Citrus Sinensis ID: 010454

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510
Protein Sequence
MLDLNLNVMSIESTQQNSDEERVGSVVLVEKSPEGSSGTSNSSVVNADASSNVGDDESCSTRAVAGDNSVFTFNFDILKVGGDSGNVRNENVEQNNAASRKEFAFFPASGGGENGGGQSSGSWIDLSFDKQQQQYQNQQPQQQEGGGEVRVTQQSSPVVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEGEMITEGSNEGGDHNLDLNLGISSSFGSGPKANEGHSQFLSGPYGAHGGRTSRTENSTTAAVGDSASKGLMRTSEHPIFWNGAYPGLLTTEEKATEKRIELGPPQGLPNWAWQMHGQVSGTPASLLSSAASSGFPFSAAPPSAAVLSSKPLNPSDVNLCFTSTNTTAPNTSQFYYQMKLPQAPP
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccEEEccccccEEEEEEcccEEEEEcccccHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHcccccccccccccccccccccccccccccccccccEEEEEEccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccEEccccccccccccccccEEEcccccccccccccccccccccccEEEEEEEEEEcccccccccccccccccccccccEEEcccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccEEccEEEEEccccEEEEEEccccEEEEccccHHHHHHHHHHHHHHHHccccccEcccHHHHHHHHHHHHHccHHHHHHHHHHcccccccccccccccEccccccEEEEEcEEccccEEEEEccccHHHHHHHHHHHHHHHcccccEEccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccccccHHccccccccccccccHHHccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccEEcccccccc
Coil and Loop (DISEMBL)
MLDLNLNVMSIEstqqnsdeervGSVVLVekspegssgtsnssvvnadassnvgddescstravagdnsvftFNFDILKvggdsgnvrnenveqnnaasrkefaffpasgggengggqssgswiDLSFDKQQQQYQnqqpqqqegggevrvtqqsspvvkksrrgprsrssqyrgvtfyrrtgrweshiwdcgkqvylggFDTAHAAARAYDRAAIKfrgvdadinfnlADYEDDMKQMKNLTKEEFVHILRRQstgfsrgsskyrgvtlhkcgrwEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIkcngreavtnfepstyegemitegsneggdhnldlnlgisssfgsgpkaneghsqflsgpygahggrtsrtensttaavgdsaskglmrtsehpifwngaypgllttEEKATEKrielgppqglpnwawqmhgqvsgtpaSLLSsaassgfpfsaappsaavlsskplnpsdvnlcftstnttapntsqFYYQMKLPQAPP
Flexible Loop (DISEMBL)
MLDLNLNVMSIestqqnsdeervGSVVLVEkspegssgtsnssvvnadassnvgddescstravagdnsvFTFNFDILKVGGDSGNVRNENVEQNNAASRKEFAFFPASGGGENGGGQSSGSWIDLSFDKQQQQYQNQQpqqqegggevrvtqqsspvvkksrrgprsrssqyrgvtfyrrtgrweshiWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLADYEDDMKQMKNLTKEEFVHILRrqstgfsrgsskyrgvtlhkcgrwEARMGQFLGKKYIYLGLFDSEVEAARAYDKAaikcngreavtnfepstYEGEMITEGSNEGGDHNLDLNLGISSSFGSGPKANEGHSQFLSGPYGAHGgrtsrtensttaavGDSASKGLMRTSEHPIFWNGAYPGLLTTEEKATEKRIELGPPQGLPNWAWQMHGQVSGTPASLLSSAASSGFPFSAAPPSAAVLSSKPLNPSDVNLCFTSTNTTAPNTSQFYYQMKLPQAPP
Low Complexity Region (SEG)
MLDLNLNVMSIESTQQNSDEERVGSVVLVEKSPEgssgtsnssvvnadassnvGDDESCSTRAVAGDNSVFTFNFDILKVGGDSGNVRNENVEQNNAASRKEFAFFPAsgggengggqssgsWIDLSFDKqqqqyqnqqpqqqEGGGEVRVTQQSSPVVKKsrrgprsrssQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTahaaaraydraaIKFRGVDADINFNLADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEGEMITEGSNEGGDHNLDLNLGISSSFGSGPKANEGHSQFLSGPYGAHGGRTSRTENSTTAAVGDSASKGLMRTSEHPIFWNGAYPGLLTTEEKATEKRIELGPPQGLPNWAWQMHGQVSGTpasllssaassgfpfsaappsaavlsskplNPSDVNLCFTSTNTTAPNTSQFYYQMKLPQAPP
Disordered region (IsUnstruct)
***************************************************************VAGDNSVFTFNFDILKVGG******************************************************************************************YRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNF*********************************************************************************HPIFWNGAYPGLLTT****************LPNWAWQMH******************************************LCFT************Y**********
Disordered Region (DISOPRED)
MLDLNL**************************************************************************************************************************************************************************TFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTY**********************************************************************************************************************************************************************************KL*****
Disordered Region (DISEMBL)
MLDLNLNVMSIES**********GSVVLV*******************************TRAVAGDNSVFTFNFDILKVGGDSGNVRNENVEQNNAASRKEFAFFPASGGGENGGGQSSGSWIDLSFDK******************************************YRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEGEMITEGSNEGGDHNLDLNLGISSSFGSGPKANEGHSQFLSGPYGAHGGRTSRTENSTTAAVGDSASKGLMRTSEHPIFWNGAYPGLLTTEEKATEKRIELGPPQGLPNWAWQMHGQVSGTPASLLSSAASSGFPFSAAPPSAAVLSSKPLNPSDVNLCFTSTNTTAPNTSQFYYQMKLPQAPP
Disordered Region (DISPRO)
*******************************************************************NSVFTFNFDILKVG*****************SRKEFAFFPASG******************D***************************************RSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEGEMIT**************************************************************KGLMRTSEHPIFWNGAYPGLLTTEEKATEKRIELGPPQGLPNWAWQMHGQVSGTPASLLSSAA**********************PSDVNLCFTSTNTTAPNTSQFYYQMKL*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLDLNLNVMSIESTQQNSDEERVGSVVLVEKSPEGSSGTSNSSVVNADASSNVGDDESCSTRAVAGDNSVFTFNFDILKVGGDSGNVRNENVEQNNAASRKEFAFFPASGGGENGGGQSSGSWIDLSFDKQQQQYQNQQPQQQEGGGEVRVTQQSSPVVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEGEMITEGSNEGGDHNLDLNLGISSSFGSGPKANEGHSQFLSGPYGAHGGRTSRTENSTTAAVGDSASKGLMRTSEHPIFWNGAYPGLLTTEEKATEKRIELGPPQGLPNWAWQMHGQVSGTPASLLSSAASSGFPFSAAPPSAAVLSSKPLNPSDVNLCFTSTNTTAPNTSQFYYQMKLPQAPP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	510	2.2.26 [Sep-21-2011]
Q9SK03	449	Ethylene-responsive trans	yes	no	0.796	0.904	0.531	2e-98
Q9LVG2	485	AP2-like ethylene-respons	no	no	0.927	0.975	0.452	6e-89
P47927	432	Floral homeotic protein A	no	no	0.462	0.546	0.692	2e-82
Q9FH95	352	AP2-like ethylene-respons	no	no	0.384	0.556	0.811	8e-79
Q6PQQ3	558	AP2-like ethylene-respons	no	no	0.347	0.317	0.505	4e-46
Q5YGP7	568	AP2-like ethylene-respons	no	no	0.321	0.288	0.531	5e-46
Q5YGP8	574	AP2-like ethylene-respons	no	no	0.366	0.325	0.48	7e-46
Q38914	555	AP2-like ethylene-respons	no	no	0.372	0.342	0.477	2e-45
Q1PFE1	415	AP2-like ethylene-respons	no	no	0.356	0.438	0.492	1e-44
Q6PQQ4	584	AP2-like ethylene-respons	no	no	0.339	0.296	0.505	5e-44

>sp|Q9SK03|RAP27_ARATH Ethylene-responsive transcription factor RAP2-7 OS=Arabidopsis thaliana GN=RAP2-7 PE=2 SV=2

 Score =  360 bits (923), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 264/497 (53%), Positives = 302/497 (60%), Gaps = 91/497 (18%)

Query: 1   MLDLNLNVMSIESTQQNSDEERVGSVVLVEKSPEGS-------SGTSNSSVVNADASSNV 53
           MLDLNLN  S ESTQ   D        L  ++ + S       SGTS SSV+NAD     
Sbjct: 1   MLDLNLNADSPESTQYGGDS------YLDRQTSDNSAGNRVEESGTSTSSVINAD----- 49

Query: 54  GDDESCSTRAVAGDNSVFTFNFDILKVGGDSGNVRNENVEQNNAASRKEFAFFPASGGG- 112
           GD++SCSTRA       FT +FDILKVG  SG    +     +A+  KEF  FP SG   
Sbjct: 50  GDEDSCSTRA-------FTLSFDILKVGSSSGG---DESPAASASVTKEF--FPVSGDCG 97

Query: 113 ---ENGGGQSSGSWIDLSFDKQQQQYQNQQPQQQEGGGEVRVTQQSSPV------VKKSR 163
              +  G  SS +WIDLSFD+              G GE ++             VKKSR
Sbjct: 98  HLRDVEGSSSSRNWIDLSFDRI-------------GDGETKLVTPVPTPAPVPAQVKKSR 144

Query: 164 RGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDA 223
           RGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDA
Sbjct: 145 RGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDA 204

Query: 224 DINFNLADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQF 283
           DINF L DYE+DMKQ++NL+KEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQF
Sbjct: 205 DINFTLGDYEEDMKQVQNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQF 264

Query: 284 LGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEGEMITEGSNEGGDHNLD 343
           LGKK               AYDKAAI  NGREAVTNFE S+Y+ E+ +E +N      +D
Sbjct: 265 LGKK---------------AYDKAAINTNGREAVTNFEMSSYQNEINSESNNS----EID 305

Query: 344 LNLGISSSFGSGPKANEGHSQFLSGPYGAHGGRTSRTENSTTAAVGDSASKGL-MRTSEH 402
           LNLGIS S G+ PK N     F S  Y    G + R +N     +G   +  L   +S+H
Sbjct: 306 LNLGISLSTGNAPKQNGRLFHFPSNTYETQRGVSLRIDNE---YMGKPVNTPLPYGSSDH 362

Query: 403 PIFWNGAYPGLLTTEE-KATEKRIELGPPQG-LPNWAWQMHGQVSGT--------PASLL 452
            ++WNGA P      E +ATEKR E    +G + NW WQ  GQ S          P  L 
Sbjct: 363 RLYWNGACPSYNNPAEGRATEKRSE---AEGMMSNWGWQRPGQTSAVRPQPPGPQPPPLF 419

Query: 453 S-SAASSGFP-FSAAPP 467
           S +AASSGF  F   PP
Sbjct: 420 SVAAASSGFSHFRPQPP 436

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVG2|TOE2_ARATH AP2-like ethylene-responsive transcription factor TOE2 OS=Arabidopsis thaliana GN=TOE2 PE=1 SV=1

 Score =  328 bits (841), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 236/522 (45%), Positives = 284/522 (54%), Gaps = 49/522 (9%)

Query: 1   MLDLNLNVMSIESTQQNSDEERVGSVVLVEKSPEGSSGTSNSSVVNADASSNV-GDDESC 59
           MLDLNL+V S ESTQ   D   V  V L +      S TSNSSVVNA+ASS + G+DE C
Sbjct: 1   MLDLNLDVDSTESTQNERDSITVKGVSLNQMD---ESVTSNSSVVNAEASSCIDGEDELC 57

Query: 60  STRAVAGDNSVFTFNFDILKVGGDSGNVRNENVEQNNAASRKEFAFFPASGGGE--NGGG 117
           STR V        F F+ILK     G    E  +   +A      FFP + G    +   
Sbjct: 58  STRTV-------KFQFEILK----GGGEEEEEDDDERSAVMMTKEFFPVAKGMNFMDSSA 106

Query: 118 QSSGSWIDLSFDKQQQQYQNQQPQQQEGGGEVRVTQQSSPVVKKSRRGPRSRSSQYRGVT 177
           QSS S +D+SF + +Q           G    RV Q  S  VKKSRRGPRS+SSQYRGVT
Sbjct: 107 QSSRSTVDISFQRGKQGGDFIGSGSGGGDAS-RVMQPPSQPVKKSRRGPRSKSSQYRGVT 165

Query: 178 FYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLADYEDDMK 237
           FYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAA+KFRG++ADINF + DYE+D+K
Sbjct: 166 FYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAVKFRGLEADINFVIGDYEEDLK 225

Query: 238 QMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSE 297
           QM NL+KEE V +LRRQS+GFSR +S+Y+GV L K G W A+M Q  G            
Sbjct: 226 QMANLSKEEVVQVLRRQSSGFSRNNSRYQGVALQKIGGWGAQMEQLHGNM---------- 275

Query: 298 VEAARAYDKAAIKCNGREAVTNFEPSTYEGEMITEGSNEGGDHNLDLNLGISSSFGSGPK 357
                  DKAA++  GREA +  EP  +   MI E +N      LDLNLGIS S G GPK
Sbjct: 276 -----GCDKAAVQWKGREAASLIEP--HASRMIPEAANV----KLDLNLGISLSLGDGPK 324

Query: 358 ANEGHSQFLSGPYGAHGGRTSRTENSTTAAVGDSASKGLMRTSEHPIFWNGAYPGLLTTE 417
             +   +    P  +  GR +  EN   AA  D+    L R S+H    +       +  
Sbjct: 325 QKDRALRLHHVPNNSVCGRNTMMENHMAAAACDTPFNFLKRGSDHLNNRHALPSAFFSPM 384

Query: 418 EKATEKRIELGPPQGLPNWAWQMHGQVSG------TPASLLSSAASSGFPFSAAPPSAAV 471
           E+  EK + L   Q  P   WQ H Q SG      T   L S+AASSGF  SA  P ++ 
Sbjct: 385 ERTPEKGLMLRSHQSFPARTWQGHDQSSGGTAVAATAPPLFSNAASSGFSLSATRPPSST 444

Query: 472 LSSKPLNPSDVNLCFTSTNTTAPNTSQFYYQ---MKLPQAPP 510
               P  P  VNL         P+     +Q   M  PQ PP
Sbjct: 445 AIHHPSQPF-VNLNQPGLYVIHPSDYISQHQHNLMNRPQPPP 485

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay.

