Citrus Sinensis ID: 010454

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510
MLDLNLNVMSIESTQQNSDEERVGSVVLVEKSPEGSSGTSNSSVVNADASSNVGDDESCSTRAVAGDNSVFTFNFDILKVGGDSGNVRNENVEQNNAASRKEFAFFPASGGGENGGGQSSGSWIDLSFDKQQQQYQNQQPQQQEGGGEVRVTQQSSPVVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEGEMITEGSNEGGDHNLDLNLGISSSFGSGPKANEGHSQFLSGPYGAHGGRTSRTENSTTAAVGDSASKGLMRTSEHPIFWNGAYPGLLTTEEKATEKRIELGPPQGLPNWAWQMHGQVSGTPASLLSSAASSGFPFSAAPPSAAVLSSKPLNPSDVNLCFTSTNTTAPNTSQFYYQMKLPQAPP
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccEEEccccccEEEEEEcccCEEEEcccccHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHcccccccccccccccccccccccccccccccccccEEEEEEccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccc
MLDLNL*************************************************************NSVFTFNFDILKVG*******************************************************************************************YRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTY****************************************************************************HPIFWNGAYPGLLTT****************LPNWAWQMH******************************************LCFT************Y***KL*****
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MLDLNLNVMSIESTQQNSDEERVGSVVLVEKSPEGSSGTSNSSVVNADASSNVGDDESCSTRAVAGDNSVFTFNFDILKVGGDSGNVRNENVEQNNAASRKEFAFFPASGGGENGGGQSSGSWIDLSFDKQQQQYQNQQPQQQEGGGEVRVTQQSSPVVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEGEMITEGSNEGGDHNLDLNLGISSSFGSGPKANEGHSQFLSGPYGAHGGRTSRTENSTTAAVGDSASKGLMRTSEHPIFWNGAYPGLLTTEEKATEKRIELGPPQGLPNWAWQMHGQVSGTPASLLSSAASSGFPFSAAPPSAAVLSSKPLNPSDVNLCFTSTNTTAPNTSQFYYQMKLPQAPP

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Ethylene-responsive transcription factor RAP2-7 Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay.probableQ9SK03

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 1GCC, chain A
Confidence level:very confident
Coverage over the Query: 264-323
View the alignment between query and template
View the model in PyMOL
Template: 1GCC, chain A
Confidence level:very confident
Coverage over the Query: 172-230
View the alignment between query and template
View the model in PyMOL
Template: 1U3E, chain M
Confidence level:probable
Coverage over the Query: 210-305
View the alignment between query and template
View the model in PyMOL
Template: 1U3E, chain M
Confidence level:probable
Coverage over the Query: 147-211
View the alignment between query and template
View the model in PyMOL