ..+.++..|.++++.
T Consensus 8 ~~viIiG~-G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~----~-------------------~g~~~i~gd~~~~~~ 63 (140)
T 3fwz_A 8 NHALLVGY-GRVGSLLGEKLLASDIPLVVIETSRTRVDELR----E-------------------RGVRAVLGNAANEEI 63 (140)
T ss_dssp SCEEEECC-SHHHHHHHHHHHHTTCCEEEEESCHHHHHHHH----H-------------------TTCEEEESCTTSHHH
T ss_pred CCEEEECc-CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHH----H-------------------cCCCEEECCCCCHHH
Confidence 45677886 88999999999999999999999988765432 2 134568899999886
Q ss_pred HHHHHHHHHHHcCCCcccccccc
Q 010380 258 VQKLSNFAVNEFGSIDIWINNAG 280 (512)
Q Consensus 258 v~~~~~~i~~~~g~IDvLInnAG 280 (512)
++++ .....|.+|.+.+
T Consensus 64 l~~a------~i~~ad~vi~~~~ 80 (140)
T 3fwz_A 64 MQLA------HLECAKWLILTIP 80 (140)
T ss_dssp HHHT------TGGGCSEEEECCS
T ss_pred HHhc------CcccCCEEEEECC
Confidence 6543 1235677776654
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0017 Score=66.56 Aligned_cols=76 Identities=16% Similarity=0.209 Sum_probs=52.3
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCCh
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEP 255 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~ 255 (512)
.|++|+|+||+|++|..+++.+...|++|++++ ++++++.+ ++ .+.. ...|..+.
T Consensus 183 ~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~-~~~~~~~~-~~--------------------lGa~---~v~~~~~~ 237 (375)
T 2vn8_A 183 TGKRVLILGASGGVGTFAIQVMKAWDAHVTAVC-SQDASELV-RK--------------------LGAD---DVIDYKSG 237 (375)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHH-HH--------------------TTCS---EEEETTSS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEe-ChHHHHHH-HH--------------------cCCC---EEEECCch
Confidence 589999999999999999999999999999888 45554322 22 1222 12355554
Q ss_pred hhHHHHHHHHHHHcCCCccccccccc
Q 010380 256 ADVQKLSNFAVNEFGSIDIWINNAGT 281 (512)
Q Consensus 256 ~sv~~~~~~i~~~~g~IDvLInnAG~ 281 (512)
+-.+ ++.+ .+++|++|+++|.
T Consensus 238 ~~~~----~~~~-~~g~D~vid~~g~ 258 (375)
T 2vn8_A 238 SVEE----QLKS-LKPFDFILDNVGG 258 (375)
T ss_dssp CHHH----HHHT-SCCBSEEEESSCT
T ss_pred HHHH----HHhh-cCCCCEEEECCCC
Confidence 3222 2222 3579999999985
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0023 Score=63.19 Aligned_cols=48 Identities=25% Similarity=0.322 Sum_probs=42.8
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcChhhHHHHHHHH
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRSSESVRMTVTEL 221 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~~~l~~~~~el 221 (512)
.++++|+++|+|+ ||+|++++..|++.|+ +|++++|+.++++++.+++
T Consensus 116 ~~l~~k~~lvlGa-Gg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~ 164 (272)
T 3pwz_A 116 EPLRNRRVLLLGA-GGAVRGALLPFLQAGPSELVIANRDMAKALALRNEL 164 (272)
T ss_dssp CCCTTSEEEEECC-SHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHH
T ss_pred CCccCCEEEEECc-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHh
Confidence 4678999999998 7999999999999996 9999999999888777665
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0024 Score=63.35 Aligned_cols=49 Identities=10% Similarity=0.196 Sum_probs=43.5
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcChhhHHHHHHHHH
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRSSESVRMTVTELE 222 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~~~l~~~~~el~ 222 (512)
.++++|+++|+|+ ||+|++++..|++.|+ +|++++|+.++++++.+++.
T Consensus 122 ~~l~~k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~ 171 (281)
T 3o8q_A 122 VLLKGATILLIGA-GGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVA 171 (281)
T ss_dssp CCCTTCEEEEECC-SHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHG
T ss_pred CCccCCEEEEECc-hHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhh
Confidence 4678999999998 7999999999999996 99999999998887777653
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.004 Score=61.98 Aligned_cols=94 Identities=14% Similarity=0.127 Sum_probs=67.8
Q ss_pred cccCCCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcCh------------------hhHHHHHHHHHHHHhhhhh
Q 010380 170 EEHCKAGPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRSS------------------ESVRMTVTELEENLKEGMM 230 (512)
Q Consensus 170 ~~~~~l~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~------------------~~l~~~~~el~~~~~~~~~ 230 (512)
+...++++++|+|.|+ ||+|.++++.|+..|. ++.+++.+. .+.+.+.+.+.+..
T Consensus 29 ~~q~kL~~~~VlVvGa-GGlGs~va~~La~aGVG~i~lvD~D~Ve~sNL~Rq~~~~~diG~~Ka~aa~~~L~~iN----- 102 (292)
T 3h8v_A 29 SDYEKIRTFAVAIVGV-GGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLFFQPHQAGLSKVQAAEHTLRNIN----- 102 (292)
T ss_dssp ---CGGGGCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBC------------CCTTSBHHHHHHHHHHHHC-----
T ss_pred HHHHHHhCCeEEEECc-CHHHHHHHHHHHHcCCCEEEEECCCccChhhcccccCChhhcCchHHHHHHHHHHhhC-----
Confidence 3445678899999986 7999999999999996 899999876 56666666666543
Q ss_pred hcCCCCcccccCceEEEEEccCCChhhHHHHHHHHHHH----cCCCccccccc
Q 010380 231 AAGGSSKKNLVHAKVAGIACDVCEPADVQKLSNFAVNE----FGSIDIWINNA 279 (512)
Q Consensus 231 ~~g~~~~~~~~g~~v~~v~~Dltd~~sv~~~~~~i~~~----~g~IDvLInnA 279 (512)
+..++..+..++++.+.+..+++.+... ....|+||.+.
T Consensus 103 ----------P~v~v~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~DlVid~~ 145 (292)
T 3h8v_A 103 ----------PDVLFEVHNYNITTVENFQHFMDRISNGGLEEGKPVDLVLSCV 145 (292)
T ss_dssp ----------TTSEEEEECCCTTSHHHHHHHHHHHHHBSSSTTBCCSEEEECC
T ss_pred ----------CCcEEEEecccCCcHHHHHHHhhhhcccccccCCCCCEEEECC
Confidence 3467888888888777777666544321 13678887654
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.025 Score=57.14 Aligned_cols=118 Identities=19% Similarity=0.145 Sum_probs=76.3
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGD--RVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga--~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
..+.|.|+|+ |.+|.++|..|+..|. +|++.++++++++....+|....+. .+..+.....|
T Consensus 4 ~~~kI~ViGa-G~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~-------------~~~~v~i~~~~-- 67 (326)
T 3pqe_A 4 HVNKVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAF-------------APQPVKTSYGT-- 67 (326)
T ss_dssp SCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGG-------------SSSCCEEEEEC--
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhcccc-------------ccCCeEEEeCc--
Confidence 4567899996 9999999999999996 8999999999888777777663211 11122222222
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
.+ .+..-|++|..||... .+ ..+.. ..++.|..- .+.+.+.+.+....+.++++|-
T Consensus 68 -~~-----------a~~~aDvVvi~ag~p~--kp--G~~R~---dL~~~N~~I----v~~i~~~I~~~~p~a~vlvvtN 123 (326)
T 3pqe_A 68 -YE-----------DCKDADIVCICAGANQ--KP--GETRL---ELVEKNLKI----FKGIVSEVMASGFDGIFLVATN 123 (326)
T ss_dssp -GG-----------GGTTCSEEEECCSCCC--CT--TCCHH---HHHHHHHHH----HHHHHHHHHHTTCCSEEEECSS
T ss_pred -HH-----------HhCCCCEEEEecccCC--CC--CccHH---HHHHHHHHH----HHHHHHHHHHhcCCeEEEEcCC
Confidence 11 2336899999999743 21 23332 345666544 4444555555545677777764
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0015 Score=59.86 Aligned_cols=78 Identities=15% Similarity=0.192 Sum_probs=55.9
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHC-CCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLS-GDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~-Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
++.+++++|.|+ |.+|..+|+.|.+. |++|+++++++++.+.+ .+ .+ +..+..|.
T Consensus 36 ~~~~~~v~IiG~-G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~----~~-----------------~g--~~~~~gd~ 91 (183)
T 3c85_A 36 NPGHAQVLILGM-GRIGTGAYDELRARYGKISLGIEIREEAAQQH----RS-----------------EG--RNVISGDA 91 (183)
T ss_dssp CCTTCSEEEECC-SHHHHHHHHHHHHHHCSCEEEEESCHHHHHHH----HH-----------------TT--CCEEECCT
T ss_pred CCCCCcEEEECC-CHHHHHHHHHHHhccCCeEEEEECCHHHHHHH----HH-----------------CC--CCEEEcCC
Confidence 456778889984 99999999999999 99999999998776542 22 12 34567898
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccc
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAG 280 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG 280 (512)
++++.+.++ ......|++|.+.+
T Consensus 92 ~~~~~l~~~-----~~~~~ad~vi~~~~ 114 (183)
T 3c85_A 92 TDPDFWERI-----LDTGHVKLVLLAMP 114 (183)
T ss_dssp TCHHHHHTB-----CSCCCCCEEEECCS
T ss_pred CCHHHHHhc-----cCCCCCCEEEEeCC
Confidence 887654322 01246788887665
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0012 Score=58.19 Aligned_cols=43 Identities=23% Similarity=0.334 Sum_probs=38.0
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHH
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTE 220 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~e 220 (512)
+++++|.|+ |++|..+++.|.+.|++|++.+|++++.++..++
T Consensus 21 ~~~v~iiG~-G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~ 63 (144)
T 3oj0_A 21 GNKILLVGN-GMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEK 63 (144)
T ss_dssp CCEEEEECC-SHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHH
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHH
Confidence 789999996 9999999999999999999999999887665544
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0066 Score=61.52 Aligned_cols=40 Identities=20% Similarity=0.216 Sum_probs=35.4
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHH
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRM 216 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~ 216 (512)
.|++|+|+|+ |++|...++.+...|++|+++++++++++.
T Consensus 168 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~ 207 (352)
T 1e3j_A 168 LGTTVLVIGA-GPIGLVSVLAAKAYGAFVVCTARSPRRLEV 207 (352)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEcCCHHHHHH
Confidence 5789999997 899999999888899999999999887654
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0035 Score=64.00 Aligned_cols=78 Identities=22% Similarity=0.138 Sum_probs=54.9
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCCh
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEP 255 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~ 255 (512)
.|++|+|+| +|++|...++.+...|++|+++++++++++.+ +++ +.. ...| .+.
T Consensus 189 ~g~~VlV~G-~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~-~~l--------------------Ga~---~vi~-~~~ 242 (363)
T 3uog_A 189 AGDRVVVQG-TGGVALFGLQIAKATGAEVIVTSSSREKLDRA-FAL--------------------GAD---HGIN-RLE 242 (363)
T ss_dssp TTCEEEEES-SBHHHHHHHHHHHHTTCEEEEEESCHHHHHHH-HHH--------------------TCS---EEEE-TTT
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHcCCEEEEEecCchhHHHH-HHc--------------------CCC---EEEc-CCc
Confidence 588999999 89999999999999999999999998876543 222 221 1235 443
Q ss_pred hhHHHHHHHHHHHcCCCcccccccc
Q 010380 256 ADVQKLSNFAVNEFGSIDIWINNAG 280 (512)
Q Consensus 256 ~sv~~~~~~i~~~~g~IDvLInnAG 280 (512)
+++.+.+.++.. ..++|++|+++|
T Consensus 243 ~~~~~~v~~~~~-g~g~D~vid~~g 266 (363)
T 3uog_A 243 EDWVERVYALTG-DRGADHILEIAG 266 (363)
T ss_dssp SCHHHHHHHHHT-TCCEEEEEEETT
T ss_pred ccHHHHHHHHhC-CCCceEEEECCC
Confidence 444444333322 126999999998
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0021 Score=65.09 Aligned_cols=40 Identities=28% Similarity=0.259 Sum_probs=36.2
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcChhhHHH
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRSSESVRM 216 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~~~l~~ 216 (512)
.|++|+|+|+ |++|..+++.+...|+ +|+++++++++++.
T Consensus 167 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~ 207 (348)
T 2d8a_A 167 SGKSVLITGA-GPLGLLGIAVAKASGAYPVIVSEPSDFRREL 207 (348)
T ss_dssp TTCCEEEECC-SHHHHHHHHHHHHTTCCSEEEECSCHHHHHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHH
Confidence 7889999999 9999999999999999 99999999877654
|
| >1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0055 Score=62.28 Aligned_cols=39 Identities=15% Similarity=0.088 Sum_probs=34.2
Q ss_pred CC-CEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhH
Q 010380 176 GP-RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESV 214 (512)
Q Consensus 176 ~g-k~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l 214 (512)
.| ++|+|+||+|++|...++.+...|++|++++++.+++
T Consensus 166 ~g~~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~ 205 (364)
T 1gu7_A 166 PGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNL 205 (364)
T ss_dssp TTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTH
T ss_pred CCCcEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCcccc
Confidence 46 8999999999999999988888999999998877653
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0017 Score=65.63 Aligned_cols=77 Identities=16% Similarity=0.222 Sum_probs=53.7
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCC
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCE 254 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd 254 (512)
.|++|+|+|+ |++|..+++.+...|+ +|+.+++++++++.+. ++ . . ...|..+
T Consensus 164 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~-~l-a-------------------~----~v~~~~~ 217 (343)
T 2dq4_A 164 SGKSVLITGA-GPIGLMAAMVVRASGAGPILVSDPNPYRLAFAR-PY-A-------------------D----RLVNPLE 217 (343)
T ss_dssp TTSCEEEECC-SHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGT-TT-C-------------------S----EEECTTT
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH-Hh-H-------------------H----hccCcCc
Confidence 6889999999 9999999999989999 9999999977654221 11 0 1 1245554
Q ss_pred hhhHHHHHHHHHHHcCCCccccccccc
Q 010380 255 PADVQKLSNFAVNEFGSIDIWINNAGT 281 (512)
Q Consensus 255 ~~sv~~~~~~i~~~~g~IDvLInnAG~ 281 (512)
. ++.+.+.++. ..++|++|+++|.
T Consensus 218 ~-~~~~~~~~~~--~~g~D~vid~~g~ 241 (343)
T 2dq4_A 218 E-DLLEVVRRVT--GSGVEVLLEFSGN 241 (343)
T ss_dssp S-CHHHHHHHHH--SSCEEEEEECSCC
T ss_pred c-CHHHHHHHhc--CCCCCEEEECCCC
Confidence 3 3333333332 3469999999984
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0065 Score=61.79 Aligned_cols=81 Identities=15% Similarity=0.151 Sum_probs=56.6
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCC
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDR-VVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCE 254 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~-Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd 254 (512)
.|++|+|+|+ |++|...++.+...|++ |+++++++++++.+. ++ . ..+..+..|-.+
T Consensus 179 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~-~l-~-------------------~~~~~~~~~~~~ 236 (363)
T 3m6i_A 179 LGDPVLICGA-GPIGLITMLCAKAAGACPLVITDIDEGRLKFAK-EI-C-------------------PEVVTHKVERLS 236 (363)
T ss_dssp TTCCEEEECC-SHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHH-HH-C-------------------TTCEEEECCSCC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH-Hh-c-------------------hhcccccccccc
Confidence 5789999998 99999999998899997 999999988775432 22 1 223334445444
Q ss_pred hhhHHHHHHHHHHHc--CCCccccccccc
Q 010380 255 PADVQKLSNFAVNEF--GSIDIWINNAGT 281 (512)
Q Consensus 255 ~~sv~~~~~~i~~~~--g~IDvLInnAG~ 281 (512)
.+++.+. +.+.. ..+|++|.++|.
T Consensus 237 ~~~~~~~---v~~~t~g~g~Dvvid~~g~ 262 (363)
T 3m6i_A 237 AEESAKK---IVESFGGIEPAVALECTGV 262 (363)
T ss_dssp HHHHHHH---HHHHTSSCCCSEEEECSCC
T ss_pred hHHHHHH---HHHHhCCCCCCEEEECCCC
Confidence 4544433 33333 369999999984
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0059 Score=63.50 Aligned_cols=46 Identities=24% Similarity=0.394 Sum_probs=40.0
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcChhhHHHHHHH
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRSSESVRMTVTE 220 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~~~l~~~~~e 220 (512)
++.|++++|.|+ |++|..+++.|...|+ +|++++|+.+++++..++
T Consensus 164 ~l~g~~VlIiGa-G~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~ 210 (404)
T 1gpj_A 164 SLHDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTYERAVELARD 210 (404)
T ss_dssp CCTTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHH
T ss_pred cccCCEEEEECh-HHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHH
Confidence 468999999998 9999999999999998 999999998876555443
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0088 Score=56.27 Aligned_cols=73 Identities=21% Similarity=0.167 Sum_probs=55.2
Q ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhhH
Q 010380 179 NVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPADV 258 (512)
Q Consensus 179 ~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~sv 258 (512)
.++|.|+ |.+|..+|+.|.++|++|++++++++..+...++ ..+.++..|.++++.+
T Consensus 2 ~iiIiG~-G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~----------------------~~~~~i~gd~~~~~~l 58 (218)
T 3l4b_C 2 KVIIIGG-ETTAYYLARSMLSRKYGVVIINKDRELCEEFAKK----------------------LKATIIHGDGSHKEIL 58 (218)
T ss_dssp CEEEECC-HHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHH----------------------SSSEEEESCTTSHHHH
T ss_pred EEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHH----------------------cCCeEEEcCCCCHHHH
Confidence 4789996 8999999999999999999999998876543322 1345688999998766
Q ss_pred HHHHHHHHHHcCCCcccccccc
Q 010380 259 QKLSNFAVNEFGSIDIWINNAG 280 (512)
Q Consensus 259 ~~~~~~i~~~~g~IDvLInnAG 280 (512)
+++ .....|++|.+.+
T Consensus 59 ~~a------~i~~ad~vi~~~~ 74 (218)
T 3l4b_C 59 RDA------EVSKNDVVVILTP 74 (218)
T ss_dssp HHH------TCCTTCEEEECCS
T ss_pred Hhc------CcccCCEEEEecC
Confidence 543 1246788876554
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0049 Score=62.12 Aligned_cols=77 Identities=23% Similarity=0.238 Sum_probs=54.6
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCCh
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEP 255 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~ 255 (512)
.|++++|+|+ |++|...++.+...|++|+.+++++++++.+ +++ +... ..|..+.
T Consensus 166 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~-~~l--------------------Ga~~---~i~~~~~ 220 (340)
T 3s2e_A 166 PGQWVVISGI-GGLGHVAVQYARAMGLRVAAVDIDDAKLNLA-RRL--------------------GAEV---AVNARDT 220 (340)
T ss_dssp TTSEEEEECC-STTHHHHHHHHHHTTCEEEEEESCHHHHHHH-HHT--------------------TCSE---EEETTTS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEeCCHHHHHHH-HHc--------------------CCCE---EEeCCCc
Confidence 5789999997 8999999999999999999999998876533 221 2221 2355554
Q ss_pred hhHHHHHHHHHHHcCCCccccccccc
Q 010380 256 ADVQKLSNFAVNEFGSIDIWINNAGT 281 (512)
Q Consensus 256 ~sv~~~~~~i~~~~g~IDvLInnAG~ 281 (512)
+..+.+ .+..+.+|++|.++|.
T Consensus 221 ~~~~~~----~~~~g~~d~vid~~g~ 242 (340)
T 3s2e_A 221 DPAAWL----QKEIGGAHGVLVTAVS 242 (340)
T ss_dssp CHHHHH----HHHHSSEEEEEESSCC
T ss_pred CHHHHH----HHhCCCCCEEEEeCCC
Confidence 433333 2234689999999874
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0047 Score=63.14 Aligned_cols=79 Identities=13% Similarity=0.180 Sum_probs=55.2
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCC
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCE 254 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd 254 (512)
.|++|+|+|+ |++|...++.+...|+ +|+.+++++++++.+. + .+.. ...|..+
T Consensus 192 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~-~--------------------lGa~---~vi~~~~ 246 (374)
T 1cdo_A 192 PGSTCAVFGL-GAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAK-V--------------------FGAT---DFVNPND 246 (374)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH-H--------------------TTCC---EEECGGG
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH-H--------------------hCCc---eEEeccc
Confidence 5789999996 9999999999889999 8999999988876432 2 1222 1235543
Q ss_pred -hhhHHHHHHHHHHHcCCCccccccccc
Q 010380 255 -PADVQKLSNFAVNEFGSIDIWINNAGT 281 (512)
Q Consensus 255 -~~sv~~~~~~i~~~~g~IDvLInnAG~ 281 (512)
.+++.+.+.++.. +.+|++|+++|.
T Consensus 247 ~~~~~~~~~~~~~~--~g~D~vid~~g~ 272 (374)
T 1cdo_A 247 HSEPISQVLSKMTN--GGVDFSLECVGN 272 (374)
T ss_dssp CSSCHHHHHHHHHT--SCBSEEEECSCC
T ss_pred cchhHHHHHHHHhC--CCCCEEEECCCC
Confidence 1344444444432 479999999985
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=96.34 E-value=0.019 Score=58.02 Aligned_cols=119 Identities=18% Similarity=0.227 Sum_probs=70.0
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEcc
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGD--RVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACD 251 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga--~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~D 251 (512)
+..++.|.|+|+ |++|.++|..|+..|. +|++.++++++++....++....+- . ..+.....
T Consensus 6 ~~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~-------------~-~~~~i~~~- 69 (326)
T 3vku_A 6 DKDHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPF-------------T-SPKKIYSA- 69 (326)
T ss_dssp -CCCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGG-------------S-CCCEEEEC-
T ss_pred cCCCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhh-------------c-CCcEEEEC-
Confidence 446678999996 9999999999999986 8999999998888777777552110 0 12222221
Q ss_pred CCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeec
Q 010380 252 VCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD 331 (512)
Q Consensus 252 ltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vS 331 (512)
+.+ .+..-|++|+.||... .+ ..+ -...++.|.-- .+.+.+.+.+....+.++++|
T Consensus 70 --~~~-----------a~~~aDiVvi~ag~~~--kp--G~t---R~dL~~~N~~I----~~~i~~~i~~~~p~a~ilvvt 125 (326)
T 3vku_A 70 --EYS-----------DAKDADLVVITAGAPQ--KP--GET---RLDLVNKNLKI----LKSIVDPIVDSGFNGIFLVAA 125 (326)
T ss_dssp --CGG-----------GGTTCSEEEECCCCC-----------------------C----HHHHHHHHHTTTCCSEEEECS
T ss_pred --cHH-----------HhcCCCEEEECCCCCC--CC--Cch---HHHHHHHHHHH----HHHHHHHHHhcCCceEEEEcc
Confidence 222 2346899999999743 11 112 23345556543 444555555555567777775
Q ss_pred C
Q 010380 332 G 332 (512)
Q Consensus 332 S 332 (512)
-
T Consensus 126 N 126 (326)
T 3vku_A 126 N 126 (326)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0084 Score=61.06 Aligned_cols=118 Identities=9% Similarity=0.104 Sum_probs=71.5
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 175 AGPRNVVITGSTRGLGKALAREFLLSGD--RVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 175 l~gk~vLVTGassGIG~aiA~~La~~Ga--~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
+.++.|.|+|++|.+|..+|..++..|. +|++++.++++++....++.... ....++.+ .
T Consensus 6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~--------------~~~~~i~~-t--- 67 (343)
T 3fi9_A 6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCG--------------FEGLNLTF-T--- 67 (343)
T ss_dssp SCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHC--------------CTTCCCEE-E---
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCc--------------CCCCceEE-c---
Confidence 4567899999999999999999999994 89999999988877776775520 01112221 1
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCe-EEeec
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGH-IFNMD 331 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~-IV~vS 331 (512)
.+..+. +..-|++|.+||... .+ ..+. ...++.|..-...+ .+.+.+....+. |+++|
T Consensus 68 ---~d~~~a-------l~dADvVvitaG~p~--kp--G~~R---~dLl~~N~~I~~~i----~~~i~~~~p~a~~vlvvs 126 (343)
T 3fi9_A 68 ---SDIKEA-------LTDAKYIVSSGGAPR--KE--GMTR---EDLLKGNAEIAAQL----GKDIKSYCPDCKHVIIIF 126 (343)
T ss_dssp ---SCHHHH-------HTTEEEEEECCC-----------CH---HHHHHHHHHHHHHH----HHHHHHHCTTCCEEEECS
T ss_pred ---CCHHHH-------hCCCCEEEEccCCCC--CC--CCCH---HHHHHHHHHHHHHH----HHHHHHhccCcEEEEEec
Confidence 122221 236799999999743 21 2222 34466666544444 444444434564 66664
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0019 Score=64.84 Aligned_cols=39 Identities=21% Similarity=0.280 Sum_probs=35.1
Q ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHH
Q 010380 179 NVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMT 217 (512)
Q Consensus 179 ~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~ 217 (512)
+++|+||+||+|...++.+...|++|+++++++++++.+
T Consensus 152 ~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~ 190 (328)
T 1xa0_A 152 PVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYL 190 (328)
T ss_dssp CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHH
T ss_pred eEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 699999999999999999999999999999998876543
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0056 Score=62.60 Aligned_cols=79 Identities=15% Similarity=0.225 Sum_probs=54.5
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCC
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCE 254 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd 254 (512)
.|++|+|+|+ |++|..+++.+...|+ +|+.+++++++++.+ +++ +.. ...|..+
T Consensus 191 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~-~~l--------------------Ga~---~vi~~~~ 245 (374)
T 2jhf_A 191 QGSTCAVFGL-GGVGLSVIMGCKAAGAARIIGVDINKDKFAKA-KEV--------------------GAT---ECVNPQD 245 (374)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHH-HHT--------------------TCS---EEECGGG
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH-HHh--------------------CCc---eEecccc
Confidence 5789999995 9999999999989999 899999998887543 221 221 1235443
Q ss_pred -hhhHHHHHHHHHHHcCCCccccccccc
Q 010380 255 -PADVQKLSNFAVNEFGSIDIWINNAGT 281 (512)
Q Consensus 255 -~~sv~~~~~~i~~~~g~IDvLInnAG~ 281 (512)
.+++.+.+.++.. +.+|++|+++|.
T Consensus 246 ~~~~~~~~~~~~~~--~g~D~vid~~g~ 271 (374)
T 2jhf_A 246 YKKPIQEVLTEMSN--GGVDFSFEVIGR 271 (374)
T ss_dssp CSSCHHHHHHHHTT--SCBSEEEECSCC
T ss_pred cchhHHHHHHHHhC--CCCcEEEECCCC
Confidence 1334444443322 479999999985
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.056 Score=54.29 Aligned_cols=122 Identities=16% Similarity=0.165 Sum_probs=75.0
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcC--hhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEE
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRS--SESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIA 249 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~--~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~ 249 (512)
|+++.+.+.|+|+ |.+|..+|..|+..|. +|++.+++ +++++....++.+..+.. ....++.. .
T Consensus 4 m~~~~~kv~ViGa-G~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~-----------~~~~~i~~-t 70 (315)
T 3tl2_A 4 MTIKRKKVSVIGA-GFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQ-----------GFDANIIG-T 70 (315)
T ss_dssp CCCCCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHH-----------TCCCCEEE-E
T ss_pred cccCCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhc-----------cCCCEEEE-c
Confidence 4566788999997 9999999999999998 99999999 566655555554421100 01122221 1
Q ss_pred ccCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEe
Q 010380 250 CDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFN 329 (512)
Q Consensus 250 ~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~ 329 (512)
+|.+ .+..-|++|.+||... .+ ..+. ...++.|..-.-.+ .+.+.+....+.+++
T Consensus 71 ---~d~~-----------a~~~aDvVIiaag~p~--kp--g~~R---~dl~~~N~~i~~~i----~~~i~~~~p~a~vlv 125 (315)
T 3tl2_A 71 ---SDYA-----------DTADSDVVVITAGIAR--KP--GMSR---DDLVATNSKIMKSI----TRDIAKHSPNAIIVV 125 (315)
T ss_dssp ---SCGG-----------GGTTCSEEEECCSCCC--CT--TCCH---HHHHHHHHHHHHHH----HHHHHHHCTTCEEEE
T ss_pred ---CCHH-----------HhCCCCEEEEeCCCCC--CC--CCCH---HHHHHHHHHHHHHH----HHHHHHhCCCeEEEE
Confidence 1222 2346899999999854 22 2333 33456665544444 444444335667777
Q ss_pred ecC
Q 010380 330 MDG 332 (512)
Q Consensus 330 vSS 332 (512)
+|-
T Consensus 126 vsN 128 (315)
T 3tl2_A 126 LTN 128 (315)
T ss_dssp CCS
T ss_pred CCC
Confidence 753
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=96.16 E-value=0.024 Score=57.50 Aligned_cols=40 Identities=20% Similarity=0.193 Sum_probs=34.9
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcChhhHHH
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRSSESVRM 216 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~~~l~~ 216 (512)
.|++|+|+|+ |++|...++.+...|+ +|+++++++++++.
T Consensus 171 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~ 211 (356)
T 1pl8_A 171 LGHKVLVCGA-GPIGMVTLLVAKAMGAAQVVVTDLSATRLSK 211 (356)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHH
Confidence 5789999996 8999999998888999 89999999877653
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0037 Score=63.64 Aligned_cols=41 Identities=27% Similarity=0.190 Sum_probs=36.5
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHH
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMT 217 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~ 217 (512)
.|++|+|+|+ |++|..+++.+...|++|+.+++++++++.+
T Consensus 179 ~g~~VlV~Ga-G~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~ 219 (360)
T 1piw_A 179 PGKKVGIVGL-GGIGSMGTLISKAMGAETYVISRSSRKREDA 219 (360)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSSTTHHHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence 5789999999 9999999998888999999999998887543
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0078 Score=61.58 Aligned_cols=79 Identities=19% Similarity=0.206 Sum_probs=54.4
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCC
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCE 254 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd 254 (512)
.|++|+|+|+ |++|...++.+...|+ +|+++++++++++.+ +++ +.. ...|..+
T Consensus 195 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a-~~l--------------------Ga~---~vi~~~~ 249 (376)
T 1e3i_A 195 PGSTCAVFGL-GCVGLSAIIGCKIAGASRIIAIDINGEKFPKA-KAL--------------------GAT---DCLNPRE 249 (376)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHH-HHT--------------------TCS---EEECGGG
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH-HHh--------------------CCc---EEEcccc
Confidence 5789999996 9999999998888999 899999998887543 221 221 1234443
Q ss_pred -hhhHHHHHHHHHHHcCCCccccccccc
Q 010380 255 -PADVQKLSNFAVNEFGSIDIWINNAGT 281 (512)
Q Consensus 255 -~~sv~~~~~~i~~~~g~IDvLInnAG~ 281 (512)
.+++.+.+.++.. +.+|++|.++|.
T Consensus 250 ~~~~~~~~v~~~~~--~g~Dvvid~~G~ 275 (376)
T 1e3i_A 250 LDKPVQDVITELTA--GGVDYSLDCAGT 275 (376)
T ss_dssp CSSCHHHHHHHHHT--SCBSEEEESSCC
T ss_pred ccchHHHHHHHHhC--CCccEEEECCCC
Confidence 1234444443322 479999999985
|
| >1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0069 Score=61.65 Aligned_cols=78 Identities=17% Similarity=0.169 Sum_probs=53.5
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHC-CCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCC
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLS-GDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCE 254 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~-Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd 254 (512)
.|++|+|+|+ |++|...++.+... |++|+.+++++++++.+. ++ |... ..|..+
T Consensus 186 ~g~~VlV~Ga-G~vG~~avqlak~~~Ga~Vi~~~~~~~~~~~~~-~l--------------------Ga~~---vi~~~~ 240 (359)
T 1h2b_A 186 PGAYVAIVGV-GGLGHIAVQLLKVMTPATVIALDVKEEKLKLAE-RL--------------------GADH---VVDARR 240 (359)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHH-HT--------------------TCSE---EEETTS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH-Hh--------------------CCCE---EEeccc
Confidence 5789999999 89999999888888 999999999988765432 21 2221 235555
Q ss_pred hhhHHHHHHHHHHHcCCCccccccccc
Q 010380 255 PADVQKLSNFAVNEFGSIDIWINNAGT 281 (512)
Q Consensus 255 ~~sv~~~~~~i~~~~g~IDvLInnAG~ 281 (512)
. +.+.+.++.. ...+|++|.++|.
T Consensus 241 ~--~~~~v~~~~~-g~g~Dvvid~~G~ 264 (359)
T 1h2b_A 241 D--PVKQVMELTR-GRGVNVAMDFVGS 264 (359)
T ss_dssp C--HHHHHHHHTT-TCCEEEEEESSCC
T ss_pred h--HHHHHHHHhC-CCCCcEEEECCCC
Confidence 3 3333333221 1269999999985
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0066 Score=62.00 Aligned_cols=79 Identities=15% Similarity=0.202 Sum_probs=54.3
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCC
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCE 254 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd 254 (512)
.|++|+|+|+ |++|...++.+...|+ +|+.+++++++++.+. ++ +.. ...|..+
T Consensus 190 ~g~~VlV~Ga-G~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~-~l--------------------Ga~---~vi~~~~ 244 (373)
T 2fzw_A 190 PGSVCAVFGL-GGVGLAVIMGCKVAGASRIIGVDINKDKFARAK-EF--------------------GAT---ECINPQD 244 (373)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH-HH--------------------TCS---EEECGGG
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH-Hc--------------------CCc---eEecccc
Confidence 5789999996 9999999998888999 8999999988875432 22 221 1234443
Q ss_pred -hhhHHHHHHHHHHHcCCCccccccccc
Q 010380 255 -PADVQKLSNFAVNEFGSIDIWINNAGT 281 (512)
Q Consensus 255 -~~sv~~~~~~i~~~~g~IDvLInnAG~ 281 (512)
.+++.+.+.++.. +.+|++|+++|.
T Consensus 245 ~~~~~~~~v~~~~~--~g~D~vid~~g~ 270 (373)
T 2fzw_A 245 FSKPIQEVLIEMTD--GGVDYSFECIGN 270 (373)
T ss_dssp CSSCHHHHHHHHTT--SCBSEEEECSCC
T ss_pred ccccHHHHHHHHhC--CCCCEEEECCCc
Confidence 1334444433322 479999999984
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0077 Score=61.67 Aligned_cols=74 Identities=19% Similarity=0.201 Sum_probs=53.4
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCCh
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEP 255 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~ 255 (512)
.|++|+|+|+ |++|...++.+...|++|+++++++++++.+. ++ +.. ...|..+.
T Consensus 194 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~-~l--------------------Ga~---~vi~~~~~ 248 (369)
T 1uuf_A 194 PGKKVGVVGI-GGLGHMGIKLAHAMGAHVVAFTTSEAKREAAK-AL--------------------GAD---EVVNSRNA 248 (369)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSGGGHHHHH-HH--------------------TCS---EEEETTCH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-Hc--------------------CCc---EEeccccH
Confidence 5789999998 89999999988889999999999988876442 22 111 12355554
Q ss_pred hhHHHHHHHHHHHcCCCccccccccc
Q 010380 256 ADVQKLSNFAVNEFGSIDIWINNAGT 281 (512)
Q Consensus 256 ~sv~~~~~~i~~~~g~IDvLInnAG~ 281 (512)
+.++ ++. +++|++|+++|.
T Consensus 249 ~~~~----~~~---~g~Dvvid~~g~ 267 (369)
T 1uuf_A 249 DEMA----AHL---KSFDFILNTVAA 267 (369)
T ss_dssp HHHH----TTT---TCEEEEEECCSS
T ss_pred HHHH----Hhh---cCCCEEEECCCC
Confidence 3322 221 579999999985
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.97 E-value=0.017 Score=59.22 Aligned_cols=40 Identities=25% Similarity=0.297 Sum_probs=35.5
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEEcChhhHHH
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSG-DRVVVASRSSESVRM 216 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~G-a~Vvl~~R~~~~l~~ 216 (512)
.|++|+|+| +|++|...++.+...| ++|+++++++++++.
T Consensus 195 ~g~~VlV~G-aG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~ 235 (380)
T 1vj0_A 195 AGKTVVIQG-AGPLGLFGVVIARSLGAENVIVIAGSPNRLKL 235 (380)
T ss_dssp BTCEEEEEC-CSHHHHHHHHHHHHTTBSEEEEEESCHHHHHH
T ss_pred CCCEEEEEC-cCHHHHHHHHHHHHcCCceEEEEcCCHHHHHH
Confidence 478999999 8999999999988999 599999999887654
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.028 Score=56.38 Aligned_cols=115 Identities=18% Similarity=0.254 Sum_probs=67.9
Q ss_pred EEEEECCCChHHHHHHHHHHHCC--CEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChh
Q 010380 179 NVVITGSTRGLGKALAREFLLSG--DRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPA 256 (512)
Q Consensus 179 ~vLVTGassGIG~aiA~~La~~G--a~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~ 256 (512)
.|.|+||+|.+|..++..|+..| .+|+++++++ .+....++.+. ....++.... ..+
T Consensus 2 KI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~--~~~~a~dL~~~---------------~~~~~l~~~~----~t~ 60 (314)
T 1mld_A 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH--TPGVAADLSHI---------------ETRATVKGYL----GPE 60 (314)
T ss_dssp EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS--HHHHHHHHTTS---------------SSSCEEEEEE----SGG
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCc--cHHHHHHHhcc---------------CcCceEEEec----CCC
Confidence 47999999999999999999988 6899999987 23333333220 0111222221 012
Q ss_pred hHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 257 DVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 257 sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+.++. +...|++|+.||.... + ..+..+ .+..|+-....+.+.+.. ....+.|+++|-
T Consensus 61 d~~~a-------~~~aDvVvi~ag~~~~--~--g~~r~d---l~~~n~~i~~~i~~~i~~----~~p~a~viv~sN 118 (314)
T 1mld_A 61 QLPDC-------LKGCDVVVIPAGVPRK--P--GMTRDD---LFNTNATIVATLTAACAQ----HCPDAMICIISN 118 (314)
T ss_dssp GHHHH-------HTTCSEEEECCSCCCC--T--TCCGGG---GHHHHHHHHHHHHHHHHH----HCTTSEEEECSS
T ss_pred CHHHH-------hCCCCEEEECCCcCCC--C--CCcHHH---HHHHHHHHHHHHHHHHHh----hCCCeEEEEECC
Confidence 23322 2368999999998541 1 122222 356666655555544443 334578888753
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0091 Score=60.36 Aligned_cols=41 Identities=22% Similarity=0.261 Sum_probs=36.4
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHH
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMT 217 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~ 217 (512)
.|++|+|+|+ |++|...++.+...|++|+++++++++++.+
T Consensus 176 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~ 216 (348)
T 3two_A 176 KGTKVGVAGF-GGLGSMAVKYAVAMGAEVSVFARNEHKKQDA 216 (348)
T ss_dssp TTCEEEEESC-SHHHHHHHHHHHHTTCEEEEECSSSTTHHHH
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Confidence 5889999997 9999999999999999999999998887643
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=95.91 E-value=0.06 Score=54.29 Aligned_cols=120 Identities=18% Similarity=0.208 Sum_probs=72.6
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 175 AGPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 175 l~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
++.+.|.|+|+ |.+|.++|..|+..|. +|++.++++++++....++....... ....++.. ..
T Consensus 5 m~~~kI~viGa-G~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~-----------~~~~~v~~-t~--- 68 (324)
T 3gvi_A 5 MARNKIALIGS-GMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVD-----------GFDAKFTG-AN--- 68 (324)
T ss_dssp -CCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHH-----------TCCCCEEE-ES---
T ss_pred CcCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhc-----------CCCCEEEE-eC---
Confidence 45567999998 9999999999999998 99999999988776666665532100 01122221 11
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
|.+ .+..-|++|..||.... + ..+.. ..+..|.- +.+.+.+.+.+....+.++++|-
T Consensus 69 d~~-----------a~~~aDiVIiaag~p~k--~--G~~R~---dl~~~N~~----i~~~i~~~i~~~~p~a~iivvtN 125 (324)
T 3gvi_A 69 DYA-----------AIEGADVVIVTAGVPRK--P--GMSRD---DLLGINLK----VMEQVGAGIKKYAPEAFVICITN 125 (324)
T ss_dssp SGG-----------GGTTCSEEEECCSCCCC---------C---HHHHHHHH----HHHHHHHHHHHHCTTCEEEECCS
T ss_pred CHH-----------HHCCCCEEEEccCcCCC--C--CCCHH---HHHHhhHH----HHHHHHHHHHHHCCCeEEEecCC
Confidence 222 22367999999997541 1 12222 23444544 34445555554445677777754
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=95.89 E-value=0.1 Score=51.82 Aligned_cols=116 Identities=15% Similarity=0.187 Sum_probs=73.0
Q ss_pred EEEEECCCChHHHHHHHHHHHCCC--EEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChh
Q 010380 179 NVVITGSTRGLGKALAREFLLSGD--RVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPA 256 (512)
Q Consensus 179 ~vLVTGassGIG~aiA~~La~~Ga--~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~ 256 (512)
.+.|+|+ |.+|.++|..|+..|. +|++.++++++++....++....... ....++.. . +|.+
T Consensus 2 kI~ViGa-G~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~-----------~~~~~i~~--t--~d~~ 65 (294)
T 1oju_A 2 KLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGI-----------DKYPKIVG--G--ADYS 65 (294)
T ss_dssp EEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTT-----------TCCCEEEE--E--SCGG
T ss_pred EEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhc-----------CCCCEEEE--e--CCHH
Confidence 4789999 9999999999999997 89999999988765444554422100 01122221 1 1222
Q ss_pred hHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 257 DVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 257 sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+ +..-|++|..||... .+ ..+..+ .+..|. -+.+.+.+.+.+....+.|+++|-
T Consensus 66 a-----------~~~aDiVViaag~~~--kp--G~~R~d---l~~~N~----~i~~~i~~~i~~~~p~a~iivvsN 119 (294)
T 1oju_A 66 L-----------LKGSEIIVVTAGLAR--KP--GMTRLD---LAHKNA----GIIKDIAKKIVENAPESKILVVTN 119 (294)
T ss_dssp G-----------GTTCSEEEECCCCCC--CS--SCCHHH---HHHHHH----HHHHHHHHHHHTTSTTCEEEECSS
T ss_pred H-----------hCCCCEEEECCCCCC--CC--CCcHHH---HHHHHH----HHHHHHHHHHHhhCCCeEEEEeCC
Confidence 2 235799999999754 11 234333 355553 445666666766656677887764
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=95.89 E-value=0.012 Score=57.09 Aligned_cols=83 Identities=16% Similarity=0.196 Sum_probs=57.5
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcCh-------------------hhHHHHHHHHHHHHhhhhhhcC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRSS-------------------ESVRMTVTELEENLKEGMMAAG 233 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~-------------------~~l~~~~~el~~~~~~~~~~~g 233 (512)
++++++|+|.|+ ||+|.++++.|+..|. ++.+++++. .+.+.+.+.+.+..
T Consensus 25 ~l~~~~VlvvG~-GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n-------- 95 (251)
T 1zud_1 25 KLLDSQVLIIGL-GGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLN-------- 95 (251)
T ss_dssp HHHTCEEEEECC-STTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHC--------
T ss_pred HHhcCcEEEEcc-CHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHC--------
Confidence 466789999997 7899999999999997 888887653 56666666666532
Q ss_pred CCCcccccCceEEEEEccCCChhhHHHHHHHHHHHcCCCcccccccc
Q 010380 234 GSSKKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAG 280 (512)
Q Consensus 234 ~~~~~~~~g~~v~~v~~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG 280 (512)
...++..+..++++ +.+.++++ ..|+||++..
T Consensus 96 -------p~~~v~~~~~~~~~-~~~~~~~~-------~~DvVi~~~d 127 (251)
T 1zud_1 96 -------PDIQLTALQQRLTG-EALKDAVA-------RADVVLDCTD 127 (251)
T ss_dssp -------TTSEEEEECSCCCH-HHHHHHHH-------HCSEEEECCS
T ss_pred -------CCCEEEEEeccCCH-HHHHHHHh-------cCCEEEECCC
Confidence 23456666655543 33333332 4688887653
|
| >3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0082 Score=61.67 Aligned_cols=80 Identities=20% Similarity=0.295 Sum_probs=54.4
Q ss_pred CCCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCC
Q 010380 176 GPRNVVITG-STRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCE 254 (512)
Q Consensus 176 ~gk~vLVTG-assGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd 254 (512)
.|.+++|.| |+|++|...++.+...|++|+.+++++++++.+. ++ +... ..|..+
T Consensus 170 ~g~~vlV~gag~G~vG~~a~q~a~~~Ga~Vi~~~~~~~~~~~~~-~l--------------------Ga~~---~~~~~~ 225 (379)
T 3iup_A 170 EGHSALVHTAAASNLGQMLNQICLKDGIKLVNIVRKQEQADLLK-AQ--------------------GAVH---VCNAAS 225 (379)
T ss_dssp TTCSCEEESSTTSHHHHHHHHHHHHHTCCEEEEESSHHHHHHHH-HT--------------------TCSC---EEETTS
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-hC--------------------CCcE---EEeCCC
Confidence 577889987 9999999999998889999999999988765432 21 2211 235444
Q ss_pred hhhHHHHHHHHHHHcCCCccccccccc
Q 010380 255 PADVQKLSNFAVNEFGSIDIWINNAGT 281 (512)
Q Consensus 255 ~~sv~~~~~~i~~~~g~IDvLInnAG~ 281 (512)
.+-.+++.+ +... ..+|++|.++|.
T Consensus 226 ~~~~~~v~~-~t~~-~g~d~v~d~~g~ 250 (379)
T 3iup_A 226 PTFMQDLTE-ALVS-TGATIAFDATGG 250 (379)
T ss_dssp TTHHHHHHH-HHHH-HCCCEEEESCEE
T ss_pred hHHHHHHHH-HhcC-CCceEEEECCCc
Confidence 433333322 2221 269999999996
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0069 Score=61.85 Aligned_cols=41 Identities=15% Similarity=0.243 Sum_probs=34.9
Q ss_pred CCCEEEEECCCChHHHHHHHHHHH-CCCEEEEEEcChhhHHH
Q 010380 176 GPRNVVITGSTRGLGKALAREFLL-SGDRVVVASRSSESVRM 216 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~-~Ga~Vvl~~R~~~~l~~ 216 (512)
.|++|+|+||+|++|...++.+.. .|++|+++++++++++.
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~ 212 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEW 212 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 578999999999999988876665 58999999999887654
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=95.81 E-value=0.005 Score=62.64 Aligned_cols=41 Identities=22% Similarity=0.125 Sum_probs=35.7
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHH
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMT 217 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~ 217 (512)
.|++|+|+|+ |++|...++.+...|++|+++++++++++.+
T Consensus 180 ~g~~VlV~Ga-G~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~ 220 (357)
T 2cf5_A 180 PGLRGGILGL-GGVGHMGVKIAKAMGHHVTVISSSNKKREEA 220 (357)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSTTHHHHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEeCChHHHHHH
Confidence 6889999995 9999999998888999999999998776543
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0066 Score=61.31 Aligned_cols=41 Identities=20% Similarity=0.166 Sum_probs=36.1
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHC--CCEEEEEEcChhhHHHH
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLS--GDRVVVASRSSESVRMT 217 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~--Ga~Vvl~~R~~~~l~~~ 217 (512)
.|++|+|+|+ |++|...++.+... |++|+.+++++++++.+
T Consensus 170 ~g~~VlV~Ga-G~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~ 212 (344)
T 2h6e_A 170 AEPVVIVNGI-GGLAVYTIQILKALMKNITIVGISRSKKHRDFA 212 (344)
T ss_dssp SSCEEEEECC-SHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHH
Confidence 6899999999 89999999988888 99999999998876543
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=95.79 E-value=0.084 Score=53.37 Aligned_cols=120 Identities=9% Similarity=0.096 Sum_probs=75.5
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEcc
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGD--RVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACD 251 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga--~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~D 251 (512)
+...+.|.|+|+ |++|.++|..|+.+|. +|++.++++++++....++.....- ... ...+..
T Consensus 16 ~~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~-------------~~~-~~i~~~- 79 (331)
T 4aj2_A 16 QVPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLF-------------LKT-PKIVSS- 79 (331)
T ss_dssp -CCSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGG-------------CSC-CEEEEC-
T ss_pred cCCCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhc-------------cCC-CeEEEc-
Confidence 456788999997 9999999999999996 8999999998888877777652110 111 111211
Q ss_pred CCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeec
Q 010380 252 VCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD 331 (512)
Q Consensus 252 ltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vS 331 (512)
.|.++ +..-|++|..||... .+ ..+.+ ..++.|.-=. +.+.+.+.+....+.++++|
T Consensus 80 -~d~~~-----------~~~aDiVvi~aG~~~--kp--G~tR~---dL~~~N~~I~----~~i~~~i~~~~p~a~vlvvt 136 (331)
T 4aj2_A 80 -KDYSV-----------TANSKLVIITAGARQ--QE--GESRL---NLVQRNVNIF----KFIIPNVVKYSPQCKLLIVS 136 (331)
T ss_dssp -SSGGG-----------GTTEEEEEECCSCCC--CT--TCCGG---GGHHHHHHHH----HHHHHHHHHHCTTCEEEECS
T ss_pred -CCHHH-----------hCCCCEEEEccCCCC--CC--CccHH---HHHHHHHHHH----HHHHHHHHHHCCCeEEEEec
Confidence 12221 236899999999754 21 23332 3455555433 34444444443567787776
Q ss_pred C
Q 010380 332 G 332 (512)
Q Consensus 332 S 332 (512)
-
T Consensus 137 N 137 (331)
T 4aj2_A 137 N 137 (331)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=95.76 E-value=0.015 Score=59.54 Aligned_cols=79 Identities=13% Similarity=0.113 Sum_probs=53.3
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCC
Q 010380 175 AGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCE 254 (512)
Q Consensus 175 l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd 254 (512)
..|++|+|+||++++|...++.+...|++|+.+. ++++++. .++ .|.. ...|..+
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~-~~~~~~~-~~~--------------------lGa~---~vi~~~~ 217 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLSGYIPIATC-SPHNFDL-AKS--------------------RGAE---EVFDYRA 217 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHH-HHH--------------------TTCS---EEEETTS
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEe-CHHHHHH-HHH--------------------cCCc---EEEECCC
Confidence 4689999999999999999999999999998886 5666542 222 1221 1235555
Q ss_pred hhhHHHHHHHHHHHcCCCccccccccc
Q 010380 255 PADVQKLSNFAVNEFGSIDIWINNAGT 281 (512)
Q Consensus 255 ~~sv~~~~~~i~~~~g~IDvLInnAG~ 281 (512)
.+- .+.+.++. .+++|++|.++|.
T Consensus 218 ~~~-~~~v~~~t--~g~~d~v~d~~g~ 241 (371)
T 3gqv_A 218 PNL-AQTIRTYT--KNNLRYALDCITN 241 (371)
T ss_dssp TTH-HHHHHHHT--TTCCCEEEESSCS
T ss_pred chH-HHHHHHHc--cCCccEEEECCCc
Confidence 432 22222221 2469999999985
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=95.73 E-value=0.022 Score=59.22 Aligned_cols=43 Identities=21% Similarity=0.138 Sum_probs=38.3
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHH
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMT 217 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~ 217 (512)
.+.+++|+|+|+ |.+|+.+++.+...|++|++++|+.++++.+
T Consensus 169 ~l~g~~V~ViGa-G~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~ 211 (401)
T 1x13_A 169 KVPPAKVMVIGA-GVAGLAAIGAANSLGAIVRAFDTRPEVKEQV 211 (401)
T ss_dssp EECCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCGGGHHHH
T ss_pred CcCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence 467999999996 8999999999999999999999998877553
|
| >3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0086 Score=59.34 Aligned_cols=44 Identities=18% Similarity=0.185 Sum_probs=39.0
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcChhhHHHH
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRSSESVRMT 217 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~~~l~~~ 217 (512)
.++++|+++|.|+ ||.|++++..|++.|+ +|+++.|+.++++++
T Consensus 118 ~~~~~k~vlvlGa-GGaaraia~~L~~~G~~~v~v~nRt~~ka~~L 162 (282)
T 3fbt_A 118 VEIKNNICVVLGS-GGAARAVLQYLKDNFAKDIYVVTRNPEKTSEI 162 (282)
T ss_dssp CCCTTSEEEEECS-STTHHHHHHHHHHTTCSEEEEEESCHHHHHHH
T ss_pred CCccCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHH
Confidence 4678999999997 6999999999999998 899999998876544
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0087 Score=59.80 Aligned_cols=35 Identities=17% Similarity=0.230 Sum_probs=32.0
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcC
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRS 210 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~ 210 (512)
.|++++|+||+|++|...++.+...|++|+.++++
T Consensus 152 ~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~~~ 186 (321)
T 3tqh_A 152 QGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTASK 186 (321)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEECH
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEecc
Confidence 58899999999999999999999999999988754
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0082 Score=61.46 Aligned_cols=39 Identities=23% Similarity=0.326 Sum_probs=34.6
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcChhhHH
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRSSESVR 215 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~~~l~ 215 (512)
.|++|+|+|+ |++|...++.+...|+ +|+++++++++++
T Consensus 182 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~ 221 (370)
T 4ej6_A 182 AGSTVAILGG-GVIGLLTVQLARLAGATTVILSTRQATKRR 221 (370)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCHHHHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHH
Confidence 5789999998 8999999999889999 8999999887764
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=95.69 E-value=0.01 Score=60.65 Aligned_cols=79 Identities=16% Similarity=0.207 Sum_probs=53.4
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCC
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCE 254 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd 254 (512)
.|++|+|+|+ |++|...++.+...|+ +|+.+++++++++.+. ++ +... ..|..+
T Consensus 191 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~-~l--------------------Ga~~---vi~~~~ 245 (373)
T 1p0f_A 191 PGSTCAVFGL-GGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAI-EL--------------------GATE---CLNPKD 245 (373)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH-HT--------------------TCSE---EECGGG
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHH-Hc--------------------CCcE---EEeccc
Confidence 5789999996 9999999998888898 8999999988875432 21 2221 234443
Q ss_pred h-hhHHHHHHHHHHHcCCCccccccccc
Q 010380 255 P-ADVQKLSNFAVNEFGSIDIWINNAGT 281 (512)
Q Consensus 255 ~-~sv~~~~~~i~~~~g~IDvLInnAG~ 281 (512)
. +++.+.+.++.. +.+|++|.++|.
T Consensus 246 ~~~~~~~~i~~~t~--gg~Dvvid~~g~ 271 (373)
T 1p0f_A 246 YDKPIYEVICEKTN--GGVDYAVECAGR 271 (373)
T ss_dssp CSSCHHHHHHHHTT--SCBSEEEECSCC
T ss_pred ccchHHHHHHHHhC--CCCCEEEECCCC
Confidence 1 234433333322 479999999984
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=95.68 E-value=0.1 Score=52.53 Aligned_cols=119 Identities=15% Similarity=0.217 Sum_probs=72.4
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCC
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCE 254 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd 254 (512)
+.+.|.|+|+ |.+|.++|..|+..|. +|++.++++++++....++.+..... ....++.. . .|
T Consensus 4 ~~~kI~iiGa-G~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~-----------~~~~~v~~--t--~d 67 (321)
T 3p7m_A 4 ARKKITLVGA-GNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIE-----------GVDFKVRG--T--ND 67 (321)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHH-----------TCCCCEEE--E--SC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhc-----------CCCcEEEE--c--CC
Confidence 3467888995 9999999999999987 99999999988776666665421100 01122221 1 12
Q ss_pred hhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 255 PADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 255 ~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
.+ .+..-|++|+.||.... + ..+..+ .+..|.--. +.+.+.+.+....+.+++++-
T Consensus 68 ~~-----------a~~~aDvVIi~ag~p~k--~--G~~R~d---l~~~N~~i~----~~i~~~i~~~~p~a~vivvtN 123 (321)
T 3p7m_A 68 YK-----------DLENSDVVIVTAGVPRK--P--GMSRDD---LLGINIKVM----QTVGEGIKHNCPNAFVICITN 123 (321)
T ss_dssp GG-----------GGTTCSEEEECCSCCCC--T--TCCHHH---HHHHHHHHH----HHHHHHHHHHCTTCEEEECCS
T ss_pred HH-----------HHCCCCEEEEcCCcCCC--C--CCCHHH---HHHHhHHHH----HHHHHHHHHHCCCcEEEEecC
Confidence 22 22367999999997542 1 234333 345555444 444444444445567777753
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.67 E-value=0.015 Score=60.20 Aligned_cols=40 Identities=25% Similarity=0.316 Sum_probs=35.4
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcChhhHHH
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRSSESVRM 216 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~~~l~~ 216 (512)
.|++|+|+|+ |++|...++.+...|+ +|+++++++++++.
T Consensus 213 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~ 253 (404)
T 3ip1_A 213 PGDNVVILGG-GPIGLAAVAILKHAGASKVILSEPSEVRRNL 253 (404)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCHHHHHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHH
Confidence 5889999998 9999999999889999 89999999887653
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.011 Score=60.39 Aligned_cols=79 Identities=18% Similarity=0.160 Sum_probs=54.5
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCC
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCE 254 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd 254 (512)
.|++|+|+|+ |++|...++.+...|+ +|+++++++++++.+ ++ .+... ..|..+
T Consensus 193 ~g~~VlV~Ga-G~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a-~~--------------------lGa~~---vi~~~~ 247 (378)
T 3uko_A 193 PGSNVAIFGL-GTVGLAVAEGAKTAGASRIIGIDIDSKKYETA-KK--------------------FGVNE---FVNPKD 247 (378)
T ss_dssp TTCCEEEECC-SHHHHHHHHHHHHHTCSCEEEECSCTTHHHHH-HT--------------------TTCCE---EECGGG
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH-HH--------------------cCCcE---EEcccc
Confidence 5788999998 9999999999888999 899999998887532 22 12221 234442
Q ss_pred -hhhHHHHHHHHHHHcCCCccccccccc
Q 010380 255 -PADVQKLSNFAVNEFGSIDIWINNAGT 281 (512)
Q Consensus 255 -~~sv~~~~~~i~~~~g~IDvLInnAG~ 281 (512)
.+++.+.+.++. .+.+|++|.++|.
T Consensus 248 ~~~~~~~~i~~~~--~gg~D~vid~~g~ 273 (378)
T 3uko_A 248 HDKPIQEVIVDLT--DGGVDYSFECIGN 273 (378)
T ss_dssp CSSCHHHHHHHHT--TSCBSEEEECSCC
T ss_pred CchhHHHHHHHhc--CCCCCEEEECCCC
Confidence 234444444332 2479999999984
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* | Back alignment and structure |
|---|
Probab=95.61 E-value=0.02 Score=58.09 Aligned_cols=118 Identities=13% Similarity=0.152 Sum_probs=70.3
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCCC--E-----EEEEEcCh--hhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEE
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSGD--R-----VVVASRSS--ESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAG 247 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~Ga--~-----Vvl~~R~~--~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~ 247 (512)
+.+|+||||+|.||..++..|+..|. + |+++++++ ++++....++.... ..-..
T Consensus 3 ~~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~----------------~~~~~- 65 (333)
T 5mdh_A 3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCA----------------LPLLK- 65 (333)
T ss_dssp CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTC----------------CTTEE-
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHhhh----------------hcccC-
Confidence 35789999999999999999998885 5 99999974 45555556665410 00011
Q ss_pred EEccCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCC-e
Q 010380 248 IACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGG-H 326 (512)
Q Consensus 248 v~~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g-~ 326 (512)
++...++. .+.+...|++|+.||... .+ ..+. ...++.|+.....+.+. +.+....+ .
T Consensus 66 ---~~~~~~~~-------~~~~~daDvVvitAg~pr--kp--G~tR---~dll~~N~~i~~~i~~~----i~~~~~~~~~ 124 (333)
T 5mdh_A 66 ---DVIATDKE-------EIAFKDLDVAILVGSMPR--RD--GMER---KDLLKANVKIFKCQGAA----LDKYAKKSVK 124 (333)
T ss_dssp ---EEEEESCH-------HHHTTTCSEEEECCSCCC--CT--TCCT---TTTHHHHHHHHHHHHHH----HHHHSCTTCE
T ss_pred ---CEEEcCCc-------HHHhCCCCEEEEeCCCCC--CC--CCCH---HHHHHHHHHHHHHHHHH----HHHhCCCCeE
Confidence 11111111 122346899999999753 11 1222 33566777665555444 44443445 4
Q ss_pred EEeecC
Q 010380 327 IFNMDG 332 (512)
Q Consensus 327 IV~vSS 332 (512)
++++|-
T Consensus 125 vivvsN 130 (333)
T 5mdh_A 125 VIVVGN 130 (333)
T ss_dssp EEECSS
T ss_pred EEEcCC
Confidence 777654
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=95.56 E-value=0.021 Score=57.92 Aligned_cols=77 Identities=17% Similarity=0.212 Sum_probs=52.3
Q ss_pred CCCCCEEEEECCCChHHHHH-HHHH-HHCCCE-EEEEEcChh---hHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEE
Q 010380 174 KAGPRNVVITGSTRGLGKAL-AREF-LLSGDR-VVVASRSSE---SVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAG 247 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~ai-A~~L-a~~Ga~-Vvl~~R~~~---~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~ 247 (512)
++.+++|+|+|+ |++|... ++.+ ...|++ |+.++++++ +++.+ ++ .+.. .
T Consensus 170 ~~~~~~VlV~Ga-G~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~-~~--------------------lGa~--~ 225 (357)
T 2b5w_A 170 DWDPSSAFVLGN-GSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDII-EE--------------------LDAT--Y 225 (357)
T ss_dssp CCCCCEEEEECC-SHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHH-HH--------------------TTCE--E
T ss_pred cCCCCEEEEECC-CHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHH-HH--------------------cCCc--c
Confidence 345599999999 9999999 7766 678997 999999887 66433 22 2222 2
Q ss_pred EEccCCChhhHHHHHHHHHHHcCCCccccccccc
Q 010380 248 IACDVCEPADVQKLSNFAVNEFGSIDIWINNAGT 281 (512)
Q Consensus 248 v~~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~ 281 (512)
+ |..+.+ +.+ +.++ .+.+|++|.++|.
T Consensus 226 v--~~~~~~-~~~-i~~~---~gg~Dvvid~~g~ 252 (357)
T 2b5w_A 226 V--DSRQTP-VED-VPDV---YEQMDFIYEATGF 252 (357)
T ss_dssp E--ETTTSC-GGG-HHHH---SCCEEEEEECSCC
T ss_pred c--CCCccC-HHH-HHHh---CCCCCEEEECCCC
Confidence 2 555433 223 3333 2479999999984
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=95.50 E-value=0.089 Score=51.56 Aligned_cols=45 Identities=20% Similarity=0.278 Sum_probs=38.8
Q ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHH
Q 010380 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEE 223 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~ 223 (512)
++|.|.|+ |.+|..+|+.|++.|++|++.+|+++.++...+.+..
T Consensus 5 ~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~ 49 (283)
T 4e12_A 5 TNVTVLGT-GVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEG 49 (283)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHH
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 56777775 7899999999999999999999999988887776544
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=95.43 E-value=0.025 Score=52.55 Aligned_cols=42 Identities=36% Similarity=0.502 Sum_probs=36.7
Q ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHH
Q 010380 179 NVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTE 220 (512)
Q Consensus 179 ~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~e 220 (512)
+++|+||+|.+|.++++.|++.|++|++.+|++++.+...++
T Consensus 2 ~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~ 43 (212)
T 1jay_A 2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAE 43 (212)
T ss_dssp EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHH
T ss_pred eEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 478999999999999999999999999999998877655443
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=95.42 E-value=0.24 Score=49.48 Aligned_cols=117 Identities=23% Similarity=0.253 Sum_probs=72.5
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCC--CEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSG--DRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~G--a~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
....|.|+|+ |.+|..++..|+.+| ..|++.++++++++....++.+..+. .+..+.... |
T Consensus 5 ~~~KI~IIGa-G~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~-------------~~~~~~v~~-~-- 67 (317)
T 3d0o_A 5 KGNKVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPY-------------SPTTVRVKA-G-- 67 (317)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGG-------------SSSCCEEEE-C--
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhh-------------cCCCeEEEe-C--
Confidence 4567899998 999999999999988 48999999988877655665542110 112222222 2
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeec
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD 331 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vS 331 (512)
+.++ +..-|++|..+|... .+ ..+.+ ..+..|.- +.+.+.+.+.+....+.|+++|
T Consensus 68 ~~~a-----------~~~aDvVvi~ag~~~--~~--g~~r~---dl~~~n~~----i~~~i~~~i~~~~p~a~viv~t 123 (317)
T 3d0o_A 68 EYSD-----------CHDADLVVICAGAAQ--KP--GETRL---DLVSKNLK----IFKSIVGEVMASKFDGIFLVAT 123 (317)
T ss_dssp CGGG-----------GTTCSEEEECCCCCC--CT--TCCHH---HHHHHHHH----HHHHHHHHHHHTTCCSEEEECS
T ss_pred CHHH-----------hCCCCEEEECCCCCC--CC--CCcHH---HHHHHHHH----HHHHHHHHHHHhCCCcEEEEec
Confidence 2222 236899999999854 11 23332 23444443 3445555555554567777764
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=95.42 E-value=0.021 Score=56.09 Aligned_cols=41 Identities=37% Similarity=0.398 Sum_probs=38.2
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHH
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTV 218 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~ 218 (512)
+|+++|.|+ ||.|++++..|++.|.+|+++.|+.++++++.
T Consensus 118 ~k~vlvlGa-GGaaraia~~L~~~G~~v~V~nRt~~ka~~la 158 (269)
T 3phh_A 118 YQNALILGA-GGSAKALACELKKQGLQVSVLNRSSRGLDFFQ 158 (269)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCTTHHHHH
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 899999997 99999999999999999999999999887765
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.32 E-value=0.045 Score=56.30 Aligned_cols=80 Identities=15% Similarity=0.152 Sum_probs=54.0
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCC
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCE 254 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd 254 (512)
.|++|+|+|+ |++|...++.+...|+ +|+++++++++++.+ ++ .|.. ..|.++
T Consensus 185 ~g~~VlV~Ga-G~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a-~~--------------------lGa~----~i~~~~ 238 (398)
T 1kol_A 185 PGSTVYVAGA-GPVGLAAAASARLLGAAVVIVGDLNPARLAHA-KA--------------------QGFE----IADLSL 238 (398)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHH-HH--------------------TTCE----EEETTS
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHH-HH--------------------cCCc----EEccCC
Confidence 5789999995 9999999988888999 799999998876543 22 2332 235554
Q ss_pred hhhHHHHHHHHHHHcCCCcccccccccC
Q 010380 255 PADVQKLSNFAVNEFGSIDIWINNAGTN 282 (512)
Q Consensus 255 ~~sv~~~~~~i~~~~g~IDvLInnAG~~ 282 (512)
.+.+.+.+.++.. ...+|++|.++|..
T Consensus 239 ~~~~~~~v~~~t~-g~g~Dvvid~~G~~ 265 (398)
T 1kol_A 239 DTPLHEQIAALLG-EPEVDCAVDAVGFE 265 (398)
T ss_dssp SSCHHHHHHHHHS-SSCEEEEEECCCTT
T ss_pred cchHHHHHHHHhC-CCCCCEEEECCCCc
Confidence 4433332322211 12699999999863
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=95.28 E-value=0.23 Score=50.10 Aligned_cols=118 Identities=14% Similarity=0.099 Sum_probs=73.9
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGD--RVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga--~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
..+.+.|+|+ |.+|..+|..|+..|. +|++.++++++++....++.+.... ....++. ...|..
T Consensus 20 ~~~kV~ViGa-G~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~------------~~~~~i~-~t~d~~ 85 (330)
T 3ldh_A 20 SYNKITVVGC-DAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLF------------LHTAKIV-SGKDYS 85 (330)
T ss_dssp CCCEEEEEST-THHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGG------------SCCSEEE-EESSSC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhc------------ccCCeEE-EcCCHH
Confidence 4578999999 9999999999999996 8999999998888777777653210 0112222 223332
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+ +..-|++|..||... .+ ..+.+ ..+..|.. +.+.+.+.+.+....+.++++|-
T Consensus 86 ~--------------~~daDiVIitaG~p~--kp--G~tR~---dll~~N~~----I~k~i~~~I~k~~P~a~ilvvtN 139 (330)
T 3ldh_A 86 V--------------SAGSKLVVITAGARQ--QE--GESRL---NLVQRNVN----IFKFIIPNIVKHSPDCLKELHPE 139 (330)
T ss_dssp S--------------CSSCSEEEECCSCCC--CS--SCCTT---GGGHHHHH----HHHHHHHHHHHHCTTCEEEECSS
T ss_pred H--------------hCCCCEEEEeCCCCC--CC--CCCHH---HHHHhhHH----HHHHHHHHHHhhCCCceEEeCCC
Confidence 2 236899999999854 22 12221 23334433 33444444444445677777754
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=95.27 E-value=0.12 Score=51.78 Aligned_cols=116 Identities=12% Similarity=0.148 Sum_probs=71.0
Q ss_pred EEEEECCCChHHHHHHHHHHHCCC--EEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChh
Q 010380 179 NVVITGSTRGLGKALAREFLLSGD--RVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPA 256 (512)
Q Consensus 179 ~vLVTGassGIG~aiA~~La~~Ga--~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~ 256 (512)
.+.|+|+ |.+|..+|..|+..|. +|++.++++++++....++.+...- ....+.....| +.+
T Consensus 2 kv~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~-------------~~~~~~v~~~~--~~~ 65 (314)
T 3nep_X 2 KVTVIGA-GNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPI-------------HGFDTRVTGTN--DYG 65 (314)
T ss_dssp EEEEECC-SHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHH-------------HTCCCEEEEES--SSG
T ss_pred EEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccc-------------cCCCcEEEECC--CHH
Confidence 4788996 9999999999999886 8999999998877666666543210 01112222112 222
Q ss_pred hHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 257 DVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 257 sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
.+..-|++|.+||... .+ ..+. ...++.|.- +.+...+.+.+....+.++++|-
T Consensus 66 -----------a~~~aDvVii~ag~~~--kp--G~~R---~dl~~~N~~----i~~~i~~~i~~~~p~a~vivvtN 119 (314)
T 3nep_X 66 -----------PTEDSDVCIITAGLPR--SP--GMSR---DDLLAKNTE----IVGGVTEQFVEGSPDSTIIVVAN 119 (314)
T ss_dssp -----------GGTTCSEEEECCCC-----------C---HHHHHHHHH----HHHHHHHHHHTTCTTCEEEECCS
T ss_pred -----------HhCCCCEEEECCCCCC--CC--CCCH---HHHHHhhHH----HHHHHHHHHHHhCCCcEEEecCC
Confidence 2346899999999753 11 1222 234555543 45556666666656677777754
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.19 E-value=0.022 Score=58.09 Aligned_cols=41 Identities=10% Similarity=0.161 Sum_probs=34.8
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcChhhHHHH
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRSSESVRMT 217 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~~~l~~~ 217 (512)
.|++|+|+|+ |++|...++.+...|+ +|+.+++++++++.+
T Consensus 190 ~g~~VlV~Ga-G~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a 231 (371)
T 1f8f_A 190 PASSFVTWGA-GAVGLSALLAAKVCGASIIIAVDIVESRLELA 231 (371)
T ss_dssp TTCEEEEESC-SHHHHHHHHHHHHHTCSEEEEEESCHHHHHHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCHHHHHHH
Confidence 5789999995 8999999988888899 699999998876543
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=95.16 E-value=0.013 Score=55.67 Aligned_cols=72 Identities=19% Similarity=0.114 Sum_probs=53.1
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChh
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPA 256 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~ 256 (512)
.++++|.|+ |.+|..+++.|.++|+ |++++++++..+.+. ..+.++..|.+|++
T Consensus 9 ~~~viI~G~-G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~------------------------~~~~~i~gd~~~~~ 62 (234)
T 2aef_A 9 SRHVVICGW-SESTLECLRELRGSEV-FVLAEDENVRKKVLR------------------------SGANFVHGDPTRVS 62 (234)
T ss_dssp -CEEEEESC-CHHHHHHHHHSTTSEE-EEEESCGGGHHHHHH------------------------TTCEEEESCTTCHH
T ss_pred CCEEEEECC-ChHHHHHHHHHHhCCe-EEEEECCHHHHHHHh------------------------cCCeEEEcCCCCHH
Confidence 457899997 8999999999999999 999999987654331 12567889999887
Q ss_pred hHHHHHHHHHHHcCCCcccccccc
Q 010380 257 DVQKLSNFAVNEFGSIDIWINNAG 280 (512)
Q Consensus 257 sv~~~~~~i~~~~g~IDvLInnAG 280 (512)
.++++ .....|.+|.+.+
T Consensus 63 ~l~~a------~i~~ad~vi~~~~ 80 (234)
T 2aef_A 63 DLEKA------NVRGARAVIVDLE 80 (234)
T ss_dssp HHHHT------TCTTCSEEEECCS
T ss_pred HHHhc------CcchhcEEEEcCC
Confidence 65543 1235677776543
|
| >3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* | Back alignment and structure |
|---|
Probab=95.13 E-value=0.052 Score=55.05 Aligned_cols=50 Identities=14% Similarity=0.276 Sum_probs=40.6
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcCh-------------------hhHHHHHHHHHHH
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRSS-------------------ESVRMTVTELEEN 224 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~-------------------~~l~~~~~el~~~ 224 (512)
++++++|+|.|+ ||+|.++|+.|+..|. ++.+++++. .+.+.+.+.+.+.
T Consensus 31 kL~~~~VlIvGa-GGlGs~va~~La~aGVg~ItlvD~D~Ve~SNL~RQ~l~~~~diG~~Ka~aaa~~L~~i 100 (340)
T 3rui_A 31 IIKNTKVLLLGA-GTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRI 100 (340)
T ss_dssp HHHTCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCBCCTTSTTTSTTCCGGGTTSBHHHHHHHHHHHH
T ss_pred HHhCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEecCCEeccccccccccCChhhcChHHHHHHHHHHHHh
Confidence 567899999997 7999999999999997 899998763 4566666666654
|
| >1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A | Back alignment and structure |
|---|
Probab=95.03 E-value=0.017 Score=58.55 Aligned_cols=37 Identities=22% Similarity=0.265 Sum_probs=32.1
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChh
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSE 212 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~ 212 (512)
.|++|+|+||+|++|...++.+...|++|+++.++.+
T Consensus 167 ~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~ 203 (357)
T 1zsy_A 167 PGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRP 203 (357)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEECCCS
T ss_pred CCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEecCcc
Confidence 5889999999999999999888888999888876544
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=95.00 E-value=0.016 Score=58.71 Aligned_cols=39 Identities=13% Similarity=0.087 Sum_probs=34.0
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcChhhHH
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRSSESVR 215 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~~~l~ 215 (512)
.|++|+|+|+ |++|...++.+...|+ +|+++++++++++
T Consensus 166 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~ 205 (352)
T 3fpc_A 166 LGDTVCVIGI-GPVGLMSVAGANHLGAGRIFAVGSRKHCCD 205 (352)
T ss_dssp TTCCEEEECC-SHHHHHHHHHHHTTTCSSEEEECCCHHHHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCcEEEEECCCHHHHH
Confidence 5788999985 8999999998888999 8999999887764
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=94.98 E-value=0.01 Score=58.70 Aligned_cols=42 Identities=21% Similarity=0.260 Sum_probs=37.3
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcChhhHH
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRSSESVR 215 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~~~l~ 215 (512)
.++++|+++|+|+ ||+|++++..|++.|+ +|++++|+.++.+
T Consensus 113 ~~l~~k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~~R~~~~a~ 155 (277)
T 3don_A 113 EGIEDAYILILGA-GGASKGIANELYKIVRPTLTVANRTMSRFN 155 (277)
T ss_dssp TTGGGCCEEEECC-SHHHHHHHHHHHTTCCSCCEEECSCGGGGT
T ss_pred CCcCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCHHHHH
Confidence 3567899999997 7999999999999998 8999999987654
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=94.87 E-value=0.039 Score=56.85 Aligned_cols=40 Identities=25% Similarity=0.394 Sum_probs=35.0
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcChhhHHH
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRSSESVRM 216 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~~~l~~ 216 (512)
.|++|+|+|+ |++|...++.+...|+ +|+.+++++++++.
T Consensus 185 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~ 225 (398)
T 2dph_A 185 PGSHVYIAGA-GPVGRCAAAGARLLGAACVIVGDQNPERLKL 225 (398)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEEESCHHHHHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCHHHHHH
Confidence 5789999997 9999999988888899 99999999887653
|
| >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A | Back alignment and structure |
|---|
Probab=94.86 E-value=0.029 Score=57.25 Aligned_cols=82 Identities=23% Similarity=0.373 Sum_probs=60.4
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcCh-------------------hhHHHHHHHHHHHHhhhhhhcC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRSS-------------------ESVRMTVTELEENLKEGMMAAG 233 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~-------------------~~l~~~~~el~~~~~~~~~~~g 233 (512)
++++++|+|.|+ ||+|.++++.|+..|. ++.+++++. .+.+.+.+.+.+..
T Consensus 115 ~L~~~~VlvvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n-------- 185 (353)
T 3h5n_A 115 KLKNAKVVILGC-GGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVIKRELLKRN-------- 185 (353)
T ss_dssp HHHTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHC--------
T ss_pred HHhCCeEEEECC-CHHHHHHHHHHHhCCCCeEEEECCCcCcccccccccCCChHHCCChHHHHHHHHHHHHC--------
Confidence 467788999997 8999999999999997 899999863 35556666665533
Q ss_pred CCCcccccCceEEEEEccCCChhhHHHHHHHHHHHcCCCccccccc
Q 010380 234 GSSKKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNA 279 (512)
Q Consensus 234 ~~~~~~~~g~~v~~v~~Dltd~~sv~~~~~~i~~~~g~IDvLInnA 279 (512)
+..++..+..++++..++. + +...|+||.+.
T Consensus 186 -------p~v~v~~~~~~i~~~~~~~-------~-~~~~DlVvd~~ 216 (353)
T 3h5n_A 186 -------SEISVSEIALNINDYTDLH-------K-VPEADIWVVSA 216 (353)
T ss_dssp -------TTSEEEEEECCCCSGGGGG-------G-SCCCSEEEECC
T ss_pred -------CCCeEEEeecccCchhhhh-------H-hccCCEEEEec
Confidence 2357777888887665322 2 45788888765
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=94.80 E-value=0.2 Score=51.60 Aligned_cols=44 Identities=11% Similarity=0.045 Sum_probs=38.9
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHH
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMT 217 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~ 217 (512)
..+.+++|+|.|+ |.+|..+++.+...|++|++.+|+.++++.+
T Consensus 180 ~~v~~~kV~ViG~-G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~ 223 (381)
T 3p2y_A 180 GTVKPASALVLGV-GVAGLQALATAKRLGAKTTGYDVRPEVAEQV 223 (381)
T ss_dssp CEECCCEEEEESC-SHHHHHHHHHHHHHTCEEEEECSSGGGHHHH
T ss_pred CCcCCCEEEEECc-hHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 3457899999998 7999999999999999999999999877654
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=94.75 E-value=0.25 Score=49.75 Aligned_cols=118 Identities=18% Similarity=0.234 Sum_probs=72.4
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 175 AGPRNVVITGSTRGLGKALAREFLLSGD--RVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 175 l~gk~vLVTGassGIG~aiA~~La~~Ga--~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
-+...|.|+|+ |.+|..++..|+..+. +|++.++++++++....++.+..+ ....+.+.. |
T Consensus 7 ~~~~KI~IiGa-G~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~--------------~~~~~~i~~-~- 69 (326)
T 2zqz_A 7 KDHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALP--------------FTSPKKIYS-A- 69 (326)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGG--------------GSCCCEEEE-C-
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHH--------------hcCCeEEEE-C-
Confidence 34467999999 9999999999998885 899999999888776666654211 112222222 2
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+.++ +..-|++|..+|... .+ ..+.+ ..+..|.-- .+.+.+.+.+....+.|+++|-
T Consensus 70 -~~~a-----------~~~aDvVii~ag~~~--k~--g~~R~---dl~~~n~~i----~~~i~~~i~~~~p~a~iiv~tN 126 (326)
T 2zqz_A 70 -EYSD-----------AKDADLVVITAGAPQ--KP--GETRL---DLVNKNLKI----LKSIVDPIVDSGFNGIFLVAAN 126 (326)
T ss_dssp -CGGG-----------GGGCSEEEECCCCC---------CHH---HHHHHHHHH----HHHHHHHHHHHTCCSEEEECSS
T ss_pred -CHHH-----------hCCCCEEEEcCCCCC--CC--CCCHH---HHHHHHHHH----HHHHHHHHHHHCCCeEEEEeCC
Confidence 2222 236799999999754 11 23333 234445443 4444455544445678888753
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=94.71 E-value=0.28 Score=48.96 Aligned_cols=114 Identities=17% Similarity=0.149 Sum_probs=71.4
Q ss_pred EEEEECCCChHHHHHHHHHHHCC--CEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChh
Q 010380 179 NVVITGSTRGLGKALAREFLLSG--DRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPA 256 (512)
Q Consensus 179 ~vLVTGassGIG~aiA~~La~~G--a~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~ 256 (512)
.|.|+|+ |.+|..++..|+..+ .+|++.++++++++....++.+..+ ....+.+.. | +.+
T Consensus 2 KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~--------------~~~~~~v~~-~--~~~ 63 (310)
T 2xxj_A 2 KVGIVGS-GMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATP--------------FAHPVWVWA-G--SYG 63 (310)
T ss_dssp EEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGG--------------GSCCCEEEE-C--CGG
T ss_pred EEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHh--------------hcCCeEEEE-C--CHH
Confidence 5789998 999999999999988 5899999998888766666654211 011222222 2 333
Q ss_pred hHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 257 DVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 257 sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+ +..-|++|..+|... .+ ..+.++ .+..|.-- .+.+.+.+.+....+.|+++|-
T Consensus 64 a-----------~~~aD~Vii~ag~~~--~~--g~~r~d---l~~~n~~i----~~~i~~~i~~~~p~a~iiv~tN 117 (310)
T 2xxj_A 64 D-----------LEGARAVVLAAGVAQ--RP--GETRLQ---LLDRNAQV----FAQVVPRVLEAAPEAVLLVATN 117 (310)
T ss_dssp G-----------GTTEEEEEECCCCCC--CT--TCCHHH---HHHHHHHH----HHHHHHHHHHHCTTCEEEECSS
T ss_pred H-----------hCCCCEEEECCCCCC--CC--CcCHHH---HHHhhHHH----HHHHHHHHHHHCCCcEEEEecC
Confidence 2 236899999999754 21 234332 34444443 3444455544445677887753
|
| >1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=94.69 E-value=0.055 Score=55.47 Aligned_cols=46 Identities=24% Similarity=0.343 Sum_probs=40.2
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHH
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTE 220 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~e 220 (512)
++.||+++|.|. |.+|..+|+.|.+.|++|++.+++.+++++..++
T Consensus 170 ~L~GktV~V~G~-G~VG~~~A~~L~~~GakVvv~D~~~~~l~~~a~~ 215 (364)
T 1leh_A 170 SLEGLAVSVQGL-GNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAE 215 (364)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHH
T ss_pred CCCcCEEEEECc-hHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHH
Confidence 689999999997 8899999999999999999999998776655443
|
| >4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A | Back alignment and structure |
|---|
Probab=94.64 E-value=0.063 Score=58.40 Aligned_cols=91 Identities=12% Similarity=0.154 Sum_probs=59.7
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcCh-------------------hhHHHHHHHHHHHHhhhhhhcC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRSS-------------------ESVRMTVTELEENLKEGMMAAG 233 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~-------------------~~l~~~~~el~~~~~~~~~~~g 233 (512)
++++++|+|.|+ ||+|.++|+.|+..|. ++.+++.+. .+.+.+.+.+.+..+
T Consensus 323 kL~~arVLIVGa-GGLGs~vA~~La~aGVG~ItLvD~D~Ve~SNL~RQ~L~~~~dIG~~KAeaaa~~L~~iNP------- 394 (615)
T 4gsl_A 323 IIKNTKVLLLGA-GTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFP------- 394 (615)
T ss_dssp HHHTCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCBCCTTGGGTSTTCCGGGTTSBHHHHHHHHHHHHCT-------
T ss_pred HHhCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCCCcccCcccccCCChhhcChHHHHHHHHHHHhhCC-------
Confidence 567889999997 6999999999999997 899998864 466667777766432
Q ss_pred CCCcccccCceEEEEEccC-------CChhhHHHHHHHHHHHcCCCcccccccc
Q 010380 234 GSSKKNLVHAKVAGIACDV-------CEPADVQKLSNFAVNEFGSIDIWINNAG 280 (512)
Q Consensus 234 ~~~~~~~~g~~v~~v~~Dl-------td~~sv~~~~~~i~~~~g~IDvLInnAG 280 (512)
..++..+..++ ++++...--.+.+.+.+...|+||++..