Arabidopsis thaliana (taxid: 3702)

>sp|P47927|AP2_ARATH Floral homeotic protein APETALA 2 OS=Arabidopsis thaliana GN=AP2 PE=1 SV=1

 Score =  306 bits (784), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 180/260 (69%), Positives = 200/260 (76%), Gaps = 24/260 (9%)

Query: 105 FFPASGGGENGGGQSSG----SWIDLSFDKQQQQYQNQQPQQQEGGGEVRVTQQSSPVV- 159
           FFP      NGGG +SG     W  + F          Q     G    + T  ++ VV 
Sbjct: 65  FFPEMDS--NGGGVASGFPRAHWFGVKF---------CQSDLATGSSAGKATNVAAAVVE 113

Query: 160 -----KKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRA 214
                KKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRA
Sbjct: 114 PAQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRA 173

Query: 215 AIKFRGVDADINFNLADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCG 274
           AIKFRGV+ADINFN+ DY+DD+KQM NLTKEEFVH+LRRQSTGF RGSSKYRGVTLHKCG
Sbjct: 174 AIKFRGVEADINFNIDDYDDDLKQMTNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCG 233

Query: 275 RWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEGEMITEGS 334
           RWEARMGQFLGKKY+YLGLFD+EVEAARAYDKAAIKCNG++AVTNF+PS Y+ E+  E S
Sbjct: 234 RWEARMGQFLGKKYVYLGLFDTEVEAARAYDKAAIKCNGKDAVTNFDPSIYDEELNAESS 293

Query: 335 ---NEGGDHNLDLNLGISSS 351
                  DHNLDL+LG S++
Sbjct: 294 GNPTTPQDHNLDLSLGNSAN 313

Probable transcriptional activator that promotes early floral meristem identity. Is required subsequently for the transition of an inflorescence meristem into a floral meristem. Plays a central role in the specification of floral identity, particularly for the normal development of sepals and petals in the wild-type flower. Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in association with other repressors like LEUNIG and SEUSS. It is also required during seed development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FH95|TOE3_ARATH AP2-like ethylene-responsive transcription factor TOE3 OS=Arabidopsis thaliana GN=TOE3 PE=2 SV=1

 Score =  295 bits (754), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 159/196 (81%), Positives = 174/196 (88%)

Query: 156 SPVVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAA 215
           SP +KKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAA
Sbjct: 80  SPPIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAA 139

Query: 216 IKFRGVDADINFNLADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGR 275
           IKFRGVDADINF++ DY DD+KQM NLTKEEF+H+LRRQSTGF RGSSKYRGVTLHKCGR
Sbjct: 140 IKFRGVDADINFDIEDYLDDLKQMGNLTKEEFMHVLRRQSTGFPRGSSKYRGVTLHKCGR 199

Query: 276 WEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEGEMITEGSN 335
           WE+R+GQFL KKY+YLGLFD+E+EAARAYDKAAIKCNG++AVTNF+P  YE E       
Sbjct: 200 WESRLGQFLNKKYVYLGLFDTEIEAARAYDKAAIKCNGKDAVTNFDPKVYEEEEDLSSET 259

Query: 336 EGGDHNLDLNLGISSS 351
               HNL L+LG SSS
Sbjct: 260 TRNGHNLGLSLGESSS 275

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). May regulate negatively the transition to flowering time and confers flowering time delay.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6PQQ3|AIL5_ARATH AP2-like ethylene-responsive transcription factor AIL5 OS=Arabidopsis thaliana GN=AIL5 PE=2 SV=2

 Score =  186 bits (472), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 95/188 (50%), Positives = 131/188 (69%), Gaps = 11/188 (5%)

Query: 154 QSSPVVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWD--C--------GKQVYLGGFDT 203
           ++SP  KK+      R+S YRGVT +R TGR+E+H+WD  C        G+QVYLGG+D 
Sbjct: 185 EASPTPKKNVESFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDK 244

Query: 204 AHAAARAYDRAAIKFRGVDADINFNLADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGSS 263
              AARAYD AA+K+ G     NF +++YE ++++MK++T++EFV  LRR+S+GFSRG+S
Sbjct: 245 EDKAARAYDLAALKYWGPTTTTNFPISNYESELEEMKHMTRQEFVASLRRKSSGFSRGAS 304

Query: 264 KYRGVTL-HKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEP 322
            YRGVT  H+ GRW+AR+G+  G K +YLG F ++ EAA AYD AAIK  G  AVTNF+ 
Sbjct: 305 MYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDI 364

Query: 323 STYEGEMI 330
           S Y+ + I
Sbjct: 365 SRYDVKSI 372

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5YGP7|PLET2_ARATH AP2-like ethylene-responsive transcription factor PLT2 OS=Arabidopsis thaliana GN=PLT2 PE=2 SV=1

 Score =  186 bits (471), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 93/175 (53%), Positives = 124/175 (70%), Gaps = 11/175 (6%)

Query: 169 RSSQYRGVTFYRRTGRWESHIWD--C--------GKQVYLGGFDTAHAAARAYDRAAIKF 218
           R+S YRGVT +R TGR+E+H+WD  C        G+QVYLGG+D    AARAYD AA+K+
Sbjct: 187 RTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKY 246

Query: 219 RGVDADINFNLADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTL-HKCGRWE 277
            G     NF + +YE ++++MKN+T++EFV  +RR+S+GFSRG+S YRGVT  H+ GRW+
Sbjct: 247 WGPSTTTNFPITNYEKEVEEMKNMTRQEFVASIRRKSSGFSRGASMYRGVTRHHQHGRWQ 306

Query: 278 ARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEGEMITE 332
           AR+G+  G K +YLG F +E EAA AYD AAIK  G  AVTNFE + Y+ + I E
Sbjct: 307 ARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFEINRYDVKAILE 361

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Master regulator of basal/root fate. Essential for root quiescent center (QC) and columella specification, stem cell activity, as well as for establishment of the stem cell niche during embryogenesis. Modulates the root polar auxin transport by regulating the distribution of PIN genes. Essential role in respecifying pattern and polarity in damaged roots. Direct target of the transcriptional corepressor TPL. Expression levels and patterns regulated post-transcriptionally by root meristem growth factors (RGFs).

Arabidopsis thaliana (taxid: 3702)

>sp|Q5YGP8|PLET1_ARATH AP2-like ethylene-responsive transcription factor PLT1 OS=Arabidopsis thaliana GN=PLT1 PE=2 SV=1

 Score =  185 bits (469), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 96/200 (48%), Positives = 136/200 (68%), Gaps = 13/200 (6%)

Query: 146 GGEVRVTQQSSPVVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWD--C--------GKQ 195
           GG + V + ++P  +++      R+S YRGVT +R TGR+E+H+WD  C        G+Q
Sbjct: 157 GGALAVVETATP--RRALDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQ 214

Query: 196 VYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLADYEDDMKQMKNLTKEEFVHILRRQS 255
           VYLGG+D    AAR+YD AA+K+ G     NF + +YE ++++MK++T++EFV  +RR+S
Sbjct: 215 VYLGGYDKEDKAARSYDLAALKYWGPSTTTNFPITNYEKEVEEMKHMTRQEFVAAIRRKS 274

Query: 256 TGFSRGSSKYRGVTL-HKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGR 314
           +GFSRG+S YRGVT  H+ GRW+AR+G+  G K +YLG F +E EAA AYD AAIK  G 
Sbjct: 275 SGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGL 334

Query: 315 EAVTNFEPSTYEGEMITEGS 334
            AVTNFE + Y+ + I E S
Sbjct: 335 NAVTNFEINRYDVKAILESS 354

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Master regulator of basal/root fate. Essential for root quiescent center (QC) and columella specification, stem cell activity, as well as for establishment of the stem cell niche during embryogenesis. Modulates the root polar auxin transport by regulating the distribution of PIN genes. Essential role in respecifying pattern and polarity in damaged roots. Direct target of the transcriptional corepressor TPL. Expression levels and patterns regulated post-transcriptionally by root meristem growth factors (RGFs).

Arabidopsis thaliana (taxid: 3702)

>sp|Q38914|ANT_ARATH AP2-like ethylene-responsive transcription factor ANT OS=Arabidopsis thaliana GN=ANT PE=1 SV=2

 Score =  183 bits (465), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 96/201 (47%), Positives = 134/201 (66%), Gaps = 11/201 (5%)

Query: 141 QQQEGGGEVRVTQQSSPVVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDC-------- 192
           +++ G  +V V  Q   V +KS      R+SQYRGVT +R TGR+E+H+WD         
Sbjct: 252 KKKRGQEDVVVVGQKQIVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSFKKEGHS 311

Query: 193 --GKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLADYEDDMKQMKNLTKEEFVHI 250
             G+QVYLGG+D    AARAYD AA+K+ G     NF+  +Y+ +++ MKN+T++E+V  
Sbjct: 312 RKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHTNFSAENYQKEIEDMKNMTRQEYVAH 371

Query: 251 LRRQSTGFSRGSSKYRGVTL-HKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAI 309
           LRR+S+GFSRG+S YRGVT  H+ GRW+AR+G+  G K +YLG F ++ EAA AYD AAI
Sbjct: 372 LRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFGTQEEAAEAYDVAAI 431

Query: 310 KCNGREAVTNFEPSTYEGEMI 330
           K  G  AVTNF+ + Y+ + I
Sbjct: 432 KFRGTNAVTNFDITRYDVDRI 452

Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene.

Arabidopsis thaliana (taxid: 3702)

>sp|Q1PFE1|AIL1_ARATH AP2-like ethylene-responsive transcription factor AIL1 OS=Arabidopsis thaliana GN=AIL1 PE=2 SV=1

 Score =  181 bits (459), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 95/193 (49%), Positives = 130/193 (67%), Gaps = 11/193 (5%)

Query: 153 QQSSPVVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWD--C--------GKQVYLGGFD 202
           Q    V +KS      R+SQYRGVT +R TGR+E+H+WD  C        G+QVYLGG+D
Sbjct: 204 QVKESVPRKSVDSYGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRRGRQVYLGGYD 263

Query: 203 TAHAAARAYDRAAIKFRGVDADINFNLADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGS 262
               AARAYD AA+K+ G    +NF L++YE +++++ N+ ++EFV +LRR S+GFSRG+
Sbjct: 264 EEEKAARAYDLAALKYWGPTTHLNFPLSNYEKEIEELNNMNRQEFVAMLRRNSSGFSRGA 323

Query: 263 SKYRGVTL-HKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFE 321
           S YRGVT  H+ GRW+AR+G+  G K +YLG F ++ EAA AYD AAIK  G  AVTNF+
Sbjct: 324 SVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFD 383

Query: 322 PSTYEGEMITEGS 334
            + Y+ + I   S
Sbjct: 384 INRYDVKRICSSS 396

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6PQQ4|BBM_ARATH AP2-like ethylene-responsive transcription factor BBM OS=Arabidopsis thaliana GN=BBM PE=2 SV=2

 Score =  179 bits (453), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 93/184 (50%), Positives = 127/184 (69%), Gaps = 11/184 (5%)

Query: 160 KKSRRGPRSRSSQYRGVTFYRRTGRWESHIWD--C--------GKQVYLGGFDTAHAAAR 209
           KK+      R+S YRGVT +R TGR+E+H+WD  C        G+QVYLGG+D    AAR
Sbjct: 198 KKTIESFGQRTSIYRGVTRHRWTGRYEAHLWDNSCKREGQTRKGRQVYLGGYDKEEKAAR 257

Query: 210 AYDRAAIKFRGVDADINFNLADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVT 269
           AYD AA+K+ G     NF L++YE ++++MK++T++E+V  LRR+S+GFSRG+S YRGVT
Sbjct: 258 AYDLAALKYWGTTTTTNFPLSEYEKEVEEMKHMTRQEYVASLRRKSSGFSRGASIYRGVT 317

Query: 270 L-HKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEGE 328
             H+ GRW+AR+G+  G K +YLG F ++ EAA AYD AAIK  G  AVTNF+ + Y  +
Sbjct: 318 RHHQHGRWQARIGRVAGNKDLYLGTFGTQEEAAEAYDIAAIKFRGLSAVTNFDMNRYNVK 377