T Consensus 395 --------~V~v~~~~~~Ipm~gh~v~~e~~~~l~~~~l~~ll~~~DlVvd~tD 440 (615)
T 4gsl_A 395 --------LMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVD 440 (615)
T ss_dssp --------TCEEEEECCCCCCTTCCCSCHHHHHHHHHHHHHHHHHCSEEEECCS
T ss_pred --------CcEEEEeeccccccCccccchhhhcCCHHHHHHHhhcCCEEEecCC
Confidence 35666666554 2221111111122222345788888764
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=94.63 E-value=0.038 Score=54.90 Aligned_cols=40 Identities=25% Similarity=0.253 Sum_probs=34.9
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHH
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMT 217 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~ 217 (512)
.|++|+|+|+ |++|...++.+...|++|+.++ ++++.+.+
T Consensus 142 ~g~~VlV~Ga-G~vG~~a~qlak~~Ga~Vi~~~-~~~~~~~~ 181 (315)
T 3goh_A 142 KQREVLIVGF-GAVNNLLTQMLNNAGYVVDLVS-ASLSQALA 181 (315)
T ss_dssp SCCEEEEECC-SHHHHHHHHHHHHHTCEEEEEC-SSCCHHHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEE-ChhhHHHH
Confidence 5899999999 9999999998888999999999 77776543
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=94.48 E-value=0.041 Score=56.67 Aligned_cols=43 Identities=14% Similarity=0.108 Sum_probs=38.2
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHH
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMT 217 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~ 217 (512)
.+.+++|+|+|+ |++|+.+++.+...|++|++.+|++++++.+
T Consensus 169 ~l~g~~V~ViGa-G~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~ 211 (384)
T 1l7d_A 169 TVPPARVLVFGV-GVAGLQAIATAKRLGAVVMATDVRAATKEQV 211 (384)
T ss_dssp EECCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCSTTHHHH
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 568999999996 8999999999999999999999998876543
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=94.39 E-value=0.33 Score=48.14 Aligned_cols=116 Identities=12% Similarity=0.153 Sum_probs=74.1
Q ss_pred EEEEECCCChHHHHHHHHHHHCCC--EEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChh
Q 010380 179 NVVITGSTRGLGKALAREFLLSGD--RVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPA 256 (512)
Q Consensus 179 ~vLVTGassGIG~aiA~~La~~Ga--~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~ 256 (512)
.|.|+|+ |++|..+|..|+.+|. ++++.+.++++++....+|...... .+........ .|.+
T Consensus 2 KV~IiGa-G~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~-------------~~~~~~i~~~--~d~~ 65 (294)
T 2x0j_A 2 KLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAG-------------IDKYPKIVGG--ADYS 65 (294)
T ss_dssp EEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGG-------------GTCCCEEEEE--SCGG
T ss_pred EEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhccccc-------------CCCCCeEecC--CCHH
Confidence 3678895 9999999999998883 7999999988877777777653211 1111222221 1232
Q ss_pred hHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 257 DVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 257 sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+ +..-|++|..||... + ..++.++ .++.|.. +.+.+.+.+.+....+.++.+|-
T Consensus 66 ~-----------~~~aDvVvitAG~pr--k--pGmtR~d---Ll~~Na~----I~~~i~~~i~~~~p~aivlvvsN 119 (294)
T 2x0j_A 66 L-----------LKGSEIIVVTAGLAR--K--PGMTRLD---LAHKNAG----IIKDIAKKIVENAPESKILVVTN 119 (294)
T ss_dssp G-----------GTTCSEEEECCCCCC--C--SSSCHHH---HHHHHHH----HHHHHHHHHHTTSTTCEEEECSS
T ss_pred H-----------hCCCCEEEEecCCCC--C--CCCchHH---HHHHHHH----HHHHHHHHHHhcCCceEEEEecC
Confidence 2 235799999999854 2 2345443 4566654 55666666666656677777754
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=94.34 E-value=0.22 Score=50.18 Aligned_cols=46 Identities=17% Similarity=0.145 Sum_probs=39.2
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcChhhHHHHHHHHHH
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSGD-RVVVASRSSESVRMTVTELEE 223 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~~~l~~~~~el~~ 223 (512)
..+|.|.|| |.+|.++|..|+..|. +|++.++++++++....++..
T Consensus 9 ~~kI~VIGa-G~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~ 55 (331)
T 1pzg_A 9 RKKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSH 55 (331)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHH
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHh
Confidence 457899998 9999999999999997 999999999888775555544
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=94.32 E-value=0.053 Score=53.92 Aligned_cols=40 Identities=23% Similarity=0.284 Sum_probs=35.9
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHH
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMT 217 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~ 217 (512)
++ ++|+||+|++|...++.+...|++|+.+++++++++.+
T Consensus 148 g~-VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~~~~~ 187 (324)
T 3nx4_A 148 GE-VVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYL 187 (324)
T ss_dssp CC-EEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHH
T ss_pred Ce-EEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 45 99999999999999999999999999999998887544
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=94.31 E-value=0.063 Score=53.99 Aligned_cols=40 Identities=18% Similarity=0.287 Sum_probs=34.1
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHC-CCEEEEEEcChhhHHH
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLS-GDRVVVASRSSESVRM 216 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~-Ga~Vvl~~R~~~~l~~ 216 (512)
.|++++|+|+ |++|...++.+... |++|+.+++++++++.
T Consensus 171 ~g~~vlv~Ga-G~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~ 211 (345)
T 3jv7_A 171 PGSTAVVIGV-GGLGHVGIQILRAVSAARVIAVDLDDDRLAL 211 (345)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESCHHHHHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCHHHHHH
Confidence 5889999998 99999988877666 6899999999887654
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=94.26 E-value=0.033 Score=55.62 Aligned_cols=39 Identities=26% Similarity=0.370 Sum_probs=35.0
Q ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHH
Q 010380 179 NVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMT 217 (512)
Q Consensus 179 ~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~ 217 (512)
+++|+||+||+|...++.+...|++|+++++++++++.+
T Consensus 153 ~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~ 191 (330)
T 1tt7_A 153 SVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYL 191 (330)
T ss_dssp CEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHH
T ss_pred eEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 699999999999999999989999999999998776543
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=94.18 E-value=0.3 Score=48.86 Aligned_cols=115 Identities=19% Similarity=0.239 Sum_probs=70.8
Q ss_pred CEEEEECCCChHHHHHHHHHHHCCC--EEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCCh
Q 010380 178 RNVVITGSTRGLGKALAREFLLSGD--RVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEP 255 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~Ga--~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~ 255 (512)
..|.|+|+ |.+|..++..|+..+. +|++.++++++++....++.+..+ ....+.+.. | +.
T Consensus 6 ~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~--------------~~~~~~v~~-~--~~ 67 (318)
T 1ez4_A 6 QKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQA--------------FTAPKKIYS-G--EY 67 (318)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGG--------------GSCCCEEEE-C--CG
T ss_pred CEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHH--------------hcCCeEEEE-C--CH
Confidence 57899998 9999999999998885 899999999888876666654211 112222222 2 22
Q ss_pred hhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 256 ADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 256 ~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
++ +..-|++|..+|... .+ ..+.+ ..+..|. -+.+.+.+.+.+....+.|+++|-
T Consensus 68 ~a-----------~~~aDvVii~ag~~~--~~--g~~R~---dl~~~n~----~i~~~i~~~i~~~~p~a~iiv~tN 122 (318)
T 1ez4_A 68 SD-----------CKDADLVVITAGAPQ--KP--GESRL---DLVNKNL----NILSSIVKPVVDSGFDGIFLVAAN 122 (318)
T ss_dssp GG-----------GTTCSEEEECCCC-----------------CHHHHH----HHHHHHHHHHHHTTCCSEEEECSS
T ss_pred HH-----------hCCCCEEEECCCCCC--CC--CCCHH---HHHHHHH----HHHHHHHHHHHHhCCCeEEEEeCC
Confidence 22 346899999999754 11 11211 2233333 345555666666656778888753
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.13 E-value=0.12 Score=53.61 Aligned_cols=43 Identities=9% Similarity=0.039 Sum_probs=38.1
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHH
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMT 217 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~ 217 (512)
.+.+.+|+|.|+ |.+|..+++.+...|++|++.++++++++.+
T Consensus 187 ~v~~~kV~ViG~-G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~ 229 (405)
T 4dio_A 187 TVPAAKIFVMGA-GVAGLQAIATARRLGAVVSATDVRPAAKEQV 229 (405)
T ss_dssp EECCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSTTHHHHH
T ss_pred CcCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence 457889999998 7999999999999999999999998876544
|
| >1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=94.04 E-value=0.22 Score=52.73 Aligned_cols=46 Identities=13% Similarity=0.106 Sum_probs=36.1
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHC-----CCEEEEEEcChhhHHHHH
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLS-----GDRVVVASRSSESVRMTV 218 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~-----Ga~Vvl~~R~~~~l~~~~ 218 (512)
|.++.+.|.|.||++..|.++|..|+++ +.+|++.++++++++...
T Consensus 24 m~m~~~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~~ 74 (472)
T 1u8x_X 24 MKKKSFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIA 74 (472)
T ss_dssp --CCCEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHH
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHH
Confidence 3344557888898888888899999988 668999999998877754
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=94.03 E-value=0.072 Score=55.48 Aligned_cols=39 Identities=26% Similarity=0.409 Sum_probs=34.4
Q ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHH
Q 010380 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMT 217 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~ 217 (512)
.+|+|.|. |-+|..+++.|.++|..|++++++++..+.+
T Consensus 5 ~~viIiG~-Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~ 43 (413)
T 3l9w_A 5 MRVIIAGF-GRFGQITGRLLLSSGVKMVVLDHDPDHIETL 43 (413)
T ss_dssp CSEEEECC-SHHHHHHHHHHHHTTCCEEEEECCHHHHHHH
T ss_pred CeEEEECC-CHHHHHHHHHHHHCCCCEEEEECCHHHHHHH
Confidence 45889997 7899999999999999999999999877654
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=93.99 E-value=0.092 Score=50.76 Aligned_cols=77 Identities=13% Similarity=0.255 Sum_probs=55.8
Q ss_pred EEEEECCCChHHHHHHHHHHHC-CCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhh
Q 010380 179 NVVITGSTRGLGKALAREFLLS-GDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPAD 257 (512)
Q Consensus 179 ~vLVTGassGIG~aiA~~La~~-Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~s 257 (512)
.|.|.|++|.+|+.+++.+.+. |++|+.+....+.+++... . ... +..|++.++.
T Consensus 2 kV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~~dl~~~~~---~------------------~~D---vvIDfT~p~a 57 (245)
T 1p9l_A 2 RVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAGDPLSLLTD---G------------------NTE---VVIDFTHPDV 57 (245)
T ss_dssp EEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTTCCTHHHHH---T------------------TCC---EEEECSCTTT
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccCCCHHHHhc---c------------------CCc---EEEEccChHH
Confidence 4799999999999999999876 8888765544333332211 0 111 6779999999
Q ss_pred HHHHHHHHHHHcCCCccccccccc
Q 010380 258 VQKLSNFAVNEFGSIDIWINNAGT 281 (512)
Q Consensus 258 v~~~~~~i~~~~g~IDvLInnAG~ 281 (512)
+...+..+.+. ++++||-..|.
T Consensus 58 ~~~~~~~a~~~--g~~~VigTTG~ 79 (245)
T 1p9l_A 58 VMGNLEFLIDN--GIHAVVGTTGF 79 (245)
T ss_dssp HHHHHHHHHHT--TCEEEECCCCC
T ss_pred HHHHHHHHHHc--CCCEEEcCCCC
Confidence 99888877665 68888877764
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=93.98 E-value=0.061 Score=53.96 Aligned_cols=40 Identities=20% Similarity=0.234 Sum_probs=32.6
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHHC-CCEEEEEEcChhhHH
Q 010380 175 AGPRNVVITGSTRGLGKALAREFLLS-GDRVVVASRSSESVR 215 (512)
Q Consensus 175 l~gk~vLVTGassGIG~aiA~~La~~-Ga~Vvl~~R~~~~l~ 215 (512)
..|++++|+|+ +|+|...+..+... |++|+.+++++++++
T Consensus 162 ~~g~~VlV~Ga-G~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~ 202 (348)
T 4eez_A 162 KPGDWQVIFGA-GGLGNLAIQYAKNVFGAKVIAVDINQDKLN 202 (348)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTSCCEEEEEESCHHHHH
T ss_pred CCCCEEEEEcC-CCccHHHHHHHHHhCCCEEEEEECcHHHhh
Confidence 35889999987 78888888777765 689999999988764
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=93.75 E-value=0.33 Score=48.26 Aligned_cols=45 Identities=16% Similarity=0.127 Sum_probs=37.7
Q ss_pred CEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcChhhHHHHHHHHHH
Q 010380 178 RNVVITGSTRGLGKALAREFLLSGD-RVVVASRSSESVRMTVTELEE 223 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~~~l~~~~~el~~ 223 (512)
++|.|+|+ |.+|..++..|+..|. +|++.++++++++....++.+
T Consensus 3 ~kI~VIGa-G~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~ 48 (309)
T 1ur5_A 3 KKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYE 48 (309)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHT
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHH
Confidence 46899998 9999999999999996 999999998888765555543
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=93.73 E-value=0.14 Score=51.34 Aligned_cols=115 Identities=19% Similarity=0.228 Sum_probs=64.9
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCC
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSGD--RVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCE 254 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~Ga--~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd 254 (512)
...|.|+|+ |.+|..++..|+..|. +|++.+.++++++....++.+.. . ....+.... .+
T Consensus 7 ~~KI~IiGa-G~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~-------------~-~~~~~~i~~---~~ 68 (318)
T 1y6j_A 7 RSKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGL-------------P-FMGQMSLYA---GD 68 (318)
T ss_dssp CCCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSC-------------C-CTTCEEEC-----C
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhH-------------H-hcCCeEEEE---CC
Confidence 356888898 9999999999999996 89999999877665444443210 0 001222111 12
Q ss_pred hhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeec
Q 010380 255 PADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD 331 (512)
Q Consensus 255 ~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vS 331 (512)
.+ .+..-|++|..+|... .+ ..+.+ ..+..|+--...+.+.+.++ ...+.|+++|
T Consensus 69 ~~-----------a~~~aDvVii~~g~p~--k~--g~~r~---dl~~~n~~i~~~i~~~i~~~----~p~a~viv~t 123 (318)
T 1y6j_A 69 YS-----------DVKDCDVIVVTAGANR--KP--GETRL---DLAKKNVMIAKEVTQNIMKY----YNHGVILVVS 123 (318)
T ss_dssp GG-----------GGTTCSEEEECCCC----------CHH---HHHHHHHHHHHHHHHHHHHH----CCSCEEEECS
T ss_pred HH-----------HhCCCCEEEEcCCCCC--CC--CcCHH---HHHHhhHHHHHHHHHHHHHh----CCCcEEEEec
Confidence 22 2346899999999743 11 22322 34556655554554444443 3456777654
|
| >1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* | Back alignment and structure |
|---|
Probab=93.55 E-value=0.0099 Score=60.77 Aligned_cols=39 Identities=23% Similarity=0.329 Sum_probs=35.1
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhh
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSES 213 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~ 213 (512)
++.||++.|.| .|.+|..+|+.|.+.|++|++.+++.++
T Consensus 172 ~L~GktV~I~G-~GnVG~~~A~~l~~~GakVvvsD~~~~~ 210 (355)
T 1c1d_A 172 SLDGLTVLVQG-LGAVGGSLASLAAEAGAQLLVADTDTER 210 (355)
T ss_dssp CSTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred CCCCCEEEEEC-cCHHHHHHHHHHHHCCCEEEEEeCCccH
Confidence 68999999997 5899999999999999999988887654
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=93.54 E-value=0.76 Score=45.81 Aligned_cols=46 Identities=13% Similarity=0.209 Sum_probs=37.6
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEEcChhhHHHHHHHHHH
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSGD--RVVVASRSSESVRMTVTELEE 223 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~Ga--~Vvl~~R~~~~l~~~~~el~~ 223 (512)
.++|.|+|+ |.+|..++..|+..|. +|++.++++++++....++.+
T Consensus 6 ~~kI~IIGa-G~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~ 53 (316)
T 1ldn_A 6 GARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNH 53 (316)
T ss_dssp SCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHH
T ss_pred CCEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHH
Confidence 367899998 9999999999998884 899999998766655555544
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=93.50 E-value=0.081 Score=52.24 Aligned_cols=44 Identities=20% Similarity=0.351 Sum_probs=39.3
Q ss_pred cCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHH
Q 010380 172 HCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVR 215 (512)
Q Consensus 172 ~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~ 215 (512)
..++.||+++|.|+++-+|+.+|..|+..|++|.++.|+...++
T Consensus 155 ~i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t~~L~ 198 (285)
T 3p2o_A 155 EIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKTKDLS 198 (285)
T ss_dssp TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSCHH
T ss_pred CCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCchhHH
Confidence 35789999999999999999999999999999999988766554
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=93.49 E-value=0.5 Score=50.16 Aligned_cols=48 Identities=21% Similarity=0.367 Sum_probs=39.7
Q ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHh
Q 010380 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLK 226 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~ 226 (512)
++|.|.|+ |-+|..+|..|++.|++|++.+++++.++...+.+.+.+.
T Consensus 6 ~kVgVIGa-G~MG~~IA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~ 53 (483)
T 3mog_A 6 QTVAVIGS-GTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLN 53 (483)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHH
T ss_pred CEEEEECc-CHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHHHH
Confidence 44666665 8999999999999999999999999999888777655443
|
| >2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* | Back alignment and structure |
|---|
Probab=93.46 E-value=0.11 Score=50.24 Aligned_cols=46 Identities=22% Similarity=0.235 Sum_probs=38.9
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHH
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTE 220 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~e 220 (512)
.++++ +++|.|+ |++|+++++.|.+.|++|++++|+.++.+++.++
T Consensus 113 ~~l~~-~v~iiG~-G~~g~~~a~~l~~~g~~v~v~~r~~~~~~~l~~~ 158 (263)
T 2d5c_A 113 IPLKG-PALVLGA-GGAGRAVAFALREAGLEVWVWNRTPQRALALAEE 158 (263)
T ss_dssp CCCCS-CEEEECC-SHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHH
T ss_pred CCCCC-eEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence 36778 8999996 7899999999999999999999998876655443
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=93.43 E-value=0.14 Score=50.58 Aligned_cols=42 Identities=29% Similarity=0.353 Sum_probs=37.7
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHH
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVR 215 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~ 215 (512)
..+.+++++|.|+ |+||+++|+.|...|++|++.+|+.++.+
T Consensus 153 ~~l~g~~v~IiG~-G~iG~~~a~~l~~~G~~V~~~d~~~~~~~ 194 (300)
T 2rir_A 153 YTIHGSQVAVLGL-GRTGMTIARTFAALGANVKVGARSSAHLA 194 (300)
T ss_dssp SCSTTSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSHHHHH
T ss_pred CCCCCCEEEEEcc-cHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence 4688999999996 89999999999999999999999986543
|
| >3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A | Back alignment and structure |
|---|
Probab=93.43 E-value=0.13 Score=55.72 Aligned_cols=50 Identities=14% Similarity=0.266 Sum_probs=40.8
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcC-------------------hhhHHHHHHHHHHH
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRS-------------------SESVRMTVTELEEN 224 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~-------------------~~~l~~~~~el~~~ 224 (512)
++++++|+|.|+ ||+|.++|+.|+..|. ++.+++.+ ..+++.+.+.+.+.
T Consensus 324 kL~~~kVLIVGa-GGLGs~va~~La~aGVG~ItLvD~D~Ve~SNL~RQ~L~~~~DvG~~KAeaaa~~L~~i 393 (598)
T 3vh1_A 324 IIKNTKVLLLGA-GTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRI 393 (598)
T ss_dssp HHHTCEEEEECC-SHHHHHHHHHHHTTTCCEEEEECCSBCCTTSTTTSTTCCSTTCSSBHHHHHHHHHHHH
T ss_pred HHhCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCcccccccccccccchhhcCcHHHHHHHHHHHhH
Confidence 567889999996 6999999999999997 89999665 25677777777664
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=93.41 E-value=0.051 Score=53.24 Aligned_cols=43 Identities=16% Similarity=0.353 Sum_probs=37.4
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHH
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMT 217 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~ 217 (512)
++.+++++|.|+ |++|+++++.|++.|++|++.+|+.++++++
T Consensus 126 ~~~~~~v~iiGa-G~~g~aia~~L~~~g~~V~v~~r~~~~~~~l 168 (275)
T 2hk9_A 126 EVKEKSILVLGA-GGASRAVIYALVKEGAKVFLWNRTKEKAIKL 168 (275)
T ss_dssp TGGGSEEEEECC-SHHHHHHHHHHHHHTCEEEEECSSHHHHHHH
T ss_pred CcCCCEEEEECc-hHHHHHHHHHHHHcCCEEEEEECCHHHHHHH
Confidence 567889999996 7999999999999999999999998766543
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=93.33 E-value=0.44 Score=47.40 Aligned_cols=115 Identities=19% Similarity=0.281 Sum_probs=69.7
Q ss_pred EEEECCCChHHHHHHHHHHHCCC-EEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhhH
Q 010380 180 VVITGSTRGLGKALAREFLLSGD-RVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPADV 258 (512)
Q Consensus 180 vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~sv 258 (512)
|.|+|| |.+|..++..|+..|. +|++.++++++++....++.+..... ....++... +|.++
T Consensus 2 I~IiGa-G~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~~~~~~~-----------~~~~~i~~t----~d~~a- 64 (308)
T 2d4a_B 2 ITILGA-GKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAEL-----------GVDIRISGS----NSYED- 64 (308)
T ss_dssp EEEECC-SHHHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHHHHHHHHHH-----------TCCCCEEEE----SCGGG-
T ss_pred EEEECc-CHHHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHHHHHhhhhc-----------CCCeEEEEC----CCHHH-
Confidence 678998 9999999999998887 79999999988876666665421100 011223221 22221
Q ss_pred HHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 259 QKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 259 ~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+..-|++|..+|... .+ ..+.++ .+..|.- +.+.+.+.+.+....+.++++|-
T Consensus 65 ----------~~~aD~Vi~~ag~~~--k~--G~~r~d---l~~~n~~----i~~~i~~~i~~~~p~a~iiv~tN 117 (308)
T 2d4a_B 65 ----------MRGSDIVLVTAGIGR--KP--GMTREQ---LLEANAN----TMADLAEKIKAYAKDAIVVITTN 117 (308)
T ss_dssp ----------GTTCSEEEECCSCCC--CS--SCCTHH---HHHHHHH----HHHHHHHHHHHHCTTCEEEECCS
T ss_pred ----------hCCCCEEEEeCCCCC--CC--CCcHHH---HHHHHHH----HHHHHHHHHHHHCCCeEEEEeCC
Confidence 236899999999854 22 223332 2333433 44555555554335667777743
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=93.32 E-value=0.37 Score=48.13 Aligned_cols=44 Identities=18% Similarity=0.246 Sum_probs=37.2
Q ss_pred EEEEECCCChHHHHHHHHHHHCCC--EEEEEEcChhhHHHHHHHHHH
Q 010380 179 NVVITGSTRGLGKALAREFLLSGD--RVVVASRSSESVRMTVTELEE 223 (512)
Q Consensus 179 ~vLVTGassGIG~aiA~~La~~Ga--~Vvl~~R~~~~l~~~~~el~~ 223 (512)
++.|.|+ |.+|.+++..|++.|. +|++.++++++++....++..
T Consensus 2 kI~VIGa-G~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~ 47 (319)
T 1a5z_A 2 KIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIH 47 (319)
T ss_dssp EEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHH
T ss_pred EEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHh
Confidence 5788998 9999999999999998 999999998887765555543
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=93.20 E-value=0.32 Score=47.58 Aligned_cols=92 Identities=14% Similarity=0.212 Sum_probs=58.4
Q ss_pred CEEEEECCCChHHHHHHHHHHHCCC---EEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCC
Q 010380 178 RNVVITGSTRGLGKALAREFLLSGD---RVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCE 254 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~Ga---~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd 254 (512)
+++.|.|+ |-+|.++++.|++.|+ +|++.+|++++++.+.+++.- .. ...........++.++.+ .
T Consensus 4 ~~I~iIG~-G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~gi------~~-~~~~~~~~~~aDvVilav---~ 72 (280)
T 3tri_A 4 SNITFIGG-GNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKCGV------HT-TQDNRQGALNADVVVLAV---K 72 (280)
T ss_dssp SCEEEESC-SHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHTTCC------EE-ESCHHHHHSSCSEEEECS---C
T ss_pred CEEEEEcc-cHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHcCC------EE-eCChHHHHhcCCeEEEEe---C
Confidence 55778887 8999999999999998 899999999887665543100 00 000000112345555554 4
Q ss_pred hhhHHHHHHHHHHH-cCCCcccccccc
Q 010380 255 PADVQKLSNFAVNE-FGSIDIWINNAG 280 (512)
Q Consensus 255 ~~sv~~~~~~i~~~-~g~IDvLInnAG 280 (512)
++.++.+++++... ..+=.++|++++
T Consensus 73 p~~~~~vl~~l~~~~l~~~~iiiS~~a 99 (280)
T 3tri_A 73 PHQIKMVCEELKDILSETKILVISLAV 99 (280)
T ss_dssp GGGHHHHHHHHHHHHHTTTCEEEECCT
T ss_pred HHHHHHHHHHHHhhccCCCeEEEEecC
Confidence 57788888887665 433236776654
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=93.17 E-value=0.62 Score=46.66 Aligned_cols=45 Identities=16% Similarity=0.158 Sum_probs=38.5
Q ss_pred CEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcChhhHHHHHHHHHH
Q 010380 178 RNVVITGSTRGLGKALAREFLLSGD-RVVVASRSSESVRMTVTELEE 223 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~~~l~~~~~el~~ 223 (512)
++|.|.|| |.+|..+|..|+..|. +|++.++++++++....++..
T Consensus 5 ~kI~VIGa-G~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~ 50 (322)
T 1t2d_A 5 AKIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSH 50 (322)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHT
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHh
Confidence 46889998 9999999999999997 999999999888766666544
|
| >1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=93.10 E-value=0.4 Score=50.84 Aligned_cols=45 Identities=16% Similarity=0.194 Sum_probs=37.2
Q ss_pred CCEEEEECCCC-hHHHHHHHHHHHC----CCEEEEEEcChhhHHHHHHHH
Q 010380 177 PRNVVITGSTR-GLGKALAREFLLS----GDRVVVASRSSESVRMTVTEL 221 (512)
Q Consensus 177 gk~vLVTGass-GIG~aiA~~La~~----Ga~Vvl~~R~~~~l~~~~~el 221 (512)
...|.|.||++ |.|.++|..|++. |.+|++.++++++++...+..
T Consensus 3 ~~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~~~~~~ 52 (480)
T 1obb_A 3 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIA 52 (480)
T ss_dssp CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHHHHHHH
Confidence 35688999999 9999999999864 789999999999887755444
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=93.00 E-value=0.6 Score=46.65 Aligned_cols=115 Identities=15% Similarity=0.163 Sum_probs=67.8
Q ss_pred EEEEECCCChHHHHHHHHHHHC-C--CEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCCh
Q 010380 179 NVVITGSTRGLGKALAREFLLS-G--DRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEP 255 (512)
Q Consensus 179 ~vLVTGassGIG~aiA~~La~~-G--a~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~ 255 (512)
.|.|+||+|.+|.+++..|+.+ + .+|+++++++ +++....++... ....++..+.. -.+.
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~-~~~G~a~Dl~~~---------------~~~~~v~~~~~-~~~~ 64 (312)
T 3hhp_A 2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVAVDLSHI---------------PTAVKIKGFSG-EDAT 64 (312)
T ss_dssp EEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSST-THHHHHHHHHTS---------------CSSEEEEEECS-SCCH
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCC-CchhHHHHhhCC---------------CCCceEEEecC-CCcH
Confidence 4789999999999999999876 5 4799999987 444334444320 01122322211 0111
Q ss_pred hhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 256 ADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 256 ~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+ .+...|++|..||... .+ .++. ...++.|..-...+.+.+ .+....+.++++|-
T Consensus 65 ~-----------~~~~aDivii~ag~~r--kp--G~~R---~dll~~N~~I~~~i~~~i----~~~~p~a~vlvvtN 119 (312)
T 3hhp_A 65 P-----------ALEGADVVLISAGVAR--KP--GMDR---SDLFNVNAGIVKNLVQQV----AKTCPKACIGIITN 119 (312)
T ss_dssp H-----------HHTTCSEEEECCSCSC--CT--TCCH---HHHHHHHHHHHHHHHHHH----HHHCTTSEEEECSS
T ss_pred H-----------HhCCCCEEEEeCCCCC--CC--CCCH---HHHHHHHHHHHHHHHHHH----HHHCCCcEEEEecC
Confidence 1 2236899999999754 21 2333 445666665444444444 33334567777753
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=92.99 E-value=0.19 Score=49.56 Aligned_cols=42 Identities=29% Similarity=0.412 Sum_probs=37.5
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHH
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVR 215 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~ 215 (512)
.++.||+++|.|+ |+||+++|+.|...|++|++.+|+.++.+
T Consensus 151 ~~l~g~~v~IiG~-G~iG~~~a~~l~~~G~~V~~~dr~~~~~~ 192 (293)
T 3d4o_A 151 FTIHGANVAVLGL-GRVGMSVARKFAALGAKVKVGARESDLLA 192 (293)
T ss_dssp SCSTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSHHHHH
T ss_pred CCCCCCEEEEEee-CHHHHHHHHHHHhCCCEEEEEECCHHHHH
Confidence 4688999999995 89999999999999999999999986643
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=92.95 E-value=0.65 Score=46.17 Aligned_cols=44 Identities=16% Similarity=0.151 Sum_probs=36.7
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcChhhHHHHHHHH
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSGD-RVVVASRSSESVRMTVTEL 221 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~~~l~~~~~el 221 (512)
.++|.|.|+ |.+|.++|..|++.|. +|++.+++++.++....++
T Consensus 4 ~~kI~VIGa-G~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l 48 (317)
T 2ewd_A 4 RRKIAVIGS-GQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDI 48 (317)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHH
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHH
Confidence 357889998 8999999999999998 9999999988777543333
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=92.95 E-value=0.93 Score=45.44 Aligned_cols=45 Identities=13% Similarity=0.123 Sum_probs=38.3
Q ss_pred CEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcChhhHHHHHHHHHH
Q 010380 178 RNVVITGSTRGLGKALAREFLLSGD-RVVVASRSSESVRMTVTELEE 223 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~~~l~~~~~el~~ 223 (512)
+.|.|.|| |.+|..+|..|+..|. +|++.+++++.++....++..
T Consensus 15 ~kI~ViGa-G~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~ 60 (328)
T 2hjr_A 15 KKISIIGA-GQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNH 60 (328)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHH
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHh
Confidence 57899998 9999999999999998 999999999888765545544
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=92.95 E-value=0.81 Score=46.36 Aligned_cols=120 Identities=13% Similarity=0.138 Sum_probs=69.0
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCC-------EEEEEEcChh--hHHHHHHHHHHHHhhhhhhcCCCCcccccCce
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGD-------RVVVASRSSE--SVRMTVTELEENLKEGMMAAGGSSKKNLVHAK 244 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga-------~Vvl~~R~~~--~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~ 244 (512)
.++.-.|.||||+|+||..++..|+.... .+++.+.++. .++-..-++.... ....
T Consensus 21 s~~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~---------------~~~~ 85 (345)
T 4h7p_A 21 SMSAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCA---------------FPLL 85 (345)
T ss_dssp -CCCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTT---------------CTTE
T ss_pred CCCCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhhcC---------------ccCC
Confidence 34556899999999999999999987643 6899998753 3444445554410 1111
Q ss_pred EEEEEccCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCC-C
Q 010380 245 VAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQP-K 323 (512)
Q Consensus 245 v~~v~~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~-~ 323 (512)
...+..+ |. . +.+..-|++|..||... + ..++.++ .++.|..= .+...+.+.+.. +
T Consensus 86 ~~~~~~~--~~---~-------~a~~~advVvi~aG~pr--k--pGmtR~D---Ll~~Na~I----~~~~~~~i~~~a~~ 142 (345)
T 4h7p_A 86 DKVVVTA--DP---R-------VAFDGVAIAIMCGAFPR--K--AGMERKD---LLEMNARI----FKEQGEAIAAVAAS 142 (345)
T ss_dssp EEEEEES--CH---H-------HHTTTCSEEEECCCCCC--C--TTCCHHH---HHHHHHHH----HHHHHHHHHHHSCT
T ss_pred CcEEEcC--Ch---H-------HHhCCCCEEEECCCCCC--C--CCCCHHH---HHHHhHHH----HHHHHHHHHhhccC
Confidence 1112211 11 1 22347899999999854 2 2345444 46666543 344455554422 2
Q ss_pred CCeEEeec
Q 010380 324 GGHIFNMD 331 (512)
Q Consensus 324 ~g~IV~vS 331 (512)
...|+.+|
T Consensus 143 ~~~vlvvs 150 (345)
T 4h7p_A 143 DCRVVVVG 150 (345)
T ss_dssp TCEEEECS
T ss_pred ceEEEEeC
Confidence 34455554
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.88 E-value=0.32 Score=48.53 Aligned_cols=80 Identities=19% Similarity=0.262 Sum_probs=52.0
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 175 AGPRNVVITGSTRGLGKALAREFLLSGDR-VVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 175 l~gk~vLVTGassGIG~aiA~~La~~Ga~-Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
..|++++|+|+ ||+|...++.+...|++ ++++++++++++.+ ++ .|... ..|..
T Consensus 159 ~~g~~VlV~Ga-G~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a-~~--------------------lGa~~---~i~~~ 213 (346)
T 4a2c_A 159 CENKNVIIIGA-GTIGLLAIQCAVALGAKSVTAIDISSEKLALA-KS--------------------FGAMQ---TFNSS 213 (346)
T ss_dssp CTTSEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHH-HH--------------------TTCSE---EEETT
T ss_pred CCCCEEEEECC-CCcchHHHHHHHHcCCcEEEEEechHHHHHHH-HH--------------------cCCeE---EEeCC
Confidence 35889999987 89999999999999986 56778888776432 22 22222 23444
Q ss_pred ChhhHHHHHHHHHHHcCCCccccccccc
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGT 281 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~ 281 (512)
+.+ ..+..+.+ ......|+++.++|.
T Consensus 214 ~~~-~~~~~~~~-~~~~g~d~v~d~~G~ 239 (346)
T 4a2c_A 214 EMS-APQMQSVL-RELRFNQLILETAGV 239 (346)
T ss_dssp TSC-HHHHHHHH-GGGCSSEEEEECSCS
T ss_pred CCC-HHHHHHhh-cccCCcccccccccc
Confidence 433 23333333 233568999988874
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=92.83 E-value=0.13 Score=54.41 Aligned_cols=60 Identities=12% Similarity=0.314 Sum_probs=46.9
Q ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhhH
Q 010380 179 NVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPADV 258 (512)
Q Consensus 179 ~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~sv 258 (512)
+++|.|+ |-+|..+|+.|.++|+.|++++++++.++.+.+++ .+.++..|.++++.+
T Consensus 5 ~iiI~G~-G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~----------------------~~~~i~Gd~~~~~~L 61 (461)
T 4g65_A 5 KIIILGA-GQVGGTLAENLVGENNDITIVDKDGDRLRELQDKY----------------------DLRVVNGHASHPDVL 61 (461)
T ss_dssp EEEEECC-SHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHS----------------------SCEEEESCTTCHHHH
T ss_pred EEEEECC-CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhc----------------------CcEEEEEcCCCHHHH
Confidence 5788887 68999999999999999999999998876554332 345677788877766
Q ss_pred HHH
Q 010380 259 QKL 261 (512)
Q Consensus 259 ~~~ 261 (512)
+++
T Consensus 62 ~~A 64 (461)
T 4g65_A 62 HEA 64 (461)
T ss_dssp HHH
T ss_pred Hhc
Confidence 554
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=92.54 E-value=0.12 Score=50.03 Aligned_cols=41 Identities=24% Similarity=0.382 Sum_probs=35.7
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcChhhHHH
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRSSESVRM 216 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~~~l~~ 216 (512)
.+++ +++|.|+ ||.|++++..|++.|+ +|++++|+.+++++
T Consensus 106 ~~~~-~vliiGa-Gg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~ 147 (253)
T 3u62_A 106 EVKE-PVVVVGA-GGAARAVIYALLQMGVKDIWVVNRTIERAKA 147 (253)
T ss_dssp CCCS-SEEEECC-SHHHHHHHHHHHHTTCCCEEEEESCHHHHHT
T ss_pred CCCC-eEEEECc-HHHHHHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence 3567 8999997 8999999999999998 89999999877543
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
Probab=92.51 E-value=0.18 Score=49.49 Aligned_cols=43 Identities=16% Similarity=0.187 Sum_probs=38.4
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHH
Q 010380 175 AGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMT 217 (512)
Q Consensus 175 l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~ 217 (512)
+.||+++|.|+++=+|+.+|+.|++.|++|.++.++...+++.
T Consensus 148 l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~t~~L~~~ 190 (276)
T 3ngx_A 148 YHENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSKTKDIGSM 190 (276)
T ss_dssp CCSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSCHHHH
T ss_pred cCCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCCcccHHHh
Confidence 8999999999999899999999999999999998876655443
|
| >1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* | Back alignment and structure |
|---|
Probab=92.40 E-value=0.046 Score=55.00 Aligned_cols=40 Identities=13% Similarity=0.157 Sum_probs=36.2
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChh
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSE 212 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~ 212 (512)
.++.|++++|.|++.=+|+.+|+.|+..|++|.+++|+..
T Consensus 173 ~~l~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~ 212 (320)
T 1edz_A 173 NRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNI 212 (320)
T ss_dssp CTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEE
T ss_pred CCCCCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchH
Confidence 3789999999999888899999999999999999998744
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=92.32 E-value=0.24 Score=48.38 Aligned_cols=40 Identities=23% Similarity=0.312 Sum_probs=34.4
Q ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHH
Q 010380 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTV 218 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~ 218 (512)
++|.|.|. |.+|..+|+.|++.|++|++.+|++++.+...
T Consensus 2 ~~i~iIG~-G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~ 41 (287)
T 3pef_A 2 QKFGFIGL-GIMGSAMAKNLVKAGCSVTIWNRSPEKAEELA 41 (287)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSGGGGHHHH
T ss_pred CEEEEEee-cHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH
Confidence 45777875 89999999999999999999999998876554
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=92.30 E-value=0.46 Score=48.35 Aligned_cols=46 Identities=15% Similarity=0.195 Sum_probs=36.0
Q ss_pred cCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHH
Q 010380 172 HCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTV 218 (512)
Q Consensus 172 ~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~ 218 (512)
.+++++++|.|.| .|-+|..+|+.|++.|++|++.+|++++.+.+.
T Consensus 17 ~~Mm~~mkIgiIG-lG~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~ 62 (358)
T 4e21_A 17 NLYFQSMQIGMIG-LGRMGADMVRRLRKGGHECVVYDLNVNAVQALE 62 (358)
T ss_dssp -----CCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH
T ss_pred hhhhcCCEEEEEC-chHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHH
Confidence 3456677888888 689999999999999999999999988776543
|
| >1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=92.15 E-value=0.18 Score=49.42 Aligned_cols=45 Identities=22% Similarity=0.335 Sum_probs=38.4
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcChhhHHHHHHHH
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRSSESVRMTVTEL 221 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~~~l~~~~~el 221 (512)
.+++++|.|+ ||.|++++..|++.|+ +|+++.|+.++++++.+++
T Consensus 118 ~~~~vlvlGa-Ggaarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~ 163 (271)
T 1npy_A 118 KNAKVIVHGS-GGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALY 163 (271)
T ss_dssp TTSCEEEECS-STTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHH
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHc
Confidence 4678999995 8999999999999997 7999999998887665543
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=92.10 E-value=0.19 Score=49.56 Aligned_cols=44 Identities=25% Similarity=0.374 Sum_probs=38.7
Q ss_pred cCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHH
Q 010380 172 HCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVR 215 (512)
Q Consensus 172 ~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~ 215 (512)
..++.||+++|.|.++=+|+.+|..|+..|++|.++.++...++
T Consensus 156 ~i~l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T~~L~ 199 (286)
T 4a5o_A 156 GADLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFTRDLA 199 (286)
T ss_dssp TCCCTTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTCSCHH
T ss_pred CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCCcCHH
Confidence 35789999999999988999999999999999999988665544
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=91.92 E-value=0.23 Score=49.40 Aligned_cols=44 Identities=11% Similarity=0.217 Sum_probs=38.4
Q ss_pred cCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHH
Q 010380 172 HCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVR 215 (512)
Q Consensus 172 ~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~ 215 (512)
..++.||+++|.|.++=+|+.+|+.|++.|++|.++.|+...++
T Consensus 160 ~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T~~l~ 203 (300)
T 4a26_A 160 GIEMAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTSTED 203 (300)
T ss_dssp TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTSCHHH
T ss_pred CCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCCCCch
Confidence 35789999999999888999999999999999999998655443
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=91.87 E-value=0.12 Score=51.80 Aligned_cols=71 Identities=20% Similarity=0.137 Sum_probs=52.7
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChh
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPA 256 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~ 256 (512)
.++++|.|+ |.+|..++++|.++|. |++++++++..+ .. + ..+.++..|.+|++
T Consensus 115 ~~~viI~G~-G~~g~~l~~~L~~~g~-v~vid~~~~~~~-~~----~-------------------~~~~~i~gd~~~~~ 168 (336)
T 1lnq_A 115 SRHVVICGW-SESTLECLRELRGSEV-FVLAEDENVRKK-VL----R-------------------SGANFVHGDPTRVS 168 (336)
T ss_dssp -CEEEEESC-CHHHHHHHTTGGGSCE-EEEESCGGGHHH-HH----H-------------------TTCEEEESCTTSHH
T ss_pred cCCEEEECC-cHHHHHHHHHHHhCCc-EEEEeCChhhhh-HH----h-------------------CCcEEEEeCCCCHH
Confidence 568999997 8999999999999999 999999988764 21 1 23567889999988
Q ss_pred hHHHHHHHHHHHcCCCccccccc
Q 010380 257 DVQKLSNFAVNEFGSIDIWINNA 279 (512)
Q Consensus 257 sv~~~~~~i~~~~g~IDvLInnA 279 (512)
.++++ ...+.|.+|...
T Consensus 169 ~L~~a------~i~~a~~vi~~~ 185 (336)
T 1lnq_A 169 DLEKA------NVRGARAVIVDL 185 (336)
T ss_dssp HHHHT------CSTTEEEEEECC
T ss_pred HHHhc------ChhhccEEEEcC
Confidence 77654 112456666544
|
| >1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B* | Back alignment and structure |
|---|
Probab=91.78 E-value=0.22 Score=52.19 Aligned_cols=34 Identities=29% Similarity=0.468 Sum_probs=29.7
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcC
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRS 210 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~ 210 (512)
.+.+|+|.|+ ||+|.++++.|+..|. ++.+++.+
T Consensus 39 ~~~~VlvvG~-GGlGs~va~~La~aGvg~i~ivD~D 73 (434)
T 1tt5_B 39 DTCKVLVIGA-GGLGCELLKNLALSGFRQIHVIDMD 73 (434)
T ss_dssp HTCCEEEECS-STHHHHHHHHHHHTTCCCEEEEECC
T ss_pred cCCEEEEECc-CHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 5678899997 7999999999999997 89999754
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=91.69 E-value=0.2 Score=49.44 Aligned_cols=44 Identities=18% Similarity=0.287 Sum_probs=38.6
Q ss_pred cCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHH
Q 010380 172 HCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVR 215 (512)
Q Consensus 172 ~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~ 215 (512)
..++.||+++|.|+++=+|+.+|+.|+..|++|.++.|+...++
T Consensus 156 ~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~ 199 (285)
T 3l07_A 156 GIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFTTDLK 199 (285)
T ss_dssp TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHH
T ss_pred CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchhHH
Confidence 35789999999999888999999999999999999988765544
|
| >4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.65 E-value=0.19 Score=50.62 Aligned_cols=38 Identities=18% Similarity=0.142 Sum_probs=29.9
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEEcChhhH
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSG-DRVVVASRSSESV 214 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~G-a~Vvl~~R~~~~l 214 (512)
.|++|+|+|++|++|...++.+...| .+|+.++ +.++.
T Consensus 142 ~g~~VlV~Ga~G~vG~~a~qla~~~g~~~V~~~~-~~~~~ 180 (349)
T 4a27_A 142 EGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTA-STFKH 180 (349)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHTTSTTCEEEEEE-CGGGH
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHcCCcEEEEeC-CHHHH
Confidence 58899999999999999888766665 6888777 44444
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=91.65 E-value=0.26 Score=48.46 Aligned_cols=91 Identities=13% Similarity=0.067 Sum_probs=55.9
Q ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhh
Q 010380 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPAD 257 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~s 257 (512)
++|.|.| .|-+|..+|+.|++.|++|++.+|++++.+.+.+. .... ......... ..++..=+.+...
T Consensus 16 ~~I~vIG-~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~-------g~~~--~~~~~~~~~--aDvvi~~vp~~~~ 83 (296)
T 3qha_A 16 LKLGYIG-LGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEA-------GATL--ADSVADVAA--ADLIHITVLDDAQ 83 (296)
T ss_dssp CCEEEEC-CSTTHHHHHHHHTTSTTCEEEECSSTTTSHHHHHT-------TCEE--CSSHHHHTT--SSEEEECCSSHHH
T ss_pred CeEEEEC-cCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHC-------CCEE--cCCHHHHHh--CCEEEEECCChHH
Confidence 4566676 58899999999999999999999999887654431 0000 000000011 2234444556677
Q ss_pred HHHHHHHHHHHcCCCcccccccc
Q 010380 258 VQKLSNFAVNEFGSIDIWINNAG 280 (512)
Q Consensus 258 v~~~~~~i~~~~g~IDvLInnAG 280 (512)
++.+++.+.....+=.++|+...
T Consensus 84 ~~~v~~~l~~~l~~g~ivv~~st 106 (296)
T 3qha_A 84 VREVVGELAGHAKPGTVIAIHST 106 (296)
T ss_dssp HHHHHHHHHTTCCTTCEEEECSC
T ss_pred HHHHHHHHHHhcCCCCEEEEeCC
Confidence 88887777655444456666554
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=91.59 E-value=0.39 Score=47.22 Aligned_cols=44 Identities=18% Similarity=0.364 Sum_probs=38.1
Q ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHH
Q 010380 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELE 222 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~ 222 (512)
++|.|.|+ |.+|.++|..|++.|++|++.+|+++.++...+.+.
T Consensus 16 ~~I~VIG~-G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~i~ 59 (302)
T 1f0y_A 16 KHVTVIGG-GLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIE 59 (302)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHH
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHH
Confidence 57888987 899999999999999999999999988877655443
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=91.51 E-value=0.36 Score=50.55 Aligned_cols=50 Identities=24% Similarity=0.185 Sum_probs=39.1
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHH
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEE 223 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~ 223 (512)
+++++|.++|.|. |+.|.++|+.|+++|++|.+.+++........+.+++
T Consensus 5 ~~~~~k~v~viG~-G~sG~s~A~~l~~~G~~V~~~D~~~~~~~~~~~~L~~ 54 (451)
T 3lk7_A 5 TTFENKKVLVLGL-ARSGEAAARLLAKLGAIVTVNDGKPFDENPTAQSLLE 54 (451)
T ss_dssp CTTTTCEEEEECC-TTTHHHHHHHHHHTTCEEEEEESSCGGGCHHHHHHHH
T ss_pred hhcCCCEEEEEee-CHHHHHHHHHHHhCCCEEEEEeCCcccCChHHHHHHh
Confidence 4578999999998 8899999999999999999999975422223344443
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=91.48 E-value=0.3 Score=48.11 Aligned_cols=37 Identities=27% Similarity=0.338 Sum_probs=33.1
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhh
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSES 213 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~ 213 (512)
.++|.|.||.|.||.++|+.|++.|++|++.+|+++.
T Consensus 21 ~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~~ 57 (298)
T 2pv7_A 21 IHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWA 57 (298)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGG
T ss_pred CCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCccc
Confidence 3568899999999999999999999999999998653
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=91.42 E-value=0.28 Score=47.84 Aligned_cols=40 Identities=18% Similarity=0.248 Sum_probs=35.6
Q ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHH
Q 010380 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMT 217 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~ 217 (512)
+++.|.|++|.+|.++++.|++.|++|++.+|++++.+.+
T Consensus 12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~~ 51 (286)
T 3c24_A 12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRL 51 (286)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHH
Confidence 4789999999999999999999999999999998776543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 512 | ||||
| d1xg5a_ | 257 | c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC41 | 9e-37 | |
| d1spxa_ | 264 | c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nemato | 1e-35 | |
| d2ew8a1 | 247 | c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenas | 1e-34 | |
| d2d1ya1 | 248 | c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {T | 5e-34 | |
| d1xkqa_ | 272 | c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorh | 2e-32 | |
| d1xq1a_ | 259 | c.2.1.2 (A:) Tropinone reductase {Thale cress (Ara | 3e-32 | |
| d1yb1a_ | 244 | c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase | 4e-32 | |
| d1cyda_ | 242 | c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus muscul | 6e-32 | |
| d1ydea1 | 250 | c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase | 1e-31 | |
| d2ae2a_ | 259 | c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datu | 1e-31 | |
| d1zk4a1 | 251 | c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase | 2e-31 | |
| d2bd0a1 | 240 | c.2.1.2 (A:2-241) Bacterial sepiapterin reductase | 3e-31 | |
| d1hdca_ | 254 | c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydr | 4e-31 | |
| d1xhla_ | 274 | c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorh | 5e-31 | |
| d2bgka1 | 268 | c.2.1.2 (A:11-278) Rhizome secoisolariciresinol de | 8e-31 | |
| d1yxma1 | 297 | c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA re | 1e-30 | |
| d2gdza1 | 254 | c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrog | 5e-30 | |
| d1gz6a_ | 302 | c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase do | 3e-29 | |
| d1sbya1 | 254 | c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase | 5e-29 | |
| d1ja9a_ | 259 | c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reduc | 5e-29 | |
| d1vl8a_ | 251 | c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga | 6e-29 | |
| d1iy8a_ | 258 | c.2.1.2 (A:) Levodione reductase {Corynebacterium | 1e-28 | |
| d1bdba_ | 276 | c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehy | 1e-28 | |
| d1hxha_ | 253 | c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydroge | 2e-28 | |
| d1pr9a_ | 244 | c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapie | 2e-28 | |
| d1yo6a1 | 250 | c.2.1.2 (A:1-250) Putative carbonyl reductase snif | 2e-28 | |
| d2rhca1 | 257 | c.2.1.2 (A:5-261) beta-keto acyl carrier protein r | 4e-28 | |
| d1ulsa_ | 242 | c.2.1.2 (A:) beta-keto acyl carrier protein reduct | 5e-28 | |
| d1xu9a_ | 269 | c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase | 2e-27 | |
| d1h5qa_ | 260 | c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Aga | 3e-27 | |
| d1zema1 | 260 | c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconoba | 5e-27 | |
| d1zmta1 | 252 | c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Ag | 5e-26 | |
| d1wmaa1 | 275 | c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydrox | 4e-25 | |
| d1fmca_ | 255 | c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase | 6e-25 | |
| d1x1ta1 | 260 | c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydroge | 1e-24 | |
| d2a4ka1 | 241 | c.2.1.2 (A:2-242) beta-keto acyl carrier protein r | 2e-24 | |
| d1g0oa_ | 272 | c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase | 3e-24 | |
| d1geea_ | 261 | c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megat | 6e-24 | |
| d1nffa_ | 244 | c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycob | 7e-24 | |
| d1oaaa_ | 259 | c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus mus | 3e-23 | |
| d1ae1a_ | 258 | c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datu | 3e-23 | |
| d1q7ba_ | 243 | c.2.1.2 (A:) beta-keto acyl carrier protein reduct | 7e-23 | |
| d2c07a1 | 251 | c.2.1.2 (A:54-304) beta-keto acyl carrier protein | 2e-22 | |
| d1k2wa_ | 256 | c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter s | 2e-22 | |
| d1edoa_ | 244 | c.2.1.2 (A:) beta-keto acyl carrier protein reduct | 5e-22 | |
| d1gega_ | 255 | c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Kl | 7e-22 | |
| d1w6ua_ | 294 | c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondr | 1e-21 | |
| d1jtva_ | 285 | c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroi | 4e-21 | |
| d1o5ia_ | 234 | c.2.1.2 (A:) beta-keto acyl carrier protein reduct | 4e-21 | |
| d1mxha_ | 266 | c.2.1.2 (A:) Dihydropteridin reductase (pteridine | 5e-21 | |
| d2ag5a1 | 245 | c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR fami | 2e-20 | |
| d1uzma1 | 237 | c.2.1.2 (A:9-245) beta-keto acyl carrier protein r | 5e-20 | |
| d1snya_ | 248 | c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly | 8e-18 | |
| d1dhra_ | 236 | c.2.1.2 (A:) Dihydropteridin reductase (pteridine | 8e-16 | |
| d1ooea_ | 235 | c.2.1.2 (A:) Dihydropteridin reductase (pteridine | 1e-15 | |
| d1uaya_ | 241 | c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogena | 3e-15 | |
| d2o23a1 | 248 | c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydr | 5e-15 | |
| d1e7wa_ | 284 | c.2.1.2 (A:) Dihydropteridin reductase (pteridine | 7e-14 | |
| d1ulua_ | 256 | c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermoph | 8e-14 | |
| d1fjha_ | 257 | c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase | 1e-10 | |
| d1uh5a_ | 329 | c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite | 2e-10 | |
| d1qsga_ | 258 | c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli | 8e-10 | |
| d1luaa1 | 191 | c.2.1.7 (A:98-288) Methylene-tetrahydromethanopter | 2e-09 | |
| d1jaya_ | 212 | c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase | 2e-08 | |
| d2pd4a1 | 274 | c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacte | 6e-08 | |
| d2fr1a1 | 259 | c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI | 1e-07 | |
| d1d7oa_ | 297 | c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (B | 2e-06 | |
| d2h7ma1 | 268 | c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacteri | 2e-04 | |
| d1xgka_ | 350 | c.2.1.2 (A:) Negative transcriptional regulator Nm | 4e-04 | |
| d1hdoa_ | 205 | c.2.1.2 (A:) Biliverdin IX beta reductase {Human ( | 0.002 | |
| d1qyda_ | 312 | c.2.1.2 (A:) Pinoresinol-lariciresinol reductase { | 0.003 |
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Score = 134 bits (339), Expect = 9e-37
Identities = 54/242 (22%), Positives = 103/242 (42%), Gaps = 24/242 (9%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
R ++TG++ G+G A+AR + G +VV +R+ ++ E + G
Sbjct: 11 RLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPG--------- 61
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
+ CD+ D+ + + ++ +DI INNAG + LL + +
Sbjct: 62 ------TLIPYRCDLSNEEDILSMFSAIRSQHSGVDICINNAGLAR-PDTLLSGSTSGWK 114
Query: 298 QIVSTNLVGSILCTREAMRVMRDQ-PKGGHIFNM-DGAGSGGSSTPLTAVYGSTKCGLRQ 355
+ + N++ +CTREA + M+++ GHI N+ +G +T Y +TK +
Sbjct: 115 DMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRVLPLSVTHFYSATKYAVTA 174
Query: 356 LQASLFKESKRSKVG--VHTASPGMVLTDLLLSGSTIQNKQMFNIICEL----PETVART 409
L L +E + ++ SPG+V T ++ ++ PE VA
Sbjct: 175 LTEGLRQELREAQTHIRATCISPGVVETQFAFKLHDKDPEKAAATYEQMKCLKPEDVAEA 234
Query: 410 LV 411
++
Sbjct: 235 VI 236
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 264 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 131 bits (331), Expect = 1e-35
Identities = 53/210 (25%), Positives = 91/210 (43%), Gaps = 19/210 (9%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ +ITGS+ G+G+A A F G +V + R +E + T ++ AAG S +
Sbjct: 6 KVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQIL--------AAGVSEQ 57
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKG---FKPLLQFTNE 294
V + DV A ++ + + +FG +DI +NNAG K + E
Sbjct: 58 N------VNSVVADVTTDAGQDEILSTTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIE 111
Query: 295 EIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLR 354
+ ++ NL I T++A+ + G I N+ SG +TP Y K +
Sbjct: 112 SYDATLNLNLRSVIALTKKAVPHLSST--KGEIVNISSIASGLHATPDFPYYSIAKAAID 169
Query: 355 QLQASLFKESKRSKVGVHTASPGMVLTDLL 384
Q + + + + V++ SPG+V T
Sbjct: 170 QYTRNTAIDLIQHGIRVNSISPGLVATGFG 199
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} Length = 247 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Score = 128 bits (322), Expect = 1e-34
Identities = 46/207 (22%), Positives = 77/207 (37%), Gaps = 22/207 (10%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ VITG G+G+A+A F + G + +A E E ++ G
Sbjct: 6 KLAVITGGANGIGRAIAERFAVEGADIAIADLVPAP------EAEAAIRN----LGR--- 52
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
+V + CDV +P DV+ ++ FG DI +NNAG P + T E+ +
Sbjct: 53 ------RVLTVKCDVSQPGDVEAFGKQVISTFGRCDILVNNAGIYP-LIPFDELTFEQWK 105
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQ 357
+ N+ L + + M+ G I Y STK
Sbjct: 106 KTFEINVDSGFLMAKAFVPGMKRNGWGRIINLTSTTYWLKI--EAYTHYISTKAANIGFT 163
Query: 358 ASLFKESKRSKVGVHTASPGMVLTDLL 384
+L + + + V+ +P +V T
Sbjct: 164 RALASDLGKDGITVNAIAPSLVRTATT 190
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} Length = 248 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Score = 126 bits (319), Expect = 5e-34
Identities = 46/209 (22%), Positives = 80/209 (38%), Gaps = 26/209 (12%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ V++TG RG+G+A+A+ F G V + E E+ E +
Sbjct: 6 KGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGK-----EVAEAIG----------- 49
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
A D+ + + + A G +D+ +NNA L E
Sbjct: 50 -------GAFFQVDLEDERERVRFVEEAAYALGRVDVLVNNAAIA-APGSALTVRLPEWR 101
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQ 357
+++ NL + + A R MR GG + G + A Y ++K GL L
Sbjct: 102 RVLEVNLTAPMHLSALAAREMRKV--GGGAIVNVASVQGLFAEQENAAYNASKGGLVNLT 159
Query: 358 ASLFKESKRSKVGVHTASPGMVLTDLLLS 386
SL + ++ V+ +PG + T+ +L
Sbjct: 160 RSLALDLAPLRIRVNAVAPGAIATEAVLE 188
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} Length = 272 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Score = 123 bits (309), Expect = 2e-32
Identities = 50/210 (23%), Positives = 81/210 (38%), Gaps = 19/210 (9%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ V+ITGS+ G+G+ A F G V + RSSE + T + K
Sbjct: 6 KTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIIL--------------K 51
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
+ +V + DV ++ N + +FG ID+ +NNAG T++ I+
Sbjct: 52 SGVSEKQVNSVVADVTTEDGQDQIINSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGID 111
Query: 298 ---QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLR 354
+ + NL I T++ + + AG P Y K L
Sbjct: 112 IYHKTLKLNLQAVIEMTKKVKPHLVASKGEIVNVSSIVAGPQAQ--PDFLYYAIAKAALD 169
Query: 355 QLQASLFKESKRSKVGVHTASPGMVLTDLL 384
Q S + + + V++ SPGMV T
Sbjct: 170 QYTRSTAIDLAKFGIRVNSVSPGMVETGFT 199
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 122 bits (306), Expect = 3e-32
Identities = 53/220 (24%), Positives = 96/220 (43%), Gaps = 21/220 (9%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ V++TG T+G+G A+ EF G + +R+ + +++ ++
Sbjct: 9 KTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKK------------- 55
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEF-GSIDIWINNAGTNKGFKPLLQFTNEEI 296
+V G CD + +KL + F G +DI INN G KP L +T E+
Sbjct: 56 ----GFQVTGSVCDASLRPEREKLMQTVSSMFGGKLDILINNLGAI-RSKPTLDYTAEDF 110
Query: 297 EQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQL 356
+STNL + ++ A +++ G IF AG +S ++Y +TK L QL
Sbjct: 111 SFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIAGVVSASV--GSIYSATKGALNQL 168
Query: 357 QASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMF 396
+L E + + +P ++ T L + + K++
Sbjct: 169 ARNLACEWASDGIRANAVAPAVIATPLAEAVYDDEFKKVV 208
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Score = 121 bits (304), Expect = 4e-32
Identities = 51/237 (21%), Positives = 83/237 (35%), Gaps = 29/237 (12%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
V+ITG+ G+G+ A EF ++V+ + + T + +
Sbjct: 8 EIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGL------------- 54
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
AKV D D+ + E G + I +NNAG L + +IE
Sbjct: 55 ----GAKVHTFVVDCSNREDIYSSAKKVKAEIGDVSILVNNAGVV-YTSDLFATQDPQIE 109
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQ 357
+ N++ T+ + M GHI + A +G S P Y S+K
Sbjct: 110 KTFEVNVLAHFWTTKAFLPAMTKN-NHGHIVTVASA-AGHVSVPFLLAYCSSKFAAVGFH 167
Query: 358 ASLFKE---SKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLV 411
+L E + + V P V T + + ST + PE V L+
Sbjct: 168 KTLTDELAALQITGVKTTCLCPNFVNTGFIKNPSTSLGPTL------EPEEVVNRLM 218
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 120 bits (303), Expect = 6e-32
Identities = 44/207 (21%), Positives = 85/207 (41%), Gaps = 27/207 (13%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
++TG+ +G+G+ + SG +VV +R++ + E
Sbjct: 6 LRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECP--------------- 50
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
+ + D+ + +K A+ G +D+ +NNA +P L+ T E +
Sbjct: 51 ------GIEPVCVDLGDWDATEK----ALGGIGPVDLLVNNAALV-IMQPFLEVTKEAFD 99
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQ 357
+ S NL ++ R M ++ G I N+ + + P Y STK + L
Sbjct: 100 RSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHV-TFPNLITYSSTKGAMTMLT 158
Query: 358 ASLFKESKRSKVGVHTASPGMVLTDLL 384
++ E K+ V++ +P +VLTD+
Sbjct: 159 KAMAMELGPHKIRVNSVNPTVVLTDMG 185
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 120 bits (301), Expect = 1e-31
Identities = 52/207 (25%), Positives = 87/207 (42%), Gaps = 24/207 (11%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ VV+TG RG+G + R F+ SG RVV+ + R EL
Sbjct: 7 KVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELP--------------- 51
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
I CDV + DV+ L + + FG +D +NNAG + + + + +
Sbjct: 52 ------GAVFILCDVTQEDDVKTLVSETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFR 105
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQ 357
Q++ NL+G+ T+ A+ +R G++ N+ G Y +TK + +
Sbjct: 106 QLLELNLLGTYTLTKLALPYLRKS--QGNVINISSL-VGAIGQAQAVPYVATKGAVTAMT 162
Query: 358 ASLFKESKRSKVGVHTASPGMVLTDLL 384
+L + V V+ SPG + T L
Sbjct: 163 KALALDESPYGVRVNCISPGNIWTPLW 189
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Score = 120 bits (301), Expect = 1e-31
Identities = 52/208 (25%), Positives = 89/208 (42%), Gaps = 21/208 (10%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
++TG +RG+G + E G V SR+ + + +T+
Sbjct: 9 CTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSK------------- 55
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEF-GSIDIWINNAGTNKGFKPLLQFTNEEI 296
KV CD+ ++ Q+L N N F G ++I +NNAG +K +T E+
Sbjct: 56 ----GFKVEASVCDLSSRSERQELMNTVANHFHGKLNILVNNAGIV-IYKEAKDYTVEDY 110
Query: 297 EQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQL 356
I+S N + + A ++ +G +F +G+ P AVYG+TK + QL
Sbjct: 111 SLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGALA--VPYEAVYGATKGAMDQL 168
Query: 357 QASLFKESKRSKVGVHTASPGMVLTDLL 384
L E + + V+ PG++ T L+
Sbjct: 169 TRCLAFEWAKDNIRVNGVGPGVIATSLV 196
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Score = 119 bits (300), Expect = 2e-31
Identities = 49/209 (23%), Positives = 85/209 (40%), Gaps = 22/209 (10%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ +ITG T G+G A+A +F+ G +V++ R S+ +
Sbjct: 7 KVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGT-------------- 52
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
++ D + KL + FG + +NNAG K + + T E
Sbjct: 53 ----PDQIQFFQHDSSDEDGWTKLFDATEKAFGPVSTLVNNAGIAV-NKSVEETTTAEWR 107
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQ 357
++++ NL G TR ++ M+++ G I NM G P Y ++K +R +
Sbjct: 108 KLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSI-EGFVGDPSLGAYNASKGAVRIMS 166
Query: 358 ASLFKES--KRSKVGVHTASPGMVLTDLL 384
S + K V V+T PG + T L+
Sbjct: 167 KSAALDCALKDYDVRVNTVHPGYIKTPLV 195
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Score = 119 bits (298), Expect = 3e-31
Identities = 55/239 (23%), Positives = 97/239 (40%), Gaps = 32/239 (13%)
Query: 180 VVITGSTRGLGKALAREFLLSGDR-------VVVASRSSESVRMTVTELEENLKEGMMAA 232
++ITG+ +G+G+A+A EF + +V++SR++ + E
Sbjct: 4 LLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAE-------- 55
Query: 233 GGSSKKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFT 292
A I D+ + ADV++L+ V +G ID +NN F L T
Sbjct: 56 ---------GALTDTITADISDMADVRRLTTHIVERYGHIDCLVNN-AGVGRFGALSDLT 105
Query: 293 NEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCG 352
E+ + ++TNL G+ T+ +M Q G F A + +++Y +K G
Sbjct: 106 EEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVAATKAF--RHSSIYCMSKFG 163
Query: 353 LRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLV 411
R L ++ +++ V + PG V T + M PE +A +V
Sbjct: 164 QRGLVETMRLYARKCNVRITDVQPGAVYTPMWGKVDDEMQALMMM-----PEDIAAPVV 217
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Score = 118 bits (298), Expect = 4e-31
Identities = 66/239 (27%), Positives = 100/239 (41%), Gaps = 28/239 (11%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ V+ITG RGLG AR+ + +G RVV+A E T EL +
Sbjct: 6 KTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARELGD-------------- 51
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
DV D Q++ +A EFGS+D +NNAG + G L + E
Sbjct: 52 ------AARYQHLDVTIEEDWQRVVAYAREEFGSVDGLVNNAGISTG-MFLETESVERFR 104
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQ 357
++V NL G + + + M+D GG I N+ A G LT+ YG++K G+R L
Sbjct: 105 KVVEINLTGVFIGMKTVIPAMKDA-GGGSIVNISSAA-GLMGLALTSSYGASKWGVRGLS 162
Query: 358 ASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNII-----CELPETVARTLV 411
E ++ V++ PGM T + Q + + P +A +V
Sbjct: 163 KLAAVELGTDRIRVNSVHPGMTYTPMTAETGIRQGEGNYPNTPMGRVGNEPGEIAGAVV 221
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Score = 119 bits (299), Expect = 5e-31
Identities = 49/208 (23%), Positives = 84/208 (40%), Gaps = 17/208 (8%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
++V+ITGS+ G+G++ A F G +V + R+ + + T ++ AG ++
Sbjct: 5 KSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQIL--------KAGVPAE 56
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTN-KGFKPLLQFTNEEI 296
K+ + DV E + + N + +FG IDI +NNAG N E
Sbjct: 57 ------KINAVVADVTEASGQDDIINTTLAKFGKIDILVNNAGANLADGTANTDQPVELY 110
Query: 297 EQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQL 356
++ N I T++ G I N+ +G + Y K L Q
Sbjct: 111 QKTFKLNFQAVIEMTQKTK--EHLIKTKGEIVNVSSIVAGPQAHSGYPYYACAKAALDQY 168
Query: 357 QASLFKESKRSKVGVHTASPGMVLTDLL 384
+ + V V++ SPG V T +
Sbjct: 169 TRCTAIDLIQHGVRVNSVSPGAVATGFM 196
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Score = 118 bits (296), Expect = 8e-31
Identities = 51/236 (21%), Positives = 97/236 (41%), Gaps = 20/236 (8%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ +ITG G+G+ A+ F+ G +VV+A + + + +
Sbjct: 7 KVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSP------------- 53
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNK-GFKPLLQFTNEEI 296
++ + CDV + DV+ L + + + G +DI N G +L+ NE+
Sbjct: 54 -----DVISFVHCDVTKDEDVRNLVDTTIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDF 108
Query: 297 EQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQL 356
++++ N+ G+ L + A RVM K G I S + ++ VY +TK + L
Sbjct: 109 KRVMDINVYGAFLVAKHAARVMIPA-KKGSIVFTASISSFTAGEGVSHVYTATKHAVLGL 167
Query: 357 QASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVP 412
SL E + V+ SP +V + LL + + ++ + + L
Sbjct: 168 TTSLCTELGEYGIRVNCVSPYIVASPLLTDVFGVDSSRVEELAHQAANLKGTLLRA 223
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 297 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 118 bits (297), Expect = 1e-30
Identities = 53/242 (21%), Positives = 97/242 (40%), Gaps = 24/242 (9%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ ++TG G+GKA+ +E L G VV+ASR E ++ EL+ NL
Sbjct: 13 QVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTK-------- 64
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
A+V I C++ +V L ++ FG I+ +NN G P +++
Sbjct: 65 ----QARVIPIQCNIRNEEEVNNLVKSTLDTFGKINFLVNNGGGQF-LSPAEHISSKGWH 119
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQ 357
++ TNL G+ + + G + + +G PL G+ + G+ L
Sbjct: 120 AVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVPTKAGF---PLAVHSGAARAGVYNLT 176
Query: 358 ASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICEL--------PETVART 409
SL E S + ++ +PG++ + + + F + PE V+
Sbjct: 177 KSLALEWACSGIRINCVAPGVIYSQTAVENYGSWGQSFFEGSFQKIPAKRIGVPEEVSSV 236
Query: 410 LV 411
+
Sbjct: 237 VC 238
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Score = 115 bits (290), Expect = 5e-30
Identities = 52/210 (24%), Positives = 83/210 (39%), Gaps = 27/210 (12%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ ++TG+ +G+G+A A LL G +V + + E+ L E +
Sbjct: 4 KVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQ--------- 54
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
K I CDV + ++ V+ FG +DI +NNAG + E
Sbjct: 55 ------KTLFIQCDVADQQQLRDTFRKVVDHFGRLDILVNNAGV---------NNEKNWE 99
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKG-GHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQL 356
+ + NLV I T + M Q G G I + +G VY ++K G+
Sbjct: 100 KTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPVAQQPVYCASKHGIVGF 159
Query: 357 --QASLFKESKRSKVGVHTASPGMVLTDLL 384
A+L S V ++ PG V T +L
Sbjct: 160 TRSAALAANLMNSGVRLNAICPGFVNTAIL 189
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 302 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 115 bits (288), Expect = 3e-29
Identities = 51/206 (24%), Positives = 82/206 (39%), Gaps = 14/206 (6%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
R V++TG+ GLG+A A F G VVV + G ++
Sbjct: 8 RVVLVTGAGGGLGRAYALAFAERGALVVVNDLG-----------GDFKGVGKGSSAADKV 56
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
+ + + +KL A++ FG ID+ +NNAG + + ++E+ +
Sbjct: 57 VEEIRRRGGKAVANYDSVEAGEKLVKTALDTFGRIDVVVNNAGIL-RDRSFSRISDEDWD 115
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQ 357
I +L GS TR A M+ Q G I A SG A Y + K GL L
Sbjct: 116 IIQRVHLRGSFQVTRAAWDHMKKQ-NYGRIIMTASA-SGIYGNFGQANYSAAKLGLLGLA 173
Query: 358 ASLFKESKRSKVGVHTASPGMVLTDL 383
+L E +++ + +T +P
Sbjct: 174 NTLVIEGRKNNIHCNTIAPNAGSRMT 199
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Score = 113 bits (283), Expect = 5e-29
Identities = 46/243 (18%), Positives = 91/243 (37%), Gaps = 35/243 (14%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+NV+ + G+G +RE + + V E+ L E
Sbjct: 6 KNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVEN--------PTALAELKAINPK--- 54
Query: 238 KNLVHAKVAGIACDVCEP-ADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEI 296
+ DV P A+ +KL ++ ++DI IN AG + +I
Sbjct: 55 -----VNITFHTYDVTVPVAESKKLLKKIFDQLKTVDILINGAG---------ILDDHQI 100
Query: 297 EQIVSTNLVGSILCTREAMR--VMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLR 354
E+ ++ N G + T + R GG I N+ +G ++ VY ++K +
Sbjct: 101 ERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSV-TGFNAIHQVPVYSASKAAVV 159
Query: 355 QLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQN------KQMFNIICELPETVAR 408
SL K + + V ++ +PG+ T L+ + ++ + + + + + E +
Sbjct: 160 SFTNSLAKLAPITGVTAYSINPGITRTPLVHTFNSWLDVEPRVAELLLSHPTQTSEQCGQ 219
Query: 409 TLV 411
V
Sbjct: 220 NFV 222
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Score = 112 bits (282), Expect = 5e-29
Identities = 50/237 (21%), Positives = 93/237 (39%), Gaps = 22/237 (9%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ + TG+ RG+G+ +A E G VVV SS + E + + G
Sbjct: 7 KVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSS-------KAAEEVVAELKKLGA--- 56
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
+ I D+ +P++V L + AV+ FG +D ++N+G + L+ T E +
Sbjct: 57 ------QGVAIQADISKPSEVVALFDKAVSHFGGLDFVMSNSGMEV-WCDELEVTQELFD 109
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQ 357
++ + N G ++ ++ R +GG I + + P A+Y +K +
Sbjct: 110 KVFNLNTRGQFFVAQQGLKHCR---RGGRIILTSSIAAVMTGIPNHALYAGSKAAVEGFC 166
Query: 358 ASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPRI 414
+ + V V+ +PG V TD+ S + E + L
Sbjct: 167 RAFAVDCGAKGVTVNCIAPGGVKTDMFDENS--WHYAPGGYKGMPQEKIDEGLANMN 221
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Score = 112 bits (282), Expect = 6e-29
Identities = 56/207 (27%), Positives = 89/207 (42%), Gaps = 18/207 (8%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
R ++TG +RGLG +A+ +G VVVASR+ E +L E
Sbjct: 6 RVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKY------------ 53
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
+ CDV +V+KL +FG +D +N AG N+ P +F +E
Sbjct: 54 ----GVETMAFRCDVSNYEEVKKLLEAVKEKFGKLDTVVNAAGINR-RHPAEEFPLDEFR 108
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQ 357
Q++ NL G+ REA ++R+ I + P + Y ++K G+ L
Sbjct: 109 QVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLTVEEV-TMPNISAYAASKGGVASLT 167
Query: 358 ASLFKESKRSKVGVHTASPGMVLTDLL 384
+L KE R + V+ +PG T +
Sbjct: 168 KALAKEWGRYGIRVNVIAPGWYRTKMT 194
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Score = 112 bits (281), Expect = 1e-28
Identities = 53/207 (25%), Positives = 86/207 (41%), Gaps = 17/207 (8%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
R V+ITG GLG+A A G ++ + SSE + + + E +
Sbjct: 5 RVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDA--------- 55
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
+V DV + A V+ FG ID + NNAG P FT E +
Sbjct: 56 ------EVLTTVADVSDEAQVEAYVTATTERFGRIDGFFNNAGIEGKQNPTESFTAAEFD 109
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQ 357
++VS NL G L + +++MR+Q G + G G + Y + K G+ L
Sbjct: 110 KVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASVGGIRGI--GNQSGYAAAKHGVVGLT 167
Query: 358 ASLFKESKRSKVGVHTASPGMVLTDLL 384
+ E R + ++ +PG + T ++
Sbjct: 168 RNSAVEYGRYGIRINAIAPGAIWTPMV 194
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} Length = 276 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Score = 112 bits (281), Expect = 1e-28
Identities = 54/241 (22%), Positives = 91/241 (37%), Gaps = 28/241 (11%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
V+ITG GLG+AL F+ G +V V +S+E + T+ +N
Sbjct: 6 EAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELETDHGDN------------- 52
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
V GI DV D ++ ++ V FG ID I NAG L+ E ++
Sbjct: 53 -------VLGIVGDVRSLEDQKQAASRCVARFGKIDTLIPNAGIWDYSTALVDLPEESLD 105
Query: 298 ----QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGL 353
++ N+ G I + + + +G IF + AG + +Y + K +
Sbjct: 106 AAFDEVFHINVKGYIHAVKACLPALVAS-RGNVIFTISNAGFYPN--GGGPLYTAAKHAI 162
Query: 354 RQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPR 413
L L E V V+ G + +DL S + + + + + R
Sbjct: 163 VGLVRELAFELAP-YVRVNGVGSGGINSDLRGPSSLGMGSKAISTVPLADMLKSVLPIGR 221
Query: 414 I 414
+
Sbjct: 222 M 222
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Score = 111 bits (279), Expect = 2e-28
Identities = 35/209 (16%), Positives = 76/209 (36%), Gaps = 26/209 (12%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ ++TG G+G + + L G +V + + + + EL E
Sbjct: 7 KVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELGE-------------- 52
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
+ + DV AD + G++++ +NNAG + E+
Sbjct: 53 ------RSMFVRHDVSSEADWTLVMAAVQRRLGTLNVLVNNAGILL-PGDMETGRLEDFS 105
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQ 357
+++ N + ++ + M++ GG I NM S A Y ++K + L
Sbjct: 106 RLLKINTESVFIGCQQGIAAMKET--GGSIINMASV-SSWLPIEQYAGYSASKAAVSALT 162
Query: 358 ASLFKE--SKRSKVGVHTASPGMVLTDLL 384
+ + + V++ P + T ++
Sbjct: 163 RAAALSCRKQGYAIRVNSIHPDGIYTPMM 191
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 110 bits (277), Expect = 2e-28
Identities = 45/206 (21%), Positives = 83/206 (40%), Gaps = 27/206 (13%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
R V++TG+ +G+G+ + +G RVV SR+ + V E
Sbjct: 8 RRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECP--------------- 52
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
+ + D+ + ++ A+ G +D+ +NNA +P L+ T E +
Sbjct: 53 ------GIEPVCVDLGDWEATER----ALGSVGPVDLLVNNAAVAL-LQPFLEVTKEAFD 101
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQ 357
+ NL I ++ R + + G I N+ + +VY STK L L
Sbjct: 102 RSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQC-SQRAVTNHSVYCSTKGALDMLT 160
Query: 358 ASLFKESKRSKVGVHTASPGMVLTDL 383
+ E K+ V+ +P +V+T +
Sbjct: 161 KVMALELGPHKIRVNAVNPTVVMTSM 186
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Score = 111 bits (277), Expect = 2e-28
Identities = 40/256 (15%), Positives = 83/256 (32%), Gaps = 47/256 (18%)
Query: 177 PRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSS 236
P +VV+TG+ RG+G L ++ + + + + + + E E
Sbjct: 3 PGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARD---------VEKATE--------- 44
Query: 237 KKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGS--IDIWINNAGTNKGFKPLLQFTNE 294
K++ ++V + V + + GS + + INNAG + +
Sbjct: 45 LKSIKDSRVHVLPLTVTCDKSLDTFVSKVGEIVGSDGLSLLINNAGVLLSYGTNTEPNRA 104
Query: 295 EIEQIVSTNLVGSILCTREAMRVMRDQPKGGHI----------------FNMDGAGSGGS 338
I + + N +L T++ + ++++ + GS
Sbjct: 105 VIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSITDNTSGS 164
Query: 339 STPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNI 398
+ Y +K + +L + K V V PG V T+L + +
Sbjct: 165 AQFPVLAYRMSKAAINMFGRTLAVDLKDDNVLVVNFCPGWVQTNLGGKNAALT------- 217
Query: 399 ICELPETVARTLVPRI 414
E L+
Sbjct: 218 ----VEQSTAELISSF 229
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Score = 110 bits (276), Expect = 4e-28
Identities = 52/205 (25%), Positives = 85/205 (41%), Gaps = 18/205 (8%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
++TG+T G+G +AR G RV V +R E +R T+ EL E
Sbjct: 5 ALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREA--------------- 49
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQI 299
+ G CDV +++ L V +G +D+ +NNAG G + +E +
Sbjct: 50 --GVEADGRTCDVRSVPEIEALVAAVVERYGPVDVLVNNAGRPGG-GATAELADELWLDV 106
Query: 300 VSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQAS 359
V TNL G T++ ++ +G + G A Y ++K G+ +
Sbjct: 107 VETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQGVVHAAPYSASKHGVVGFTKA 166
Query: 360 LFKESKRSKVGVHTASPGMVLTDLL 384
L E R+ + V+ PG V T +
Sbjct: 167 LGLELARTGITVNAVCPGFVETPMA 191
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Score = 110 bits (275), Expect = 5e-28
Identities = 49/238 (20%), Positives = 85/238 (35%), Gaps = 30/238 (12%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ V+ITG+ G+G+A F G R+V +R +
Sbjct: 6 KAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAV---------------- 49
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
+ DV +PA V++ A+ G +D ++ AG + E+ E
Sbjct: 50 ------GAHPVVMDVADPASVERGFAEALAHLGRLDGVVHYAGIT-RDNFHWKMPLEDWE 102
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQ 357
++ NL GS L + A MR++ G + A A Y ++ G+ L
Sbjct: 103 LVLRVNLTGSFLVAKAASEAMREKNPGSIVLT---ASRVYLGNLGQANYAASMAGVVGLT 159
Query: 358 ASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICE----LPETVARTLV 411
+L E R + V+T +PG + T + ++ P VA +
Sbjct: 160 RTLALELGRWGIRVNTLAPGFIETRMTAKVPEKVREKAIAATPLGRAGKPLEVAYAAL 217
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 109 bits (272), Expect = 2e-27
Identities = 54/279 (19%), Positives = 106/279 (37%), Gaps = 34/279 (12%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ V++TG+++G+G+ +A G VVV +RS E+++ V+ E
Sbjct: 15 KKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLE-------------- 60
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
L A IA + + ++ A G +D+ I N TN L +
Sbjct: 61 --LGAASAHYIAGTMEDMTFAEQFVAQAGKLMGGLDMLILNHITN-TSLNLFHDDIHHVR 117
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQ 357
+ + N + ++ T A+ +++ G I + + +G + P+ A Y ++K L
Sbjct: 118 KSMEVNFLSYVVLTVAALPMLKQ--SNGSIVVV-SSLAGKVAYPMVAAYSASKFALDGFF 174
Query: 358 ASLFKE--SKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPRIR 415
+S+ KE R V + G++ T+ + + ++ E A ++
Sbjct: 175 SSIRKEYSVSRVNVSITLCVLGLIDTETAMK----AVSGIVHMQAAPKEECALEIIKGGA 230
Query: 416 -----VVKGSGKAINYLT---PPRILLALVTAWLRRGRW 446
V S L +IL L + R+
Sbjct: 231 LRQEEVYYDSSLWTTLLIRNPSRKILEFLYSTSYNMDRF 269
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Score = 108 bits (270), Expect = 3e-27
Identities = 47/213 (22%), Positives = 74/213 (34%), Gaps = 23/213 (10%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ +++TG RG+G A R +G V V RS+ ++ +
Sbjct: 10 KTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFG----------- 58
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
K CDV V K + G I I NAG + KP + T+E+
Sbjct: 59 -----VKTKAYQCDVSNTDIVTKTIQQIDADLGPISGLIANAGVSV-VKPATELTHEDFA 112
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFN------MDGAGSGGSSTPLTAVYGSTKC 351
+ N+ G R ++ + + G I S + + Y S+K
Sbjct: 113 FVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQSSLNGSLTQVFYNSSKA 172
Query: 352 GLRQLQASLFKESKRSKVGVHTASPGMVLTDLL 384
L L E + + V+ SPG V TD
Sbjct: 173 ACSNLVKGLAAEWASAGIRVNALSPGYVNTDQT 205
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Score = 107 bits (268), Expect = 5e-27
Identities = 47/238 (19%), Positives = 89/238 (37%), Gaps = 20/238 (8%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ ++TG+ +G A A G + + + E++ + E
Sbjct: 6 KVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREK------------- 52
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
+ CDV V + V +FG ID NNAG F P+ + +++
Sbjct: 53 ----GVEARSYVCDVTSEEAVIGTVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFA 108
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQ 357
++++ N+ G+ + R M Q G + AG G P A YG++K + L
Sbjct: 109 RVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVKGP--PNMAAYGTSKGAIIALT 166
Query: 358 ASLFKESKRSKVGVHTASPGMVLTDLLLSGST-IQNKQMFNIICELPETVARTLVPRI 414
+ + + V+ SPG + + +Q K P+ VA+ ++ +
Sbjct: 167 ETAALDLAPYNIRVNAISPGYMGPGFMWERQVELQAKVGSQYFSTDPKVVAQQMIGSV 224
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Score = 104 bits (261), Expect = 5e-26
Identities = 29/205 (14%), Positives = 58/205 (28%), Gaps = 25/205 (12%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
++T G A +G V S + + +E
Sbjct: 3 AIVTNVKHFGGMGSALRLSEAGHTVACHDESFK-------QKDE---------------- 39
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQI 299
L + +L + +G +D+ ++N F+P+ ++ E+
Sbjct: 40 LEAFAETYPQLKPMSEQEPAELIEAVTSAYGQVDVLVSNDIFAPEFQPIDKYAVEDYRGA 99
Query: 300 VSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQAS 359
V + M+ + G IF + Y S + G L +
Sbjct: 100 VEALQIRPFALVNAVASQMKKRKSGHIIFITSATPF--GPWKELSTYTSARAGACTLANA 157
Query: 360 LFKESKRSKVGVHTASPGMVLTDLL 384
L KE + V P + ++
Sbjct: 158 LSKELGEYNIPVFAIGPNYLHSEDS 182
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 275 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Score = 102 bits (255), Expect = 4e-25
Identities = 45/251 (17%), Positives = 88/251 (35%), Gaps = 60/251 (23%)
Query: 175 AGPRNVVITGSTRGLGKALAREFL-LSGDRVVVASRSSESVRMTVTELEENLKEGMMAAG 233
+G ++TG +G+G A+ R+ L VV+ +R + V +L+
Sbjct: 1 SGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAE--------- 51
Query: 234 GSSKKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTN 293
D+ + ++ L +F E+G +D+ +NNAG +
Sbjct: 52 --------GLSPRFHQLDIDDLQSIRALRDFLRKEYGGLDVLVNNAGIA-FKVADPTPFH 102
Query: 294 EEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTA--------- 344
+ E + TN G+ E + +++ Q + ++ ++ + S +P
Sbjct: 103 IQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKFRSETIT 162
Query: 345 ----------------------------VYGSTKCGL----RQLQASLFKESKRSKVGVH 372
YG TK G+ R L ++ K K+ ++
Sbjct: 163 EEELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLN 222
Query: 373 TASPGMVLTDL 383
PG V TD+
Sbjct: 223 ACCPGWVRTDM 233
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Score = 101 bits (253), Expect = 6e-25
Identities = 42/207 (20%), Positives = 85/207 (41%), Gaps = 21/207 (10%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ +ITG+ G+GK +A F +G VVV+ ++++ V E++ GG
Sbjct: 12 KCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQ--------QLGG--- 60
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
+ CD+ ++ L++FA+++ G +DI +NNAG +
Sbjct: 61 ------QAFACRCDITSEQELSALADFAISKLGKVDILVNNAGGGGP--KPFDMPMADFR 112
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQ 357
+ N+ ++ + + GG + + + + Y S+K L
Sbjct: 113 RAYELNVFSFFHLSQ--LVAPEMEKNGGGVILTITSMAAENKNINMTSYASSKAAASHLV 170
Query: 358 ASLFKESKRSKVGVHTASPGMVLTDLL 384
++ + + V+ +PG +LTD L
Sbjct: 171 RNMAFDLGEKNIRVNGIAPGAILTDAL 197
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Score = 100 bits (250), Expect = 1e-24
Identities = 52/241 (21%), Positives = 91/241 (37%), Gaps = 18/241 (7%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ V+TGST G+G +A G +V+ E ++ G+ A G
Sbjct: 5 KVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDA-------AEIEKVRAGLAAQHG--- 54
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
KV D+ + V+ L + AV + G IDI +NN + + F E+ +
Sbjct: 55 -----VKVLYDGADLSKGEAVRGLVDNAVRQMGRIDILVNN-AGIQHTALIEDFPTEKWD 108
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQ 357
I++ NL T A+ M+ Q G I N+ A G ++ + Y + K G+
Sbjct: 109 AILALNLSAVFHGTAAALPHMKKQ-GFGRIINIASA-HGLVASANKSAYVAAKHGVVGFT 166
Query: 358 ASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPRIRVV 417
E+ + + PG V T L+ + ++ + P ++ V
Sbjct: 167 KVTALETAGQGITANAICPGWVRTPLVEKQISALAEKNGVDQETAARELLSEKQPSLQFV 226
Query: 418 K 418
Sbjct: 227 T 227
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Score = 99.8 bits (248), Expect = 2e-24
Identities = 49/207 (23%), Positives = 82/207 (39%), Gaps = 26/207 (12%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ +++TG+ G+G+A F G +V R + V LE
Sbjct: 6 KTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALE--------------- 50
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
A+ + DV +P V+ + A+ EFG + + AG E E
Sbjct: 51 -----AEAIAVVADVSDPKAVEAVFAEALEEFGRLHGVAHFAGVA-HSALSWNLPLEAWE 104
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQ 357
+++ NL GS L R+A V+ + ++ G G+ G A Y + K G+ L
Sbjct: 105 KVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGLGAFG-----LAHYAAGKLGVVGLA 159
Query: 358 ASLFKESKRSKVGVHTASPGMVLTDLL 384
+L E R V V+ PG++ T +
Sbjct: 160 RTLALELARKGVRVNVLLPGLIQTPMT 186
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Length = 272 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Score = 99.8 bits (248), Expect = 3e-24
Identities = 47/207 (22%), Positives = 85/207 (41%), Gaps = 20/207 (9%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ ++TG+ RG+G+ +A E G +V+V +S E E + + G
Sbjct: 19 KVALVTGAGRGIGREMAMELGRRGCKVIVNYANST-------ESAEEVVAAIKKNGS--- 68
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
A + +V D+ ++ AV FG +DI +N+G F + T EE +
Sbjct: 69 ------DAACVKANVGVVEDIVRMFEEAVKIFGKLDIVCSNSGVVS-FGHVKDVTPEEFD 121
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQ 357
++ + N G REA + + G + M + P AVY +K +
Sbjct: 122 RVFTINTRGQFFVAREAYKHLEIG---GRLILMGSITGQAKAVPKHAVYSGSKGAIETFA 178
Query: 358 ASLFKESKRSKVGVHTASPGMVLTDLL 384
+ + K+ V+ +PG + TD+
Sbjct: 179 RCMAIDMADKKITVNVVAPGGIKTDMY 205
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} Length = 261 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Score = 99.0 bits (246), Expect = 6e-24
Identities = 58/207 (28%), Positives = 95/207 (45%), Gaps = 18/207 (8%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ VVITGS+ GLGK++A F +VVV RS E + ++ E + GG
Sbjct: 8 KVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKE-------DEANSVLEEIKKVGG--- 57
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
+ + DV +DV L A+ EFG +D+ INNAG + + +
Sbjct: 58 ------EAIAVKGDVTVESDVINLVQSAIKEFGKLDVMINNAGLE-NPVSSHEMSLSDWN 110
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQ 357
+++ TNL G+ L +REA++ + G + NM PL Y ++K G++ +
Sbjct: 111 KVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSS-VHEKIPWPLFVHYAASKGGMKLMT 169
Query: 358 ASLFKESKRSKVGVHTASPGMVLTDLL 384
+L E + V+ PG + T +
Sbjct: 170 ETLALEYAPKGIRVNNIGPGAINTPIN 196
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 98.2 bits (244), Expect = 7e-24
Identities = 52/234 (22%), Positives = 90/234 (38%), Gaps = 24/234 (10%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ +++G RG+G + R + G +VV E + EL +
Sbjct: 7 KVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELAD-------------- 52
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
+ DV +PA + + AV FG + + +NNAG + + E +
Sbjct: 53 ------AARYVHLDVTQPAQWKAAVDTAVTAFGGLHVLVNNAGIL-NIGTIEDYALTEWQ 105
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQ 357
+I+ NL G L R ++ M++ +G I G + T Y +TK +R L
Sbjct: 106 RILDVNLTGVFLGIRAVVKPMKEAGRGSIINISS--IEGLAGTVACHGYTATKFAVRGLT 163
Query: 358 ASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLV 411
S E S + V++ PG+V T + + E P V+ +V
Sbjct: 164 KSTALELGPSGIRVNSIHPGLVKTPMTDWVPEDIFQTALGRAAE-PVEVSNLVV 216
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 96.8 bits (240), Expect = 3e-23
Identities = 49/252 (19%), Positives = 83/252 (32%), Gaps = 35/252 (13%)
Query: 178 RNVVITGSTRGLGKALAREF---LLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGG 234
V+TG++RG G+ALA + L G ++V++RS +R EL +
Sbjct: 7 AVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDL------ 60
Query: 235 SSKKNLVHAKVAGIACDVCEPADVQK----LSNFAVNEFGSIDIWINNA--GTNKGFKPL 288
KV A D+ A VQ+ + E + INNA + L
Sbjct: 61 ---------KVVLAAADLGTEAGVQRLLSAVRELPRPEGLQRLLLINNAATLGDVSKGFL 111
Query: 289 LQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGS 348
E+ + NL + T + +D P + +Y +
Sbjct: 112 NVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQPYKGWGLYCA 171
Query: 349 TKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLL----LSGSTIQNKQMFNIICEL-- 402
K L L E V V + +PG + D+ + + + +
Sbjct: 172 GKAARDMLYQVLAAEEP--SVRVLSYAPGPLDNDMQQLARETSKDPELRSKLQKLKSDGA 229
Query: 403 ---PETVARTLV 411
T A+ L+
Sbjct: 230 LVDCGTSAQKLL 241
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Score = 97.1 bits (241), Expect = 3e-23
Identities = 48/208 (23%), Positives = 88/208 (42%), Gaps = 21/208 (10%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
++TG ++G+G A+ E G RV SR+ + + + E
Sbjct: 7 TTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREK------------- 53
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEF-GSIDIWINNAGTNKGFKPLLQFTNEEI 296
V G CD+ + KL + F G ++I +NNA K FT ++
Sbjct: 54 ----GLNVEGSVCDLLSRTERDKLMQTVAHVFDGKLNILVNNA-GVVIHKEAKDFTEKDY 108
Query: 297 EQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQL 356
I+ TN + ++ A +++ G IF AG + ++Y ++K + Q+
Sbjct: 109 NIIMGTNFEAAYHLSQIAYPLLKASQNGNVIFLSSIAGFSALPSV--SLYSASKGAINQM 166
Query: 357 QASLFKESKRSKVGVHTASPGMVLTDLL 384
SL E + + V++ +PG++LT L+
Sbjct: 167 TKSLACEWAKDNIRVNSVAPGVILTPLV 194
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} Length = 243 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Score = 95.2 bits (236), Expect = 7e-23
Identities = 54/238 (22%), Positives = 98/238 (41%), Gaps = 27/238 (11%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ ++TG++RG+G+A+A G +V+ + S + L
Sbjct: 5 KIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYLG--------------- 49
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
A G+ +V +PA ++ + EFG +DI +NNAG + ++ +EE
Sbjct: 50 -----ANGKGLMLNVTDPASIESVLEKIRAEFGEVDILVNNAGITRDNLL-MRMKDEEWN 103
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQ 357
I+ TNL ++ MR M + + G I + G+ G A Y + K GL
Sbjct: 104 DIIETNLSSVFRLSKAVMRAMMKK-RHGRIITI-GSVVGTMGNGGQANYAAAKAGLIGFS 161
Query: 358 ASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICE----LPETVARTLV 411
SL +E + V+ +PG + TD+ + S Q + + + +A +
Sbjct: 162 KSLAREVASRGITVNVVAPGFIETDMTRALSDDQRAGILAQVPAGRLGGAQEIANAVA 219
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Score = 94.3 bits (234), Expect = 2e-22
Identities = 59/238 (24%), Positives = 106/238 (44%), Gaps = 24/238 (10%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ ++TG+ RG+G+ +A+ S V+ SR+ +S V E++ + G
Sbjct: 11 KVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIK--------SFGY--- 59
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
+ +G A DV + ++ ++ N + E ++DI +NNAG + L+ N+E E
Sbjct: 60 ------ESSGYAGDVSKKEEISEVINKILTEHKNVDILVNNAGITRDNLF-LRMKNDEWE 112
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQ 357
++ TNL T+ + M + + G I N+ + G + A Y S+K G+
Sbjct: 113 DVLRTNLNSLFYITQPISKRMINN-RYGRIINI-SSIVGLTGNVGQANYSSSKAGVIGFT 170
Query: 358 ASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICE----LPETVARTLV 411
SL KE + V+ +PG + +D+ S K + + I PE VA
Sbjct: 171 KSLAKELASRNITVNAIAPGFISSDMTDKISEQIKKNIISNIPAGRMGTPEEVANLAC 228
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Score = 94.5 bits (234), Expect = 2e-22
Identities = 54/207 (26%), Positives = 90/207 (43%), Gaps = 22/207 (10%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ +ITGS RG+G+A A ++ G RV +A + E+ R T E+
Sbjct: 6 KTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAEI---------------- 49
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
IA DV + A + + ++ +GSIDI +NN P+++ T E +
Sbjct: 50 ----GPAACAIALDVTDQASIDRCVAELLDRWGSIDILVNN-AALFDLAPIVEITRESYD 104
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQ 357
++ + N+ G++ + R M +GG I NM G L VY +TK + L
Sbjct: 105 RLFAINVSGTLFMMQAVARAMIAGGRGGKIINMASQA-GRRGEALVGVYCATKAAVISLT 163
Query: 358 ASLFKESKRSKVGVHTASPGMVLTDLL 384
S R + V+ +PG+V +
Sbjct: 164 QSAGLNLIRHGINVNAIAPGVVDGEHW 190
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Score = 92.9 bits (230), Expect = 5e-22
Identities = 58/236 (24%), Positives = 107/236 (45%), Gaps = 23/236 (9%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
VV+TG++RG+GKA+A +G +V+V S + E + + + A GG
Sbjct: 4 VVVTGASRGIGKAIALSLGKAGCKVLVNYARSA-------KAAEEVSKQIEAYGG----- 51
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQI 299
+ DV + ADV+ + A++ +G+ID+ +NNAG + ++ + +++
Sbjct: 52 ----QAITFGGDVSKEADVEAMMKTAIDAWGTIDVVVNNAGITRDTLL-IRMKKSQWDEV 106
Query: 300 VSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQAS 359
+ NL G LCT+ A ++M + + G I N+ + G A Y + K G+ +
Sbjct: 107 IDLNLTGVFLCTQAATKIMMKK-RKGRIINI-ASVVGLIGNIGQANYAAAKAGVIGFSKT 164
Query: 360 LFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICE----LPETVARTLV 411
+E + V+ PG + +D+ K++ I PE VA +
Sbjct: 165 AAREGASRNINVNVVCPGFIASDMTAKLGEDMEKKILGTIPLGRTGQPENVAGLVE 220
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Score = 92.6 bits (229), Expect = 7e-22
Identities = 49/205 (23%), Positives = 87/205 (42%), Gaps = 19/205 (9%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
++TG+ +G+GKA+A + G V +A + + + +E+ AGG
Sbjct: 4 ALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEIN--------QAGG----- 50
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQI 299
+ DV + V A G D+ +NNAG P+ T E ++++
Sbjct: 51 ----HAVAVKVDVSDRDQVFAAVEQARKTLGGFDVIVNNAGVAP-STPIESITPEIVDKV 105
Query: 300 VSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQAS 359
+ N+ G I + A+ + + GG I N +G P AVY S+K +R L +
Sbjct: 106 YNINVKGVIWGIQAAVEAFKKEGHGGKIINACS-QAGHVGNPELAVYSSSKFAVRGLTQT 164
Query: 360 LFKESKRSKVGVHTASPGMVLTDLL 384
++ + V+ PG+V T +
Sbjct: 165 AARDLAPLGITVNGYCPGIVKTPMW 189
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} Length = 294 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Score = 92.9 bits (230), Expect = 1e-21
Identities = 47/205 (22%), Positives = 76/205 (37%), Gaps = 18/205 (8%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ ITG GLGK + G + V+ASR + ++ T ++
Sbjct: 26 KVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGN---------- 75
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
KV I CDV +P VQ + + G +I INNA N P + + +
Sbjct: 76 ------KVHAIQCDVRDPDMVQNTVSELIKVAGHPNIVINNAAGNF-ISPTERLSPNAWK 128
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQ 357
I L G+ T E + + KG ++ + S + S K G+ +
Sbjct: 129 TITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAETGSGFVVP-SASAKAGVEAMS 187
Query: 358 ASLFKESKRSKVGVHTASPGMVLTD 382
SL E + + + PG + T
Sbjct: 188 KSLAAEWGKYGMRFNVIQPGPIKTK 212
|
| >d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 285 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Score = 91.5 bits (226), Expect = 4e-21
Identities = 53/299 (17%), Positives = 88/299 (29%), Gaps = 46/299 (15%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
V+ITG + G+G LA + + ++ T L E + G
Sbjct: 5 VLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLK-TQGRLWEAARALACPPG------ 57
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQI 299
+ + DV + V + PL + + +
Sbjct: 58 ----SLETLQLDVRDSKSVAAARERVTEGR---VDVLVCNAGLGLLGPLEALGEDAVASV 110
Query: 300 VSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQAS 359
+ N+VG++ + + M+ + G + G G P VY ++K L L S
Sbjct: 111 LDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLMGL--PFNDVYCASKFALEGLCES 168
Query: 360 LFKESKRSKVGVHTASPGMVLTDLL---------------------LSGSTIQNKQMFNI 398
L V + G V T + +KQ+F
Sbjct: 169 LAVLLLPFGVHLSLIECGPVHTAFMEKVLGSPEEVLDRTDIHTFHRFYQYLAHSKQVFRE 228
Query: 399 ICELPETVARTLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWFDDQGRALYAA 457
+ PE VA + ++ + Y T R L LR R D G A
Sbjct: 229 AAQNPEEVAEVFL---TALRAPKPTLRYFTTERFL-----PLLRM-RLDDPSGSNYVTA 278
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Score = 90.1 bits (223), Expect = 4e-21
Identities = 39/207 (18%), Positives = 77/207 (37%), Gaps = 35/207 (16%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ V++ ++RG+G+A+A G V + +R+ EE LK
Sbjct: 5 KGVLVLAASRGIGRAVADVLSQEGAEVTICARN-----------EELLKR---------- 43
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
+G VC D++K + + +DI + NAG K + TNE+ +
Sbjct: 44 --------SGHRYVVC---DLRKDLDLLFEKVKEVDILVLNAGGPK-AGFFDELTNEDFK 91
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQ 357
+ + + + I R + M+++ G + + S + L
Sbjct: 92 EAIDSLFLNMIKIVRNYLPAMKEKGWGRIVAITSFSVISP--IENLYTSNSARMALTGFL 149
Query: 358 ASLFKESKRSKVGVHTASPGMVLTDLL 384
+L E + V+ +PG T+ +
Sbjct: 150 KTLSFEVAPYGITVNCVAPGWTETERV 176
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Score = 90.7 bits (224), Expect = 5e-21
Identities = 44/226 (19%), Positives = 67/226 (29%), Gaps = 26/226 (11%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
VITG R +G ++A G RVVV R SE + L + AA S
Sbjct: 4 AVITGGARRIGHSIAVRLHQQGFRVVVHYRHSE-------GAAQRLVAELNAARAGS--- 53
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQI 299
++ + + + + FG D+ +NNA PLL +
Sbjct: 54 -AVLCKGDLSLSSSLLDCCEDIIDCSFRAFGRCDVLVNNASAYYP-TPLLPGDDTNGAAD 111
Query: 300 VST-----------NLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGS---STPLTAV 345
N V + R R + P V
Sbjct: 112 AKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLCDAMTDLPLPGFCV 171
Query: 346 YGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQ 391
Y K L L + E + V+ +PG+ L + T +
Sbjct: 172 YTMAKHALGGLTRAAALELAPRHIRVNAVAPGLSLLPPAMPQETQE 217
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Score = 88.2 bits (218), Expect = 2e-20
Identities = 43/207 (20%), Positives = 78/207 (37%), Gaps = 28/207 (13%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ +++T + +G+G+A A F G +V+ + E L+E
Sbjct: 7 KVIILTAAAQGIGQAAALAFAREGAKVIATDIN-----------ESKLQE---------- 45
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
K GI V + +++ F NE +D+ N AG +L ++ +
Sbjct: 46 ----LEKYPGIQTRVLDVTKKKQIDQF-ANEVERLDVLFNVAGFV-HHGTVLDCEEKDWD 99
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQ 357
++ N+ L + + M Q G+I NM S VY +TK + L
Sbjct: 100 FSMNLNVRSMYLMIKAFLPKMLAQK-SGNIINMSSVASSVKGVVNRCVYSTTKAAVIGLT 158
Query: 358 ASLFKESKRSKVGVHTASPGMVLTDLL 384
S+ + + + + PG V T L
Sbjct: 159 KSVAADFIQQGIRCNCVCPGTVDTPSL 185
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 237 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 87.1 bits (215), Expect = 5e-20
Identities = 51/238 (21%), Positives = 94/238 (39%), Gaps = 35/238 (14%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
R+V++TG RG+G A+A+ G +V V R S +
Sbjct: 8 RSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAP----------------------- 44
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
+ G+ DV + V + G +++ ++NA L++ T E+ E
Sbjct: 45 -----KGLFGVEVDVTDSDAVDRAFTAVEEHQGPVEVLVSNA-GLSADAFLMRMTEEKFE 98
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQ 357
++++ NL G+ + A R M+ G IF +G G A Y ++K G+ +
Sbjct: 99 KVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGLWGIGNQ--ANYAASKAGVIGMA 156
Query: 358 ASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICE----LPETVARTLV 411
S+ +E ++ V + +PG + TD+ + + I P VA +
Sbjct: 157 RSIARELSKANVTANVVAPGYIDTDMTRALDERIQQGALQFIPAKRVGTPAEVAGVVS 214
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 248 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 80.9 bits (198), Expect = 8e-18
Identities = 39/223 (17%), Positives = 75/223 (33%), Gaps = 35/223 (15%)
Query: 178 RNVVITGSTRGLGKALAREFLL---SGDRVVVASRSSESVRMTVTELEENLKEGMMAAGG 234
+++ITG RGLG L + L + R+ E + ELE+ K
Sbjct: 3 NSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAK----ELEDLAKNHSN---- 54
Query: 235 SSKKNLVHAKVAGIACDVCEPADVQK--LSNFAVNEFGSIDIWINNAGTNKGFKPLLQFT 292
+ + D+ K V + +++ NNAG +
Sbjct: 55 ----------IHILEIDLRNFDAYDKLVADIEGVTKDQGLNVLFNNAGIAPKSARITAVR 104
Query: 293 NEEIEQIVSTNLVGSILCTREAMRVMRDQPKGG------------HIFNMDGAGSGGSST 340
++E+ + TN V I+ + + +++ K + G++
Sbjct: 105 SQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSILGSIQGNTD 164
Query: 341 PLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDL 383
Y ++K L SL + ++ + PG V TD+
Sbjct: 165 GGMYAYRTSKSALNAATKSLSVDLYPQRIMCVSLHPGWVKTDM 207
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 236 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 74.9 bits (183), Expect = 8e-16
Identities = 30/207 (14%), Positives = 56/207 (27%), Gaps = 31/207 (14%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
R V++ G LG + F V
Sbjct: 3 RRVLVYGGRGALGSRCVQAFRARNWWVASIDVVEN------------------------- 37
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
+ + + + E AD + +D + AG G + + +
Sbjct: 38 EEASASVIVKMTDSFTEQADQVTAEVGKLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCD 97
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQ 357
+ ++ S + + A + +++ GA + TP YG K + QL
Sbjct: 98 LMWKQSIWTSTISSHLATKHLKEGGLLTLA----GAKAALDGTPGMIGYGMAKGAVHQLC 153
Query: 358 ASLFKE--SKRSKVGVHTASPGMVLTD 382
SL + S P + T
Sbjct: 154 QSLAGKNSGMPSGAAAIAVLPVTLDTP 180
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 235 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 74.1 bits (181), Expect = 1e-15
Identities = 30/208 (14%), Positives = 60/208 (28%), Gaps = 35/208 (16%)
Query: 179 NVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKK 238
V++ G LG A+ F +G V+ S+
Sbjct: 4 KVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQA----------------------- 40
Query: 239 NLVHAKVAGIACDVCEPADVQKLSNFAVN--EFGSIDIWINNAGTNKGFKPLLQFTNEEI 296
+ + Q + + + +D AG G + +
Sbjct: 41 ----DSNILVDGNKNWTEQEQSILEQTASSLQGSQVDGVFCVAGGWAGGSASSKDFVKNA 96
Query: 297 EQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQL 356
+ ++ ++ S + + A ++ + + GA + TP YG K + L
Sbjct: 97 DLMIKQSVWSSAIAAKLATTHLKPG----GLLQLTGAAAAMGPTPSMIGYGMAKAAVHHL 152
Query: 357 QASLFKE--SKRSKVGVHTASPGMVLTD 382
+SL + V T P + T
Sbjct: 153 TSSLAAKDSGLPDNSAVLTIMPVTLDTP 180
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Score = 73.3 bits (179), Expect = 3e-15
Identities = 51/247 (20%), Positives = 83/247 (33%), Gaps = 44/247 (17%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
R+ ++TG GLG+A A G RVVV E
Sbjct: 2 RSALVTGGASGLGRAAALALKARGYRVVVLDLRREG------------------------ 37
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPL---LQFTNE 294
+ + DV DV++ + E + ++ AG K L E
Sbjct: 38 -----EDLIYVEGDVTREEDVRR-AVARAQEEAPLFAVVSAAGVGLAEKILGKEGPHGLE 91
Query: 295 EIEQIVSTNLVGSILCTREAMRVMRDQP-----KGGHIFNMDGAGSGGSSTPLTAVYGST 349
+++ NL+G+ R A MR+ P + G I N + + A Y ++
Sbjct: 92 SFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNT-ASVAAFEGQIGQAAYAAS 150
Query: 350 KCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICEL-----PE 404
K G+ L +E + V T +PG+ T LL + + PE
Sbjct: 151 KGGVVALTLPAARELAGWGIRVVTVAPGLFDTPLLQGLPEKAKASLAAQVPFPPRLGRPE 210
Query: 405 TVARTLV 411
A ++
Sbjct: 211 EYAALVL 217
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 248 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Score = 72.6 bits (177), Expect = 5e-15
Identities = 39/212 (18%), Positives = 66/212 (31%), Gaps = 21/212 (9%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
VITG GLG A A + G V+ + +L N
Sbjct: 6 LVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKLGNNCVFAPA------- 58
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
+ + A F + I A K T E+ +
Sbjct: 59 --------DVTSEKDVQTALALAKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQ 110
Query: 298 QIVSTNLVGSILCTREAMRVMRDQ-----PKGGHIFNMDGAGSGGSSTPLTAVYGSTKCG 352
+++ NL+G+ R M + G I N + + A Y ++K G
Sbjct: 111 RVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINT-ASVAAFEGQVGQAAYSASKGG 169
Query: 353 LRQLQASLFKESKRSKVGVHTASPGMVLTDLL 384
+ + + ++ + V T +PG+ T LL
Sbjct: 170 IVGMTLPIARDLAPIGIRVMTIAPGLFGTPLL 201
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Score = 69.7 bits (169), Expect = 7e-14
Identities = 25/186 (13%), Positives = 52/186 (27%), Gaps = 8/186 (4%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTEL--EENLKEGMMAAGGSSK 237
++TG+ + LG+++A G V + S + ++ + S
Sbjct: 5 ALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSN 64
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
A + V +L +G D+ +NNA + PLL+ + E
Sbjct: 65 VATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFY-PTPLLRNDEDGHE 123
Query: 298 QI-----VSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCG 352
+ + + + G + + + V T
Sbjct: 124 PCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGTPAKHRGTNYSIINMVDAMTNQP 183
Query: 353 LRQLQA 358
L
Sbjct: 184 LLGYTI 189
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Score = 69.1 bits (168), Expect = 8e-14
Identities = 34/207 (16%), Positives = 66/207 (31%), Gaps = 27/207 (13%)
Query: 178 RNVVITG--STRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGS 235
+ ++ G + R LG A+A + +G V ++ ++ L ++ A GG+
Sbjct: 9 KKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAER--------LRPEAEKLAEALGGA 60
Query: 236 SKKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGF---KPLLQFT 292
DV + ++ L FG +D ++ +
Sbjct: 61 LLFR----------ADVTQDEELDALFAGVKEAFGGLDYLVHAIAFAPREAMEGRYIDTR 110
Query: 293 NEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCG 352
++ + + + R A ++ +GG I + + P V K
Sbjct: 111 RQDWLLALEVSAYSLVAVARRAEPLL---REGGGIVTL-TYYASEKVVPKYNVMAIAKAA 166
Query: 353 LRQLQASLFKESKRSKVGVHTASPGMV 379
L L E V V+ S G V
Sbjct: 167 LEASVRYLAYELGPKGVRVNAISAGPV 193
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Score = 59.5 bits (143), Expect = 1e-10
Identities = 18/154 (11%), Positives = 41/154 (26%), Gaps = 43/154 (27%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+VI+G G+G A + +G ++V V
Sbjct: 2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEV----------------------- 38
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEF-GSIDIWINNAGTNKGFKPLLQFTNEEI 296
D+ ++ + + +D + AG L + +
Sbjct: 39 -----------IADLSTAEGRKQAIADVLAKCSKGMDGLVLCAG--------LGPQTKVL 79
Query: 297 EQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNM 330
+VS N G+ + ++ + +
Sbjct: 80 GNVVSVNYFGATELMDAFLPALKKGHQPAAVVIS 113
|
| >d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 329 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Score = 59.9 bits (143), Expect = 2e-10
Identities = 29/222 (13%), Positives = 65/222 (29%), Gaps = 22/222 (9%)
Query: 180 VVITG--STRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
I G T G G +A+E +++ M+
Sbjct: 5 CFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKM 64
Query: 238 KNLVHAKVA---------------GIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTN 282
L ++ + ++ ++N ++G I++ +++
Sbjct: 65 NILDMLPFDASFDTANDIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANA 124
Query: 283 KGF-KPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTP 341
K K LL + + +S + I + + +M+ Q I ++ S
Sbjct: 125 KEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVNIMKPQS---SIISLTYHASQKVVPG 181
Query: 342 LTAVYGSTKCGLRQLQASLFKE-SKRSKVGVHTASPGMVLTD 382
S K L L + + ++T S G + +
Sbjct: 182 YGGGMSSAKAALESDTRVLAYHLGRNYNIRINTISAGPLKSR 223
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Score = 57.2 bits (137), Expect = 8e-10
Identities = 30/211 (14%), Positives = 66/211 (31%), Gaps = 28/211 (13%)
Query: 178 RNVVITG--STRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGS 235
+ +++TG S + +A+ G + ++ +L+ ++E G
Sbjct: 6 KRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND--------KLKGRVEEFAAQLG-- 55
Query: 236 SKKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKP----LLQF 291
+ CDV E A + + + D ++++ G G + +
Sbjct: 56 --------SDIVLQCDVAEDASIDTMFAELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAV 107
Query: 292 TNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKC 351
T E + + + + ++ G + + G + P V G K
Sbjct: 108 TREGFKIAHDISSYSFVAMAKACRSML---NPGSALLTLSYLG-AERAIPNYNVMGLAKA 163
Query: 352 GLRQLQASLFKESKRSKVGVHTASPGMVLTD 382
L + V V+ S G + T
Sbjct: 164 SLEANVRYMANAMGPEGVRVNAISAGPIRTL 194
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} Length = 191 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Score = 54.9 bits (131), Expect = 2e-09
Identities = 21/183 (11%), Positives = 40/183 (21%), Gaps = 32/183 (17%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237
+ V+ T +G A G VV+ R + + + +
Sbjct: 24 KKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNK-------------- 69
Query: 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE 297
KV A + + A + L +
Sbjct: 70 ----RFKVNVTAAETADDASRAEA-------VKGAHFVFTAGAI-----GLELLPQAAWQ 113
Query: 298 QIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQ 357
S +V D G + G + G+ + + +L
Sbjct: 114 NESSIEIVADYNAQPPLGIGGIDATDKGKEYG--GKRAFGALGIGGLKLKLHRACIAKLF 171
Query: 358 ASL 360
S
Sbjct: 172 ESS 174
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 212 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 52.4 bits (124), Expect = 2e-08
Identities = 25/200 (12%), Positives = 47/200 (23%), Gaps = 20/200 (10%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
V + G T LGK LA G +VV SR E E + +
Sbjct: 3 VALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASI--------- 53
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQI 299
+ A+ ++ + +ID + + K ++
Sbjct: 54 --------TGMKNEDAAEACDIAVLTIPWEHAIDTARDLKNILR-EKIVVSPLVPVSRGA 104
Query: 300 VSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQAS 359
V+ + + + A + CG
Sbjct: 105 KGFTYSSERSAAEIVAEVLESEKVVSALHTIPAARFAN--LDEKFDWDVPVCGDDDESKK 162
Query: 360 LFKESKRSKVGVHTASPGMV 379
+ G+ G +
Sbjct: 163 VVMSLISEIDGLRPLDAGPL 182
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Score = 52.0 bits (123), Expect = 6e-08
Identities = 30/242 (12%), Positives = 63/242 (26%), Gaps = 27/242 (11%)
Query: 178 RNVVITG--STRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGS 235
+ +I G + + + +A+ G + +ES+ V + +
Sbjct: 6 KKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYL-NESLEKRVRPIAQE----------- 53
Query: 236 SKKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEE 295
DV + + L N + GS+D +++
Sbjct: 54 ------LNSPYVYELDVSKEEHFKSLYNSVKKDLGSLDFIVHSVAFAPKEALEGSLLETS 107
Query: 296 IEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQ 355
+ + + G + + GS V G K L
Sbjct: 108 KSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTKYMAH-YNVMGLAKAALES 166
Query: 356 LQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICE------LPETVART 409
L + + + V+ S G + T + + +N I E V
Sbjct: 167 AVRYLAVDLGKHHIRVNALSAGPIRTLASSGIADFRMILKWNEINAPLRKNVSLEEVGNA 226
Query: 410 LV 411
+
Sbjct: 227 GM 228
|
| >d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Score = 50.8 bits (120), Expect = 1e-07
Identities = 32/232 (13%), Positives = 55/232 (23%), Gaps = 25/232 (10%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN 239
V++TG T G+G +AR G ++ S EL L+
Sbjct: 12 VLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGA--------- 62
Query: 240 LVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQI 299
+ +A + T E IE+
Sbjct: 63 ------RTTVAACDVTDRESVRELLGGIGDDVPLSAVFHAAATLDDGTVDTLTGERIERA 116
Query: 300 VSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQAS 359
++G+ + F + + + P Y L L
Sbjct: 117 SRAKVLGARNLHE------LTRELDLTAFVLFSSFASAFGAPGLGGYAPGNAYLDGLAQQ 170
Query: 360 LFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLV 411
+ + G + G + +I PET R L
Sbjct: 171 RRSDGLP----ATAVAWGTWAGSGMAEGPVADRFRRHGVIEMPPETACRALQ 218
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} Length = 297 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Score = 47.4 bits (111), Expect = 2e-06
Identities = 25/177 (14%), Positives = 52/177 (29%), Gaps = 3/177 (1%)
Query: 178 RNVVITG--STRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENL-KEGMMAAGG 234
+ I G G G A+A+ +G ++V + + + ++ G
Sbjct: 9 KRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRRGKFDQSRVLPDGS 68
Query: 235 SSKKNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNE 294
+ V+ A P DV+ +A + ++ + G +L +
Sbjct: 69 LMEIKKVYPLDAVFDNPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLA 128
Query: 295 EIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKC 351
++ L S A+ + GG+S LT +
Sbjct: 129 NGPEVSKPLLETSRKGYLAAISASSYSFVSLLSHFLPIMNPGGASISLTYIASERII 185
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Score = 40.9 bits (94), Expect = 2e-04
Identities = 6/46 (13%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 178 RNVVITG--STRGLGKALAREFLLSGDRVVVASRSSESVRMTVTEL 221
+ ++++G + + +AR G ++V+ + +T+
Sbjct: 7 KRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITDR 52
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} Length = 350 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Score = 40.4 bits (93), Expect = 4e-04
Identities = 8/38 (21%), Positives = 15/38 (39%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVR 215
+ + + G+T G +L R G V S + +
Sbjct: 4 KTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLI 41
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 205 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.7 bits (86), Expect = 0.002
Identities = 9/39 (23%), Positives = 16/39 (41%)
Query: 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRM 216
+ + I G+T G + + +G V V R S +
Sbjct: 4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPS 42
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Score = 37.4 bits (85), Expect = 0.003
Identities = 10/48 (20%), Positives = 18/48 (37%)
Query: 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKE 227
V+I G T +GK + + G V R + ++ K+
Sbjct: 6 VLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQ 53
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 512 | |||
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 100.0 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 100.0 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 100.0 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 100.0 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 100.0 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 100.0 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 100.0 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 100.0 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 100.0 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 100.0 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 100.0 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 100.0 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 100.0 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 100.0 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 100.0 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 100.0 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 100.0 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 100.0 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 100.0 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 100.0 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 100.0 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 100.0 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 100.0 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 100.0 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 100.0 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 100.0 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 100.0 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 100.0 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 100.0 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 100.0 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 100.0 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 100.0 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 100.0 | |
| d1zmta1 | 252 | Halohydrin dehalogenase HheC {Agrobacterium tumefa | 100.0 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 100.0 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 100.0 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 100.0 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 100.0 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 100.0 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 100.0 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 100.0 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 100.0 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 100.0 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 100.0 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 100.0 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 100.0 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 100.0 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 100.0 | |
| d1jtva_ | 285 | Human estrogenic 17beta-hydroxysteroid dehydrogena | 100.0 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 100.0 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 100.0 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 100.0 | |
| d1snya_ | 248 | Carbonyl reductase sniffer {Fruit fly (Drosophila | 100.0 | |
| d1yo6a1 | 250 | Putative carbonyl reductase sniffer {Caenorhabditi | 100.0 | |
| d1e7wa_ | 284 | Dihydropteridin reductase (pteridine reductase) {L | 100.0 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 100.0 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 100.0 | |
| d1uh5a_ | 329 | Enoyl-ACP reductase {Malaria parasite (Plasmodium | 100.0 | |
| d1d7oa_ | 297 | Enoyl-ACP reductase {Oil seed rape (Brassica napus | 100.0 | |
| d1dhra_ | 236 | Dihydropteridin reductase (pteridine reductase) {R | 100.0 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 100.0 | |
| d1mxha_ | 266 | Dihydropteridin reductase (pteridine reductase) {T | 100.0 | |
| d1uaya_ | 241 | Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t | 100.0 | |
| d1ooea_ | 235 | Dihydropteridin reductase (pteridine reductase) {N | 99.98 | |
| d1fjha_ | 257 | 3-alpha-hydroxysteroid dehydrogenase {Comamonas te | 99.97 | |
| d2fr1a1 | 259 | Erythromycin synthase, eryAI, 1st ketoreductase mo | 99.96 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 99.74 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 99.62 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 99.54 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 99.51 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 99.49 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 99.49 | |
| d1z45a2 | 347 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 99.48 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 99.44 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 99.44 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 99.43 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 99.39 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 99.36 | |
| d1kewa_ | 361 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 99.35 | |
| d1e6ua_ | 315 | GDP-4-keto-6-deoxy-d-mannose epimerase/reductase ( | 99.34 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 99.33 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 99.32 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 99.3 | |
| d1oc2a_ | 346 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 99.27 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 99.26 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 99.24 | |
| d1gy8a_ | 383 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 99.24 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 99.23 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 99.21 | |
| d1r6da_ | 322 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces | 99.07 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 98.94 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 98.9 | |
| d2a35a1 | 212 | Hypothetical protein PA4017 {Pseudomonas aeruginos | 98.84 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 98.75 | |
| d1n2sa_ | 298 | dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S | 98.74 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 98.74 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 98.59 | |
| d1eq2a_ | 307 | ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric | 98.47 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 97.58 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 97.57 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 97.49 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 97.37 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 97.31 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 97.24 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 97.19 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 97.18 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 97.17 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 97.13 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 97.06 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 96.98 | |
| d1o8ca2 | 77 | Hypothetical protein YhdH {Escherichia coli [TaxId | 96.94 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 96.92 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 96.91 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 96.9 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 96.81 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 96.78 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 96.76 | |
| d1u7za_ | 223 | Coenzyme A biosynthesis bifunctional protein CoaBC | 96.6 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 96.6 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 96.5 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 96.31 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 96.29 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 96.28 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 96.26 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 96.18 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 96.16 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 96.11 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 96.1 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 96.1 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 96.03 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 96.03 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 96.02 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 95.94 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 95.9 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 95.9 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 95.88 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 95.87 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 95.75 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 95.75 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 95.69 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 95.67 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 95.63 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 95.62 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 95.6 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 95.36 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 95.35 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 95.33 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 95.28 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 95.26 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 95.19 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 95.13 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 95.05 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 94.97 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 94.95 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 94.95 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 94.87 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 94.81 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 94.73 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 94.72 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 94.62 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 94.6 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 94.55 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 94.48 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 94.46 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 94.15 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 93.47 | |
| d1p9oa_ | 290 | Phosphopantothenoylcysteine synthetase {Human (Hom | 93.17 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 92.89 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 92.4 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 92.3 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 92.14 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 91.85 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 91.77 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 91.04 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 90.8 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 90.68 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 90.48 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 90.16 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 90.1 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 90.03 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 89.8 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 89.78 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 89.44 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 89.38 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 89.29 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 89.01 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 88.99 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 88.64 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 88.05 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 87.86 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 87.75 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 87.73 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 87.72 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 87.7 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 87.65 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 87.59 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 87.56 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 87.52 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 87.43 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 87.34 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 87.19 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 86.62 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 86.6 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 86.48 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 86.46 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 86.43 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 86.35 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 86.3 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 86.1 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 86.04 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 85.83 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 85.57 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 84.97 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 84.92 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 84.81 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 84.18 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 84.16 | |
| d2fr1a2 | 209 | Erythromycin synthase, eryAI, 1st ketoreductase mo | 83.99 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 83.62 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 83.51 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 82.92 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 82.78 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 82.7 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 82.64 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 82.47 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 82.4 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 81.13 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 81.11 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 81.07 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 80.38 |
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=2.2e-48 Score=382.42 Aligned_cols=249 Identities=26% Similarity=0.369 Sum_probs=221.9
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
++++||++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+. .+.++.+++||+
T Consensus 1 f~l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~----------------~g~~~~~~~~Dv 64 (251)
T d1vl8a_ 1 FDLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEK----------------YGVETMAFRCDV 64 (251)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH----------------HCCCEEEEECCT
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHH----------------hCCcEEEEEccC
Confidence 4789999999999999999999999999999999999999999998888664 356889999999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|+++++++++++.+++|+||+||||||+.. ..++.+++.|+|++++++|+.++++++|+++|+|+++ +.|+||+++|
T Consensus 65 ~~~~~v~~~~~~~~~~~g~iDiLVnnAG~~~-~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~G~Ii~i~S 142 (251)
T d1vl8a_ 65 SNYEEVKKLLEAVKEKFGKLDTVVNAAGINR-RHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRES-DNPSIINIGS 142 (251)
T ss_dssp TCHHHHHHHHHHHHHHHSCCCEEEECCCCCC-CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTC-SSCEEEEECC
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCCCC-CCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhccccc-cccccccccc
Confidence 9999999999999999999999999999876 7899999999999999999999999999999999987 6789999998
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhcc
Q 010380 333 AGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVP 412 (512)
Q Consensus 333 ~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~ 412 (512)
..+...+.++..+|++||+|+++|+++|+.|++++|||||+|+||+|+|+|........ +. ..+...+.+++
T Consensus 143 ~~~~~~~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~i~T~~~~~~~~~~--~~------~~~~~~~~pl~ 214 (251)
T d1vl8a_ 143 LTVEEVTMPNISAYAASKGGVASLTKALAKEWGRYGIRVNVIAPGWYRTKMTEAVFSDP--EK------LDYMLKRIPLG 214 (251)
T ss_dssp GGGTCCCSSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSTTTHHHHTCH--HH------HHHHHHTCTTS
T ss_pred chhccccCccccchHHHHHhHHHHHHHHHHHhcccCeEEEEEeeCcccCHHHHhccCCH--HH------HHHHHhcCCCC
Confidence 74456677889999999999999999999999999999999999999999974321110 00 12234456789
Q ss_pred ccccchhhhhhhhhcCChHHHHHHHHHHhccCccc
Q 010380 413 RIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWF 447 (512)
Q Consensus 413 r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~ 447 (512)
|+..|+|+++++.||++++..+.++..+..||+|.
T Consensus 215 R~~~pedvA~~v~fL~S~~a~~itG~~i~vDGG~t 249 (251)
T d1vl8a_ 215 RTGVPEDLKGVAVFLASEEAKYVTGQIIFVDGGWT 249 (251)
T ss_dssp SCBCGGGGHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred CCCCHHHHHHHHHHHhCchhCCCcCcEEEeCcCee
Confidence 99999999999999999999999999999999884
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.2e-48 Score=381.33 Aligned_cols=248 Identities=21% Similarity=0.334 Sum_probs=223.4
Q ss_pred cccCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEE
Q 010380 170 EEHCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIA 249 (512)
Q Consensus 170 ~~~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~ 249 (512)
.+.|+++||++|||||++|||+++|++|+++|++|++++|++++++++.+++++ .+.++.+++
T Consensus 4 ~d~m~L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~-----------------~g~~~~~~~ 66 (255)
T d1fmca_ 4 SDNLRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQ-----------------LGGQAFACR 66 (255)
T ss_dssp GGGGCCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHH-----------------TTCCEEEEE
T ss_pred CCCCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHH-----------------cCCcEEEEE
Confidence 346789999999999999999999999999999999999999999999999876 456899999
Q ss_pred ccCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEe
Q 010380 250 CDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFN 329 (512)
Q Consensus 250 ~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~ 329 (512)
||++|+++++++++++.+++|+||+||||||+.. ..++ +.+.++|++++++|+.|+++++|+++|+|+++ ++|+||+
T Consensus 67 ~Dvs~~~~~~~~~~~~~~~~g~iDilvnnAG~~~-~~~~-e~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~g~Ii~ 143 (255)
T d1fmca_ 67 CDITSEQELSALADFAISKLGKVDILVNNAGGGG-PKPF-DMPMADFRRAYELNVFSFFHLSQLVAPEMEKN-GGGVILT 143 (255)
T ss_dssp CCTTCHHHHHHHHHHHHHHHSSCCEEEECCCCCC-CCCT-TCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEE
T ss_pred ccCCCHHHHHHHHHHHHHHcCCCCEeeeCCcCCC-CCcc-cCCHHHHHHHHHHHHHHhhhhHHHHHhhhccc-ccccccc
Confidence 9999999999999999999999999999999876 4555 78999999999999999999999999999987 6789999
Q ss_pred ecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHH
Q 010380 330 MDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVART 409 (512)
Q Consensus 330 vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~ 409 (512)
+||. ++..+.|+.++|++||+|+.+|+++|+.|++++|||||+|+||+|+||+......... ......+.
T Consensus 144 isS~-~~~~~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~e~---------~~~~~~~~ 213 (255)
T d1fmca_ 144 ITSM-AAENKNINMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSVITPEI---------EQKMLQHT 213 (255)
T ss_dssp ECCG-GGTCCCTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTTCCHHH---------HHHHHHTC
T ss_pred cccc-chhccccccccchhHHHHHHHHHHHHHHHhCccCeEEEEeeeCcCcChHhhccCCHHH---------HHHHHhcC
Confidence 9998 6788899999999999999999999999999999999999999999998754332111 11234457
Q ss_pred hccccccchhhhhhhhhcCChHHHHHHHHHHhccCccc
Q 010380 410 LVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWF 447 (512)
Q Consensus 410 ~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~ 447 (512)
+++|+..|+|+++++.||+++...+.++..+..||+|.
T Consensus 214 pl~R~g~pedvA~~v~fL~S~~s~~itG~~i~vDGG~~ 251 (255)
T d1fmca_ 214 PIRRLGQPQDIANAALFLCSPAASWVSGQILTVSGGGV 251 (255)
T ss_dssp SSCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTSC
T ss_pred CCCCCcCHHHHHHHHHHHhCchhcCCcCCEEEECcCcc
Confidence 89999999999999999999999999999999999884
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=100.00 E-value=2.2e-48 Score=383.92 Aligned_cols=250 Identities=24% Similarity=0.318 Sum_probs=221.8
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
+++||++|||||++|||+++|+.|+++|++|++++|+.++++++.+++.+.. .+.++.+++||++
T Consensus 1 rl~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~---------------~~~~~~~~~~Dvt 65 (258)
T d1iy8a_ 1 RFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETA---------------PDAEVLTTVADVS 65 (258)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHC---------------TTCCEEEEECCTT
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhC---------------CCCeEEEEeccCC
Confidence 4789999999999999999999999999999999999999999888887642 2468999999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
|+++++++++++.+++|+||+||||||+..+..++.+++.++|++++++|+.|+++++|+++|+|+++ ++|+||++||.
T Consensus 66 ~~~~v~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~-~~G~Ii~isS~ 144 (258)
T d1iy8a_ 66 DEAQVEAYVTATTERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQ-GSGMVVNTASV 144 (258)
T ss_dssp SHHHHHHHHHHHHHHHSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEECCG
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCcccccCCchhhhhhhHHHHHhhhhccchhhhhhhhHhhhhhh-cCCCCcccccH
Confidence 99999999999999999999999999987656789999999999999999999999999999999987 68999999998
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHH-----HHH
Q 010380 334 GSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPET-----VAR 408 (512)
Q Consensus 334 ~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~-----vA~ 408 (512)
++..+.|+..+|++||+|+.+|+++|+.|++++|||||+|+||+|+|||...... ......+++ ...
T Consensus 145 -~~~~~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~i~PG~v~T~~~~~~~~-------~~~~~~~~~~~~~~~~~ 216 (258)
T d1iy8a_ 145 -GGIRGIGNQSGYAAAKHGVVGLTRNSAVEYGRYGIRINAIAPGAIWTPMVENSMK-------QLDPENPRKAAEEFIQV 216 (258)
T ss_dssp -GGTSBCSSBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHHHHH-------HHCTTCHHHHHHHHHTT
T ss_pred -hhccCCCCchHHHHHHHHHHHHHHHHHHHhCccCceEEEEeeCcccCHHHHHHHh-------hcCcccHHHHHHHHHhc
Confidence 6788999999999999999999999999999999999999999999999743211 111112222 333
Q ss_pred HhccccccchhhhhhhhhcCChHHHHHHHHHHhccCccc
Q 010380 409 TLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWF 447 (512)
Q Consensus 409 ~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~ 447 (512)
.+++|+..|+|+++++.||++++..+.++..+..||+|.
T Consensus 217 ~pl~R~~~p~dvA~~v~fL~S~~s~~itG~~i~VDGG~s 255 (258)
T d1iy8a_ 217 NPSKRYGEAPEIAAVVAFLLSDDASYVNATVVPIDGGQS 255 (258)
T ss_dssp CTTCSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTTT
T ss_pred CCCCCCcCHHHHHHHHHHHhCchhcCCcCceEEcCcchh
Confidence 578899999999999999999999899999998988874
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=100.00 E-value=9.7e-48 Score=379.50 Aligned_cols=252 Identities=23% Similarity=0.333 Sum_probs=224.8
Q ss_pred cCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEcc
Q 010380 172 HCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACD 251 (512)
Q Consensus 172 ~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~D 251 (512)
.++|+||++|||||++|||+++|+.|+++|++|++++|++++++++.+++.+ .+.++.++.||
T Consensus 3 ~f~L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~-----------------~g~~~~~~~~D 65 (259)
T d2ae2a_ 3 RWNLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRS-----------------KGFKVEASVCD 65 (259)
T ss_dssp TTCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-----------------TTCEEEEEECC
T ss_pred CcCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh-----------------cCCCceEEEee
Confidence 4689999999999999999999999999999999999999999999988876 46788999999
Q ss_pred CCChhhHHHHHHHHHHHcC-CCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEee
Q 010380 252 VCEPADVQKLSNFAVNEFG-SIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNM 330 (512)
Q Consensus 252 ltd~~sv~~~~~~i~~~~g-~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~v 330 (512)
++|+++++++++++.++++ ++|+||||||+.. ..++.+.+.|+|++++++|+.++++++|+++|+|+++ +.|+||++
T Consensus 66 v~~~~~v~~~~~~~~~~~~~~idilvnnAG~~~-~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~G~Ii~i 143 (259)
T d2ae2a_ 66 LSSRSERQELMNTVANHFHGKLNILVNNAGIVI-YKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKAS-ERGNVVFI 143 (259)
T ss_dssp TTCHHHHHHHHHHHHHHTTTCCCEEEECCCCCC-CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-SSEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCceEEEECCceec-cCccccCCHHHHHHHHhcccceeEEEEeeccchhhhh-cccccccc
Confidence 9999999999999999987 7999999999987 6889999999999999999999999999999999987 67999999
Q ss_pred cCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHh
Q 010380 331 DGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTL 410 (512)
Q Consensus 331 SS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~ 410 (512)
||. ++..+.|+...|++||+|+++|+++|+.|++++|||||+|+||+|+|||........... .. ..+...+.+
T Consensus 144 sS~-~~~~~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~--~~---~~~~~~~~p 217 (259)
T d2ae2a_ 144 SSV-SGALAVPYEAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATSLVEMTIQDPEQK--EN---LNKLIDRCA 217 (259)
T ss_dssp CCG-GGTSCCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSHHHHHHTTSHHHH--HH---HHHHHHTST
T ss_pred ccc-ccccccccccchHHHHHHHHHHHHHHHHHhCcCceEEEEeeeCcccCHHHHhhhhchhhH--HH---HHHHHhcCC
Confidence 998 678889999999999999999999999999999999999999999999864322111100 00 123345678
Q ss_pred ccccccchhhhhhhhhcCChHHHHHHHHHHhccCcccc
Q 010380 411 VPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWFD 448 (512)
Q Consensus 411 l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~~ 448 (512)
++|+..|+|+++++.||+++...+.++..+..||+|..
T Consensus 218 l~R~g~pedvA~~v~fL~S~~s~~itG~~i~VDGG~~a 255 (259)
T d2ae2a_ 218 LRRMGEPKELAAMVAFLCFPAASYVTGQIIYVDGGLMA 255 (259)
T ss_dssp TCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGG
T ss_pred CCCCcCHHHHHHHHHHHhCchhCCCcCcEEEECCCeEe
Confidence 99999999999999999999999999999999999864
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=100.00 E-value=5.7e-48 Score=379.44 Aligned_cols=247 Identities=22% Similarity=0.308 Sum_probs=220.2
Q ss_pred ccCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEc
Q 010380 171 EHCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIAC 250 (512)
Q Consensus 171 ~~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~ 250 (512)
..+++++|++|||||++|||+++|++|+++|++|++++|++++++++.+++++ .+.++.++.+
T Consensus 4 ~~f~lenKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~-----------------~g~~~~~~~~ 66 (251)
T d2c07a1 4 YYYCGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKS-----------------FGYESSGYAG 66 (251)
T ss_dssp CCCCCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHT-----------------TTCCEEEEEC
T ss_pred cccCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHh-----------------cCCcEEEEEc
Confidence 35678999999999999999999999999999999999999999999888865 4568999999
Q ss_pred cCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEee
Q 010380 251 DVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNM 330 (512)
Q Consensus 251 Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~v 330 (512)
|++|+++++++++++.+++|+||+||||||... ..++.+.+.++|++++++|+.++++++|+++|+|+++ ++|+||++
T Consensus 67 Dvt~~~~v~~~~~~~~~~~g~iDilvnnag~~~-~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~G~IVni 144 (251)
T d2c07a1 67 DVSKKEEISEVINKILTEHKNVDILVNNAGITR-DNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINN-RYGRIINI 144 (251)
T ss_dssp CTTCHHHHHHHHHHHHHHCSCCCEEEECCCCCC-CCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHH-TCEEEEEE
T ss_pred cCCCHHHHHHHHHHHHHhcCCceeeeecccccc-ccccccccHHHHhhhheeeehhhhhhhhhcCcccccC-CCeEEEEE
Confidence 999999999999999999999999999999987 6889999999999999999999999999999999987 67999999
Q ss_pred cCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHh
Q 010380 331 DGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTL 410 (512)
Q Consensus 331 SS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~ 410 (512)
||. ++..+.|+..+|++||+|+++|+++|+.|++++|||||+|+||+|+|+|......... .+.....+
T Consensus 145 sS~-~~~~~~~~~~~Y~asKaal~~ltr~lA~el~~~gIrVN~V~PG~v~T~~~~~~~~~~~----------~~~~~~~p 213 (251)
T d2c07a1 145 SSI-VGLTGNVGQANYSSSKAGVIGFTKSLAKELASRNITVNAIAPGFISSDMTDKISEQIK----------KNIISNIP 213 (251)
T ss_dssp CCT-HHHHCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC-----CCHHHH----------HHHHTTCT
T ss_pred CCH-HhcCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEccCCEecccccccCHHHH----------HHHHhcCC
Confidence 998 6778889999999999999999999999999999999999999999999765332111 22234567
Q ss_pred ccccccchhhhhhhhhcCChHHHHHHHHHHhccCccc
Q 010380 411 VPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWF 447 (512)
Q Consensus 411 l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~ 447 (512)
++|+..|+|++.++.||++++..+.++..+..||+|.
T Consensus 214 l~R~~~pedvA~~v~fL~S~~s~~itG~~i~vDGG~s 250 (251)
T d2c07a1 214 AGRMGTPEEVANLACFLSSDKSGYINGRVFVIDGGLS 250 (251)
T ss_dssp TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTSC
T ss_pred CCCCcCHHHHHHHHHHHhCchhCCCcCcEEEECCCcC
Confidence 8999999999999999999999899999998888874
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=100.00 E-value=1.5e-47 Score=378.19 Aligned_cols=254 Identities=21% Similarity=0.236 Sum_probs=214.8
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcC-hhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 175 AGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRS-SESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 175 l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~-~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
|+||++|||||++|||+++|++|+++|++|++++|+ .+.++++.+++.+. .+.++.+++||++
T Consensus 2 L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~----------------~g~~~~~~~~Dv~ 65 (260)
T d1x1ta1 2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQ----------------HGVKVLYDGADLS 65 (260)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHH----------------HTSCEEEECCCTT
T ss_pred CCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHh----------------cCCcEEEEECCCC
Confidence 789999999999999999999999999999999997 46677777777653 3568999999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
|+++++++++++.+++|+||+||||||+.. ..++.+.+.++|+++|++|+.++++++|+++|+|+++ +.|+||++||.
T Consensus 66 ~~~~v~~~~~~~~~~~G~iDiLVnnAG~~~-~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~-~~G~Iv~isS~ 143 (260)
T d1x1ta1 66 KGEAVRGLVDNAVRQMGRIDILVNNAGIQH-TALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQ-GFGRIINIASA 143 (260)
T ss_dssp SHHHHHHHHHHHHHHHSCCSEEEECCCCCC-CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCG
T ss_pred CHHHHHHHHHHHHHHhCCCcEEEeeccccc-CCchhhhhHHhhhhhhhccccccccccchhhhhHhhc-CCceEeecccc
Confidence 999999999999999999999999999987 6899999999999999999999999999999999987 67999999998
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhh--cCCHHHHHHHhc
Q 010380 334 GSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNII--CELPETVARTLV 411 (512)
Q Consensus 334 ~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~--~~~pe~vA~~~l 411 (512)
++..+.|+.++|++||+|+++|+++|+.|++++||+||+|+||+|+|||................ ..........++
T Consensus 144 -~~~~~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pl 222 (260)
T d1x1ta1 144 -HGLVASANKSAYVAAKHGVVGFTKVTALETAGQGITANAICPGWVRTPLVEKQISALAEKNGVDQETAARELLSEKQPS 222 (260)
T ss_dssp -GGTSCCTTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC------------------------CHHHHCTT
T ss_pred -cceeccCCcchhhhhhhhHHHhHHHHHHHhchhCcEEEEEecCCCCChhhhhhhhhhhhhcCCChHHHHHHHHHhcCCC
Confidence 78888999999999999999999999999999999999999999999998654322111100000 001112455788
Q ss_pred cccccchhhhhhhhhcCChHHHHHHHHHHhccCccc
Q 010380 412 PRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWF 447 (512)
Q Consensus 412 ~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~ 447 (512)
+|+..|+|+++++.||+++...+.++..+..||+|.
T Consensus 223 ~R~g~pediA~~v~fL~S~~a~~itG~~i~vDGG~t 258 (260)
T d1x1ta1 223 LQFVTPEQLGGTAVFLASDAAAQITGTTVSVDGGWT 258 (260)
T ss_dssp CCCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred CCCcCHHHHHHHHHHHhChhhCCCcCCEEEECcchh
Confidence 999999999999999999999999999999999884
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=100.00 E-value=8.9e-48 Score=378.82 Aligned_cols=252 Identities=21% Similarity=0.328 Sum_probs=221.3
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChh
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPA 256 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~ 256 (512)
.|++|||||++|||+++|++|+++|++|++++|++++++++.+++.+ .+.++.+++||++|++
T Consensus 1 KKValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~-----------------~g~~~~~~~~Dv~~~~ 63 (255)
T d1gega_ 1 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQ-----------------AGGHAVAVKVDVSDRD 63 (255)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-----------------TTCCEEEEECCTTSHH
T ss_pred CCEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh-----------------cCCcEEEEEeeCCCHH
Confidence 37899999999999999999999999999999999999999999876 4678999999999999
Q ss_pred hHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCC
Q 010380 257 DVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSG 336 (512)
Q Consensus 257 sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~ 336 (512)
+++++++++.+++|+||+||||||+.. ..++.+++.++|++++++|+.|+++++|+++|+|.+++++++||++||. ++
T Consensus 64 ~v~~~~~~~~~~~g~iDilVnnAG~~~-~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~g~Iv~isS~-~~ 141 (255)
T d1gega_ 64 QVFAAVEQARKTLGGFDVIVNNAGVAP-STPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQ-AG 141 (255)
T ss_dssp HHHHHHHHHHHHTTCCCEEEECCCCCC-CBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCG-GG
T ss_pred HHHHHHHHHHHHhCCccEEEecccccc-cCcHHHhhhhhhhhhhhhcccchhhhhhhhcchhhhhccccccccccch-hh
Confidence 999999999999999999999999987 7899999999999999999999999999999998887677899999998 67
Q ss_pred CCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhc-CCHHHHHHHhccccc
Q 010380 337 GSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIIC-ELPETVARTLVPRIR 415 (512)
Q Consensus 337 ~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~-~~pe~vA~~~l~r~~ 415 (512)
..+.|+.+.|++||+|+++|+++|+.|++++|||||+|+||+|+|||+................ ...+...+.+++|+.
T Consensus 142 ~~~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~R~~ 221 (255)
T d1gega_ 142 HVGNPELAVYSSSKFAVRGLTQTAARDLAPLGITVNGYCPGIVKTPMWAEIDRQVSEAAGKPLGYGTAEFAKRITLGRLS 221 (255)
T ss_dssp TSCCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHHHHHHHHHHHHHHTCCTTHHHHHHHTTCTTCSCB
T ss_pred cccCcccccchhCHHHHHhhHHHHHHHhhhhCcEEEEEecCcccChHHhhhhhhhHhhhcccchhHHHHHHhcCCCCCCc
Confidence 8889999999999999999999999999999999999999999999975422211111110000 012334457899999
Q ss_pred cchhhhhhhhhcCChHHHHHHHHHHhccCccc
Q 010380 416 VVKGSGKAINYLTPPRILLALVTAWLRRGRWF 447 (512)
Q Consensus 416 ~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~ 447 (512)
.|+|+++++.||++++..+.++..+..||+|.
T Consensus 222 ~peevA~~v~fL~S~~a~~itG~~i~vDGG~~ 253 (255)
T d1gega_ 222 EPEDVAACVSYLASPDSDYMTGQSLLIDGGMV 253 (255)
T ss_dssp CHHHHHHHHHHHHSGGGTTCCSCEEEESSSSS
T ss_pred CHHHHHHHHHHHhCchhCCccCcEEEecCCEE
Confidence 99999999999999999999999999999874
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=2.6e-47 Score=376.49 Aligned_cols=248 Identities=23% Similarity=0.309 Sum_probs=197.3
Q ss_pred cCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEcc
Q 010380 172 HCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACD 251 (512)
Q Consensus 172 ~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~D 251 (512)
.++|+||++|||||++|||+++|++|+++|++|++++|++++++++.+++.+ .+.++.++.||
T Consensus 3 ~F~LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~-----------------~~~~~~~~~~D 65 (259)
T d1xq1a_ 3 RWSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQK-----------------KGFQVTGSVCD 65 (259)
T ss_dssp TTCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-----------------TTCCEEEEECC
T ss_pred ccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh-----------------cCCceEEEecc
Confidence 5689999999999999999999999999999999999999999999988876 45689999999
Q ss_pred CCChhhHHHHHHHHHHHc-CCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEee
Q 010380 252 VCEPADVQKLSNFAVNEF-GSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNM 330 (512)
Q Consensus 252 ltd~~sv~~~~~~i~~~~-g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~v 330 (512)
++|+++++++++++.+++ |+||+||||||+.. ..++.+++.++|++++++|+.|+++++|+++|+|+++ +.|+||++
T Consensus 66 v~~~~~v~~~~~~~~~~~~g~idilvnnAG~~~-~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~-~~G~Iv~i 143 (259)
T d1xq1a_ 66 ASLRPEREKLMQTVSSMFGGKLDILINNLGAIR-SKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKAS-GCGNIIFM 143 (259)
T ss_dssp TTSHHHHHHHHHHHHHHHTTCCSEEEEECCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SSCEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCcccccccccccC-CCchhhCCHHHHHHHHHHHhhhheeeehhhhhccccc-cccccccc
Confidence 999999999999999998 78999999999987 6889999999999999999999999999999999987 67999999
Q ss_pred cCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHh
Q 010380 331 DGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTL 410 (512)
Q Consensus 331 SS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~ 410 (512)
||. .+..+.++..+|++||+|+.+|+++|+.|++++|||||+|+||+|+|||......... ......+.+
T Consensus 144 sS~-~~~~~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~V~PG~i~T~~~~~~~~~~~---------~~~~~~~~p 213 (259)
T d1xq1a_ 144 SSI-AGVVSASVGSIYSATKGALNQLARNLACEWASDGIRANAVAPAVIATPLAEAVYDDEF---------KKVVISRKP 213 (259)
T ss_dssp C-----------CCHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCSCC------------------------------
T ss_pred ccc-cccccccccccccccccchhhhhHHHHHHhcccCeEEEEeccCcccCHHhhhhchHHH---------HHHHHhCCC
Confidence 998 6778889999999999999999999999999999999999999999999754322111 122345678
Q ss_pred ccccccchhhhhhhhhcCChHHHHHHHHHHhccCcccc
Q 010380 411 VPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWFD 448 (512)
Q Consensus 411 l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~~ 448 (512)
++|+..|+|++.++.||+++...+.++..+..||+|..
T Consensus 214 l~R~~~pedvA~~v~fL~S~~s~~iTG~~i~vDGG~s~ 251 (259)
T d1xq1a_ 214 LGRFGEPEEVSSLVAFLCMPAASYITGQTICVDGGLTV 251 (259)
T ss_dssp ----CCGGGGHHHHHHHTSGGGTTCCSCEEECCCCEEE
T ss_pred CCCCcCHHHHHHHHHHHhCchhcCCcCcEEEeCCCEEC
Confidence 99999999999999999999999999999999998854
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=1.2e-47 Score=375.57 Aligned_cols=237 Identities=24% Similarity=0.338 Sum_probs=216.9
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
+|+||++|||||++|||+++|+.|+++|++|++++|++++++++.+++ +.++.+++||++
T Consensus 3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~--------------------~~~~~~~~~Dv~ 62 (244)
T d1nffa_ 3 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAEL--------------------ADAARYVHLDVT 62 (244)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT--------------------GGGEEEEECCTT
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh--------------------hCcceEEEeecC
Confidence 589999999999999999999999999999999999999887776664 246788999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
|+++++++++++.+++|+||+||||||+.. ..++.+++.++|++++++|+.|+++++|+++|.|+++ +.|+||++||.
T Consensus 63 ~~~~v~~~~~~~~~~~g~idilinnAG~~~-~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~G~Ii~isS~ 140 (244)
T d1nffa_ 63 QPAQWKAAVDTAVTAFGGLHVLVNNAGILN-IGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEA-GRGSIINISSI 140 (244)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCCC-CBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCG
T ss_pred CHHHHHHHHHHHHHHhCCCeEEEECCcccC-CCchhhCCHHHHhHHhhcccchhhHHHHHHHhHHHhc-CcceEEecccc
Confidence 999999999999999999999999999987 7899999999999999999999999999999999987 67999999998
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhccc
Q 010380 334 GSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPR 413 (512)
Q Consensus 334 ~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~r 413 (512)
++..+.++..+|++||+|+++|+++|+.|++++|||||+|+||+|+|||.... +++..+.+++|
T Consensus 141 -~~~~~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~---------------~~~~~~~pl~R 204 (244)
T d1nffa_ 141 -EGLAGTVACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMTDWV---------------PEDIFQTALGR 204 (244)
T ss_dssp -GGTSCCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSGGGTTS---------------CTTCSCCSSSS
T ss_pred -ccccccccccchhhHHHHHHHHHHHHHHHhcccCEEEEEEeeCCccChhHhhh---------------hHHHHhccccC
Confidence 67888999999999999999999999999999999999999999999996432 12233467899
Q ss_pred cccchhhhhhhhhcCChHHHHHHHHHHhccCcccc
Q 010380 414 IRVVKGSGKAINYLTPPRILLALVTAWLRRGRWFD 448 (512)
Q Consensus 414 ~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~~ 448 (512)
+..|+|++.++.||+++...+.++..+..||++..
T Consensus 205 ~~~p~diA~~v~fL~s~~s~~itG~~i~vDGG~~a 239 (244)
T d1nffa_ 205 AAEPVEVSNLVVYLASDESSYSTGAEFVVDGGTVA 239 (244)
T ss_dssp CBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGG
T ss_pred CCCHHHHHHHHHHHhChhhCCCcCCEEEECCCeec
Confidence 99999999999999999999999999999998854
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=100.00 E-value=2.4e-47 Score=377.09 Aligned_cols=248 Identities=24% Similarity=0.328 Sum_probs=219.3
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcCh-hhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSS-ESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~-~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
+++||++|||||++|||+++|++|+++|++|++++|+. +.++++.+++++ .+.++.+++||+
T Consensus 4 dL~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~-----------------~g~~~~~~~~Dv 66 (261)
T d1geea_ 4 DLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKK-----------------VGGEAIAVKGDV 66 (261)
T ss_dssp GGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH-----------------TTCEEEEEECCT
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHh-----------------cCCcEEEEEccC
Confidence 68999999999999999999999999999999999985 467777777765 467899999999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|+++++++++++.+++|+||+||||||+.. ..++.+++.++|++++++|+.|+++++|+++|+|++++.+++||++||
T Consensus 67 t~~~~v~~~~~~~~~~~G~iDiLVnnAG~~~-~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~~Iv~isS 145 (261)
T d1geea_ 67 TVESDVINLVQSAIKEFGKLDVMINNAGLEN-PVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSS 145 (261)
T ss_dssp TSHHHHHHHHHHHHHHHSCCCEEEECCCCCC-CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred CCHHHHHHHHHHHHHHhCCCCEeeccceecC-CcchhhcCHHHHHHHHHHhcccchhHHHHHhhhhcccccccccccccc
Confidence 9999999999999999999999999999987 688999999999999999999999999999999998866677999999
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhcc
Q 010380 333 AGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVP 412 (512)
Q Consensus 333 ~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~ 412 (512)
. ++..+.|+..+|++||+|+.+|+++|+.|++++|||||+|+||+|+|||....... ++. ..+.....+++
T Consensus 146 ~-~~~~~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~v~T~~~~~~~~~--~~~------~~~~~~~~pl~ 216 (261)
T d1geea_ 146 V-HEKIPWPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPINAEKFAD--PEQ------RADVESMIPMG 216 (261)
T ss_dssp G-GGTSCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSGGGHHHHHS--HHH------HHHHHTTCTTS
T ss_pred c-hhcccCccccccccCCccchhhHHHHHHHhhhhCcEEEEEeeCcCcCHhHhhhcCC--HHH------HHHHHhcCCCC
Confidence 8 67889999999999999999999999999999999999999999999986432110 000 11223346789
Q ss_pred ccccchhhhhhhhhcCChHHHHHHHHHHhccCcccc
Q 010380 413 RIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWFD 448 (512)
Q Consensus 413 r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~~ 448 (512)
|+..|+|+++++.||+++...+.++..+..||+|..
T Consensus 217 R~~~pediA~~v~fL~S~~s~~itG~~i~vDGG~sl 252 (261)
T d1geea_ 217 YIGEPEEIAAVAAWLASSEASYVTGITLFADGGMTL 252 (261)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGG
T ss_pred CCCCHHHHHHHHHHHhCchhcCCcCCeEEECCCeeC
Confidence 999999999999999999998889999988888743
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=100.00 E-value=2.3e-47 Score=376.08 Aligned_cols=251 Identities=24% Similarity=0.358 Sum_probs=218.2
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
|+++||++|||||++|||+++|+.|+++|++|++++|+.++++++.+++ +.++.+++||+
T Consensus 1 M~L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~--------------------~~~~~~~~~Dv 60 (256)
T d1k2wa_ 1 MRLDGKTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAEI--------------------GPAACAIALDV 60 (256)
T ss_dssp CTTTTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHHHH--------------------CTTEEEEECCT
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh--------------------CCceEEEEeeC
Confidence 5789999999999999999999999999999999999999888777664 35688899999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|+++++++++++.+++|+||+||||||+.. ..++.+++.++|++++++|+.|+++++|+++|.|.+++++|+||++||
T Consensus 61 t~~~~v~~~~~~~~~~~g~iDilVnnAg~~~-~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~~~~~~~~g~Iv~isS 139 (256)
T d1k2wa_ 61 TDQASIDRCVAELLDRWGSIDILVNNAALFD-LAPIVEITRESYDRLFAINVSGTLFMMQAVARAMIAGGRGGKIINMAS 139 (256)
T ss_dssp TCHHHHHHHHHHHHHHHSCCCEEEECCCCCC-CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECC
T ss_pred CCHHHHHHHHHHHHHHhCCccEEEeeccccc-ccccccCCHHHHHhhhceeeeccccchhhccchhHHhccCCccccccc
Confidence 9999999999999999999999999999987 689999999999999999999999999999998877656899999999
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhh--cCCHHHHHHHh
Q 010380 333 AGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNII--CELPETVARTL 410 (512)
Q Consensus 333 ~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~--~~~pe~vA~~~ 410 (512)
. ++..+.|+.++|++||+|+++|+++|+.|++++|||||+|+||+|+|||+......... ..... ....+.....+
T Consensus 140 ~-~~~~~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~V~PG~i~T~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~P 217 (256)
T d1k2wa_ 140 Q-AGRRGEALVGVYCATKAAVISLTQSAGLNLIRHGINVNAIAPGVVDGEHWDGVDAKFAD-YENLPRGEKKRQVGAAVP 217 (256)
T ss_dssp G-GGTSCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTHHHHHHHHHH-HHTCCTTHHHHHHHHHST
T ss_pred h-hhccccccccchhhhhhHHHHHHHHHHHHhcccCeEEEEEecCCCCchhhhhhhhhhhh-hccCChHHHHHHHHhcCC
Confidence 8 68889999999999999999999999999999999999999999999997432211110 00000 00122345568
Q ss_pred ccccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 411 VPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 411 l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
++|+..|+|+++++.||++++..+.++..+..||+.
T Consensus 218 lgR~~~p~evA~~v~fL~S~~a~~iTG~~i~vDGG~ 253 (256)
T d1k2wa_ 218 FGRMGRAEDLTGMAIFLATPEADYIVAQTYNVDGGN 253 (256)
T ss_dssp TSSCBCHHHHHHHHHHTTSGGGTTCCSCEEEESTTS
T ss_pred CCCCcCHHHHHHHHHHHhCchhCCccCceEEECcch
Confidence 999999999999999999999988888888888874
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7.9e-48 Score=376.73 Aligned_cols=241 Identities=24% Similarity=0.377 Sum_probs=217.5
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
+++||++|||||++|||+++|+.|+++|++|++++|++++++++.+++. .++.++.||++
T Consensus 1 dl~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~~--------------------~~~~~~~~Dv~ 60 (243)
T d1q7ba_ 1 NFEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYLG--------------------ANGKGLMLNVT 60 (243)
T ss_dssp CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHG--------------------GGEEEEECCTT
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhC--------------------CCCcEEEEEec
Confidence 5799999999999999999999999999999999999998888776652 35778999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
|+++++++++++.+++|+||+||||||... ..++.+++.++|++++++|+.++++++|+++|+|+++ ++|+||++||.
T Consensus 61 ~~~~v~~~~~~~~~~~g~iDilVnnAg~~~-~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~G~II~isS~ 138 (243)
T d1q7ba_ 61 DPASIESVLEKIRAEFGEVDILVNNAGITR-DNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKK-RHGRIITIGSV 138 (243)
T ss_dssp CHHHHHHHHHHHHHHTCSCSEEEECCCCCC-CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCH
T ss_pred CHHHhhhhhhhhhcccCCcceehhhhhhcc-ccccccccccccccccceeechhhhhHHHHHHHHHHc-CCCEeeeecch
Confidence 999999999999999999999999999987 6889999999999999999999999999999999987 57999999998
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhccc
Q 010380 334 GSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPR 413 (512)
Q Consensus 334 ~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~r 413 (512)
++..+.|+.++|++||+|+++|+++|+.|++++|||||+|+||+|+|||......... .+...+.+++|
T Consensus 139 -~~~~~~~~~~~Y~asKaal~~lt~~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~----------~~~~~~~pl~R 207 (243)
T d1q7ba_ 139 -VGTMGNGGQANYAAAKAGLIGFSKSLAREVASRGITVNVVAPGFIETDMTRALSDDQR----------AGILAQVPAGR 207 (243)
T ss_dssp -HHHHCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTSCHHHH----------HHHHTTCTTSS
T ss_pred -hhcCCCCCCHHHHHHHHHHHHHHHHHHHHhCccCeEEEEEecceEechhhhhhhhhHH----------HHHHhcCCCCC
Confidence 6778889999999999999999999999999999999999999999999755432211 22234567899
Q ss_pred cccchhhhhhhhhcCChHHHHHHHHHHhccCccc
Q 010380 414 IRVVKGSGKAINYLTPPRILLALVTAWLRRGRWF 447 (512)
Q Consensus 414 ~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~ 447 (512)
+..|+|+++++.||+++...+.+++.+..||+|.