Query: 329 MITE 332
            I E
Sbjct: 378 AILE 381

Transcription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	510
255578779	499	Protein AINTEGUMENTA, putative [Ricinus	0.925	0.945	0.661	1e-170
359479031	500	PREDICTED: ethylene-responsive transcrip	0.935	0.954	0.649	1e-159
297746184	478	unnamed protein product [Vitis vinifera]	0.915	0.976	0.644	1e-152
356547208	476	PREDICTED: ethylene-responsive transcrip	0.907	0.972	0.623	1e-150
449461037	497	PREDICTED: ethylene-responsive transcrip	0.952	0.977	0.595	1e-148
356557477	485	PREDICTED: ethylene-responsive transcrip	0.911	0.958	0.608	1e-148
356544634	477	PREDICTED: ethylene-responsive transcrip	0.913	0.976	0.579	1e-136
356541277	477	PREDICTED: ethylene-responsive transcrip	0.913	0.976	0.589	1e-133
350540116	496	AP2 transcription factor SlAP2d [Solanum	0.931	0.957	0.568	1e-132
357472461	469	Transcription factor APETALA2 [Medicago	0.905	0.985	0.555	1e-125

>gi|255578779|ref|XP_002530247.1| Protein AINTEGUMENTA, putative [Ricinus communis] gi|223530251|gb|EEF32153.1| Protein AINTEGUMENTA, putative [Ricinus communis]

 Score =  604 bits (1558), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 355/537 (66%), Positives = 389/537 (72%), Gaps = 65/537 (12%)

Query: 1   MLDLNLNVMSIESTQQNSDEERVGSVVLVEKS---------------PEGSSGTSNSSVV 45
           MLDLNLNV S ESTQ       V SV L+EK                 EGS  TSNSS+ 
Sbjct: 1   MLDLNLNVESSESTQN------VDSVTLMEKYQYQYQYQYQHQQYNYTEGSGTTSNSSIA 54

Query: 46  NADASSNVGDDESCSTRAVAG------------DNSVFTFNFDILKVGGDSGNVRNENVE 93
           NADASSN   DESCSTRA  G             N ++TFNFDILKVG         N E
Sbjct: 55  NADASSN---DESCSTRAYTGGDTISTTTDSNNKNKIYTFNFDILKVG---------NEE 102

Query: 94  QNNAASRKEFAFFPASGGGENGGGQSSGSWIDLSFDKQQQQYQNQQPQQQEGGGEVRVTQ 153
             N A       FP     ENG G      IDLSF++QQQQ +         GGEVRV Q
Sbjct: 103 NENGAVIGTKELFPV----ENGHG------IDLSFERQQQQQEIIGV-----GGEVRVMQ 147

Query: 154 QSSPVVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDR 213
           Q    VKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDR
Sbjct: 148 QPLQQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDR 207

Query: 214 AAIKFRGVDADINFNLADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKC 273
           AAIKFRG+DADINFNL DY++D+KQMKNLTKEEFVHILRR STGFSRGSSKYRGVTLHKC
Sbjct: 208 AAIKFRGIDADINFNLGDYDEDLKQMKNLTKEEFVHILRRHSTGFSRGSSKYRGVTLHKC 267

Query: 274 GRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEGEMITEG 333
           GRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEGEMI++ 
Sbjct: 268 GRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEGEMISKA 327

Query: 334 SNEGGDHNLDLNLGISSSFGSGPKANEGHSQFLSGPYGAHGGRTSRTENSTTAAVGDSAS 393
           S+EG +HNLDLNLGIS SFG+  K NEGH Q  SGPY  +  ++SR EN+T+A VGD   
Sbjct: 328 SSEGSEHNLDLNLGISPSFGNCLKENEGHQQLHSGPYDVY-SKSSR-ENATSAMVGDPPF 385

Query: 394 KGLMRTSEHPIFWNGAYPGLLTTEEKATEKRIELGPPQGLPNWAWQMHGQVSGTPASLLS 453
           KG +RTS+HP+FWNG YP     EE+AT+KRIELG  QG PNWAWQMHGQV+ TP ++ S
Sbjct: 386 KGPLRTSDHPMFWNGIYPNFFPHEERATDKRIELGSSQGHPNWAWQMHGQVTATPMTMFS 445

Query: 454 SAASSGFPFSAAPPSAAVLSSKPLNPSDVNLCFTSTNTTAPNTSQFYYQMKLPQAPP 510
           +AASSGF FSA PPSAA+  SKPLNP+  NL F+   T     SQFY  +K PQAPP
Sbjct: 446 TAASSGFSFSATPPSAAIFPSKPLNPAAHNLFFSPHATGG---SQFYRPVKPPQAPP 499

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359479031|ref|XP_002284749.2| PREDICTED: ethylene-responsive transcription factor RAP2-7-like [Vitis vinifera]

 Score =  568 bits (1465), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 346/533 (64%), Positives = 382/533 (71%), Gaps = 56/533 (10%)

Query: 1   MLDLNLNVMSIESTQQNSDEERVGSVVLVEKSPEGS------SGTSNSSVVNADASSNVG 54
           MLDLNLNV S +STQ         SVV  EK PEGS      SGTSNSS+VNA+ASSN G
Sbjct: 1   MLDLNLNVGSSDSTQHGD------SVVGSEKFPEGSGTQMDESGTSNSSIVNAEASSNGG 54

Query: 55  -DDESCSTRAVAGDNSVFTFNFDILKVGGDSGNVRNENVEQNNAASRKEFAFFPASGGGE 113
            DD+SCSTRA  GD   F+ NFDILKVG D G+        N+  +R+    FP S GG 
Sbjct: 55  GDDDSCSTRA--GD--AFSLNFDILKVG-DCGS-------PNDVVTRQ---LFPMSAGGG 99

Query: 114 NGG------GQSSGSWIDLSFDKQQQQYQNQQPQQQEGGGEVRVTQQSSPV------VKK 161
            GG      GQSS +WIDLSF++              GG EVRV QQ          VKK
Sbjct: 100 VGGDSVFFQGQSSSNWIDLSFNQSGTV----------GGQEVRVAQQHPQPQQQQQPVKK 149

Query: 162 SRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGV 221
           SRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGV
Sbjct: 150 SRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGV 209

Query: 222 DADINFNLADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMG 281
           DADINFNL+DY++D+KQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMG
Sbjct: 210 DADINFNLSDYDEDLKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMG 269

Query: 282 QFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEGEMITEGSNEGGDHN 341
           QFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEGEMI E SNEG DHN
Sbjct: 270 QFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEGEMIPEASNEGSDHN 329

Query: 342 LDLNLGISSSFGSGPKANE--GHSQFLSGPYGAHGGRTSRTENSTTAAVGDSASKGLMRT 399
           LDLNLGIS    +GPK  +  GH QF SG + AH GR S  EN      GD + KGL  T
Sbjct: 330 LDLNLGISPPLSNGPKEIDGLGHLQFHSGSHDAHNGRRSMMENPNIETAGDPSFKGLAMT 389

Query: 400 SEHPIFWNGAYPGLLT-TEEKATEKRIELGPPQGLPNWAWQMHGQVSGTPASLL-SSAAS 457
           SEHP  W G YP      EE+ATE+RIE    QGLPNW WQMHGQV+ TP  L  ++A+S
Sbjct: 390 SEHPPLWTGVYPSFFPGYEERATERRIEASSSQGLPNWGWQMHGQVTATPMPLFSTAASS 449

Query: 458 SGFPFSAAPPSAAVLSSKPLNPSDVNLCFTSTNTTAPNTSQFYYQMKLPQAPP 510
                +   PSAA+LSSKP N +  ++CF S+ +   + SQ+Y+QMK P  PP
Sbjct: 450 GFSSSATTAPSAAILSSKPPNTTSHSICFASSASAVTHPSQYYFQMKPP--PP 500

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297746184|emb|CBI16240.3| unnamed protein product [Vitis vinifera]

 Score =  545 bits (1404), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 336/521 (64%), Positives = 370/521 (71%), Gaps = 54/521 (10%)

Query: 1   MLDLNLNVMSIESTQQNSDEERVGSVVLVEKSPEGS------SGTSNSSVVNADASSNVG 54
           MLDLNLNV S +STQ         SVV  EK PEGS      SGTSNSS+VNA+ASSN G
Sbjct: 1   MLDLNLNVGSSDSTQHGD------SVVGSEKFPEGSGTQMDESGTSNSSIVNAEASSNGG 54

Query: 55  -DDESCSTRAVAGDNSVFTFNFDILKVGGDSGNVRNENVEQNNAASRKEFAFFPASGGGE 113
            DD+SCSTRA  GD   F+ NFDILKVG D G+        N+  +R+    FP S GG 
Sbjct: 55  GDDDSCSTRA--GD--AFSLNFDILKVG-DCGS-------PNDVVTRQ---LFPMSAGGG 99

Query: 114 NGGGQSSGSWIDLSFDKQQQQYQNQQPQQQEGGGEVRVTQQSSPVVKKSRRGPRSRSSQY 173
            GG        D  F      +Q Q  QQ          QQ    VKKSRRGPRSRSSQY
Sbjct: 100 VGG--------DSVF------FQGQVAQQHP------QPQQQQQPVKKSRRGPRSRSSQY 139

Query: 174 RGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLADYE 233
           RGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNL+DY+
Sbjct: 140 RGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLSDYD 199

Query: 234 DDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGL 293
           +D+KQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGL
Sbjct: 200 EDLKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGL 259

Query: 294 FDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEGEMITEGSNEGGDHNLDLNLGISSSFG 353
           FDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEGEMI E SNEG DHNLDLNLGIS    
Sbjct: 260 FDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEGEMIPEASNEGSDHNLDLNLGISPPLS 319

Query: 354 SGPKANE--GHSQFLSGPYGAHGGRTSRTENSTTAAVGDSASKGLMRTSEHPIFWNGAYP 411
           +GPK  +  GH QF SG + AH GR S  EN      GD + KGL  TSEHP  W G YP
Sbjct: 320 NGPKEIDGLGHLQFHSGSHDAHNGRRSMMENPNIETAGDPSFKGLAMTSEHPPLWTGVYP 379

Query: 412 GLLT-TEEKATEKRIELGPPQGLPNWAWQMHGQVSGTPASLL-SSAASSGFPFSAAPPSA 469
                 EE+ATE+RIE    QGLPNW WQMHGQV+ TP  L  ++A+S     +   PSA
Sbjct: 380 SFFPGYEERATERRIEASSSQGLPNWGWQMHGQVTATPMPLFSTAASSGFSSSATTAPSA 439

Query: 470 AVLSSKPLNPSDVNLCFTSTNTTAPNTSQFYYQMKLPQAPP 510
           A+LSSKP N +  ++CF S+ +   + SQ+Y+QMK P  PP
Sbjct: 440 AILSSKPPNTTSHSICFASSASAVTHPSQYYFQMKPP--PP 478

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356547208|ref|XP_003542008.1| PREDICTED: ethylene-responsive transcription factor RAP2-7-like [Glycine max]

 Score =  536 bits (1381), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 325/521 (62%), Positives = 368/521 (70%), Gaps = 58/521 (11%)

Query: 1   MLDLNLNVMSIESTQQNSDEERVGSVVLVEKSPEGSSGTSNSSVVNADASSNVGDDESCS 60
           MLDLNL   + ESTQ  +DE     +VL++K PE SSGTSNSS+VNA+ SSN   ++SCS
Sbjct: 1   MLDLNL---TAESTQ--NDE----LLVLLDKFPEASSGTSNSSIVNAEGSSN---EDSCS 48

Query: 61  TRAVAGDNSVFTFNFDILKVGGDSGNVRNENVEQNNAASRKEFAFFPASGGGENGGGQSS 120
           TRA  GD  VFTFNF ILKV   +  V         AA+ KE   FP S   EN  GQSS
Sbjct: 49  TRA--GD--VFTFNFGILKVEAANDVV---------AAATKEL--FPVSS--ENWQGQSS 91

Query: 121 -------GSWIDLSFDKQQQQYQNQQPQQQEGGGEVRVTQ-QSSPVVKKSRRGPRSRSSQ 172
                   S +DLS D+Q               GEV+V Q Q  P VKKSRRGPRSRSSQ
Sbjct: 92  TSLFQARKSLMDLSLDQQH--------------GEVKVVQVQPQPKVKKSRRGPRSRSSQ 137

Query: 173 YRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLADY 232
           YRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRG+DADINFNL DY
Sbjct: 138 YRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGLDADINFNLVDY 197

Query: 233 EDDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLG 292
           E+D+KQMKNL+KEEFVHILRR S+GFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLG
Sbjct: 198 EEDLKQMKNLSKEEFVHILRRHSSGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLG 257

Query: 293 LFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEGEMITEGSNEGGDHNLDLNLGISSSF 352
           LFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYE EM  E  NEGG H+LDL+LGI++  
Sbjct: 258 LFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYESEMKPEAINEGGSHDLDLSLGIATP- 316

Query: 353 GSGPKANEGHSQFLSGPYGAHGGRTSRTENSTTAAVGDSASKGLMRTSEHPIFWNGAYPG 412
           G GPK N GH QF S PY  H GR+S  E +  + +GD + K L+ T E P  WN AY  
Sbjct: 317 GHGPKENRGHLQFQSIPYNMHPGRSSMMETNINSVIGDPSLKRLVVTEERPSVWNAAYST 376

Query: 413 LLTTEEKATEKRIELGPPQGL--PNWAWQMHGQVSGTPASLLSSAASSGFPFSAAPPSAA 470
                E+A  +R+   P +G+  PNWAWQ HGQV+ TP    S+AASSGF  SA  PS A
Sbjct: 377 FFPNLERA--ERMGTDPSKGVPNPNWAWQTHGQVTDTPVPPFSTAASSGFSISATFPSTA 434

Query: 471 VLSSKPLNPSDVNLCFTSTNTTAPNTSQF--YYQMKLPQAP 509
           +  +K +N    +LCFTS +T   N  QF  YY++K PQ P
Sbjct: 435 IFPTKSINSVPHSLCFTSPSTPGSNAPQFYNYYEVKSPQPP 475