T Consensus 208 ~~~pedvA~~v~fL~S~~s~~itGq~i~vdGG~~ 241 (243)
T d1q7ba_ 208 LGGAQEIANAVAFLASDEAAYITGETLHVNGGMY 241 (243)
T ss_dssp CBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTSS
T ss_pred CCCHHHHHHHHHHHhCchhcCCcCCeEEECCCeE
Confidence 9999999999999999999888999998888874
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=100.00 E-value=3.1e-47 Score=376.05 Aligned_cols=253 Identities=19% Similarity=0.289 Sum_probs=220.0
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
+++||++|||||++|||+++|+.|+++|++|++++|++++++++.+++++ .+.++.++.||++
T Consensus 2 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~-----------------~g~~~~~~~~Dv~ 64 (260)
T d1zema1 2 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVRE-----------------KGVEARSYVCDVT 64 (260)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHT-----------------TTSCEEEEECCTT
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh-----------------cCCcEEEEEccCC
Confidence 58999999999999999999999999999999999999999998888865 4578999999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
|+++++++++++.+++|+||+||||||+..+..++.+++.++|++++++|+.++++++|+++|+|+++ +.|+||++||.
T Consensus 65 ~~~~v~~~~~~~~~~~g~iDilVnnaG~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~-~~G~II~isS~ 143 (260)
T d1zema1 65 SEEAVIGTVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQ-NYGRIVNTASM 143 (260)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCH
T ss_pred CHHHHHHHHHHHHHHhCCCCeehhhhccccccCccccccHHHHHhhccccccccccchhhHHhhhhhh-cCCCCCeeech
Confidence 99999999999999999999999999987656789999999999999999999999999999999987 68999999998
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhh-hhhhhcCCHHHHH-----
Q 010380 334 GSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQ-MFNIICELPETVA----- 407 (512)
Q Consensus 334 ~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~-~~~~~~~~pe~vA----- 407 (512)
++..+.|+.++|++||+|+++|+++|+.|++++|||||+|+||+|+|+|........... ........|+.++
T Consensus 144 -~~~~~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (260)
T d1zema1 144 -AGVKGPPNMAAYGTSKGAIIALTETAALDLAPYNIRVNAISPGYMGPGFMWERQVELQAKVGSQYFSTDPKVVAQQMIG 222 (260)
T ss_dssp -HHHSCCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSHHHHHHHHHHHHHTCTTSCSSHHHHHHHHHH
T ss_pred -hhccCCcchHHHHHHHHHHHHHHHHHHHHhhhhCCEEEEeccCcccCcchhhcchhhhhhhcccccccCHHHHHHHHHh
Confidence 678889999999999999999999999999999999999999999999874322111111 1111222444443
Q ss_pred HHhccccccchhhhhhhhhcCChHHHHHHHHHHhccCc
Q 010380 408 RTLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGR 445 (512)
Q Consensus 408 ~~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~ 445 (512)
..+++|+..|+|++.++.||+++...+.++..+..||+
T Consensus 223 ~~Pl~R~g~pedvA~~v~fL~S~~s~~itG~~i~VDGG 260 (260)
T d1zema1 223 SVPMRRYGDINEIPGVVAFLLGDDSSFMTGVNLPIAGG 260 (260)
T ss_dssp TSTTSSCBCGGGSHHHHHHHHSGGGTTCCSCEEEESCC
T ss_pred cCCCCCCcCHHHHHHHHHHHhCchhcCccCCeEEeCCC
Confidence 35688999999999999999999988777777766663
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=100.00 E-value=4.5e-47 Score=372.14 Aligned_cols=242 Identities=21% Similarity=0.311 Sum_probs=205.6
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
+|+||++|||||++|||+++|+.|+++|++|++++|++++. ..+.+++ .+.++.++.||++
T Consensus 2 rL~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~--~~~~~~~-----------------~g~~~~~~~~Dvs 62 (247)
T d2ew8a1 2 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPE--AEAAIRN-----------------LGRRVLTVKCDVS 62 (247)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHH--HHHHHHH-----------------TTCCEEEEECCTT
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHH--HHHHHHH-----------------cCCcEEEEEeeCC
Confidence 58999999999999999999999999999999999987532 2233333 4578999999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
|+++++++++++.+++|+||+||||||+.. ..++.+++.|+|++++++|+.|+++++|+++|+|+++ +.|+||++||.
T Consensus 63 ~~~~v~~~~~~~~~~~G~iDilVnnAG~~~-~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~G~Iv~isS~ 140 (247)
T d2ew8a1 63 QPGDVEAFGKQVISTFGRCDILVNNAGIYP-LIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRN-GWGRIINLTST 140 (247)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCCC-CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCG
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCC-CCChHhCCHHHhhhhheeehhhhhHHHHHHHhHHHhc-CCCCccccccc
Confidence 999999999999999999999999999987 7899999999999999999999999999999999987 67999999998
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHH--HHhc
Q 010380 334 GSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVA--RTLV 411 (512)
Q Consensus 334 ~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA--~~~l 411 (512)
++..+.|+.++|++||+|+.+|+++|+.|++++|||||+|+||+|+|+|.......... +... ..++
T Consensus 141 -~~~~~~~~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~----------~~~~~~~~~l 209 (247)
T d2ew8a1 141 -TYWLKIEAYTHYISTKAANIGFTRALASDLGKDGITVNAIAPSLVRTATTEASALSAMF----------DVLPNMLQAI 209 (247)
T ss_dssp -GGGSCCSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCC----------------------------CTTSSS
T ss_pred -hhcccCcccccchhhhccHHHHHHHHHHHhcccCeEEEEEeeCCCCCccccccccchhH----------HHHHHHhccC
Confidence 67888999999999999999999999999999999999999999999997543221111 1111 1368
Q ss_pred cccccchhhhhhhhhcCChHHHHHHHHHHhccCccc
Q 010380 412 PRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWF 447 (512)
Q Consensus 412 ~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~ 447 (512)
+|+..|+|+++++.||+++...+.++..+..||+|.
T Consensus 210 ~r~~~pedvA~~v~fL~S~~s~~itG~~i~vDGG~~ 245 (247)
T d2ew8a1 210 PRLQVPLDLTGAAAFLASDDASFITGQTLAVDGGMV 245 (247)
T ss_dssp CSCCCTHHHHHHHHHHTSGGGTTCCSCEEEESSSCC
T ss_pred CCCCCHHHHHHHHHHHhCchhcCCcCCeEEECCCEe
Confidence 899999999999999999999899999999999874
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=100.00 E-value=2.3e-47 Score=376.19 Aligned_cols=247 Identities=26% Similarity=0.374 Sum_probs=217.3
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCCh
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEP 255 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~ 255 (512)
.||++|||||++|||+++|++|+++|++|++++|++++++++.+++.+ .+.++.+++||++|+
T Consensus 1 DgKValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~-----------------~g~~~~~~~~Dvs~~ 63 (257)
T d2rhca1 1 DSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELRE-----------------AGVEADGRTCDVRSV 63 (257)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-----------------TTCCEEEEECCTTCH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh-----------------cCCcEEEEEeecCCH
Confidence 389999999999999999999999999999999999999999999876 457899999999999
Q ss_pred hhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHH--HHhCCCCCeEEeecCC
Q 010380 256 ADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRV--MRDQPKGGHIFNMDGA 333 (512)
Q Consensus 256 ~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~--m~~~~~~g~IV~vSS~ 333 (512)
++++++++++.+++|+||+||||||+.. ..++.+++.|+|++++++|+.|+++++|+++|+ |.++ +.|+||+++|.
T Consensus 64 ~~v~~~~~~~~~~~g~iDilVnnAG~~~-~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~~~~~~~-~~g~Ii~i~S~ 141 (257)
T d2rhca1 64 PEIEALVAAVVERYGPVDVLVNNAGRPG-GGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLER-GTGRIVNIAST 141 (257)
T ss_dssp HHHHHHHHHHHHHTCSCSEEEECCCCCC-CSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTSHHHH-TEEEEEEECCG
T ss_pred HHHHHHHHHHHHHhCCCCEEEecccccC-CCChHHcCHHHHHHHHHHHhhhhhHHHHHHhHHHHHHhc-CCccccccccc
Confidence 9999999999999999999999999987 689999999999999999999999999999997 4444 56899999998
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHH-----HHH
Q 010380 334 GSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPET-----VAR 408 (512)
Q Consensus 334 ~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~-----vA~ 408 (512)
.+..+.|+..+|++||+|+.+|+++|+.|++++|||||+|+||+|+|||......... ......+++ ..+
T Consensus 142 -~~~~~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~----~~~~~~~~e~~~~~~~~ 216 (257)
T d2rhca1 142 -GGKQGVVHAAPYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPMAASVREHYS----DIWEVSTEEAFDRITAR 216 (257)
T ss_dssp -GGTSCCTTCHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEECSBCSHHHHHHHHHHH----HHTTCCHHHHHHHHHTT
T ss_pred -ccccccccchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCCCCCHHHHHHHhhhh----hhcccChHHHHHHHHhc
Confidence 6788999999999999999999999999999999999999999999999743221111 111112222 334
Q ss_pred HhccccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 409 TLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 409 ~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
.+++|+..|+|+++++.||+++...+.++..+..||++
T Consensus 217 ~PlgR~~~pedia~~v~fL~S~~s~~itG~~i~vDGG~ 254 (257)
T d2rhca1 217 VPIGRYVQPSEVAEMVAYLIGPGAAAVTAQALNVCGGL 254 (257)
T ss_dssp STTSSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTC
T ss_pred CCCCCCcCHHHHHHHHHHHhCchhcCCcCceEEECcCc
Confidence 56889999999999999999999988888888888875
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=100.00 E-value=2.9e-47 Score=374.39 Aligned_cols=245 Identities=22% Similarity=0.317 Sum_probs=218.5
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
+|+||++|||||++|||+++|+.|+++|++|++++|+++.++++.+++. .+.++.+++||++
T Consensus 3 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~------------------~~~~~~~~~~Dv~ 64 (251)
T d1zk4a1 3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVG------------------TPDQIQFFQHDSS 64 (251)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC------------------CTTTEEEEECCTT
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC------------------CCCcEEEEEccCC
Confidence 5899999999999999999999999999999999999998888777663 2357889999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
|+++++++++++.+++|+||+||||||+.. ..++.+++.++|++++++|+.|+++++|+++|+|++++.+++||++||.
T Consensus 65 ~~~~v~~~~~~~~~~~G~iDiLVnnAg~~~-~~~~~~~~~~~~~~~~~vnl~g~~~~~~~~~~~m~~~~~gg~Ii~isS~ 143 (251)
T d1zk4a1 65 DEDGWTKLFDATEKAFGPVSTLVNNAGIAV-NKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSI 143 (251)
T ss_dssp CHHHHHHHHHHHHHHHSSCCEEEECCCCCC-CCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCG
T ss_pred CHHHHHHHHHHHHHHhCCceEEEecccccc-ccchhcccccchhhhccccccccchhHHHHHHHHHhcCCCCceEeeecc
Confidence 999999999999999999999999999987 6899999999999999999999999999999999988656799999998
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHH--hCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhc
Q 010380 334 GSGGSSTPLTAVYGSTKCGLRQLQASLFKE--SKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLV 411 (512)
Q Consensus 334 ~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~E--l~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l 411 (512)
++..+.|+..+|++||+|+.+|+++|+.| ++++|||||+|+||+|+|||.......... .. ...+.++
T Consensus 144 -~~~~~~~~~~~Y~asKaal~~lt~~lA~e~~l~~~gIrVN~I~PG~i~T~~~~~~~~~~~~--~~-------~~~~~pl 213 (251)
T d1zk4a1 144 -EGFVGDPSLGAYNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPLVDDLPGAEEA--MS-------QRTKTPM 213 (251)
T ss_dssp -GGTSCCTTCHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEECCBCCHHHHTSTTHHHH--HT-------STTTCTT
T ss_pred -ceeccCCCchhHHHHHHHHhcchHHHHHHHhcCCCcEEEEEEeCCCCCChhHHhcCCHHHH--HH-------HHhCCCC
Confidence 67888999999999999999999999999 678999999999999999997654322111 11 1224678
Q ss_pred cccccchhhhhhhhhcCChHHHHHHHHHHhccCccc
Q 010380 412 PRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWF 447 (512)
Q Consensus 412 ~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~ 447 (512)
+|+..|+|++.++.||++++..+.++..+..||+|.
T Consensus 214 ~R~~~pedvA~~v~fL~S~~s~~itG~~i~vDGG~t 249 (251)
T d1zk4a1 214 GHIGEPNDIAYICVYLASNESKFATGSEFVVDGGYT 249 (251)
T ss_dssp SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred CCCcCHHHHHHHHHHHhCchhCCCcCcEEEECcccc
Confidence 999999999999999999999899999999999874
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=1.2e-46 Score=368.19 Aligned_cols=239 Identities=22% Similarity=0.253 Sum_probs=212.5
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
|+++||++|||||++|||+++|++|+++|++|++++|++++++++.+++ ++.++.||+
T Consensus 1 M~L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~~----------------------~~~~~~~Dv 58 (242)
T d1ulsa_ 1 MRLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAV----------------------GAHPVVMDV 58 (242)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT----------------------TCEEEECCT
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc----------------------CCeEEEEec
Confidence 5789999999999999999999999999999999999998877655432 356789999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|+++++++++++.+++|+||+||||||+.. ..++.+++.++|++++++|+.|+++++|+++|.|+++ +.++|+++||
T Consensus 59 ~~~~~v~~~~~~~~~~~g~iDilVnnAG~~~-~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~~~i~~~ss 136 (242)
T d1ulsa_ 59 ADPASVERGFAEALAHLGRLDGVVHYAGITR-DNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREK-NPGSIVLTAS 136 (242)
T ss_dssp TCHHHHHHHHHHHHHHHSSCCEEEECCCCCC-CCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-CCEEEEEECC
T ss_pred CCHHHHHHHHHHHHHhcCCceEEEECCcccc-cCchhhCcchhhhccccccchhhhhhhhhcccccccc-ccceeeeecc
Confidence 9999999999999999999999999999987 6899999999999999999999999999999999887 5677777776
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhcc
Q 010380 333 AGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVP 412 (512)
Q Consensus 333 ~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~ 412 (512)
. ...+.|+..+|++||+|+++|+++|+.|++++|||||+|+||+|+|+|........ ..+.....+++
T Consensus 137 ~--~~~~~~~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~v~T~~~~~~~~~~----------~~~~~~~~pl~ 204 (242)
T d1ulsa_ 137 R--VYLGNLGQANYAASMAGVVGLTRTLALELGRWGIRVNTLAPGFIETRMTAKVPEKV----------REKAIAATPLG 204 (242)
T ss_dssp G--GGGCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTSSSCHHH----------HHHHHHTCTTC
T ss_pred c--cccCCCCCcchHHHHHHHHHHHHHHHHHHhhhCcEEEEEeeCcccChhhhcCCHHH----------HHHHHhcCCCC
Confidence 4 56788899999999999999999999999999999999999999999986533211 12334567899
Q ss_pred ccccchhhhhhhhhcCChHHHHHHHHHHhccCccc
Q 010380 413 RIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWF 447 (512)
Q Consensus 413 r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~ 447 (512)
|+..|+|+++++.||++++..+.++..+..||+|.
T Consensus 205 R~~~pedia~~v~fL~S~~s~~itG~~i~vDGG~t 239 (242)
T d1ulsa_ 205 RAGKPLEVAYAALFLLSDESSFITGQVLFVDGGRT 239 (242)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTTT
T ss_pred CCCCHHHHHHHHHHHhchhhCCCCCcEEEECCCcc
Confidence 99999999999999999999899999999998874
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=100.00 E-value=1.1e-46 Score=370.87 Aligned_cols=242 Identities=28% Similarity=0.357 Sum_probs=216.6
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
+|+||++|||||++|||+++|++|+++|++|++++|++++++++.+++ +.++.+++||++
T Consensus 2 dL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~--------------------~~~~~~~~~Dv~ 61 (254)
T d1hdca_ 2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAREL--------------------GDAARYQHLDVT 61 (254)
T ss_dssp CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT--------------------GGGEEEEECCTT
T ss_pred CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh--------------------CCceEEEEcccC
Confidence 589999999999999999999999999999999999998877665543 357889999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
|+++++++++++.+++|+||+||||||+.. ..++.+.+.|+|++++++|+.|+++++|+++|+|+++ +.|+||++||.
T Consensus 62 ~~~~v~~~~~~~~~~~g~iDilVnnAg~~~-~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~-~~G~II~isS~ 139 (254)
T d1hdca_ 62 IEEDWQRVVAYAREEFGSVDGLVNNAGIST-GMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDA-GGGSIVNISSA 139 (254)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCCC-CSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCG
T ss_pred CHHHHHHHHHHHHHHcCCccEEEecCcccc-ccccccccccccchhhhHHhhHHHHHHHHHHHHHhhc-CCCeecccccc
Confidence 999999999999999999999999999987 6899999999999999999999999999999999987 68999999998
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhccc
Q 010380 334 GSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPR 413 (512)
Q Consensus 334 ~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~r 413 (512)
++..+.++.++|++||+|+.+|+++|+.|++++|||||+|+||+|+|+|..+...... .....+.+++|
T Consensus 140 -~~~~~~~~~~~Y~asKaal~~lt~~lA~e~a~~gIrVN~I~PG~v~T~~~~~~~~~~~----------~~~~~~~pl~R 208 (254)
T d1hdca_ 140 -AGLMGLALTSSYGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMTYTPMTAETGIRQG----------EGNYPNTPMGR 208 (254)
T ss_dssp -GGTSCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHTCCCS----------TTSCTTSTTSS
T ss_pred -hhcccccchhhHHHHHHHHHHHHHHHHHHhCCCceEEEEeeeCcccCccchhcCHHHH----------HHHHhCCCCCC
Confidence 6788899999999999999999999999999999999999999999998743221111 11223467888
Q ss_pred cc-cchhhhhhhhhcCChHHHHHHHHHHhccCcccc
Q 010380 414 IR-VVKGSGKAINYLTPPRILLALVTAWLRRGRWFD 448 (512)
Q Consensus 414 ~~-~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~~ 448 (512)
+. .|+|++.++.||+++...+.++..+..||+|..
T Consensus 209 ~g~~PedvA~~v~fL~S~~a~~itG~~i~vDGG~t~ 244 (254)
T d1hdca_ 209 VGNEPGEIAGAVVKLLSDTSSYVTGAELAVDGGWTT 244 (254)
T ss_dssp CB-CHHHHHHHHHHHHSGGGTTCCSCEEEESTTTTT
T ss_pred CCCCHHHHHHHHHHHhchhhCCCCCceEEeCCCccC
Confidence 87 599999999999999999999999999999854
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.6e-47 Score=371.23 Aligned_cols=245 Identities=24% Similarity=0.336 Sum_probs=210.7
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
+++||++|||||++|||+++|+.|+++|++|++++|++++++++.+++ .++.++.||++
T Consensus 3 rl~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~---------------------~~~~~~~~Dvs 61 (250)
T d1ydea1 3 RYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQEL---------------------PGAVFILCDVT 61 (250)
T ss_dssp TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC---------------------TTEEEEECCTT
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc---------------------CCCeEEEccCC
Confidence 689999999999999999999999999999999999998877665543 34678999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
|+++++++++++.+++|+||+||||||+.....++.+++.++|++++++|+.|+++++|+++|+|+++ +|+||++||.
T Consensus 62 ~~~~v~~~~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~--~G~Ii~isS~ 139 (250)
T d1ydea1 62 QEDDVKTLVSETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKS--QGNVINISSL 139 (250)
T ss_dssp SHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEECCH
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhC--CCCCcccccc
Confidence 99999999999999999999999999987645678899999999999999999999999999999875 5899999998
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhccc
Q 010380 334 GSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPR 413 (512)
Q Consensus 334 ~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~r 413 (512)
++..+.|+..+|++||+|+.+|+++|+.|++++|||||+|+||+|+|||............ . ...+.....+++|
T Consensus 140 -~~~~~~~~~~~Y~asKaal~~lt~~lA~e~a~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~-~---~~~~~~~~~pl~R 214 (250)
T d1ydea1 140 -VGAIGQAQAVPYVATKGAVTAMTKALALDESPYGVRVNCISPGNIWTPLWEELAALMPDPR-A---SIREGMLAQPLGR 214 (250)
T ss_dssp -HHHHCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHHHHTTSSSHH-H---HHHHHHHTSTTSS
T ss_pred -cccccccCcchhHHHHhhHHHHHHHHHHHhcccCeEEEEEeeCCCCChhHHHHhhcCCCHH-H---HHHHHHhcCCCCC
Confidence 6778889999999999999999999999999999999999999999998743211110000 0 0123344567899
Q ss_pred cccchhhhhhhhhcCChHHHHHHHHHHhccCccc
Q 010380 414 IRVVKGSGKAINYLTPPRILLALVTAWLRRGRWF 447 (512)
Q Consensus 414 ~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~ 447 (512)
+..|+|++.++.||+++ +.+.++..+..||++.
T Consensus 215 ~g~p~eva~~v~fL~Sd-a~~itG~~i~vDGG~~ 247 (250)
T d1ydea1 215 MGQPAEVGAAAVFLASE-ANFCTGIELLVTGGAE 247 (250)
T ss_dssp CBCHHHHHHHHHHHHHH-CTTCCSCEEEESTTTT
T ss_pred CCCHHHHHHHHHHHhCc-cCCCcCCeEEECCCcc
Confidence 99999999999999986 6678888888888763
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=100.00 E-value=2.4e-46 Score=366.38 Aligned_cols=239 Identities=23% Similarity=0.395 Sum_probs=213.5
Q ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEE-cChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChh
Q 010380 178 RNVVITGSTRGLGKALAREFLLSGDRVVVAS-RSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPA 256 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~Ga~Vvl~~-R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~ 256 (512)
++||||||++|||+++|++|+++|++|++.+ |+++.++++.+++++ .+.++.+++||++|++
T Consensus 2 pV~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~-----------------~g~~~~~~~~Dv~~~~ 64 (244)
T d1edoa_ 2 PVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEA-----------------YGGQAITFGGDVSKEA 64 (244)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH-----------------HTCEEEEEECCTTSHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHH-----------------cCCcEEEEeCCCCCHH
Confidence 5899999999999999999999999999875 567778888887765 4578999999999999
Q ss_pred hHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCC
Q 010380 257 DVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSG 336 (512)
Q Consensus 257 sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~ 336 (512)
+++++++++.+++|+||+||||||... ..++.+.+.++|++++++|+.|+++++|+++|+|+++ ++|+||++||. ++
T Consensus 65 ~v~~~~~~~~~~~g~iDiLVnnAg~~~-~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~G~IVnisS~-~~ 141 (244)
T d1edoa_ 65 DVEAMMKTAIDAWGTIDVVVNNAGITR-DTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKK-RKGRIINIASV-VG 141 (244)
T ss_dssp HHHHHHHHHHHHSSCCSEEEECCCCCC-CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCT-HH
T ss_pred HHHHHHHHHHHHcCCCCcccccccccc-ccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHc-CCcEEEEEcCh-hh
Confidence 999999999999999999999999987 6899999999999999999999999999999999987 68999999998 67
Q ss_pred CCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhcccccc
Q 010380 337 GSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPRIRV 416 (512)
Q Consensus 337 ~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~r~~~ 416 (512)
..+.++.++|++||+|+.+|+++|+.|++++|||||+|+||+|+|||......... .+...+.+++|+..
T Consensus 142 ~~~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrvN~I~PG~i~T~~~~~~~~~~~----------~~~~~~~pl~R~~~ 211 (244)
T d1edoa_ 142 LIGNIGQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMTAKLGEDME----------KKILGTIPLGRTGQ 211 (244)
T ss_dssp HHCCTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTTCHHHH----------HHHHTSCTTCSCBC
T ss_pred cCCCCCCHHHHHHHHHHHHChHHHHHHHhhhCcEEEEEecceeccHHHHHhhHHHH----------HHHHhcCCCCCCcC
Confidence 78889999999999999999999999999999999999999999999755322111 12234567899999
Q ss_pred chhhhhhhhhcC-ChHHHHHHHHHHhccCcc
Q 010380 417 VKGSGKAINYLT-PPRILLALVTAWLRRGRW 446 (512)
Q Consensus 417 ~~~va~~v~~L~-s~~~~~~~~~~~~~~g~~ 446 (512)
|+|+++++.||+ +|+..+.++..+..||++
T Consensus 212 p~dvA~~v~fLa~S~~a~~itG~~i~vdGG~ 242 (244)
T d1edoa_ 212 PENVAGLVEFLALSPAASYITGQAFTIDGGI 242 (244)
T ss_dssp HHHHHHHHHHHHHCSGGGGCCSCEEEESTTT
T ss_pred HHHHHHHHHHHHCCchhcCCcCCeEEeCCCe
Confidence 999999999996 899988888888888876
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=3.8e-46 Score=365.82 Aligned_cols=244 Identities=20% Similarity=0.269 Sum_probs=209.5
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
.++||++|||||++|||+++|+.|+++|++|++++|+++..+ ..+++ ...+++||++
T Consensus 2 ~l~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~~~-~~~~~----------------------~~~~~~~Dv~ 58 (248)
T d2d1ya1 2 LFAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKE-VAEAI----------------------GGAFFQVDLE 58 (248)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHHH-HHHHH----------------------TCEEEECCTT
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHHc----------------------CCeEEEEeCC
Confidence 478999999999999999999999999999999999977543 22221 2346899999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
|+++++++++++.+++|+||+||||||+.. ..++.+++.|+|++++++|+.|+++++|+++|+|+++ ++|+||+++|.
T Consensus 59 ~~~~v~~~~~~~~~~~G~iDiLVnnAG~~~-~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~-~~G~Ii~isS~ 136 (248)
T d2d1ya1 59 DERERVRFVEEAAYALGRVDVLVNNAAIAA-PGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKV-GGGAIVNVASV 136 (248)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCCC-CBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTT-TCEEEEEECCG
T ss_pred CHHHHHHHHHHHHHhcCCCCeEEEeCcCCC-CCChhhCCHHHHHHHHHhhhhhHhhhhhhhccccccc-ccccccccccc
Confidence 999999999999999999999999999987 6899999999999999999999999999999999987 68999999998
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhccc
Q 010380 334 GSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPR 413 (512)
Q Consensus 334 ~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~r 413 (512)
++..+.|+..+|++||+|+++|+++|+.|++++|||||+|+||+|+|||..+....... ............+++|
T Consensus 137 -~~~~~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~v~T~~~~~~~~~~~~----~~~~~~~~~~~~pl~R 211 (248)
T d2d1ya1 137 -QGLFAEQENAAYNASKGGLVNLTRSLALDLAPLRIRVNAVAPGAIATEAVLEAIALSPD----PERTRRDWEDLHALRR 211 (248)
T ss_dssp -GGTSBCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHC------------CHHHHTTSTTSS
T ss_pred -cccccccccchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCCCCCchHHHHhhcCCC----HHHHHHHHHhcCCCCC
Confidence 67889999999999999999999999999999999999999999999986432110000 0000112233457899
Q ss_pred cccchhhhhhhhhcCChHHHHHHHHHHhccCccc
Q 010380 414 IRVVKGSGKAINYLTPPRILLALVTAWLRRGRWF 447 (512)
Q Consensus 414 ~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~ 447 (512)
+..|+|+++++.||+++...+.++..+..||+|.
T Consensus 212 ~~~pedia~~v~fL~S~~s~~itG~~i~vDGG~t 245 (248)
T d2d1ya1 212 LGKPEEVAEAVLFLASEKASFITGAILPVDGGMT 245 (248)
T ss_dssp CBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred CcCHHHHHHHHHHHhCchhcCCCCcEEEcCcCcc
Confidence 9999999999999999999888999898888874
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.2e-45 Score=365.11 Aligned_cols=257 Identities=20% Similarity=0.256 Sum_probs=206.5
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
+++||++|||||++|||+++|++|+++|++|++++|++++++++.+++.+... .+.++.+++||++
T Consensus 2 rl~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~--------------~~~~~~~~~~Dvt 67 (264)
T d1spxa_ 2 RFAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGV--------------SEQNVNSVVADVT 67 (264)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--------------CGGGEEEEECCTT
T ss_pred CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--------------CcCceEEEEccCC
Confidence 58999999999999999999999999999999999999999999999876311 2357999999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCC---CCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEee
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKG---FKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNM 330 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~---~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~v 330 (512)
|+++++++++++.+++|+||+||||||+..+ ..++.+.+.|+|++++++|+.|+++++|+++|+|+++ +|.+|++
T Consensus 68 ~~~~v~~~~~~~~~~~g~iDilvnnAG~~~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~p~m~~~--~g~iI~~ 145 (264)
T d1spxa_ 68 TDAGQDEILSTTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSST--KGEIVNI 145 (264)
T ss_dssp SHHHHHHHHHHHHHHHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEE
T ss_pred CHHHHHHHHHHHHHHhCCCCEeecccccccCCccccccccCCHHHHHHHHHHhHHHHHHHHhhhCCccccc--cCcceee
Confidence 9999999999999999999999999998642 2346677999999999999999999999999999875 4677777
Q ss_pred cCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHh
Q 010380 331 DGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTL 410 (512)
Q Consensus 331 SS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~ 410 (512)
+|..++..+.|+.++|++||+|+++|+++|+.|++++|||||+|+||+|+|+|........... ..............+
T Consensus 146 ~S~~~~~~~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~V~PG~v~T~~~~~~~~~~~~~-~~~~~~~~~~~~~~P 224 (264)
T d1spxa_ 146 SSIASGLHATPDFPYYSIAKAAIDQYTRNTAIDLIQHGIRVNSISPGLVATGFGSAMGMPEETS-KKFYSTMATMKECVP 224 (264)
T ss_dssp CCTTSSSSCCTTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCCC---------------HHHHHHHHHHCT
T ss_pred eeeccccccCCCchhhhhhhhhHHHHHHHHHHHhcccCeEEEEEeeCCCCCcchhccCCcHHHH-HHHHHHHHHHHhcCC
Confidence 7665677889999999999999999999999999999999999999999999975432211110 000000122345578
Q ss_pred ccccccchhhhhhhhhcCChH-HHHHHHHHHhccCccc
Q 010380 411 VPRIRVVKGSGKAINYLTPPR-ILLALVTAWLRRGRWF 447 (512)
Q Consensus 411 l~r~~~~~~va~~v~~L~s~~-~~~~~~~~~~~~g~~~ 447 (512)
++|+..|+|+++++.||++++ ..+.++..+..||++.
T Consensus 225 l~R~g~pedvA~~v~fL~S~~~s~~itG~~i~vDGG~s 262 (264)
T d1spxa_ 225 AGVMGQPQDIAEVIAFLADRKTSSYIIGHQLVVDGGSS 262 (264)
T ss_dssp TSSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTTGG
T ss_pred CCCCcCHHHHHHHHHHHhCCcccCCccCceEEeCCChh
Confidence 999999999999999999965 6678888888888763
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=7e-46 Score=362.60 Aligned_cols=240 Identities=21% Similarity=0.284 Sum_probs=210.1
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
|+++||++|||||++|||+++|++|+++|++|++++|++++++++.+++ ..+.++.||+
T Consensus 1 mdl~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~---------------------~~~~~~~~Dv 59 (242)
T d1cyda_ 1 LNFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKEC---------------------PGIEPVCVDL 59 (242)
T ss_dssp CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS---------------------TTCEEEECCT
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc---------------------CCCeEEEEeC
Confidence 5789999999999999999999999999999999999998877665543 2466789999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|++++++++ +++|+||+||||||+.. ..++.+++.++|++++++|+.++++++|+++|.|.++..+|+||+++|
T Consensus 60 ~~~~~v~~~~----~~~g~iDilVnnAg~~~-~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~ii~isS 134 (242)
T d1cyda_ 60 GDWDATEKAL----GGIGPVDLLVNNAALVI-MQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSS 134 (242)
T ss_dssp TCHHHHHHHH----TTCCCCSEEEECCCCCC-CBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred CCHHHHHHHH----HHcCCCeEEEECCcccc-chhHHHHHHHHHHHHHHHHhccchHHHHHhchhhhhhcccCcccccch
Confidence 9999987665 56799999999999987 689999999999999999999999999999998876657899999999
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhcc
Q 010380 333 AGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVP 412 (512)
Q Consensus 333 ~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~ 412 (512)
. ++..+.|+..+|++||+|+.+|+++|+.|++++|||||+|+||+|+|||....... ++. ..+...+.+++
T Consensus 135 ~-~~~~~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrvN~I~PG~i~T~~~~~~~~~--~~~------~~~~~~~~pl~ 205 (242)
T d1cyda_ 135 M-VAHVTFPNLITYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGKKVSAD--PEF------ARKLKERHPLR 205 (242)
T ss_dssp G-GGTSCCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTHHHHHHTCC--HHH------HHHHHHHSTTS
T ss_pred h-hccccCCccccccchHHHHHHHHHHHHHHhCccCeecccCCCCCccCHHHHhhcCC--HHH------HHHHHhcCCCC
Confidence 8 67888999999999999999999999999999999999999999999986432211 111 12234567899
Q ss_pred ccccchhhhhhhhhcCChHHHHHHHHHHhccCccc
Q 010380 413 RIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWF 447 (512)
Q Consensus 413 r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~ 447 (512)
|+..|+|+++++.||++++..+.++..+..||+|.
T Consensus 206 R~~~peeva~~v~fL~S~~s~~itG~~i~vDGG~~ 240 (242)
T d1cyda_ 206 KFAEVEDVVNSILFLLSDRSASTSGGGILVDAGYL 240 (242)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCSSEEEESTTGG
T ss_pred CCcCHHHHHHHHHHHhCchhcCcCCceEEeCcchh
Confidence 99999999999999999999999999999999885
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=100.00 E-value=1.6e-45 Score=363.47 Aligned_cols=248 Identities=20% Similarity=0.243 Sum_probs=218.2
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
++++||++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+. .+.++.++.||+
T Consensus 5 m~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~----------------~g~~~~~~~~Dv 68 (260)
T d1h5qa_ 5 ISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKE----------------FGVKTKAYQCDV 68 (260)
T ss_dssp ECCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHH----------------HTCCEEEEECCT
T ss_pred ccCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHH----------------hCCceEEEEccC
Confidence 5789999999999999999999999999999999999999999888888654 356889999999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|+++++++++++.+++|+||+||||||+.. ..++.+++.++|++++++|+.|+++++|+++|+|.++..++.|++++|
T Consensus 69 ~~~~~v~~~~~~~~~~~g~iDilVnnAg~~~-~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~~g~i~~~~s 147 (260)
T d1h5qa_ 69 SNTDIVTKTIQQIDADLGPISGLIANAGVSV-VKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSS 147 (260)
T ss_dssp TCHHHHHHHHHHHHHHSCSEEEEEECCCCCC-CSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred CCHHHHHHHHHHHHHHhCCCcEecccccccc-cCCHHHhccccccccccccccchhhhhhhhcccccccccceEEEEeec
Confidence 9999999999999999999999999999987 689999999999999999999999999999999977667888888877
Q ss_pred CCCCC------CCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHH
Q 010380 333 AGSGG------SSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETV 406 (512)
Q Consensus 333 ~~a~~------~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~v 406 (512)
..... .+.++..+|++||+|+.+|+++|+.|++++|||||+|+||+|+|+|........ ..+..
T Consensus 148 ~~~~~~~~~~~~~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~i~T~~~~~~~~~~----------~~~~~ 217 (260)
T d1h5qa_ 148 MSSQIINQSSLNGSLTQVFYNSSKAACSNLVKGLAAEWASAGIRVNALSPGYVNTDQTAHMDKKI----------RDHQA 217 (260)
T ss_dssp GGGTSCCEEETTEECSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGGGSCHHH----------HHHHH
T ss_pred cccccccccccccCccccchhhhhhhHHHHHHHHHHHhchhCeEEeecCCCcccCcchhccCHHH----------HHHHH
Confidence 52211 233677899999999999999999999999999999999999999975432211 12234
Q ss_pred HHHhccccccchhhhhhhhhcCChHHHHHHHHHHhccCccc
Q 010380 407 ARTLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWF 447 (512)
Q Consensus 407 A~~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~ 447 (512)
...+++|+..|+|+++++.||++++..+.++..+..||+|.
T Consensus 218 ~~~pl~R~g~pedvA~~v~fL~S~~s~~itG~~i~VDGG~~ 258 (260)
T d1h5qa_ 218 SNIPLNRFAQPEEMTGQAILLLSDHATYMTGGEYFIDGGQL 258 (260)
T ss_dssp HTCTTSSCBCGGGGHHHHHHHHSGGGTTCCSCEEEECTTGG
T ss_pred hcCCCCCCcCHHHHHHHHHHHhcchhCCCcCceEEECCCee
Confidence 55789999999999999999999999888898888888874
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=100.00 E-value=1.9e-45 Score=364.53 Aligned_cols=250 Identities=22% Similarity=0.317 Sum_probs=213.5
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
+|+||++|||||++|||+++|++|+++|++|++++|++++++++.+++.. ...+.++.||++
T Consensus 3 rL~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~------------------~~~~~~~~~Dv~ 64 (268)
T d2bgka1 3 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGS------------------PDVISFVHCDVT 64 (268)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC------------------TTTEEEEECCTT
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcC------------------CCceEEEEccCC
Confidence 58999999999999999999999999999999999999999888877642 245778999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCC-CCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKG-FKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~-~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
|+++++++++++.+++|+||+||||||+... ...+.+.+.|+|++++++|+.|+++++|+++|+|+++ +.|+||+++|
T Consensus 65 ~~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~-~~g~ii~iss 143 (268)
T d2bgka1 65 KDEDVRNLVDTTIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPA-KKGSIVFTAS 143 (268)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGG-TCEEEEEECC
T ss_pred CHHHHHHHHHHHHHHcCCcceeccccccccCCCcccccCcHHHHHHHHHHhhcchhhhhhhhcchHhhc-CCCCcccccc
Confidence 9999999999999999999999999998652 2357889999999999999999999999999999987 6789999998
Q ss_pred CCCCCCCCCC-cchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhc
Q 010380 333 AGSGGSSTPL-TAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLV 411 (512)
Q Consensus 333 ~~a~~~~~p~-~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l 411 (512)
. ++..+.++ ...|++||+|+++|+++|+.|++++|||||+|+||+|+|||..+............ ......++
T Consensus 144 ~-~~~~~~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~-----~~~~~~~~ 217 (268)
T d2bgka1 144 I-SSFTAGEGVSHVYTATKHAVLGLTTSLCTELGEYGIRVNCVSPYIVASPLLTDVFGVDSSRVEEL-----AHQAANLK 217 (268)
T ss_dssp G-GGTCCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCSCCCCTTSSSCCHHHHHHH-----HHHTCSSC
T ss_pred c-cccccccccccccchhHHHHHhCHHHHHHHhChhCeEEEecCCCCccChHHhhhhcCCHHHHHHH-----HHhccccC
Confidence 8 45554444 45899999999999999999999999999999999999999865433222111110 01112356
Q ss_pred cccccchhhhhhhhhcCChHHHHHHHHHHhccCcccc
Q 010380 412 PRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWFD 448 (512)
Q Consensus 412 ~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~~ 448 (512)
+|+..|+|+++++.||++++..+.+++.+..||+|..
T Consensus 218 gr~~~pedvA~~v~fL~S~~s~~itGq~i~VDGG~t~ 254 (268)
T d2bgka1 218 GTLLRAEDVADAVAYLAGDESKYVSGLNLVIDGGYTR 254 (268)
T ss_dssp SCCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGG
T ss_pred CCCcCHHHHHHHHHHHhChhhCCccCceEEECcCccc
Confidence 7899999999999999999999999999999999854
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.7e-45 Score=367.82 Aligned_cols=251 Identities=23% Similarity=0.380 Sum_probs=222.3
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
.|+||++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+.... ..+.++.++.||++
T Consensus 9 ~L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~------------~~~~~~~~~~~Dvs 76 (297)
T d1yxma1 9 LLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPP------------TKQARVIPIQCNIR 76 (297)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCT------------TCCCCEEEEECCTT
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhcc------------ccCceEEEEeccCC
Confidence 589999999999999999999999999999999999999999999998764322 13578999999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
|+++++++++++.+++|+||+||||||+.. ..++.+.+.++|++++++|+.|+++++|+++|.|.++ ++|+||++|+.
T Consensus 77 ~~~~v~~~~~~~~~~~G~iDiLVnnAg~~~-~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~-~~g~Ii~~ss~ 154 (297)
T d1yxma1 77 NEEEVNNLVKSTLDTFGKINFLVNNGGGQF-LSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKE-HGGSIVNIIVP 154 (297)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCCC-CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHH-HCEEEEEECCC
T ss_pred CHHHHHHHHHHHHHHhCCeEEEEeeccccc-cCchhhhhhhhhhhhhcccccchhhHHHHHHHhhccc-ccccccccccc
Confidence 999999999999999999999999999987 7899999999999999999999999999999999987 67889988664
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhccc
Q 010380 334 GSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPR 413 (512)
Q Consensus 334 ~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~r 413 (512)
...+.|+...|++||+|+.+|+++||.|++++|||||+|+||+|+|+|.........++.. .+...+.+++|
T Consensus 155 --~~~~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~------~~~~~~~plgR 226 (297)
T d1yxma1 155 --TKAGFPLAVHSGAARAGVYNLTKSLALEWACSGIRINCVAPGVIYSQTAVENYGSWGQSFF------EGSFQKIPAKR 226 (297)
T ss_dssp --CTTCCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCCTGGGTTSGGGGGGGG------TTGGGGSTTSS
T ss_pred --ccccccccccchhHHHHHHHHHHHHHHHhcccCceEEEeeeCcCcCcchhhhccccCHHHH------HHHHhcCCCCC
Confidence 4567889999999999999999999999999999999999999999997654433322221 12234567899
Q ss_pred cccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 414 IRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 414 ~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
+..|+|+++++.||+++...+.++..+..||++
T Consensus 227 ~g~pedvA~~v~fL~Sd~s~~iTG~~i~VDGG~ 259 (297)
T d1yxma1 227 IGVPEEVSSVVCFLLSPAASFITGQSVDVDGGR 259 (297)
T ss_dssp CBCTHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred CcCHHHHHHHHHHHhCchhcCcCCcEEEeCcCh
Confidence 999999999999999999999999999999887
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=100.00 E-value=6.7e-45 Score=358.91 Aligned_cols=253 Identities=22% Similarity=0.344 Sum_probs=219.3
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
++|+||+||||||++|||+++|++|+++|++|++++|++++++++.+++.+ .+.+++++.||+
T Consensus 2 f~L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~-----------------~~~~~~~~~~D~ 64 (258)
T d1ae1a_ 2 WSLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWRE-----------------KGLNVEGSVCDL 64 (258)
T ss_dssp CCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-----------------TTCCEEEEECCT
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh-----------------cCCCceEEEeec
Confidence 579999999999999999999999999999999999999999998888866 467888999999
Q ss_pred CChhhHHHHHHHHHHHc-CCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeec
Q 010380 253 CEPADVQKLSNFAVNEF-GSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD 331 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~-g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vS 331 (512)
+|+++++++++++.+++ +++|+||||||... ..++.+++.++|++++++|+.++++++++++|.|.++ +.|+||++|
T Consensus 65 s~~~~~~~~~~~~~~~~~g~idilinnag~~~-~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~-~~g~ii~is 142 (258)
T d1ae1a_ 65 LSRTERDKLMQTVAHVFDGKLNILVNNAGVVI-HKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKAS-QNGNVIFLS 142 (258)
T ss_dssp TCHHHHHHHHHHHHHHTTSCCCEEEECCCCCC-CCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TSEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHhCCCcEEEeccccccc-cCccccCCHHHHhhhhhhccccccccccccccccccc-ccccccccc
Confidence 99999999999999998 68999999999987 6899999999999999999999999999999999987 689999999
Q ss_pred CCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhc
Q 010380 332 GAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLV 411 (512)
Q Consensus 332 S~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l 411 (512)
|. ++..+.|+..+|+++|+|+++|++.|++|++++|||||+|+||+|+|||........... .. ...+...+.++
T Consensus 143 S~-~~~~~~~~~~~Y~~sK~al~~lt~~lA~el~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~-~~---~~~~~~~~~pl 217 (258)
T d1ae1a_ 143 SI-AGFSALPSVSLYSASKGAINQMTKSLACEWAKDNIRVNSVAPGVILTPLVETAIKKNPHQ-KE---EIDNFIVKTPM 217 (258)
T ss_dssp CG-GGTSCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC-------------C-HH---HHHHHHHHSTT
T ss_pred cc-ccccccccchhHHHHHHHHHHHHHHHHHhcCcCcEEEEEEeeCcccCcchhhhhhhhhhh-HH---HHHHHHhcCCC
Confidence 98 678899999999999999999999999999999999999999999999975533221110 00 01233456789
Q ss_pred cccccchhhhhhhhhcCChHHHHHHHHHHhccCccccc
Q 010380 412 PRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWFDD 449 (512)
Q Consensus 412 ~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~~~ 449 (512)
+|+..|+|+++++.||+++...+.++..+..||+|...
T Consensus 218 gR~~~pediA~~v~fL~S~~s~~itG~~i~vDGG~s~~ 255 (258)
T d1ae1a_ 218 GRAGKPQEVSALIAFLCFPAASYITGQIIWADGGFTAN 255 (258)
T ss_dssp CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGGC
T ss_pred CCCcCHHHHHHHHHHHhChhhCCCcCcEEEeCCCeecc
Confidence 99999999999999999999999999999999998643
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=100.00 E-value=3.3e-45 Score=363.68 Aligned_cols=260 Identities=20% Similarity=0.228 Sum_probs=214.8
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
++++||++|||||++|||+++|++|+++|++|++++|++++++++.+++.+.. ..+.++.+++||+
T Consensus 1 prL~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~--------------~~~~~~~~~~~Dv 66 (272)
T d1xkqa_ 1 PRFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSG--------------VSEKQVNSVVADV 66 (272)
T ss_dssp CTTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT--------------CCGGGEEEEECCT
T ss_pred CCCCCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--------------CCCCceEEEEccC
Confidence 36899999999999999999999999999999999999999999998886521 1245799999999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCC----cCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEE
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPL----LQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIF 328 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~----~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV 328 (512)
+|+++++++++++.+++|+||+||||||+.. ..++ .+.+.++|++++++|+.++++++|+++|+|+++ +|.+|
T Consensus 67 s~~~~v~~~~~~~~~~~g~iDilvnnAG~~~-~~~~~~~~~d~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~--~g~iI 143 (272)
T d1xkqa_ 67 TTEDGQDQIINSTLKQFGKIDVLVNNAGAAI-PDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVAS--KGEIV 143 (272)
T ss_dssp TSHHHHHHHHHHHHHHHSCCCEEEECCCCCC-CCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEE
T ss_pred CCHHHHHHHHHHHHHHhCCceEEEeCCcccC-cccccccchhccHHHHHHHHHhhhhHHHHHHHhhccccccc--CCccc
Confidence 9999999999999999999999999999876 3333 567888999999999999999999999999875 45666
Q ss_pred eecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHH
Q 010380 329 NMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVAR 408 (512)
Q Consensus 329 ~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~ 408 (512)
+++|+.++..+.|+..+|++||+|+.+|+++|+.|++++|||||+|+||+|+|+|........... .............
T Consensus 144 ~~~Ss~a~~~~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~-~~~~~~~~~~~~~ 222 (272)
T d1xkqa_ 144 NVSSIVAGPQAQPDFLYYAIAKAALDQYTRSTAIDLAKFGIRVNSVSPGMVETGFTNAMGMPDQAS-QKFYNFMASHKEC 222 (272)
T ss_dssp EECCGGGSSSCCCSSHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCSSHHHHTTCCHHHH-HHHHHHHHHCTTT
T ss_pred cccchhccccCCCCcchhhhHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCcchhhhccCCchHHH-HHHHHHHHHHhcC
Confidence 665554678889999999999999999999999999999999999999999999975432211110 0000000111233
Q ss_pred HhccccccchhhhhhhhhcCChHHH-HHHHHHHhccCcccccc
Q 010380 409 TLVPRIRVVKGSGKAINYLTPPRIL-LALVTAWLRRGRWFDDQ 450 (512)
Q Consensus 409 ~~l~r~~~~~~va~~v~~L~s~~~~-~~~~~~~~~~g~~~~~~ 450 (512)
.+++|+..|+|+++++.||+++++. +.++..+..||++.-..
T Consensus 223 ~PlgR~g~pediA~~v~fL~S~~as~~iTG~~i~vDGG~~l~~ 265 (272)
T d1xkqa_ 223 IPIGAAGKPEHIANIILFLADRNLSFYILGQSIVADGGTSLVM 265 (272)
T ss_dssp CTTSSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTTGGGCB
T ss_pred CCCCCCcCHHHHHHHHHHHhCcchhCCccCeEEEeCcCHHHhc
Confidence 5789999999999999999998764 67888888888875433
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=1.7e-45 Score=358.76 Aligned_cols=233 Identities=21% Similarity=0.317 Sum_probs=199.8
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
.+++||++|||||++|||+++|++|+++|++|++++|+.+.+ .++..++||+
T Consensus 3 psl~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~----------------------------~~~~~~~~Dv 54 (237)
T d1uzma1 3 PPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAP----------------------------KGLFGVEVDV 54 (237)
T ss_dssp CCCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCC----------------------------TTSEEEECCT
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchh----------------------------cCceEEEEec
Confidence 578999999999999999999999999999999999986542 3456799999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|+++++++++++.+++|+||+||||||+.. ..++.+.+.|+|++++++|+.++++++|+++|+|+++ +.|+||++||
T Consensus 55 ~~~~~v~~~~~~~~~~~g~iDiLVnnAG~~~-~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~g~Iv~isS 132 (237)
T d1uzma1 55 TDSDAVDRAFTAVEEHQGPVEVLVSNAGLSA-DAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRN-KFGRMIFIGS 132 (237)
T ss_dssp TCHHHHHHHHHHHHHHHSSCSEEEEECSCCC------CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECC
T ss_pred CCHHHHHHHHHHHHHhcCCceEEEeeecccc-cccHhhCCHHHHHHHHHhhhhhhhhhhhhhhhccccc-CCCceEEEcc
Confidence 9999999999999999999999999999987 6899999999999999999999999999999999998 6789999999
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhcc
Q 010380 333 AGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVP 412 (512)
Q Consensus 333 ~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~ 412 (512)
. ++..+.++..+|++||+|+++|+++|+.|++++|||||+|+||+|+|+|......... .......+++
T Consensus 133 ~-~~~~~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~v~T~~~~~~~~~~~----------~~~~~~~pl~ 201 (237)
T d1uzma1 133 V-SGLWGIGNQANYAASKAGVIGMARSIARELSKANVTANVVAPGYIDTDMTRALDERIQ----------QGALQFIPAK 201 (237)
T ss_dssp C-CC-----CCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHSCHHHH----------HHHGGGCTTC
T ss_pred h-hhccCCcccHHHHHHHHHHHHHHHHHHhhhhcCCceeeeeeeCcCCChhhhccCHHHH----------HHHHhcCCCC
Confidence 8 6778889999999999999999999999999999999999999999998754321111 1223346789
Q ss_pred ccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 413 RIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 413 r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
|+..|+|+++++.||++++..+.++..+..||++
T Consensus 202 R~~~pedvA~~v~fL~S~~s~~itG~~i~vdGG~ 235 (237)
T d1uzma1 202 RVGTPAEVAGVVSFLASEDASYISGAVIPVDGGM 235 (237)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred CCcCHHHHHHHHHHHhCchhcCCcCCeEEECCCC
Confidence 9999999999999999999988888888888775
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.2e-45 Score=359.46 Aligned_cols=240 Identities=22% Similarity=0.304 Sum_probs=210.3
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
+.|+||++|||||++|||+++|++|+++|++|++++|++++++++.+++ ..+.++.+|+
T Consensus 3 ~~L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~---------------------~~~~~~~~Dv 61 (244)
T d1pr9a_ 3 LFLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVREC---------------------PGIEPVCVDL 61 (244)
T ss_dssp CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS---------------------TTCEEEECCT
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhc---------------------CCCeEEEEeC
Confidence 4689999999999999999999999999999999999998887766543 2366789999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|++++++++ +++|+||+||||||+.. ..++.+.+.++|++++++|+.++++++++++|.|.++.+.|+||++||
T Consensus 62 ~d~~~v~~~~----~~~g~iDilVnnAg~~~-~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~Ii~isS 136 (244)
T d1pr9a_ 62 GDWEATERAL----GSVGPVDLLVNNAAVAL-LQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSS 136 (244)
T ss_dssp TCHHHHHHHH----TTCCCCCEEEECCCCCC-CBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred CCHHHHHHHH----HHhCCceEEEecccccc-ccchhhhhHHHHHHHHHHhhhhhhHHHHHhhhHHHHhCCcceEeeccc
Confidence 9999987765 56799999999999987 789999999999999999999999999999998766556899999999
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhcc
Q 010380 333 AGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVP 412 (512)
Q Consensus 333 ~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~ 412 (512)
. ++..+.|+..+|++||+|+++|+++|+.|++++|||||+|+||+|+|+|.......... ......+.+++
T Consensus 137 ~-~~~~~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~v~T~~~~~~~~~~~~--------~~~~~~~~pl~ 207 (244)
T d1pr9a_ 137 Q-CSQRAVTNHSVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQATWSDPHK--------AKTMLNRIPLG 207 (244)
T ss_dssp G-GGTSCCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSHHHHTTSCSHHH--------HHHHHTTCTTC
T ss_pred c-cccccccchhhhhhhHHHHHHHHHHHHHHhCCCcEEEEEEeeCcCcChHHhhhccChHH--------HHHHHhcCCCC
Confidence 8 67888999999999999999999999999999999999999999999997543322111 11223456789
Q ss_pred ccccchhhhhhhhhcCChHHHHHHHHHHhccCccc
Q 010380 413 RIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWF 447 (512)
Q Consensus 413 r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~ 447 (512)
|+..|+|+++++.||+++...+.++..+..||+|.
T Consensus 208 R~~~peevA~~v~fL~S~~a~~itG~~i~vDGG~~ 242 (244)
T d1pr9a_ 208 KFAEVEHVVNAILFLLSDRSGMTTGSTLPVEGGFW 242 (244)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred CCcCHHHHHHHHHHHhCchhCCcCCcEEEECccHh
Confidence 99999999999999999999999999999999885
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=100.00 E-value=8.2e-46 Score=364.44 Aligned_cols=244 Identities=16% Similarity=0.212 Sum_probs=212.8
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
+|+||++|||||++|||+++|+.|+++|++|++++|++++++++.+++ +.+..+++||++
T Consensus 3 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~Dv~ 62 (253)
T d1hxha_ 3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAEL--------------------GERSMFVRHDVS 62 (253)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH--------------------CTTEEEECCCTT
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh--------------------CCCeEEEEeecC
Confidence 589999999999999999999999999999999999999888777665 246778999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
|+++++++++++.+++|+||+||||||+.. ..++.+.+.|+|++++++|+.++++++|+++|+|+++ +|+||++||.
T Consensus 63 ~~~~~~~~~~~~~~~~g~iDilVnnAG~~~-~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~--~G~Iv~isS~ 139 (253)
T d1hxha_ 63 SEADWTLVMAAVQRRLGTLNVLVNNAGILL-PGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKET--GGSIINMASV 139 (253)
T ss_dssp CHHHHHHHHHHHHHHHCSCCEEEECCCCCC-CBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTT--CEEEEEECCG
T ss_pred CHHHHHHHHHHHHHHhCCCCeEEecccccC-CCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CCceecccch
Confidence 999999999999999999999999999987 6889999999999999999999999999999999764 6999999998
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCC--CCeEEEEEeCCcccCCcccCCcchh-hhhhhhhhcCCHHHHHHHh
Q 010380 334 GSGGSSTPLTAVYGSTKCGLRQLQASLFKESKR--SKVGVHTASPGMVLTDLLLSGSTIQ-NKQMFNIICELPETVARTL 410 (512)
Q Consensus 334 ~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~--~GIrVn~V~PG~V~T~~~~~~~~~~-~~~~~~~~~~~pe~vA~~~ 410 (512)
++..+.++.++|++||+|+.+|+++|+.|+++ +|||||+|+||+|+|+|.....+.. .++... . .....+
T Consensus 140 -~~~~~~~~~~~Y~asKaal~~lt~~lA~e~~~~g~~IrVN~I~PG~i~T~~~~~~~~~~~~~~~~~---~---~~~~~~ 212 (253)
T d1hxha_ 140 -SSWLPIEQYAGYSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIYTPMMQASLPKGVSKEMVL---H---DPKLNR 212 (253)
T ss_dssp -GGTSCCTTBHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESEECCHHHHHHSCTTCCHHHHB---C---BTTTBT
T ss_pred -hhhcCccccccccchhHHHHHHHHHHHHHHhhcCCCEEEEEEeECCCcCHhHHhhCcchhhHHHHH---h---Cccccc
Confidence 67888999999999999999999999999987 4599999999999999864322111 111110 0 011235
Q ss_pred ccccccchhhhhhhhhcCChHHHHHHHHHHhccCccc
Q 010380 411 VPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWF 447 (512)
Q Consensus 411 l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~ 447 (512)
++|+..|+|+++++.||++++..+.++..+..||+|.
T Consensus 213 ~gr~~~pedvA~~v~fL~S~~s~~itG~~i~VDGG~~ 249 (253)
T d1hxha_ 213 AGRAYMPERIAQLVLFLASDESSVMSGSELHADNSIL 249 (253)
T ss_dssp TCCEECHHHHHHHHHHHHSGGGTTCCSCEEEESSSCT
T ss_pred cCCCCCHHHHHHHHHHHhChhhCCCcCcEEEECccHh
Confidence 6788999999999999999999999999999999885
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=100.00 E-value=1.9e-44 Score=358.61 Aligned_cols=258 Identities=20% Similarity=0.227 Sum_probs=217.1
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
+++||++|||||++|||+++|++|+++|++|++++|++++++++.+++.+... .+.++.++.||++
T Consensus 1 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~--------------~~~~~~~~~~Dv~ 66 (274)
T d1xhla_ 1 RFSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGV--------------PAEKINAVVADVT 66 (274)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--------------CGGGEEEEECCTT
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC--------------CCcceEEEEeeCC
Confidence 47899999999999999999999999999999999999999999999876311 2357899999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCC-CCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKG-FKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~-~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
|+++++++++++.+++|+||+||||||.... ..+..+.+.|+|++++++|+.++++++|+++|+|+++ ++|+|+++||
T Consensus 67 ~~~~v~~~~~~~~~~~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~g~ii~~ss 145 (274)
T d1xhla_ 67 EASGQDDIINTTLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKT-KGEIVNVSSI 145 (274)
T ss_dssp SHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEECCG
T ss_pred CHHHHHHHHHHHHHHcCCceEEEeecccccccccccccCCHHHHHHHHhhccccccccccccccccccc-ccccccchhh
Confidence 9999999999999999999999999997642 2345667899999999999999999999999999987 5788888877
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhh--hhhhhhhcCCHHHHHHHh
Q 010380 333 AGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQN--KQMFNIICELPETVARTL 410 (512)
Q Consensus 333 ~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~--~~~~~~~~~~pe~vA~~~ 410 (512)
. ++..+.++.++|++||+|+.+|+++|+.|++++|||||+|+||+|+|||......... ....... .+.....|
T Consensus 146 ~-~~~~~~~~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~---~~~~~~iP 221 (274)
T d1xhla_ 146 V-AGPQAHSGYPYYACAKAALDQYTRCTAIDLIQHGVRVNSVSPGAVATGFMGAMGLPETASDKLYSFI---GSRKECIP 221 (274)
T ss_dssp G-GSSSCCTTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHH---HHCTTTCT
T ss_pred h-hccccCCCCceehhhhhHHHHHHHHHHHHHhHhCCceeeeccCCCcCchhhhhcccchhhHHHHHHH---HHHHcCCC
Confidence 6 6778889999999999999999999999999999999999999999998754322111 1111100 01112357
Q ss_pred ccccccchhhhhhhhhcCCh-HHHHHHHHHHhccCcccccc
Q 010380 411 VPRIRVVKGSGKAINYLTPP-RILLALVTAWLRRGRWFDDQ 450 (512)
Q Consensus 411 l~r~~~~~~va~~v~~L~s~-~~~~~~~~~~~~~g~~~~~~ 450 (512)
++|+..|+|+++++.||+++ ...+.++..+..||++.-..
T Consensus 222 lgR~g~pediA~~v~fL~S~d~s~~itG~~i~vDGG~~l~~ 262 (274)
T d1xhla_ 222 VGHCGKPEEIANIIVFLADRNLSSYIIGQSIVADGGSTLVM 262 (274)
T ss_dssp TSSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTTGGGCC
T ss_pred CCCCcCHHHHHHHHHHHcCCccccCccCcEEEeCcCHHHhc
Confidence 89999999999999999996 57788999999998875433
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=100.00 E-value=3.2e-44 Score=357.31 Aligned_cols=252 Identities=21% Similarity=0.196 Sum_probs=208.3
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
|+|+||++|||||++|||+++|++|+++|++|++++|++++++++.+++ +.++.++.+|+
T Consensus 1 M~L~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~--------------------~~~~~~~~~Dv 60 (276)
T d1bdba_ 1 MKLKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELETDH--------------------GDNVLGIVGDV 60 (276)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH--------------------GGGEEEEECCT
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc--------------------CCCeeEEeccc
Confidence 5789999999999999999999999999999999999998887665543 35788999999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCC----CcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEE
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKP----LLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIF 328 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~----~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV 328 (512)
+|+++++++++++.+++|++|+||||||+...... ..+.++++|+++|++|+.|+++++|+++|+|+++ +|+||
T Consensus 61 ~~~~~~~~~~~~~~~~~g~idilvnnAG~~~~~~~~~~~~~e~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~--~g~iI 138 (276)
T d1bdba_ 61 RSLEDQKQAASRCVARFGKIDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYIHAVKACLPALVAS--RGNVI 138 (276)
T ss_dssp TCHHHHHHHHHHHHHHHSCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEE
T ss_pred ccHHHHHHHHHHHHHHhCCcccccccccccCCCCccccccccchhhhhhHHHHHhhHHHHHHHHHHHHHHHhc--CCCce
Confidence 99999999999999999999999999998652222 3445567899999999999999999999999875 47899
Q ss_pred eecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHH
Q 010380 329 NMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVAR 408 (512)
Q Consensus 329 ~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~ 408 (512)
+++|. ++..+.|+.++|++||+|+.+|+++||.|+++. ||||+|+||+|+|+|.........................
T Consensus 139 ~i~S~-~~~~~~~~~~~Y~asKaal~~ltr~lA~ela~~-IrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (276)
T d1bdba_ 139 FTISN-AGFYPNGGGPLYTAAKHAIVGLVRELAFELAPY-VRVNGVGSGGINSDLRGPSSLGMGSKAISTVPLADMLKSV 216 (276)
T ss_dssp EECCG-GGTSTTSSCHHHHHHHHHHHHHHHHHHHHHTTT-CEEEEEEECCCCSCCCCCGGGC---------CHHHHHTTT
T ss_pred eeeec-hhccCCCCCchHHHHHHHHHHHHHHHHHHhhcc-eEEcccCCCCEecCcCCccchhhhhhccCcHHHHHHHHhc
Confidence 99887 677889999999999999999999999999975 9999999999999997543322111111100000112234
Q ss_pred HhccccccchhhhhhhhhcCCh-HHHHHHHHHHhccCcccc
Q 010380 409 TLVPRIRVVKGSGKAINYLTPP-RILLALVTAWLRRGRWFD 448 (512)
Q Consensus 409 ~~l~r~~~~~~va~~v~~L~s~-~~~~~~~~~~~~~g~~~~ 448 (512)
.+++|+..|+|++.++.||+++ ...+.++..+..||+|..
T Consensus 217 ~PlgR~g~peeva~~v~fL~S~~~a~~itG~~i~VDGG~~~ 257 (276)
T d1bdba_ 217 LPIGRMPEVEEYTGAYVFFATRGDAAPATGALLNYDGGLGV 257 (276)
T ss_dssp CTTSSCCCGGGGSHHHHHHHCHHHHTTCSSCEEEESSSGGG
T ss_pred CCCCCCcCHHHHHHHHHHHcCCcccCCeeCcEEEECcChhh
Confidence 6789999999999999999985 678899999999998853
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Probab=100.00 E-value=2.2e-44 Score=353.78 Aligned_cols=242 Identities=15% Similarity=0.133 Sum_probs=208.6
Q ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhhH
Q 010380 179 NVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPADV 258 (512)
Q Consensus 179 ~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~sv 258 (512)
|+|||||++|||+++|++|+++|++|++++|+.+.++++...... +..||++|++++
T Consensus 2 TAlVTGas~GiG~aiA~~la~~Ga~V~i~~r~~~~~~~~~~~~~~-----------------------~~~~dv~~~~~~ 58 (252)
T d1zmta1 2 TAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAFAET-----------------------YPQLKPMSEQEP 58 (252)
T ss_dssp EEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHHHH-----------------------CTTSEECCCCSH
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhhhCc-----------------------EEEeccCCHHHH
Confidence 789999999999999999999999999999998887665332211 246899999999
Q ss_pred HHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCC
Q 010380 259 QKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGS 338 (512)
Q Consensus 259 ~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~~~ 338 (512)
+++++++.+++|+||+||||||+.....++.+++.|+|++++++|+.++++++|+++|+|+++ +.|+||++||. ++..
T Consensus 59 ~~~~~~~~~~~G~iDiLVnNAg~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~~~~~~~m~~~-~~G~IV~isS~-~~~~ 136 (252)
T d1zmta1 59 AELIEAVTSAYGQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKR-KSGHIIFITSA-TPFG 136 (252)
T ss_dssp HHHHHHHHHHHSCCCEEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEECCS-TTTS
T ss_pred HHHHHHHHHHcCCCCEEEECCcCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhccc-ccceeeccccc-cccc
Confidence 999999999999999999999987656789999999999999999999999999999999987 67999999998 6888
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhccccccch
Q 010380 339 STPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPRIRVVK 418 (512)
Q Consensus 339 ~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~r~~~~~ 418 (512)
+.++..+|++||+|+++|+++|+.|++++|||||+|+||+|+|+|............. .....+.....+++|+..|+
T Consensus 137 ~~~~~~~Y~asKaal~~lt~~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~--~e~~~~~~~~~pl~R~g~pe 214 (252)
T d1zmta1 137 PWKELSTYTSARAGACTLANALSKELGEYNIPVFAIGPNYLHSEDSPYFYPTEPWKTN--PEHVAHVKKVTALQRLGTQK 214 (252)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCCEEEEEESSBCCBTCCSSCBHHHHTTC--HHHHHHHHHHSSSSSCBCHH
T ss_pred ccccccccccccccHHHHHHHHHHHhcccCcEEEEEecCCCcCcchhhhhhcccccCC--HHHHHHHHhcCCCCCCcCHH
Confidence 8999999999999999999999999999999999999999999997654332211100 00011223456789999999
Q ss_pred hhhhhhhhcCChHHHHHHHHHHhccCccc
Q 010380 419 GSGKAINYLTPPRILLALVTAWLRRGRWF 447 (512)
Q Consensus 419 ~va~~v~~L~s~~~~~~~~~~~~~~g~~~ 447 (512)
|+++++.||+++...+.++..+..||+|.
T Consensus 215 dvA~~v~fL~S~~s~~iTG~~i~vdGG~~ 243 (252)
T d1zmta1 215 ELGELVAFLASGSCDYLTGQVFWLAGGFP 243 (252)
T ss_dssp HHHHHHHHHHTTSCGGGTTCEEEESTTCC
T ss_pred HHHHHHHHHhCchhcCCcCCeEEECCCce
Confidence 99999999999999999999999999984
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=100.00 E-value=2.6e-43 Score=343.88 Aligned_cols=216 Identities=25% Similarity=0.391 Sum_probs=194.5
Q ss_pred CEEEEECCCChHHHHHHHHHHHCCCE-------EEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEc
Q 010380 178 RNVVITGSTRGLGKALAREFLLSGDR-------VVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIAC 250 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~Ga~-------Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~ 250 (512)
++||||||++|||+++|++|+++|++ |++++|+.++++++.+++++ .+.++.++.|
T Consensus 2 ~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~-----------------~g~~~~~~~~ 64 (240)
T d2bd0a1 2 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRA-----------------EGALTDTITA 64 (240)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHT-----------------TTCEEEEEEC
T ss_pred CEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHh-----------------cCCcEEEEEe
Confidence 57899999999999999999999997 99999999999999888865 4678999999
Q ss_pred cCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEee
Q 010380 251 DVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNM 330 (512)
Q Consensus 251 Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~v 330 (512)
|++|+++++++++++.+++|+||+||||||+.. ..++.+++.++|++++++|+.|+++++|+++|+|+++ ++|+||++
T Consensus 65 Dvt~~~~v~~~~~~~~~~~g~iDilvnnAg~~~-~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~-~~G~Ii~i 142 (240)
T d2bd0a1 65 DISDMADVRRLTTHIVERYGHIDCLVNNAGVGR-FGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQ-HSGHIFFI 142 (240)
T ss_dssp CTTSHHHHHHHHHHHHHHTSCCSEEEECCCCCC-CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEE
T ss_pred cCCCHHHHHHHHHHHHHHcCCcceeeccccccc-CCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhc-CCCceEEE
Confidence 999999999999999999999999999999987 7899999999999999999999999999999999987 67999999
Q ss_pred cCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHh
Q 010380 331 DGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTL 410 (512)
Q Consensus 331 SS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~ 410 (512)
||. ++..+.|+.++|++||+|+.+|+++|+.|++++|||||+|+||+|+|||+.......
T Consensus 143 sS~-~~~~~~~~~~~Y~asK~al~~lt~~la~el~~~gIrvn~i~PG~v~T~~~~~~~~~~------------------- 202 (240)
T d2bd0a1 143 TSV-AATKAFRHSSIYCMSKFGQRGLVETMRLYARKCNVRITDVQPGAVYTPMWGKVDDEM------------------- 202 (240)
T ss_dssp CCG-GGTSCCTTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCSTTTCCCCSTT-------------------
T ss_pred ech-hhcCCCCCChHHHHHHHHHHHHHHHHHHHhCcCCeEEEEeeeCcccCchhhhcCHhh-------------------
Confidence 998 788899999999999999999999999999999999999999999999976532211
Q ss_pred ccccccchhhhhhhhhcCChHH
Q 010380 411 VPRIRVVKGSGKAINYLTPPRI 432 (512)
Q Consensus 411 l~r~~~~~~va~~v~~L~s~~~ 432 (512)
-.++..|+|+++++.||+++..
T Consensus 203 ~~~~~~PedvA~~v~~l~s~~~ 224 (240)
T d2bd0a1 203 QALMMMPEDIAAPVVQAYLQPS 224 (240)
T ss_dssp GGGSBCHHHHHHHHHHHHTSCT
T ss_pred HhcCCCHHHHHHHHHHHHcCCc
Confidence 1234567778888888877543
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=100.00 E-value=5.9e-44 Score=351.95 Aligned_cols=250 Identities=22% Similarity=0.279 Sum_probs=212.7
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEc-ChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASR-SSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R-~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
+|.||+||||||++|||+++|++|+++|++|++++| +++.++++.+++.+ .+.+++++.||+
T Consensus 3 ~L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~-----------------~g~~~~~~~~D~ 65 (259)
T d1ja9a_ 3 PLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKK-----------------LGAQGVAIQADI 65 (259)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH-----------------TTCCEEEEECCT
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHH-----------------cCCCceEecCCC
Confidence 689999999999999999999999999999998755 55667777777765 567899999999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|+++++++++++.+++|+||+||||||... ..++.+.+.++|++.+++|+.++++++|+++|+|+++ +++++++|
T Consensus 66 ~~~~~v~~~~~~~~~~~g~idilinnag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~---g~~iii~s 141 (259)
T d1ja9a_ 66 SKPSEVVALFDKAVSHFGGLDFVMSNSGMEV-WCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRG---GRIILTSS 141 (259)
T ss_dssp TSHHHHHHHHHHHHHHHSCEEEEECCCCCCC-CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEE---EEEEEECC
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEecccccc-ccccccchHHHHHHHHhhccceeeeehhhhhhhhhcC---Cccccccc
Confidence 9999999999999999999999999999987 7889999999999999999999999999999999754 56777766
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHH-----HH
Q 010380 333 AGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPET-----VA 407 (512)
Q Consensus 333 ~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~-----vA 407 (512)
..+...+.|++..|++||+|+.+|+++|++|++++|||||+|+||+|+|+|.......... .......+++ ..
T Consensus 142 ~~~~~~~~~~~~~Y~asK~al~~l~r~lA~e~~~~gIrvN~I~PG~i~T~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 219 (259)
T d1ja9a_ 142 IAAVMTGIPNHALYAGSKAAVEGFCRAFAVDCGAKGVTVNCIAPGGVKTDMFDENSWHYAP--GGYKGMPQEKIDEGLAN 219 (259)
T ss_dssp GGGTCCSCCSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGTST--TCCTTCCHHHHHHHHHH
T ss_pred ccccccCCCCchhHHHHHHHHHHHHHHHHHHHhhcCeEEeccCcCCccChhhhhhhhhhhh--hhcccCCHHHHHHHHHh
Confidence 5455667899999999999999999999999999999999999999999987542211110 0011112222 34
Q ss_pred HHhccccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 408 RTLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 408 ~~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
..+++|+..|+|+++++.||+++...+.++..+..||+|
T Consensus 220 ~~pl~R~g~p~eVa~~v~fL~S~~a~~itG~~i~vDGG~ 258 (259)
T d1ja9a_ 220 MNPLKRIGYPADIGRAVSALCQEESEWINGQVIKLTGGG 258 (259)
T ss_dssp TSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTC
T ss_pred CCCCCCCcCHHHHHHHHHHHhCchhcCCcCceEEeCCCC
Confidence 467899999999999999999999988888888888876
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=100.00 E-value=2.4e-43 Score=344.33 Aligned_cols=238 Identities=22% Similarity=0.278 Sum_probs=204.3
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
+++||++|||||++|||+++|++|+++|++|++++|+.+++++..++ .+.++.+++||++
T Consensus 2 ~l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~--------------------~~~~~~~~~~Dls 61 (241)
T d2a4ka1 2 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAA--------------------LEAEAIAVVADVS 61 (241)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT--------------------CCSSEEEEECCTT
T ss_pred cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH--------------------cCCceEEEEecCC
Confidence 57999999999999999999999999999999999999877654443 3467889999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
++++++++++++.+++|+||+||||||... ..++.+.+.++|++++++|+.+++.++|+++|+|.++ +.|+++||.
T Consensus 62 ~~~~i~~~~~~i~~~~g~iDiLinnAg~~~-~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~---~~i~~~ss~ 137 (241)
T d2a4ka1 62 DPKAVEAVFAEALEEFGRLHGVAHFAGVAH-SALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEG---GSLVLTGSV 137 (241)
T ss_dssp SHHHHHHHHHHHHHHHSCCCEEEEGGGGTT-TTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTT---CEEEEECCC
T ss_pred CHHHHHHHHHHHHHHhCCccEecccccccc-ccchhhhhccccccccccccccccccccccccccccc---cceeecccc
Confidence 999999999999999999999999999987 6899999999999999999999999999999998754 566666655
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhccc
Q 010380 334 GSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPR 413 (512)
Q Consensus 334 ~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~r 413 (512)
+..+.|++..|+++|+|+++|+++|++|++++|||||+|+||+|+|+|.....+... .+...+.+++|
T Consensus 138 --a~~~~~~~~~Y~~sK~al~~lt~~lA~el~~~gIrvN~I~PG~v~T~~~~~~~~~~~----------~~~~~~~p~~r 205 (241)
T d2a4ka1 138 --AGLGAFGLAHYAAGKLGVVGLARTLALELARKGVRVNVLLPGLIQTPMTAGLPPWAW----------EQEVGASPLGR 205 (241)
T ss_dssp --TTCCHHHHHHHHHCSSHHHHHHHHHHHHHTTTTCEEEEEEECSBCCGGGTTSCHHHH----------HHHHHTSTTCS
T ss_pred --ccccccCccccchhhHHHHHHHHHHHHHHhHhCCEEeeeccCcCCCHHHHhhhHhHH----------HHHHhCCCCCC
Confidence 344557889999999999999999999999999999999999999998754322111 23345678999
Q ss_pred cccchhhhhhhhhcCChHHHHHHHHHHhccCccc
Q 010380 414 IRVVKGSGKAINYLTPPRILLALVTAWLRRGRWF 447 (512)
Q Consensus 414 ~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~ 447 (512)
+..|+|+++++.||+++...+.++..+..||+|.
T Consensus 206 ~~~p~dva~~v~fL~S~~s~~itG~~i~vDGG~s 239 (241)
T d2a4ka1 206 AGRPEEVAQAALFLLSEESAYITGQALYVDGGRS 239 (241)
T ss_dssp CBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTTT
T ss_pred CcCHHHHHHHHHHHhcchhCCCcCceEEeCCCcc
Confidence 9999999999999999999888888888888873
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.2e-43 Score=345.87 Aligned_cols=243 Identities=25% Similarity=0.272 Sum_probs=204.8
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCC
Q 010380 175 AGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCE 254 (512)
Q Consensus 175 l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd 254 (512)
.+||++|||||++|||+++|+.|+++|++|++++|+.++++++.+++.+.. .+.++.++.||++|
T Consensus 1 i~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~---------------~~~~~~~~~~Dv~~ 65 (254)
T d2gdza1 1 VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQF---------------EPQKTLFIQCDVAD 65 (254)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTS---------------CGGGEEEEECCTTS
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhc---------------CCCcEEEEEeecCC
Confidence 369999999999999999999999999999999999999998888875532 24679999999999
Q ss_pred hhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCC--CCCeEEeecC
Q 010380 255 PADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQP--KGGHIFNMDG 332 (512)
Q Consensus 255 ~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~--~~g~IV~vSS 332 (512)
+++++++++++.+++|+||+||||||+.. .++|++++++|+.++++++++++|+|.++. .+|+||++||
T Consensus 66 ~~~v~~~~~~~~~~~G~iDilVnnAg~~~---------~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS 136 (254)
T d2gdza1 66 QQQLRDTFRKVVDHFGRLDILVNNAGVNN---------EKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSS 136 (254)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCCC---------SSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECC
T ss_pred HHHHHHHHHHHHHHcCCcCeecccccccc---------cccchheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeecc
Confidence 99999999999999999999999999864 245899999999999999999999998753 3589999999
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHH--HHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHh
Q 010380 333 AGSGGSSTPLTAVYGSTKCGLRQLQAS--LFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTL 410 (512)
Q Consensus 333 ~~a~~~~~p~~~~Y~aSKaAl~~l~~s--La~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~ 410 (512)
. ++..+.|+.++|++||+|+.+|+++ |+.|++++|||||+|+||+|+|||+......... ..............+
T Consensus 137 ~-~~~~~~~~~~~Y~asKaal~~ltrs~ala~e~~~~gIrVN~I~PG~i~T~~~~~~~~~~~~--~~~~~~~~~~~~~~p 213 (254)
T d2gdza1 137 L-AGLMPVAQQPVYCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAILESIEKEENM--GQYIEYKDHIKDMIK 213 (254)
T ss_dssp G-GGTSCCTTCHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESCBSSHHHHGGGCHHHH--GGGGGGHHHHHHHHH
T ss_pred H-hhccCCCCccchHHHHHHHHHHHHHHHHHHHhcCCCEEEEEEEcCCCCChhhhhccccccc--cccHHHHHHHHhcCC
Confidence 8 7888999999999999999999997 7889999999999999999999997553322111 111111122234567
Q ss_pred ccccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 411 VPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 411 l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
++|+..|+|+++++.||+++.. .++..+..||++
T Consensus 214 ~~r~~~pedvA~~v~fL~s~~~--itG~~i~VdGG~ 247 (254)
T d2gdza1 214 YYGILDPPLIANGLITLIEDDA--LNGAIMKITTSK 247 (254)
T ss_dssp HHCCBCHHHHHHHHHHHHHCTT--CSSCEEEEETTT
T ss_pred CCCCcCHHHHHHHHHHHHcCCC--CCCCEEEECCCC
Confidence 8899999999999999998764 677777777665
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=9.7e-43 Score=340.63 Aligned_cols=217 Identities=24% Similarity=0.315 Sum_probs=194.4
Q ss_pred cCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEcc
Q 010380 172 HCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACD 251 (512)
Q Consensus 172 ~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~D 251 (512)
+.+++||++|||||++|||+++|++|+++|++|++++|++++++++.+++.+ .+.++.++.||
T Consensus 2 ~~~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~-----------------~~~~~~~~~~D 64 (244)
T d1yb1a_ 2 RKSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKG-----------------LGAKVHTFVVD 64 (244)
T ss_dssp CCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-----------------TTCCEEEEECC
T ss_pred CCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh-----------------cCCcEEEEEee
Confidence 4579999999999999999999999999999999999999999999999876 46789999999
Q ss_pred CCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeec
Q 010380 252 VCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD 331 (512)
Q Consensus 252 ltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vS 331 (512)
++|+++++++++++.+++|++|+||||||... ..++.+.+.++|++++++|+.|+++++++++|.|+++ +.|+||++|
T Consensus 65 vs~~~~v~~~~~~i~~~~g~idilinnag~~~-~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~-~~G~Iv~is 142 (244)
T d1yb1a_ 65 CSNREDIYSSAKKVKAEIGDVSILVNNAGVVY-TSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKN-NHGHIVTVA 142 (244)
T ss_dssp TTCHHHHHHHHHHHHHHTCCCSEEEECCCCCC-CCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHcCCCceeEeeccccc-cccccccchhHHHhhcceeeeccHHHHHHHhhhHHhc-CCceEEEee
Confidence 99999999999999999999999999999988 6888999999999999999999999999999999988 689999999
Q ss_pred CCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCC---CCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHH
Q 010380 332 GAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKR---SKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVAR 408 (512)
Q Consensus 332 S~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~---~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~ 408 (512)
|. ++..+.|++++|++||+|+.+|+++|+.|+++ +||+||+|+||+|+|+|...... .. ....+||++|+
T Consensus 143 S~-~~~~~~~~~~~Y~asKaal~~~~~~La~El~~~~~~gI~V~~i~PG~v~T~~~~~~~~----~~--~~~~~pe~va~ 215 (244)
T d1yb1a_ 143 SA-AGHVSVPFLLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTGFIKNPST----SL--GPTLEPEEVVN 215 (244)
T ss_dssp CC-C-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEEETHHHHCSTTCTHH----HH--CCCCCHHHHHH
T ss_pred cc-hhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEcCCCCChhhhCcCc----cc--cCCCCHHHHHH
Confidence 98 68888999999999999999999999999865 68999999999999999764321 11 12236899988
Q ss_pred Hhcccc
Q 010380 409 TLVPRI 414 (512)
Q Consensus 409 ~~l~r~ 414 (512)
.++..+
T Consensus 216 ~i~~~~ 221 (244)
T d1yb1a_ 216 RLMHGI 221 (244)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776543
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.2e-42 Score=340.56 Aligned_cols=237 Identities=22% Similarity=0.339 Sum_probs=204.0
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCC
Q 010380 175 AGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCE 254 (512)
Q Consensus 175 l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd 254 (512)
++||++|||||++|||+++|+.|+++|++|++++|++++++++.+++++.. ...++.+++||++|
T Consensus 8 lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~---------------~~~~~~~~~~Dls~ 72 (257)
T d1xg5a_ 8 WRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAG---------------YPGTLIPYRCDLSN 72 (257)
T ss_dssp GTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT---------------CSSEEEEEECCTTC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC---------------CCceEEEEEccCCC
Confidence 899999999999999999999999999999999999999999999987732 23589999999999
Q ss_pred hhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCC-CCCeEEeecCC
Q 010380 255 PADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQP-KGGHIFNMDGA 333 (512)
Q Consensus 255 ~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~-~~g~IV~vSS~ 333 (512)
+++++++++++.+++|+||+||||||... ..++.+++.++|++.+++|+.++++++++++|.|+++. ++|+||++||.
T Consensus 73 ~~~v~~~v~~~~~~~g~iD~lVnnAg~~~-~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~~~~~~~~~g~Ii~isS~ 151 (257)
T d1xg5a_ 73 EEDILSMFSAIRSQHSGVDICINNAGLAR-PDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSM 151 (257)
T ss_dssp HHHHHHHHHHHHHHHCCCSEEEECCCCCC-CCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCG
T ss_pred HHHHHHHHHHHHHhcCCCCEEEecccccC-CCccccccHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCCceEEEech
Confidence 99999999999999999999999999987 68999999999999999999999999999999998764 47899999997
Q ss_pred CCCC--CCCCCcchhhHHHHHHHHHHHHHHHHh--CCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHH
Q 010380 334 GSGG--SSTPLTAVYGSTKCGLRQLQASLFKES--KRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVART 409 (512)
Q Consensus 334 ~a~~--~~~p~~~~Y~aSKaAl~~l~~sLa~El--~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~ 409 (512)
++. .+.+....|++||+|+.+|+++|+.|+ +++||+||+|+||+++|++........ ..+..+..
T Consensus 152 -~~~~~~p~~~~~~Y~~sKaal~~ltr~la~el~~~~~~I~vn~i~PG~i~t~~~~~~~~~~----------~~~~~~~~ 220 (257)
T d1xg5a_ 152 -SGHRVLPLSVTHFYSATKYAVTALTEGLRQELREAQTHIRATCISPGVVETQFAFKLHDKD----------PEKAAATY 220 (257)
T ss_dssp -GGTSCCSCGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCBCSSHHHHHTTTC----------HHHHHHHH
T ss_pred -HhcCCCCCcccHHHHHHHHHHHhCHHHHHHHHHhCCCCEEEEEEeCCCCCChhhhhcChhh----------HHHHHhcC
Confidence 444 345566789999999999999999998 789999999999999999864321110 12335567
Q ss_pred hccccccchhhhhhhhhcCChHHHHHHHH
Q 010380 410 LVPRIRVVKGSGKAINYLTPPRILLALVT 438 (512)
Q Consensus 410 ~l~r~~~~~~va~~v~~L~s~~~~~~~~~ 438 (512)
+++++..|+|+++++.||+++...+.++.
T Consensus 221 ~~~r~~~pedvA~~v~fL~s~~a~~itG~ 249 (257)
T d1xg5a_ 221 EQMKCLKPEDVAEAVIYVLSTPAHIQIGD 249 (257)
T ss_dssp C---CBCHHHHHHHHHHHHHSCTTEEEEE
T ss_pred CCCCCcCHHHHHHHHHHHhCChhcCeECC
Confidence 78999999999999999998876554443
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=1.2e-42 Score=341.58 Aligned_cols=245 Identities=16% Similarity=0.144 Sum_probs=203.8
Q ss_pred CCCCCCEEEEECCCC--hHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEc
Q 010380 173 CKAGPRNVVITGSTR--GLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIAC 250 (512)
Q Consensus 173 ~~l~gk~vLVTGass--GIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~ 250 (512)
++|+||++|||||+| |||+++|++|+++|++|++++|+++..+++ +++.+ .+.+..++++
T Consensus 4 ~~L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~-~~~~~-----------------~~~~~~~~~~ 65 (256)
T d1ulua_ 4 VDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEA-EKLAE-----------------ALGGALLFRA 65 (256)
T ss_dssp ECCTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHHH-HHHHH-----------------HTTCCEEEEC
T ss_pred cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHH-HHhhh-----------------ccCccccccc
Confidence 578999999999986 999999999999999999999987655443 33332 2345678999
Q ss_pred cCCChhhHHHHHHHHHHHcCCCcccccccccCCC---CCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeE
Q 010380 251 DVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKG---FKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHI 327 (512)
Q Consensus 251 Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~---~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~I 327 (512)
|++|+++++++++++.+++|+||+||||||+... ..++.+.+.++|++.+++|+.+++.++|+++|+|++ +|+|
T Consensus 66 D~~~~~~v~~~~~~~~~~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~---~G~I 142 (256)
T d1ulua_ 66 DVTQDEELDALFAGVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLRE---GGGI 142 (256)
T ss_dssp CTTCHHHHHHHHHHHHHHHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEE---EEEE
T ss_pred ccCCHHHHHHHHHHHHHhcCCceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhcc---CCEE
Confidence 9999999999999999999999999999998541 245678899999999999999999999999999975 4899
Q ss_pred EeecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHH
Q 010380 328 FNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVA 407 (512)
Q Consensus 328 V~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA 407 (512)
|++||. .+..+.|+..+|++||+|+++|+++|+.|++++|||||+|+||+|+|++........ +. ..+...
T Consensus 143 v~isS~-~~~~~~~~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~I~PG~i~t~~~~~~~~~~--~~------~~~~~~ 213 (256)
T d1ulua_ 143 VTLTYY-ASEKVVPKYNVMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAARSIPGFT--KM------YDRVAQ 213 (256)
T ss_dssp EEEECG-GGTSBCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC----------CH--HH------HHHHHH
T ss_pred EEEeeh-HhcCCCCCchHHHHHHHHHHHHHHHHHHHhcccCCEEeeeccceeeeccccchhhhH--HH------HHHHHh
Confidence 999998 677889999999999999999999999999999999999999999999865432111 11 123345
Q ss_pred HHhccccccchhhhhhhhhcCChHHHHHHHHHHhccCccc
Q 010380 408 RTLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWF 447 (512)
Q Consensus 408 ~~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~ 447 (512)
..+++|+..|+|+++++.||++++..+.++..+..||+|.
T Consensus 214 ~~pl~R~~~pedvA~~v~fL~S~~s~~itG~~i~VDGG~~ 253 (256)
T d1ulua_ 214 TAPLRRNITQEEVGNLGLFLLSPLASGITGEVVYVDAGYH 253 (256)
T ss_dssp HSTTSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred cCCCCCCcCHHHHHHHHHHHhCchhCCccCCeEEECcCEe
Confidence 6789999999999999999999999888999998888874
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=100.00 E-value=1.6e-42 Score=343.94 Aligned_cols=251 Identities=20% Similarity=0.267 Sum_probs=213.8
Q ss_pred cCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcC-hhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEc
Q 010380 172 HCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRS-SESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIAC 250 (512)
Q Consensus 172 ~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~-~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~ 250 (512)
..+|+||++|||||++|||+++|++|+++|++|++++|+ ++.++++.+++.+ .+.++.++.|
T Consensus 13 ~~sL~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~-----------------~g~~~~~~~~ 75 (272)
T d1g0oa_ 13 SASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKK-----------------NGSDAACVKA 75 (272)
T ss_dssp GGCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH-----------------TTCCEEEEEC
T ss_pred CcCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHh-----------------hCCceeeEeC
Confidence 457999999999999999999999999999999999887 5566777777765 4678999999
Q ss_pred cCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEee
Q 010380 251 DVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNM 330 (512)
Q Consensus 251 Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~v 330 (512)
|++|+++++++++++.+++|+||++|||||... ..++.+.+.++|++++++|+.++++++|+++|+|.++ |+++++
T Consensus 76 D~~~~~~v~~~~~~~~~~~g~idilV~nag~~~-~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~---g~~i~i 151 (272)
T d1g0oa_ 76 NVGVVEDIVRMFEEAVKIFGKLDIVCSNSGVVS-FGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIG---GRLILM 151 (272)
T ss_dssp CTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCC-CCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTT---CEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCccccccccch-hhhhhhhhhhHHHHHhhhccceeeeeccccccccccc---cccccc
Confidence 999999999999999999999999999999887 7889999999999999999999999999999999764 688888
Q ss_pred cCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHH------
Q 010380 331 DGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPE------ 404 (512)
Q Consensus 331 SS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe------ 404 (512)
+|..+...+.+..+.|++||+|+++|+++|+.|++++|||||+|+||+|+|+|............. ...++
T Consensus 152 ~s~~~~~~~~~~~~~Y~asKaal~~ltk~lA~e~~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~---~~~~~~~~~~~ 228 (272)
T d1g0oa_ 152 GSITGQAKAVPKHAVYSGSKGAIETFARCMAIDMADKKITVNVVAPGGIKTDMYHAVCREYIPNGE---NLSNEEVDEYA 228 (272)
T ss_dssp CCGGGTCSSCSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGGSTTCT---TCCHHHHHHHH
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHHHHHhchhCeEEEEEccCCcCChHHHHHHHhhhhccc---ccchHHHHHHH
Confidence 777455667788899999999999999999999999999999999999999986432211111000 00111
Q ss_pred HHHHHhccccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 405 TVARTLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 405 ~vA~~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
.....+++|+..|+|+++++.||+++...+.++..+..||++
T Consensus 229 ~~~~~PlgR~~~peevA~~v~fL~s~~s~~itG~~i~vDGG~ 270 (272)
T d1g0oa_ 229 AVQWSPLRRVGLPIDIARVVCFLASNDGGWVTGKVIGIDGGA 270 (272)
T ss_dssp HHHSCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTC
T ss_pred HHccCCCCCCcCHHHHHHHHHHHhCchhcCccCceEeECCCC
Confidence 234467899999999999999999999888888888877765
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.8e-42 Score=336.53 Aligned_cols=229 Identities=17% Similarity=0.233 Sum_probs=197.9
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCC
Q 010380 175 AGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCE 254 (512)
Q Consensus 175 l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd 254 (512)
|+||++|||||++|||+++|++|+++|++|++++|+++.+++ . ...++.||+++
T Consensus 2 LkgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l~~------------------------~--~~~~~~~Dv~~ 55 (234)
T d1o5ia_ 2 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKR------------------------S--GHRYVVCDLRK 55 (234)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHH------------------------T--CSEEEECCTTT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHh------------------------c--CCcEEEcchHH
Confidence 689999999999999999999999999999999999765432 1 22357899986
Q ss_pred hhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCC
Q 010380 255 PADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAG 334 (512)
Q Consensus 255 ~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~ 334 (512)
. ++.+.+++++||+||||||+.. ..++.+++.++|++++++|+.++++++|+++|.|+++ +.|+||+++|.
T Consensus 56 ~------~~~~~~~~g~iD~lVnnAG~~~-~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~-~~G~ii~i~S~- 126 (234)
T d1o5ia_ 56 D------LDLLFEKVKEVDILVLNAGGPK-AGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEK-GWGRIVAITSF- 126 (234)
T ss_dssp C------HHHHHHHSCCCSEEEECCCCCC-CBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCG-
T ss_pred H------HHHHHHHhCCCcEEEecccccC-CcchhhhhhHHHHHHhhhhhhhhhhhhhccccccccc-ccccccccccc-
Confidence 4 3456678899999999999876 6889999999999999999999999999999999987 67899999988
Q ss_pred CCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhcccc
Q 010380 335 SGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPRI 414 (512)
Q Consensus 335 a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~r~ 414 (512)
....+.+....|++||+|+.+|+++|+.|++++|||||+|+||+|+|++.......... .+...+.+++|+
T Consensus 127 ~~~~~~~~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~v~T~~~~~~~~~~~~---------~~~~~~~pl~R~ 197 (234)
T d1o5ia_ 127 SVISPIENLYTSNSARMALTGFLKTLSFEVAPYGITVNCVAPGWTETERVKELLSEEKK---------KQVESQIPMRRM 197 (234)
T ss_dssp GGTSCCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTHHHHSCHHHH---------HHHHTTSTTSSC
T ss_pred cccccccccccchhHHHHHHHHHHHHHHHhcccCeEEeecccCccchhhhhhhcCHHHH---------HHHHhcCCCCCC
Confidence 67788899999999999999999999999999999999999999999986432211110 122345788999
Q ss_pred ccchhhhhhhhhcCChHHHHHHHHHHhccCccc
Q 010380 415 RVVKGSGKAINYLTPPRILLALVTAWLRRGRWF 447 (512)
Q Consensus 415 ~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~ 447 (512)
..|+|++.++.||+++...+.++..+..||+|.
T Consensus 198 ~~pediA~~v~fL~S~~s~~itG~~i~vDGG~s 230 (234)
T d1o5ia_ 198 AKPEEIASVVAFLCSEKASYLTGQTIVVDGGLS 230 (234)
T ss_dssp BCHHHHHHHHHHHHSGGGTTCCSCEEEESTTCC
T ss_pred cCHHHHHHHHHHHhChhhcCCcCcEEEECcccc
Confidence 999999999999999999999999999998874
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=3.7e-42 Score=346.58 Aligned_cols=233 Identities=24% Similarity=0.278 Sum_probs=202.6
Q ss_pred cCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcC---------hhhHHHHHHHHHHHHhhhhhhcCCCCcccccC
Q 010380 172 HCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRS---------SESVRMTVTELEENLKEGMMAAGGSSKKNLVH 242 (512)
Q Consensus 172 ~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~---------~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g 242 (512)
.|+++||++|||||++|||+++|++|+++|++|++++|+ .+.++++.+++..
T Consensus 2 Pm~l~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~------------------- 62 (302)
T d1gz6a_ 2 PLRFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRR------------------- 62 (302)
T ss_dssp CCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHH-------------------
T ss_pred CcCcCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchhhhhhhhHHHHHHHHHHHhh-------------------
Confidence 478999999999999999999999999999999999765 4445555555543
Q ss_pred ceEEEEEccCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCC
Q 010380 243 AKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQP 322 (512)
Q Consensus 243 ~~v~~v~~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~ 322 (512)
+.....+|++|.++++++++++.+++|+||+||||||+.. ..++.+++.++|++++++|+.|+++++|+++|+|+++
T Consensus 63 -~~~~~~~d~~~~~~~~~~v~~~~~~~G~iDiLVnNAGi~~-~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~- 139 (302)
T d1gz6a_ 63 -RGGKAVANYDSVEAGEKLVKTALDTFGRIDVVVNNAGILR-DRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQ- 139 (302)
T ss_dssp -TTCEEEEECCCGGGHHHHHHHHHHHTSCCCEEEECCCCCC-CCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred -cccccccccchHHHHHHHHHHHHHHcCCCCEEEECCccCC-CCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhC-
Confidence 2334678999999999999999999999999999999987 6899999999999999999999999999999999987
Q ss_pred CCCeEEeecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCC
Q 010380 323 KGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICEL 402 (512)
Q Consensus 323 ~~g~IV~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~ 402 (512)
+.|+||++||. ++..+.++..+|++||+|+.+|+++|+.|++++||+||+|+||++.|++....
T Consensus 140 ~~G~IV~isS~-~~~~~~~~~~~Y~asKaal~~lt~~la~E~~~~gIrVN~I~PG~~~t~~~~~~--------------- 203 (302)
T d1gz6a_ 140 NYGRIIMTASA-SGIYGNFGQANYSAAKLGLLGLANTLVIEGRKNNIHCNTIAPNAGSRMTETVM--------------- 203 (302)
T ss_dssp TCEEEEEECCH-HHHHCCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEEECCSTTTGGGS---------------
T ss_pred CCcEEEEeCCh-hhcCCCCCcHHHHHHHHHHHHHHHHHHHHHhccCCceeeeCCCCCCcchhhcC---------------
Confidence 57999999998 67788899999999999999999999999999999999999999988764221
Q ss_pred HHHHHHHhccccccchhhhhhhhhcCChHHHHHHHHHHhccCcccc
Q 010380 403 PETVARTLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWFD 448 (512)
Q Consensus 403 pe~vA~~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~~ 448 (512)
++.. .+...|+|++.++.||+++.. ..++..+..||+|..
T Consensus 204 ~~~~-----~~~~~PedvA~~v~fL~S~~a-~itG~~i~vdGG~~~ 243 (302)
T d1gz6a_ 204 PEDL-----VEALKPEYVAPLVLWLCHESC-EENGGLFEVGAGWIG 243 (302)
T ss_dssp CHHH-----HHHSCGGGTHHHHHHHTSTTC-CCCSCEEEEETTEEE
T ss_pred cHhh-----HhcCCHHHHHHHHHHHcCCCc-CCCCcEEEeCCCcee
Confidence 2222 234578999999999999876 568999999998854
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=100.00 E-value=6.9e-41 Score=335.15 Aligned_cols=249 Identities=21% Similarity=0.240 Sum_probs=215.6
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
.+++||++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+. .+.++.++.||+
T Consensus 21 ~~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~----------------~g~~~~~~~~D~ 84 (294)
T d1w6ua_ 21 NSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQ----------------TGNKVHAIQCDV 84 (294)
T ss_dssp TTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH----------------HSSCEEEEECCT
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHh----------------cCCceEEEEecc
Confidence 4899999999999999999999999999999999999999999998888764 356788999999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|+++++++++.+.+++++||+||||||... ..++.+.+.+++++.+.+|+.+.+.+.+...+.+......+.+++++|
T Consensus 85 ~~~~~v~~~~~~~~~~~g~iDilvnnAg~~~-~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~i~~~ss 163 (294)
T d1w6ua_ 85 RDPDMVQNTVSELIKVAGHPNIVINNAAGNF-ISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITT 163 (294)
T ss_dssp TCHHHHHHHHHHHHHHTCSCSEEEECCCCCC-CSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred cChHHHHHHhhhhhhhccccchhhhhhhhcc-ccccccchhhhhhhheeeecccchhhhhhhhccccccccccccccccc
Confidence 9999999999999999999999999999887 688999999999999999999999999998888887767778888877
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhcc
Q 010380 333 AGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVP 412 (512)
Q Consensus 333 ~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~ 412 (512)
. .+..+.++..+|++||+|+++|++.||.|++++|||||+|+||+|+|++........... ..+..+..+++
T Consensus 164 ~-~~~~~~~~~~~YsasKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~-------~~~~~~~~pl~ 235 (294)
T d1w6ua_ 164 I-YAETGSGFVVPSASAKAGVEAMSKSLAAEWGKYGMRFNVIQPGPIKTKGAFSRLDPTGTF-------EKEMIGRIPCG 235 (294)
T ss_dssp T-HHHHCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC------CCTTSHH-------HHHHHTTCTTS
T ss_pred c-hhhhcccccchHHHHHHHHHHHHHHHHHHHhHhCeEEEEEccCccccchhhhccCCcHHH-------HHHHhhcCCCC
Confidence 6 567778899999999999999999999999999999999999999999975533221111 12334557899
Q ss_pred ccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 413 RIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 413 r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
|+..|+|+++++.||+++...+.++..+..||++
T Consensus 236 R~~~pediA~~v~fL~sd~s~~itG~~i~vDGG~ 269 (294)
T d1w6ua_ 236 RLGTVEELANLAAFLCSDYASWINGAVIKFDGGE 269 (294)
T ss_dssp SCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTH
T ss_pred CCCCHHHHHHHHHHHhCchhcCCCCcEEEECCCh
Confidence 9999999999999999999888888888888775
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2e-41 Score=331.33 Aligned_cols=241 Identities=18% Similarity=0.245 Sum_probs=201.8
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
+++||++|||||++|||+++|+.|+++|++|++++|++++++++.+ ...+....+|+.
T Consensus 3 ~l~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~~l~~~~~----------------------~~~~~~~~~d~~ 60 (245)
T d2ag5a1 3 RLDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEK----------------------YPGIQTRVLDVT 60 (245)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGGG----------------------STTEEEEECCTT
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh----------------------ccCCceeeeecc
Confidence 3899999999999999999999999999999999999877654321 134667888988
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
+.+.++. ..+.++++|+||||||... ..++.+.+.++|++.+++|+.++++++|+++|+|.++ +.|+||+++|.
T Consensus 61 ~~~~~~~----~~~~~~~id~lVn~ag~~~-~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~-~~g~Ii~isS~ 134 (245)
T d2ag5a1 61 KKKQIDQ----FANEVERLDVLFNVAGFVH-HGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQ-KSGNIINMSSV 134 (245)
T ss_dssp CHHHHHH----HHHHCSCCSEEEECCCCCC-CBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCS
T ss_pred ccccccc----cccccccceeEEecccccC-CCChhhCCHHHHHHHHHHhhccchhHHHhhCcccccC-CCceeeeeech
Confidence 7665554 4556789999999999987 6889999999999999999999999999999999987 67999999987
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhccc
Q 010380 334 GSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPR 413 (512)
Q Consensus 334 ~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~r 413 (512)
.+...+.++..+|+++|+|+++|+++|+.|++++|||||+|+||+|+||+........... .....+..++.+++|
T Consensus 135 ~~~~~~~~~~~~Y~~sKaal~~l~r~lA~e~~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~----~~~~~~~~~~~pl~R 210 (245)
T d2ag5a1 135 ASSVKGVVNRCVYSTTKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSLQERIQARGNP----EEARNDFLKRQKTGR 210 (245)
T ss_dssp BTTTBCCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCEECHHHHHHHHHSSSH----HHHHHHHHHTCTTSS
T ss_pred hhccCCccchhHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeceeechhhHhhhhhhhhh----HHHHHHHHhcCCCCC
Confidence 4445678899999999999999999999999999999999999999999874321110000 000123345678899
Q ss_pred cccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 414 IRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 414 ~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
+..|+|+++.+.||++|+..+.++..+..||+|
T Consensus 211 ~~~pedva~~v~fL~s~~s~~iTG~~i~VDGG~ 243 (245)
T d2ag5a1 211 FATAEEIAMLCVYLASDESAYVTGNPVIIDGGW 243 (245)
T ss_dssp CEEHHHHHHHHHHHHSGGGTTCCSCEEEECTTG
T ss_pred CcCHHHHHHHHHHHhChhhCCCcCceEEeCCCc
Confidence 999999999999999999988899888888887
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.3e-39 Score=320.60 Aligned_cols=230 Identities=23% Similarity=0.182 Sum_probs=196.5
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHH---CCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEc
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLL---SGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIAC 250 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~---~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~ 250 (512)
.|+||++|||||++|||+++|++|++ +|++|++++|++++++++.++|.... .+.++.+++|
T Consensus 3 ~L~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l~~~~---------------~~~~~~~~~~ 67 (259)
T d1oaaa_ 3 GLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQ---------------PDLKVVLAAA 67 (259)
T ss_dssp CCBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHC---------------TTSEEEEEEC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHHHhhc---------------CCceEEEEEc
Confidence 57899999999999999999999996 79999999999999999999987642 2468999999
Q ss_pred cCCChhhHHHHHHHHHHH----cCCCcccccccccCC--CCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCC-C
Q 010380 251 DVCEPADVQKLSNFAVNE----FGSIDIWINNAGTNK--GFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQP-K 323 (512)
Q Consensus 251 Dltd~~sv~~~~~~i~~~----~g~IDvLInnAG~~~--~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~-~ 323 (512)
|++|+++++++++.+.+. ++.+|+||||||... +.+++.+.+.++|+++|++|+.++++++|+++|+|++++ .
T Consensus 68 Dvs~~~~v~~l~~~~~~~~~~~~~~~~~lvnnag~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~~~~ 147 (259)
T d1oaaa_ 68 DLGTEAGVQRLLSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGL 147 (259)
T ss_dssp CTTSHHHHHHHHHHHHHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTC
T ss_pred cCCCHHHHHHHHHHHHHhhhhccCceEEEEecccccccCCCCccccCCHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC
Confidence 999999999999988763 467899999999854 245688999999999999999999999999999998863 2
Q ss_pred CCeEEeecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCH
Q 010380 324 GGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELP 403 (512)
Q Consensus 324 ~g~IV~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~p 403 (512)
.|+||++||. ++..+.|++++|++||+|+++|+++|+.| ++|||||+|+||+|+|+|....... ...|
T Consensus 148 ~g~Iv~isS~-~~~~~~~~~~~Y~asKaal~~lt~~la~e--~~gIrVn~v~PG~i~T~~~~~~~~~---------~~~~ 215 (259)
T d1oaaa_ 148 SKTVVNISSL-CALQPYKGWGLYCAGKAARDMLYQVLAAE--EPSVRVLSYAPGPLDNDMQQLARET---------SKDP 215 (259)
T ss_dssp EEEEEEECCG-GGTSCCTTCHHHHHHHHHHHHHHHHHHHH--CTTEEEEEEECCSBSSHHHHHHHHH---------CSCH
T ss_pred cccccccccc-cccCCCccchHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEcCCCCCHHHHHhhhc---------CCCH
Confidence 5799999998 78889999999999999999999999999 5699999999999999986432110 0122
Q ss_pred HH----HHHHhccccccchhhhhhhhhcCCh
Q 010380 404 ET----VARTLVPRIRVVKGSGKAINYLTPP 430 (512)
Q Consensus 404 e~----vA~~~l~r~~~~~~va~~v~~L~s~ 430 (512)
+. ....+.+++..|+++++.+.||+++
T Consensus 216 ~~~~~~~~~~~~~r~~~p~evA~~i~~ll~~ 246 (259)
T d1oaaa_ 216 ELRSKLQKLKSDGALVDCGTSAQKLLGLLQK 246 (259)
T ss_dssp HHHHHHHHHHHTTCSBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCCCHHHHHHHHHHHhhh
Confidence 22 2334678899999999999998864
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=100.00 E-value=5.9e-40 Score=322.58 Aligned_cols=236 Identities=20% Similarity=0.241 Sum_probs=187.7
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
|+++||+||||||++|||+++|++|+++|++|++++|+.++.+++ +++.... .+.++.++.+|+
T Consensus 1 m~l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~~~-~~~~~~~---------------~~~~~~~~~~d~ 64 (254)
T d1sbya1 1 MDLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTAL-AELKAIN---------------PKVNITFHTYDV 64 (254)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHH-HHHHHHC---------------TTSEEEEEECCT
T ss_pred CCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHHHH-HHHHhhC---------------CCCCEEEEEeec
Confidence 579999999999999999999999999999999999987776544 3333321 346899999999
Q ss_pred C-ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCC--CCCeEEe
Q 010380 253 C-EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQP--KGGHIFN 329 (512)
Q Consensus 253 t-d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~--~~g~IV~ 329 (512)
+ +.++++++++++.+++|+||+||||||.. +.++|++++++|+.|+++++++++|+|.++. .+|+||+
T Consensus 65 ~~~~~~~~~~~~~~~~~~g~iDilvnnAG~~---------~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~ 135 (254)
T d1sbya1 65 TVPVAESKKLLKKIFDQLKTVDILINGAGIL---------DDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIAN 135 (254)
T ss_dssp TSCHHHHHHHHHHHHHHHSCCCEEEECCCCC---------CTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEE
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEeCCCCC---------CHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEE
Confidence 8 67789999999999999999999999964 3477999999999999999999999997652 4689999
Q ss_pred ecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHH
Q 010380 330 MDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVART 409 (512)
Q Consensus 330 vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~ 409 (512)
+||. ++..+.+++.+|++||+|+.+|+++|+.|++++|||||+|+||+|+|||......... ..+..++.
T Consensus 136 isS~-~~~~~~~~~~~Y~asKaal~~~t~~la~el~~~gIrVn~I~PG~v~T~~~~~~~~~~~---------~~~~~~~~ 205 (254)
T d1sbya1 136 ICSV-TGFNAIHQVPVYSASKAAVVSFTNSLAKLAPITGVTAYSINPGITRTPLVHTFNSWLD---------VEPRVAEL 205 (254)
T ss_dssp ECCG-GGTSCCTTSHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEEEECSEESHHHHSCCCGGG---------SCTTHHHH
T ss_pred Eech-hhccCCCCCHHHHHHHHHHHHHHHHHHhhccccCeEEEEEEeCCCcCccccccccchh---------HHHHHHhc
Confidence 9998 6788999999999999999999999999999999999999999999998754322111 11122233
Q ss_pred hc-cccccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 410 LV-PRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 410 ~l-~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
+. .+...|+++++.+.++.... .++..+..||++
T Consensus 206 ~~~~~~~~~e~va~~~~~~~~~~---~tG~vi~vdgG~ 240 (254)
T d1sbya1 206 LLSHPTQTSEQCGQNFVKAIEAN---KNGAIWKLDLGT 240 (254)
T ss_dssp HTTSCCEEHHHHHHHHHHHHHHC---CTTCEEEEETTE
T ss_pred cccCCCCCHHHHHHHHHHhhhCC---CCCCEEEECCCE
Confidence 32 33556777776665544322 245555555554
|
| >d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.4e-39 Score=322.27 Aligned_cols=233 Identities=16% Similarity=0.176 Sum_probs=181.8
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEE---EEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSGDRVV---VASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~Ga~Vv---l~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
.|+||||||++|||+++|+.|+++|++|+ ++.|+.+..+++.+..++. . ..+.++.++.||++
T Consensus 2 kkVvlITGassGIG~a~A~~la~~Ga~v~~v~~~~~~~~~~~~l~~~~~~~-~-------------~~~~~~~~~~~Dv~ 67 (285)
T d1jtva_ 2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARAL-A-------------CPPGSLETLQLDVR 67 (285)
T ss_dssp CEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHT-T-------------CCTTSEEEEECCTT
T ss_pred CCEEEEccCCCHHHHHHHHHHHHCCCCeEEEEEecCChhhhHHHHHHHHHH-h-------------ccCCceEEEecccc
Confidence 57899999999999999999999998754 4466655544444333321 1 14578999999999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
|+++++++++++.+ |.+|+||||||... ..++.+.+.|+|++++++|+.|+++++++++|+|+++ +.|+||++||.
T Consensus 68 ~~~~~~~~~~~~~~--g~idilvnnag~~~-~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~m~~~-~~G~Iv~isS~ 143 (285)
T d1jtva_ 68 DSKSVAAARERVTE--GRVDVLVCNAGLGL-LGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRR-GSGRVLVTGSV 143 (285)
T ss_dssp CHHHHHHHHHTCTT--SCCSEEEECCCCCC-CSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEEEEG
T ss_pred chHhhhhhhhhccc--cchhhhhhcccccc-cccccchhHhhhhhhhhcchhHHHHHHHHHHHHHHHc-CCCceEEEech
Confidence 99999999988743 89999999999987 6889999999999999999999999999999999987 67999999998
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhh-------hhcCCHHHH
Q 010380 334 GSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFN-------IICELPETV 406 (512)
Q Consensus 334 ~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~-------~~~~~pe~v 406 (512)
++..+.|+.+.|++||+|+.+|+++|+.|++++||+||+|+||+|+|+|.........+.... .........
T Consensus 144 -~g~~~~~~~~~Y~asKaal~~l~~~la~El~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (285)
T d1jtva_ 144 -GGLMGLPFNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTAFMEKVLGSPEEVLDRTDIHTFHRFYQYLAHS 222 (285)
T ss_dssp -GGTSCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC-------CCHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred -hhcCCCCCchHHHHHHHHHHHHHHHHHHHhhccCcEEEEEecCCCCChHHHHhccCHHHHhhccchhHHHHHHHHHHHH
Confidence 788999999999999999999999999999999999999999999999986543221111000 000011122
Q ss_pred HHHhccccccchhhhhhhhhcC
Q 010380 407 ARTLVPRIRVVKGSGKAINYLT 428 (512)
Q Consensus 407 A~~~l~r~~~~~~va~~v~~L~ 428 (512)
.+.+..+...|+|+++++.+++
T Consensus 223 ~~~~~~~~~~PeeVA~~v~~~~ 244 (285)
T d1jtva_ 223 KQVFREAAQNPEEVAEVFLTAL 244 (285)
T ss_dssp HHHHHHHCBCHHHHHHHHHHHH
T ss_pred hhhhcccCCCHHHHHHHHHHHH
Confidence 2344556778888888887765
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.5e-37 Score=307.50 Aligned_cols=215 Identities=21% Similarity=0.296 Sum_probs=191.1
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCC
Q 010380 175 AGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCE 254 (512)
Q Consensus 175 l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd 254 (512)
|+||++|||||++|||+++|++|+++|++|++++|++++++++.+++.+. .+..+..+.+|+++
T Consensus 12 L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~~~~~~----------------~~~~~~~~~~d~~~ 75 (269)
T d1xu9a_ 12 LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLEL----------------GAASAHYIAGTMED 75 (269)
T ss_dssp GTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH----------------TCSEEEEEECCTTC
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhhh----------------hcccchhhhhhhhh
Confidence 89999999999999999999999999999999999999999998887654 45788999999999
Q ss_pred hhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCC
Q 010380 255 PADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAG 334 (512)
Q Consensus 255 ~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~ 334 (512)
.+.+..+.+.+.+.+|.+|++|||||... ..++.+.+.++|++++++|+.|++.+++.++|+|+++ +|+||++||.
T Consensus 76 ~~~~~~~~~~~~~~~g~~~~li~nag~~~-~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~lp~m~~~--~G~ii~isS~- 151 (269)
T d1xu9a_ 76 MTFAEQFVAQAGKLMGGLDMLILNHITNT-SLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQS--NGSIVVVSSL- 151 (269)
T ss_dssp HHHHHHHHHHHHHHHTSCSEEEECCCCCC-CCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEEEG-
T ss_pred HHHHHHHHHHHHHHhCCcccccccccccc-ccccccCCHHHhhhheeeehhhHHHHHHHHHHHHHhc--CCcceEeccc-
Confidence 99999999999999999999999999987 6788899999999999999999999999999999864 6899999998
Q ss_pred CCCCCCCCcchhhHHHHHHHHHHHHHHHHhC--CCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhcc
Q 010380 335 SGGSSTPLTAVYGSTKCGLRQLQASLFKESK--RSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVP 412 (512)
Q Consensus 335 a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~--~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~ 412 (512)
++..+.|+.++|++||+|+++|+++|+.|++ +.||+||+|+||+|+|+|........ ......+||++|+.++.
T Consensus 152 ~~~~~~p~~~~Y~asKaal~~~~~~La~El~~~~~~I~V~~v~PG~v~T~~~~~~~~~~----~~~~~~~~e~~a~~i~~ 227 (269)
T d1xu9a_ 152 AGKVAYPMVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTETAMKAVSGI----VHMQAAPKEECALEIIK 227 (269)
T ss_dssp GGTSCCTTCHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEECCBCCHHHHHHSCGG----GGGGCBCHHHHHHHHHH
T ss_pred hhcCCCCCchHHHHHHHHHHHHHHHHHHHhhhcCCCEEEEEEecCcCCCcHHHHhccCC----ccccCCCHHHHHHHHHH
Confidence 6889999999999999999999999999997 45799999999999999875322111 12223478999988775
Q ss_pred c
Q 010380 413 R 413 (512)
Q Consensus 413 r 413 (512)
.
T Consensus 228 ~ 228 (269)
T d1xu9a_ 228 G 228 (269)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.4e-38 Score=310.97 Aligned_cols=211 Identities=22% Similarity=0.271 Sum_probs=177.8
Q ss_pred CCEEEEECCCChHHHHHHHHHHHC-CCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCCh
Q 010380 177 PRNVVITGSTRGLGKALAREFLLS-GDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEP 255 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~-Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~ 255 (512)
.+++|||||++|||+++|++|+++ |++|++++|++++++++.++|++ .+.++.++.||++|.
T Consensus 3 ~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~-----------------~~~~~~~~~~Dvs~~ 65 (275)
T d1wmaa1 3 IHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQA-----------------EGLSPRFHQLDIDDL 65 (275)
T ss_dssp CCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHH-----------------TTCCCEEEECCTTCH
T ss_pred CeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHh-----------------cCCcEEEEEEecCCH
Confidence 467799999999999999999986 89999999999999999999877 356788999999999
Q ss_pred hhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCC
Q 010380 256 ADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGS 335 (512)
Q Consensus 256 ~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a 335 (512)
++++++++++.+++|+||+||||||+.. ..+..+.+.++|+++|++|++|+++++++++|+|++ .|+||++||..+
T Consensus 66 ~sv~~~~~~~~~~~g~iDiLVnNAGi~~-~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~---~g~ivnisS~~~ 141 (275)
T d1wmaa1 66 QSIRALRDFLRKEYGGLDVLVNNAGIAF-KVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKP---QGRVVNVSSIMS 141 (275)
T ss_dssp HHHHHHHHHHHHHHSSEEEEEECCCCCC-CTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEE---EEEEEEECCHHH
T ss_pred HHHHHHHHHHHHhcCCcEEEEEcCCcCC-CCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCcccccccce
Confidence 9999999999999999999999999987 577788889999999999999999999999999975 489999998521
Q ss_pred ----------------------------------------CCCCCCCcchhhHHHHHHHHHHHHHHHHhCC----CCeEE
Q 010380 336 ----------------------------------------GGSSTPLTAVYGSTKCGLRQLQASLFKESKR----SKVGV 371 (512)
Q Consensus 336 ----------------------------------------~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~----~GIrV 371 (512)
.........+|++||+|+.+|++.+++|+++ .||+|
T Consensus 142 ~~~~~~~~~y~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aY~~sK~a~~~~t~~la~~l~~~~~~~~I~v 221 (275)
T d1wmaa1 142 VRALKSCSPELQQKFRSETITEEELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILL 221 (275)
T ss_dssp HHHHHTSCHHHHHHHHCSSCCHHHHHHHHHHHHHHHHTTCTTTTTCCSCHHHHHHHHHHHHHHHHHHHHHHHCTTSCCEE
T ss_pred eccccccchhhhhhhcccccchhhhccccccchhcccccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Confidence 0112233467999999999999999999864 59999
Q ss_pred EEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhccccccchh
Q 010380 372 HTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVPRIRVVKG 419 (512)
Q Consensus 372 n~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~r~~~~~~ 419 (512)
|+|+||+|+|+|..... ..+||++|+.++.....+++
T Consensus 222 n~v~PG~v~T~m~~~~~-----------~~~pee~A~~~~~~a~~~~~ 258 (275)
T d1wmaa1 222 NACCPGWVRTDMAGPKA-----------TKSPEEGAETPVYLALLPPD 258 (275)
T ss_dssp EEEECCSBCSTTTCTTC-----------SBCHHHHTHHHHHHHSCCTT
T ss_pred EEEecccccCCcccCcc-----------cCCHHHHHHHHHHHHcCChh
Confidence 99999999999974321 12577777766654444433
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.1e-37 Score=301.04 Aligned_cols=225 Identities=21% Similarity=0.242 Sum_probs=190.1
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
+++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++ +.......+|+.
T Consensus 2 slkGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l--------------------~~~~~~~~~~~~ 61 (248)
T d2o23a1 2 SVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKL--------------------GNNCVFAPADVT 61 (248)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHH--------------------CTTEEEEECCTT
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh--------------------CCCccccccccc
Confidence 689999999999999999999999999999999999999988777665 246778899999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCC-----CCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-----CC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKG-----FKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQ-----PK 323 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~-----~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~-----~~ 323 (512)
+.++++...+.+...++.+|.+++|+++... ..++.+.+.|+|++++++|+.++++++|+++|+|..+ .+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~~~~~ 141 (248)
T d2o23a1 62 SEKDVQTALALAKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQ 141 (248)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSC
T ss_pred ccccccccccccccccccccccccccccccCCCcccccccccchHHHHHHHHhHHHHHHHHHHHHhHHHHHHhhhhccCC
Confidence 9999999999999999999999988876541 2456778899999999999999999999999998754 25
Q ss_pred CCeEEeecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCH
Q 010380 324 GGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELP 403 (512)
Q Consensus 324 ~g~IV~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~p 403 (512)
+|+||++||. .+..+.|+.++|++||+|+++|+++|+.|++++|||||+|+||+++|+|........ ..
T Consensus 142 ~G~Ii~isS~-~~~~~~~~~~~Y~asKaal~~lt~~la~e~~~~gIrvN~I~PG~i~T~~~~~~~~~~----------~~ 210 (248)
T d2o23a1 142 RGVIINTASV-AAFEGQVGQAAYSASKGGIVGMTLPIARDLAPIGIRVMTIAPGLFGTPLLTSLPEKV----------CN 210 (248)
T ss_dssp CEEEEEECCT-HHHHCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCC--------------------C
T ss_pred ceEEEEecch-hhccCCCCchHHHHHHHHHHHHHHHHHHHhcccCcceeeeccCceecchhhcCCHHH----------HH
Confidence 6899999998 677888999999999999999999999999999999999999999999975432211 11
Q ss_pred HHHHHHhc-cccccchhhhhhhhhcCC
Q 010380 404 ETVARTLV-PRIRVVKGSGKAINYLTP 429 (512)
Q Consensus 404 e~vA~~~l-~r~~~~~~va~~v~~L~s 429 (512)
+...+.++ +|+..|+|+++++.||++
T Consensus 211 ~~~~~~pl~~R~g~peevA~~v~fL~s 237 (248)
T d2o23a1 211 FLASQVPFPSRLGDPAEYAHLVQAIIE 237 (248)
T ss_dssp HHHHTCSSSCSCBCHHHHHHHHHHHHH
T ss_pred HHHhcCCCCCCCcCHHHHHHHHHHHHh
Confidence 22233444 889999999999999975
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=100.00 E-value=1.2e-36 Score=297.23 Aligned_cols=192 Identities=20% Similarity=0.254 Sum_probs=167.3
Q ss_pred CCEEEEECCCChHHHHHHHHHH---HCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 177 PRNVVITGSTRGLGKALAREFL---LSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La---~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
-|+||||||++|||+++|++|+ ++|++|++++|++++++++.+ +.+ .+.++.++.||++
T Consensus 2 MKtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~~-~~~-----------------~~~~~~~~~~Dvs 63 (248)
T d1snya_ 2 MNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELED-LAK-----------------NHSNIHILEIDLR 63 (248)
T ss_dssp CSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHH-HHH-----------------HCTTEEEEECCTT
T ss_pred cCEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH-HHh-----------------cCCcEEEEEEEec
Confidence 3899999999999999999996 579999999999998876543 322 2457899999999
Q ss_pred ChhhHHHHHHHHHH--HcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhC----------
Q 010380 254 EPADVQKLSNFAVN--EFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQ---------- 321 (512)
Q Consensus 254 d~~sv~~~~~~i~~--~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~---------- 321 (512)
|+++++++++++.+ .+++||+||||||+.....++.+.+.++|++++++|+.|+++++++++|+|+++
T Consensus 64 ~~~~v~~~~~~i~~~~~~~~iDiLvnNAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~p~l~~~~~~~~~~~~~ 143 (248)
T d1snya_ 64 NFDAYDKLVADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMG 143 (248)
T ss_dssp CGGGHHHHHHHHHHHHGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSS
T ss_pred cHHHHHHHHhhhHHHhhcCCcceEEeeccccccCcccccCCHHHHHHHHHhccccHHHHHHHHHHHHHHhhhcccccccc
Confidence 99999999998854 678999999999997755678899999999999999999999999999999863
Q ss_pred CCCCeEEeecCCCCCC--CCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccC
Q 010380 322 PKGGHIFNMDGAGSGG--SSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLS 386 (512)
Q Consensus 322 ~~~g~IV~vSS~~a~~--~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~ 386 (512)
.+.|+||+++|..+.. .+.++..+|++||+|+.+|+++|+.|++++||+||+|+||+|+|+|...
T Consensus 144 ~~~g~ii~i~S~~g~~~~~~~~~~~~Y~aSKaal~~lt~~la~e~~~~gI~vn~v~PG~v~T~m~~~ 210 (248)
T d1snya_ 144 VGRAAIINMSSILGSIQGNTDGGMYAYRTSKSALNAATKSLSVDLYPQRIMCVSLHPGWVKTDMGGS 210 (248)
T ss_dssp TTTCEEEEECCGGGCSTTCCSCCCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCSBCSTTTCT
T ss_pred ccccccccccccccccCCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCCcccCCcccc
Confidence 2468999999873322 3456778999999999999999999999999999999999999999754
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Probab=100.00 E-value=8.5e-37 Score=298.73 Aligned_cols=212 Identities=18% Similarity=0.269 Sum_probs=167.7
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 175 AGPRNVVITGSTRGLGKALAREFLLSGD--RVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 175 l~gk~vLVTGassGIG~aiA~~La~~Ga--~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
|++|+||||||++|||+++|++|+++|+ +|++++|+.++++++.++ .+.+++++.||+
T Consensus 1 M~~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l~~~--------------------~~~~~~~~~~Dv 60 (250)
T d1yo6a1 1 MSPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSI--------------------KDSRVHVLPLTV 60 (250)
T ss_dssp CCCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHTC--------------------CCTTEEEEECCT
T ss_pred CcCCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHh--------------------hCCceEEEEEec
Confidence 4679999999999999999999999996 799999999887653221 345789999999
Q ss_pred CChhhHHHHHHHHHHHcCC--CcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCC--------
Q 010380 253 CEPADVQKLSNFAVNEFGS--IDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQP-------- 322 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~--IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~-------- 322 (512)
+|+++++++++++.+.++. ||+||||||+..+..++.+.+.++|++++++|+.|++++++.++|+|+++.
T Consensus 61 s~~~~v~~~~~~i~~~~~~~~idilinnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~l~~~~~~~~~~~~ 140 (250)
T d1yo6a1 61 TCDKSLDTFVSKVGEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQL 140 (250)
T ss_dssp TCHHHHHHHHHHHHHHHGGGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCC
T ss_pred CCHHHHHHHHHHHHHHhCCCCeEEEEEcCcccCCCCccccCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccc
Confidence 9999999999999988764 999999999876567788999999999999999999999999999998642
Q ss_pred --CCCeEEeecCCCCC------CCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhh
Q 010380 323 --KGGHIFNMDGAGSG------GSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQ 394 (512)
Q Consensus 323 --~~g~IV~vSS~~a~------~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~ 394 (512)
..++++++++.... ..+..+..+|++||+|+.+|+++|+.|+++.||+||+|+||+|+|+|.....
T Consensus 141 ~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~aY~aSKaal~~l~~~la~el~~~gI~v~~i~PG~v~T~m~~~~~------ 214 (250)
T d1yo6a1 141 SVSRAAVITISSGLGSITDNTSGSAQFPVLAYRMSKAAINMFGRTLAVDLKDDNVLVVNFCPGWVQTNLGGKNA------ 214 (250)
T ss_dssp CTTTCEEEEECCGGGCSTTCCSTTSSSCBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECCCC---------------
T ss_pred cceeccccccccccccccCCcccccchhHHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCCCCCCCCCC------
Confidence 24678888764211 1223345679999999999999999999999999999999999999964321
Q ss_pred hhhhhcCCHHHHHHHhccccccc
Q 010380 395 MFNIICELPETVARTLVPRIRVV 417 (512)
Q Consensus 395 ~~~~~~~~pe~vA~~~l~r~~~~ 417 (512)
..+||+.+..++..+..+
T Consensus 215 -----~~~~e~~a~~~~~~~~~~ 232 (250)
T d1yo6a1 215 -----ALTVEQSTAELISSFNKL 232 (250)
T ss_dssp ---------HHHHHHHHHHHTTC
T ss_pred -----CCCHHHHHHHHHHHHhcC
Confidence 126788888777665543
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Probab=100.00 E-value=2.2e-36 Score=299.51 Aligned_cols=256 Identities=15% Similarity=0.152 Sum_probs=192.4
Q ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEEcC-hhhHHHHHHHHHHHHhhhhhhcCCC-CcccccCceEEEEEccCCCh
Q 010380 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRS-SESVRMTVTELEENLKEGMMAAGGS-SKKNLVHAKVAGIACDVCEP 255 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~-~~~l~~~~~el~~~~~~~~~~~g~~-~~~~~~g~~v~~v~~Dltd~ 255 (512)
.++|||||++|||+++|++|+++|++|++++|+ ++.++++.+++.+..+......... .........+..+.+|++++
T Consensus 3 pVAlITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~dv~~~ 82 (284)
T d1e7wa_ 3 PVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSAPVTLF 82 (284)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCCCC----CCCBCHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHHHhhcCCceEEEEeecccccccccccccccccCCCH
Confidence 579999999999999999999999999998765 5667777777766433211100000 00111223455677889999
Q ss_pred hhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHH--------------HHHHhhhhhHHHHHHHHHHHHHh-
Q 010380 256 ADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIE--------------QIVSTNLVGSILCTREAMRVMRD- 320 (512)
Q Consensus 256 ~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~--------------~~~~vNv~g~~~l~k~~lp~m~~- 320 (512)
++++++++++.+++|+||+||||||+.. ..++.+.+.++|+ .++++|+.++++++|.+.+.+..
T Consensus 83 ~~v~~~~~~~~~~~G~iDiLVnnAG~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~ 161 (284)
T d1e7wa_ 83 TRCAELVAACYTHWGRCDVLVNNASSFY-PTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGT 161 (284)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCCCC-CCCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHhCCCCEEEecCCccC-CCchhhCCHHHhhhhhhhHHHHHHHHHHHHhhheeeeeeeeccccchhhhh
Confidence 9999999999999999999999999987 5777777766655 47899999999999999987643
Q ss_pred ----CCCCCeEEeecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhh
Q 010380 321 ----QPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMF 396 (512)
Q Consensus 321 ----~~~~g~IV~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~ 396 (512)
+...++||+++|. ....+.++..+|++||+|+++|+++|+.|++++|||||+|+||++.|... .... ..
T Consensus 162 ~~~~~~~~~~ii~~~s~-~~~~~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~t~~~~~--~~~~----~~ 234 (284)
T d1e7wa_ 162 PAKHRGTNYSIINMVDA-MTNQPLLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLSVLVDD--MPPA----VW 234 (284)
T ss_dssp CGGGSCSCEEEEEECCT-TTTSCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCCGGG--SCHH----HH
T ss_pred HHHhcCCCCcccccccc-cccCCccceeeeccccccchhhhHHHHHHhCCcccccccccccccccccc--CCHH----HH
Confidence 2356788988887 67788899999999999999999999999999999999999998665432 1111 11
Q ss_pred hhhcCCHHHHHHHh-ccccccchhhhhhhhhcCChHHHHHHHHHHhccCccc
Q 010380 397 NIICELPETVARTL-VPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWF 447 (512)
Q Consensus 397 ~~~~~~pe~vA~~~-l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~ 447 (512)
.+...+.+ .+|+..|+|++.++.||++++..+.++..+..||+|.
T Consensus 235 ------~~~~~~~pl~~R~~~peeiA~~v~fL~S~~s~~itG~~i~VDGG~s 280 (284)
T d1e7wa_ 235 ------EGHRSKVPLYQRDSSAAEVSDVVIFLCSSKAKYITGTCVKVDGGYS 280 (284)
T ss_dssp ------HHHHTTCTTTTSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred ------HHHHhcCCCCCCCCCHHHHHHHHHHHhCchhcCccCCeEEECcChh
Confidence 11222344 4899999999999999999999888898888888873
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.8e-36 Score=296.71 Aligned_cols=245 Identities=14% Similarity=0.137 Sum_probs=206.2
Q ss_pred CCCCCEEEEECCCC--hHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEcc
Q 010380 174 KAGPRNVVITGSTR--GLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACD 251 (512)
Q Consensus 174 ~l~gk~vLVTGass--GIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~D 251 (512)
.|+||++|||||++ |||+++|+.|+++|++|++++|+++..+.+ +++.. ...+...+.+|
T Consensus 2 ~L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~~-~~~~~-----------------~~~~~~~~~~~ 63 (258)
T d1qsga_ 2 FLSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRV-EEFAA-----------------QLGSDIVLQCD 63 (258)
T ss_dssp TTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHH-HHHHH-----------------HTTCCCEEECC
T ss_pred cCCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HHHHh-----------------hcCCcceeecc
Confidence 47899999999998 899999999999999999999996654443 44433 12456678999
Q ss_pred CCChhhHHHHHHHHHHHcCCCcccccccccCCCC----CCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeE
Q 010380 252 VCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGF----KPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHI 327 (512)
Q Consensus 252 ltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~----~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~I 327 (512)
+++..++...++++.+.++++|++||||+..... ....+...+.|...+++|+.+.+.+.+.+.|.|.+ ++.|
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~d~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~I 140 (258)
T d1qsga_ 64 VAEDASIDTMFAELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNP---GSAL 140 (258)
T ss_dssp TTCHHHHHHHHHHHHTTCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEE---EEEE
T ss_pred cchHHHHHHHHHHhhhcccccceEEEeecccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccC---CcEE
Confidence 9999999999999999999999999999986521 12345677889999999999999999999999864 4679
Q ss_pred EeecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHH
Q 010380 328 FNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVA 407 (512)
Q Consensus 328 V~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA 407 (512)
|++||. ++..+.|....|++||+|+++|+++++.|++++|||||+|+||+|+|++......... . ..+...
T Consensus 141 i~iss~-~~~~~~~~~~~Y~~sKaal~~ltr~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~--~------~~~~~~ 211 (258)
T d1qsga_ 141 LTLSYL-GAERAIPNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGIKDFRK--M------LAHCEA 211 (258)
T ss_dssp EEEECG-GGTSBCTTTTHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCCCCTTGGGSTTHHH--H------HHHHHH
T ss_pred EEecch-hhccCCCCcHHHHHHHHHHHHHHHHHHHHhCccCceeecccccccccccccccchhhh--H------HHHHHh
Confidence 999887 6778889999999999999999999999999999999999999999998754322111 1 133456
Q ss_pred HHhccccccchhhhhhhhhcCChHHHHHHHHHHhccCcccc
Q 010380 408 RTLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWFD 448 (512)
Q Consensus 408 ~~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~~ 448 (512)
+.+++|+..|+|+++++.||+++...+.++..+..||+|..
T Consensus 212 ~~pl~R~~~peeia~~v~fL~s~~s~~itG~~i~vDGG~~i 252 (258)
T d1qsga_ 212 VTPIRRTVTIEDVGNSAAFLCSDLSAGISGEVVHVDGGFSI 252 (258)
T ss_dssp HSTTSSCCCHHHHHHHHHHHTSGGGTTCCSCEEEESTTGGG
T ss_pred CCCCCCCcCHHHHHHHHHHHhCchhcCccCceEEECcCHHH
Confidence 78899999999999999999999998999999999998854
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=100.00 E-value=2.7e-36 Score=298.06 Aligned_cols=264 Identities=13% Similarity=0.094 Sum_probs=199.1
Q ss_pred CCCCCEEEEECCCC--hHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEcc
Q 010380 174 KAGPRNVVITGSTR--GLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACD 251 (512)
Q Consensus 174 ~l~gk~vLVTGass--GIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~D 251 (512)
.|+||++|||||+| |||+++|+.|+++|++|++++|+++ +++..+++.+. +....++.+|
T Consensus 2 ~L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~-~~~~~~~l~~~-----------------~~~~~~~~~d 63 (274)
T d2pd4a1 2 FLKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES-LEKRVRPIAQE-----------------LNSPYVYELD 63 (274)
T ss_dssp TTTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT-THHHHHHHHHH-----------------TTCCCEEECC
T ss_pred cCCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHHHHHHhh-----------------CCceeEeeec
Confidence 47899999999765 9999999999999999999999954 44455565552 3456678999
Q ss_pred CCChhhHHHHHHHHHHHcCCCcccccccccCCCCC---CCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEE
Q 010380 252 VCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFK---PLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIF 328 (512)
Q Consensus 252 ltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~---~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV 328 (512)
++++++++++++++.+.+|++|++|||+|...... .+.+...+.+...+.++..+.+.+.+...+. .+.++.|+
T Consensus 64 ~~~~~~~~~~~~~~~~~~g~id~lV~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~ 140 (274)
T d2pd4a1 64 VSKEEHFKSLYNSVKKDLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPL---LNNGASVL 140 (274)
T ss_dssp TTCHHHHHHHHHHHHHHTSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGG---EEEEEEEE
T ss_pred ccchhhHHHHHHHHHHHcCCCCeEEeecccccccccccccccccchhhhhhhccccccccccccccccc---cccCccee
Confidence 99999999999999999999999999999865322 2223334444444445554444444444333 22334566
Q ss_pred eecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHH
Q 010380 329 NMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVAR 408 (512)
Q Consensus 329 ~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~ 408 (512)
++++. +...+.+....|+++|+|+++|+++++.|++++|||||+|+||+++|++......... . .......
T Consensus 141 ~~s~~-~~~~~~~~~~~y~asK~al~~ltr~lA~e~~~~GIrvN~I~PG~v~T~~~~~~~~~~~--~------~~~~~~~ 211 (274)
T d2pd4a1 141 TLSYL-GSTKYMAHYNVMGLAKAALESAVRYLAVDLGKHHIRVNALSAGPIRTLASSGIADFRM--I------LKWNEIN 211 (274)
T ss_dssp EEECG-GGTSBCTTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCTTGGGSTTHHH--H------HHHHHHH
T ss_pred eeccc-ccccccccchhhhHHHHHHHHHHHhhHHHhcCcCceecccccCcccCccccccCchHH--H------HHHHhhh
Confidence 66555 5677788889999999999999999999999999999999999999998754322111 1 1233456
Q ss_pred HhccccccchhhhhhhhhcCChHHHHHHHHHHhccCcccccchhhhh--HHHHHHHHHHHH
Q 010380 409 TLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWFDDQGRALY--AAEADRIRNWAE 467 (512)
Q Consensus 409 ~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~rl~~w~~ 467 (512)
.+++|+..|+|++.++.||+++...+.++..+..||+|........+ +..++++|+..+
T Consensus 212 ~p~~r~~~pedIA~~v~fL~S~~s~~itG~~i~vDGG~~~~g~~~~~~~~~~~~~~~~~~~ 272 (274)
T d2pd4a1 212 APLRKNVSLEEVGNAGMYLLSSLSSGVSGEVHFVDAGYHVMGMGAVEEKDNKATLLWDLHK 272 (274)
T ss_dssp STTSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGGBSSCCCTTCTTTTCCHHHHSS
T ss_pred hhccCCcCHHHHHHHHHHHhChhhCCCcCceEEECCChhhccCCcccccccchhhhhhhhc
Confidence 77899999999999999999999989999999999998655444433 334556776543
|
| >d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=100.00 E-value=4.6e-36 Score=305.20 Aligned_cols=262 Identities=12% Similarity=0.108 Sum_probs=197.2
Q ss_pred CCCEEEEEC--CCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEE-----
Q 010380 176 GPRNVVITG--STRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGI----- 248 (512)
Q Consensus 176 ~gk~vLVTG--assGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v----- 248 (512)
.+|++|||| +++|||+++|+.|+++|++|++++++............+.+........ ..........
T Consensus 1 n~kVAlITGaa~s~GIG~aiA~~la~~GA~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 75 (329)
T d1uh5a_ 1 NEDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDK-----DKKMNILDMLPFDAS 75 (329)
T ss_dssp CCCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHHHTTTTTGGGEETT-----TEECCEEEEEECCTT
T ss_pred CCcEEEEeCCCCCChHHHHHHHHHHHcCCEEEEEeCchhhhhhhHHHHHHhhhhHHHHHH-----Hhhhhhhhcccccce
Confidence 379999999 6689999999999999999999999877655444333222111100000 0001112222
Q ss_pred ---------------EccCCChhhHHHHHHHHHHHcCCCcccccccccCCC-CCCCcCCCHHHHHHHHHhhhhhHHHHHH
Q 010380 249 ---------------ACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKG-FKPLLQFTNEEIEQIVSTNLVGSILCTR 312 (512)
Q Consensus 249 ---------------~~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~-~~~~~~~s~e~~~~~~~vNv~g~~~l~k 312 (512)
.+|+++.++++++++.+.+++|+||+||||||...+ .+++.+++.++|++++++|+.+++.++|
T Consensus 76 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~k 155 (329)
T d1uh5a_ 76 FDTANDIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCK 155 (329)
T ss_dssp CSSGGGCCHHHHTSHHHHTCCCCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHH
T ss_pred ehhhcccchhhhhhhhhhhhhHHHHHHHHHHHHHHhCCCCeeccccccccccCCChhhhhhhhhhhhcccchhHHHHHHH
Confidence 347778999999999999999999999999997653 2578899999999999999999999999
Q ss_pred HHHHHHHhCCCCCeEEeecCCCCCCCCCCC-cchhhHHHHHHHHHHHHHHHHhCC-CCeEEEEEeCCcccCCcccCCcc-
Q 010380 313 EAMRVMRDQPKGGHIFNMDGAGSGGSSTPL-TAVYGSTKCGLRQLQASLFKESKR-SKVGVHTASPGMVLTDLLLSGST- 389 (512)
Q Consensus 313 ~~lp~m~~~~~~g~IV~vSS~~a~~~~~p~-~~~Y~aSKaAl~~l~~sLa~El~~-~GIrVn~V~PG~V~T~~~~~~~~- 389 (512)
+++|+|++ +|+||++||. ++..+.|+ ...|++||+|+++|+++|+.||++ +|||||+|+||+|+|++......
T Consensus 156 ~~~~~m~~---~GsIv~iss~-~~~~~~p~y~~~y~asKaal~~ltr~lA~Ela~~~gIRVNaI~PG~i~T~a~~~i~g~ 231 (329)
T d1uh5a_ 156 YFVNIMKP---QSSIISLTYH-ASQKVVPGYGGGMSSAKAALESDTRVLAYHLGRNYNIRINTISAGPLKSRAATAINKL 231 (329)
T ss_dssp HHGGGEEE---EEEEEEEECG-GGTSCCTTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCTTGGGCC--
T ss_pred HHHhhccc---ccccccceee-hhcccccccchhhhhhhccccccchhhHHHHhcccCcEEEEEecCcccchhhhcccch
Confidence 99999964 5899999987 56667776 568999999999999999999986 69999999999999954321100
Q ss_pred -----------------------------hhhhhhhhhhcC-----CHHHHHHHhccccccchhhhhhhhhcCChHHHHH
Q 010380 390 -----------------------------IQNKQMFNIICE-----LPETVARTLVPRIRVVKGSGKAINYLTPPRILLA 435 (512)
Q Consensus 390 -----------------------------~~~~~~~~~~~~-----~pe~vA~~~l~r~~~~~~va~~v~~L~s~~~~~~ 435 (512)
............ ........+++|+..|+|++.++.||+|+...+.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pl~R~~~pedvA~~v~fLaSd~s~~i 311 (329)
T d1uh5a_ 232 NNTYENNTNQNKNRNRHDVHNIMNNSGEKEEKKISASQNYTFIDYAIEYSEKYAPLRQKLLSTDIGSVASFLLSRESRAI 311 (329)
T ss_dssp ----------------------------------------CHHHHHHHHHHHHSSSCSCCCHHHHHHHHHHHHSGGGTTC
T ss_pred hhhhhhhhhhhhccccccccccccccccccchhhhhhhcccchHHHHHHHhccCCCCCCcCHHHHHHHHHHHhCchhCCc
Confidence 000000000000 1222345689999999999999999999999999
Q ss_pred HHHHHhccCcc
Q 010380 436 LVTAWLRRGRW 446 (512)
Q Consensus 436 ~~~~~~~~g~~ 446 (512)
++..+..||++
T Consensus 312 TGq~i~VDGG~ 322 (329)
T d1uh5a_ 312 TGQTIYVDNGL 322 (329)
T ss_dssp CSCEEEESTTG
T ss_pred cCCeEEECCCc
Confidence 99999999886
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=100.00 E-value=1.1e-35 Score=296.54 Aligned_cols=262 Identities=16% Similarity=0.146 Sum_probs=198.3
Q ss_pred cCCCCCCEEEEECCCC--hHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEE
Q 010380 172 HCKAGPRNVVITGSTR--GLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIA 249 (512)
Q Consensus 172 ~~~l~gk~vLVTGass--GIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~ 249 (512)
.++|+||++|||||++ |||+++|++|+++|++|++++|++................... ..........++..+.
T Consensus 3 ~~~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 79 (297)
T d1d7oa_ 3 PIDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRRGKFDQSRV---LPDGSLMEIKKVYPLD 79 (297)
T ss_dssp CCCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHHHTTTTTGGGB---CTTSSBCCEEEEEEEC
T ss_pred CcCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCchhhhhhHHHHHHhhhhhhhh---hhhhhhhhhhhhhhhh
Confidence 4689999999999875 9999999999999999999999865443332222111000000 0000000011222222
Q ss_pred c------------------cCCChhhHHHHHHHHHHHcCCCcccccccccCCC-CCCCcCCCHHHHHHHHHhhhhhHHHH
Q 010380 250 C------------------DVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKG-FKPLLQFTNEEIEQIVSTNLVGSILC 310 (512)
Q Consensus 250 ~------------------Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~-~~~~~~~s~e~~~~~~~vNv~g~~~l 310 (512)
. |.++..+++++++++.+++|+||+||||||.... ..++.+.+.++|++++++|+.+++++
T Consensus 80 ~~~~~~~~~~~dv~~~~~~~~~~~~~~~~~~~~~~~~~G~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~ 159 (297)
T d1d7oa_ 80 AVFDNPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSL 159 (297)
T ss_dssp TTCCSGGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHH
T ss_pred hhccccccchhhhhhhhhhhhccHHHHHHHHHHHHHHhCCCcccccccccccccccchhhhhcccccccccchhhhhhhh
Confidence 1 2456778899999999999999999999998542 36789999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCeEEeecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhC-CCCeEEEEEeCCcccCCcccCCcc
Q 010380 311 TREAMRVMRDQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESK-RSKVGVHTASPGMVLTDLLLSGST 389 (512)
Q Consensus 311 ~k~~lp~m~~~~~~g~IV~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~-~~GIrVn~V~PG~V~T~~~~~~~~ 389 (512)
+++++|.|.++ +.++++++........+....|+++|+++.++++.++.|++ ++|||||+|+||+|+|++......
T Consensus 160 ~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~y~~aKaa~~~l~~~~a~e~~~~~gIrvN~I~PG~i~T~~~~~~~~ 236 (297)
T d1d7oa_ 160 LSHFLPIMNPG---GASISLTYIASERIIPGYGGGMSSAKAALESDTRVLAFEAGRKQNIRVNTISAGPLGSRAAKAIGF 236 (297)
T ss_dssp HHHHGGGEEEE---EEEEEEECGGGTSCCTTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCBCCCSSCCSH
T ss_pred hhHHHHHhhcC---CcceeeeehhhcccccccccceecccccccccccccchhccccceEEecccccccccchhhhhccC
Confidence 99999988764 56666666534445567788999999999999999999996 579999999999999999754322
Q ss_pred hhhhhhhhhhcCCHHHHHHHhccccccchhhhhhhhhcCChHHHHHHHHHHhccCccc
Q 010380 390 IQNKQMFNIICELPETVARTLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWF 447 (512)
Q Consensus 390 ~~~~~~~~~~~~~pe~vA~~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~ 447 (512)
. ++. ......+.+++|+..|+|++.++.||+++...+.+++.+..||++-
T Consensus 237 ~--~~~------~~~~~~~~PlgR~~~peevA~~v~fL~S~~a~~itGq~i~vDGG~s 286 (297)
T d1d7oa_ 237 I--DTM------IEYSYNNAPIQKTLTADEVGNAAAFLVSPLASAITGATIYVDNGLN 286 (297)
T ss_dssp H--HHH------HHHHHHHSSSCCCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTGG
T ss_pred C--HHH------HHHHHhCCCCCCCCCHHHHHHHHHHHhCchhcCCcCceEEECcCHh
Confidence 1 111 1233445689999999999999999999999999999999999874
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=2.8e-34 Score=278.60 Aligned_cols=208 Identities=13% Similarity=0.076 Sum_probs=172.9
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCCh
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEP 255 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~ 255 (512)
+||+||||||++|||+++|++|+++|++|+++++++.+ .......+.+|.++.
T Consensus 1 egK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~~---------------------------~~~~~~~~~~~~~~~ 53 (236)
T d1dhra_ 1 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENE---------------------------EASASVIVKMTDSFT 53 (236)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCT---------------------------TSSEEEECCCCSCHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCccc---------------------------cccccceeecccCcH
Confidence 58999999999999999999999999999999987643 123455678888889
Q ss_pred hhHHHHHHHHHHHcC--CCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 256 ADVQKLSNFAVNEFG--SIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 256 ~sv~~~~~~i~~~~g--~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
++++.+.+.+.+.++ +||+||||||......++.+.+.++|++++++|+.++++++++++|+|++ +|+||++||.
T Consensus 54 ~~~~~~~~~~~~~~~~~~iD~lInnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~---~G~Iv~isS~ 130 (236)
T d1dhra_ 54 EQADQVTAEVGKLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKE---GGLLTLAGAK 130 (236)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEECCG
T ss_pred HHHHHHHHHHHHHhCCCCceEEEECCcccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhccc---ccceeEEccH
Confidence 999888888877654 69999999997654456677788999999999999999999999999964 5899999998
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHHhC--CCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhc
Q 010380 334 GSGGSSTPLTAVYGSTKCGLRQLQASLFKESK--RSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLV 411 (512)
Q Consensus 334 ~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~--~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l 411 (512)
++..+.|+..+|++||+|+++|+++|+.|++ ++||+||+|+||+|+|||.....+.. ..
T Consensus 131 -~~~~~~~~~~~Y~asKaal~~lt~~la~El~~~~~gI~vn~v~PG~v~T~~~~~~~~~~------------------~~ 191 (236)
T d1dhra_ 131 -AALDGTPGMIGYGMAKGAVHQLCQSLAGKNSGMPSGAAAIAVLPVTLDTPMNRKSMPEA------------------DF 191 (236)
T ss_dssp -GGGSCCTTBHHHHHHHHHHHHHHHHHTSTTSSCCTTCEEEEEEESCEECHHHHHHSTTS------------------CG
T ss_pred -HHcCCccCCcccHHHHHHHHHHHHHHHHHhccCCCcEEEEEEEeccCcCCcchhhCccc------------------hh
Confidence 6788899999999999999999999999998 57999999999999999853211110 12
Q ss_pred cccccchhhhhhhhhcCChHH
Q 010380 412 PRIRVVKGSGKAINYLTPPRI 432 (512)
Q Consensus 412 ~r~~~~~~va~~v~~L~s~~~ 432 (512)
.+...|+++++.+.||+++..
T Consensus 192 ~~~~~pe~va~~~~~l~s~~~ 212 (236)
T d1dhra_ 192 SSWTPLEFLVETFHDWITGNK 212 (236)
T ss_dssp GGSEEHHHHHHHHHHHHTTTT
T ss_pred hcCCCHHHHHHHHHHHhCCCc
Confidence 234556777777788877654
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=100.00 E-value=3.5e-34 Score=281.43 Aligned_cols=249 Identities=12% Similarity=0.102 Sum_probs=194.1
Q ss_pred CCCCCEEEEEC--CCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEcc
Q 010380 174 KAGPRNVVITG--STRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACD 251 (512)
Q Consensus 174 ~l~gk~vLVTG--assGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~D 251 (512)
.|+||++|||| +++|||+++|++|+++|++|++++|+.+++.+ ++.+. .+.+...++||
T Consensus 3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~~~~~---~~~~~----------------~~~~~~~~~~d 63 (268)
T d2h7ma1 3 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQ---RITDR----------------LPAKAPLLELD 63 (268)
T ss_dssp TTTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCHHHHH---HHHTT----------------SSSCCCEEECC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChHHHHH---HHHHH----------------cCCceeeEeee
Confidence 47999999999 46799999999999999999999999876533 22221 34567789999
Q ss_pred CCChhhHHHHHHHHHHHc---CCCcccccccccCC----CCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCC
Q 010380 252 VCEPADVQKLSNFAVNEF---GSIDIWINNAGTNK----GFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKG 324 (512)
Q Consensus 252 ltd~~sv~~~~~~i~~~~---g~IDvLInnAG~~~----~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~ 324 (512)
+++++++.++++.+.+.+ +.||++|||||... ...++.+.+.+++.+.+++|+.+.+...+...+.+..
T Consensus 64 v~~~~~~~~~~~~v~~~~~~~~~ld~~i~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 139 (268)
T d2h7ma1 64 VQNEEHLASLAGRVTEAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNP---- 139 (268)
T ss_dssp TTCHHHHHHHHHHHHHHHCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEE----
T ss_pred cccccccccccchhhhccccCCCcceeeecccccCccccccccccccchhhhhhhhhhhhhHHHHHHHHHhhhccc----
Confidence 999999999999987765 67999999999753 2345678899999999999999999999988776543
Q ss_pred CeEEeecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhh-hhhhhhcCCH
Q 010380 325 GHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNK-QMFNIICELP 403 (512)
Q Consensus 325 g~IV~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~-~~~~~~~~~p 403 (512)
+.+++++|. ....+.|+...|+++|+|+.+|+++++.|++++|||||+|+||+|+|++.......... ..........
T Consensus 140 ~~~i~~~s~-~~~~~~p~~~~y~~sK~a~~~ltr~lA~e~~~~gIrVN~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~ 218 (268)
T d2h7ma1 140 GGSIVGMDF-DPSRAMPAYNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGPIRTLAMSAIVGGALGEEAGAQIQLLE 218 (268)
T ss_dssp EEEEEEEEC-CCSSCCTTTHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCHHHHHHHTTTTCHHHHHHHHHHH
T ss_pred ccccccccc-cccccCcccchhhccccchhhccccchhhhhccCCcceEEecCCCCChhhhhhccchhhhhhccchHHHH
Confidence 234444444 46677889999999999999999999999999999999999999999986432111000 0001000011
Q ss_pred HH-HHHHhccc-cccchhhhhhhhhcCChHHHHHHHHHHhccCcc
Q 010380 404 ET-VARTLVPR-IRVVKGSGKAINYLTPPRILLALVTAWLRRGRW 446 (512)
Q Consensus 404 e~-vA~~~l~r-~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~ 446 (512)
+. ..+.++.+ +..|+|+++++.||+++...+.++..+..||++
T Consensus 219 ~~~~~~~pl~rr~~~p~dva~~v~fL~Sd~a~~iTG~~i~vDGG~ 263 (268)
T d2h7ma1 219 EGWDQRAPIGWNMKDATPVAKTVCALLSDWLPATTGDIIYADGGA 263 (268)
T ss_dssp HHHHHHCTTCCCTTCCHHHHHHHHHHHSSSCTTCCSEEEEESTTG
T ss_pred HHHHhcCCCCCCCCCHHHHHHHHHHHhCchhcCccCCEEEECcCc
Confidence 22 23455554 899999999999999999888888888888876
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=100.00 E-value=1.1e-33 Score=277.04 Aligned_cols=241 Identities=21% Similarity=0.233 Sum_probs=191.1
Q ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhh-HHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCC--
Q 010380 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSES-VRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCE-- 254 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~-l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd-- 254 (512)
.++|||||++|||+++|++|+++|++|++++|+.++ .+++.+++.+. .+.+.....+|+.+
T Consensus 2 ~vAlVTGas~GIG~aia~~la~~G~~Vvi~~r~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~ 65 (266)
T d1mxha_ 2 PAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAA----------------RAGSAVLCKGDLSLSS 65 (266)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHH----------------STTCEEEEECCCSSST
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHHHHHhh----------------cCCceEEEecccccch
Confidence 479999999999999999999999999999998654 46666777653 34567777766654
Q ss_pred --hhhHHHHHHHHHHHcCCCcccccccccCCCCCCC-----------cCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhC
Q 010380 255 --PADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPL-----------LQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQ 321 (512)
Q Consensus 255 --~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~-----------~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~ 321 (512)
++.++++++.+.+++|+||+||||||+..+ .++ .+...+.+...+.+|+.+++...+...+.+...
T Consensus 66 ~~~~~~~~~~~~~~~~~g~iDilvnnAG~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (266)
T d1mxha_ 66 SLLDCCEDIIDCSFRAFGRCDVLVNNASAYYP-TPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEG 144 (266)
T ss_dssp THHHHHHHHHHHHHHHHSCCCEEEECCCCCCC-CCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC---
T ss_pred hHHHHHHHHHHHHHHHhCCCCEEEECCccCCC-Ccccccccccchhcccccccccccccccccccccchhhhhccccccc
Confidence 566778888889999999999999998762 322 233456778889999999999999888877543
Q ss_pred ----CCCCeEEeecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhh
Q 010380 322 ----PKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFN 397 (512)
Q Consensus 322 ----~~~g~IV~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~ 397 (512)
...+.++++++. .+..+.|++..|++||+|+++|+++++.|++++|||||+|+||+|+|++.... ..
T Consensus 145 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~i~t~~~~~~------~~-- 215 (266)
T d1mxha_ 145 GAWRSRNLSVVNLCDA-MTDLPLPGFCVYTMAKHALGGLTRAAALELAPRHIRVNAVAPGLSLLPPAMPQ------ET-- 215 (266)
T ss_dssp ----CCCEEEEEECCG-GGGSCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSCCSSSCH------HH--
T ss_pred cccccccccchhhhhc-cccccCcchhhhhhhHHHHhhhHHHHHHHhCccCcEEEEeccCcEeccccCCH------HH--
Confidence 235677788776 67788899999999999999999999999999999999999999999875321 11
Q ss_pred hhcCCHHHHHHHhccc-cccchhhhhhhhhcCChHHHHHHHHHHhccCcccc
Q 010380 398 IICELPETVARTLVPR-IRVVKGSGKAINYLTPPRILLALVTAWLRRGRWFD 448 (512)
Q Consensus 398 ~~~~~pe~vA~~~l~r-~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~~ 448 (512)
..+..++.+++| ..+|+|+++++.||++++..+.++..+..||+|..
T Consensus 216 ----~~~~~~~~pl~r~~~~peeva~~v~fL~s~~s~~itG~~i~vDGG~~l 263 (266)
T d1mxha_ 216 ----QEEYRRKVPLGQSEASAAQIADAIAFLVSKDAGYITGTTLKVDGGLIL 263 (266)
T ss_dssp ----HHHHHTTCTTTSCCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGG
T ss_pred ----HHHHHhcCCCCCCCCCHHHHHHHHHHHhCchhCCccCCeEEECccHhh
Confidence 012233445644 57999999999999999998889998988998853
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=4.8e-34 Score=275.68 Aligned_cols=228 Identities=22% Similarity=0.213 Sum_probs=185.8
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChh
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPA 256 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~ 256 (512)
+|++|||||++|||+++|++|+++|++|++++|+++. .+...+++|+++..
T Consensus 1 DK~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~-----------------------------~~~~~~~~d~~~~~ 51 (241)
T d1uaya_ 1 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRREG-----------------------------EDLIYVEGDVTREE 51 (241)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCS-----------------------------SSSEEEECCTTCHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCccc-----------------------------ccceEeeccccchh
Confidence 5899999999999999999999999999999998642 34566899999999
Q ss_pred hHHHHHHHHHHHcCCCcccccccccCCC---CCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-----CCCCeEE
Q 010380 257 DVQKLSNFAVNEFGSIDIWINNAGTNKG---FKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQ-----PKGGHIF 328 (512)
Q Consensus 257 sv~~~~~~i~~~~g~IDvLInnAG~~~~---~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~-----~~~g~IV 328 (512)
.+..+.....+... .|.++++++.... .......+.+.|++++++|+.+++.+++.+.+.+.+. .+.|+||
T Consensus 52 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii 130 (241)
T d1uaya_ 52 DVRRAVARAQEEAP-LFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIV 130 (241)
T ss_dssp HHHHHHHHHHHHSC-EEEEEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEE
T ss_pred hhHHHHHhhhcccc-ccchhhhhhccccccccccccchhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcccCceeee
Confidence 99999888776654 4555556654331 2345567889999999999999999999999996432 2578999
Q ss_pred eecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHH
Q 010380 329 NMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVAR 408 (512)
Q Consensus 329 ~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~ 408 (512)
++||. .+..+.|+..+|++||+|+++|+++|+.|++++|||||+|+||+|+|++.......... +...+
T Consensus 131 ~isS~-~~~~~~~~~~~Y~asKaal~~lt~~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~----------~~~~~ 199 (241)
T d1uaya_ 131 NTASV-AAFEGQIGQAAYAASKGGVVALTLPAARELAGWGIRVVTVAPGLFDTPLLQGLPEKAKA----------SLAAQ 199 (241)
T ss_dssp EECCT-HHHHCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSCSSHHHHTSCHHHHH----------HHHTT
T ss_pred eecch-hhccCCCCchhhHHHHHHHHHHHHHHHHHHhhcCCceeeecCCcccccccchhhhhHHH----------HHHhc
Confidence 99998 67788999999999999999999999999999999999999999999987654322211 12223
Q ss_pred Hh-ccccccchhhhhhhhhcCChHHHHHHHHHHhccCccc
Q 010380 409 TL-VPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWF 447 (512)
Q Consensus 409 ~~-l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~ 447 (512)
.+ .+|+..|+|+++++.||++. .+.++..+..||+|.
T Consensus 200 ~~~~~R~g~pedvA~~v~fL~s~--~~iTG~~i~VDGG~~ 237 (241)
T d1uaya_ 200 VPFPPRLGRPEEYAALVLHILEN--PMLNGEVVRLDGALR 237 (241)
T ss_dssp CCSSCSCCCHHHHHHHHHHHHHC--TTCCSCEEEESTTCC
T ss_pred CCCCCCCcCHHHHHHHHHHHHhC--CCCCCCEEEECCccc
Confidence 33 37899999999999999974 357888888888873
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.98 E-value=7e-33 Score=268.27 Aligned_cols=178 Identities=17% Similarity=0.152 Sum_probs=153.2
Q ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhh
Q 010380 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPAD 257 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~s 257 (512)
++||||||++|||+++|++|+++|++|++++|++++. ......+.+|+.+.++
T Consensus 3 gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~ 55 (235)
T d1ooea_ 3 GKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQ---------------------------ADSNILVDGNKNWTEQ 55 (235)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTT---------------------------SSEEEECCTTSCHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCchhc---------------------------ccccceeccccCchhH
Confidence 4579999999999999999999999999999986531 1234456788888888
Q ss_pred HHHHHHHHHH--HcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCC
Q 010380 258 VQKLSNFAVN--EFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGS 335 (512)
Q Consensus 258 v~~~~~~i~~--~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a 335 (512)
.....+.+.+ ++++||+||||||+.....+..+.+.++|+.++++|+.++++++++++|+|++ +|+||++||. +
T Consensus 56 ~~~~~~~~~~~~~~g~iD~linnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~---~g~Iv~isS~-~ 131 (235)
T d1ooea_ 56 EQSILEQTASSLQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKP---GGLLQLTGAA-A 131 (235)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEECCG-G
T ss_pred HHHHHHHHHHHhcCCCeeEEEECCcccccccccccCcHHHHhhHhhhHHHHHHHHhhhccccccc---ceEEEEeccH-H
Confidence 8877777666 45899999999998663345666667899999999999999999999999964 4899999998 6
Q ss_pred CCCCCCCcchhhHHHHHHHHHHHHHHHHhC--CCCeEEEEEeCCcccCCcccC
Q 010380 336 GGSSTPLTAVYGSTKCGLRQLQASLFKESK--RSKVGVHTASPGMVLTDLLLS 386 (512)
Q Consensus 336 ~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~--~~GIrVn~V~PG~V~T~~~~~ 386 (512)
+..+.|+..+|++||+|+++|+++|+.|++ +.+|+||+|+||+++|+|...