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461037|ref|XP_004148250.1| PREDICTED: ethylene-responsive transcription factor RAP2-7-like [Cucumis sativus] gi|449515297|ref|XP_004164686.1| PREDICTED: ethylene-responsive transcription factor RAP2-7-like [Cucumis sativus]

 Score =  533 bits (1372), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 310/521 (59%), Positives = 359/521 (68%), Gaps = 35/521 (6%)

Query: 1   MLDLNLNVMSIESTQQNSDEERVGSVVLVEKSPEGS------SGTSNSSVVNADASSNVG 54
           M DLNLNV S ++ Q+        SVV  EK P+GS      SGTSNSS+VNAD SSN G
Sbjct: 1   MFDLNLNVDSPDAAQKED------SVVFFEKLPQGSGNQMDESGTSNSSIVNADTSSNGG 54

Query: 55  DDESCSTRAVAGDNSVFTFNFDILKVGGDSGNVRNENVEQNNAASRKEFAFFPASGGGEN 114
           DD+SCSTRA      +FTFNF+ILK G  + +V  + +         +F          +
Sbjct: 55  DDDSCSTRA---GGELFTFNFEILKAG-SANDVVTKELFPIGGTVNADFGILQGHNSASS 110

Query: 115 GGGQSSGSWIDLSFDKQQQQYQNQQPQQQEGGGEVRVTQQSSP-VVKKSRRGPRSRSSQY 173
               S  +WI+L+FD+                GE R  Q   P  VKKSRRGPRSRSSQY
Sbjct: 111 SSTSSRKNWINLAFDRSGS------------AGEGRTVQPVQPQPVKKSRRGPRSRSSQY 158

Query: 174 RGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLADYE 233
           RGVTFYRRTGRWESHIWDCGKQVYLGGFDTAH+AARAYDRAAIKFRGVDADINFNL+DYE
Sbjct: 159 RGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHSAARAYDRAAIKFRGVDADINFNLSDYE 218

Query: 234 DDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGL 293
           DD+KQMKNL+KEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQ LGKKYIYLGL
Sbjct: 219 DDLKQMKNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQLLGKKYIYLGL 278

Query: 294 FDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEGEMITEGSNEGGDHNLDLNLGIS-SSF 352
           FDSEVEAARAYDKAAIKCNGREAVTNFEPSTY GE I+EGS+EGG + LDLNLGIS  S 
Sbjct: 279 FDSEVEAARAYDKAAIKCNGREAVTNFEPSTY-GEKISEGSSEGGWNMLDLNLGISPPSL 337

Query: 353 GSGPKANEGHSQFLSGPYGAHGGRTSRTENSTTAAVGDSASKGLMRTSEHPIFWNGAYPG 412
            + PK +EGH +F SG   A+  R++  E++  AAVGD   KG + TSEH   WNG    
Sbjct: 338 DNSPKDSEGHLRFQSGSCYAN-ERSTMMESNADAAVGDPPMKGPVITSEHAPLWNGLQTS 396

Query: 413 LLTTEEKATEKRIELGPPQGL-PNWAWQMHGQVSGTPASLLSSAASSGFPFSAAPPSAAV 471
              +EE  TEKR+ LG  QG+ PNW WQ+H QV+ T   L S+AASSGF FSA    AA+
Sbjct: 397 FFPSEEIVTEKRLALGSSQGIPPNWGWQIHSQVNATQVPLFSAAASSGFSFSATHFPAAI 456

Query: 472 LSSKPLNPSDVNLCFTSTNTTAPNTSQFYYQMKL--PQAPP 510
                   +  NL FT+   +  N+ Q+++  +L   QAPP
Sbjct: 457 HPLCRPGSTAHNLHFTTPKASTLNSPQYHHHHQLNPQQAPP 497

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557477|ref|XP_003547042.1| PREDICTED: ethylene-responsive transcription factor RAP2-7-like [Glycine max]

 Score =  531 bits (1368), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 311/511 (60%), Positives = 356/511 (69%), Gaps = 46/511 (9%)

Query: 1   MLDLNLNVMSIESTQQNSDEERVGSVVLVEKSPEGSSGTSNSSVVNADASSNVGDDESCS 60
           MLDLNLN    ESTQ N       S+VL++K PE S GTSNSSVVNA+ SSN   ++SCS
Sbjct: 1   MLDLNLNA---ESTQNNE------SLVLLDKFPEASLGTSNSSVVNAEGSSN---EDSCS 48

Query: 61  TRAVAGDNSVFTFNFDILKVGGDSGNVRNENVEQNNAASRKEFAFFPASGGGENGGGQSS 120
           TRA  GD  VF F+F ILKV G      NE V    A + KE   FP S          S
Sbjct: 49  TRA--GD--VFAFSFGILKVEG-----ANEVV----ATATKEL--FPVS----------S 83

Query: 121 GSWIDLSFDKQQQQYQNQQ--PQQQEGGGEVRVTQQSSPVVKKSRRGPRSRSSQYRGVTF 178
            +W   S     Q  +N    P   + G    V  Q  P VKKSRRGPRSRSSQYRGVTF
Sbjct: 84  ENWQGQSSTSSSQARKNLMDLPLDHQNGEVKVVQVQPQPQVKKSRRGPRSRSSQYRGVTF 143

Query: 179 YRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLADYEDDMKQ 238
           YRRTGRWESHIWDCGKQVYLGGFDTAH AARAYDRAAIKFRG+DADINF+L DYE+D+KQ
Sbjct: 144 YRRTGRWESHIWDCGKQVYLGGFDTAHIAARAYDRAAIKFRGLDADINFDLVDYEEDLKQ 203

Query: 239 MKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEV 298
           MKNL+K+EFVHILRR STGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEV
Sbjct: 204 MKNLSKQEFVHILRRHSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEV 263

Query: 299 EAARAYDKAAIKCNGREAVTNFEPSTYEGEMITEGSNEGGDHNLDLNLGISSSFGSGPKA 358
           EAARAYDKAAIKCN REAVTNFEPS YE EM  E  NEGG H+LDLNLGI++  G GPK 
Sbjct: 264 EAARAYDKAAIKCNRREAVTNFEPSIYESEMKPEAINEGGSHDLDLNLGIATP-GHGPKE 322

Query: 359 NEGHSQFLSGPYGAHGGRTSRTENSTTAAVGDSASKGLMRTSEHPIFWNGAYPGLLTTEE 418
           N GH QF S PY  H GR+SR E +  + +GD + K L+ T E P  ++  +P L    E
Sbjct: 323 NRGHLQFQSIPYNMHPGRSSRMETNVNSVIGDPSLKRLVVTEERPSVYSTFFPNL----E 378

Query: 419 KATEKRIELGPPQGLPNWAWQMHGQVSGTPASLLSSAASSGFPFSAAPPSAAVLSSKPLN 478
           +A  +R+ + P +G+PNWAWQ +GQV+ TP    S+AASSGF  SA  PS A+  +K +N
Sbjct: 379 RA--ERMGIDPSKGVPNWAWQTNGQVNATPVPPFSTAASSGFSISATFPSTAIFPTKSMN 436

Query: 479 PSDVNLCFTSTNTTAPNTSQFYYQMKLPQAP 509
           P   + C TS +T   N  QFYY++K  QAP
Sbjct: 437 PIPQSFCITSHSTPGSNAPQFYYEVKSSQAP 467

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544634|ref|XP_003540753.1| PREDICTED: ethylene-responsive transcription factor RAP2-7-like [Glycine max]

 Score =  491 bits (1264), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 302/521 (57%), Positives = 350/521 (67%), Gaps = 55/521 (10%)

Query: 1   MLDLNLNVMSIESTQQNSDEERVGSVVLVEKSPEGS------SGTSNSSVVNADASSNVG 54
           MLDLNLN    +S   N D     S +  +K PEGS      SGTSNSSVVNAD SSN G
Sbjct: 1   MLDLNLNAEWTDSFS-NGD-----SPLPSQKFPEGSRNQMAESGTSNSSVVNADGSSNGG 54

Query: 55  DDE-SCSTRAVAGDNSVFTFNFDILKVGGDSGNVRNENVEQNNAASRKEFAFFPASGGGE 113
            DE SCSTRA   D+   TFNFDILKV G +  V  E               FP    G 
Sbjct: 55  GDEDSCSTRA---DDVYTTFNFDILKVEGANDVVTKE--------------LFPVMSEGA 97

Query: 114 NGGGQSSGS----WIDLSFDKQQQQYQNQQPQQQEGGGEVRVTQQSSPVVKKSRRGPRSR 169
            G   SS S    ++DLSFD++     + + +  +   + +   Q+    KKSRRGPRSR
Sbjct: 98  KGHATSSFSARNGFVDLSFDREGG---DSEMKMLQPQNQPQTQTQTQQPAKKSRRGPRSR 154

Query: 170 SSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNL 229
           SSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNL
Sbjct: 155 SSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNL 214

Query: 230 ADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYI 289
           +DYEDD+KQMKNL+KEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKK  
Sbjct: 215 SDYEDDLKQMKNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKK-- 272

Query: 290 YLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEGEMITEGSNEGGDHNLDLNLGIS 349
                        AYDKAAIKCNGREAVTNFEPSTYEGEM +   NEGG  NLDLNLGI+
Sbjct: 273 -------------AYDKAAIKCNGREAVTNFEPSTYEGEMKSAAINEGGGQNLDLNLGIA 319

Query: 350 SSFGSGPKANEGHSQFLSGPYGAHGGRTSRTENSTTAAVGDSASKGLMRTSEHPIFWNGA 409
           +  G GPK N G   F S PY  HGGR+S+ E +  + +G+ + K ++ T + P  WNG 
Sbjct: 320 TP-GPGPKENWGQLHFPSIPYNTHGGRSSKMETNVNSGIGNPSLKRMVVTEDRPSLWNGM 378

Query: 410 YPGLLTTEEKATEKRIELGPPQGLPNWAWQMHGQVSGTPASLLSSAASSGFPFSAAPPSA 469
            P      E+A  +RI + P +GLPNWAWQ HGQV+ TP    S+AASSGF  SA  PS 
Sbjct: 379 SPNFFPNGERA--ERIGIDPSKGLPNWAWQTHGQVNATPVPSFSAAASSGFSISATFPST 436

Query: 470 AVLSSKPLNPSDVNLCFTSTNTTAPNTSQFYYQMKLPQAPP 510
           A+  +  +N    +LCFTS+++   N S++YYQ+K PQAPP
Sbjct: 437 AIFPTSSMNSIPQSLCFTSSSSPTRNVSEYYYQVKPPQAPP 477

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356541277|ref|XP_003539105.1| PREDICTED: ethylene-responsive transcription factor RAP2-7-like [Glycine max]

 Score =  482 bits (1240), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 302/512 (58%), Positives = 342/512 (66%), Gaps = 46/512 (8%)

Query: 1   MLDLNLNVMSIESTQQNSDEERVGSVVLVEKSPEG------SSGTSNSSVVNADASSNVG 54
           MLDLNLN    E T   S+ E   S + +EK P+G       SGTSNSSVVNAD SSN G
Sbjct: 1   MLDLNLNA---EWTDSFSNGE---SPLPLEKFPDGLRNQMAESGTSNSSVVNADGSSNGG 54

Query: 55  DDE-SCSTRAVAGDNSVFTFNFDILKVGGDSGNVRNENVEQNNAASRKEFAFFPASGGGE 113
            DE S STRA   D+   TFNFDILKV G +G V  E               FP    G 
Sbjct: 55  GDEDSDSTRAA--DDVYTTFNFDILKVEGANGFVTKE--------------LFPVMSEGA 98

Query: 114 NGGGQSSGS----WIDLSFDKQQQQYQNQQPQQQEGGGEVRVTQQSSPVVKKSRRGPRSR 169
            G   SS S    ++DLSFD         +  Q +   + +   Q+    KKSRRGPRSR
Sbjct: 99  KGHATSSFSGTNGFVDLSFDGDGGNTSEMKMLQPQNQNQTQTRTQTQQPAKKSRRGPRSR 158

Query: 170 SSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNL 229
           SSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNL
Sbjct: 159 SSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNL 218

Query: 230 ADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYI 289
           +DYEDD+KQM+NL+KEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYI
Sbjct: 219 SDYEDDLKQMQNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYI 278

Query: 290 YLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEGEMITEGSNEGGDHNLDLNLGIS 349
           YLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEGE+ +   NEGG  NLDLNLGI+
Sbjct: 279 YLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEGELKSAAINEGGSQNLDLNLGIA 338

Query: 350 SSFGSGPKANEGHSQFLSGPYGAHGGRTSRTENSTTAAVGDSASKGLMRTSEHPIFWNGA 409
           +     PK N G  QF S PY  HGGR           +G+ + K ++   + P   N  
Sbjct: 339 TP--GPPKENWGQLQFPSFPYNTHGGRR----------IGNPSLKRMVAKKDRPSLRNAM 386

Query: 410 YPGLLTTEEKATEKRIELGPPQGLPNWAWQMHGQVSGTPASLLSSAASSGFPFSAAPPSA 469
                   ++  E RI + P  GLPNWAWQ HGQV+ TP    S+AASSGF  SA  PSA
Sbjct: 387 SLNFFPNGQERAE-RIGVDPSNGLPNWAWQTHGQVNATPVPTFSAAASSGFSISATFPSA 445

Query: 470 AVLSSKPLNPSDVNLCFTSTNTTAPNTSQFYY 501
           A+  +  +N    +LCFTS++    N S++YY
Sbjct: 446 AIFPTSSMNSIPQSLCFTSSSMPTRNASEYYY 477

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350540116|ref|NP_001234647.1| AP2 transcription factor SlAP2d [Solanum lycopersicum] gi|333123373|gb|AEF28822.1| AP2 transcription factor SlAP2d [Solanum lycopersicum]

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 301/529 (56%), Positives = 349/529 (65%), Gaps = 54/529 (10%)

Query: 1   MLDLNLNVMSIESTQQNSDEERVGSVVLVEKSPEGSSGTSNSSVVNADASSNVGDDESCS 60
           MLDLNLN +  +     +DE                SG+SNSS  N +ASS+ GDDE+CS
Sbjct: 2   MLDLNLNAI-YDGKHSLADE----------------SGSSNSSARNVEASSSAGDDETCS 44

Query: 61  TRAVAGDNSVFTFNFDILKVGGDSG---------NVRNENVEQNNAASRKEFA---FFPA 108
           TRA AGD  +F FNFDILKVGG            +  N + E+    +R +F     FP 
Sbjct: 45  TRA-AGD--MFAFNFDILKVGGGGSGSGGGETRRSCSNNDDEEGYDENRSDFVTQQLFPM 101

Query: 109 SGGGENGGGQSS--GSWIDLSFDKQQQQYQNQQPQQQEGGGEVRVTQQSSPV---VKKSR 163
               E     +S    W+D S D          P       EV+   +       VKKSR
Sbjct: 102 DNNXELNRTHTSRRPDWVDPSVD----------PPNTVSFREVQQMGRLQQQQQPVKKSR 151

Query: 164 RGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDA 223
           RGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDA
Sbjct: 152 RGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDA 211

Query: 224 DINFNLADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQF 283
           DINFNL+DYE+DMKQMKNL+KEEFVH+LRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQF
Sbjct: 212 DINFNLSDYEEDMKQMKNLSKEEFVHVLRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQF 271

Query: 284 LGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEGEMITEGSNEGGDHNLD 343
           LGKKYIYLGLFDSEVEAARAYDKAAIKCNGRE VTNFEPS YEGE+ +   +EG   +LD
Sbjct: 272 LGKKYIYLGLFDSEVEAARAYDKAAIKCNGRETVTNFEPSAYEGEINSNPQSEGSQQDLD 331

Query: 344 LNLGISSSFGSGPKANEGHSQFLSGPYGAHGGRTSRTENSTTAAVGDSASKGL-MRTSEH 402
           LNLGI++   S PK  E  S F   PY       S+ + S +  VG S  K L   TSE 
Sbjct: 332 LNLGIAT---SSPKEVERSSSFQYHPYDMQEASKSQMDKSGSPIVGSSHYKALPAVTSEQ 388

Query: 403 PIFWNGAYPGLLTT-EEKATEKRIELGPPQGLPNWAWQMHGQVSGTPASLLSSAASSGFP 461
              WNGAY  L+   EE+ + KRI++G   G PNWA QMH QV  TP S+ S+AASSGF 
Sbjct: 389 AHLWNGAYSNLIPNYEERVSGKRIDVGTSHGHPNWAMQMHSQVGTTPLSMFSAAASSGFS 448

Query: 462 FSAAPPSAAVLSSKPLNPSDVNLCFTSTNTTAPNTSQFYYQMKLPQAPP 510
             A   SA+ +S  P NP+ +NL F S ++ + NT+Q+YYQ++ PQ PP
Sbjct: 449 TPATTASASQISG-PNNPNTLNLSFASYSSPSTNTAQYYYQIR-PQLPP 495

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357472461|ref|XP_003606515.1| Transcription factor APETALA2 [Medicago truncatula] gi|355507570|gb|AES88712.1| Transcription factor APETALA2 [Medicago truncatula]

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 286/515 (55%), Positives = 337/515 (65%), Gaps = 53/515 (10%)

Query: 1   MLDLNLNVMSIESTQQNSDEERVGSVVLVEKSPE--GSSGTSNSSVVNADASSNVGDDES 58
           MLDLNLN  +   + QN +     S ++ +  P+    SGTSNSS+VNAD     GD++S
Sbjct: 1   MLDLNLNDSNSTDSTQNQNH---NSPMISKNFPQTVDESGTSNSSIVNAD-----GDEDS 52

Query: 59  CSTRAVAGDNSVFTFNFDILKVGGDSGNVRNENVEQNNAASRKEFAFFPASGGGENGGGQ 118
           CSTR        FT +FDILK  G + N         N  +++   FFP      +    
Sbjct: 53  CSTRD-------FTLSFDILKTEGSNSN---------NVVTKE---FFPVKLQATSSSFS 93

Query: 119 SSGSWIDLSFDKQQQQYQNQQPQQQEGGGEVRVTQQSSPVVKKSRRGPRSRSSQYRGVTF 178
                +D S ++ ++    Q PQQ                VKKSRRGPRSRSSQYRGVTF
Sbjct: 94  MKNGSVDFSINQNEEMKIVQAPQQ----------------VKKSRRGPRSRSSQYRGVTF 137

Query: 179 YRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLADYEDDMKQ 238
           YRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGV ADINFNL DY+DD+KQ
Sbjct: 138 YRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVGADINFNLNDYDDDLKQ 197

Query: 239 MKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEV 298
            KNL+KEEFV ILRRQS GFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEV
Sbjct: 198 TKNLSKEEFVQILRRQSNGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEV 257

Query: 299 EAARAYDKAAIKCNGREAVTNFEPSTYEGEMITEGSNEGGDHNLDLNLGISSSFGSGPKA 358
           EAARAYDKAAI+ NGREA+TNFE STYEGEM +   NEGG  NLDLNLGI++  G  P+ 
Sbjct: 258 EAARAYDKAAIQNNGREAMTNFEASTYEGEMKSAAINEGGSQNLDLNLGIATP-GPSPRE 316

Query: 359 NEGHSQFLSG-PYGAHGGRTSRTENSTTAAVGDSASKGLMRTSEHPIFWNGAYPGLLTTE 417
           N G   F S  PY    GR+S+ E +  + +GD + K L+ T E    WNG YP   + E
Sbjct: 317 NWGQLHFPSSVPYTMQAGRSSKME-TNVSGIGDPSLKRLLATEERHSLWNGMYPAFFSNE 375

Query: 418 EKATEKRIELGPPQGLPNWAWQMHGQVS--GTPASLLSSAASSGFPFSAAP-PSAAVLSS 474
           E+A    I   PP+GLPNWAWQ HG V+    P    ++AASSGF  ++AP PS  +   
Sbjct: 376 ERADS--INKAPPKGLPNWAWQPHGLVTASPVPPVSAAAAASSGFSINSAPIPSTRMFPP 433

Query: 475 KPLNPSDVNLCFTSTNTTAPNTSQFYYQMKLPQAP 509
           + +N    +L FTS N    N S +YYQ+K PQAP
Sbjct: 434 RSMNSIPQSLYFTSPNAPNGNRSPYYYQVKPPQAP 468

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	510
TAIR|locus:2005493	432	AP2 "APETALA 2" [Arabidopsis t	0.392	0.462	0.705	3.9e-76
TAIR|locus:2155598	352	TOE3 "target of early activati	0.384	0.556	0.698	1.1e-73
TAIR|locus:2082732	346	SMZ "SCHLAFMUTZE" [Arabidopsis	0.286	0.421	0.525	2.2e-44
TAIR|locus:2056048	325	SNZ "SCHNARCHZAPFEN" [Arabidop	0.229	0.36	0.555	2.5e-40
TAIR|locus:2091891	574	PLT1 "PLETHORA 1" [Arabidopsis	0.366	0.325	0.435	9.9e-39
TAIR|locus:2173009	558	AIL5 "AINTEGUMENTA-like 5" [Ar	0.347	0.317	0.452	3.4e-38
TAIR|locus:2008216	568	PLT2 "PLETHORA 2" [Arabidopsis	0.317	0.285	0.479	7e-38
TAIR|locus:2030265	415	AT1G72570 [Arabidopsis thalian	0.356	0.438	0.435	1.5e-37
TAIR|locus:2155680	498	AIL7 "AINTEGUMENTA-like 7" [Ar	0.356	0.365	0.459	4.9e-37
TAIR|locus:2137559	555	ANT "AINTEGUMENTA" [Arabidopsi	0.364	0.335	0.431	4.9e-37

TAIR|locus:2005493 AP2 "APETALA 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 767 (275.1 bits), Expect = 3.9e-76, P = 3.9e-76
 Identities = 144/204 (70%), Positives = 162/204 (79%)

Query:   151 VTQQSSPVVKKXXXXXXXXXXQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTXXXXXXX 210
             V + + P+ KK          QYRGVTFYRRTGRWESHIWDCGKQVYLGGFDT       
Sbjct:   111 VVEPAQPL-KKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARA 169

Query:   211 XXXXXIKFRGVDADINFNLADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTL 270
                  IKFRGV+ADINFN+ DY+DD+KQM NLTKEEFVH+LRRQSTGF RGSSKYRGVTL
Sbjct:   170 YDRAAIKFRGVEADINFNIDDYDDDLKQMTNLTKEEFVHVLRRQSTGFPRGSSKYRGVTL 229

Query:   271 HKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEGEMI 330
             HKCGRWEARMGQFLGKKY+YLGLFD+EVEAARAYDKAAIKCNG++AVTNF+PS Y+ E+ 
Sbjct:   230 HKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDKAAIKCNGKDAVTNFDPSIYDEELN 289

Query:   331 TEGSNEGG---DHNLDLNLGISSS 351
              E S       DHNLDL+LG S++
Sbjct:   290 AESSGNPTTPQDHNLDLSLGNSAN 313

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;ISS;TAS

GO:0010093 "specification of floral organ identity" evidence=IMP

GO:0048316 "seed development" evidence=IMP

GO:0010073 "meristem maintenance" evidence=IMP

GO:0009888 "tissue development" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA;TAS

GO:0048481 "ovule development" evidence=IGI

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009908 "flower development" evidence=TAS

GO:0019953 "sexual reproduction" evidence=TAS

TAIR|locus:2155598 TOE3 "target of early activation tagged (EAT) 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 744 (267.0 bits), Expect = 1.1e-73, P = 1.1e-73
 Identities = 137/196 (69%), Positives = 152/196 (77%)

Query:   156 SPVVKKXXXXXXXXXXQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTXXXXXXXXXXXX 215
             SP +KK          QYRGVTFYRRTGRWESHIWDCGKQVYLGGFDT            
Sbjct:    80 SPPIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAA 139

Query:   216 IKFRGVDADINFNLADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGR 275
             IKFRGVDADINF++ DY DD+KQM NLTKEEF+H+LRRQSTGF RGSSKYRGVTLHKCGR
Sbjct:   140 IKFRGVDADINFDIEDYLDDLKQMGNLTKEEFMHVLRRQSTGFPRGSSKYRGVTLHKCGR 199

Query:   276 WEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEGEMITEGSN 335
             WE+R+GQFL KKY+YLGLFD+E+EAARAYDKAAIKCNG++AVTNF+P  YE E       
Sbjct:   200 WESRLGQFLNKKYVYLGLFDTEIEAARAYDKAAIKCNGKDAVTNFDPKVYEEEEDLSSET 259

Query:   336 EGGDHNLDLNLGISSS 351
                 HNL L+LG SSS
Sbjct:   260 TRNGHNLGLSLGESSS 275

GO:0003677 "DNA binding" evidence=IEA;ISS;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS;TAS

GO:0009408 "response to heat" evidence=ISS

GO:0007275 "multicellular organismal development" evidence=ISS

TAIR|locus:2082732 SMZ "SCHLAFMUTZE" [Arabidopsis thaliana (taxid:3702)]

 Score = 394 (143.8 bits), Expect = 2.2e-44, Sum P(3) = 2.2e-44
 Identities = 84/160 (52%), Positives = 98/160 (61%)

Query:   153 QQSSPVVKKXXXXXXXXXXQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTXXXXXXXXX 212
             + +  +VKK          QYRGVTFYRRTGRWESHIWDCGKQVYLGGFDT         
Sbjct:   103 RNTQKMVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAYAAARAYD 162

Query:   213 XXXIKFRGVDADINFNLADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHK 272
                IKFRG+DADINF + DY  D+ +MKNL K EFV  LRR+S  F RGSSKY+G+ L K
Sbjct:   163 RAAIKFRGLDADINFVVDDYRHDIDKMKNLNKVEFVQTLRRESASFGRGSSKYKGLALQK 222

Query:   273 CGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCN 312
             C        QF  K +  + LF +     R +D AAIK N
Sbjct:   223 CT-------QF--KTHDQIHLFQN-----RGWDAAAIKYN 248

GO:0003677 "DNA binding" evidence=IEA;ISS;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS;TAS

GO:0009658 "chloroplast organization" evidence=IMP

GO:0007275 "multicellular organismal development" evidence=ISS

TAIR|locus:2056048 SNZ "SCHNARCHZAPFEN" [Arabidopsis thaliana (taxid:3702)]

 Score = 346 (126.9 bits), Expect = 2.5e-40, Sum P(3) = 2.5e-40
 Identities = 65/117 (55%), Positives = 78/117 (66%)

Query:   150 RVTQQSSPVVKKXXXXXXXXXXQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTXXXXXX 209
             R  Q++  + KK           YRGVTFYRRTGRWESHIWDCGKQVYLGGFDT      
Sbjct:    86 RNKQETLVMKKKSRRGPRSRSSHYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAYTAAR 145