T Consensus 132 ~~~~~~~~~~Y~asKaal~~l~~~la~e~~~~~~~i~v~~i~Pg~~~T~~~~~ 184 (235)
T d1ooea_ 132 AMGPTPSMIGYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLDTPMNRK 184 (235)
T ss_dssp GGSCCTTBHHHHHHHHHHHHHHHHHHSTTSSCCTTCEEEEEEESCBCCHHHHH
T ss_pred hcCCcccccchHHHHHHHHHHHHHHHHHhccCCCceEEEEEecCcCcCcchhh
Confidence 788899999999999999999999999998 579999999999999998643
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=99.97 E-value=3.2e-31 Score=258.36 Aligned_cols=218 Identities=16% Similarity=0.164 Sum_probs=162.7
Q ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhh
Q 010380 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPAD 257 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~s 257 (512)
|+||||||++|||+++|++|+++|++|++++|++++ ..+|+++.+.
T Consensus 2 kVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~~----------------------------------~~~d~~~~~~ 47 (257)
T d1fjha_ 2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAE----------------------------------VIADLSTAEG 47 (257)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSS----------------------------------EECCTTSHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChHH----------------------------------HHHHhcCHHH
Confidence 899999999999999999999999999999997542 3579999988
Q ss_pred HHHHHHHHHHH-cCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC---
Q 010380 258 VQKLSNFAVNE-FGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA--- 333 (512)
Q Consensus 258 v~~~~~~i~~~-~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~--- 333 (512)
.+....++..+ .+.+|++|||||+... .+.++....+|..+...+.+...+.+.+. ....+.++++.
T Consensus 48 ~~~~~~~~~~~~~~~id~lv~~Ag~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 118 (257)
T d1fjha_ 48 RKQAIADVLAKCSKGMDGLVLCAGLGPQ--------TKVLGNVVSVNYFGATELMDAFLPALKKG-HQPAAVVISSVASA 118 (257)
T ss_dssp HHHHHHHHHTTCTTCCSEEEECCCCCTT--------CSSHHHHHHHHTHHHHHHHHHHHHHHHTS-SSCEEEEECCGGGG
T ss_pred HHHHHHHHHHHhCCCCcEEEEcCCCCCc--------HHHHHHHHHHHHHHHHHHHHHhhhhhhhh-ccCcceeeeecccc
Confidence 88876665544 4679999999997541 24578889999999999999999998775 33344444332
Q ss_pred ------------------------CCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcc
Q 010380 334 ------------------------GSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGST 389 (512)
Q Consensus 334 ------------------------~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~ 389 (512)
.+.....++..+|++||+|+++|+++|+.||+++|||||+|+||+|+||+......
T Consensus 119 ~~~~~~~~~~~~~~~g~~~~i~s~~~~~~~~~~~~~Y~asKaal~~ltr~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~ 198 (257)
T d1fjha_ 119 HLAFDKNPLALALEAGEEAKARAIVEHAGEQGGNLAYAGSKNALTVAVRKRAAAWGEAGVRLNTIAPGATETPLLQAGLQ 198 (257)
T ss_dssp SSCGGGCTTHHHHHHTCHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECC-----------
T ss_pred chhhhhhhhhhhccCCcEEEEeeehhccCCCcchHHHHHHhhhhhccccccccccccccccccccccCCcCChhHHhhcC
Confidence 11111223445799999999999999999999999999999999999999754322
Q ss_pred hhhhhhhhhhcCCHHHHHH--HhccccccchhhhhhhhhcCChHHHHHHHHHHhccCccc
Q 010380 390 IQNKQMFNIICELPETVAR--TLVPRIRVVKGSGKAINYLTPPRILLALVTAWLRRGRWF 447 (512)
Q Consensus 390 ~~~~~~~~~~~~~pe~vA~--~~l~r~~~~~~va~~v~~L~s~~~~~~~~~~~~~~g~~~ 447 (512)
... ..+..++ .+++|+..|+|+++++.||++++..+.++..+..||+|.
T Consensus 199 ~~~---------~~~~~~~~~~PlgR~g~p~eva~~v~fL~S~~s~~itG~~i~vDGG~t 249 (257)
T d1fjha_ 199 DPR---------YGESIAKFVPPMGRRAEPSEMASVIAFLMSPAASYVHGAQIVIDGGID 249 (257)
T ss_dssp -------------------CCCSTTSCCCTHHHHHHHHHHTSGGGTTCCSCEEEESTTHH
T ss_pred CHH---------HHHHHHhcCCCCCCCcCHHHHHHHHHHHhCchhCCccCceEEeCCCcc
Confidence 111 1222333 478999999999999999999999999999999999883
|
| >d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=99.96 E-value=1.2e-29 Score=248.29 Aligned_cols=209 Identities=21% Similarity=0.229 Sum_probs=161.8
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcCh---hhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSGD-RVVVASRSS---ESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~---~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
++++|||||++|||+++|++|+++|+ +|++++|+. +..++..+++.+ .+.++.++.||+
T Consensus 9 ~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~-----------------~g~~v~~~~~Dv 71 (259)
T d2fr1a1 9 TGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEA-----------------LGARTTVAACDV 71 (259)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHH-----------------TTCEEEEEECCT
T ss_pred cCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCHHHHHHHHHHHHh-----------------cccccccccccc
Confidence 46999999999999999999999998 699999974 345555555544 467899999999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|+++++++++.+.+. +++|++|||||+.. ..++.+.+.++|++++++|+.+++++.+.+ ... +.++||++||
T Consensus 72 ~d~~~~~~~~~~i~~~-~~i~~vv~~ag~~~-~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~----~~~-~~~~iv~~SS 144 (259)
T d2fr1a1 72 TDRESVRELLGGIGDD-VPLSAVFHAAATLD-DGTVDTLTGERIERASRAKVLGARNLHELT----REL-DLTAFVLFSS 144 (259)
T ss_dssp TCHHHHHHHHHTSCTT-SCEEEEEECCCCCC-CCCGGGCCHHHHHHHTHHHHHHHHHHHHHH----TTS-CCSEEEEEEE
T ss_pred chHHHHHHhhcccccc-cccccccccccccc-ccccccccHHHHHHHhhhhccchhHHHHHh----hcc-CCceEeeecc
Confidence 9999999999987654 68999999999988 689999999999999999999999987753 333 5689999999
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhcc
Q 010380 333 AGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLVP 412 (512)
Q Consensus 333 ~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l~ 412 (512)
. ++..+.++++.|+++|+++++|++.++. .||+|++|+||.+.++...............+...+|+++++.+..
T Consensus 145 ~-a~~~g~~~~~~YaAaka~l~~la~~~~~----~Gi~v~~I~pg~~~~~g~~~~~~~~~~~~~G~~~~~~~~~~~~l~~ 219 (259)
T d2fr1a1 145 F-ASAFGAPGLGGYAPGNAYLDGLAQQRRS----DGLPATAVAWGTWAGSGMAEGPVADRFRRHGVIEMPPETACRALQN 219 (259)
T ss_dssp H-HHHTCCTTCTTTHHHHHHHHHHHHHHHH----TTCCCEEEEECCBC------------CTTTTEECBCHHHHHHHHHH
T ss_pred h-hhccCCcccHHHHHHHHhHHHHHHHHHh----CCCCEEECCCCcccCCccccchHHHHHHhcCCCCCCHHHHHHHHHH
Confidence 8 6788899999999999999988877665 4899999999998765432211111101111223467777776554
Q ss_pred cc
Q 010380 413 RI 414 (512)
Q Consensus 413 r~ 414 (512)
.+
T Consensus 220 ~l 221 (259)
T d2fr1a1 220 AL 221 (259)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=99.74 E-value=8.6e-20 Score=170.22 Aligned_cols=155 Identities=12% Similarity=0.058 Sum_probs=115.4
Q ss_pred cCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEcc
Q 010380 172 HCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACD 251 (512)
Q Consensus 172 ~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~D 251 (512)
..+++||+++||||++|||+++|+.|+++|++|++++|+.++++++.+++.+. .++....+|
T Consensus 18 ~~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~------------------~~~~~~~~d 79 (191)
T d1luaa1 18 GGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKR------------------FKVNVTAAE 79 (191)
T ss_dssp TSCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHH------------------HTCCCEEEE
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhc------------------cchhhhhhh
Confidence 45899999999999999999999999999999999999999999888888663 234458899
Q ss_pred CCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeec
Q 010380 252 VCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD 331 (512)
Q Consensus 252 ltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vS 331 (512)
++|.+++++++ +++|+||||||+.. ...+.|+|+..+++|+.+.+++...+.+.+......++++..+
T Consensus 80 ~~~~~~~~~~~-------~~iDilin~Ag~g~-----~~~~~e~~~~~~~~nv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (191)
T d1luaa1 80 TADDASRAEAV-------KGAHFVFTAGAIGL-----ELLPQAAWQNESSIEIVADYNAQPPLGIGGIDATDKGKEYGGK 147 (191)
T ss_dssp CCSHHHHHHHT-------TTCSEEEECCCTTC-----CCBCHHHHHTCTTCCEEEECCCSSSCSBTTCCTTCEEEEETTE
T ss_pred cccHHHHHHHh-------cCcCeeeecCcccc-----ccCCHHHHHhhhcceeehhHhhHHHHHHHhhhhccCcEEecce
Confidence 99999877654 57999999999742 4578999999999999998876655433333221222322221
Q ss_pred CCCCCCCCCCCcchhhHHHHHHHHHHH
Q 010380 332 GAGSGGSSTPLTAVYGSTKCGLRQLQA 358 (512)
Q Consensus 332 S~~a~~~~~p~~~~Y~aSKaAl~~l~~ 358 (512)
+. .+.. ..+...|+++|+++..+.+
T Consensus 148 ~~-~g~~-~~g~~~y~~sk~a~~~l~~ 172 (191)
T d1luaa1 148 RA-FGAL-GIGGLKLKLHRACIAKLFE 172 (191)
T ss_dssp EE-ECHH-HHHHHHHHHHHHHHHHHTS
T ss_pred EE-Eecc-CcCcHHHHHHHHHHHHHHh
Confidence 11 1110 1233569999999988764
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=99.62 E-value=2.4e-15 Score=152.32 Aligned_cols=179 Identities=13% Similarity=0.013 Sum_probs=127.9
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHH-HHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCCh
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVR-MTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEP 255 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~-~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~ 255 (512)
.|+||||||+|-||..++++|+++|++|+.++|...... ...+.+.... .....++.++.+|++|.
T Consensus 1 ~K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~Dl~d~ 67 (357)
T d1db3a_ 1 SKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDP-------------HTCNPKFHLHYGDLSDT 67 (357)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECC----------------------------------CCEEECCCCSSCH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHHhhh-------------hhcCCCeEEEEeecCCH
Confidence 388999999999999999999999999999999643211 1111111110 01345789999999999
Q ss_pred hhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCC
Q 010380 256 ADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGS 335 (512)
Q Consensus 256 ~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a 335 (512)
++++++++.. .+|++||.|+..... .+.++.+..+++|+.|+.++++++...-.+ +..++|++||...
T Consensus 68 ~~~~~~~~~~-----~~d~v~h~aa~~~~~-----~~~~~~~~~~~~Nv~gt~nllea~~~~~~~--~~~r~i~~SS~~v 135 (357)
T d1db3a_ 68 SNLTRILREV-----QPDEVYNLGAMSHVA-----VSFESPEYTADVDAMGTLRLLEAIRFLGLE--KKTRFYQASTSEL 135 (357)
T ss_dssp HHHHHHHHHH-----CCSEEEECCCCCTTT-----TTTSCHHHHHHHHTHHHHHHHHHHHHTTCT--TTCEEEEEEEGGG
T ss_pred HHHHHHHhcc-----CCCEEEEeecccccc-----hhhhCHHHHHHHHHHHHHHHHHHHHHhCCC--CCcEEEEEEchhh
Confidence 9999998865 689999999986521 223455778999999999998887554222 3457999987521
Q ss_pred C-C---C------CCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCc
Q 010380 336 G-G---S------STPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDL 383 (512)
Q Consensus 336 ~-~---~------~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~ 383 (512)
. . . +..+...|+.||.+.+.+++.+++.+ |+.+..+.|+.|-.|.
T Consensus 136 YG~~~~~~~~E~~~~~P~~~Y~~sK~~~E~~~~~~~~~~---~l~~~ilR~~~vyGp~ 190 (357)
T d1db3a_ 136 YGLVQEIPQKETTPFYPRSPYAVAKLYAYWITVNYRESY---GMYACNGILFNHESPR 190 (357)
T ss_dssp GTTCCSSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH---CCCEEEEEECCEECTT
T ss_pred hCCCCCCCcCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCCEEEEEeccccCCC
Confidence 1 1 1 12235689999999999999998876 6889999998887774
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.54 E-value=7.6e-14 Score=142.37 Aligned_cols=176 Identities=13% Similarity=0.100 Sum_probs=128.4
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChh----------------hHHHHHHHHHHHHhhhhhhcCCCCcccc
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSE----------------SVRMTVTELEENLKEGMMAAGGSSKKNL 240 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~----------------~l~~~~~el~~~~~~~~~~~g~~~~~~~ 240 (512)
|+.||||||+|-||.+++++|+++|++|++++.-.. ...+........
T Consensus 1 g~kILVTGatGfiG~~lv~~Ll~~g~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 64 (393)
T d1i24a_ 1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKAL---------------- 64 (393)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHH----------------
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEecCCcccccccccccccccccchHHHHHHHHhh----------------
Confidence 688999999999999999999999999999872111 111111222111
Q ss_pred cCceEEEEEccCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHh
Q 010380 241 VHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRD 320 (512)
Q Consensus 241 ~g~~v~~v~~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~ 320 (512)
.+.++.++.+|++|.+.++++++.. ++|+|||.|+... .+....+.+.....+++|+.|..++++++...-
T Consensus 65 ~~~~i~~~~~Dl~d~~~l~~~~~~~-----~~d~ViHlAa~~~--~~~s~~~~~~~~~~~~~Nv~gt~nll~~~~~~~-- 135 (393)
T d1i24a_ 65 TGKSIELYVGDICDFEFLAESFKSF-----EPDSVVHFGEQRS--APYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFG-- 135 (393)
T ss_dssp HCCCCEEEESCTTSHHHHHHHHHHH-----CCSEEEECCSCCC--HHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred cCCCcEEEEccCCCHHHHHHHHHhh-----cchheeccccccc--cccccccccccccccccccccccHHHHHHHHhc--
Confidence 2457899999999999999988865 7999999998753 233445667778899999999999988876542
Q ss_pred CCCCCeEEeecCCCCCCC-----------------------CCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCC
Q 010380 321 QPKGGHIFNMDGAGSGGS-----------------------STPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPG 377 (512)
Q Consensus 321 ~~~~g~IV~vSS~~a~~~-----------------------~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG 377 (512)
...++++.||...... +..+...|+.||.+.+.+++.++.+. ++.+.++.|+
T Consensus 136 --~~~~~i~~ss~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~Y~~sK~~aE~~~~~~~~~~---~l~~~~lR~~ 210 (393)
T d1i24a_ 136 --EECHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQG 210 (393)
T ss_dssp --TTCEEEEECCGGGGCCCSSCBCSSEEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHH---CCEEEEEEEC
T ss_pred --cccceeeccccccccccccccccccccccccccccccccccccccHHHHHhhhhccccccccccc---ceeeeecccc
Confidence 2335666666422110 11223579999999999999888876 6899999998
Q ss_pred cccCC
Q 010380 378 MVLTD 382 (512)
Q Consensus 378 ~V~T~ 382 (512)
.|--+
T Consensus 211 ~v~G~ 215 (393)
T d1i24a_ 211 VVYGV 215 (393)
T ss_dssp EEECS
T ss_pred cccCC
Confidence 77755
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=1.3e-13 Score=128.56 Aligned_cols=194 Identities=14% Similarity=0.073 Sum_probs=122.0
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCC
Q 010380 175 AGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCE 254 (512)
Q Consensus 175 l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd 254 (512)
|..|+|+||||||+||.+++++|+++|++|.++.|+++++... ....+.++.+|++|
T Consensus 1 m~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~-----------------------~~~~~~~~~gD~~d 57 (205)
T d1hdoa_ 1 MAVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSE-----------------------GPRPAHVVVGDVLQ 57 (205)
T ss_dssp CCCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSS-----------------------SCCCSEEEESCTTS
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcccc-----------------------cccccccccccccc
Confidence 3568899999999999999999999999999999998764210 23457789999999
Q ss_pred hhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCC
Q 010380 255 PADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAG 334 (512)
Q Consensus 255 ~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~ 334 (512)
.+++.++++ ..|+||+++|...+.. .. +++..+..++ ++.+++. +-.++|++||.+
T Consensus 58 ~~~l~~al~-------~~d~vi~~~g~~~~~~-~~-----------~~~~~~~~~l----~~aa~~~-~v~r~i~~ss~~ 113 (205)
T d1hdoa_ 58 AADVDKTVA-------GQDAVIVLLGTRNDLS-PT-----------TVMSEGARNI----VAAMKAH-GVDKVVACTSAF 113 (205)
T ss_dssp HHHHHHHHT-------TCSEEEECCCCTTCCS-CC-----------CHHHHHHHHH----HHHHHHH-TCCEEEEECCGG
T ss_pred hhhHHHHhc-------CCCEEEEEeccCCchh-hh-----------hhhHHHHHHH----HHHHHhc-CCCeEEEEeeee
Confidence 998877654 5899999999754211 11 1223333333 3444444 456899998863
Q ss_pred CCCCC---CCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCcchhhhhhhhhhcCCHHHHHHHhc
Q 010380 335 SGGSS---TPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGSTIQNKQMFNIICELPETVARTLV 411 (512)
Q Consensus 335 a~~~~---~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~~~~~~~~~~~~~~~pe~vA~~~l 411 (512)
....+ .+....|...|.+.+.+.+ ..|+....|.||.+.................+....+.+++|+.++
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~e~~l~-------~~~~~~tiirp~~~~~~~~~~~~~~~~~~~~~~~~i~~~DvA~~~~ 186 (205)
T d1hdoa_ 114 LLWDPTKVPPRLQAVTDDHIRMHKVLR-------ESGLKYVAVMPPHIGDQPLTGAYTVTLDGRGPSRVISKHDLGHFML 186 (205)
T ss_dssp GTSCTTCSCGGGHHHHHHHHHHHHHHH-------HTCSEEEEECCSEEECCCCCSCCEEESSSCSSCSEEEHHHHHHHHH
T ss_pred ccCCCccccccccccchHHHHHHHHHH-------hcCCceEEEecceecCCCCcccEEEeeCCCCCCCcCCHHHHHHHHH
Confidence 32221 1222356666666554332 3589999999998854322111110000001111125677888777
Q ss_pred cccccchhhhh
Q 010380 412 PRIRVVKGSGK 422 (512)
Q Consensus 412 ~r~~~~~~va~ 422 (512)
..+..++-.++
T Consensus 187 ~~l~~~~~~g~ 197 (205)
T d1hdoa_ 187 RCLTTDEYDGH 197 (205)
T ss_dssp HTTSCSTTTTC
T ss_pred HHhCCCCCCCE
Confidence 76666554443
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=99.49 E-value=1.3e-13 Score=138.32 Aligned_cols=175 Identities=13% Similarity=0.142 Sum_probs=126.5
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
-.+||+||||||+|-||..++++|+++|++|+.+.|+..+...+........ .......+..|++
T Consensus 8 ~~~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~~---------------~~~~~~~~~~Dl~ 72 (342)
T d1y1pa1 8 LPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKY---------------PGRFETAVVEDML 72 (342)
T ss_dssp SCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHS---------------TTTEEEEECSCTT
T ss_pred CCCcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhccc---------------cccccEEEecccc
Confidence 3469999999999999999999999999999999999877655443222210 2234556778999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
|.+++..++. .+|+++|+|+... ...+ ....+.+|+.|+.++++.+.. ...-.++|++||.
T Consensus 73 ~~~~~~~~~~-------~~~~v~~~a~~~~-----~~~~---~~~~~~~nv~gt~~ll~~~~~----~~~v~~~i~~SS~ 133 (342)
T d1y1pa1 73 KQGAYDEVIK-------GAAGVAHIASVVS-----FSNK---YDEVVTPAIGGTLNALRAAAA----TPSVKRFVLTSST 133 (342)
T ss_dssp STTTTTTTTT-------TCSEEEECCCCCS-----CCSC---HHHHHHHHHHHHHHHHHHHHT----CTTCCEEEEECCG
T ss_pred chhhhhhhcc-------cchhhhhhccccc-----cccc---ccccccchhhhHHHHHHhhhc----ccccccccccccc
Confidence 9988776543 5899999998643 1122 345678899998888777644 2234689999886
Q ss_pred CCCCCCCC------------------------------CcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCc
Q 010380 334 GSGGSSTP------------------------------LTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDL 383 (512)
Q Consensus 334 ~a~~~~~p------------------------------~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~ 383 (512)
.+...+.+ ....|+.||.+.+.++..++++.. .++++.+++|+.|--|.
T Consensus 134 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~e~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~-~~~~~~~i~p~~v~Gp~ 212 (342)
T d1y1pa1 134 VSALIPKPNVEGIYLDEKSWNLESIDKAKTLPESDPQKSLWVYAASKTEAELAAWKFMDENK-PHFTLNAVLPNYTIGTI 212 (342)
T ss_dssp GGTCCCCTTCCCCEECTTCCCHHHHHHHHHSCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHC-CSSEEEEEEESEEECCC
T ss_pred eeeccCCCCCCCccccccccccccccccccccccCCCCCcCcccchhHhHHHHHHHhhhhcc-cccccceecccceeCCC
Confidence 32221111 124699999999999999888774 46888899998876553
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=99.49 E-value=1.3e-13 Score=137.98 Aligned_cols=171 Identities=16% Similarity=0.140 Sum_probs=125.0
Q ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhhH
Q 010380 179 NVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPADV 258 (512)
Q Consensus 179 ~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~sv 258 (512)
.||||||+|-||..++++|+++|++|++++|.....+.....+... ...++.++++|++|.+.+
T Consensus 2 KiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~----------------~~~~~~~~~~Dl~d~~~l 65 (338)
T d1udca_ 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERL----------------GGKHPTFVEGDIRNEALM 65 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHH----------------HTSCCEEEECCTTCHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHhh----------------cCCCCEEEEeecCCHHHH
Confidence 3899999999999999999999999999987422211112222111 235788999999999999
Q ss_pred HHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCC
Q 010380 259 QKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGS 338 (512)
Q Consensus 259 ~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~~~ 338 (512)
.++++.. ++|+|||.|+... ...+.++.+..+++|+.|+.++++++... +-.++|++||......
T Consensus 66 ~~~~~~~-----~~d~ViHlAa~~~-----~~~~~~~~~~~~~~Nv~gt~nlL~~~~~~-----~v~~~i~~Ss~~vy~~ 130 (338)
T d1udca_ 66 TEILHDH-----AIDTVIHFAGLKA-----VGESVQKPLEYYDNNVNGTLRLISAMRAA-----NVKNFIFSSSATVYGD 130 (338)
T ss_dssp HHHHHHT-----TCSEEEECCSCCC-----HHHHHHCHHHHHHHHHHHHHHHHHHHHHH-----TCCEEEEEEEGGGGCS
T ss_pred HHHHhcc-----CCCEEEECCCccc-----hhhHHhCHHHHHHhHHHHHHHHHHHHHHh-----CCCEEEecCcceEEcc
Confidence 8887753 6899999999643 11233445688999999999999988765 2347888887532110
Q ss_pred -----------CCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCC
Q 010380 339 -----------STPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTD 382 (512)
Q Consensus 339 -----------~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~ 382 (512)
.......|+.+|.+.+.+.+....+.. ++.+..+.|+.|-.+
T Consensus 131 ~~~~~~~e~~~~~~p~~~Y~~sK~~~e~~~~~~~~~~~--~~~~~ilR~~~v~G~ 183 (338)
T d1udca_ 131 QPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQP--DWSIALLRYFNPVGA 183 (338)
T ss_dssp CCSSSBCTTSCCCCCSSHHHHHHHHHHHHHHHHHHHST--TCEEEEEEECEEECC
T ss_pred ccccccccccccCCCcchHHHHHhhhhHHHHHHHhhcc--CCeEEEEeeccEEec
Confidence 112356799999999999988887753 678888888887765
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.48 E-value=1.6e-13 Score=137.59 Aligned_cols=172 Identities=19% Similarity=0.190 Sum_probs=122.5
Q ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhh
Q 010380 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPAD 257 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~s 257 (512)
|+||||||+|-||..++++|+++|++|+++++....-.......... ...++.++.+|++|.++
T Consensus 2 K~ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~~~~~~~~~~~~~~~~----------------~~~~v~~~~~Dl~d~~~ 65 (347)
T d1z45a2 2 KIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVL----------------TKHHIPFYEVDLCDRKG 65 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHHHHH----------------HTSCCCEEECCTTCHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcCeEEEEECCCCcchhHHHhHHhh----------------cccCCeEEEeecCCHHH
Confidence 78999999999999999999999999999876422111111111111 23567889999999999
Q ss_pred HHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCCC
Q 010380 258 VQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGG 337 (512)
Q Consensus 258 v~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~~ 337 (512)
+++++... ++|+|||+|+.... ....+.-+....+|+.|..++.+++... +-.++|++||.....
T Consensus 66 l~~~~~~~-----~~d~VihlAa~~~~-----~~~~~~~~~~~~~N~~~t~~ll~~~~~~-----~i~~~i~~SS~~vyg 130 (347)
T d1z45a2 66 LEKVFKEY-----KIDSVIHFAGLKAV-----GESTQIPLRYYHNNILGTVVLLELMQQY-----NVSKFVFSSSATVYG 130 (347)
T ss_dssp HHHHHHHS-----CCCEEEECCSCCCH-----HHHHHSHHHHHHHHHHHHHHHHHHHHHH-----TCCEEEEEEEGGGGC
T ss_pred HHHHHhcc-----CCCEEEEccccccc-----cccccCcccccccchhhhHHHHHHHHhc-----ccceEEeecceeeec
Confidence 99887643 69999999997431 1122344677889999999999988653 234789988852211
Q ss_pred --------------CCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccC
Q 010380 338 --------------SSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLT 381 (512)
Q Consensus 338 --------------~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T 381 (512)
.+..+...|+.||.+.+.+.+.+.... ..++.+..+.|+.|-.
T Consensus 131 ~~~~~~~~~~~~e~~~~~p~~~Y~~sK~~~E~~~~~~~~~~-~~~~~~~~lR~~~v~g 187 (347)
T d1z45a2 131 DATRFPNMIPIPEECPLGPTNPYGHTKYAIENILNDLYNSD-KKSWKFAILRYFNPIG 187 (347)
T ss_dssp CGGGSTTCCSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHS-TTSCEEEEEEECEEEC
T ss_pred CcccCCCCCccccccCCCCCChhHhHHHHHHHHHHHHHHhh-ccCCcEEEEeecceEe
Confidence 112234679999999999999887654 3467787777765543
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=4.1e-13 Score=133.97 Aligned_cols=174 Identities=14% Similarity=0.032 Sum_probs=123.8
Q ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhh-----HHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSES-----VRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~-----l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
|+||||||+|-||.+++++|+++|++|+.++|.... ++........ ....++.++.+|+
T Consensus 2 KI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~Dl 65 (347)
T d1t2aa_ 2 NVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQA----------------HIEGNMKLHYGDL 65 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTGGGC-------------------------CEEEEECCT
T ss_pred CEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHhhchhh----------------hccCCcEEEEeec
Confidence 455999999999999999999999999999996432 1111111111 0235789999999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+|.+.+..+++.. .+++++|.|+... ...+.+.....+++|+.|+.++.+++..+-.. +..++|++||
T Consensus 66 ~d~~~~~~~~~~~-----~~~~v~~~~a~~~-----~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~--~~~~~i~~SS 133 (347)
T d1t2aa_ 66 TDSTCLVKIINEV-----KPTEIYNLGAQSH-----VKISFDLAEYTADVDGVGTLRLLDAVKTCGLI--NSVKFYQAST 133 (347)
T ss_dssp TCHHHHHHHHHHH-----CCSEEEECCSCCC-----HHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCT--TTCEEEEEEE
T ss_pred CCchhhHHHHhhc-----ccceeeeeeeccc-----cchhhccchhhhhhHHHHHHHHHHHHHHcCCC--CCcEEEEecc
Confidence 9999999988765 6788888887643 12233455667899999999998887654322 2347999987
Q ss_pred CCCCC----------CCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCC
Q 010380 333 AGSGG----------SSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTD 382 (512)
Q Consensus 333 ~~a~~----------~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~ 382 (512)
..... .+..+...|+.||.+.+.+++.++..+ ++.+..+.|+.|--|
T Consensus 134 ~~vyg~~~~~~~~E~~~~~P~~~Yg~sK~~aE~~~~~~~~~~---~~~~~ilr~~~vyGp 190 (347)
T d1t2aa_ 134 SELYGKVQEIPQKETTPFYPRSPYGAAKLYAYWIVVNFREAY---NLFAVNGILFNHESP 190 (347)
T ss_dssp GGGTCSCSSSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH---CCEEEEEEECCEECT
T ss_pred hheecCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh---CCCEEEEEecceeCC
Confidence 62111 112234679999999999999988876 688888888776655
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.44 E-value=5.6e-13 Score=132.35 Aligned_cols=178 Identities=13% Similarity=0.057 Sum_probs=128.4
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChh-----hHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEcc
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSE-----SVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACD 251 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~-----~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~D 251 (512)
.|++|||||||-||.+++++|+++|++|+.++|... +++........ .....+.++.+|
T Consensus 1 ~k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~D 64 (339)
T d1n7ha_ 1 RKIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHN----------------VNKALMKLHYAD 64 (339)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTTTTC------------------------CCEEEEECC
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCcCEEEEEECCCcccchhhhhhhhhhhhh----------------ccccceEEEEcc
Confidence 389999999999999999999999999999998532 22111111111 123568889999
Q ss_pred CCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeec
Q 010380 252 VCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD 331 (512)
Q Consensus 252 ltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vS 331 (512)
+++.+++.+.++.. ++|++||.|+... .....++....+++|+.+...+..++...........+++..|
T Consensus 65 i~~~~~~~~~~~~~-----~~D~Vih~Aa~~~-----~~~~~~~p~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~s 134 (339)
T d1n7ha_ 65 LTDASSLRRWIDVI-----KPDEVYNLAAQSH-----VAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAG 134 (339)
T ss_dssp TTCHHHHHHHHHHH-----CCSEEEECCSCCC-----HHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_pred ccCHHHHHHHHhhh-----ccchhhhcccccc-----ccccccCccccccccccccchhhhhhhhcccccccceeeeecc
Confidence 99999999887754 7999999999743 1123355678889999999999988876655432334555555
Q ss_pred CCCCCC---------CCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCc
Q 010380 332 GAGSGG---------SSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDL 383 (512)
Q Consensus 332 S~~a~~---------~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~ 383 (512)
|..... .+..+...|+.+|.+.+.++...++.. |+.+.++.|+.|--|.
T Consensus 135 s~~~~~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilR~~~vyGp~ 192 (339)
T d1n7ha_ 135 SSEMFGSTPPPQSETTPFHPRSPYAASKCAAHWYTVNYREAY---GLFACNGILFNHESPR 192 (339)
T ss_dssp EGGGGTTSCSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH---CCEEEEEEECCEECTT
T ss_pred cceecccCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHh---CCCEEEEEEccccCCC
Confidence 431111 112345689999999999999988876 6999999998887664
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.43 E-value=2.1e-13 Score=136.29 Aligned_cols=181 Identities=15% Similarity=0.071 Sum_probs=128.3
Q ss_pred ccCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEc
Q 010380 171 EHCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIAC 250 (512)
Q Consensus 171 ~~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~ 250 (512)
+......|++|||||+|.||.+++++|.++|++|+.++|....-....+.+...... .....+.++.+
T Consensus 10 ~~~~~~~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~ 77 (341)
T d1sb8a_ 10 KELPAQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSE------------KQWSNFKFIQG 77 (341)
T ss_dssp HHHHHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCH------------HHHTTEEEEEC
T ss_pred HhCCCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHHhhhh------------cccCCeeEEee
Confidence 345567899999999999999999999999999999987432211222222111100 01246888999
Q ss_pred cCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEee
Q 010380 251 DVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNM 330 (512)
Q Consensus 251 Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~v 330 (512)
|+.|........ ...+.++|.++... ...+.++....+++|+.|+.++.+++... +..++|++
T Consensus 78 d~~d~~~~~~~~-------~~~~~v~~~~a~~~-----~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~-----~~~~~i~~ 140 (341)
T d1sb8a_ 78 DIRNLDDCNNAC-------AGVDYVLHQAALGS-----VPRSINDPITSNATNIDGFLNMLIAARDA-----KVQSFTYA 140 (341)
T ss_dssp CTTSHHHHHHHH-------TTCSEEEECCSCCC-----HHHHHHCHHHHHHHHTHHHHHHHHHHHHT-----TCSEEEEE
T ss_pred cccccccccccc-------cccccccccccccc-----ccccccCccchhheeehhHHHHHHHHHhc-----CCceEEEc
Confidence 999888655432 35788888776533 12245667889999999999998887543 34589999
Q ss_pred cCCCCCC----------CCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCc
Q 010380 331 DGAGSGG----------SSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDL 383 (512)
Q Consensus 331 SS~~a~~----------~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~ 383 (512)
||..... .+..+...|+.||.+.+.+++.+++.. ++++..+.|+.|-.+.
T Consensus 141 SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~i~~~ilR~~~v~G~~ 200 (341)
T d1sb8a_ 141 ASSSTYGDHPGLPKVEDTIGKPLSPYAVTKYVNELYADVFSRCY---GFSTIGLRYFNVFGRR 200 (341)
T ss_dssp EEGGGGTTCCCSSBCTTCCCCCCSHHHHHHHHHHHHHHHHHHHH---CCCCEEEEECCEECTT
T ss_pred ccceeeCCCCCCCccCCCCCCCCCcchHHHHHHHHHHHHHHHHh---CCCeEEEEeceeeccC
Confidence 8863211 112234789999999999999998876 6888899998887654
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.39 E-value=1.1e-12 Score=129.37 Aligned_cols=172 Identities=15% Similarity=0.014 Sum_probs=124.1
Q ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhh
Q 010380 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPAD 257 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~s 257 (512)
|+||||||+|.||.+++++|+++|++|+.++|...... ...+.... ...++.++.+|++|.++
T Consensus 1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~~~~--~~~l~~~~---------------~~~~~~~~~~Dl~d~~~ 63 (321)
T d1rpna_ 1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDT--RWRLRELG---------------IEGDIQYEDGDMADACS 63 (321)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCC--CHHHHHTT---------------CGGGEEEEECCTTCHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCccc--HHHHHHhc---------------ccCCcEEEEccccChHH
Confidence 78999999999999999999999999999998753211 11111110 23568999999999999
Q ss_pred HHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCCC
Q 010380 258 VQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGG 337 (512)
Q Consensus 258 v~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~~ 337 (512)
+.+.+... ..++++++|+.... ....+.....+.+|+.|+.++++++...- ...++++.||.....
T Consensus 64 ~~~~~~~~-----~~~~~~~~a~~~~~-----~~~~~~~~~~~~~n~~g~~~~l~~~~~~~----~~~~~i~~Ss~~~~~ 129 (321)
T d1rpna_ 64 VQRAVIKA-----QPQEVYNLAAQSFV-----GASWNQPVTTGVVDGLGVTHLLEAIRQFS----PETRFYQASTSEMFG 129 (321)
T ss_dssp HHHHHHHH-----CCSEEEECCSCCCH-----HHHTTSHHHHHHHHTHHHHHHHHHHHHHC----TTSEEEEEEEGGGGC
T ss_pred hhhhhccc-----cccccccccccccc-----cccccchHHHHhhhhhchHHHHHHHHHhC----CCcccccccchhhcC
Confidence 98887765 57788888776431 11123456788999999999988776542 234677776642111
Q ss_pred ----------CCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCc
Q 010380 338 ----------SSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDL 383 (512)
Q Consensus 338 ----------~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~ 383 (512)
.+......|+.+|.+.+.+.+.++.+. ++.+.++.|+.+--|.
T Consensus 130 ~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~~lr~~~vyGp~ 182 (321)
T d1rpna_ 130 LIQAERQDENTPFYPRSPYGVAKLYGHWITVNYRESF---GLHASSGILFNHESPL 182 (321)
T ss_dssp SCSSSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH---CCCEEEEEECCEECTT
T ss_pred cccCCCCCCCCCccccChhHHHHHHHHHHHHHHHhhc---CCcEEEEEEecccCCC
Confidence 112245789999999999999998886 5888888887776654
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=99.36 E-value=2.2e-12 Score=128.79 Aligned_cols=176 Identities=16% Similarity=0.079 Sum_probs=128.7
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCC
Q 010380 175 AGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCE 254 (512)
Q Consensus 175 l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd 254 (512)
+++|+||||||+|-||.++++.|+++|++|++++|+..+.....+... ....+.++.+|++|
T Consensus 6 ~~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~------------------~~~~i~~~~~Dl~d 67 (356)
T d1rkxa_ 6 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETAR------------------VADGMQSEIGDIRD 67 (356)
T ss_dssp HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTT------------------TTTTSEEEECCTTC
T ss_pred hCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCccHHHHhhhh------------------cccCCeEEEeeccC
Confidence 478999999999999999999999999999999998765433222211 12458889999999
Q ss_pred hhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCC
Q 010380 255 PADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAG 334 (512)
Q Consensus 255 ~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~ 334 (512)
++.+.++++.. .+|+++|.|+... ...+.+..+..+++|+.|..++.+++...- ....++..|+..
T Consensus 68 ~~~l~~~~~~~-----~~~~v~~~aa~~~-----~~~~~~~~~~~~~~Nv~g~~n~l~~~~~~~----~~~~~~~~s~~~ 133 (356)
T d1rkxa_ 68 QNKLLESIREF-----QPEIVFHMAAQPL-----VRLSYSEPVETYSTNVMGTVYLLEAIRHVG----GVKAVVNITSDK 133 (356)
T ss_dssp HHHHHHHHHHH-----CCSEEEECCSCCC-----HHHHHHCHHHHHHHHTHHHHHHHHHHHHHC----CCCEEEEECCGG
T ss_pred hHhhhhhhhhc-----hhhhhhhhhcccc-----ccccccCCccccccccccchhhhhhhhccc----cccccccccccc
Confidence 99998887754 7899999998643 122345567789999999999988876532 233555555432
Q ss_pred CCCC-----------CCCCcchhhHHHHHHHHHHHHHHHHhCC------CCeEEEEEeCCcccCC
Q 010380 335 SGGS-----------STPLTAVYGSTKCGLRQLQASLFKESKR------SKVGVHTASPGMVLTD 382 (512)
Q Consensus 335 a~~~-----------~~p~~~~Y~aSKaAl~~l~~sLa~El~~------~GIrVn~V~PG~V~T~ 382 (512)
.... +..+...|+.+|.+.+.+.+..+.++.- .++.+..+.|+.+--|
T Consensus 134 ~~~~~~~~~~~~~~~~~~p~~~y~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~vyGp 198 (356)
T d1rkxa_ 134 CYDNKEWIWGYRENEAMGGYDPYSNSKGCAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGG 198 (356)
T ss_dssp GBCCCCSSSCBCTTSCBCCSSHHHHHHHHHHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECT
T ss_pred cccccccccccccccccCCCCccccccccchhhhhHHhhhcccchhccccCceEEeccCCCeeCC
Confidence 1111 1123457999999999999998887642 4688889988877544
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=99.35 E-value=2.2e-12 Score=130.43 Aligned_cols=175 Identities=13% Similarity=0.148 Sum_probs=125.1
Q ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEE-EEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhh
Q 010380 179 NVVITGSTRGLGKALAREFLLSGDRVVV-ASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPAD 257 (512)
Q Consensus 179 ~vLVTGassGIG~aiA~~La~~Ga~Vvl-~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~s 257 (512)
.||||||+|-||.+++++|++.|++|++ +++...... ...+.. .....++.++.+|++|.+.
T Consensus 2 kILItG~tGfIGs~l~~~L~~~g~~vv~~~d~~~~~~~--~~~~~~---------------~~~~~~~~~~~~Dl~d~~~ 64 (361)
T d1kewa_ 2 KILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGN--LESLSD---------------ISESNRYNFEHADICDSAE 64 (361)
T ss_dssp EEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCC--GGGGTT---------------TTTCTTEEEEECCTTCHHH
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcccc--HHHHHh---------------hhhcCCcEEEEccCCCHHH
Confidence 4899999999999999999999997554 443221100 000100 0123578999999999999
Q ss_pred HHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhC----CCCCeEEeecCC
Q 010380 258 VQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQ----PKGGHIFNMDGA 333 (512)
Q Consensus 258 v~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~----~~~g~IV~vSS~ 333 (512)
+.++++.. .+|+|||+|+.... ..+.++....+++|+.|..++.+++....... .+..++|++||.
T Consensus 65 l~~~~~~~-----~~d~VihlAa~~~~-----~~~~~~p~~~~~~N~~gt~nl~~~~~~~~~~~~~~~~~~~~~i~~SS~ 134 (361)
T d1kewa_ 65 ITRIFEQY-----QPDAVMHLAAESHV-----DRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTD 134 (361)
T ss_dssp HHHHHHHH-----CCSEEEECCSCCCH-----HHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEG
T ss_pred HHHHHHhC-----CCCEEEECccccch-----hhHHhCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCceEEEEeccc
Confidence 99887754 79999999986431 12233446789999999999999988765431 023479999885
Q ss_pred CCCC--------------------CCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCc
Q 010380 334 GSGG--------------------SSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDL 383 (512)
Q Consensus 334 ~a~~--------------------~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~ 383 (512)
.... .+..+...|+.||.+.+.+++.++..+ |+.+.++.|+.|--|.
T Consensus 135 ~vyg~~~~~~~~~~~~~~~~~~e~~~~~p~s~Yg~sK~~~E~~~~~~~~~~---~i~~~~lR~~~vyGp~ 201 (361)
T d1kewa_ 135 EVYGDLPHPDEVENSVTLPLFTETTAYAPSSPYSASKASSDHLVRAWRRTY---GLPTIVTNCSNNYGPY 201 (361)
T ss_dssp GGGCCCCCGGGSCTTSCCCCBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH---CCCEEEEEECEEESTT
T ss_pred eeeCCCccCCccccccCCCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHh---CCCEEEEecCceECcC
Confidence 3111 111234569999999999999999877 6889999998887664
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Probab=99.34 E-value=2.7e-12 Score=126.24 Aligned_cols=152 Identities=15% Similarity=0.123 Sum_probs=115.3
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChh
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPA 256 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~ 256 (512)
.|.||||||+|-||.+++++|+++|+.|+++++.. .+|+.|.+
T Consensus 2 kkkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~~-------------------------------------~~~~~~~~ 44 (315)
T d1e6ua_ 2 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRD-------------------------------------ELNLLDSR 44 (315)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTT-------------------------------------TCCTTCHH
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCch-------------------------------------hccccCHH
Confidence 46799999999999999999999999988765421 14899998
Q ss_pred hHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCC
Q 010380 257 DVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSG 336 (512)
Q Consensus 257 sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~ 336 (512)
.+..+++.- .+|.++|+|+.... ......+....+++|+.|+.++++++... +-.++|++||.. .
T Consensus 45 ~~~~~~~~~-----~~d~v~~~a~~~~~----~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~-----~v~~~i~~SS~~-v 109 (315)
T d1e6ua_ 45 AVHDFFASE-----RIDQVYLAAAKVGG----IVANNTYPADFIYQNMMIESNIIHAAHQN-----DVNKLLFLGSSC-I 109 (315)
T ss_dssp HHHHHHHHH-----CCSEEEECCCCCCC----HHHHHHCHHHHHHHHHHHHHHHHHHHHHT-----TCCEEEEECCGG-G
T ss_pred HHHHHHhhc-----CCCEEEEcchhccc----cccchhhHHHHHHHHHHHHHHHHHHHHHc-----CCCEEEEECCce-E
Confidence 888876532 68999999976431 11233445667889999999998877543 334799999863 2
Q ss_pred CCC----------------CCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCc
Q 010380 337 GSS----------------TPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDL 383 (512)
Q Consensus 337 ~~~----------------~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~ 383 (512)
..+ .+....|+.||.+.+.+++.+.++. |+++..+.|+.|--|.
T Consensus 110 yg~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ilR~~~vyGp~ 169 (315)
T d1e6ua_ 110 YPKLAKQPMAESELLQGTLEPTNEPYAIAKIAGIKLCESYNRQY---GRDYRSVMPTNLYGPH 169 (315)
T ss_dssp SCTTCCSSBCGGGTTSSCCCGGGHHHHHHHHHHHHHHHHHHHHH---CCEEEEEEECEEESTT
T ss_pred cCCCCCCCccCCccccCCCCCCCCHHHHHHHHHHHHHHHHHHHh---CCCEEEEeeccEECCC
Confidence 211 1123469999999999999998887 7999999998887653
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=99.33 E-value=1.3e-11 Score=121.60 Aligned_cols=154 Identities=16% Similarity=0.075 Sum_probs=109.7
Q ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEEcChh-hHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhh
Q 010380 179 NVVITGSTRGLGKALAREFLLSGDRVVVASRSSE-SVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPAD 257 (512)
Q Consensus 179 ~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~-~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~s 257 (512)
.||||||+|-||..++++|+++|++|+.+++-.. ........+. ...++.++.+|++|.++
T Consensus 2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~~~~~~~~~~~~~~~------------------~~~~~~~i~~Di~~~~~ 63 (338)
T d1orra_ 2 KLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLS------------------SLGNFEFVHGDIRNKND 63 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHH------------------TTCCCEEEECCTTCHHH
T ss_pred EEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhHHHHhh------------------ccCCcEEEEcccCCHHH
Confidence 4899999999999999999999999999875321 1111122221 23568889999999999
Q ss_pred HHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCCC
Q 010380 258 VQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGG 337 (512)
Q Consensus 258 v~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~~ 337 (512)
+.++++.. ++|++||+|+.... ....++.+..+++|+.|+.++++++...- ..+.|++||..+..
T Consensus 64 l~~~~~~~-----~~d~Vih~aa~~~~-----~~~~~~~~~~~~~Nv~gt~nll~~~~~~~-----~~~~i~~sS~~~~~ 128 (338)
T d1orra_ 64 VTRLITKY-----MPDSCFHLAGQVAM-----TTSIDNPCMDFEINVGGTLNLLEAVRQYN-----SNCNIIYSSTNKVY 128 (338)
T ss_dssp HHHHHHHH-----CCSEEEECCCCCCH-----HHHHHCHHHHHHHHHHHHHHHHHHHHHHC-----TTCEEEEEEEGGGG
T ss_pred HHHHHHhc-----CCceEEeecccccc-----cccccChHHHHHHHHHHHHHHHHhhhccc-----cccccccccccccc
Confidence 99888765 68999999987541 12234557889999999999998776542 23344444431111
Q ss_pred C---------------------------CCCCcchhhHHHHHHHHHHHHHHHHhC
Q 010380 338 S---------------------------STPLTAVYGSTKCGLRQLQASLFKESK 365 (512)
Q Consensus 338 ~---------------------------~~p~~~~Y~aSKaAl~~l~~sLa~El~ 365 (512)
. .......|+.+|...+.+.......+.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~k~~~e~~~~~~~~~~~ 183 (338)
T d1orra_ 129 GDLEQYKYNETETRYTCVDKPNGYDESTQLDFHSPYGCSKGAADQYMLDYARIFG 183 (338)
T ss_dssp TTCTTSCEEECSSCEEETTCTTCBCTTSCCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccccccccccccccccccccccCcccCCccccccccccccchhhhhhhhhhhccC
Confidence 1 112346799999999999999888874
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.32 E-value=5.8e-12 Score=125.79 Aligned_cols=172 Identities=17% Similarity=0.094 Sum_probs=121.3
Q ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEEc------ChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEcc
Q 010380 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASR------SSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACD 251 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R------~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~D 251 (512)
|.||||||+|-||.+++++|+++|++|+.+++ +........+.+... ...++.++.+|
T Consensus 3 kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~D 66 (346)
T d1ek6a_ 3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQEL----------------TGRSVEFEEMD 66 (346)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHH----------------HTCCCEEEECC
T ss_pred CeEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCccccccccchHHHHHHHHh----------------cCCCcEEEEee
Confidence 67899999999999999999999999999874 211111222222221 23578899999
Q ss_pred CCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeec
Q 010380 252 VCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD 331 (512)
Q Consensus 252 ltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vS 331 (512)
++|.+.+++++.. ..+|+++|.|+.... ..+.++....+++|+.|..++.+++... +-.+++++|
T Consensus 67 l~d~~~l~~~~~~-----~~~~~i~h~Aa~~~~-----~~~~~~p~~~~~~Nv~gt~~l~~~~~~~-----~v~~~i~~s 131 (346)
T d1ek6a_ 67 ILDQGALQRLFKK-----YSFMAVIHFAGLKAV-----GESVQKPLDYYRVNLTGTIQLLEIMKAH-----GVKNLVFSS 131 (346)
T ss_dssp TTCHHHHHHHHHH-----CCEEEEEECCSCCCH-----HHHHHCHHHHHHHHHHHHHHHHHHHHHT-----TCCEEEEEE
T ss_pred ccccccccccccc-----cccccccccccccCc-----HhhHhCHHHHHHhhhcccccccchhhhc-----Ccccccccc
Confidence 9999999887764 368899999997541 1223345678999999999888776432 334788887
Q ss_pred CCCCCCCC-----------CCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCC
Q 010380 332 GAGSGGSS-----------TPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTD 382 (512)
Q Consensus 332 S~~a~~~~-----------~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~ 382 (512)
|....... ......|+.+|.+.+...+.+++.. .++....+.|+.+-.+
T Consensus 132 s~~~~~~~~~~~~~~~~~~~~~~~~Y~~~k~~~e~~~~~~~~~~--~~~~~~~lR~~~v~G~ 191 (346)
T d1ek6a_ 132 SATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQAD--KTWNAVLLRYFNPTGA 191 (346)
T ss_dssp EGGGGCSCSSSSBCTTSCCCCCSSHHHHHHHHHHHHHHHHHHHC--TTCEEEEEEECEEECC
T ss_pred cceeeeccccccccccccccccCChHHHHHHHHHHHHHHHHHhc--cCCceEEEeecceecc
Confidence 65221111 1234579999999999988877643 3678888888776654
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.30 E-value=1.2e-11 Score=124.21 Aligned_cols=174 Identities=14% Similarity=0.059 Sum_probs=125.8
Q ss_pred cccccCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEE
Q 010380 168 VLEEHCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAG 247 (512)
Q Consensus 168 ~~~~~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~ 247 (512)
..++..+-++..||||||+|-||.+++++|.++|++|+++++...... ........+
T Consensus 6 ~~~~~~~~~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~~~-----------------------~~~~~~~~~ 62 (363)
T d2c5aa1 6 EREQYWPSENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHM-----------------------TEDMFCDEF 62 (363)
T ss_dssp CCCCSCTTSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSS-----------------------CGGGTCSEE
T ss_pred cccCcCCCCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCccch-----------------------hhhcccCcE
Confidence 334444557778999999999999999999999999999987543210 001123456
Q ss_pred EEccCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeE
Q 010380 248 IACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHI 327 (512)
Q Consensus 248 v~~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~I 327 (512)
..+|+.+.+++.++++ .+|.+||.|+.... .....+.....+.+|+.+..+++.++... +-.++
T Consensus 63 ~~~D~~~~~~~~~~~~-------~~d~Vih~a~~~~~----~~~~~~~~~~~~~~n~~gt~~ll~~~~~~-----~vk~~ 126 (363)
T d2c5aa1 63 HLVDLRVMENCLKVTE-------GVDHVFNLAADMGG----MGFIQSNHSVIMYNNTMISFNMIEAARIN-----GIKRF 126 (363)
T ss_dssp EECCTTSHHHHHHHHT-------TCSEEEECCCCCCC----HHHHTTCHHHHHHHHHHHHHHHHHHHHHT-----TCSEE
T ss_pred EEeechhHHHHHHHhh-------cCCeEeeccccccc----ccccccccccccccccchhhHHHHhHHhh-----Ccccc
Confidence 7789988877655442 68999999987541 12223456778899999999988887553 34579
Q ss_pred EeecCCCCCCC-----------------CCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCc
Q 010380 328 FNMDGAGSGGS-----------------STPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDL 383 (512)
Q Consensus 328 V~vSS~~a~~~-----------------~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~ 383 (512)
|++||...... +..+...|+.||.+.+.+++.+.++. |+.+..+.|+.|-.+.
T Consensus 127 i~~SS~~~~~~~~~~~~~~~~~~~~e~~~~~p~~~Yg~sK~~~E~~~~~~~~~~---gl~~~ilR~~~vyG~~ 196 (363)
T d2c5aa1 127 FYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAFGLEKLATEELCKHYNKDF---GIECRIGRFHNIYGPF 196 (363)
T ss_dssp EEEEEGGGSCGGGSSSSSSCEECGGGGSSBCCSSHHHHHHHHHHHHHHHHHHHH---CCEEEEEEECCEECTT
T ss_pred ccccccccccccccccccccccccccCCcCCCCCHHHHHHHHHHHHHHHHHHHh---CCCEEEEEeeeEeccC
Confidence 99988632211 11224579999999999999998887 6999999998887653
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=99.27 E-value=3.5e-12 Score=127.59 Aligned_cols=170 Identities=13% Similarity=0.130 Sum_probs=117.5
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChh
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPA 256 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~ 256 (512)
-|.||||||||-||..++++|+++|+.|.+++++.-.-...... .....+.++.++.+|++|.+
T Consensus 2 ~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d~~~~~~~~~~----------------~~~~~~~~i~~~~~Di~d~~ 65 (346)
T d1oc2a_ 2 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKAN----------------LEAILGDRVELVVGDIADAE 65 (346)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGG----------------TGGGCSSSEEEEECCTTCHH
T ss_pred cCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEeCCCccccHHH----------------HHHhhcCCeEEEEccCCCHH
Confidence 37899999999999999999999998655554431000000000 00113468999999999998
Q ss_pred hHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCC
Q 010380 257 DVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSG 336 (512)
Q Consensus 257 sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~ 336 (512)
.+..++. ..|.++|.|+.... ....++.+..+++|+.|..+++..+... +.++|++||....
T Consensus 66 ~~~~~~~-------~~~~v~~~a~~~~~-----~~~~~~~~~~~~~N~~g~~nll~~~~~~------~~k~i~~ss~~vy 127 (346)
T d1oc2a_ 66 LVDKLAA-------KADAIVHYAAESHN-----DNSLNDPSPFIHTNFIGTYTLLEAARKY------DIRFHHVSTDEVY 127 (346)
T ss_dssp HHHHHHT-------TCSEEEECCSCCCH-----HHHHHCCHHHHHHHTHHHHHHHHHHHHH------TCEEEEEEEGGGG
T ss_pred HHHHHHh-------hhhhhhhhhhcccc-----cchhhCcccceeeehHhHHhhhhhhccc------cccccccccceEe
Confidence 8877653 57888899887541 1122344678899999999998877544 2356666654211
Q ss_pred -CC---------------------CCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCc
Q 010380 337 -GS---------------------STPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDL 383 (512)
Q Consensus 337 -~~---------------------~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~ 383 (512)
.. +..+...|+.+|.+.+.+++...++. |+++.++.|+.|--|-
T Consensus 128 g~~~~~~~~~~~~~~~~~~~~e~~~~~p~s~Y~~sK~~~E~~~~~~~~~~---~i~~~ilR~~~vyGp~ 193 (346)
T d1oc2a_ 128 GDLPLREDLPGHGEGPGEKFTAETNYNPSSPYSSTKAASDLIVKAWVRSF---GVKATISNCSNNYGPY 193 (346)
T ss_dssp CCBCCGGGSTTTTCSTTSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH---CCEEEEEEECCEESTT
T ss_pred cccCccccccccccCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHc---CCCEEEEeecceeCCC
Confidence 00 11123679999999999999998876 7999999999887653
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=99.26 E-value=1.5e-11 Score=122.46 Aligned_cols=163 Identities=12% Similarity=0.055 Sum_probs=117.7
Q ss_pred EEEEECCCChHHHHHHHHHHHCC-CEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhh
Q 010380 179 NVVITGSTRGLGKALAREFLLSG-DRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPAD 257 (512)
Q Consensus 179 ~vLVTGassGIG~aiA~~La~~G-a~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~s 257 (512)
+||||||+|-||.+++++|+++| ++|+.+++........ ....++.++.+|+++.++
T Consensus 2 KILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~----------------------~~~~~~~~i~~Di~~~~~ 59 (342)
T d2blla1 2 RVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRF----------------------LNHPHFHFVEGDISIHSE 59 (342)
T ss_dssp EEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGG----------------------TTCTTEEEEECCTTTCSH
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhh----------------------ccCCCeEEEECccCChHH
Confidence 48999999999999999999999 5899988865432211 023578999999999877
Q ss_pred HHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCCC
Q 010380 258 VQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGG 337 (512)
Q Consensus 258 v~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~~ 337 (512)
+.+.+. + .+|++||+|+.... ....++....+++|+.|..++.+++... +.+++++||.....
T Consensus 60 ~~~~~~---~---~~d~Vih~a~~~~~-----~~~~~~~~~~~~~nv~gt~~ll~~~~~~------~~~~~~~ss~~~~~ 122 (342)
T d2blla1 60 WIEYHV---K---KCDVVLPLVAIATP-----IEYTRNPLRVFELDFEENLRIIRYCVKY------RKRIIFPSTSEVYG 122 (342)
T ss_dssp HHHHHH---H---HCSEEEECBCCCCH-----HHHHHSHHHHHHHHTHHHHHHHHHHHHT------TCEEEEECCGGGGB
T ss_pred HHHHHH---h---CCCccccccccccc-----cccccCCccccccccccccccccccccc------cccccccccccccc
Confidence 655332 1 48999999997541 1122344678999999999998886442 23556666542111
Q ss_pred CC-----------------CCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCc
Q 010380 338 SS-----------------TPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDL 383 (512)
Q Consensus 338 ~~-----------------~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~ 383 (512)
.. ..+...|+.||.+.+.+.+.+++.. |+.+..+.|..+-.+-
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~i~r~~~~~g~~ 182 (342)
T d2blla1 123 MCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKE---GLQFTLFRPFNWMGPR 182 (342)
T ss_dssp TCCCSSBCTTTCCCBCCCTTCGGGHHHHHHHHHHHHHHHHHHHH---CCCEEEEEECSEECSS
T ss_pred cccccccccccccccccccCCCcchhhhcccchhhhhhhhhccc---CceeEEeecccccccc
Confidence 00 1123579999999999999999887 6888888888887653
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.24 E-value=3.2e-11 Score=111.96 Aligned_cols=167 Identities=14% Similarity=0.162 Sum_probs=107.7
Q ss_pred CEEEEECCCChHHHHHHHHHHHCCCE--EEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCCh
Q 010380 178 RNVVITGSTRGLGKALAREFLLSGDR--VVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEP 255 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~Ga~--Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~ 255 (512)
++||||||+|.||.++++.|+++|++ |+...|++++.+. ...++.++.+|+++.
T Consensus 4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~------------------------~~~~~~~~~~d~~~~ 59 (252)
T d2q46a1 4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEK------------------------IGGEADVFIGDITDA 59 (252)
T ss_dssp CEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHH------------------------TTCCTTEEECCTTSH
T ss_pred CEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHh------------------------ccCCcEEEEeeeccc
Confidence 78999999999999999999999964 6667888765431 124567799999999
Q ss_pred hhHHHHHHHHHHHcCCCcccccccccCCCCCC--------CcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeE
Q 010380 256 ADVQKLSNFAVNEFGSIDIWINNAGTNKGFKP--------LLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHI 327 (512)
Q Consensus 256 ~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~--------~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~I 327 (512)
+++.++++ .+|.+||+|+....... ..............+|+.+...+....... ..+..
T Consensus 60 ~~~~~~~~-------~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 127 (252)
T d2q46a1 60 DSINPAFQ-------GIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVA-----GVKHI 127 (252)
T ss_dssp HHHHHHHT-------TCSEEEECCCCCCEECTTCCTTSCCCCCEECCTTCSHHHHTTHHHHHHHHHHHHH-----TCSEE
T ss_pred cccccccc-------cceeeEEEEeeccccccccchhhhhhcccccccchhhhccccccceeeccccccc-----ccccc
Confidence 98877654 68999999987531111 111122345566788999988887766544 24567
Q ss_pred EeecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCc
Q 010380 328 FNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDL 383 (512)
Q Consensus 328 V~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~ 383 (512)
...++........+....|...+.........+..+ .|+++.++.||.+-.+.
T Consensus 128 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ilRp~~v~g~~ 180 (252)
T d2q46a1 128 VVVGSMGGTNPDHPLNKLGNGNILVWKRKAEQYLAD---SGTPYTIIRAGGLLDKE 180 (252)
T ss_dssp EEEEETTTTCTTCGGGGGGGCCHHHHHHHHHHHHHH---SSSCEEEEEECEEECSC
T ss_pred ccccccccCCCCcccccccccchhhhhhhhhhhhhc---ccccceeecceEEECCC
Confidence 777665322222222222222222222223333333 47999999999987664
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.24 E-value=8.7e-11 Score=118.89 Aligned_cols=180 Identities=14% Similarity=0.080 Sum_probs=123.4
Q ss_pred CEEEEECCCChHHHHHHHHHHH-CCCEEEEEEc---------ChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEE
Q 010380 178 RNVVITGSTRGLGKALAREFLL-SGDRVVVASR---------SSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAG 247 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~-~Ga~Vvl~~R---------~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~ 247 (512)
..||||||+|-||..++++|++ .|++|+++++ ..+..+.....+.... ..........+.+
T Consensus 3 MKVLITG~tGfIGs~lv~~LL~~~~~~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~ 73 (383)
T d1gy8a_ 3 MRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSD---------GPKPPWADRYAAL 73 (383)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSC---------SSCCTTTTCCCEE
T ss_pred CEEEEeCCCcHHHHHHHHHHHHhCCCEEEEEecCCcccccchhhhhhhhHHHHhhhhc---------cccccccccceEE
Confidence 3589999999999999999986 7899999874 1222223222222210 0111113346788
Q ss_pred EEccCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeE
Q 010380 248 IACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHI 327 (512)
Q Consensus 248 v~~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~I 327 (512)
+.+|++|.+.++++++. ..++|++||.|+.... ....+.....+++|+.+...+++++... +..++
T Consensus 74 ~~~Di~d~~~l~~~~~~----~~~~d~ViH~Aa~~~~-----~~~~~~~~~~~~~N~~~t~~~l~~~~~~-----~~~~~ 139 (383)
T d1gy8a_ 74 EVGDVRNEDFLNGVFTR----HGPIDAVVHMCAFLAV-----GESVRDPLKYYDNNVVGILRLLQAMLLH-----KCDKI 139 (383)
T ss_dssp EESCTTCHHHHHHHHHH----SCCCCEEEECCCCCCH-----HHHHHCHHHHHHHHHHHHHHHHHHHHHT-----TCCEE
T ss_pred EECcccCHHHhhhhhhc----cceeehhhcccccccc-----cccccccccccccccccccccchhhhcc-----CCccc
Confidence 99999999988887754 4579999999997541 1223445677889999999998877543 23456
Q ss_pred EeecCCCCCC-----------------CCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCc
Q 010380 328 FNMDGAGSGG-----------------SSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDL 383 (512)
Q Consensus 328 V~vSS~~a~~-----------------~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~ 383 (512)
+++++..... ....+...|+.||.+.+.+++.+...+ |+.+.++.|+.+--|.
T Consensus 140 ~~~~s~~~~~~~~~~~~~~~~~~~~e~~~~~p~~~Y~~sK~~~e~~~~~~~~~~---gl~~~~lR~~~vyG~~ 209 (383)
T d1gy8a_ 140 IFSSSAAIFGNPTMGSVSTNAEPIDINAKKSPESPYGESKLIAERMIRDCAEAY---GIKGICLRYFNACGAH 209 (383)
T ss_dssp EEEEEGGGTBSCCC-----CCCCBCTTSCCBCSSHHHHHHHHHHHHHHHHHHHH---CCEEEEEEECEEECCC
T ss_pred ccccccccccccccccccccccccccccCCCCCCHHHhhHhHHHHHHHHHHHHh---CCCEEEEecceeeccC
Confidence 6665431111 111235779999999999999988876 6899999998876543
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=1.2e-11 Score=122.17 Aligned_cols=163 Identities=20% Similarity=0.196 Sum_probs=111.7
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChh
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPA 256 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~ 256 (512)
.|.||||||+|-||.+++++|+++|++|+.++|....-.+..... ....++.....|+.+.
T Consensus 1 kKKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~------------------~~~~~~d~~~~~~~~~- 61 (312)
T d2b69a1 1 RKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHW------------------IGHENFELINHDVVEP- 61 (312)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGTGGG------------------TTCTTEEEEECCTTSC-
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCCcCCHHHHHHh------------------cCCCceEEEehHHHHH-
Confidence 378999999999999999999999999999987422110000000 0123344444444322
Q ss_pred hHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCC
Q 010380 257 DVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSG 336 (512)
Q Consensus 257 sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~ 336 (512)
.+..+|+|||+|+.... . . ..++..+.+++|+.|..++++++... +.++|++||....
T Consensus 62 -----------~~~~~d~VihlAa~~~~-~-~---~~~~~~~~~~~Nv~g~~~ll~~~~~~------~~k~I~~SS~~vy 119 (312)
T d2b69a1 62 -----------LYIEVDQIYHLASPASP-P-N---YMYNPIKTLKTNTIGTLNMLGLAKRV------GARLLLASTSEVY 119 (312)
T ss_dssp -----------CCCCCSEEEECCSCCSH-H-H---HTTCHHHHHHHHHHHHHHHHHHHHHH------TCEEEEEEEGGGG
T ss_pred -----------HHcCCCEEEECcccCCc-h-h---HHhCHHHHHHHHHHHHHHHHHHHHHc------CCcEEEEEChhee
Confidence 12369999999996431 1 1 11344678899999999998876542 2378888875211
Q ss_pred C---------------CCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCc
Q 010380 337 G---------------SSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDL 383 (512)
Q Consensus 337 ~---------------~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~ 383 (512)
. .+..+...|+.||.+.+.+++..++++ |+.+..+.|+.|--|.
T Consensus 120 ~~~~~~~~~e~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~~lR~~~vyGp~ 178 (312)
T d2b69a1 120 GDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQE---GVEVRVARIFNTFGPR 178 (312)
T ss_dssp BSCSSSSBCTTCCCBCCSSSTTHHHHHHHHHHHHHHHHHHHHH---CCCEEEEEECCEECTT
T ss_pred cCCCCCCCCccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHh---CCcEEEEEeeeEECCC
Confidence 1 011234679999999999999999886 6999999999998664
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.21 E-value=7e-12 Score=118.84 Aligned_cols=160 Identities=19% Similarity=0.192 Sum_probs=114.1
Q ss_pred ccCCCCCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEE
Q 010380 171 EHCKAGPRNVVITGSTRGLGKALAREFLLSGD--RVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGI 248 (512)
Q Consensus 171 ~~~~l~gk~vLVTGassGIG~aiA~~La~~Ga--~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v 248 (512)
+.+.+++|+||||||||.||.+++++|+++|. +|++++|++..... .....+...
T Consensus 8 ~~~~m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~-----------------------~~~~~i~~~ 64 (232)
T d2bkaa1 8 EDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDE-----------------------EAYKNVNQE 64 (232)
T ss_dssp HHHHHTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCS-----------------------GGGGGCEEE
T ss_pred HHhCCCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcc-----------------------cccceeeee
Confidence 34567889999999999999999999999995 89999997643211 012356667
Q ss_pred EccCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEE
Q 010380 249 ACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIF 328 (512)
Q Consensus 249 ~~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV 328 (512)
.+|+.+.+++.+ .+...|++||++|... .........++|+.++..+.+.+.. . +-.++|
T Consensus 65 ~~D~~~~~~~~~-------~~~~~d~vi~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~a~~----~-~v~~fi 124 (232)
T d2bkaa1 65 VVDFEKLDDYAS-------AFQGHDVGFCCLGTTR--------GKAGAEGFVRVDRDYVLKSAELAKA----G-GCKHFN 124 (232)
T ss_dssp ECCGGGGGGGGG-------GGSSCSEEEECCCCCH--------HHHHHHHHHHHHTHHHHHHHHHHHH----T-TCCEEE
T ss_pred eecccccccccc-------cccccccccccccccc--------cccchhhhhhhcccccceeeecccc----c-Cccccc
Confidence 778877666543 3347899999998642 2234556678899999988887643 2 355799
Q ss_pred eecCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCe-EEEEEeCCcccCCc
Q 010380 329 NMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKV-GVHTASPGMVLTDL 383 (512)
Q Consensus 329 ~vSS~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GI-rVn~V~PG~V~T~~ 383 (512)
++|+... .......|+.+|...+...+. + |. ++..+.||.+-.+.
T Consensus 125 ~~Ss~~~---~~~~~~~Y~~~K~~~E~~l~~----~---~~~~~~IlRP~~i~G~~ 170 (232)
T d2bkaa1 125 LLSSKGA---DKSSNFLYLQVKGEVEAKVEE----L---KFDRYSVFRPGVLLCDR 170 (232)
T ss_dssp EECCTTC---CTTCSSHHHHHHHHHHHHHHT----T---CCSEEEEEECCEEECTT
T ss_pred cCCcccc---ccCccchhHHHHHHhhhcccc----c---cccceEEecCceeecCC
Confidence 9987632 223346799999987765432 2 33 57789999997764
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Probab=99.07 E-value=1.4e-10 Score=114.45 Aligned_cols=168 Identities=13% Similarity=0.142 Sum_probs=117.7
Q ss_pred EEEEECCCChHHHHHHHHHHHCCCEE------EEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 179 NVVITGSTRGLGKALAREFLLSGDRV------VVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 179 ~vLVTGassGIG~aiA~~La~~Ga~V------vl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
.||||||+|-||.+++++|+++|+.| +..+........ ..+.. .....++.++..|.
T Consensus 2 kIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~~~~~~~~--~~~~~---------------~~~~~~~~~~~~d~ 64 (322)
T d1r6da_ 2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNR--ANLAP---------------VDADPRLRFVHGDI 64 (322)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCG--GGGGG---------------GTTCTTEEEEECCT
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeCCCccccH--hHhhh---------------hhcCCCeEEEEecc
Confidence 48999999999999999999999754 333322110000 00000 00235788999999
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
++....... ...+|.+||.|+... .....+..+..+++|+.|+.++.+++... +..++|++||
T Consensus 65 ~~~~~~~~~-------~~~~d~vi~~a~~~~-----~~~~~~~~~~~~~~N~~gt~~ll~~~~~~-----~~~~~I~~Ss 127 (322)
T d1r6da_ 65 RDAGLLARE-------LRGVDAIVHFAAESH-----VDRSIAGASVFTETNVQGTQTLLQCAVDA-----GVGRVVHVST 127 (322)
T ss_dssp TCHHHHHHH-------TTTCCEEEECCSCCC-----HHHHHHCCHHHHHHHTHHHHHHHHHHHHT-----TCCEEEEEEE
T ss_pred ccchhhhcc-------ccccceEEeeccccc-----ccccccchHHHhhhhHHHHHHHHHHHHHc-----CCceEEEeec
Confidence 998866643 237899999998753 12233455677899999999998887542 3457999988
Q ss_pred CCCCC----------CCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCc
Q 010380 333 AGSGG----------SSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDL 383 (512)
Q Consensus 333 ~~a~~----------~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~ 383 (512)
..... .+..+...|+.||.+.+.+.+.++++. |+.+.++.|+.|--|.
T Consensus 128 ~~~yg~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~~lR~~~vyGp~ 185 (322)
T d1r6da_ 128 NQVYGSIDSGSWTESSPLEPNSPYAASKAGSDLVARAYHRTY---GLDVRITRCCNNYGPY 185 (322)
T ss_dssp GGGGCCCSSSCBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH---CCCEEEEEECEEECTT
T ss_pred ceeecCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh---CCCEEEEEeeeEECcC
Confidence 63211 112234689999999999999999886 6999999999887653
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.94 E-value=2.4e-13 Score=123.42 Aligned_cols=46 Identities=33% Similarity=0.444 Sum_probs=41.9
Q ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHH
Q 010380 179 NVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEEN 224 (512)
Q Consensus 179 ~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~ 224 (512)
++.|+||+|+||.++|+.|+++|++|++.+|++++++++.+++...
T Consensus 2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e~~~~l~~~i~~~ 47 (212)
T d1jaya_ 2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRI 47 (212)
T ss_dssp EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHH
T ss_pred EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc
Confidence 3678888899999999999999999999999999999999888764
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=98.90 E-value=5.3e-09 Score=100.94 Aligned_cols=202 Identities=12% Similarity=0.036 Sum_probs=112.2
Q ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhh
Q 010380 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPAD 257 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~s 257 (512)
++||||||||.||.+++++|+++|++|+++.|+.........+..... ....+.++.+|++|.++
T Consensus 4 ~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~---------------~~~~v~~v~~d~~d~~~ 68 (312)
T d1qyda_ 4 SRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYF---------------KQLGAKLIEASLDDHQR 68 (312)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHH---------------HTTTCEEECCCSSCHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccchhHHHHHhhh---------------ccCCcEEEEeecccchh
Confidence 458999999999999999999999999999997543221111111111 12457889999999988
Q ss_pred HHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCCC
Q 010380 258 VQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGG 337 (512)
Q Consensus 258 v~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~~ 337 (512)
+.+.+. ..+.++++++.... ..|..+...+..++. +. ...++++.||.+...
T Consensus 69 ~~~~~~-------~~~~~~~~~~~~~~----------------~~~~~~~~~~l~~a~----~~-~~~~~v~~Ss~g~~~ 120 (312)
T d1qyda_ 69 LVDALK-------QVDVVISALAGGVL----------------SHHILEQLKLVEAIK----EA-GNIKRFLPSEFGMDP 120 (312)
T ss_dssp HHHHHT-------TCSEEEECCCCSSS----------------STTTTTHHHHHHHHH----HS-CCCSEEECSCCSSCT
T ss_pred hhhhcc-------Ccchhhhhhhhccc----------------ccchhhhhHHHHHHH----Hh-cCCcEEEEeeccccC
Confidence 776554 57888888875331 124444444444432 22 344666666653222
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCc------chhhhh-------hhhhhcCCHH
Q 010380 338 SSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGS------TIQNKQ-------MFNIICELPE 404 (512)
Q Consensus 338 ~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~------~~~~~~-------~~~~~~~~pe 404 (512)
........|..++.......+....+ .++.+..+.||.+--+...... ....+. -........+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~r~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~ 197 (312)
T d1qyda_ 121 DIMEHALQPGSITFIDKRKVRRAIEA---ASIPYTYVSSNMFAGYFAGSLAQLDGHMMPPRDKVLIYGDGNVKGIWVDED 197 (312)
T ss_dssp TSCCCCCSSTTHHHHHHHHHHHHHHH---TTCCBCEEECCEEHHHHTTTSSCTTCCSSCCSSEECCBTTSCSEEEEECHH
T ss_pred CCcccccchhhhhhHHHHHHHHhhcc---cccceEEeccceeecCCccchhhHHHHhhhcccccccccccccccceeeHH
Confidence 22222222333333333333333333 3677788888877532211100 000000 0011122578
Q ss_pred HHHHHhccccccchhhhhhhh
Q 010380 405 TVARTLVPRIRVVKGSGKAIN 425 (512)
Q Consensus 405 ~vA~~~l~r~~~~~~va~~v~ 425 (512)
++|+.++..+..++..++.+.
T Consensus 198 Dva~a~~~~l~~~~~~~~~~~ 218 (312)
T d1qyda_ 198 DVGTYTIKSIDDPQTLNKTMY 218 (312)
T ss_dssp HHHHHHHHHTTCGGGSSSEEE
T ss_pred HHHHHHHHHhcCccccCceEE
Confidence 888888777766665555443
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.84 E-value=1.9e-09 Score=99.78 Aligned_cols=150 Identities=19% Similarity=0.238 Sum_probs=100.6
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGD--RVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga--~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
++|+|+||||||-||.+++++|+++|+ +|+...|++.. ...+ +..+..
T Consensus 1 t~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~---------------------------~~~~---~~~~~~ 50 (212)
T d2a35a1 1 TPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA---------------------------EHPR---LDNPVG 50 (212)
T ss_dssp CCCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC---------------------------CCTT---EECCBS
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchh---------------------------hccc---cccccc
Confidence 368999999999999999999999997 67777775421 0112 234444
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
|..++. + ...+.+|.+|+++|.... ....-+...++|+.++..+++++.. . +-.+++++||.
T Consensus 51 d~~~~~---~---~~~~~~d~vi~~~g~~~~-------~~~~~~~~~~~~~~~~~~~~~~a~~----~-~v~~~i~~Ss~ 112 (212)
T d2a35a1 51 PLAELL---P---QLDGSIDTAFCCLGTTIK-------EAGSEEAFRAVDFDLPLAVGKRALE----M-GARHYLVVSAL 112 (212)
T ss_dssp CHHHHG---G---GCCSCCSEEEECCCCCHH-------HHSSHHHHHHHHTHHHHHHHHHHHH----T-TCCEEEEECCT
T ss_pred chhhhh---h---ccccchheeeeeeeeecc-------ccccccccccchhhhhhhccccccc----c-ccccccccccc
Confidence 443321 1 223568999999986431 1112356778899999888887633 2 45689999876
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCe-EEEEEeCCcccCCc
Q 010380 334 GSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKV-GVHTASPGMVLTDL 383 (512)
Q Consensus 334 ~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GI-rVn~V~PG~V~T~~ 383 (512)
++. ......|..+|...+...+ ..+. +...+.|+.|--+.
T Consensus 113 ~~~---~~~~~~y~~~K~~~E~~l~-------~~~~~~~~I~Rp~~v~G~~ 153 (212)
T d2a35a1 113 GAD---AKSSIFYNRVKGELEQALQ-------EQGWPQLTIARPSLLFGPR 153 (212)
T ss_dssp TCC---TTCSSHHHHHHHHHHHHHT-------TSCCSEEEEEECCSEESTT
T ss_pred ccc---cccccchhHHHHHHhhhcc-------ccccccceeeCCcceeCCc
Confidence 432 2345679999988775443 2233 67889999987553
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=98.75 E-value=2.8e-08 Score=94.71 Aligned_cols=143 Identities=17% Similarity=0.187 Sum_probs=100.7
Q ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhhH
Q 010380 179 NVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPADV 258 (512)
Q Consensus 179 ~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~sv 258 (512)
.||||||||.||.+++++|.++|++|+.++|+. +|++|.+++
T Consensus 3 KIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~--------------------------------------~D~~d~~~~ 44 (281)
T d1vl0a_ 3 KILITGANGQLGREIQKQLKGKNVEVIPTDVQD--------------------------------------LDITNVLAV 44 (281)
T ss_dssp EEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT--------------------------------------CCTTCHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCEEEEeechh--------------------------------------ccCCCHHHH
Confidence 389999999999999999999999999988741 389999999
Q ss_pred HHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCCC-
Q 010380 259 QKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGG- 337 (512)
Q Consensus 259 ~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~~- 337 (512)
+++++.. .+|++||+|+.... +......+..+..|+.....+....... ...+++.||.....
T Consensus 45 ~~~l~~~-----~~d~vih~a~~~~~-----~~~~~~~~~~~~~n~~~~~~~~~~~~~~------~~~~~~~ss~~v~~~ 108 (281)
T d1vl0a_ 45 NKFFNEK-----KPNVVINCAAHTAV-----DKCEEQYDLAYKINAIGPKNLAAAAYSV------GAEIVQISTDYVFDG 108 (281)
T ss_dssp HHHHHHH-----CCSEEEECCCCCCH-----HHHHHCHHHHHHHHTHHHHHHHHHHHHH------TCEEEEEEEGGGSCS
T ss_pred HHHHHHc-----CCCEEEeecccccc-----ccccccchhhcccccccccccccccccc------cccccccccceeeec
Confidence 8887754 68999999987531 1223344667778888877776665443 23455555431111
Q ss_pred ---------CCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCC
Q 010380 338 ---------SSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTD 382 (512)
Q Consensus 338 ---------~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~ 382 (512)
.+......|+.+|...+.+.+. . +.....+.|+.|--+
T Consensus 109 ~~~~~~~e~~~~~~~~~~~~~k~~~e~~~~~----~---~~~~~i~R~~~vyG~ 155 (281)
T d1vl0a_ 109 EAKEPITEFDEVNPQSAYGKTKLEGENFVKA----L---NPKYYIVRTAWLYGD 155 (281)
T ss_dssp CCSSCBCTTSCCCCCSHHHHHHHHHHHHHHH----H---CSSEEEEEECSEESS
T ss_pred cccccccccccccchhhhhhhhhHHHHHHHH----h---CCCccccceeEEeCC
Confidence 1223456799999887766543 2 456778999988654
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Probab=98.74 E-value=9.9e-09 Score=98.42 Aligned_cols=129 Identities=19% Similarity=0.184 Sum_probs=90.0
Q ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhhH
Q 010380 179 NVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPADV 258 (512)
Q Consensus 179 ~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~sv 258 (512)
.||||||+|-||.+++++|.++|..| .++++... +.+|++|.+.+
T Consensus 2 KILItG~tGfiG~~l~~~L~~~g~~v-~~~~~~~~----------------------------------~~~Dl~~~~~~ 46 (298)
T d1n2sa_ 2 NILLFGKTGQVGWELQRSLAPVGNLI-ALDVHSKE----------------------------------FCGDFSNPKGV 46 (298)
T ss_dssp EEEEECTTSHHHHHHHHHTTTTSEEE-EECTTCSS----------------------------------SCCCTTCHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCEE-EEECCCcc----------------------------------ccCcCCCHHHH
Confidence 48999999999999999999998644 44443221 34699999999
Q ss_pred HHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCC
Q 010380 259 QKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSGGS 338 (512)
Q Consensus 259 ~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~~~ 338 (512)
+++++.. .+|+|||+||.... . .+.+.-+..+++|+.+...+.+++.. .+.+++++||......
T Consensus 47 ~~~i~~~-----~~D~Vih~Aa~~~~-~----~~~~~~~~~~~~n~~~~~~l~~~~~~------~~~~~~~~ss~~~~~~ 110 (298)
T d1n2sa_ 47 AETVRKL-----RPDVIVNAAAHTAV-D----KAESEPELAQLLNATSVEAIAKAANE------TGAWVVHYSTDYVFPG 110 (298)
T ss_dssp HHHHHHH-----CCSEEEECCCCCCH-H----HHTTCHHHHHHHHTHHHHHHHHHHTT------TTCEEEEEEEGGGSCC
T ss_pred HHHHHHc-----CCCEEEEecccccc-c----ccccCccccccccccccccchhhhhc------cccccccccccccccC
Confidence 9888765 68999999997541 1 11233467789999999888777632 3456777776522111
Q ss_pred ----------CCCCcchhhHHHHHHHHHHH
Q 010380 339 ----------STPLTAVYGSTKCGLRQLQA 358 (512)
Q Consensus 339 ----------~~p~~~~Y~aSKaAl~~l~~ 358 (512)
+..+...|+.+|.+.+.+.+
T Consensus 111 ~~~~~~~E~~~~~p~~~y~~~k~~~e~~~~ 140 (298)
T d1n2sa_ 111 TGDIPWQETDATSPLNVYGKTKLAGEKALQ 140 (298)
T ss_dssp CTTCCBCTTSCCCCSSHHHHHHHHHHHHHH
T ss_pred CCCCCCccccccCCCchHhhhhhhhhhhHH
Confidence 11234679999988776554
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=98.74 E-value=5.7e-08 Score=92.57 Aligned_cols=196 Identities=12% Similarity=0.095 Sum_probs=111.8
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHH--HHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMT--VTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~--~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
+.|.||||||||.||.+++++|+++|++|++++|+....... ...+... ....+.++.+|+.
T Consensus 2 ~kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~d~~ 65 (307)
T d1qyca_ 2 SRSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESF----------------KASGANIVHGSID 65 (307)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHH----------------HTTTCEEECCCTT
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCccccchhHHHHHHhh----------------ccCCcEEEEeecc
Confidence 357799999999999999999999999999999975442211 1122111 1245677899999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGA 333 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~ 333 (512)
+.....+.++ ..|.+|++++... ..+...+.+++... ....+++.||.
T Consensus 66 ~~~~~~~~~~-------~~~~vi~~~~~~~--------------------~~~~~~~~~a~~~~-----~~~~~~~~s~~ 113 (307)
T d1qyca_ 66 DHASLVEAVK-------NVDVVISTVGSLQ--------------------IESQVNIIKAIKEV-----GTVKRFFPSEF 113 (307)
T ss_dssp CHHHHHHHHH-------TCSEEEECCCGGG--------------------SGGGHHHHHHHHHH-----CCCSEEECSCC
T ss_pred cchhhhhhhh-------hceeeeecccccc--------------------cchhhHHHHHHHHh-----ccccceeeecc
Confidence 9987776654 5788888887532 22223333333322 23456676665
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccCCc----chhh-h-------hhhhhhcC
Q 010380 334 GSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTDLLLSGS----TIQN-K-------QMFNIICE 401 (512)
Q Consensus 334 ~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~~~~~~~----~~~~-~-------~~~~~~~~ 401 (512)
+ ..........+...+............+. |+....+.|+.+-.+...... .... . ........
T Consensus 114 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~r~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 189 (307)
T d1qyca_ 114 G-NDVDNVHAVEPAKSVFEVKAKVRRAIEAE---GIPYTYVSSNCFAGYFLRSLAQAGLTAPPRDKVVILGDGNARVVFV 189 (307)
T ss_dssp S-SCTTSCCCCTTHHHHHHHHHHHHHHHHHH---TCCBEEEECCEEHHHHTTTTTCTTCSSCCSSEEEEETTSCCEEEEE
T ss_pred c-cccccccccccccccccccccccchhhcc---CCCceecccceecCCCccchhhhhhhhhhcccceeeecccccccCC
Confidence 2 22222223333444433333333333333 677788888877543211100 0000 0 00001112
Q ss_pred CHHHHHHHhccccccchhhhhh
Q 010380 402 LPETVARTLVPRIRVVKGSGKA 423 (512)
Q Consensus 402 ~pe~vA~~~l~r~~~~~~va~~ 423 (512)
..+++|+.++..+..++...+.
T Consensus 190 ~v~Dva~~~~~~l~~~~~~~~~ 211 (307)
T d1qyca_ 190 KEEDIGTFTIKAVDDPRTLNKT 211 (307)
T ss_dssp CHHHHHHHHHTTSSCGGGTTEE
T ss_pred cHHHHHHHHHHHhcChhhcCce
Confidence 5788888888777766654444
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=98.59 E-value=2.7e-07 Score=91.31 Aligned_cols=152 Identities=11% Similarity=0.022 Sum_probs=94.0
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCCh
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEP 255 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~ 255 (512)
+.|+|+||||||.||.+++++|+++|++|+++.|+..+... .++. ....+..+.+|++|.
T Consensus 2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~~~--~~~~------------------~~~~v~~~~gD~~d~ 61 (350)
T d1xgka_ 2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIA--EELQ------------------AIPNVTLFQGPLLNN 61 (350)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHH--HHHH------------------TSTTEEEEESCCTTC
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchhhh--hhhc------------------ccCCCEEEEeeCCCc
Confidence 46899999999999999999999999999999998776432 2221 124578899999997
Q ss_pred hhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCC
Q 010380 256 ADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGS 335 (512)
Q Consensus 256 ~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a 335 (512)
.++.+ ..+...|.++.+..... . .|+....+++.++. +. +..+++..||...
T Consensus 62 ~~~~~------~a~~~~~~~~~~~~~~~-------~----------~~~~~~~~~~~aa~----~a-gv~~~v~~Ss~~~ 113 (350)
T d1xgka_ 62 VPLMD------TLFEGAHLAFINTTSQA-------G----------DEIAIGKDLADAAK----RA-GTIQHYIYSSMPD 113 (350)
T ss_dssp HHHHH------HHHTTCSEEEECCCSTT-------S----------CHHHHHHHHHHHHH----HH-SCCSEEEEEECCC
T ss_pred HHHHH------HHhcCCceEEeeccccc-------c----------hhhhhhhHHHHHHH----Hh-CCCceEEEeeccc
Confidence 65322 12245676665543211 0 12222333444432 22 2345666766522
Q ss_pred C-CCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCC
Q 010380 336 G-GSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTD 382 (512)
Q Consensus 336 ~-~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~ 382 (512)
. ..+......|..+|...+.+.+. .++....+.||.+..+
T Consensus 114 ~~~~~~~~~~~~~~~k~~~~~~~~~-------~~~~~~~vr~~~~~~~ 154 (350)
T d1xgka_ 114 HSLYGPWPAVPMWAPKFTVENYVRQ-------LGLPSTFVYAGIYNNN 154 (350)
T ss_dssp GGGTSSCCCCTTTHHHHHHHHHHHT-------SSSCEEEEEECEEGGG
T ss_pred cccCCcccchhhhhhHHHHHHHHHh-------hccCceeeeeceeecc
Confidence 1 22233345677888776654432 3567778888876554
|
| >d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: ADP-L-glycero-D-mannoheptose 6-epimerase species: Escherichia coli [TaxId: 562]
Probab=98.47 E-value=2.8e-07 Score=88.25 Aligned_cols=159 Identities=13% Similarity=0.145 Sum_probs=97.1
Q ss_pred EEEECCCChHHHHHHHHHHHCCC-EEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhhH
Q 010380 180 VVITGSTRGLGKALAREFLLSGD-RVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPADV 258 (512)
Q Consensus 180 vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~sv 258 (512)
||||||+|-||..++++|+++|+ .|+.+++-....+ . ..+. ..++.+..+.
T Consensus 2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d~~~~~~~-~-~~~~--------------------------~~~~~~~~~~ 53 (307)
T d1eq2a_ 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK-F-VNLV--------------------------DLNIADYMDK 53 (307)
T ss_dssp EEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGG-G-HHHH--------------------------TSCCSEEEEH
T ss_pred EEEecCccHHHHHHHHHHHhCCCCeEEEEECCCCcch-h-hccc--------------------------ccchhhhccc
Confidence 79999999999999999999997 5777753222110 0 0110 1123332233
Q ss_pred HHHHHHHHH--HcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecCCCCC
Q 010380 259 QKLSNFAVN--EFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDGAGSG 336 (512)
Q Consensus 259 ~~~~~~i~~--~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS~~a~ 336 (512)
....+.... .+..+++++|.|+.... .. ...+...+.|+.+...+.+.....- . .+++.||....
T Consensus 54 ~~~~~~~~~~~~~~~~~~i~~~aa~~~~----~~---~~~~~~~~~~~~~~~~~l~~~~~~~-----i-~~v~~ss~~~~ 120 (307)
T d1eq2a_ 54 EDFLIQIMAGEEFGDVEAIFHEGACSST----TE---WDGKYMMDNNYQYSKELLHYCLERE-----I-PFLYASSAATY 120 (307)
T ss_dssp HHHHHHHHTTCCCSSCCEEEECCSCCCT----TC---CCHHHHHHHTHHHHHHHHHHHHHHT-----C-CEEEEEEGGGG
T ss_pred hHHHHHHhhhhcccchhhhhhhcccccc----cc---ccccccccccccccccccccccccc-----c-ccccccccccc
Confidence 333333332 34567888888875431 11 2335567778888887777654431 2 34444443222
Q ss_pred CCC----------CCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCC
Q 010380 337 GSS----------TPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTASPGMVLTD 382 (512)
Q Consensus 337 ~~~----------~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~PG~V~T~ 382 (512)
..+ .+....|+.+|.+.+.+.+.+..+. ++.+..+.|..+--|
T Consensus 121 ~~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~---~~~~~~~r~~~vyGp 173 (307)
T d1eq2a_ 121 GGRTSDFIESREYEKPLNVYGYSKFLFDEYVRQILPEA---NSQIVGFRYFNVYGP 173 (307)
T ss_dssp TTCCSCBCSSGGGCCCSSHHHHHHHHHHHHHHHHGGGC---SSCEEEEEECEEESS
T ss_pred ccccccccccccccccccccccccchhhhhcccccccc---ccccccccceeEeec
Confidence 211 2345689999999999998887665 577788888777655
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=97.58 E-value=0.00023 Score=63.57 Aligned_cols=88 Identities=15% Similarity=0.203 Sum_probs=65.0
Q ss_pred cCCCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEc
Q 010380 172 HCKAGPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIAC 250 (512)
Q Consensus 172 ~~~l~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~ 250 (512)
..++++|+|+|.|+ ||.|++++..|++.|. +++++.|+.+.++.+....++ +.. .........
T Consensus 13 ~~~l~~k~vlIlGa-GGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~-~~~--------------~~~~~~~~~ 76 (182)
T d1vi2a1 13 GFDIKGKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQR-VNE--------------NTDCVVTVT 76 (182)
T ss_dssp TCCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHH-HHH--------------HSSCEEEEE
T ss_pred CCCcCCCEEEEECC-cHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHH-HHh--------------hcCcceEee
Confidence 35789999999998 7999999999999997 799999998877665543322 111 122345677
Q ss_pred cCCChhhHHHHHHHHHHHcCCCcccccccccC
Q 010380 251 DVCEPADVQKLSNFAVNEFGSIDIWINNAGTN 282 (512)
Q Consensus 251 Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~ 282 (512)
|+.+.+++..... ..|++||+..+.
T Consensus 77 ~~~~~~~~~~~~~-------~~diiIN~Tp~G 101 (182)
T d1vi2a1 77 DLADQQAFAEALA-------SADILTNGTKVG 101 (182)
T ss_dssp ETTCHHHHHHHHH-------TCSEEEECSSTT
T ss_pred ecccccchhhhhc-------ccceeccccCCc
Confidence 8888877655433 689999998764
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=97.57 E-value=3.4e-05 Score=69.04 Aligned_cols=80 Identities=19% Similarity=0.273 Sum_probs=57.3
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCCh
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEP 255 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~ 255 (512)
+|++|+|+||++|+|.+.++-....|++|+.+++++++.+.+ ++ .+... ..|-.++
T Consensus 29 ~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~----~~-----------------~Ga~~---vi~~~~~ 84 (182)
T d1v3va2 29 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYL----KQ-----------------IGFDA---AFNYKTV 84 (182)
T ss_dssp SSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH----HH-----------------TTCSE---EEETTSC
T ss_pred CCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHH----Hh-----------------hhhhh---hcccccc
Confidence 589999999999999999999999999999999998765432 22 12222 2355555
Q ss_pred hhHHHHHHHHHHHcCCCccccccccc
Q 010380 256 ADVQKLSNFAVNEFGSIDIWINNAGT 281 (512)
Q Consensus 256 ~sv~~~~~~i~~~~g~IDvLInnAG~ 281 (512)
+..+...+.. ....+|+++++.|.
T Consensus 85 ~~~~~~~~~~--~~~Gvd~v~D~vG~ 108 (182)
T d1v3va2 85 NSLEEALKKA--SPDGYDCYFDNVGG 108 (182)
T ss_dssp SCHHHHHHHH--CTTCEEEEEESSCH
T ss_pred cHHHHHHHHh--hcCCCceeEEecCc
Confidence 5555544432 22469999999873
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.49 E-value=0.00015 Score=64.17 Aligned_cols=79 Identities=18% Similarity=0.244 Sum_probs=55.1
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCCh
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEP 255 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~ 255 (512)
+|++|+|+||++++|...++.+...|++|+++++++++.+.+. + .|..- ..|.++.
T Consensus 28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~-~--------------------~Ga~~---vi~~~~~ 83 (174)
T d1yb5a2 28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVL-Q--------------------NGAHE---VFNHREV 83 (174)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH-H--------------------TTCSE---EEETTST
T ss_pred CCCEEEEEeccccccccccccccccCccccccccccccccccc-c--------------------cCccc---ccccccc
Confidence 5889999999999999999999999999999999877654332 2 12221 2366665
Q ss_pred hhHHHHHHHHHHHcCCCcccccccc
Q 010380 256 ADVQKLSNFAVNEFGSIDIWINNAG 280 (512)
Q Consensus 256 ~sv~~~~~~i~~~~g~IDvLInnAG 280 (512)
+-.+++.+... -..+|+++.+.|
T Consensus 84 ~~~~~i~~~t~--~~g~d~v~d~~g 106 (174)
T d1yb5a2 84 NYIDKIKKYVG--EKGIDIIIEMLA 106 (174)
T ss_dssp THHHHHHHHHC--TTCEEEEEESCH
T ss_pred cHHHHhhhhhc--cCCceEEeeccc
Confidence 54443333221 135899998877
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=97.37 E-value=0.00012 Score=64.94 Aligned_cols=80 Identities=10% Similarity=0.124 Sum_probs=57.1
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCCh
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEP 255 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~ 255 (512)
.|++|+|+||++|+|...++-....|++|+.+++++++.+.+. ++ |.. ...|.+++
T Consensus 28 ~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~-~l--------------------Ga~---~vi~~~~~ 83 (179)
T d1qora2 28 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSAL-KA--------------------GAW---QVINYREE 83 (179)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHH-HH--------------------TCS---EEEETTTS
T ss_pred CCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHH-hc--------------------CCe---EEEECCCC
Confidence 4789999999999999999999999999999999998875432 22 222 23476665
Q ss_pred hhHHHHHHHHHHHcCCCccccccccc
Q 010380 256 ADVQKLSNFAVNEFGSIDIWINNAGT 281 (512)
Q Consensus 256 ~sv~~~~~~i~~~~g~IDvLInnAG~ 281 (512)
+-.+++.+ +. .-..+|+++.+.|.
T Consensus 84 d~~~~v~~-~t-~g~g~d~v~d~~g~ 107 (179)
T d1qora2 84 DLVERLKE-IT-GGKKVRVVYDSVGR 107 (179)
T ss_dssp CHHHHHHH-HT-TTCCEEEEEECSCG
T ss_pred CHHHHHHH-Hh-CCCCeEEEEeCccH
Confidence 54444322 21 12358999998874
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=97.31 E-value=0.00052 Score=60.08 Aligned_cols=47 Identities=26% Similarity=0.414 Sum_probs=41.6
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcChhhHHHHHHHH
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRSSESVRMTVTEL 221 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~~~l~~~~~el 221 (512)
+++++.++|.|+ |++|..+++.|..+|+ +|.++.|+.++++++.+++
T Consensus 21 ~l~~~~ilviGa-G~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~ 68 (159)
T d1gpja2 21 SLHDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDL 68 (159)
T ss_dssp CCTTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHH
T ss_pred CcccCeEEEECC-CHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhh
Confidence 678999999998 9999999999999998 6999999988887666553
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.24 E-value=0.00024 Score=63.37 Aligned_cols=43 Identities=19% Similarity=0.236 Sum_probs=38.1
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHH
Q 010380 175 AGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMT 217 (512)
Q Consensus 175 l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~ 217 (512)
..|++|||+||+||.|...++-....|++|+.+++++++.+.+
T Consensus 30 ~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~ 72 (176)
T d1xa0a2 30 PERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYL 72 (176)
T ss_dssp GGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHH
T ss_pred CCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHH
Confidence 3578999999999999999999989999999999998886543
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=97.19 E-value=0.00045 Score=61.86 Aligned_cols=87 Identities=17% Similarity=0.125 Sum_probs=57.3
Q ss_pred CC-EEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCCh
Q 010380 177 PR-NVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEP 255 (512)
Q Consensus 177 gk-~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~ 255 (512)
|+ +++++||+||+|.+.++-....|++|+.+.|+.++.++..+.+++. +.... +.-|-.+.
T Consensus 29 g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~l-----------------Gad~v-i~~~~~~~ 90 (189)
T d1gu7a2 29 GKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKEL-----------------GATQV-ITEDQNNS 90 (189)
T ss_dssp TTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHH-----------------TCSEE-EEHHHHHC
T ss_pred CCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhc-----------------cccEE-Eeccccch
Confidence 44 4555799999999999988889999999999888777766666552 22221 22222222
Q ss_pred hhHHHHHHHHHH-HcCCCccccccccc
Q 010380 256 ADVQKLSNFAVN-EFGSIDIWINNAGT 281 (512)
Q Consensus 256 ~sv~~~~~~i~~-~~g~IDvLInnAG~ 281 (512)
.++...+.++.+ ..+++|+++++.|.
T Consensus 91 ~~~~~~v~~~~~~~g~~vdvv~D~vg~ 117 (189)
T d1gu7a2 91 REFGPTIKEWIKQSGGEAKLALNCVGG 117 (189)
T ss_dssp GGGHHHHHHHHHHHTCCEEEEEESSCH
T ss_pred hHHHHHHHHHHhhccCCceEEEECCCc
Confidence 334444444443 34579999998773
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=97.18 E-value=0.00038 Score=60.63 Aligned_cols=43 Identities=26% Similarity=0.277 Sum_probs=38.2
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHH
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVT 219 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~ 219 (512)
..|+|+|.|| |.+|+.+|+.|+++|++|++++|+.++++++.+
T Consensus 1 ~~K~IliiGa-G~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~ 43 (182)
T d1e5qa1 1 ATKSVLMLGS-GFVTRPTLDVLTDSGIKVTVACRTLESAKKLSA 43 (182)
T ss_dssp CCCEEEEECC-STTHHHHHHHHHTTTCEEEEEESCHHHHHHHHT
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEECChHHHHHHHh
Confidence 3688999987 999999999999999999999999998876544
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=97.17 E-value=0.00063 Score=59.47 Aligned_cols=82 Identities=17% Similarity=0.207 Sum_probs=56.9
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCCh
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEP 255 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~ 255 (512)
.|.+++|+| +|++|...++.+...|++|+++++++++++.+.+ .+.... +..|- ..
T Consensus 26 ~g~~vlV~G-~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~---------------------~ga~~~-~~~~~-~~ 81 (170)
T d1e3ja2 26 LGTTVLVIG-AGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKN---------------------CGADVT-LVVDP-AK 81 (170)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH---------------------TTCSEE-EECCT-TT
T ss_pred CCCEEEEEc-ccccchhhHhhHhhhcccccccchHHHHHHHHHH---------------------cCCcEE-Eeccc-cc
Confidence 567899997 6899999999999999999999999988754322 122221 22232 22
Q ss_pred hhHHHHHHHHHHHcC-CCccccccccc
Q 010380 256 ADVQKLSNFAVNEFG-SIDIWINNAGT 281 (512)
Q Consensus 256 ~sv~~~~~~i~~~~g-~IDvLInnAG~ 281 (512)
++.....+.+.+..| .+|++|.++|.
T Consensus 82 ~~~~~~~~~~~~~~g~g~D~vid~~g~ 108 (170)
T d1e3ja2 82 EEESSIIERIRSAIGDLPNVTIDCSGN 108 (170)
T ss_dssp SCHHHHHHHHHHHSSSCCSEEEECSCC
T ss_pred cccchhhhhhhcccccCCceeeecCCC
Confidence 344555555655554 58999999985
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.13 E-value=0.00014 Score=64.63 Aligned_cols=40 Identities=23% Similarity=0.276 Sum_probs=36.1
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHH
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVR 215 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~ 215 (512)
+|++|+|+||+|++|...++.+...|++|+++++++++.+
T Consensus 25 ~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~ 64 (183)
T d1pqwa_ 25 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKRE 64 (183)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHH
T ss_pred CCCEEEEECCCCCcccccchhhccccccceeeeccccccc
Confidence 4789999999999999999999999999999999877654
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=97.06 E-value=0.0026 Score=54.61 Aligned_cols=116 Identities=18% Similarity=0.234 Sum_probs=71.3
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCC--CEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSG--DRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~G--a~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
+.+.+.|.|+ |.+|..+|..|+.+| .+|+++++++++++....++...... .+ .......|
T Consensus 4 ~~~KI~IIGa-G~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~-------------~~-~~~~~~~d-- 66 (146)
T d1ez4a1 4 NHQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAF-------------TA-PKKIYSGE-- 66 (146)
T ss_dssp TBCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGG-------------SC-CCEEEECC--
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccc-------------cC-CceEeecc--
Confidence 4567888896 999999999999988 48999999998877666666442111 11 22333434
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeec
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD 331 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vS 331 (512)
+++ ...-|++|.+||... .+ . +.-...+..|. .+.+...+.+.+....+.++++|
T Consensus 67 -~~~-----------~~~adivvitag~~~--~~--g---~~r~~l~~~N~----~i~~~~~~~i~~~~p~aivivvt 121 (146)
T d1ez4a1 67 -YSD-----------CKDADLVVITAGAPQ--KP--G---ESRLDLVNKNL----NILSSIVKPVVDSGFDGIFLVAA 121 (146)
T ss_dssp -GGG-----------GTTCSEEEECCCC-----------------CHHHHH----HHHHHHHHHHHHTTCCSEEEECS
T ss_pred -HHH-----------hccccEEEEeccccc--CC--C---CCHHHHHHHHH----HHHHHHHHHHhhcCCCcEEEEeC
Confidence 322 235799999999754 11 1 12233444554 45566667677665667777764
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=96.98 E-value=0.0026 Score=54.68 Aligned_cols=119 Identities=15% Similarity=0.180 Sum_probs=73.9
Q ss_pred CEEEEECCCChHHHHHHHHHHHCC--CEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCCh
Q 010380 178 RNVVITGSTRGLGKALAREFLLSG--DRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEP 255 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~G--a~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~ 255 (512)
|.+.|.|+ |.+|..+|..|+.+| .++++.++++++++....++.+.... ..........| .
T Consensus 2 kKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~-------------~~~~~~~~~~d---~ 64 (146)
T d1hyha1 2 RKIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMAN-------------LEAHGNIVIND---W 64 (146)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGG-------------SSSCCEEEESC---G
T ss_pred CeEEEECc-CHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccc-------------cCCccceeccC---H
Confidence 66778895 999999999999988 38999999999887776667653221 12222323333 3
Q ss_pred hhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeec
Q 010380 256 ADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD 331 (512)
Q Consensus 256 ~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vS 331 (512)
+++ ..-|++|.+||.... ..+-..++-...++.| ..+.+...+.+.+....+.++++|
T Consensus 65 ~~l-----------~~adiVVitaG~~~~---~~~~~g~~R~~l~~~N----~~i~~~i~~~i~~~~p~aivivvt 122 (146)
T d1hyha1 65 AAL-----------ADADVVISTLGNIKL---QQDNPTGDRFAELKFT----SSMVQSVGTNLKESGFHGVLVVIS 122 (146)
T ss_dssp GGG-----------TTCSEEEECCSCGGG---TC-------CTTHHHH----HHHHHHHHHHHHHTTCCSEEEECS
T ss_pred HHh-----------ccccEEEEecccccc---ccccCCccHHHHHHHH----HHHHHHHHHHHhhcCCCeEEEEec
Confidence 322 257999999997431 1111111112233444 356677777777776667777775
|
| >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=96.94 E-value=0.00064 Score=52.14 Aligned_cols=42 Identities=21% Similarity=0.301 Sum_probs=37.6
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHH
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMT 217 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~ 217 (512)
++.+++|+||++|+|....+.+...|++|+.+.+++++.+.+
T Consensus 31 ~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k~~~~ 72 (77)
T d1o8ca2 31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYL 72 (77)
T ss_dssp GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHH
T ss_pred CCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHHHHHH
Confidence 578899999999999999998889999999999998887543
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=96.92 E-value=0.0015 Score=57.62 Aligned_cols=79 Identities=16% Similarity=0.272 Sum_probs=58.6
Q ss_pred cCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEcc
Q 010380 172 HCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACD 251 (512)
Q Consensus 172 ~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~D 251 (512)
..++++|+|+|-|+ ||.+++++..|.+.+.+|+++.|+.++++...+.+.. ...+..+..|
T Consensus 13 ~~~~~~k~vlIlGa-GGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~------------------~~~~~~~~~~ 73 (171)
T d1p77a1 13 NWLRPNQHVLILGA-GGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQP------------------YGNIQAVSMD 73 (171)
T ss_dssp TCCCTTCEEEEECC-SHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGG------------------GSCEEEEEGG
T ss_pred CCCCCCCEEEEECC-cHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhh------------------ccccchhhhc
Confidence 35678999999986 8899999999999888999999999998887776643 1234444444
Q ss_pred CCChhhHHHHHHHHHHHcCCCcccccccccCC
Q 010380 252 VCEPADVQKLSNFAVNEFGSIDIWINNAGTNK 283 (512)
Q Consensus 252 ltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~ 283 (512)
-. .....|++||+.....
T Consensus 74 ~~--------------~~~~~diiIN~tp~g~ 91 (171)
T d1p77a1 74 SI--------------PLQTYDLVINATSAGL 91 (171)
T ss_dssp GC--------------CCSCCSEEEECCCC--
T ss_pred cc--------------cccccceeeecccccc
Confidence 21 1246899999987653
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=96.91 E-value=0.001 Score=58.56 Aligned_cols=50 Identities=10% Similarity=0.134 Sum_probs=43.8
Q ss_pred cCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHH
Q 010380 172 HCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELE 222 (512)
Q Consensus 172 ~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~ 222 (512)
..+++||.|+|-|+ ||-+++++..|.+.|.+|+++.|+.++.+++.+.+.
T Consensus 13 ~~~~~~k~vlIlGa-GGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~~ 62 (170)
T d1nyta1 13 SFIRPGLRILLIGA-GGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFA 62 (170)
T ss_dssp TCCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTG
T ss_pred CCCCCCCEEEEECC-cHHHHHHHHHhcccceEEEeccchHHHHHHHHHHHh
Confidence 45778999999997 899999999999999999999999998887666553
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.90 E-value=0.0011 Score=55.69 Aligned_cols=60 Identities=17% Similarity=0.261 Sum_probs=48.8
Q ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhhH
Q 010380 179 NVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPADV 258 (512)
Q Consensus 179 ~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~sv 258 (512)
.|+|.|+ |-+|+.+|+.|.++|+.|++++.+++..+.+.++ ..+.++..|.+|++.+
T Consensus 2 ~IvI~G~-G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~----------------------~~~~vi~Gd~~~~~~l 58 (132)
T d1lssa_ 2 YIIIAGI-GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAE----------------------IDALVINGDCTKIKTL 58 (132)
T ss_dssp EEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----------------------CSSEEEESCTTSHHHH
T ss_pred EEEEECC-CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhh----------------------hhhhhccCcccchhhh
Confidence 5789998 9999999999999999999999999877654332 1345688999998876
Q ss_pred HHH
Q 010380 259 QKL 261 (512)
Q Consensus 259 ~~~ 261 (512)
+++
T Consensus 59 ~~~ 61 (132)
T d1lssa_ 59 EDA 61 (132)
T ss_dssp HHT
T ss_pred hhc
Confidence 654
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=96.81 E-value=0.0011 Score=58.59 Aligned_cols=80 Identities=20% Similarity=0.243 Sum_probs=54.5
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCC
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCE 254 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd 254 (512)
.|.+|+|+|+ |++|...++.+...|+ +|+++++++++++.+ +++ |... ..|..+
T Consensus 28 ~G~~VlV~Ga-G~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a-~~l--------------------Ga~~---vi~~~~ 82 (182)
T d1vj0a2 28 AGKTVVIQGA-GPLGLFGVVIARSLGAENVIVIAGSPNRLKLA-EEI--------------------GADL---TLNRRE 82 (182)
T ss_dssp BTCEEEEECC-SHHHHHHHHHHHHTTBSEEEEEESCHHHHHHH-HHT--------------------TCSE---EEETTT
T ss_pred CCCEEEEECC-Cccchhheeccccccccccccccccccccccc-ccc--------------------cceE---EEeccc
Confidence 5899999997 8999999999999998 899999999887533 222 2221 224443
Q ss_pred hhhHHHHHHHHHHHc--CCCccccccccc
Q 010380 255 PADVQKLSNFAVNEF--GSIDIWINNAGT 281 (512)
Q Consensus 255 ~~sv~~~~~~i~~~~--g~IDvLInnAG~ 281 (512)
. +..+..+++.+.. ..+|++|.+.|.
T Consensus 83 ~-~~~~~~~~i~~~~~~~g~Dvvid~vG~ 110 (182)
T d1vj0a2 83 T-SVEERRKAIMDITHGRGADFILEATGD 110 (182)
T ss_dssp S-CHHHHHHHHHHHTTTSCEEEEEECSSC
T ss_pred c-chHHHHHHHHHhhCCCCceEEeecCCc
Confidence 2 2333334444433 248999999886
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=96.78 E-value=0.0014 Score=57.58 Aligned_cols=41 Identities=22% Similarity=0.297 Sum_probs=37.0
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHH
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRM 216 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~ 216 (512)
+|++|+|+||+|++|...++.+...|++|+.+++++++.+.
T Consensus 27 ~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~ 67 (171)
T d1iz0a2 27 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLAL 67 (171)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHH
T ss_pred CCCEEEEEeccccchhhhhhhhccccccccccccccccccc
Confidence 68899999999999999999988999999999998877653
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.76 E-value=0.0087 Score=51.27 Aligned_cols=118 Identities=18% Similarity=0.180 Sum_probs=74.5
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 175 AGPRNVVITGSTRGLGKALAREFLLSGD--RVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 175 l~gk~vLVTGassGIG~aiA~~La~~Ga--~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
-.++.|.|.|+ |.+|..+|..|+.+|. +|++.++++++++....++...... ....+.....|.
T Consensus 4 ~~~~KI~IiGa-G~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~-------------~~~~~~~~~~d~ 69 (148)
T d1ldna1 4 NGGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVF-------------APKPVDIWHGDY 69 (148)
T ss_dssp TTSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTS-------------SSSCCEEEECCG
T ss_pred CCCCeEEEECc-CHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccc-------------cCCCeEEEECCH
Confidence 35677888897 9999999999999884 7999999999887777777652110 122333333332
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeec
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD 331 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vS 331 (512)
++ ...-|++|.+||... .+ .+...| .+..| ..+.+.+.+.+.+....+.++++|
T Consensus 70 ---~~-----------l~daDvvvitag~~~--~~-~~~R~d----l~~~N----~~i~~~i~~~i~~~~p~a~~ivvt 123 (148)
T d1ldna1 70 ---DD-----------CRDADLVVICAGANQ--KP-GETRLD----LVDKN----IAIFRSIVESVMASGFQGLFLVAT 123 (148)
T ss_dssp ---GG-----------TTTCSEEEECCSCCC--CT-TTCSGG----GHHHH----HHHHHHHHHHHHHHTCCSEEEECS
T ss_pred ---HH-----------hccceeEEEeccccc--cc-CcchhH----HHHHH----HHHHHHHHHHHHhhCCCceEEEec
Confidence 22 235799999999754 11 111112 22334 334555666666555567777775
|
| >d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: CoaB-like family: CoaB-like domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) species: Escherichia coli [TaxId: 562]
Probab=96.60 E-value=0.0024 Score=58.79 Aligned_cols=79 Identities=19% Similarity=0.201 Sum_probs=55.3
Q ss_pred CCCCCEEEEECC----------------CChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCc
Q 010380 174 KAGPRNVVITGS----------------TRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSK 237 (512)
Q Consensus 174 ~l~gk~vLVTGa----------------ssGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~ 237 (512)
+|+|+.||||+| ||-+|.++|+++..+|++|.++.-.....
T Consensus 3 dl~g~~vlITaG~T~E~ID~VR~ItN~SSGk~G~aiA~~~~~~Ga~V~li~g~~~~~----------------------- 59 (223)
T d1u7za_ 3 DLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVSLP----------------------- 59 (223)
T ss_dssp TTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCCCC-----------------------
T ss_pred ccCCCEEEEECCCCcccCCCcceeccCCcHHHHHHHHHHHHHcCCchhhhhcccccC-----------------------
Confidence 689999999985 56899999999999999999886543210
Q ss_pred ccccCceEEEEEccCCChhhHHHHHHHHHHHcCCCcccccccccCC
Q 010380 238 KNLVHAKVAGIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNK 283 (512)
Q Consensus 238 ~~~~g~~v~~v~~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~ 283 (512)
....+..+ .+.+.++ +.+.+.+.+...|++|++|.+..
T Consensus 60 ---~p~~~~~~--~~~t~~~---m~~~~~~~~~~~D~~i~aAAvsD 97 (223)
T d1u7za_ 60 ---TPPFVKRV--DVMTALE---MEAAVNASVQQQNIFIGCAAVAD 97 (223)
T ss_dssp ---CCTTEEEE--ECCSHHH---HHHHHHHHGGGCSEEEECCBCCS
T ss_pred ---cccccccc--eehhhHH---HHHHHHhhhccceeEeeeechhh
Confidence 11223322 3344444 44445555567899999999976
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.60 E-value=0.0048 Score=53.75 Aligned_cols=80 Identities=18% Similarity=0.211 Sum_probs=54.6
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCC
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCE 254 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd 254 (512)
.|.+|+|.|+ |++|...+..+...|+ +|+++++++++++.+ +++ |... ++..+-.+
T Consensus 26 ~gd~VlI~G~-G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a-~~~--------------------Ga~~-~~~~~~~~ 82 (171)
T d1pl8a2 26 LGHKVLVCGA-GPIGMVTLLVAKAMGAAQVVVTDLSATRLSKA-KEI--------------------GADL-VLQISKES 82 (171)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHH-HHT--------------------TCSE-EEECSSCC
T ss_pred CCCEEEEECC-CccHHHHHHHHHHcCCceEEeccCCHHHHHHH-HHh--------------------CCcc-cccccccc
Confidence 4678999987 9999999999999998 799999999887643 222 2222 22222233
Q ss_pred hhhHHHHHHHHHHHcC-CCccccccccc
Q 010380 255 PADVQKLSNFAVNEFG-SIDIWINNAGT 281 (512)
Q Consensus 255 ~~sv~~~~~~i~~~~g-~IDvLInnAG~ 281 (512)
.....+.+...+| .+|++|.+.|.
T Consensus 83 ---~~~~~~~~~~~~g~g~Dvvid~~G~ 107 (171)
T d1pl8a2 83 ---PQEIARKVEGQLGCKPEVTIECTGA 107 (171)
T ss_dssp ---HHHHHHHHHHHHTSCCSEEEECSCC
T ss_pred ---cccccccccccCCCCceEEEeccCC
Confidence 3334444444443 68999999985
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=96.50 E-value=0.0015 Score=56.91 Aligned_cols=80 Identities=13% Similarity=0.188 Sum_probs=55.0
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCC
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCE 254 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd 254 (512)
.+.+++|.|+++++|..+++.+...|+ +|+++++++++++.+. ++ |... ..|.++
T Consensus 27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~-~~--------------------Ga~~---~i~~~~ 82 (170)
T d1jvba2 27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAK-RA--------------------GADY---VINASM 82 (170)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHH-HH--------------------TCSE---EEETTT
T ss_pred CCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHH-Hc--------------------CCce---eeccCC
Confidence 578999999999999999999998895 8999999987765432 21 2221 234455
Q ss_pred hhhHHHHHHHHHHHcCCCccccccccc
Q 010380 255 PADVQKLSNFAVNEFGSIDIWINNAGT 281 (512)
Q Consensus 255 ~~sv~~~~~~i~~~~g~IDvLInnAG~ 281 (512)
.+..++..+.. .-+.+|++|.++|.
T Consensus 83 ~~~~~~~~~~~--~~~~~d~vid~~g~ 107 (170)
T d1jvba2 83 QDPLAEIRRIT--ESKGVDAVIDLNNS 107 (170)
T ss_dssp SCHHHHHHHHT--TTSCEEEEEESCCC
T ss_pred cCHHHHHHHHh--hcccchhhhccccc
Confidence 44444443322 12359999999985
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=96.31 E-value=0.033 Score=48.21 Aligned_cols=121 Identities=11% Similarity=0.075 Sum_probs=77.8
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEc
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGD--RVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIAC 250 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga--~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~ 250 (512)
..+..+.+.|.|+ |.+|..+|..|+.+|. ++++++++++.++....++...... .+........
T Consensus 16 ~~~~~~KV~IIGa-G~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~-------------~~~~~~~~~~ 81 (160)
T d1i0za1 16 ATVPNNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLF-------------LQTPKIVADK 81 (160)
T ss_dssp CCCCSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGG-------------CCCSEEEECS
T ss_pred ccCCCCeEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccc-------------cCCCeEEecc
Confidence 3455677888896 9999999999999994 7999999998887777777542110 1222222223
Q ss_pred cCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEee
Q 010380 251 DVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNM 330 (512)
Q Consensus 251 Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~v 330 (512)
| +++ ...-|++|..||... .+ ..+.. ..++.|. .+.+.+.+.+.+....+.++++
T Consensus 82 d---~~~-----------~~~adiVVitAg~~~--~~--g~tR~---~l~~~N~----~i~~~i~~~i~~~~p~aiiivv 136 (160)
T d1i0za1 82 D---YSV-----------TANSKIVVVTAGVRQ--QE--GESRL---NLVQRNV----NVFKFIIPQIVKYSPDCIIIVV 136 (160)
T ss_dssp S---GGG-----------GTTCSEEEECCSCCC--CT--TCCGG---GGHHHHH----HHHHHHHHHHHHHCTTCEEEEC
T ss_pred c---hhh-----------cccccEEEEecCCcc--cc--CcchH---HHHHHHH----HHHHHHHHHHHhcCCCcEEEEe
Confidence 3 222 235799999999754 21 22322 2333343 4566777777776566777777
Q ss_pred cC
Q 010380 331 DG 332 (512)
Q Consensus 331 SS 332 (512)
|-
T Consensus 137 tN 138 (160)
T d1i0za1 137 SN 138 (160)
T ss_dssp SS
T ss_pred CC
Confidence 53
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=96.29 E-value=0.0015 Score=57.78 Aligned_cols=79 Identities=16% Similarity=0.062 Sum_probs=53.1
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCC
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCE 254 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd 254 (512)
.|.+|+|.|+ ||+|...++.+...|+ +|+++++++++++.+. ++ |.. ..+|..+
T Consensus 27 ~g~~VlI~Ga-G~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~-~l--------------------Ga~---~~i~~~~ 81 (174)
T d1jqba2 27 MGSSVVVIGI-GAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAK-FY--------------------GAT---DILNYKN 81 (174)
T ss_dssp TTCCEEEECC-SHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHH-HH--------------------TCS---EEECGGG
T ss_pred CCCEEEEEcC-CcchhhhhhhhhcccccccccccchhhhHHHHH-hh--------------------Ccc---ccccccc
Confidence 4778999986 8999999999999997 7999999988765442 22 221 2235555
Q ss_pred hhhHHHHHHHHHHHcCCCccccccccc
Q 010380 255 PADVQKLSNFAVNEFGSIDIWINNAGT 281 (512)
Q Consensus 255 ~~sv~~~~~~i~~~~g~IDvLInnAG~ 281 (512)
++..+++.+ +.+ ...+|++|.++|.
T Consensus 82 ~~~~~~v~~-~t~-g~G~D~vid~~g~ 106 (174)
T d1jqba2 82 GHIEDQVMK-LTN-GKGVDRVIMAGGG 106 (174)
T ss_dssp SCHHHHHHH-HTT-TSCEEEEEECSSC
T ss_pred hhHHHHHHH-Hhh-ccCcceEEEccCC
Confidence 433333222 211 1249999999986
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=96.28 E-value=0.0036 Score=52.20 Aligned_cols=73 Identities=15% Similarity=0.282 Sum_probs=52.0
Q ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhh
Q 010380 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPAD 257 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~s 257 (512)
|.++|.|+ |-+|..+|+.|.++|+.|++++.+++..+++.+ .+ ...+.+|.++++.
T Consensus 1 k~~iIiG~-G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~---------------------~~--~~~~~gd~~~~~~ 56 (134)
T d2hmva1 1 KQFAVIGL-GRFGGSIVKELHRMGHEVLAVDINEEKVNAYAS---------------------YA--THAVIANATEENE 56 (134)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTT---------------------TC--SEEEECCTTCTTH
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHH---------------------hC--Ccceeeecccchh
Confidence 45677776 789999999999999999999999987764321 12 2346789999887
Q ss_pred HHHHHHHHHHHcCCCcccccccc
Q 010380 258 VQKLSNFAVNEFGSIDIWINNAG 280 (512)
Q Consensus 258 v~~~~~~i~~~~g~IDvLInnAG 280 (512)
++++ .....|.+|...+
T Consensus 57 l~~a------~i~~a~~vi~~~~ 73 (134)
T d2hmva1 57 LLSL------GIRNFEYVIVAIG 73 (134)
T ss_dssp HHHH------TGGGCSEEEECCC
T ss_pred hhcc------CCccccEEEEEcC
Confidence 6654 1124566655443
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=96.26 E-value=0.029 Score=47.62 Aligned_cols=115 Identities=15% Similarity=0.165 Sum_probs=71.6
Q ss_pred CEEEEECCCChHHHHHHHHHHHCCC--EEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCCh
Q 010380 178 RNVVITGSTRGLGKALAREFLLSGD--RVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEP 255 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~Ga--~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~ 255 (512)
..+.|.|+ |.+|.++|..|+.+|. ++++.++++++++....++...... .+........| .
T Consensus 2 ~Ki~IIGa-G~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~-------------~~~~~i~~~~~---~ 64 (143)
T d1llda1 2 TKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSF-------------YPTVSIDGSDD---P 64 (143)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGG-------------STTCEEEEESC---G
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhcccc-------------CCCceeecCCC---H
Confidence 34677796 9999999999999994 7999999998877666666552111 11111111222 2
Q ss_pred hhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeec
Q 010380 256 ADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD 331 (512)
Q Consensus 256 ~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vS 331 (512)
+++ ..-|++|..||... . ...+.+ +.+..|. .+.+...+.+.+....+.++++|
T Consensus 65 ~~~-----------~daDvVVitaG~~~--~--~g~~R~---dl~~~N~----~i~~~i~~~i~~~~p~ai~ivvt 118 (143)
T d1llda1 65 EIC-----------RDADMVVITAGPRQ--K--PGQSRL---ELVGATV----NILKAIMPNLVKVAPNAIYMLIT 118 (143)
T ss_dssp GGG-----------TTCSEEEECCCCCC--C--TTCCHH---HHHHHHH----HHHHHHHHHHHHHCTTSEEEECC
T ss_pred HHh-----------hCCcEEEEeccccc--C--CCCchh---hhhhhhH----HHHHHHHHHHHhhCCCeEEEEeC
Confidence 221 24699999999753 1 223333 3455555 34555566666654566777665
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.18 E-value=0.021 Score=49.42 Aligned_cols=120 Identities=14% Similarity=0.155 Sum_probs=74.6
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEcc
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGD--RVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACD 251 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga--~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~D 251 (512)
+++...|.|.|+ |.+|..+|..|+.+|. ++++++++++.++....+|...... .+........|
T Consensus 16 ~~~~~KI~IIGa-G~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~-------------~~~~~~~~~~d 81 (159)
T d2ldxa1 16 KLSRCKITVVGV-GDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLF-------------LSTPKIVFGKD 81 (159)
T ss_dssp CCCCCEEEEECC-SHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTT-------------CSCCEEEEESS
T ss_pred cCCCCeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchh-------------cCCCeEEeccc
Confidence 345556788896 9999999999999984 7999999998887777777652111 12222222333
Q ss_pred CCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeec
Q 010380 252 VCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD 331 (512)
Q Consensus 252 ltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vS 331 (512)
. ++ ...-|++|..||... .+ ..+.++ .++.| ..+.+.+.+.+.+....+.++++|
T Consensus 82 ~---~~-----------~~~adivvitag~~~--~~--~~~R~d---ll~~N----~~i~~~i~~~i~~~~p~~ivivvt 136 (159)
T d2ldxa1 82 Y---NV-----------SANSKLVIITAGARM--VS--GQTRLD---LLQRN----VAIMKAIVPGVIQNSPDCKIIVVT 136 (159)
T ss_dssp G---GG-----------GTTEEEEEECCSCCC--CT--TTCSSC---TTHHH----HHHHHHHTTTHHHHSTTCEEEECS
T ss_pred h---hh-----------hccccEEEEeccccc--CC--CCCHHH---HHHHH----HHHHHHHHHHHhccCCCeEEEEeC
Confidence 2 22 235799999999754 21 122211 12333 334556666666655667777775
Q ss_pred C
Q 010380 332 G 332 (512)
Q Consensus 332 S 332 (512)
-
T Consensus 137 N 137 (159)
T d2ldxa1 137 N 137 (159)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.16 E-value=0.0016 Score=57.99 Aligned_cols=78 Identities=19% Similarity=0.217 Sum_probs=51.5
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEE-EEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCCh
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSGDRVV-VASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEP 255 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~Ga~Vv-l~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~ 255 (512)
+++|||+||+||+|...++-....|++++ .+++++++...+..++ +.. ...|..++
T Consensus 31 ~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~--------------------gad---~vi~~~~~ 87 (187)
T d1vj1a2 31 NQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSEL--------------------GFD---AAVNYKTG 87 (187)
T ss_dssp CCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHS--------------------CCS---EEEETTSS
T ss_pred CCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcc--------------------cce---EEeeccch
Confidence 48999999999999999998888998644 4566666554443332 221 23465554
Q ss_pred hhHHHHHHHHHHHcCCCcccccccc
Q 010380 256 ADVQKLSNFAVNEFGSIDIWINNAG 280 (512)
Q Consensus 256 ~sv~~~~~~i~~~~g~IDvLInnAG 280 (512)
+. .+.++++.. ..+|+++.+.|
T Consensus 88 ~~-~~~~~~~~~--~GvDvv~D~vG 109 (187)
T d1vj1a2 88 NV-AEQLREACP--GGVDVYFDNVG 109 (187)
T ss_dssp CH-HHHHHHHCT--TCEEEEEESSC
T ss_pred hH-HHHHHHHhc--cCceEEEecCC
Confidence 43 333333322 35999998887
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.11 E-value=0.042 Score=46.69 Aligned_cols=116 Identities=15% Similarity=0.146 Sum_probs=67.6
Q ss_pred EEEEECCCChHHHHHHHHHHHCC--CEEEEEEcChh--hHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCC
Q 010380 179 NVVITGSTRGLGKALAREFLLSG--DRVVVASRSSE--SVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCE 254 (512)
Q Consensus 179 ~vLVTGassGIG~aiA~~La~~G--a~Vvl~~R~~~--~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd 254 (512)
.+.|.||+|.+|..+|..|+.+| .++++++++++ +++....++....... ....++.....+ |
T Consensus 2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~-----------~~~~~~~~~~~~--d 68 (145)
T d1hyea1 2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGT-----------RSDANIYVESDE--N 68 (145)
T ss_dssp EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTS-----------CCCCEEEEEETT--C
T ss_pred EEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhccccc-----------ccCCccccCCcc--h
Confidence 37899999999999999999999 38999999863 3444455555422110 012233322221 2
Q ss_pred hhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEee
Q 010380 255 PADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNM 330 (512)
Q Consensus 255 ~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~v 330 (512)
.++ ...-|++|.+||... ....+.. ..++.|.. +.+...+.+.+... ..|+.+
T Consensus 69 ~~~-----------l~~aDvVVitAG~~~----~~g~sR~---dl~~~Na~----iv~~i~~~i~~~~~-~~iivV 121 (145)
T d1hyea1 69 LRI-----------IDESDVVIITSGVPR----KEGMSRM---DLAKTNAK----IVGKYAKKIAEICD-TKIFVI 121 (145)
T ss_dssp GGG-----------GTTCSEEEECCSCCC----CTTCCHH---HHHHHHHH----HHHHHHHHHHHHCC-CEEEEC
T ss_pred HHH-----------hccceEEEEeccccc----CCCCChh---hhhhhhHH----HHHHHHHHHhccCC-CeEEEE
Confidence 222 235799999999743 2223433 34555654 34555555554423 345444
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=96.10 E-value=0.0022 Score=56.28 Aligned_cols=42 Identities=24% Similarity=0.325 Sum_probs=37.1
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHH
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMT 217 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~ 217 (512)
++.+|||+||+||+|...++.....|++|+.+++++++.+.+
T Consensus 23 ~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~ 64 (167)
T d1tt7a2 23 EKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYL 64 (167)
T ss_dssp GGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHH
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHH
Confidence 466799999999999999998888999999999998886543
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=96.10 E-value=0.0034 Score=55.64 Aligned_cols=42 Identities=21% Similarity=0.301 Sum_probs=37.2
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHH
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMT 217 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~ 217 (512)
+++++||+||+||+|...++-....|++|+.+++++++.+.+
T Consensus 31 ~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~ 72 (177)
T d1o89a2 31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYL 72 (177)
T ss_dssp GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHH
T ss_pred CCCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHH
Confidence 456899999999999999999999999999999999886533
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=96.03 E-value=0.005 Score=54.21 Aligned_cols=42 Identities=14% Similarity=0.224 Sum_probs=36.9
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcChhhHHHH
Q 010380 175 AGPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRSSESVRMT 217 (512)
Q Consensus 175 l~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~~~l~~~ 217 (512)
-.|.+|+|.|+ ||+|...++.+...|+ +|+++++++++++.+
T Consensus 28 ~~g~tVlI~G~-GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~A 70 (176)
T d1d1ta2 28 KPGSTCVVFGL-GGVGLSVIMGCKSAGASRIIGIDLNKDKFEKA 70 (176)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHH
T ss_pred CCCCEEEEECC-CchhHHHHHHHHHcCCceEEEecCcHHHHHHH
Confidence 35889999986 8999999999999995 899999999998643
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=96.03 E-value=0.0059 Score=53.35 Aligned_cols=79 Identities=14% Similarity=0.183 Sum_probs=54.4
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCC
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCE 254 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd 254 (512)
.|.+|+|.|+ +|+|...+..+...|+ +|+++++++++.+.+.+ .+... ..|..+
T Consensus 28 ~GdtVlV~Ga-GG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~---------------------~Ga~~---~i~~~~ 82 (176)
T d2jhfa2 28 QGSTCAVFGL-GGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKE---------------------VGATE---CVNPQD 82 (176)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH---------------------TTCSE---EECGGG
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHH---------------------hCCee---EEecCC
Confidence 5789999999 7899999999999995 89999999988754322 12221 123222
Q ss_pred -hhhHHHHHHHHHHHcCCCccccccccc
Q 010380 255 -PADVQKLSNFAVNEFGSIDIWINNAGT 281 (512)
Q Consensus 255 -~~sv~~~~~~i~~~~g~IDvLInnAG~ 281 (512)
.+.+.+..+... .+.+|++|.+.|.
T Consensus 83 ~~~~~~~~~~~~~--~~G~D~vid~~G~ 108 (176)
T d2jhfa2 83 YKKPIQEVLTEMS--NGGVDFSFEVIGR 108 (176)
T ss_dssp CSSCHHHHHHHHT--TSCBSEEEECSCC
T ss_pred chhHHHHHHHHHh--cCCCCEEEecCCc
Confidence 234454444432 2479999999986
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=96.02 E-value=0.034 Score=46.90 Aligned_cols=114 Identities=16% Similarity=0.116 Sum_probs=68.2
Q ss_pred EEEECCCChHHHHHHHHHHHCC--CEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhh
Q 010380 180 VVITGSTRGLGKALAREFLLSG--DRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPAD 257 (512)
Q Consensus 180 vLVTGassGIG~aiA~~La~~G--a~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~s 257 (512)
+.|+|+ |.+|..+|..|+.+| .++++.++++++++....++...... .......... .|.++
T Consensus 3 I~IIGa-G~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~-------------~~~~~~i~~~--~~~~~ 66 (142)
T d1guza1 3 ITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPV-------------GLFDTKVTGS--NDYAD 66 (142)
T ss_dssp EEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHH-------------HTCCCEEEEE--SCGGG
T ss_pred EEEECc-CHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccch-------------hcccceEEec--CCHHH
Confidence 567796 999999999999998 48999999998876655555332111 1112222222 23332
Q ss_pred HHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeec
Q 010380 258 VQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD 331 (512)
Q Consensus 258 v~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vS 331 (512)
+..-|++|.+||.... ...+. ...++.|.. +.+...+.+.+....+.++++|
T Consensus 67 -----------~~dadvvvitag~~~~----~g~~r---~~l~~~N~~----i~~~i~~~i~~~~p~aivivvt 118 (142)
T d1guza1 67 -----------TANSDIVIITAGLPRK----PGMTR---EDLLMKNAG----IVKEVTDNIMKHSKNPIIIVVS 118 (142)
T ss_dssp -----------GTTCSEEEECCSCCCC----TTCCH---HHHHHHHHH----HHHHHHHHHHHHCSSCEEEECC
T ss_pred -----------hcCCeEEEEEEecCCC----CCCch---HHHHHHHHH----HHHHHHHHhhccCCCeEEEEec
Confidence 2367999999997541 11222 233444443 3455555555554566777664
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=95.94 E-value=0.064 Score=45.86 Aligned_cols=126 Identities=17% Similarity=0.113 Sum_probs=74.5
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSG-DRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~G-a~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
.-+.+.+.|.|+ |.+|..+|..|+..| +++++.+.+++.++....++...... .+....... -
T Consensus 4 ~~k~~KI~IIGa-G~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~-------------~~~~~~~~~--~ 67 (154)
T d1pzga1 4 VQRRKKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSV-------------VDTNVSVRA--E 67 (154)
T ss_dssp CSCCCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHH-------------TTCCCCEEE--E
T ss_pred ccCCCcEEEECC-CHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccc-------------cCCeeEEec--c
Confidence 345677888897 999999999999888 58999999998887777777553221 011111111 1
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccccccCCCCC-CCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeec
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFK-PLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD 331 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~-~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vS 331 (512)
++. +. ....-|++|..||.....+ +-.+.+.. ..+..|. .+.+...+.+.+....+.++++|
T Consensus 68 ~~~---~~-------~~~~adiVvitag~~~~~g~~~~~~tR~---~l~~~n~----~iv~~i~~~i~~~~p~aiviivs 130 (154)
T d1pzga1 68 YSY---EA-------ALTGADCVIVTAGLTKVPGKPDSEWSRN---DLLPFNS----KIIREIGQNIKKYCPKTFIIVVT 130 (154)
T ss_dssp CSH---HH-------HHTTCSEEEECCSCSSCTTCCGGGCCGG---GGHHHHH----HHHHHHHHHHHHHCTTCEEEECC
T ss_pred Cch---hh-------hhcCCCeEEEecccccCCCCCCcccchh---hhhhhhH----HHHHHHHHHHHhcCCCcEEEEeC
Confidence 111 11 1126799999999864211 11112322 2233343 34555666666655567777775
Q ss_pred C
Q 010380 332 G 332 (512)
Q Consensus 332 S 332 (512)
.
T Consensus 131 N 131 (154)
T d1pzga1 131 N 131 (154)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=95.90 E-value=0.047 Score=45.97 Aligned_cols=112 Identities=19% Similarity=0.179 Sum_probs=71.3
Q ss_pred EEEECCCChHHHHHHHHHHHCC--CEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhh
Q 010380 180 VVITGSTRGLGKALAREFLLSG--DRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPAD 257 (512)
Q Consensus 180 vLVTGassGIG~aiA~~La~~G--a~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~s 257 (512)
+.|.|+ |.+|..+|..++.+| .++++.++++++++....++.....- .........| .++
T Consensus 3 I~IIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~--------------~~~~~~~~~~---~~~ 64 (140)
T d1a5za1 3 IGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPF--------------TRRANIYAGD---YAD 64 (140)
T ss_dssp EEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGG--------------SCCCEEEECC---GGG
T ss_pred EEEECc-CHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccc--------------cccccccCCc---HHH
Confidence 566786 899999999999888 48999999998887766666553211 1122223323 322
Q ss_pred HHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeec
Q 010380 258 VQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD 331 (512)
Q Consensus 258 v~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vS 331 (512)
+ ..-|++|.+||.... ...+.. ..+..|. .+.+...+.+.+....+.++++|
T Consensus 65 ~-----------~~adivvitag~~~~----~g~~r~---dl~~~N~----~I~~~i~~~i~~~~p~aivivvt 116 (140)
T d1a5za1 65 L-----------KGSDVVIVAAGVPQK----PGETRL---QLLGRNA----RVMKEIARNVSKYAPDSIVIVVT 116 (140)
T ss_dssp G-----------TTCSEEEECCCCCCC----SSCCHH---HHHHHHH----HHHHHHHHHHHHHCTTCEEEECS
T ss_pred h-----------cCCCEEEEecccccC----CCcchh---hhhcccc----chHHHHHHHHHhcCCCcEEEEeC
Confidence 2 257999999997541 223332 2344453 35666777777765667777765
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=95.90 E-value=0.047 Score=46.19 Aligned_cols=114 Identities=12% Similarity=0.142 Sum_probs=71.8
Q ss_pred EEEEECCCChHHHHHHHHHHHCCC--EEEEEEcC--hhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCC
Q 010380 179 NVVITGSTRGLGKALAREFLLSGD--RVVVASRS--SESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCE 254 (512)
Q Consensus 179 ~vLVTGassGIG~aiA~~La~~Ga--~Vvl~~R~--~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd 254 (512)
.+.|+||+|.+|..+|..++.+|. ++++.+.+ ++.++....++..... ...+......|
T Consensus 2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~--------------~~~~~~i~~~~--- 64 (142)
T d1o6za1 2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIA--------------YDSNTRVRQGG--- 64 (142)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHT--------------TTCCCEEEECC---
T ss_pred eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhccc--------------ccCCceEeeCC---
Confidence 478999999999999999999984 79999864 3444444445544211 11223333333
Q ss_pred hhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeec
Q 010380 255 PADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD 331 (512)
Q Consensus 255 ~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vS 331 (512)
+++ ...-|++|..||... .+ ..+. .+.++.|. -+.+...+.+.+....+.++++|
T Consensus 65 ~~~-----------~~~aDiVvitaG~~~--~~--g~~R---~dl~~~N~----~I~~~i~~~i~~~~p~~i~ivvt 119 (142)
T d1o6za1 65 YED-----------TAGSDVVVITAGIPR--QP--GQTR---IDLAGDNA----PIMEDIQSSLDEHNDDYISLTTS 119 (142)
T ss_dssp GGG-----------GTTCSEEEECCCCCC--CT--TCCH---HHHHHHHH----HHHHHHHHHHHTTCSCCEEEECC
T ss_pred HHH-----------hhhcCEEEEeccccc--cc--CCch---hhHHHHHH----HHHHHHHHHHHhcCCCceEEEec
Confidence 332 236799999999743 21 2232 33555554 45677778887776667777764
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=95.88 E-value=0.0052 Score=53.41 Aligned_cols=75 Identities=19% Similarity=0.215 Sum_probs=53.2
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCCh
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEP 255 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~ 255 (512)
.|.+|+|.|+ ||+|...++.+...|++++++++++++.+. .+++ +.. ...|..+.
T Consensus 30 ~G~~VlI~Ga-G~vG~~a~qlak~~Ga~~i~~~~~~~~~~~-a~~l--------------------Gad---~~i~~~~~ 84 (168)
T d1uufa2 30 PGKKVGVVGI-GGLGHMGIKLAHAMGAHVVAFTTSEAKREA-AKAL--------------------GAD---EVVNSRNA 84 (168)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSGGGHHH-HHHH--------------------TCS---EEEETTCH
T ss_pred CCCEEEEecc-chHHHHHHHHhhcccccchhhccchhHHHH-Hhcc--------------------CCc---EEEECchh
Confidence 5889999986 899999999888899999999999887643 2332 222 12355554
Q ss_pred hhHHHHHHHHHHHcCCCcccccccccC
Q 010380 256 ADVQKLSNFAVNEFGSIDIWINNAGTN 282 (512)
Q Consensus 256 ~sv~~~~~~i~~~~g~IDvLInnAG~~ 282 (512)
+... .....+|++|.+.|..
T Consensus 85 ~~~~-------~~~~~~D~vid~~g~~ 104 (168)
T d1uufa2 85 DEMA-------AHLKSFDFILNTVAAP 104 (168)
T ss_dssp HHHH-------TTTTCEEEEEECCSSC
T ss_pred hHHH-------HhcCCCceeeeeeecc
Confidence 4322 2224799999999863
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=95.87 E-value=0.02 Score=48.53 Aligned_cols=116 Identities=16% Similarity=0.134 Sum_probs=69.6
Q ss_pred CEEEEECCCChHHHHHHHHHHHCC-CEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChh
Q 010380 178 RNVVITGSTRGLGKALAREFLLSG-DRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPA 256 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~G-a~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~ 256 (512)
|.+.|.|+ |.+|.++|..|+.++ +++++.+.+++..+....++...... .+.......+ .|.+
T Consensus 2 ~KI~IIGa-G~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~-------------~~~~~~i~~~--~d~~ 65 (142)
T d1uxja1 2 KKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPI-------------EGFDVRVTGT--NNYA 65 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHH-------------HTCCCCEEEE--SCGG
T ss_pred CeEEEECC-CHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccc-------------cCCCCEEEec--CcHH
Confidence 45677786 999999999999888 48999999988777666665432110 0111111211 1222
Q ss_pred hHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeec
Q 010380 257 DVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD 331 (512)
Q Consensus 257 sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vS 331 (512)
+ ...-|++|.+||... . ...+ -...+..|. .+.+...+.+.+....+.++++|
T Consensus 66 ~-----------~~~advvvitag~~~--~--~~~~---r~dl~~~N~----~i~~~i~~~i~k~~p~aivivvt 118 (142)
T d1uxja1 66 D-----------TANSDVIVVTSGAPR--K--PGMS---REDLIKVNA----DITRACISQAAPLSPNAVIIMVN 118 (142)
T ss_dssp G-----------GTTCSEEEECCSCC----------------CHHHHH----HHHHHHHHHHGGGCTTCEEEECS
T ss_pred H-----------hcCCCEEEEeeeccC--C--cCcc---hhHHHhHHH----HHHHHHHHHHhccCCCceEEEeC
Confidence 2 125799999999753 1 1122 223344454 46777888888765667777664
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=95.75 E-value=0.012 Score=50.05 Aligned_cols=113 Identities=19% Similarity=0.224 Sum_probs=64.3
Q ss_pred EEEEECCCChHHHHHHHHHHHCCC--EEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChh
Q 010380 179 NVVITGSTRGLGKALAREFLLSGD--RVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPA 256 (512)
Q Consensus 179 ~vLVTGassGIG~aiA~~La~~Ga--~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~ 256 (512)
.+.|.|+ |.+|..+|..++.+|. ++++.++++++++....++..... .......... +++
T Consensus 3 KI~IIGa-G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~--------------~~~~~~~~~~---~~~ 64 (142)
T d1y6ja1 3 KVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLP--------------FMGQMSLYAG---DYS 64 (142)
T ss_dssp CEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCC--------------CTTCEEEC-----CGG
T ss_pred eEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcc--------------cCCCeeEeeC---cHH
Confidence 3555687 9999999999999984 799999998876655555543110 1122222222 222
Q ss_pred hHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeec
Q 010380 257 DVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD 331 (512)
Q Consensus 257 sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vS 331 (512)
+ ...-|++|..||... . ...+. ...+..|. .+.+.+.+.+.+....+.++++|
T Consensus 65 ~-----------~~~adivvitag~~~--~--~~~~r---~~l~~~N~----~i~~~i~~~i~~~~p~ai~ivvt 117 (142)
T d1y6ja1 65 D-----------VKDCDVIVVTAGANR--K--PGETR---LDLAKKNV----MIAKEVTQNIMKYYNHGVILVVS 117 (142)
T ss_dssp G-----------GTTCSEEEECCCC----------CH---HHHHHHHH----HHHHHHHHHHHHHCCSCEEEECS
T ss_pred H-----------hCCCceEEEeccccc--C--cCcch---hHHhhHHH----HHHHHHHHHhhccCCCceEEEec
Confidence 2 235799999999754 1 11222 33445554 45566667666654566777764
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.75 E-value=0.01 Score=51.18 Aligned_cols=40 Identities=20% Similarity=0.220 Sum_probs=35.4
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHH
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRM 216 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~ 216 (512)
.|++|+|.|+ |++|...++.+...|++|+++++++++++.
T Consensus 27 ~g~~VlV~Ga-G~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~ 66 (166)
T d1llua2 27 PGQWVAISGI-GGLGHVAVQYARAMGLHVAAIDIDDAKLEL 66 (166)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred CCCEEEEeec-cccHHHHHHHHHHcCCccceecchhhHHHh
Confidence 4788999886 999999999888999999999999888754
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=95.69 E-value=0.015 Score=49.47 Aligned_cols=75 Identities=13% Similarity=0.094 Sum_probs=55.6
Q ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhhH
Q 010380 179 NVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPADV 258 (512)
Q Consensus 179 ~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~sv 258 (512)
+++|.|. +-+|..+++.|.++|.+|+++..+++......++... ..+.++..|.+|++.+
T Consensus 5 HiII~G~-g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~-------------------~~~~vi~Gd~~d~~~L 64 (153)
T d1id1a_ 5 HFIVCGH-SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLG-------------------DNADVIPGDSNDSSVL 64 (153)
T ss_dssp CEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHC-------------------TTCEEEESCTTSHHHH
T ss_pred EEEEECC-CHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhc-------------------CCcEEEEccCcchHHH
Confidence 5788887 6999999999999999999999998876555554422 3577799999998876
Q ss_pred HHHHHHHHHHcCCCccccccc
Q 010380 259 QKLSNFAVNEFGSIDIWINNA 279 (512)
Q Consensus 259 ~~~~~~i~~~~g~IDvLInnA 279 (512)
+++- ....|.+|...
T Consensus 65 ~~a~------i~~a~~vi~~~ 79 (153)
T d1id1a_ 65 KKAG------IDRCRAILALS 79 (153)
T ss_dssp HHHT------TTTCSEEEECS
T ss_pred HHhc------cccCCEEEEcc
Confidence 6541 12456665543
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=95.67 E-value=0.03 Score=47.88 Aligned_cols=120 Identities=13% Similarity=0.114 Sum_probs=72.1
Q ss_pred CEEEEECCCChHHHHHHHHHHHCC-CEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChh
Q 010380 178 RNVVITGSTRGLGKALAREFLLSG-DRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPA 256 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~G-a~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~ 256 (512)
..+.|.|+ |++|..+|..|+.++ .++++.++++++++....++.....- .+.+......| +++
T Consensus 4 ~KI~IIGa-G~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~-------------~~~~~~v~~~~--~~~ 67 (150)
T d1t2da1 4 AKIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVM-------------AYSNCKVSGSN--TYD 67 (150)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHH-------------HTCCCCEEEEC--CGG
T ss_pred CeEEEECC-CHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccc-------------cCCCcEEEecc--ccc
Confidence 35677785 999999999888888 48999999998877776666542111 11222222222 222
Q ss_pred hHHHHHHHHHHHcCCCcccccccccCCCCCCC-cCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeec
Q 010380 257 DVQKLSNFAVNEFGSIDIWINNAGTNKGFKPL-LQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD 331 (512)
Q Consensus 257 sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~-~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vS 331 (512)
+ ...-|++|.+||.....+.. .+.+. ...+..|. .+.+.+.+.+.+....+.++++|
T Consensus 68 ~-----------~~~advvvitag~~~~~g~~~~~~~R---~~l~~~N~----~iv~~i~~~i~~~~p~aivivvt 125 (150)
T d1t2da1 68 D-----------LAGADVVIVTAGFTKAPGKSDKEWNR---DDLLPLNN----KIMIEIGGHIKKNCPNAFIIVVT 125 (150)
T ss_dssp G-----------GTTCSEEEECCSCSSCTTCCSTTCCG---GGGHHHHH----HHHHHHHHHHHHHCTTSEEEECS
T ss_pred c-----------cCCCcEEEEecccccCCCCCccccch---hHHHHHHH----HHHHHHHHHHHhcCCCeEEEEec
Confidence 2 23579999999975421111 11112 22344453 45566666666655567777765
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=95.63 E-value=0.045 Score=46.75 Aligned_cols=117 Identities=15% Similarity=0.193 Sum_probs=65.0
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCCC---------EEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEE
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSGD---------RVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAG 247 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~Ga---------~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~ 247 (512)
+-.|.|+||+|.+|..++..|+..+. +++...++.+.++....++... .......
T Consensus 4 p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~ 67 (154)
T d1y7ta1 4 PVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDC----------------AFPLLAG 67 (154)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTT----------------TCTTEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhcc----------------ccccccc
Confidence 33789999999999999999998662 2233344555555444444331 1122222
Q ss_pred EEccCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-CCCCe
Q 010380 248 IACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQ-PKGGH 326 (512)
Q Consensus 248 v~~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~-~~~g~ 326 (512)
+...-.+. +.+...|++|..||... -...+.++ .+..|+. +.+.+.+.+.+. ++.+.
T Consensus 68 ~~~~~~~~-----------~~~~~advViitaG~~~----~pg~~r~d---l~~~N~~----i~~~~~~~i~k~a~~~~~ 125 (154)
T d1y7ta1 68 LEATDDPK-----------VAFKDADYALLVGAAPR----KAGMERRD---LLQVNGK----IFTEQGRALAEVAKKDVK 125 (154)
T ss_dssp EEEESCHH-----------HHTTTCSEEEECCCCCC----CTTCCHHH---HHHHHHH----HHHHHHHHHHHHSCTTCE
T ss_pred cccCCchh-----------hhcccccEEEeecCcCC----CCCCcHHH---HHHHHHH----HHHHHHHHHHHhCCCCcE
Confidence 22222221 22346899999999854 23344433 3444544 445555555553 23455
Q ss_pred EEeec
Q 010380 327 IFNMD 331 (512)
Q Consensus 327 IV~vS 331 (512)
|+.+|
T Consensus 126 vivvs 130 (154)
T d1y7ta1 126 VLVVG 130 (154)
T ss_dssp EEECS
T ss_pred EEEec
Confidence 65554
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.62 E-value=0.039 Score=46.80 Aligned_cols=115 Identities=19% Similarity=0.267 Sum_probs=67.3
Q ss_pred EEEEECCCChHHHHHHHHHHHCCC--EEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChh
Q 010380 179 NVVITGSTRGLGKALAREFLLSGD--RVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPA 256 (512)
Q Consensus 179 ~vLVTGassGIG~aiA~~La~~Ga--~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~ 256 (512)
.+.|+||+|.+|.++|..|+.+|. ++++++.++.+.+ ..++... . .-...... + ...
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~--a~Dl~~~--~-------------~~~~~~~~---~-~~~ 60 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGV--AADLSHI--E-------------TRATVKGY---L-GPE 60 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHH--HHHHTTS--S-------------SSCEEEEE---E-SGG
T ss_pred eEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchh--hHHHhhh--h-------------hhcCCCeE---E-cCC
Confidence 478999999999999999999984 7999998765432 2233210 0 00111111 1 222
Q ss_pred hHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 257 DVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 257 sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+..+. ...-|++|..||... .+ ..+.. ..++.|..- .+.+.+.+.+....+.|+++|.
T Consensus 61 ~~~~~-------~~~aDivVitag~~~--~~--g~sR~---~ll~~N~~i----~~~i~~~i~~~~p~~iiivvtN 118 (144)
T d1mlda1 61 QLPDC-------LKGCDVVVIPAGVPR--KP--GMTRD---DLFNTNATI----VATLTAACAQHCPDAMICIISN 118 (144)
T ss_dssp GHHHH-------HTTCSEEEECCSCCC--CT--TCCGG---GGHHHHHHH----HHHHHHHHHHHCTTSEEEECSS
T ss_pred ChHHH-------hCCCCEEEECCCcCC--CC--CCCcc---hHHHHHHHH----HHHHHHHHHhcCCCeEEEEecC
Confidence 22222 236899999999743 22 22322 235555544 4555566655545677777754
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=95.60 E-value=0.012 Score=50.04 Aligned_cols=43 Identities=26% Similarity=0.320 Sum_probs=37.4
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHH
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVR 215 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~ 215 (512)
++..-|+|.|.||.|-+|..+|+.|.++|++|.+.+|+.....
T Consensus 5 ~~~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~~~ 47 (152)
T d2pv7a2 5 INSDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAVA 47 (152)
T ss_dssp SCTTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGGGH
T ss_pred cCCCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccccccc
Confidence 3455678999999999999999999999999999999876543
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=95.36 E-value=0.0093 Score=52.12 Aligned_cols=78 Identities=10% Similarity=0.141 Sum_probs=51.6
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCC
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDR-VVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCE 254 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~-Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd 254 (512)
.|.+|+|.|+ |++|...++.+...|++ |+++++++++++.+ +++ +.. + ..|..+
T Consensus 28 ~g~~VlI~G~-G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a-~~~--------------------Ga~-~--~i~~~~ 82 (174)
T d1f8fa2 28 PASSFVTWGA-GAVGLSALLAAKVCGASIIIAVDIVESRLELA-KQL--------------------GAT-H--VINSKT 82 (174)
T ss_dssp TTCEEEEESC-SHHHHHHHHHHHHHTCSEEEEEESCHHHHHHH-HHH--------------------TCS-E--EEETTT
T ss_pred CCCEEEEeCC-CHHHhhhhhcccccccceeeeeccHHHHHHHH-HHc--------------------CCe-E--EEeCCC
Confidence 5788999997 89999999999888985 55667887776543 222 211 1 235555
Q ss_pred hhhHHHHHHHHHHHcCCCccccccccc
Q 010380 255 PADVQKLSNFAVNEFGSIDIWINNAGT 281 (512)
Q Consensus 255 ~~sv~~~~~~i~~~~g~IDvLInnAG~ 281 (512)
++ +.+.+.++. .+.+|++|.+.|.
T Consensus 83 ~~-~~~~i~~~t--~gg~D~vid~~G~ 106 (174)
T d1f8fa2 83 QD-PVAAIKEIT--DGGVNFALESTGS 106 (174)
T ss_dssp SC-HHHHHHHHT--TSCEEEEEECSCC
T ss_pred cC-HHHHHHHHc--CCCCcEEEEcCCc
Confidence 43 333333332 2579999999985
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=95.35 E-value=0.008 Score=52.73 Aligned_cols=42 Identities=12% Similarity=0.181 Sum_probs=36.3
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcChhhHHHH
Q 010380 175 AGPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRSSESVRMT 217 (512)
Q Consensus 175 l~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~~~l~~~ 217 (512)
-.|.+|+|.|+ ||+|...++.+...|+ +|+++++++++++.+
T Consensus 26 ~~G~~VlV~Ga-GgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a 68 (174)
T d1p0fa2 26 TPGSTCAVFGL-GGVGFSAIVGCKAAGASRIIGVGTHKDKFPKA 68 (174)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGHHHH
T ss_pred CCCCEEEEECC-CchhHHHHHHHHHcCCceeeccCChHHHHHHH
Confidence 35789999986 8999999999999997 799999999887544
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=95.33 E-value=0.022 Score=49.83 Aligned_cols=79 Identities=19% Similarity=0.201 Sum_probs=53.3
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCC
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCE 254 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd 254 (512)
.|.+|+|.|+ ||||...++.+...|+ +|+++++++++++.+ +++ +... ..|..+
T Consensus 28 ~G~~VlV~G~-G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a-~~~--------------------Ga~~---~i~~~~ 82 (174)
T d1e3ia2 28 PGSTCAVFGL-GCVGLSAIIGCKIAGASRIIAIDINGEKFPKA-KAL--------------------GATD---CLNPRE 82 (174)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHH-HHT--------------------TCSE---EECGGG
T ss_pred CCCEEEEECC-ChHHHHHHHHHHHhCCceeeeeccchHHHHHH-HHh--------------------CCCc---ccCCcc
Confidence 5789999975 9999999999999998 688889998886432 222 2221 123322
Q ss_pred -hhhHHHHHHHHHHHcCCCccccccccc
Q 010380 255 -PADVQKLSNFAVNEFGSIDIWINNAGT 281 (512)
Q Consensus 255 -~~sv~~~~~~i~~~~g~IDvLInnAG~ 281 (512)
++.++...+.. ..+.+|++|.++|.
T Consensus 83 ~~~~~~~~~~~~--~~~G~d~vie~~G~ 108 (174)
T d1e3ia2 83 LDKPVQDVITEL--TAGGVDYSLDCAGT 108 (174)
T ss_dssp CSSCHHHHHHHH--HTSCBSEEEESSCC
T ss_pred chhhhhhhHhhh--hcCCCcEEEEeccc
Confidence 22344444333 23579999999986
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=95.28 E-value=0.02 Score=49.59 Aligned_cols=40 Identities=20% Similarity=0.293 Sum_probs=33.1
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcChhhHHH
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRSSESVRM 216 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~~~l~~ 216 (512)
.|.+|+|.|+ |++|...++.+...|+ +|+++++++++++.
T Consensus 32 ~g~~vli~Ga-G~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~ 72 (172)
T d1h2ba2 32 PGAYVAIVGV-GGLGHIAVQLLKVMTPATVIALDVKEEKLKL 72 (172)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESSHHHHHH
T ss_pred CCCEEEEeCC-ChHHHHHHHHHHhhcCcccccccchhHHHHH
Confidence 4788999986 9999999999888886 67778888877654
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.26 E-value=0.012 Score=50.98 Aligned_cols=41 Identities=27% Similarity=0.190 Sum_probs=35.8
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHH
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMT 217 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~ 217 (512)
.|.+++|.|+ |++|...++.+...|++|+++++++++++.+
T Consensus 27 ~g~~vlI~Ga-G~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a 67 (168)
T d1piwa2 27 PGKKVGIVGL-GGIGSMGTLISKAMGAETYVISRSSRKREDA 67 (168)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSSTTHHHH
T ss_pred CCCEEEEECC-CCcchhHHHHhhhccccccccccchhHHHHh
Confidence 5789999987 8999999988888999999999999887643
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=95.19 E-value=0.014 Score=50.56 Aligned_cols=79 Identities=15% Similarity=0.183 Sum_probs=52.4
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCC
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCE 254 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd 254 (512)
.|.+|+|.|+ +|+|...++.+...|+ +|+.+++++++++. .+++ |..- ..|..+
T Consensus 28 ~G~tVlI~Ga-GGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~-ak~l--------------------Ga~~---~i~~~~ 82 (176)
T d2fzwa2 28 PGSVCAVFGL-GGVGLAVIMGCKVAGASRIIGVDINKDKFAR-AKEF--------------------GATE---CINPQD 82 (176)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGHHH-HHHH--------------------TCSE---EECGGG
T ss_pred CCCEEEEecc-hhHHHHHHHHHHHHhcCceEEEcccHHHHHH-HHHh--------------------CCcE---EEeCCc
Confidence 5789999998 5999999999999996 67777788777643 3333 2111 123332
Q ss_pred -hhhHHHHHHHHHHHcCCCccccccccc
Q 010380 255 -PADVQKLSNFAVNEFGSIDIWINNAGT 281 (512)
Q Consensus 255 -~~sv~~~~~~i~~~~g~IDvLInnAG~ 281 (512)
.+.+.+.+.... .+.+|++|.+.|.
T Consensus 83 ~~~~~~~~~~~~~--~~g~D~vid~~G~ 108 (176)
T d2fzwa2 83 FSKPIQEVLIEMT--DGGVDYSFECIGN 108 (176)
T ss_dssp CSSCHHHHHHHHT--TSCBSEEEECSCC
T ss_pred hhhHHHHHHHHHc--CCCCcEeeecCCC
Confidence 344555444332 2469999999885
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=95.13 E-value=0.031 Score=45.10 Aligned_cols=39 Identities=26% Similarity=0.420 Sum_probs=34.7
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChh
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSE 212 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~ 212 (512)
++++||+++|.|++ .+|..-|+.|++.|++|++++....
T Consensus 8 l~l~~k~vlVvG~G-~va~~ka~~ll~~ga~v~v~~~~~~ 46 (113)
T d1pjqa1 8 CQLRDRDCLIVGGG-DVAERKARLLLEAGARLTVNALTFI 46 (113)
T ss_dssp ECCBTCEEEEECCS-HHHHHHHHHHHHTTBEEEEEESSCC
T ss_pred EEeCCCEEEEECCC-HHHHHHHHHHHHCCCeEEEEeccCC
Confidence 57899999999975 6999999999999999999987654
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=95.05 E-value=0.095 Score=45.79 Aligned_cols=115 Identities=9% Similarity=0.094 Sum_probs=62.7
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-------EEEEEEcCh--hhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEE-
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSGD-------RVVVASRSS--ESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVA- 246 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~Ga-------~Vvl~~R~~--~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~- 246 (512)
.-.|.||||+|.||..++..|++... .+.+.+.+. +.++...-++.+. ......