Query:   210 XXXXXXIKFRGVDADINFNLADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYR 266
                   I+FRG+ ADINF + DY+ D+++MKNL+KEEFV  LRR S   +RG SKY+
Sbjct:   146 AYDRAAIRFRGLQADINFIVDDYKQDIEKMKNLSKEEFVQSLRRASASLARGGSKYK 202

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IDA;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0005730 "nucleolus" evidence=IDA

GO:0007275 "multicellular organismal development" evidence=ISS

TAIR|locus:2091891 PLT1 "PLETHORA 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 414 (150.8 bits), Expect = 9.9e-39, P = 9.9e-39
 Identities = 87/200 (43%), Positives = 124/200 (62%)

Query:   146 GGEVRVTQQSSPVVKKXXXXXXXXXXQYRGVTFYRRTGRWESHIWD--C--------GKQ 195
             GG + V + ++P  ++           YRGVT +R TGR+E+H+WD  C        G+Q
Sbjct:   157 GGALAVVETATP--RRALDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQ 214

Query:   196 VYLGGFDTXXXXXXXXXXXXIKFRGVDADINFNLADYEDDMKQMKNLTKEEFVHILRRQS 255
             VYLGG+D             +K+ G     NF + +YE ++++MK++T++EFV  +RR+S
Sbjct:   215 VYLGGYDKEDKAARSYDLAALKYWGPSTTTNFPITNYEKEVEEMKHMTRQEFVAAIRRKS 274

Query:   256 TGFSRGSSKYRGVTLH-KCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGR 314
             +GFSRG+S YRGVT H + GRW+AR+G+  G K +YLG F +E EAA AYD AAIK  G 
Sbjct:   275 SGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGL 334

Query:   315 EAVTNFEPSTYEGEMITEGS 334
              AVTNFE + Y+ + I E S
Sbjct:   335 NAVTNFEINRYDVKAILESS 354

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0007389 "pattern specification process" evidence=IMP

GO:0019827 "stem cell maintenance" evidence=IMP

GO:0048364 "root development" evidence=IGI;IMP

GO:0051302 "regulation of cell division" evidence=IMP

TAIR|locus:2173009 AIL5 "AINTEGUMENTA-like 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 409 (149.0 bits), Expect = 3.4e-38, P = 3.4e-38
 Identities = 85/188 (45%), Positives = 119/188 (63%)

Query:   154 QSSPVVKKXXXXXXXXXXQYRGVTFYRRTGRWESHIWD--C--------GKQVYLGGFDT 203
             ++SP  KK           YRGVT +R TGR+E+H+WD  C        G+QVYLGG+D 
Sbjct:   185 EASPTPKKNVESFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDK 244

Query:   204 XXXXXXXXXXXXIKFRGVDADINFNLADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGSS 263
                         +K+ G     NF +++YE ++++MK++T++EFV  LRR+S+GFSRG+S
Sbjct:   245 EDKAARAYDLAALKYWGPTTTTNFPISNYESELEEMKHMTRQEFVASLRRKSSGFSRGAS 304

Query:   264 KYRGVTLH-KCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEP 322
              YRGVT H + GRW+AR+G+  G K +YLG F ++ EAA AYD AAIK  G  AVTNF+ 
Sbjct:   305 MYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDI 364

Query:   323 STYEGEMI 330
             S Y+ + I
Sbjct:   365 SRYDVKSI 372

GO:0003677 "DNA binding" evidence=IEA;ISS;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS;TAS

GO:0009791 "post-embryonic development" evidence=IMP

GO:0009845 "seed germination" evidence=RCA;IMP

GO:0040019 "positive regulation of embryonic development" evidence=IMP

GO:0048364 "root development" evidence=IMP

GO:0060771 "phyllotactic patterning" evidence=IGI

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009933 "meristem structural organization" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010182 "sugar mediated signaling pathway" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0019915 "lipid storage" evidence=RCA

GO:0050826 "response to freezing" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=ISS;IMP

TAIR|locus:2008216 PLT2 "PLETHORA 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
 Identities = 83/173 (47%), Positives = 114/173 (65%)

Query:   173 YRGVTFYRRTGRWESHIWD--C--------GKQVYLGGFDTXXXXXXXXXXXXIKFRGVD 222
             YRGVT +R TGR+E+H+WD  C        G+QVYLGG+D             +K+ G  
Sbjct:   191 YRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWGPS 250

Query:   223 ADINFNLADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLH-KCGRWEARMG 281
                NF + +YE ++++MKN+T++EFV  +RR+S+GFSRG+S YRGVT H + GRW+AR+G
Sbjct:   251 TTTNFPITNYEKEVEEMKNMTRQEFVASIRRKSSGFSRGASMYRGVTRHHQHGRWQARIG 310

Query:   282 QFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEGEMITEGS 334
             +  G K +YLG F +E EAA AYD AAIK  G  AVTNFE + Y+ + I E +
Sbjct:   311 RVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFEINRYDVKAILESN 363

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;NAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0007389 "pattern specification process" evidence=IMP

GO:0019827 "stem cell maintenance" evidence=IMP

GO:0048364 "root development" evidence=IGI;IMP

GO:0051302 "regulation of cell division" evidence=IMP

TAIR|locus:2030265 AT1G72570 [Arabidopsis thaliana (taxid:3702)]

 Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
 Identities = 84/193 (43%), Positives = 118/193 (61%)

Query:   153 QQSSPVVKKXXXXXXXXXXQYRGVTFYRRTGRWESHIWD--C--------GKQVYLGGFD 202
             Q    V +K          QYRGVT +R TGR+E+H+WD  C        G+QVYLGG+D
Sbjct:   204 QVKESVPRKSVDSYGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRRGRQVYLGGYD 263

Query:   203 TXXXXXXXXXXXXIKFRGVDADINFNLADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGS 262
                          +K+ G    +NF L++YE +++++ N+ ++EFV +LRR S+GFSRG+
Sbjct:   264 EEEKAARAYDLAALKYWGPTTHLNFPLSNYEKEIEELNNMNRQEFVAMLRRNSSGFSRGA 323

Query:   263 SKYRGVTLH-KCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFE 321
             S YRGVT H + GRW+AR+G+  G K +YLG F ++ EAA AYD AAIK  G  AVTNF+
Sbjct:   324 SVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFD 383

Query:   322 PSTYEGEMITEGS 334
              + Y+ + I   S
Sbjct:   384 INRYDVKRICSSS 396

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009686 "gibberellin biosynthetic process" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=ISS

TAIR|locus:2155680 AIL7 "AINTEGUMENTA-like 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
 Identities = 91/198 (45%), Positives = 121/198 (61%)

Query:   173 YRGVTFYRRTGRWESHIWD--C--------GKQVYLGGFDTXXXXXXXXXXXXIKFRGVD 222
             YRGVT +R TGR+E+H+WD  C        G+QVYLGG+D             +K+ G  
Sbjct:   232 YRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQVYLGGYDKEDRAARAYDLAALKYWGST 291

Query:   223 ADINFNLADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLH-KCGRWEARMG 281
             A  NF ++ Y  ++++M ++TK+EF+  LRR+S+GFSRG+S YRGVT H + GRW+AR+G
Sbjct:   292 ATTNFPVSSYSKELEEMNHMTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIG 351

Query:   282 QFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEGEMITEGSNE-GGD- 339
             +  G K +YLG F +E EAA AYD AAIK  G  AVTNFE + Y+ E +   S   GG  
Sbjct:   352 RVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGINAVTNFEMNRYDIEAVMNSSLPVGGAA 411

Query:   340 ---HNLDLNLGISSSFGS 354
                H L L L   SS  S
Sbjct:   412 AKRHKLKLALESPSSSSS 429

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0060771 "phyllotactic patterning" evidence=IGI

GO:0010492 "maintenance of shoot apical meristem identity" evidence=IGI

GO:0009887 "organ morphogenesis" evidence=ISS

TAIR|locus:2137559 ANT "AINTEGUMENTA" [Arabidopsis thaliana (taxid:3702)]

 Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
 Identities = 85/197 (43%), Positives = 119/197 (60%)

Query:   145 GGGEVRVTQQSSPVVKKXXXXXXXXXXQYRGVTFYRRTGRWESHIWDC----------GK 194
             G  +V V  Q   V +K          QYRGVT +R TGR+E+H+WD           G+
Sbjct:   256 GQEDVVVVGQKQIVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSFKKEGHSRKGR 315

Query:   195 QVYLGGFDTXXXXXXXXXXXXIKFRGVDADINFNLADYEDDMKQMKNLTKEEFVHILRRQ 254
             QVYLGG+D             +K+ G     NF+  +Y+ +++ MKN+T++E+V  LRR+
Sbjct:   316 QVYLGGYDMEEKAARAYDLAALKYWGPSTHTNFSAENYQKEIEDMKNMTRQEYVAHLRRK 375

Query:   255 STGFSRGSSKYRGVTLH-KCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNG 313
             S+GFSRG+S YRGVT H + GRW+AR+G+  G K +YLG F ++ EAA AYD AAIK  G
Sbjct:   376 SSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFGTQEEAAEAYDVAAIKFRG 435

Query:   314 REAVTNFEPSTYEGEMI 330
               AVTNF+ + Y+ + I
Sbjct:   436 TNAVTNFDITRYDVDRI 452

GO:0003677 "DNA binding" evidence=IEA;ISS;IDA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS;TAS

GO:0042127 "regulation of cell proliferation" evidence=RCA;IMP

GO:0010492 "maintenance of shoot apical meristem identity" evidence=IGI

GO:0006306 "DNA methylation" evidence=RCA

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=IMP;RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010051 "xylem and phloem pattern formation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010089 "xylem development" evidence=RCA

GO:0016246 "RNA interference" evidence=RCA

GO:0031047 "gene silencing by RNA" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

GO:0048519 "negative regulation of biological process" evidence=RCA

GO:0007276 "gamete generation" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SK03	RAP27_ARATH	No assigned EC number	0.5311	0.7960	0.9042	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	510
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	6e-27
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	9e-25
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	5e-24
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	1e-22
pfam00847	53	pfam00847, AP2, AP2 domain	6e-11
pfam00847	53	pfam00847, AP2, AP2 domain	7e-09

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score =  102 bits (257), Expect = 6e-27
 Identities = 30/64 (46%), Positives = 37/64 (57%)

Query: 264 KYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPS 323
           KYRGV     G+W A +      K ++LG FD+  EAARAYD+AA K  GR A  NF  S
Sbjct: 1   KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNS 60

Query: 324 TYEG 327
            Y+ 
Sbjct: 61  LYDS 64

Length = 64

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score = 96.6 bits (241), Expect = 9e-25
 Identities = 35/64 (54%), Positives = 43/64 (67%), Gaps = 3/64 (4%)

Query: 172 QYRGVTFYRRTGRWESHIWD--CGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNL 229
           +YRGV   R  G+W + I D   GK+V+LG FDTA  AARAYDRAA KFRG  A +NF  
Sbjct: 1   KYRGVRQ-RPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPN 59

Query: 230 ADYE 233
           + Y+
Sbjct: 60  SLYD 63

Length = 64

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score = 94.6 bits (236), Expect = 5e-24
 Identities = 31/61 (50%), Positives = 38/61 (62%)

Query: 263 SKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEP 322
           SKYRGV     G+W A +    G + I+LG FD+  EAARAYD+AA+K  G  AV NF  
Sbjct: 1   SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPD 60

Query: 323 S 323
           S
Sbjct: 61  S 61

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score = 90.8 bits (226), Expect = 1e-22
 Identities = 32/59 (54%), Positives = 41/59 (69%), Gaps = 3/59 (5%)

Query: 171 SQYRGVTFYRRTGRWESHIWDC--GKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINF 227
           S+YRGV   R  G+W + I D   G++++LG FDTA  AARAYDRAA+K RG  A +NF
Sbjct: 1   SKYRGVRQ-RPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNF 58

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

>gnl|CDD|216148 pfam00847, AP2, AP2 domain

 Score = 57.3 bits (139), Expect = 6e-11
 Identities = 24/54 (44%), Positives = 30/54 (55%), Gaps = 5/54 (9%)

Query: 171 SQYRGVTFYRRTGRWESHIWDCG----KQVYLGGFDTAHAAARAYDRAAIKFRG 220
           S Y+GV + +R GRW + I D G    K+  LG F T   AARA   A +K RG
Sbjct: 1   SGYKGVRYDKRWGRWVAEIRDPGEKKKKRFSLGTFGTEE-AARAAIAARLKLRG 53

This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins. Length = 53

>gnl|CDD|216148 pfam00847, AP2, AP2 domain

 Score = 51.5 bits (124), Expect = 7e-09
 Identities = 24/54 (44%), Positives = 27/54 (50%), Gaps = 4/54 (7%)

Query: 263 SKYRGVTLHKC-GRWEA--RMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNG 313
           S Y+GV   K  GRW A  R      KK   LG F +E EAARA   A +K  G
Sbjct: 1   SGYKGVRYDKRWGRWVAEIRDPGEKKKKRFSLGTFGTE-EAARAAIAARLKLRG 53

This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	510
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.71
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	99.71
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	99.7
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.7
PHA00280	121	putative NHN endonuclease	99.66
PHA00280	121	putative NHN endonuclease	99.46
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	99.09
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	98.86
cd04518	174	TBP_archaea archaeal TATA box binding protein (TBP	83.02
cd00652	174	TBP_TLF TATA box binding protein (TBP): Present in	82.01

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.71  E-value=1.1e-17  Score=132.32  Aligned_cols=59  Identities=53%  Similarity=0.852  Sum_probs=55.3

Q ss_pred             CCeEEeeEecCCCcEEEEEeeC--CEEEEecCCCCHHHHHHHHHHHHHHhcCCCCccccccc
Q 010454          171 SQYRGVTFYRRTGRWESHIWDC--GKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLA  230 (510)
Q Consensus       171 SgyrGV~~~r~~gKW~A~I~~~--gK~i~LGtFdT~EeAArAYD~Aa~~l~G~~A~~NFp~~  230 (510)
                      |+|+||++++ +|||+|+|+++  +|++|||+|+|+||||+|||.|+++++|..+.+|||.+
T Consensus         1 s~~~GV~~~~-~gkw~A~I~~~~~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~   61 (61)
T cd00018           1 SKYRGVRQRP-WGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS   61 (61)
T ss_pred             CCccCEEECC-CCcEEEEEEeCCCCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence            6899999755 59999999999  99999999999999999999999999999999999863

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=99.71  E-value=1.9e-17  Score=132.56  Aligned_cols=63  Identities=48%  Similarity=0.748  Sum_probs=59.5

Q ss_pred             cccceeeeeCCeEEEEEccccCceeeecCCCCCHHHHHHHHHHHHHHhcCCCccCCCCCCCcc
Q 010454          264 KYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYE  326 (510)
Q Consensus       264 ~yrGV~~~k~gKW~ArI~~~~~gk~i~LGtFdTeEEAArAYD~Aaikl~G~~A~tNF~~s~Y~  326 (510)
                      +|+||+++++|||+|+|+...+++.++||+|+|+||||+|||.|+++|+|..+.+||+.++|+
T Consensus         1 ~~kGV~~~~~gkw~A~I~~~~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y~   63 (64)
T smart00380        1 KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYD   63 (64)
T ss_pred             CEeeEEeCCCCeEEEEEEecCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccCC
Confidence            589999888899999998656999999999999999999999999999999999999999996

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=99.70  E-value=3.1e-17  Score=131.38  Aligned_cols=61  Identities=57%  Similarity=0.920  Sum_probs=58.0

Q ss_pred             CeEEeeEecCCCcEEEEEee--CCEEEEecCCCCHHHHHHHHHHHHHHhcCCCCccccccccch
Q 010454          172 QYRGVTFYRRTGRWESHIWD--CGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLADYE  233 (510)
Q Consensus       172 gyrGV~~~r~~gKW~A~I~~--~gK~i~LGtFdT~EeAArAYD~Aa~~l~G~~A~~NFp~~~ye  233 (510)
                      +|+||++ +++|||+|+|++  .+|+++||+|+|+||||+|||.|+++++|..+.+|||.++|+
T Consensus         1 ~~kGV~~-~~~gkw~A~I~~~~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y~   63 (64)
T smart00380        1 KYRGVRQ-RPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYD   63 (64)
T ss_pred             CEeeEEe-CCCCeEEEEEEecCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccCC
Confidence            5899996 667999999999  899999999999999999999999999999999999999986

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.70  E-value=3.3e-17  Score=129.72  Aligned_cols=61  Identities=51%  Similarity=0.788  Sum_probs=56.1

Q ss_pred             ccccceeeeeCCeEEEEEccccCceeeecCCCCCHHHHHHHHHHHHHHhcCCCccCCCCCC
Q 010454          263 SKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPS  323 (510)
Q Consensus       263 S~yrGV~~~k~gKW~ArI~~~~~gk~i~LGtFdTeEEAArAYD~Aaikl~G~~A~tNF~~s  323 (510)
                      |+|+||+++++|||+|+|+....+|+++||+|+|+||||+|||+|+++|+|..+.+|||.+
T Consensus         1 s~~~GV~~~~~gkw~A~I~~~~~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~   61 (61)
T cd00018           1 SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS   61 (61)
T ss_pred             CCccCEEECCCCcEEEEEEeCCCCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence            6899999988999999997433499999999999999999999999999999999999864

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>PHA00280 putative NHN endonuclease

Probab=99.66  E-value=1e-16  Score=144.05  Aligned_cols=75  Identities=19%  Similarity=0.291  Sum_probs=69.4

Q ss_pred             CcccccccCCcccccCCCCCCCCCCCeEEeeEecCCCcEEEEEeeCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCCc
Q 010454          147 GEVRVTQQSSPVVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDAD  224 (510)
Q Consensus       147 ~~LR~at~~~n~~nr~r~~~r~~tSgyrGV~~~r~~gKW~A~I~~~gK~i~LGtFdT~EeAArAYD~Aa~~l~G~~A~  224 (510)
                      .|||++|+++|+.|++  .+++++|||+||+|+++.+||+|+|+++||+++||+|+++|+|+.||+ ++.+|+|++|+
T Consensus        45 ~NLr~~T~~eN~~N~~--~~~~N~SG~kGV~~~k~~~kw~A~I~~~gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~  119 (121)
T PHA00280         45 DNLRLALPKENSWNMK--TPKSNTSGLKGLSWSKEREMWRGTVTAEGKQHNFRSRDLLEVVAWIYR-TRRELHGQFAR  119 (121)
T ss_pred             HHhhhcCHHHHhcccC--CCCCCCCCCCeeEEecCCCeEEEEEEECCEEEEcCCCCCHHHHHHHHH-HHHHHhhcccc
Confidence            6899999999988876  577889999999999999999999999999999999999999999997 77889998874

>PHA00280 putative NHN endonuclease

Probab=99.46  E-value=1.9e-13  Score=123.05  Aligned_cols=104  Identities=15%  Similarity=0.114  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHHhcCCCCc---ccc-ccccchhhhhhhhccchhhhhhhhhcccCCccCCcccccceeeee-CCeEEEEEc
Q 010454          207 AARAYDRAAIKFRGVDAD---INF-NLADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHK-CGRWEARMG  281 (510)
Q Consensus       207 AArAYD~Aa~~l~G~~A~---~NF-p~~~yeeELkqLr~lSKEE~V~~LRRqS~g~sr~sS~yrGV~~~k-~gKW~ArI~  281 (510)
                      +-+++..+...++|.--.   +.+ .....+..+.+|+.++..|+..+.+..    +.++|+|+||+|++ .|||+|+|.
T Consensus        11 ~~~~Hrlvw~~~~G~~P~g~~VdHidg~~~dnri~NLr~~T~~eN~~N~~~~----~~N~SG~kGV~~~k~~~kw~A~I~   86 (121)
T PHA00280         11 APRRHIQVWEAANGPIPKGYYIDHIDGNPLNDALDNLRLALPKENSWNMKTP----KSNTSGLKGLSWSKEREMWRGTVT   86 (121)
T ss_pred             hhhHhHhhhHHHHCCCCCCCEEEcCCCCCCCCcHHHhhhcCHHHHhcccCCC----CCCCCCCCeeEEecCCCeEEEEEE
Confidence            445677777788885321   111 112344678999999999998887654    37789999999996 899999996


Q ss_pred             cccCceeeecCCCCCHHHHHHHHHHHHHHhcCCCcc
Q 010454          282 QFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAV  317 (510)
Q Consensus       282 ~~~~gk~i~LGtFdTeEEAArAYD~Aaikl~G~~A~  317 (510)
                        ++||.++||+|+++|+|+.||+ ++++|||.+|.
T Consensus        87 --~~gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~  119 (121)
T PHA00280         87 --AEGKQHNFRSRDLLEVVAWIYR-TRRELHGQFAR  119 (121)
T ss_pred             --ECCEEEEcCCCCCHHHHHHHHH-HHHHHhhcccc
Confidence              9999999999999999999997 78899998774

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=99.09  E-value=1.5e-10  Score=89.68  Aligned_cols=51  Identities=33%  Similarity=0.549  Sum_probs=47.0

Q ss_pred             CCeEEeeEecCCCcEEEEEeeC-----CEEEEecCCCCHHHHHHHHHHHHHHhcCC
Q 010454          171 SQYRGVTFYRRTGRWESHIWDC-----GKQVYLGGFDTAHAAARAYDRAAIKFRGV  221 (510)
Q Consensus       171 SgyrGV~~~r~~gKW~A~I~~~-----gK~i~LGtFdT~EeAArAYD~Aa~~l~G~  221 (510)
                      |+|+||+|++..++|+|+|++.     +|.++||.|+++|||++||++++++++|+
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e   56 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE   56 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred             CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence            6899999999999999999983     48999999999999999999999999874

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=98.86  E-value=5.6e-09  Score=80.85  Aligned_cols=51  Identities=37%  Similarity=0.561  Sum_probs=45.4

Q ss_pred             ccccceeeee-CCeEEEEEcccc-C--ceeeecCCCCCHHHHHHHHHHHHHHhcC
Q 010454          263 SKYRGVTLHK-CGRWEARMGQFL-G--KKYIYLGLFDSEVEAARAYDKAAIKCNG  313 (510)
Q Consensus       263 S~yrGV~~~k-~gKW~ArI~~~~-~--gk~i~LGtFdTeEEAArAYD~Aaikl~G  313 (510)
                      |+|+||++++ .++|+|+|+... +  +|.++||.|++++||++||+.++++++|
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~   55 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEG   55 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS
T ss_pred             CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcC
Confidence            6899999997 899999997532 1  4999999999999999999999999987

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription

Probab=83.02  E-value=27  Score=33.69  Aligned_cols=136  Identities=15%  Similarity=0.218  Sum_probs=83.5

Q ss_pred             CCCCeEEeeEecCCCcEEEEEeeCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCCc----cccccccchhhhhhhhccch
Q 010454          169 RSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDAD----INFNLADYEDDMKQMKNLTK  244 (510)
Q Consensus       169 ~tSgyrGV~~~r~~gKW~A~I~~~gK~i~LGtFdT~EeAArAYD~Aa~~l~G~~A~----~NFp~~~yeeELkqLr~lSK  244 (510)
                      ...+|-||.++-+.-|=.+.|+..||-+--|. .++|+|..|-++.+..+......    .+|.+...-.....--.+..
T Consensus        32 ~P~~fpgli~Rl~~Pk~t~lIF~SGKiv~tGa-ks~~~a~~a~~~~~~~L~~~g~~~~~~~~~~i~NIVas~~l~~~i~L  110 (174)
T cd04518          32 NPDQFPGLVYRLEDPKIAALIFRSGKMVCTGA-KSVEDLHRAVKEIIKKLKDYGIKVIEKPEIKVQNIVASADLGREVNL  110 (174)
T ss_pred             CCCcCcEEEEEccCCcEEEEEECCCeEEEEcc-CCHHHHHHHHHHHHHHHHhcCCCccCCCceEEEEEEEEEEcCCccCH
Confidence            34689999987777788999999999876664 68889999988888776542211    12221110000000011222


Q ss_pred             hhhhhhhhcccCCccCCcccccceeeee-CCeEEEEEccccCceeeecCCCCCHHHHHHHHHHHHHHhc
Q 010454          245 EEFVHILRRQSTGFSRGSSKYRGVTLHK-CGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCN  312 (510)
Q Consensus       245 EE~V~~LRRqS~g~sr~sS~yrGV~~~k-~gKW~ArI~~~~~gk~i~LGtFdTeEEAArAYD~Aaikl~  312 (510)
                      +.+...++.-    .=...+|-|+.++- .-|=.+.|  +..||-+..|. .++||+.+|.++-...|.
T Consensus       111 ~~la~~~~~~----~YePe~fpglvyR~~~pk~~~lI--F~SGKvvitGa-ks~~~~~~a~~~i~~~l~  172 (174)
T cd04518         111 DAIAIGLPNA----EYEPEQFPGLVYRLDEPKVVLLL--FSSGKMVITGA-KSEEDAKRAVEKLLSRLK  172 (174)
T ss_pred             HHHHhhCCCC----ccCcccCceEEEEecCCcEEEEE--eCCCEEEEEec-CCHHHHHHHHHHHHHHHh
Confidence            3333333311    12346789988774 44555666  67888777775 678999999888776653

TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.