T Consensus 24 ~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~----------------a~~~~~~ 87 (175)
T d7mdha1 24 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDS----------------LYPLLRE 87 (175)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTT----------------TCTTEEE
T ss_pred CcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhccc----------------ccccccC
Confidence 44699999999999999999997531 344555443 3334444344331 011111
Q ss_pred EEEccCCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCC-CC
Q 010380 247 GIACDVCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPK-GG 325 (512)
Q Consensus 247 ~v~~Dltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~-~g 325 (512)
.+.. ++. .+.+...|++|..||... -...+. ...++.|. .+.+...+.+.+..+ ..
T Consensus 88 ~~~~--~~~----------~~~~~~aDvVvi~ag~~r----kpg~tR---~Dll~~N~----~I~k~~~~~i~~~a~~~~ 144 (175)
T d7mdha1 88 VSIG--IDP----------YEVFEDVDWALLIGAKPR----GPGMER---AALLDING----QIFADQGKALNAVASKNV 144 (175)
T ss_dssp EEEE--SCH----------HHHTTTCSEEEECCCCCC----CTTCCH---HHHHHHHH----HHHHHHHHHHHHHSCTTC
T ss_pred cccc--ccc----------hhhccCCceEEEeeccCC----CCCCcH---HHHHHHHH----HHHHHHHHHHHhhCCCCc
Confidence 1111 111 123347899999999754 223343 34555564 344555666655322 34
Q ss_pred eEEee
Q 010380 326 HIFNM 330 (512)
Q Consensus 326 ~IV~v 330 (512)
.|+.+
T Consensus 145 ~vlvv 149 (175)
T d7mdha1 145 KVLVV 149 (175)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 45555
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=94.97 E-value=0.017 Score=50.11 Aligned_cols=79 Identities=11% Similarity=0.167 Sum_probs=51.9
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCC
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCE 254 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd 254 (512)
.|.+|+|.|+ +|+|...+..+...|+ +|+.+++++++++.+. + .|..- ..|..+
T Consensus 28 ~g~~VlI~G~-Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~-~--------------------~GAd~---~in~~~ 82 (175)
T d1cdoa2 28 PGSTCAVFGL-GAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAK-V--------------------FGATD---FVNPND 82 (175)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH-H--------------------TTCCE---EECGGG
T ss_pred CCCEEEEEec-CCccchHHHHHHHHhhchheeecchHHHHHHHH-H--------------------cCCcE---EEcCCC
Confidence 5788999985 7888888888888886 7888999998875432 2 22221 224444
Q ss_pred hhh-HHHHHHHHHHHcCCCccccccccc
Q 010380 255 PAD-VQKLSNFAVNEFGSIDIWINNAGT 281 (512)
Q Consensus 255 ~~s-v~~~~~~i~~~~g~IDvLInnAG~ 281 (512)
.++ +++..+.. ..+.+|++|.+.|.
T Consensus 83 ~~~~~~~~~~~~--~~~G~d~vid~~G~ 108 (175)
T d1cdoa2 83 HSEPISQVLSKM--TNGGVDFSLECVGN 108 (175)
T ss_dssp CSSCHHHHHHHH--HTSCBSEEEECSCC
T ss_pred cchhHHHHHHhh--ccCCcceeeeecCC
Confidence 332 33333322 22479999999985
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=94.95 E-value=0.012 Score=46.07 Aligned_cols=38 Identities=26% Similarity=0.184 Sum_probs=34.1
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChh
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSE 212 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~ 212 (512)
+++||+++|.|. +.-|+++|+.|.++|++|++.+.+..
T Consensus 2 ~~~~K~v~ViGl-G~sG~s~a~~L~~~g~~v~~~D~~~~ 39 (93)
T d2jfga1 2 DYQGKNVVIIGL-GLTGLSCVDFFLARGVTPRVMDTRMT 39 (93)
T ss_dssp CCTTCCEEEECC-SHHHHHHHHHHHHTTCCCEEEESSSS
T ss_pred CcCCCEEEEEeE-CHHHHHHHHHHHHCCCEEEEeeCCcC
Confidence 578999999998 67899999999999999999998654
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=94.95 E-value=0.069 Score=45.26 Aligned_cols=115 Identities=15% Similarity=0.198 Sum_probs=66.1
Q ss_pred EEEEECCCChHHHHHHHHHHH-CC--CEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCCh
Q 010380 179 NVVITGSTRGLGKALAREFLL-SG--DRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEP 255 (512)
Q Consensus 179 ~vLVTGassGIG~aiA~~La~-~G--a~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~ 255 (512)
.+.|+|++|.+|.++|..|+. .+ .++++.+..+ ..+....++.... .......+ .+-.+.
T Consensus 2 KV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~-~~~g~a~Dl~h~~---------------~~~~~~~~-~~~~~~ 64 (145)
T d2cmda1 2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVAVDLSHIP---------------TAVKIKGF-SGEDAT 64 (145)
T ss_dssp EEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST-THHHHHHHHHTSC---------------SSCEEEEE-CSSCCH
T ss_pred EEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccc-cchhHHHHHHCCc---------------cccCCcEE-EcCCCc
Confidence 468999999999999998864 34 5899999864 4444444443310 11122221 222232
Q ss_pred hhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeecC
Q 010380 256 ADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMDG 332 (512)
Q Consensus 256 ~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vSS 332 (512)
+++ -.-|++|..||... .+ ..+.. ..+..|.. +.+...+.+.+....+.++++|.
T Consensus 65 ~~~-----------~~aDvvvitaG~~~--k~--g~~R~---dl~~~N~~----i~~~v~~~i~~~~p~aivivvtN 119 (145)
T d2cmda1 65 PAL-----------EGADVVLISAGVRR--KP--GMDRS---DLFNVNAG----IVKNLVQQVAKTCPKACIGIITN 119 (145)
T ss_dssp HHH-----------TTCSEEEECCSCCC--CT--TCCGG---GGHHHHHH----HHHHHHHHHHHHCTTSEEEECSS
T ss_pred ccc-----------CCCCEEEECCCccC--CC--Ccchh---hHHHHHHH----HHHHHHHHHHhhCCCcEEEEccC
Confidence 221 14699999999853 21 22322 33555643 44555566665545667777754
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.87 E-value=0.029 Score=49.88 Aligned_cols=48 Identities=21% Similarity=0.412 Sum_probs=42.1
Q ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHh
Q 010380 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLK 226 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~ 226 (512)
|+|.|.|+ |-+|..+|..++..|++|++.+++++.++...+.+++.+.
T Consensus 5 kkvaViGa-G~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~l~ 52 (192)
T d1f0ya2 5 KHVTVIGG-GLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLR 52 (192)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHH
T ss_pred EEEEEECc-CHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHHHHH
Confidence 67899998 7799999999999999999999999988888777766543
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=94.81 E-value=0.24 Score=41.50 Aligned_cols=115 Identities=11% Similarity=0.132 Sum_probs=70.8
Q ss_pred EEEEECCCChHHHHHHHHHHHCCC--EEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChh
Q 010380 179 NVVITGSTRGLGKALAREFLLSGD--RVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPA 256 (512)
Q Consensus 179 ~vLVTGassGIG~aiA~~La~~Ga--~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~ 256 (512)
.+.|.|+ |.+|..+|..|+.+|. ++++++++++.++....++...... .......... .|.+
T Consensus 2 KI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~-------------~~~~~~i~~~--~d~~ 65 (142)
T d1ojua1 2 KLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAG-------------IDKYPKIVGG--ADYS 65 (142)
T ss_dssp EEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHT-------------TTCCCEEEEE--SCGG
T ss_pred EEEEECc-CHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccc-------------cCCCCccccC--CCHH
Confidence 3567786 9999999999998883 7999999998887766666553221 1111122221 1222
Q ss_pred hHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeec
Q 010380 257 DVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD 331 (512)
Q Consensus 257 sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vS 331 (512)
+ ...-|++|..||.... ...+. ...+..|. .+.+...+.+.+....+.++++|
T Consensus 66 ~-----------~~~adiVvitag~~~~----~g~~r---~~l~~~n~----~i~~~i~~~i~~~~p~aivivvt 118 (142)
T d1ojua1 66 L-----------LKGSEIIVVTAGLARK----PGMTR---LDLAHKNA----GIIKDIAKKIVENAPESKILVVT 118 (142)
T ss_dssp G-----------GTTCSEEEECCCCCCC----SSCCH---HHHHHHHH----HHHHHHHHHHHTTSTTCEEEECS
T ss_pred H-----------hccccEEEEeccccCC----CCCch---HHHHHHhh----HHHHHHHHHHHhhCCCcEEEEec
Confidence 2 2357999999997541 12232 23333343 45566677777765567777765
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=94.73 E-value=0.046 Score=49.08 Aligned_cols=43 Identities=23% Similarity=0.295 Sum_probs=38.0
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHH
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRM 216 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~ 216 (512)
.+++||+|+|-| .|.+|..+|+.|.+.|++|++.+.+.+.+..
T Consensus 23 ~~L~gk~v~IqG-~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~ 65 (201)
T d1c1da1 23 GSLDGLTVLVQG-LGAVGGSLASLAAEAGAQLLVADTDTERVAH 65 (201)
T ss_dssp CCSTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred CCCCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEecchHHHHHH
Confidence 379999999998 6789999999999999999999998776543
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=94.72 E-value=0.023 Score=49.64 Aligned_cols=51 Identities=25% Similarity=0.427 Sum_probs=44.3
Q ss_pred cCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHH
Q 010380 172 HCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEEN 224 (512)
Q Consensus 172 ~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~ 224 (512)
..++++|.|+|.|+ ||.+++++..|.+.| +|.+..|+.++.+++.+.+...
T Consensus 13 ~~~~~~k~vlIlGa-GG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~ 63 (177)
T d1nvta1 13 IGRVKDKNIVIYGA-GGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEK 63 (177)
T ss_dssp HCCCCSCEEEEECC-SHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCcCCCEEEEECC-cHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHh
Confidence 34689999999986 789999999998777 9999999999999888888664
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=94.62 E-value=0.066 Score=45.73 Aligned_cols=90 Identities=16% Similarity=0.167 Sum_probs=54.5
Q ss_pred EEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhhHH
Q 010380 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPADVQ 259 (512)
Q Consensus 180 vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~sv~ 259 (512)
+.|.|. |-+|.++|+.|.++|++|++.+|+++.++++.+.- ................+.++.+ ..++++
T Consensus 3 I~iIG~-G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~-------~~~~~~~~~~~~~~~DiIilav---p~~~~~ 71 (165)
T d2f1ka2 3 IGVVGL-GLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQ-------LVDEAGQDLSLLQTAKIIFLCT---PIQLIL 71 (165)
T ss_dssp EEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTT-------SCSEEESCGGGGTTCSEEEECS---CHHHHH
T ss_pred EEEEee-cHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHhh-------ccceeeeecccccccccccccC---cHhhhh
Confidence 556655 99999999999999999999999987766543210 0000001111123344555444 356788
Q ss_pred HHHHHHHHHcCCCcccccccc
Q 010380 260 KLSNFAVNEFGSIDIWINNAG 280 (512)
Q Consensus 260 ~~~~~i~~~~g~IDvLInnAG 280 (512)
++++++.....+=.++++.++
T Consensus 72 ~vl~~l~~~l~~~~iv~~~~s 92 (165)
T d2f1ka2 72 PTLEKLIPHLSPTAIVTDVAS 92 (165)
T ss_dssp HHHHHHGGGSCTTCEEEECCS
T ss_pred hhhhhhhhhcccccceeeccc
Confidence 888887655444445555443
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=94.60 E-value=0.022 Score=50.84 Aligned_cols=80 Identities=15% Similarity=0.124 Sum_probs=52.8
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCC
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCE 254 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd 254 (512)
.|.+|+|.|+ +++|...+..+...|+ +|+++++++++++.+.+ .+... ..|-.+
T Consensus 25 ~G~tVlV~Ga-G~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~---------------------~Ga~~---~~~~~~ 79 (195)
T d1kola2 25 PGSTVYVAGA-GPVGLAAAASARLLGAAVVIVGDLNPARLAHAKA---------------------QGFEI---ADLSLD 79 (195)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH---------------------TTCEE---EETTSS
T ss_pred CCCEEEEECc-CHHHHHHHHHHHhhcccceeeecccchhhHhhhh---------------------ccccE---EEeCCC
Confidence 5789999986 8999998888888887 89999999887754321 23222 223333
Q ss_pred hhhHHHHHHHHHHHcCCCcccccccccC
Q 010380 255 PADVQKLSNFAVNEFGSIDIWINNAGTN 282 (512)
Q Consensus 255 ~~sv~~~~~~i~~~~g~IDvLInnAG~~ 282 (512)
+++.+.+.++. ....+|++|.+.|..
T Consensus 80 -~~~~~~i~~~t-~g~g~D~vid~vG~~ 105 (195)
T d1kola2 80 -TPLHEQIAALL-GEPEVDCAVDAVGFE 105 (195)
T ss_dssp -SCHHHHHHHHH-SSSCEEEEEECCCTT
T ss_pred -cCHHHHHHHHh-CCCCcEEEEECcccc
Confidence 33333333332 223699999999853
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=94.55 E-value=0.021 Score=49.54 Aligned_cols=44 Identities=23% Similarity=0.342 Sum_probs=38.1
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcChhhHHHHHHH
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRSSESVRMTVTE 220 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~~~l~~~~~e 220 (512)
++|.|+|.|+ ||.+++++..|.+.|+ +|.++.|+.++.+.+.+.
T Consensus 16 ~~~~vlIlGa-GGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~ 60 (167)
T d1npya1 16 KNAKVIVHGS-GGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAAL 60 (167)
T ss_dssp TTSCEEEECS-STTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHH
T ss_pred CCCeEEEECC-CHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHh
Confidence 5788999987 8999999999999997 799999999887765544
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=94.48 E-value=0.059 Score=46.79 Aligned_cols=98 Identities=18% Similarity=0.116 Sum_probs=59.8
Q ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCccc--ccCceEEEEEccCCCh
Q 010380 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKN--LVHAKVAGIACDVCEP 255 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~--~~g~~v~~v~~Dltd~ 255 (512)
++|-|.|- |-+|..+|+.|+++|++|++.+|++++.+++.++-..... ..+...... ..-.....+...+.+.
T Consensus 3 ~nIg~IGl-G~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~----~~~a~~~~~~~~~~~~~~~ii~~~~~~ 77 (176)
T d2pgda2 3 ADIALIGL-AVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTK----VLGAHSLEEMVSKLKKPRRIILLVKAG 77 (176)
T ss_dssp BSEEEECC-SHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSS----CEECSSHHHHHHHBCSSCEEEECSCTT
T ss_pred CcEEEEeE-hHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhcccccc----ccchhhhhhhhhhhcccceEEEecCch
Confidence 34667775 8899999999999999999999999988766442100000 000000000 0011223345567777
Q ss_pred hhHHHHHHHHHHHcCCCcccccccc
Q 010380 256 ADVQKLSNFAVNEFGSIDIWINNAG 280 (512)
Q Consensus 256 ~sv~~~~~~i~~~~g~IDvLInnAG 280 (512)
+.+....+.+.....+=+++|...-
T Consensus 78 ~~v~~v~~~l~~~~~~g~iiid~sT 102 (176)
T d2pgda2 78 QAVDNFIEKLVPLLDIGDIIIDGGN 102 (176)
T ss_dssp HHHHHHHHHHHHHCCTTCEEEECSC
T ss_pred HHHHHHHHHHHhccccCcEEEecCc
Confidence 8888888887766555566666543
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=94.46 E-value=0.033 Score=48.10 Aligned_cols=40 Identities=18% Similarity=0.276 Sum_probs=35.5
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHH
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMT 217 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~ 217 (512)
.|++-|.|+ |.+|.++|..|+++|++|.+.+|++++.+..
T Consensus 1 sk~iaIiGa-G~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~ 40 (184)
T d1bg6a2 1 SKTYAVLGL-GNGGHAFAAYLALKGQSVLAWDIDAQRIKEI 40 (184)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred CCEEEEECc-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 378899998 8999999999999999999999998876544
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=94.15 E-value=0.1 Score=45.82 Aligned_cols=48 Identities=13% Similarity=0.238 Sum_probs=40.8
Q ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHh
Q 010380 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLK 226 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~ 226 (512)
|+|.|.|+ |=+|..+|..++.+|++|++.+++++.++...+.+...+.
T Consensus 5 ~~vaViGa-G~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~ 52 (186)
T d1wdka3 5 KQAAVLGA-GIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLV 52 (186)
T ss_dssp SSEEEECC-HHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhhhhhHH
Confidence 45788888 7799999999999999999999999988887777665443
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.47 E-value=0.059 Score=45.88 Aligned_cols=40 Identities=25% Similarity=0.245 Sum_probs=34.9
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHH
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRM 216 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~ 216 (512)
.|++++|.|+ |++|...++.+...|++|+++++++++++.
T Consensus 27 ~g~~vlv~G~-G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~ 66 (168)
T d1rjwa2 27 PGEWVAIYGI-GGLGHVAVQYAKAMGLNVVAVDIGDEKLEL 66 (168)
T ss_dssp TTCEEEEECC-STTHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred CCCEEEEeec-ccchhhhhHHHhcCCCeEeccCCCHHHhhh
Confidence 5788999875 999999999999999999999999888754
|
| >d1p9oa_ c.72.3.1 (A:) Phosphopantothenoylcysteine synthetase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: CoaB-like family: CoaB-like domain: Phosphopantothenoylcysteine synthetase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.17 E-value=0.099 Score=49.47 Aligned_cols=26 Identities=31% Similarity=0.369 Sum_probs=22.4
Q ss_pred CCChHHHHHHHHHHHCCCEEEEEEcC
Q 010380 185 STRGLGKALAREFLLSGDRVVVASRS 210 (512)
Q Consensus 185 assGIG~aiA~~La~~Ga~Vvl~~R~ 210 (512)
.||-.|.++|++|..+|++|+++.+.
T Consensus 44 SSGk~G~alA~~~~~~Ga~V~li~g~ 69 (290)
T d1p9oa_ 44 SSGRRGATSAEAFLAAGYGVLFLYRA 69 (290)
T ss_dssp CCCHHHHHHHHHHHHTTCEEEEEEET
T ss_pred CchHHHHHHHHHHHHcCCEEEEEecC
Confidence 34578999999999999999998654
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.89 E-value=0.036 Score=46.90 Aligned_cols=37 Identities=11% Similarity=0.281 Sum_probs=33.5
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcC
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRS 210 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~ 210 (512)
.+++||++||.|| |.+|..-|+.|++.|++|++++..
T Consensus 9 ~~l~gkrvLViGg-G~va~~ka~~Ll~~GA~VtVvap~ 45 (150)
T d1kyqa1 9 HQLKDKRILLIGG-GEVGLTRLYKLMPTGCKLTLVSPD 45 (150)
T ss_dssp ECCTTCEEEEEEE-SHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred eeeCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4689999999999 669999999999999999999754
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=92.40 E-value=0.064 Score=43.99 Aligned_cols=58 Identities=22% Similarity=0.232 Sum_probs=43.5
Q ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhh
Q 010380 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPAD 257 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~s 257 (512)
|+++|.|. +.+|..+++.| +|.+|+++..+++..+.. .. ..+.++..|.++++.
T Consensus 1 kHivI~G~-g~~g~~l~~~L--~~~~i~vi~~d~~~~~~~----~~-------------------~~~~~i~Gd~~~~~~ 54 (129)
T d2fy8a1 1 RHVVICGW-SESTLECLREL--RGSEVFVLAEDENVRKKV----LR-------------------SGANFVHGDPTRVSD 54 (129)
T ss_dssp CCEEEESC-CHHHHHHHHTS--CGGGEEEEESCTTHHHHH----HH-------------------TTCEEEESCTTSHHH
T ss_pred CEEEEECC-CHHHHHHHHHH--cCCCCEEEEcchHHHHHH----Hh-------------------cCccccccccCCHHH
Confidence 57888885 78999999999 466788888888765432 22 245678899999887
Q ss_pred HHHH
Q 010380 258 VQKL 261 (512)
Q Consensus 258 v~~~ 261 (512)
++++
T Consensus 55 L~~a 58 (129)
T d2fy8a1 55 LEKA 58 (129)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 6653
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=92.30 E-value=1.6 Score=37.23 Aligned_cols=121 Identities=13% Similarity=0.168 Sum_probs=64.3
Q ss_pred EEEEECCCChHHHHHHHHHHHC-----CCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 179 NVVITGSTRGLGKALAREFLLS-----GDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 179 ~vLVTGassGIG~aiA~~La~~-----Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
.+.|.||++.....+...++.+ +.+|++.+.++++++.....+........ ...++. ...|
T Consensus 5 KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~-----------~~~~~~-~~~d-- 70 (167)
T d1u8xx1 5 SIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKA-----------PDIEFA-ATTD-- 70 (167)
T ss_dssp EEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHC-----------TTSEEE-EESC--
T ss_pred eEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhC-----------CCcceE-ecCC--
Confidence 4566677553322333333332 24899999999998766555544332210 111221 1112
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhh----------------hhHHHHHHHHHHH
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNL----------------VGSILCTREAMRV 317 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv----------------~g~~~l~k~~lp~ 317 (512)
.++ ....-|++|+.||.... ....-+..+..|+ +-..-..+.+.+.
T Consensus 71 ----~~e-------al~~AD~Vvitag~~~~-------~g~~rd~~i~~~~Gi~~~~t~g~gg~~~~~r~i~ii~~i~~~ 132 (167)
T d1u8xx1 71 ----PEE-------AFTDVDFVMAHIRVGKY-------AMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDY 132 (167)
T ss_dssp ----HHH-------HHSSCSEEEECCCTTHH-------HHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----hhh-------ccCCCCEEEECCCcCCC-------CceeHHHhhchhcCceeeccccCcchheehhhHHHHHHHHHH
Confidence 111 12368999999997541 1223333444442 1223455666777
Q ss_pred HHhCCCCCeEEeec
Q 010380 318 MRDQPKGGHIFNMD 331 (512)
Q Consensus 318 m~~~~~~g~IV~vS 331 (512)
+.+....+.++++|
T Consensus 133 i~~~~P~A~li~~T 146 (167)
T d1u8xx1 133 MEKYSPDAWMLNYS 146 (167)
T ss_dssp HHHHCTTCEEEECC
T ss_pred HHhhCCCeEEEEeC
Confidence 77766677888775
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=92.14 E-value=0.66 Score=38.98 Aligned_cols=35 Identities=17% Similarity=0.202 Sum_probs=26.6
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-------EEEEEEcCh
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSGD-------RVVVASRSS 211 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~Ga-------~Vvl~~R~~ 211 (512)
+-.|.|+||+|.+|.++|..|+..+. .+++.+.++
T Consensus 3 p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~ 44 (154)
T d5mdha1 3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITP 44 (154)
T ss_dssp CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGG
T ss_pred ceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCcc
Confidence 34689999999999999999987542 355555543
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=91.85 E-value=0.17 Score=43.04 Aligned_cols=39 Identities=26% Similarity=0.457 Sum_probs=32.5
Q ss_pred EEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHH
Q 010380 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVT 219 (512)
Q Consensus 180 vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~ 219 (512)
|-|.| .|-+|..+|+.|+++|++|++.+|++++.+++.+
T Consensus 3 IgiIG-lG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~ 41 (161)
T d1vpda2 3 VGFIG-LGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIA 41 (161)
T ss_dssp EEEEC-CSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred EEEEe-hhHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHH
Confidence 44555 5889999999999999999999999988766543
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=91.77 E-value=0.39 Score=41.40 Aligned_cols=79 Identities=19% Similarity=0.192 Sum_probs=56.1
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
..++-+|+|.|+ +--|++.++.....|++|.+.+.+.++++++.... . ..+. +-..
T Consensus 29 gv~pa~V~ViGa-GvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~----~----------------~~~~---~~~~ 84 (168)
T d1pjca1 29 GVKPGKVVILGG-GVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLF----G----------------SRVE---LLYS 84 (168)
T ss_dssp TBCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH----G----------------GGSE---EEEC
T ss_pred CCCCcEEEEECC-ChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhh----c----------------ccce---eehh
Confidence 346778999997 57899999999999999999999998876544332 1 1222 2344
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCC
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNK 283 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~ 283 (512)
+.+.+++.+. .-|++|.++=+..
T Consensus 85 ~~~~l~~~~~-------~aDivI~aalipG 107 (168)
T d1pjca1 85 NSAEIETAVA-------EADLLIGAVLVPG 107 (168)
T ss_dssp CHHHHHHHHH-------TCSEEEECCCCTT
T ss_pred hhhhHHHhhc-------cCcEEEEeeecCC
Confidence 5555554433 5799999998754
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.04 E-value=0.23 Score=42.73 Aligned_cols=41 Identities=20% Similarity=0.276 Sum_probs=36.7
Q ss_pred cCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhh
Q 010380 172 HCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSES 213 (512)
Q Consensus 172 ~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~ 213 (512)
...+.||+++|.| .|-||+.+|+.|...|++|+++..++-+
T Consensus 19 ~~~l~Gk~v~V~G-yG~iG~g~A~~~rg~G~~V~v~e~dp~~ 59 (163)
T d1li4a1 19 DVMIAGKVAVVAG-YGDVGKGCAQALRGFGARVIITEIDPIN 59 (163)
T ss_dssp CCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred CceecCCEEEEec-cccccHHHHHHHHhCCCeeEeeecccch
Confidence 4578999999998 4689999999999999999999998754
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=90.80 E-value=0.6 Score=37.24 Aligned_cols=86 Identities=15% Similarity=0.258 Sum_probs=60.5
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
...+.++.|.|| |-+|+-++....+.|++|++.+.+++.-. ...--.++..|..
T Consensus 8 ~~~~~kigIlGg-GQL~rMla~aA~~lG~~v~v~d~~~~~PA-------------------------~~va~~~i~~~~~ 61 (111)
T d1kjqa2 8 RPAATRVMLLGS-GELGKEVAIECQRLGVEVIAVDRYADAPA-------------------------MHVAHRSHVINML 61 (111)
T ss_dssp STTCCEEEEESC-SHHHHHHHHHHHTTTCEEEEEESSTTCGG-------------------------GGGSSEEEECCTT
T ss_pred CCCCCEEEEEeC-CHHHHHHHHHHHHCCCEEEEEcCCCCCch-------------------------hhcCCeEEECCCC
Confidence 345567999994 68999999999999999999998865311 0111245778999
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHH
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQI 299 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~ 299 (512)
|.+.+.+++... .+|++.. .+++++.+-+++.
T Consensus 62 d~~~l~~~~~~~-----~~DviT~---------E~EnI~~~~L~~l 93 (111)
T d1kjqa2 62 DGDALRRVVELE-----KPHYIVP---------EIEAIATDMLIQL 93 (111)
T ss_dssp CHHHHHHHHHHH-----CCSEEEE---------CSSCSCHHHHHHH
T ss_pred CHHHHHHHHHhh-----CCceEEE---------EecCcCHHHHHHH
Confidence 999988887653 5777721 2456666655544
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=90.68 E-value=0.51 Score=37.52 Aligned_cols=36 Identities=22% Similarity=0.429 Sum_probs=31.4
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChh
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSE 212 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~ 212 (512)
.+|.++|.|| |-+|.++|..|++.|.+|.++.|.+.
T Consensus 21 ~p~~v~IiGg-G~ig~E~A~~l~~~G~~Vtlve~~~~ 56 (117)
T d1ebda2 21 VPKSLVVIGG-GYIGIELGTAYANFGTKVTILEGAGE 56 (117)
T ss_dssp CCSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred cCCeEEEECC-CccceeeeeeecccccEEEEEEecce
Confidence 4578888886 68999999999999999999988754
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=90.48 E-value=0.21 Score=43.07 Aligned_cols=44 Identities=25% Similarity=0.412 Sum_probs=39.0
Q ss_pred cCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHH
Q 010380 172 HCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVR 215 (512)
Q Consensus 172 ~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~ 215 (512)
..++.||+++|.|-|.=+|+-++..|.++|++|.++......+.
T Consensus 32 ~i~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t~~l~ 75 (166)
T d1b0aa1 32 NIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLR 75 (166)
T ss_dssp TCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCSCHH
T ss_pred CcccccceEEEEeccccccHHHHHHHHHhhccccccccccchhH
Confidence 45789999999999999999999999999999999887765554
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.16 E-value=0.18 Score=43.69 Aligned_cols=44 Identities=14% Similarity=0.262 Sum_probs=39.4
Q ss_pred cCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHH
Q 010380 172 HCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVR 215 (512)
Q Consensus 172 ~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~ 215 (512)
..++.||+++|.|-|.=+|+-++..|+++|++|.++......+.
T Consensus 34 ~i~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t~~l~ 77 (170)
T d1a4ia1 34 GVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHLD 77 (170)
T ss_dssp TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHH
T ss_pred CcccccceEEEEecCCccchHHHHHHHhccCceEEEecccccHH
Confidence 45789999999999999999999999999999999988766553
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=90.10 E-value=0.43 Score=42.18 Aligned_cols=39 Identities=13% Similarity=0.152 Sum_probs=34.4
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChh
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSE 212 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~ 212 (512)
..+.||++.|.|- |.||+.+|+.|..-|++|+..++...
T Consensus 39 ~el~gk~vgIiG~-G~IG~~va~~l~~fg~~V~~~d~~~~ 77 (197)
T d1j4aa1 39 REVRDQVVGVVGT-GHIGQVFMQIMEGFGAKVITYDIFRN 77 (197)
T ss_dssp CCGGGSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred ccccCCeEEEecc-cccchhHHHhHhhhcccccccCcccc
Confidence 4588999999995 78999999999999999999987644
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=90.03 E-value=0.14 Score=43.09 Aligned_cols=34 Identities=18% Similarity=0.255 Sum_probs=30.8
Q ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhh
Q 010380 179 NVVITGSTRGLGKALAREFLLSGDRVVVASRSSES 213 (512)
Q Consensus 179 ~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~ 213 (512)
+|.|.|+ |.||..++..|++.|++|.+++|+++.
T Consensus 2 kI~IiGa-G~iG~~~a~~L~~~G~~V~~~~r~~~~ 35 (167)
T d1ks9a2 2 KITVLGC-GALGQLWLTALCKQGHEVQGWLRVPQP 35 (167)
T ss_dssp EEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCS
T ss_pred EEEEECc-CHHHHHHHHHHHHCCCceEEEEcCHHH
Confidence 4788888 999999999999999999999998754
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=89.80 E-value=0.95 Score=39.73 Aligned_cols=76 Identities=26% Similarity=0.271 Sum_probs=53.9
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEcc
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACD 251 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~D 251 (512)
-+++|++||=-|+..|. ++.+++.+|+ +|+.++.+++.++.+.+.++. .+.+..++..|
T Consensus 43 ~dl~g~~vLDlg~GtG~---l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~-----------------~~~~~~~~~~d 102 (201)
T d1wy7a1 43 GDIEGKVVADLGAGTGV---LSYGALLLGAKEVICVEVDKEAVDVLIENLGE-----------------FKGKFKVFIGD 102 (201)
T ss_dssp TSSTTCEEEEETCTTCH---HHHHHHHTTCSEEEEEESCHHHHHHHHHHTGG-----------------GTTSEEEEESC
T ss_pred CCCCCCEEEECcCcchH---HHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHH-----------------cCCCceEEECc
Confidence 36789999988887662 3334556786 899999998877766554432 34567778888
Q ss_pred CCChhhHHHHHHHHHHHcCCCccccccccc
Q 010380 252 VCEPADVQKLSNFAVNEFGSIDIWINNAGT 281 (512)
Q Consensus 252 ltd~~sv~~~~~~i~~~~g~IDvLInnAG~ 281 (512)
+.+. .+++|++|.|.-.
T Consensus 103 ~~~~-------------~~~fD~Vi~nPP~ 119 (201)
T d1wy7a1 103 VSEF-------------NSRVDIVIMNPPF 119 (201)
T ss_dssp GGGC-------------CCCCSEEEECCCC
T ss_pred hhhh-------------CCcCcEEEEcCcc
Confidence 7543 3579999988864
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=89.78 E-value=0.23 Score=42.70 Aligned_cols=36 Identities=19% Similarity=0.164 Sum_probs=31.7
Q ss_pred CCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHH
Q 010380 185 STRGLGKALAREFLLSGDRVVVASRSSESVRMTVTE 220 (512)
Q Consensus 185 assGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~e 220 (512)
|.|-+|.++|+.|+++|++|.+.+|++++.+++.++
T Consensus 8 GlG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~ 43 (178)
T d1pgja2 8 GLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKA 43 (178)
T ss_dssp CCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHH
T ss_pred eehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHc
Confidence 578899999999999999999999999987766554
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=89.44 E-value=0.81 Score=39.74 Aligned_cols=75 Identities=17% Similarity=-0.008 Sum_probs=54.2
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChh
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPA 256 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~ 256 (512)
+.+||=.||+.|. ++..|++.|++|+.++.+++.++.+.+.+.. .+..+..+..|..+..
T Consensus 38 ~~~ILDiGcG~G~---~~~~la~~~~~v~giD~S~~~i~~ak~~~~~-----------------~~~~~~~~~~d~~~l~ 97 (226)
T d1ve3a1 38 RGKVLDLACGVGG---FSFLLEDYGFEVVGVDISEDMIRKAREYAKS-----------------RESNVEFIVGDARKLS 97 (226)
T ss_dssp CCEEEEETCTTSH---HHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-----------------TTCCCEEEECCTTSCC
T ss_pred CCEEEEECCCcch---hhhhHhhhhcccccccccccchhhhhhhhcc-----------------cccccccccccccccc
Confidence 4568999998886 7778999999999999998887766655544 2345677778877643
Q ss_pred hHHHHHHHHHHHcCCCccccccccc
Q 010380 257 DVQKLSNFAVNEFGSIDIWINNAGT 281 (512)
Q Consensus 257 sv~~~~~~i~~~~g~IDvLInnAG~ 281 (512)
. ..+..|+++.+...
T Consensus 98 ~----------~~~~fD~I~~~~~l 112 (226)
T d1ve3a1 98 F----------EDKTFDYVIFIDSI 112 (226)
T ss_dssp S----------CTTCEEEEEEESCG
T ss_pred c----------cCcCceEEEEecch
Confidence 1 11478998876543
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=89.38 E-value=0.75 Score=40.97 Aligned_cols=75 Identities=23% Similarity=0.103 Sum_probs=55.6
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
..++++||=.|++.| .++..|+++|++|+.++.+++-++.+.+.+.+ .+.++.++..|+.
T Consensus 39 ~~~~~~iLDiGcGtG---~~~~~l~~~~~~v~gvD~s~~mi~~a~~~~~~-----------------~~~~i~~~~~d~~ 98 (251)
T d1wzna1 39 KREVRRVLDLACGTG---IPTLELAERGYEVVGLDLHEEMLRVARRKAKE-----------------RNLKIEFLQGDVL 98 (251)
T ss_dssp SSCCCEEEEETCTTC---HHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-----------------TTCCCEEEESCGG
T ss_pred CCCCCEEEEeCCCCC---ccchhhcccceEEEEEeecccccccccccccc-----------------ccccchheehhhh
Confidence 345678999999887 55678999999999999998877766665544 3457888999987
Q ss_pred ChhhHHHHHHHHHHHcCCCccccccc
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNA 279 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnA 279 (512)
+..- -+..|.+++.-
T Consensus 99 ~l~~-----------~~~fD~I~~~~ 113 (251)
T d1wzna1 99 EIAF-----------KNEFDAVTMFF 113 (251)
T ss_dssp GCCC-----------CSCEEEEEECS
T ss_pred hccc-----------ccccchHhhhh
Confidence 6431 13688877643
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.29 E-value=0.53 Score=40.98 Aligned_cols=41 Identities=17% Similarity=0.161 Sum_probs=35.3
Q ss_pred cCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhh
Q 010380 172 HCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSES 213 (512)
Q Consensus 172 ~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~ 213 (512)
...+.+|++.|.| .|.||+++|+.+..-|++|+..++...+
T Consensus 39 ~~~l~~k~vgiiG-~G~IG~~va~~~~~fg~~v~~~d~~~~~ 79 (184)
T d1ygya1 39 GTEIFGKTVGVVG-LGRIGQLVAQRIAAFGAYVVAYDPYVSP 79 (184)
T ss_dssp BCCCTTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEECTTSCH
T ss_pred cccccceeeeecc-ccchhHHHHHHhhhccceEEeecCCCCh
Confidence 3468899999998 5899999999999999999999987543
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=89.01 E-value=0.38 Score=43.24 Aligned_cols=76 Identities=9% Similarity=-0.057 Sum_probs=57.1
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
...+++||=.|++.|. ++..|+++|.+|+.++.+++-++.+.+.+.. .+.++.++..|+.
T Consensus 35 ~~~~~~vLDiGCG~G~---~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~~-----------------~~~~v~~~~~d~~ 94 (246)
T d1y8ca_ 35 NLVFDDYLDLACGTGN---LTENLCPKFKNTWAVDLSQEMLSEAENKFRS-----------------QGLKPRLACQDIS 94 (246)
T ss_dssp TCCTTEEEEETCTTST---THHHHGGGSSEEEEECSCHHHHHHHHHHHHH-----------------TTCCCEEECCCGG
T ss_pred CCCCCeEEEEeCcCCH---HHHHHHHhCCccEeeccchhhhhhccccccc-----------------cCccceeeccchh
Confidence 4567889999999885 7889999999999999999887766655543 3456888888887
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccc
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAG 280 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG 280 (512)
+.+ ..++.|++++.-+
T Consensus 95 ~~~-----------~~~~fD~i~~~~~ 110 (246)
T d1y8ca_ 95 NLN-----------INRKFDLITCCLD 110 (246)
T ss_dssp GCC-----------CSCCEEEEEECTT
T ss_pred hhc-----------ccccccccceeee
Confidence 643 1246898886443
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=88.99 E-value=0.39 Score=43.59 Aligned_cols=47 Identities=21% Similarity=0.292 Sum_probs=40.2
Q ss_pred cCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHH
Q 010380 172 HCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVT 219 (512)
Q Consensus 172 ~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~ 219 (512)
..+++||+++|-| .|.+|..+|+.|.+.|++|++++.+...++....
T Consensus 34 ~~~l~g~~v~IqG-~GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~~~ 80 (230)
T d1leha1 34 SDSLEGLAVSVQG-LGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVA 80 (230)
T ss_dssp SCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred CCCCCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEeecccHHHHHHHHH
Confidence 3468999999998 5789999999999999999999998877665444
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.64 E-value=0.68 Score=37.33 Aligned_cols=34 Identities=21% Similarity=0.284 Sum_probs=30.5
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcCh
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSGDRVVVASRSS 211 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~ 211 (512)
+|.++|.|| |-||.++|..|++.|.+|.++.|++
T Consensus 22 pk~vvIvGg-G~iG~E~A~~l~~~G~~Vtlv~~~~ 55 (125)
T d3grsa2 22 PGRSVIVGA-GYIAVEMAGILSALGSKTSLMIRHD 55 (125)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCEEEEEcC-CccHHHHHHHHhcCCcEEEEEeecc
Confidence 578899987 4799999999999999999999974
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=88.05 E-value=3.3 Score=35.08 Aligned_cols=123 Identities=14% Similarity=0.111 Sum_probs=66.0
Q ss_pred EEEEECCCC-hHHHHHHHHHHHC----CCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCC
Q 010380 179 NVVITGSTR-GLGKALAREFLLS----GDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVC 253 (512)
Q Consensus 179 ~vLVTGass-GIG~aiA~~La~~----Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dlt 253 (512)
.+.|.||.+ |...++...++.. +.++++.+.++++++.....+...... .+....+... +
T Consensus 4 KI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~-------------~~~~~~i~~~--t 68 (171)
T d1obba1 4 KIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEE-------------VGADLKFEKT--M 68 (171)
T ss_dssp EEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHH-------------TTCCCEEEEE--S
T ss_pred EEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHh-------------cCCCeEEEEe--C
Confidence 456777622 3444555556543 459999999999887766655553322 1122222211 2
Q ss_pred ChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHH-----------hhhh---------hHHHHHHH
Q 010380 254 EPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVS-----------TNLV---------GSILCTRE 313 (512)
Q Consensus 254 d~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~-----------vNv~---------g~~~l~k~ 313 (512)
| .++. ....|++|+++++.. ....+.+ ..-.+. .+.. -..-+.+.
T Consensus 69 d---~~ea-------L~dad~Vv~~~~~g~----~~~~~~~-~~i~~~~g~~~~~~~~~~~~~g~~~~~~~~rn~~i~~~ 133 (171)
T d1obba1 69 N---LDDV-------IIDADFVINTAMVGG----HTYLEKV-RQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVD 133 (171)
T ss_dssp C---HHHH-------HTTCSEEEECCCTTH----HHHHHHH-HHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHH
T ss_pred C---hhhc-------ccCCCeEeeeccccc----ccceeee-hhcchhhhhccCCCccccCCCCCcceeeecchHHHHHH
Confidence 2 2222 236799999988753 1110000 000110 1122 25567778
Q ss_pred HHHHHHhCCCCCeEEeec
Q 010380 314 AMRVMRDQPKGGHIFNMD 331 (512)
Q Consensus 314 ~lp~m~~~~~~g~IV~vS 331 (512)
+.+.+.+....+.++++|
T Consensus 134 i~~~i~~~~p~a~~i~~T 151 (171)
T d1obba1 134 IARKIEKLSPKAWYLQAA 151 (171)
T ss_dssp HHHHHHHHCTTCEEEECS
T ss_pred HHHHHHHHCcCeEEEEEC
Confidence 888888776677888875
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=87.86 E-value=0.34 Score=42.88 Aligned_cols=71 Identities=27% Similarity=0.366 Sum_probs=50.8
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
++.||+||=-|+.+|+ ++..++..|+ +|+.++.+++.++.+.+. ..++.++.+|+
T Consensus 46 dl~Gk~VLDlGcGtG~---l~i~a~~~ga~~V~~vDid~~a~~~ar~N---------------------~~~~~~~~~D~ 101 (197)
T d1ne2a_ 46 NIGGRSVIDAGTGNGI---LACGSYLLGAESVTAFDIDPDAIETAKRN---------------------CGGVNFMVADV 101 (197)
T ss_dssp SSBTSEEEEETCTTCH---HHHHHHHTTBSEEEEEESCHHHHHHHHHH---------------------CTTSEEEECCG
T ss_pred CCCCCEEEEeCCCCcH---HHHHHHHcCCCcccccccCHHHHHHHHHc---------------------cccccEEEEeh
Confidence 6789999999998883 3445777886 699999998766543322 13467788888
Q ss_pred CChhhHHHHHHHHHHHcCCCccccccccc
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINNAGT 281 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInnAG~ 281 (512)
.+. .+++|++|.|.-.
T Consensus 102 ~~l-------------~~~fD~Vi~NPPf 117 (197)
T d1ne2a_ 102 SEI-------------SGKYDTWIMNPPF 117 (197)
T ss_dssp GGC-------------CCCEEEEEECCCC
T ss_pred hhc-------------CCcceEEEeCccc
Confidence 543 2579999988643
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=87.75 E-value=0.69 Score=40.60 Aligned_cols=40 Identities=18% Similarity=0.101 Sum_probs=34.9
Q ss_pred cCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChh
Q 010380 172 HCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSE 212 (512)
Q Consensus 172 ~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~ 212 (512)
...+.||++.|.|. |.||+++|+.+..-|++|+..++...
T Consensus 44 ~~eL~gktvgIiG~-G~IG~~va~~l~~fg~~v~~~d~~~~ 83 (193)
T d1mx3a1 44 AARIRGETLGIIGL-GRVGQAVALRAKAFGFNVLFYDPYLS 83 (193)
T ss_dssp CCCCTTCEEEEECC-SHHHHHHHHHHHTTTCEEEEECTTSC
T ss_pred ceeeeCceEEEecc-ccccccceeeeeccccceeeccCccc
Confidence 35689999999975 78999999999999999999988643
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=87.73 E-value=0.44 Score=38.51 Aligned_cols=36 Identities=31% Similarity=0.380 Sum_probs=31.3
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcCh
Q 010380 175 AGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSS 211 (512)
Q Consensus 175 l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~ 211 (512)
.++|+++|.|| |-+|.++|..|++.|.+|.++.+.+
T Consensus 28 ~~~k~vvViGg-G~iG~E~A~~l~~~g~~Vtlie~~~ 63 (123)
T d1nhpa2 28 PEVNNVVVIGS-GYIGIEAAEAFAKAGKKVTVIDILD 63 (123)
T ss_dssp TTCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred cCCCEEEEECC-hHHHHHHHHHhhccceEEEEEEecC
Confidence 45788888875 6999999999999999999998864
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=87.72 E-value=0.37 Score=42.59 Aligned_cols=35 Identities=26% Similarity=0.286 Sum_probs=30.3
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcCh
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSS 211 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~ 211 (512)
..|.|+|.|| |=.|+.+|..|+++|++|.++.|+.
T Consensus 5 ~~~kVvVIGa-GiaGl~~A~~L~~~G~~V~vier~~ 39 (268)
T d1c0pa1 5 SQKRVVVLGS-GVIGLSSALILARKGYSVHILARDL 39 (268)
T ss_dssp CSCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCCcEEEECc-cHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 4567889986 5789999999999999999999863
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=87.70 E-value=0.88 Score=37.77 Aligned_cols=38 Identities=24% Similarity=0.331 Sum_probs=29.6
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChh
Q 010380 175 AGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSE 212 (512)
Q Consensus 175 l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~ 212 (512)
+.+.+++|-.+++-||.++|..|+++|++|.++.+.+.
T Consensus 38 ~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~ 75 (156)
T d1djqa2 38 IGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHL 75 (156)
T ss_dssp CCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCT
T ss_pred cCCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCc
Confidence 33344444456688999999999999999999988743
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=87.65 E-value=0.38 Score=40.27 Aligned_cols=39 Identities=23% Similarity=0.330 Sum_probs=32.3
Q ss_pred EEEECCCChHHHHHHHHHHHCC-CEEEEEEcChhhHHHHHH
Q 010380 180 VVITGSTRGLGKALAREFLLSG-DRVVVASRSSESVRMTVT 219 (512)
Q Consensus 180 vLVTGassGIG~aiA~~La~~G-a~Vvl~~R~~~~l~~~~~ 219 (512)
+.+.|+ |-+|.++++.|++.| ++|++.+|++++++.+.+
T Consensus 3 I~fIG~-G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~ 42 (152)
T d1yqga2 3 VYFLGG-GNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEK 42 (152)
T ss_dssp EEEECC-SHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHH
T ss_pred EEEEcC-cHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhh
Confidence 556666 899999999999888 899999999988765544
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=87.59 E-value=0.47 Score=40.05 Aligned_cols=39 Identities=26% Similarity=0.335 Sum_probs=32.5
Q ss_pred CEEEEECCCChHHHHHHHHHHHCCC--EEEEEEcChhhHHHH
Q 010380 178 RNVVITGSTRGLGKALAREFLLSGD--RVVVASRSSESVRMT 217 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~Ga--~Vvl~~R~~~~l~~~ 217 (512)
|+++|.|. |-||..+|+.|.+.|+ +|+..+++++.++.+
T Consensus 2 k~I~IIG~-G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a 42 (171)
T d2g5ca2 2 QNVLIVGV-GFMGGSFAKSLRRSGFKGKIYGYDINPESISKA 42 (171)
T ss_dssp CEEEEESC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHH
T ss_pred CEEEEEcc-CHHHHHHHHHHHhcCCCeEEEEEECChHHHHHH
Confidence 46888875 8999999999999995 788899998776544
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.56 E-value=0.58 Score=41.65 Aligned_cols=43 Identities=19% Similarity=0.073 Sum_probs=35.8
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHH
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTEL 221 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el 221 (512)
.++.||.-|+..| ..+..|+++|++|+.++-++..++.+.++.
T Consensus 45 ~~~rvLd~GCG~G---~~a~~LA~~G~~V~gvD~S~~ai~~a~~~~ 87 (229)
T d2bzga1 45 SGLRVFFPLCGKA---VEMKWFADRGHSVVGVEISELGIQEFFTEQ 87 (229)
T ss_dssp CSCEEEETTCTTC---THHHHHHHTTCEEEEECSCHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCc---HHHHHHHhCCCcEEEEeCCHHHHHHHHHHh
Confidence 5778999999887 668899999999999999998776655543
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.52 E-value=0.82 Score=36.77 Aligned_cols=34 Identities=24% Similarity=0.187 Sum_probs=29.5
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcC
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRS 210 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~ 210 (512)
.+|.++|.|| |-||.++|..|.+.|.+|.++.|+
T Consensus 19 ~P~~vvIIGg-G~iG~E~A~~l~~lG~~Vtii~~~ 52 (122)
T d1h6va2 19 CPGKTLVVGA-SYVALECAGFLAGIGLDVTVMVRS 52 (122)
T ss_dssp CCCSEEEECC-SHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCeEEEECC-CccHHHHHHHHhhcCCeEEEEEec
Confidence 3467788886 689999999999999999999886
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.43 E-value=0.19 Score=50.10 Aligned_cols=35 Identities=29% Similarity=0.443 Sum_probs=30.4
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcC
Q 010380 175 AGPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRS 210 (512)
Q Consensus 175 l~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~ 210 (512)
+++..|+|.|+ ||||.++++.|+..|. ++.+++.+
T Consensus 35 l~~~kVlvvG~-GglG~ei~k~L~~~Gvg~i~lvD~D 70 (426)
T d1yovb1 35 LDTCKVLVIGA-GGLGCELLKNLALSGFRQIHVIDMD 70 (426)
T ss_dssp HHHCCEEEECS-STTHHHHHHHHHTTTCCCEEEECCC
T ss_pred HhcCeEEEECC-CHHHHHHHHHHHHcCCCeEEEEECC
Confidence 45567999998 7899999999999997 79999875
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=87.34 E-value=0.36 Score=38.79 Aligned_cols=36 Identities=19% Similarity=0.252 Sum_probs=31.3
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcCh
Q 010380 175 AGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSS 211 (512)
Q Consensus 175 l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~ 211 (512)
--++.++|.|| |-||.++|..|++.|.+|.++.|++
T Consensus 20 ~~p~~i~IiG~-G~ig~E~A~~l~~~G~~Vtiv~~~~ 55 (119)
T d3lada2 20 NVPGKLGVIGA-GVIGLELGSVWARLGAEVTVLEAMD 55 (119)
T ss_dssp SCCSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred cCCCeEEEECC-ChHHHHHHHHHHHcCCceEEEEeec
Confidence 34688899986 6899999999999999999998864
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.19 E-value=1.1 Score=35.84 Aligned_cols=35 Identities=20% Similarity=0.328 Sum_probs=30.7
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcCh
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSS 211 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~ 211 (512)
-+|.++|.|| |-||.++|..|++.|.+|.++.|++
T Consensus 22 ~p~~~vIiG~-G~ig~E~A~~l~~lG~~Vtii~~~~ 56 (122)
T d1v59a2 22 IPKRLTIIGG-GIIGLEMGSVYSRLGSKVTVVEFQP 56 (122)
T ss_dssp CCSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCCeEEEECC-CchHHHHHHHHHhhCcceeEEEecc
Confidence 3578899986 6899999999999999999998864
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.62 E-value=0.39 Score=41.59 Aligned_cols=39 Identities=13% Similarity=0.164 Sum_probs=35.7
Q ss_pred cCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcC
Q 010380 172 HCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRS 210 (512)
Q Consensus 172 ~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~ 210 (512)
-.+++||+++|.|-|.=+|+-+|..|+++|+.|..+..+
T Consensus 24 g~~l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~ 62 (171)
T d1edza1 24 GNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVN 62 (171)
T ss_dssp TCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSS
T ss_pred cCCCCCCEEEEECCccccHHHHHHHHHHCCCEEEEeccc
Confidence 348999999999999999999999999999999988765
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=86.60 E-value=0.48 Score=38.22 Aligned_cols=36 Identities=19% Similarity=0.247 Sum_probs=31.4
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChh
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSE 212 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~ 212 (512)
.+|+++|.|| |-+|.++|..|+++|.+|.++.+.+.
T Consensus 29 ~~~~vvIIGg-G~iG~E~A~~l~~~g~~Vtli~~~~~ 64 (121)
T d1d7ya2 29 PQSRLLIVGG-GVIGLELAATARTAGVHVSLVETQPR 64 (121)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred cCCeEEEECc-chhHHHHHHHhhcccceEEEEeeccc
Confidence 4578888886 79999999999999999999998754
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=86.48 E-value=0.77 Score=36.78 Aligned_cols=35 Identities=23% Similarity=0.302 Sum_probs=29.8
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChh
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSE 212 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~ 212 (512)
+|.++|.|| |-+|.++|..|++.|.+|.++.|++.
T Consensus 32 ~~~vvIiGg-G~iG~E~A~~l~~~g~~Vtlv~~~~~ 66 (122)
T d1xhca2 32 SGEAIIIGG-GFIGLELAGNLAEAGYHVKLIHRGAM 66 (122)
T ss_dssp HSEEEEEEC-SHHHHHHHHHHHHTTCEEEEECSSSC
T ss_pred CCcEEEECC-cHHHHHHHHHhhcccceEEEEecccc
Confidence 366788775 78999999999999999999988743
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.46 E-value=0.6 Score=38.65 Aligned_cols=76 Identities=14% Similarity=0.270 Sum_probs=51.2
Q ss_pred EEEEECCCChHHHHHHHHHHHC-CCEEEE-EEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChh
Q 010380 179 NVVITGSTRGLGKALAREFLLS-GDRVVV-ASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPA 256 (512)
Q Consensus 179 ~vLVTGassGIG~aiA~~La~~-Ga~Vvl-~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~ 256 (512)
.|.|.|++|-+|+++++...+. +++++. +++.. .+.. +.. .+.. +..|+|.++
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~-~~~~----~~~-----------------~~~D---vvIDFS~p~ 55 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGD-PLSL----LTD-----------------GNTE---VVIDFTHPD 55 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTC-CTHH----HHT-----------------TTCS---EEEECCCTT
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCC-chhh----hcc-----------------ccCC---EEEEcccHH
Confidence 4789999999999999997765 467654 34432 2211 111 1112 567999999
Q ss_pred hHHHHHHHHHHHcCCCccccccccc
Q 010380 257 DVQKLSNFAVNEFGSIDIWINNAGT 281 (512)
Q Consensus 257 sv~~~~~~i~~~~g~IDvLInnAG~ 281 (512)
.+.+.++.+.+. ++-+||-..|.
T Consensus 56 ~~~~~~~~~~~~--~~~~ViGTTG~ 78 (135)
T d1yl7a1 56 VVMGNLEFLIDN--GIHAVVGTTGF 78 (135)
T ss_dssp THHHHHHHHHHT--TCEEEECCCCC
T ss_pred HHHHHHHHHHhc--CCCEEEecccc
Confidence 999999988765 56667655554
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=86.43 E-value=0.74 Score=40.05 Aligned_cols=39 Identities=13% Similarity=0.080 Sum_probs=34.3
Q ss_pred cCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcCh
Q 010380 172 HCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSS 211 (512)
Q Consensus 172 ~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~ 211 (512)
..++.++++.|.|. |.||+++|+.|..-|.+|+..++..
T Consensus 39 ~~~l~~~~vgiiG~-G~IG~~va~~l~~fg~~v~~~d~~~ 77 (188)
T d2naca1 39 AYDLEAMHVGTVAA-GRIGLAVLRRLAPFDVHLHYTDRHR 77 (188)
T ss_dssp CCCCTTCEEEEECC-SHHHHHHHHHHGGGTCEEEEECSSC
T ss_pred ceeccccceeeccc-cccchhhhhhhhccCceEEEEeecc
Confidence 45688999999994 7899999999999999999999864
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=86.35 E-value=1.2 Score=35.43 Aligned_cols=34 Identities=18% Similarity=0.175 Sum_probs=30.1
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcCh
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSGDRVVVASRSS 211 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~ 211 (512)
+|.++|.|| |-+|.++|..|++.|.+|.++.|.+
T Consensus 22 p~~v~IiGg-G~iG~E~A~~l~~~g~~Vtlv~~~~ 55 (117)
T d1onfa2 22 SKKIGIVGS-GYIAVELINVIKRLGIDSYIFARGN 55 (117)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHTTTCEEEEECSSS
T ss_pred CCEEEEECC-chHHHHHHHHHHhccccceeeehhc
Confidence 578888886 6899999999999999999999864
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=86.30 E-value=0.49 Score=40.00 Aligned_cols=38 Identities=18% Similarity=0.237 Sum_probs=31.6
Q ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHH
Q 010380 179 NVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMT 217 (512)
Q Consensus 179 ~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~ 217 (512)
+|-|.| .|-+|.++|+.|+++|++|.+.+|+.++.+.+
T Consensus 3 kIg~IG-lG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~ 40 (162)
T d3cuma2 3 QIAFIG-LGHMGAPMATNLLKAGYLLNVFDLVQSAVDGL 40 (162)
T ss_dssp EEEEEC-CSTTHHHHHHHHHHTTCEEEEECSSHHHHHHH
T ss_pred EEEEEE-EHHHHHHHHHHHHHCCCeEEEEECchhhhhhh
Confidence 455664 58899999999999999999999998776543
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=86.10 E-value=0.42 Score=40.11 Aligned_cols=40 Identities=10% Similarity=0.200 Sum_probs=32.5
Q ss_pred EEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHH
Q 010380 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTE 220 (512)
Q Consensus 180 vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~e 220 (512)
+.|. |.|-+|.++++.|.+.|++|++.+|+.++.+++.++
T Consensus 3 Ig~I-G~G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~ 42 (152)
T d2ahra2 3 IGII-GVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQ 42 (152)
T ss_dssp EEEE-CCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHH
T ss_pred EEEE-eccHHHHHHHHHHHhCCCeEEEEcChHHhHHhhccc
Confidence 3444 468899999999999999999999998877655443
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=86.04 E-value=0.32 Score=38.92 Aligned_cols=34 Identities=18% Similarity=0.209 Sum_probs=29.8
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcCh
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSGDRVVVASRSS 211 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~ 211 (512)
+|.++|.|| |-+|.++|..|++.|.+|.++.|.+
T Consensus 21 p~~vvIiGg-G~ig~E~A~~l~~~G~~Vtlve~~~ 54 (116)
T d1gesa2 21 PERVAVVGA-GYIGVELGGVINGLGAKTHLFEMFD 54 (116)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCEEEEECC-ChhhHHHHHHhhccccEEEEEeecc
Confidence 567888875 6899999999999999999998864
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=85.83 E-value=0.89 Score=37.13 Aligned_cols=73 Identities=14% Similarity=0.248 Sum_probs=53.7
Q ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEE-EcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCChhh
Q 010380 179 NVVITGSTRGLGKALAREFLLSGDRVVVA-SRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCEPAD 257 (512)
Q Consensus 179 ~vLVTGassGIG~aiA~~La~~Ga~Vvl~-~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd~~s 257 (512)
.+.|.|++|-+|+++++.+.++|+.++.. +++.... ..... +..|+|.++.
T Consensus 2 ki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~~~~~-------------------------~~~~D---VvIDFS~p~~ 53 (128)
T d1vm6a3 2 KYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNGVEE-------------------------LDSPD---VVIDFSSPEA 53 (128)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTEEEE-------------------------CSCCS---EEEECSCGGG
T ss_pred EEEEECCCCHHHHHHHHHHhcCCCeEEEEECCCcHHH-------------------------hccCC---EEEEecCHHH
Confidence 47999999999999999999999987654 4432210 01122 4679999999
Q ss_pred HHHHHHHHHHHcCCCccccccccc
Q 010380 258 VQKLSNFAVNEFGSIDIWINNAGT 281 (512)
Q Consensus 258 v~~~~~~i~~~~g~IDvLInnAG~ 281 (512)
+.+.++.+.+. ++-+|+-..|.
T Consensus 54 ~~~~l~~~~~~--~~p~ViGTTG~ 75 (128)
T d1vm6a3 54 LPKTVDLCKKY--RAGLVLGTTAL 75 (128)
T ss_dssp HHHHHHHHHHH--TCEEEECCCSC
T ss_pred HHHHHHHHHhc--CCCEEEEcCCC
Confidence 99999988776 56677766664
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=85.57 E-value=0.47 Score=42.93 Aligned_cols=36 Identities=22% Similarity=0.277 Sum_probs=31.6
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRS 210 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~ 210 (512)
++++++|+|.| .||+|..++..|++.|. ++.+++.+
T Consensus 27 kL~~~~VliiG-~GglGs~va~~La~~Gvg~i~lvD~D 63 (247)
T d1jw9b_ 27 ALKDSRVLIVG-LGGLGCAASQYLASAGVGNLTLLDFD 63 (247)
T ss_dssp HHHHCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred HHhCCCEEEEC-CCHHHHHHHHHHHHcCCCeEEEECCc
Confidence 46778999999 58999999999999997 89998864
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=84.97 E-value=1.6 Score=39.77 Aligned_cols=73 Identities=14% Similarity=0.124 Sum_probs=52.2
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccCCC
Q 010380 175 AGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDVCE 254 (512)
Q Consensus 175 l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dltd 254 (512)
..|++||=.|+.+|+ ++..+++.|++|+.++.++..++.+.+..+. .+.++.++..|+.+
T Consensus 119 ~~g~~VLDiGcGsG~---l~i~aa~~g~~V~gvDis~~av~~A~~na~~-----------------n~~~~~~~~~d~~~ 178 (254)
T d2nxca1 119 RPGDKVLDLGTGSGV---LAIAAEKLGGKALGVDIDPMVLPQAEANAKR-----------------NGVRPRFLEGSLEA 178 (254)
T ss_dssp CTTCEEEEETCTTSH---HHHHHHHTTCEEEEEESCGGGHHHHHHHHHH-----------------TTCCCEEEESCHHH
T ss_pred CccCEEEEcccchhH---HHHHHHhcCCEEEEEECChHHHHHHHHHHHH-----------------cCCceeEEeccccc
Confidence 468899999999986 3345778899999999999998877766544 23445566666421
Q ss_pred hhhHHHHHHHHHHHcCCCcccccc
Q 010380 255 PADVQKLSNFAVNEFGSIDIWINN 278 (512)
Q Consensus 255 ~~sv~~~~~~i~~~~g~IDvLInn 278 (512)
. ...++.|+++.|
T Consensus 179 ------~-----~~~~~fD~V~an 191 (254)
T d2nxca1 179 ------A-----LPFGPFDLLVAN 191 (254)
T ss_dssp ------H-----GGGCCEEEEEEE
T ss_pred ------c-----ccccccchhhhc
Confidence 1 123679999876
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=84.92 E-value=0.27 Score=39.87 Aligned_cols=36 Identities=25% Similarity=0.362 Sum_probs=31.4
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChh
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSE 212 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~ 212 (512)
-+|.++|.|| |-||.++|..|.+.|.+|.++.|++.
T Consensus 24 ~p~~~viiG~-G~iglE~A~~~~~~G~~Vtvi~~~~~ 59 (123)
T d1dxla2 24 IPKKLVVIGA-GYIGLEMGSVWGRIGSEVTVVEFASE 59 (123)
T ss_dssp CCSEEEESCC-SHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred cCCeEEEEcc-chHHHHHHHHHHhcCCeEEEEEEccc
Confidence 3578888886 68999999999999999999988753
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=84.81 E-value=1.7 Score=38.06 Aligned_cols=105 Identities=14% Similarity=0.173 Sum_probs=64.2
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHH------HHHHHHHHHhhhhhhcCCCCcccccCceEE
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRM------TVTELEENLKEGMMAAGGSSKKNLVHAKVA 246 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~------~~~el~~~~~~~~~~~g~~~~~~~~g~~v~ 246 (512)
..+.+|++.|.|. |.||+++|+.|..-|++|+..++....... ..+++.+ ...+.
T Consensus 41 ~~l~~ktvgIiG~-G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~l~~l~~------------------~~D~v 101 (199)
T d1dxya1 41 KELGQQTVGVMGT-GHIGQVAIKLFKGFGAKVIAYDPYPMKGDHPDFDYVSLEDLFK------------------QSDVI 101 (199)
T ss_dssp CCGGGSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCSSCCTTCEECCHHHHHH------------------HCSEE
T ss_pred ccccceeeeeeec-ccccccccccccccceeeeccCCccchhhhcchhHHHHHHHHH------------------hcccc
Confidence 4678999999995 789999999999999999999886432110 1112211 14667
Q ss_pred EEEccCCChhhHHHHHH-HHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhh
Q 010380 247 GIACDVCEPADVQKLSN-FAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLV 305 (512)
Q Consensus 247 ~v~~Dltd~~sv~~~~~-~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~ 305 (512)
.+.+-+++.. +.+++ +..+.. +-+.++-|+|.+. + ++.+++.+.++-+-+
T Consensus 102 ~~~~plt~~T--~~li~~~~l~~m-k~~a~lIN~aRG~----v--vde~aL~~aL~~g~i 152 (199)
T d1dxya1 102 DLHVPGIEQN--THIINEAAFNLM-KPGAIVINTARPN----L--IDTQAMLSNLKSGKL 152 (199)
T ss_dssp EECCCCCGGG--TTSBCHHHHHHS-CTTEEEEECSCTT----S--BCHHHHHHHHHTTSE
T ss_pred eeeecccccc--cccccHHHhhcc-CCceEEEecccHh----h--hhhHHHHHHHhcCCc
Confidence 7777776543 12221 122222 4455666666532 2 566777777666544
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=84.18 E-value=0.54 Score=41.09 Aligned_cols=38 Identities=32% Similarity=0.359 Sum_probs=32.1
Q ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHH
Q 010380 178 RNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRM 216 (512)
Q Consensus 178 k~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~ 216 (512)
+.|.|.|| |-.|.++|..|++.|++|.+.+|+++..+.
T Consensus 8 ~KI~ViGa-G~wGtAlA~~La~~g~~V~l~~r~~~~~~~ 45 (189)
T d1n1ea2 8 NKAVVFGS-GAFGTALAMVLSKKCREVCVWHMNEEEVRL 45 (189)
T ss_dssp EEEEEECC-SHHHHHHHHHHHTTEEEEEEECSCHHHHHH
T ss_pred ceEEEECC-CHHHHHHHHHHHHcCCeEEEEEecHHHHHH
Confidence 45788886 569999999999999999999999876543
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=84.16 E-value=3.4 Score=34.96 Aligned_cols=34 Identities=3% Similarity=-0.052 Sum_probs=24.0
Q ss_pred EEEECC-CChHHHHHHHHHHHCC----CEEEEEEcChhh
Q 010380 180 VVITGS-TRGLGKALAREFLLSG----DRVVVASRSSES 213 (512)
Q Consensus 180 vLVTGa-ssGIG~aiA~~La~~G----a~Vvl~~R~~~~ 213 (512)
+.|.|| +.|.+..++.-+...- .++++.+.++++
T Consensus 4 I~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~ 42 (169)
T d1s6ya1 4 IATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGK 42 (169)
T ss_dssp EEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGH
T ss_pred EEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccH
Confidence 556665 6677777777666532 489999998765
|
| >d2fr1a2 c.2.1.2 (A:1448-1656) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=83.99 E-value=8.1 Score=33.00 Aligned_cols=144 Identities=10% Similarity=0.108 Sum_probs=75.7
Q ss_pred CCCCCEEEEECCC--ChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEcc
Q 010380 174 KAGPRNVVITGST--RGLGKALAREFLLSGDRVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACD 251 (512)
Q Consensus 174 ~l~gk~vLVTGas--sGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~D 251 (512)
...+++++|.... ..+..+++..|...|..|+.+.-+..
T Consensus 22 ~~~g~~lv~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~--------------------------------------- 62 (209)
T d2fr1a2 22 RLDGTWLVAKYAGTADETSTAAREALESAGARVRELVVDAR--------------------------------------- 62 (209)
T ss_dssp CCCSEEEEEECTTSSHHHHHHHHHHHHTTSCEEEEEECCTT---------------------------------------
T ss_pred CCCCcEEEEeCCCCchHHHHHHHHHHHhCCCeEEEecCCCc---------------------------------------
Confidence 3455555555332 34677788888888887776543321
Q ss_pred CCChhhHHHHHHHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCeEEeec
Q 010380 252 VCEPADVQKLSNFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLVGSILCTREAMRVMRDQPKGGHIFNMD 331 (512)
Q Consensus 252 ltd~~sv~~~~~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~g~~~l~k~~lp~m~~~~~~g~IV~vS 331 (512)
.+ ...+.+ .....+.++.+|+-.+....... ..+. . ...+...+.+.|.+. +.....++.+++
T Consensus 63 -~~---~~~l~~-~~~~~~~~~~vv~l~~~~~~~~~--~~~~--~----~~~~~~~l~l~qal~----~~~~~~~l~~vT 125 (209)
T d2fr1a2 63 -CG---RDELAE-RLRSVGEVAGVLSLLAVDEAEPE--EAPL--A----LASLADTLSLVQAMV----SAELGCPLWTVT 125 (209)
T ss_dssp -CC---HHHHHH-HHTTSCCCSEEEECTTTTCCCCS--SCGG--G----CHHHHHHHHHHHHHH----HTTCCCCEEEEE
T ss_pred -cC---HHHHHH-HhhccCCCCeEEEeCCCCCCCCc--chhH--H----HHHHHHHHHHHHHHH----hCCCCCcEEEEE
Confidence 11 122222 22344678888887665331111 1111 0 112344455555543 232345666665
Q ss_pred CCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHhCCCCeEEEEEe
Q 010380 332 GAGSGGSSTPLTAVYGSTKCGLRQLQASLFKESKRSKVGVHTAS 375 (512)
Q Consensus 332 S~~a~~~~~p~~~~Y~aSKaAl~~l~~sLa~El~~~GIrVn~V~ 375 (512)
...... .+....-....+++-+|.++++.|+....+++..+.
T Consensus 126 ~~a~~~--~~~d~~~~p~~A~l~Gl~r~~~~E~P~l~~~~vDl~ 167 (209)
T d2fr1a2 126 ESAVAT--GPFERVRNAAHGALWGVGRVIALENPAVWGGLVDVP 167 (209)
T ss_dssp ESCSCS--STTSCCSCGGGHHHHHHHHHHHHHCGGGEEEEEEEC
T ss_pred cCCccc--CCCcccCCHhHHhHHHHHHHHHHhCCCceEEEEECC
Confidence 431111 122223345678899999999999986555555553
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=83.62 E-value=0.52 Score=41.83 Aligned_cols=34 Identities=24% Similarity=0.278 Sum_probs=28.8
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcCh
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSGDRVVVASRSS 211 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~ 211 (512)
+|.|+|.|| |-=|+..|.+|+++|++|.++.+++
T Consensus 1 ~KkV~IIGa-G~aGL~aA~~La~~G~~V~vlE~~~ 34 (373)
T d1seza1 1 AKRVAVIGA-GVSGLAAAYKLKIHGLNVTVFEAEG 34 (373)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred CCEEEEECc-CHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 578888886 5678999999999999999997653
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=83.51 E-value=0.46 Score=37.76 Aligned_cols=35 Identities=23% Similarity=0.359 Sum_probs=30.0
Q ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcCh
Q 010380 176 GPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSS 211 (512)
Q Consensus 176 ~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~ 211 (512)
.+|.++|.|| |-+|.++|..|++.|.+|.++.|.+
T Consensus 20 ~p~~vvIiGg-G~~G~E~A~~l~~~g~~Vtlve~~~ 54 (115)
T d1lvla2 20 LPQHLVVVGG-GYIGLELGIAYRKLGAQVSVVEARE 54 (115)
T ss_dssp CCSEEEEECC-SHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred CCCeEEEECC-CHHHHHHHHHHhhcccceEEEeeec
Confidence 3577888875 7899999999999999999998863
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=82.92 E-value=2 Score=37.27 Aligned_cols=42 Identities=14% Similarity=0.109 Sum_probs=35.3
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHH
Q 010380 175 AGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMT 217 (512)
Q Consensus 175 l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~ 217 (512)
..+-.|+|.|| +-.|+..++.....|++|.+.+.+.++++++
T Consensus 27 V~pa~VvViGa-GvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l 68 (183)
T d1l7da1 27 VPPARVLVFGV-GVAGLQAIATAKRLGAVVMATDVRAATKEQV 68 (183)
T ss_dssp ECCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCSTTHHHH
T ss_pred cCCcEEEEEcC-cHHHHHHHHHHHHcCCEEEEEeccHHHHHHH
Confidence 34567888886 5789999999999999999999999887654
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=82.78 E-value=1.5 Score=38.16 Aligned_cols=39 Identities=18% Similarity=0.091 Sum_probs=34.0
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChh
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSE 212 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~ 212 (512)
..+.||++.|.|. |.||+++|+.+..-|.+|+..++...
T Consensus 43 ~~l~g~tvgIiG~-G~IG~~va~~l~~fg~~v~~~d~~~~ 81 (191)
T d1gdha1 43 EKLDNKTLGIYGF-GSIGQALAKRAQGFDMDIDYFDTHRA 81 (191)
T ss_dssp CCCTTCEEEEECC-SHHHHHHHHHHHTTTCEEEEECSSCC
T ss_pred ceecccceEEeec-ccchHHHHHHHHhhcccccccccccc
Confidence 4678999999985 78999999999999999999987643
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=82.70 E-value=0.93 Score=35.88 Aligned_cols=37 Identities=22% Similarity=0.259 Sum_probs=31.9
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChh
Q 010380 175 AGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSE 212 (512)
Q Consensus 175 l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~ 212 (512)
..+|.++|.|| |-+|.++|..|++.|.+|.++.|.+.
T Consensus 20 ~~~~~vvVvGg-G~ig~E~A~~l~~~g~~vt~i~~~~~ 56 (121)
T d1mo9a2 20 EPGSTVVVVGG-SKTAVEYGCFFNATGRRTVMLVRTEP 56 (121)
T ss_dssp CCCSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhcchhheEeeccch
Confidence 35788888886 68999999999999999999988643
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=82.64 E-value=0.56 Score=39.92 Aligned_cols=35 Identities=9% Similarity=0.097 Sum_probs=29.5
Q ss_pred CCEEEEECCCChHHHHHHHHHHHCCCE-EEEEEcChh
Q 010380 177 PRNVVITGSTRGLGKALAREFLLSGDR-VVVASRSSE 212 (512)
Q Consensus 177 gk~vLVTGassGIG~aiA~~La~~Ga~-Vvl~~R~~~ 212 (512)
+|.|+|.|| |-.|+..|..|+++|++ |.+..|++.
T Consensus 4 ~~kVaIIGa-GpaGl~aA~~l~~~G~~~V~v~E~~~~ 39 (196)
T d1gtea4 4 SAKIALLGA-GPASISCASFLARLGYSDITIFEKQEY 39 (196)
T ss_dssp GCCEEEECC-SHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred CCEEEEECC-hHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence 577888886 68999999999999985 989888753
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=82.47 E-value=0.78 Score=38.75 Aligned_cols=44 Identities=20% Similarity=0.040 Sum_probs=37.0
Q ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHHHHHHH
Q 010380 175 AGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRMTVTEL 221 (512)
Q Consensus 175 l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~~~~el 221 (512)
.+|+.||..|++.| ..+..|+++|++|+.++.++..++.+.+..
T Consensus 19 ~~~~rvLd~GCG~G---~~a~~la~~G~~V~gvD~S~~~i~~a~~~~ 62 (201)
T d1pjza_ 19 VPGARVLVPLCGKS---QDMSWLSGQGYHVVGAELSEAAVERYFTER 62 (201)
T ss_dssp CTTCEEEETTTCCS---HHHHHHHHHCCEEEEEEECHHHHHHHHHHH
T ss_pred CCCCEEEEecCcCC---HHHHHHHHcCCceEeecccHHHHHHHHHHh
Confidence 36789999999887 477899999999999999998887765554
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=82.40 E-value=0.88 Score=39.40 Aligned_cols=38 Identities=21% Similarity=0.253 Sum_probs=33.2
Q ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcCh
Q 010380 173 CKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSS 211 (512)
Q Consensus 173 ~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~ 211 (512)
...++|.|+|.|| |--|++.|..|+++|++|.+..+++
T Consensus 39 ~~~~~k~V~IIGa-GPAGL~AA~~la~~G~~Vtl~E~~~ 76 (179)
T d1ps9a3 39 PAVQKKNLAVVGA-GPAGLAFAINAAARGHQVTLFDAHS 76 (179)
T ss_dssp SCSSCCEEEEECC-SHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred CCCCCcEEEEECc-cHHHHHHHHHHHhhccceEEEeccC
Confidence 3457899999996 6789999999999999999999874
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=81.13 E-value=4.4 Score=34.72 Aligned_cols=109 Identities=12% Similarity=0.079 Sum_probs=63.6
Q ss_pred cCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHHH---HHHHHHHHHhhhhhhcCCCCcccccCceEEEE
Q 010380 172 HCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSESVRM---TVTELEENLKEGMMAAGGSSKKNLVHAKVAGI 248 (512)
Q Consensus 172 ~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~~---~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v 248 (512)
...+.++++.|.| .|.||+.+|+.+..-|++|+..++....... ..+.+.+.+. ...+..+
T Consensus 39 ~~~l~~~~vgiiG-~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~l~ell~---------------~sDii~i 102 (188)
T d1sc6a1 39 SFEARGKKLGIIG-YGHIGTQLGILAESLGMYVYFYDIENKLPLGNATQVQHLSDLLN---------------MSDVVSL 102 (188)
T ss_dssp CCCSTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCCCCCTTCEECSCHHHHHH---------------HCSEEEE
T ss_pred cccccceEEEEee-cccchhhhhhhcccccceEeeccccccchhhhhhhhhhHHHHHh---------------hccceee
Confidence 3468899999996 5899999999999999999999886331100 0001111111 1467777
Q ss_pred EccCCChhhHHHHH-HHHHHHcCCCcccccccccCCCCCCCcCCCHHHHHHHHHhhhh
Q 010380 249 ACDVCEPADVQKLS-NFAVNEFGSIDIWINNAGTNKGFKPLLQFTNEEIEQIVSTNLV 305 (512)
Q Consensus 249 ~~Dltd~~sv~~~~-~~i~~~~g~IDvLInnAG~~~~~~~~~~~s~e~~~~~~~vNv~ 305 (512)
.|.+++... .++ ++..+.. +-+.++-|.+.+. + ++.+++.+.++-|-.
T Consensus 103 ~~plt~~T~--~li~~~~l~~m-k~~a~lIN~aRG~----l--vde~aL~~aL~~~~~ 151 (188)
T d1sc6a1 103 HVPENPSTK--NMMGAKEISLM-KPGSLLINASRGT----V--VDIPALADALASKHL 151 (188)
T ss_dssp CCCSSTTTT--TCBCHHHHHHS-CTTEEEEECSCSS----S--BCHHHHHHHHHTTSE
T ss_pred cccCCcchh--hhccHHHHhhC-CCCCEEEEcCcHH----h--hhhHHHHHHHHcCCc
Confidence 777775331 111 1222233 3455555665432 2 456666666654443
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=81.11 E-value=1.3 Score=37.65 Aligned_cols=41 Identities=24% Similarity=0.234 Sum_probs=36.9
Q ss_pred cCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEEcChhh
Q 010380 172 HCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVVASRSSES 213 (512)
Q Consensus 172 ~~~l~gk~vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~ 213 (512)
...+.||+++|.|= +-+|+.+|+.|...|++|+++..++-+
T Consensus 18 ~~~laGk~vvV~GY-G~vGrG~A~~~rg~Ga~V~V~E~DPi~ 58 (163)
T d1v8ba1 18 DFLISGKIVVICGY-GDVGKGCASSMKGLGARVYITEIDPIC 58 (163)
T ss_dssp CCCCTTSEEEEECC-SHHHHHHHHHHHHHTCEEEEECSCHHH
T ss_pred CceecCCEEEEecc-cccchhHHHHHHhCCCEEEEEecCchh
Confidence 46789999999984 789999999999999999999999754
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.07 E-value=2.2 Score=39.65 Aligned_cols=76 Identities=16% Similarity=0.130 Sum_probs=52.1
Q ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEcChhhHHHHHHHHHHHHhhhhhhcCCCCcccccCceEEEEEccC
Q 010380 174 KAGPRNVVITGSTRGLGKALAREFLLSGD-RVVVASRSSESVRMTVTELEENLKEGMMAAGGSSKKNLVHAKVAGIACDV 252 (512)
Q Consensus 174 ~l~gk~vLVTGassGIG~aiA~~La~~Ga-~Vvl~~R~~~~l~~~~~el~~~~~~~~~~~g~~~~~~~~g~~v~~v~~Dl 252 (512)
..+||+||-.|++.|+ ++..+++.|+ +|+.++.++.. ..+.+...+. ....++.++..|+
T Consensus 33 ~~~~~~VLDiGcG~G~---lsl~aa~~Ga~~V~aid~s~~~-~~a~~~~~~~---------------~~~~~i~~~~~~~ 93 (311)
T d2fyta1 33 IFKDKVVLDVGCGTGI---LSMFAAKAGAKKVLGVDQSEIL-YQAMDIIRLN---------------KLEDTITLIKGKI 93 (311)
T ss_dssp GTTTCEEEEETCTTSH---HHHHHHHTTCSEEEEEESSTHH-HHHHHHHHHT---------------TCTTTEEEEESCT
T ss_pred cCCcCEEEEECCCCCH---HHHHHHHcCCCEEEEEeCHHHH-HHHHHHHHHh---------------CCCccceEEEeeH
Confidence 3579999999999886 5677888997 79999988653 3333333221 0345788899998
Q ss_pred CChhhHHHHHHHHHHHcCCCcccccc
Q 010380 253 CEPADVQKLSNFAVNEFGSIDIWINN 278 (512)
Q Consensus 253 td~~sv~~~~~~i~~~~g~IDvLInn 278 (512)
.+... ...+.|++|..
T Consensus 94 ~~l~~----------~~~~~D~Ivse 109 (311)
T d2fyta1 94 EEVHL----------PVEKVDVIISE 109 (311)
T ss_dssp TTSCC----------SCSCEEEEEEC
T ss_pred HHhcC----------ccccceEEEEe
Confidence 77532 12478999875
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=80.38 E-value=0.92 Score=37.66 Aligned_cols=35 Identities=17% Similarity=0.148 Sum_probs=28.5
Q ss_pred EEEECCCChHHHHHHHHHHHCCCEEEEEEcChhhHH
Q 010380 180 VVITGSTRGLGKALAREFLLSGDRVVVASRSSESVR 215 (512)
Q Consensus 180 vLVTGassGIG~aiA~~La~~Ga~Vvl~~R~~~~l~ 215 (512)
|-|. |.|-+|.++|+.|+++|++|+..+++.++..
T Consensus 3 IgiI-G~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~ 37 (152)
T d1i36a2 3 VGFI-GFGEVAQTLASRLRSRGVEVVTSLEGRSPST 37 (152)
T ss_dssp EEEE-SCSHHHHHHHHHHHHTTCEEEECCTTCCHHH
T ss_pred EEEE-cHHHHHHHHHHHHHHCCCeEEEEcCchhHHH
Confidence 3444 4599999999999999999999888766553
|