>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription

Probab=82.01  E-value=30  Score=33.30  Aligned_cols=135  Identities=16%  Similarity=0.152  Sum_probs=81.3

Q ss_pred             CCCeEEeeEecCCCcEEEEEeeCCEEEEecCCCCHHHHHHHHHHHHHHhcCC--CC--ccccccccchhhhhhhhccchh
Q 010454          170 SSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGV--DA--DINFNLADYEDDMKQMKNLTKE  245 (510)
Q Consensus       170 tSgyrGV~~~r~~gKW~A~I~~~gK~i~LGtFdT~EeAArAYD~Aa~~l~G~--~A--~~NFp~~~yeeELkqLr~lSKE  245 (510)
                      ..+|-||.++.+.-+=.+.|+..||-+--|. .++|+|.+|.++.+..+.-.  ..  ..||-+...-.....--.+..+
T Consensus        33 Pe~fpgli~R~~~P~~t~lIf~sGKivitGa-ks~~~~~~a~~~~~~~L~~~g~~~~~~~~~~v~NIvas~~l~~~i~L~  111 (174)
T cd00652          33 PKRFPGVIMRLREPKTTALIFSSGKMVITGA-KSEEDAKLAARKYARILQKLGFPVEKFPEFKVQNIVASCDLGFPIRLE  111 (174)
T ss_pred             CCccceEEEEcCCCcEEEEEECCCEEEEEec-CCHHHHHHHHHHHHHHHHHcCCCccccCceEEEEEEEEEECCCcccHH
Confidence            3688999987777888999999999887775 47788888888887776332  11  1233221111000000112223


Q ss_pred             hhhhhhhcccCCccCCcccccceeeee-CCeEEEEEccccCceeeecCCCCCHHHHHHHHHHHHHHh
Q 010454          246 EFVHILRRQSTGFSRGSSKYRGVTLHK-CGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKC  311 (510)
Q Consensus       246 E~V~~LRRqS~g~sr~sS~yrGV~~~k-~gKW~ArI~~~~~gk~i~LGtFdTeEEAArAYD~Aaikl  311 (510)
                      ++....+...   .=.-..|-|+.++- .-+=.+.|  +..||-+..|. .+++|+.+|+++-...|
T Consensus       112 ~la~~~~~~~---~YePe~fpgli~r~~~pk~t~lI--F~sGkvvitGa-ks~~~~~~a~~~i~~~L  172 (174)
T cd00652         112 ELALKHPENA---SYEPELFPGLIYRMDEPKVVLLI--FVSGKIVITGA-KSREDIYEAVEKIYPIL  172 (174)
T ss_pred             HHHhhhhccc---EECCccCceEEEEecCCcEEEEE--EcCCEEEEEec-CCHHHHHHHHHHHHHHH
Confidence            3333332111   11235689988874 34555556  67888777776 67889999987765544

TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. New members of the TBP family, called TBP-like proteins (TBLP, TLF, TLP) or TBP-related factors (TRF1, TRF2,TRP), are similar to the core domain of TBPs, with identical or chemically similar amino acids at many

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	510
1gcc_A	63	Ethylene responsive element binding factor 1; tran	4e-15
1gcc_A	63	Ethylene responsive element binding factor 1; tran	3e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-07

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63

 Score = 68.9 bits (169), Expect = 4e-15
 Identities = 28/60 (46%), Positives = 37/60 (61%), Gaps = 6/60 (10%)

Query: 172 QYRGVTFYRRT-GRWESHIWD---CGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINF 227
            YRGV   +R  G++ + I D    G +V+LG F+TA  AA AYDRAA + RG  A +NF
Sbjct: 2   HYRGVR--QRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 59

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63

 Score = 55.0 bits (133), Expect = 3e-10
 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 3/59 (5%)

Query: 264 KYRGVTLHKCGRW--EARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNF 320
            YRGV     G++  E R     G + ++LG F++  +AA AYD+AA +  G  A+ NF
Sbjct: 2   HYRGVRQRPWGKFAAEIRDPAKNGAR-VWLGTFETAEDAALAYDRAAFRMRGSRALLNF 59

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.8 bits (123), Expect = 5e-07
 Identities = 53/338 (15%), Positives = 100/338 (29%), Gaps = 76/338 (22%)

Query: 71  FTFNFDILKVGGDSGNV-RNENVE----QNNAASRKEFAFFPASGGGENGGGQSSGSWID 125
           F  NFD   V     ++   E ++      +A S     F+      E    +     + 
Sbjct: 29  FVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLR 88

Query: 126 LSFD--KQQQQYQNQQPQQQEGG--GEVRVTQQSSPVVKK---SRRGP----RS-----R 169
           +++       + + +QP         +       + V  K   SR  P    R      R
Sbjct: 89  INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR 148

Query: 170 SSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINF-- 227
            ++   V      G         GK   +     A     +Y         +     F  
Sbjct: 149 PAKN--VLIDGVLG--------SGKTW-V-----ALDVCLSYKVQCKMDFKI-----FWL 187

Query: 228 NLADY---EDDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFL 284
           NL +    E  ++ ++ L     ++ +    T  S  SS  +     +    +A + + L
Sbjct: 188 NLKNCNSPETVLEMLQKL-----LYQIDPNWTSRSDHSSNIK----LRIHSIQAELRRLL 238

Query: 285 -GKKYI--YLGLFD-SEVEAARAYDKAAIKCN----GREA-VTNFEPSTYEGEMITEGSN 335
             K Y    L L +    +A  A++   + C      R   VT+F  +     +  +  +
Sbjct: 239 KSKPYENCLLVLLNVQNAKAWNAFN---LSCKILLTTRFKQVTDFLSAATTTHISLDHHS 295

Query: 336 EG--GDHNLDL---NLGISSSFGSGPK-ANEGHSQFLS 367
                D    L    L         P+     + + LS
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQ--DLPREVLTTNPRRLS 331

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	510
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.79
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.78
1u3e_M	174	HNH homing endonuclease; HNH catalytic motif, heli	95.61
3igm_B	77	PF14_0633 protein; AP2 domain, specific transcript	93.86
1u3e_M	174	HNH homing endonuclease; HNH catalytic motif, heli	90.94

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.79  E-value=9e-20  Score=145.35  Aligned_cols=60  Identities=33%  Similarity=0.582  Sum_probs=55.9

Q ss_pred             cccceeeeeCCeEEEEEcccc-CceeeecCCCCCHHHHHHHHHHHHHHhcCCCccCCCCCC
Q 010454          264 KYRGVTLHKCGRWEARMGQFL-GKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPS  323 (510)
Q Consensus       264 ~yrGV~~~k~gKW~ArI~~~~-~gk~i~LGtFdTeEEAArAYD~Aaikl~G~~A~tNF~~s  323 (510)
                      +|+||+++++|||+|+|+.+. +|+++|||+|+|+||||+|||.|+++|+|..+.+|||.+
T Consensus         2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~   62 (63)
T 1gcc_A            2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence            699999988999999998655 479999999999999999999999999999999999875

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.78  E-value=7.3e-20  Score=145.88  Aligned_cols=58  Identities=50%  Similarity=0.788  Sum_probs=54.1

Q ss_pred             CeEEeeEecCCCcEEEEEee---CCEEEEecCCCCHHHHHHHHHHHHHHhcCCCCccccccc
Q 010454          172 QYRGVTFYRRTGRWESHIWD---CGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLA  230 (510)
Q Consensus       172 gyrGV~~~r~~gKW~A~I~~---~gK~i~LGtFdT~EeAArAYD~Aa~~l~G~~A~~NFp~~  230 (510)
                      +||||++ +++|||+|+|++   +++++|||+|+|+||||+|||.|+++++|..+.+|||.+
T Consensus         2 ~yrGV~~-r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~   62 (63)
T 1gcc_A            2 HYRGVRQ-RPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEE-ETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcccEee-CCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence            6999996 579999999999   478999999999999999999999999999999999864

>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1

Probab=95.61  E-value=0.00013  Score=67.57  Aligned_cols=60  Identities=12%  Similarity=0.075  Sum_probs=47.3

Q ss_pred             CcccccccCCcccccCCCCCCCCCCCeEEeeEecCCCcEEEEEeeCCEEEEecCCCCHHHHHHHH
Q 010454          147 GEVRVTQQSSPVVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAY  211 (510)
Q Consensus       147 ~~LR~at~~~n~~nr~r~~~r~~tSgyrGV~~~r~~gKW~A~I~~~gK~i~LGtFdT~EeAArAY  211 (510)
                      .|||++|+++|+.++.+....   ...+||.+ +..++|.+.|..+ +.++||.|+|.+|||++|
T Consensus        86 ~NL~~~t~~eN~~~~~~~~~~---~~~~g~~~-~~~~k~~~vi~~~-~~~~~~~f~s~~eAa~~~  145 (174)
T 1u3e_M           86 TNLRWVTQKINVENQMSRGTL---NVSKAQQI-AKIKNQKPIIVIS-PDGIEKEYPSTKCACEEL  145 (174)
T ss_dssp             GGEEEECHHHHHHHHHHHTCC---CCHHHHHH-HHHHTCCCEEEEC-TTSCEEEESCHHHHHHHH
T ss_pred             HHcEECCHHHHhhcccccCcc---cceeeeee-ccCCCCceEEEEc-CCceEEeeCCHHHHHHHH
Confidence            689999999998776543322   12468876 6677899999988 778899999999999986

>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}

Probab=93.86  E-value=0.027  Score=46.21  Aligned_cols=29  Identities=28%  Similarity=0.536  Sum_probs=25.6

Q ss_pred             CCCCCeEEeeEecCCCcEEEEEeeCCEEE
Q 010454          168 SRSSQYRGVTFYRRTGRWESHIWDCGKQV  196 (510)
Q Consensus       168 ~~tSgyrGV~~~r~~gKW~A~I~~~gK~i  196 (510)
                      ..+|+|.||+|+++.+.|.|.-..+|++.
T Consensus         3 ~~~Sg~pGVsw~kR~~~WlA~W~e~g~rr   31 (77)
T 3igm_B            3 HMSSGYPGVSWNKRMCAWLAFFYDGASRR   31 (77)
T ss_dssp             -CCSSSTTEEEETTTTEEEEEEEETTEEE
T ss_pred             CCCCCCCcEEeecCCceEEEEEecCCeEe
Confidence            35799999999999999999999998864

>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1

Probab=90.94  E-value=0.018  Score=53.18  Aligned_cols=88  Identities=10%  Similarity=-0.027  Sum_probs=57.7

Q ss_pred             HHHHHHHHhcCCCCc---cccc-cccchhhhhhhhccchhhhhhhhhcccCCccCCcccccceeeeeCCeEEEEEccccC
Q 010454          210 AYDRAAIKFRGVDAD---INFN-LADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLG  285 (510)
Q Consensus       210 AYD~Aa~~l~G~~A~---~NFp-~~~yeeELkqLr~lSKEE~V~~LRRqS~g~sr~sS~yrGV~~~k~gKW~ArI~~~~~  285 (510)
                      ++...+..+.|..-.   .++- ....+..+.+|+-+|..|+.....+...    . ..++||.+.+.++|.+.|.  ..
T Consensus        55 vHrlVa~~f~~~~~~~~~v~H~dg~k~nn~~~NL~~~t~~eN~~~~~~~~~----~-~~~~g~~~~~~~k~~~vi~--~~  127 (174)
T 1u3e_M           55 VHRLVAIHFCEGYEEGLVVDHKDGNKDNNLSTNLRWVTQKINVENQMSRGT----L-NVSKAQQIAKIKNQKPIIV--IS  127 (174)
T ss_dssp             HHHHHHHHHCTTCCTTCEEEETTSCTTCCCGGGEEEECHHHHHHHHHHHTC----C-CCHHHHHHHHHHTCCCEEE--EC
T ss_pred             eHHHHHHHhcCCCCCCCEEEcCCCCCCCCCHHHcEECCHHHHhhcccccCc----c-cceeeeeeccCCCCceEEE--Ec
Confidence            666667777775321   1221 1123457889999999998876554431    1 1246776633567889985  44


Q ss_pred             ceeeecCCCCCHHHHHHHHH
Q 010454          286 KKYIYLGLFDSEVEAARAYD  305 (510)
Q Consensus       286 gk~i~LGtFdTeEEAArAYD  305 (510)
                       +..+||.|+|.+|||++|.
T Consensus       128 -~~~~~~~f~s~~eAa~~~G  146 (174)
T 1u3e_M          128 -PDGIEKEYPSTKCACEELG  146 (174)
T ss_dssp             -TTSCEEEESCHHHHHHHHT
T ss_pred             -CCceEEeeCCHHHHHHHHC
Confidence             6778999999999999963

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	510
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	4e-21
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	1e-20

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 84.8 bits (210), Expect = 4e-21
 Identities = 28/59 (47%), Positives = 36/59 (61%), Gaps = 4/59 (6%)

Query: 172 QYRGVTFYRRTGRWESHIWD---CGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINF 227
            YRGV   R  G++ + I D    G +V+LG F+TA  AA AYDRAA + RG  A +NF
Sbjct: 2   HYRGVR-QRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 59

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 83.2 bits (206), Expect = 1e-20
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%)

Query: 264 KYRGVTLHKCGRWEARMGQFLGK-KYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNF 320
            YRGV     G++ A +         ++LG F++  +AA AYD+AA +  G  A+ NF
Sbjct: 2   HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 59

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	510
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.81
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.79

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.81  E-value=9.6e-21  Score=149.22  Aligned_cols=60  Identities=33%  Similarity=0.577  Sum_probs=55.4

Q ss_pred             cccceeeeeCCeEEEEEccc-cCceeeecCCCCCHHHHHHHHHHHHHHhcCCCccCCCCCC
Q 010454          264 KYRGVTLHKCGRWEARMGQF-LGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPS  323 (510)
Q Consensus       264 ~yrGV~~~k~gKW~ArI~~~-~~gk~i~LGtFdTeEEAArAYD~Aaikl~G~~A~tNF~~s  323 (510)
                      .||||+++++|||+|+|+.+ .+++++|||+|+|+||||+|||+|+++|+|.++++|||+.
T Consensus         2 ~yrGVr~r~~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~~   62 (63)
T d1gcca_           2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcceEeECCCCCEEEEEecCCCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCcc
Confidence            59999998899999999754 4678999999999999999999999999999999999874

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.79  E-value=2.1e-20  Score=147.28  Aligned_cols=58  Identities=50%  Similarity=0.788  Sum_probs=53.3

Q ss_pred             CeEEeeEecCCCcEEEEEee---CCEEEEecCCCCHHHHHHHHHHHHHHhcCCCCccccccc
Q 010454          172 QYRGVTFYRRTGRWESHIWD---CGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLA  230 (510)
Q Consensus       172 gyrGV~~~r~~gKW~A~I~~---~gK~i~LGtFdT~EeAArAYD~Aa~~l~G~~A~~NFp~~  230 (510)
                      +||||++ +++|||+|+|++   +++++|||+|+|+||||+|||.|+++++|..+.+|||+.
T Consensus         2 ~yrGVr~-r~~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~~   62 (63)
T d1gcca_           2 HYRGVRQ-RPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEE-ETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcceEeE-CCCCCEEEEEecCCCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCcc
Confidence            5999996 568999999986   568999999999999999999999999999999999964