Citrus Sinensis ID: 010455

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510
Protein Sequence
MSETYTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGKNPWQYTFKKLM
Secondary Structure (PSIPRED)
ccccEEEEccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccEEEEEcccccccccEEEEHHHHHHHHHHHHHHHHHcccccccEEEEEccccHHHHHHHHHHHHccccEEEccccccHHHHHHHHHHccccEEEEccccHHHHHHcccccccccEEEEEEcccccHHHHHHHHcccEEEEHHHHHHcccccccccccccccEEEEEEcccccccccHHHHcHHHHHHHHHHHHHHHHHcccccccccEEEEEcHHHHHHHHHHHHHHHHcccEEEEccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccEEEEEEccccccHHHHHHHHHHHccccEEEccccccccccccccccccccccccccccccEEEEEEEccccccccccccccccEEEccccccccccccccccccccccccEEccccccEEcccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEcccccccccccccccEEEccccccccccccccccHHHHHHHHHHHHccccccccEEcccccccccEEEEcHHHHHHHHHHHHHHHHHcccccccEEEEEEcccHHHHHHHHHHHHccEEEEcccccccHHHHHHEEEcccEEEEEEcHHHHHHHHHHHccccccEEEEEEEccccHHHHHHHHHcccEEEEHHHHHHHccccccccccccccEEEEEEEcccccccccEEEccHHHHHHHHHHHHHHHHccccccHccEEEEHHHHHHHHHHHHHHHHHHcccEEEEccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccEEEEEEEccccccHHHHHHHHHHHccEEEEccccccccccEEEEccccccccccccccccccEEEEEEcccccccccccccccEEEEEcccEEEcccccHHHHHHHHHccccccccccEEEEEcccc
Coil and Loop (DISEMBL)
msetytvkveearpaadgkpsggpvyrciyakdgllespaglespwqffcdsakripnnqmlggrkvsdgkvgpyVWLTYQEVYDAAIRFGsamrsrgvnpgdrcgiygsncPEWIIAMEACNSqaityvplydtlgANAVEFIINHAEVSIAFVqenkipsilsclprcCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLqlgtldcelppkkktnistimytsgttgepkgvvlTNQAIVAEVLSVDQMFVVTGkvcseedtyfsflplahiYDQIIETHcihkgcsigfwrgDVRYLMEDIQElkptmfsgvprvydRIYTGIsnkissggaLSKKLFEFAYNYklgnmkkgmpqnkaapllDSLVFSKIREAFGGRLQAMlsgaaplpihVEEFlrvtsgapltqgygltescsgcfTSLADVFNmigtvgvpMTTVEARLesvpemgydalssvprgeiclrgntlfsgyykrpdlteevivdgwfhtgknpwQYTFKKLM
Flexible Loop (DISEMBL)
msetytvkveearpaadgkpsggpVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIpnnqmlggrkvsdgkvGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMytsgttgepkgVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQElkptmfsgvpRVYDRIYTGISnkissggalsKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGydalssvprgeicLRGNTLFSGYYKRPDLTEEVIVDgwfhtgknpwqytfkklm
Low Complexity Region (SEG)
MSETYTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGKNPWQYTFKKLM
Disordered region (IsUnstruct)
***********************PVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANV*********ELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKG****KAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGKNPWQYTF****
Disordered Region (DISOPRED)
***TYTV*****************VYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQ*************TNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGKNPWQYTFKKLM
Disordered Region (DISEMBL)
********VEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANV***********GVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGKNPWQYTFKKLM
Disordered Region (DISPRO)
**ETYTVKVEEA**********GPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGKNPWQYTFKK**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSETYTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGKNPWQYTFKKLM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	510	2.2.26 [Sep-21-2011]
Q9XIA9	665	Long chain acyl-CoA synth	yes	no	0.970	0.744	0.662	0.0
Q9C7W4	665	Long chain acyl-CoA synth	no	no	0.978	0.750	0.555	1e-168
Q9T0A0	666	Long chain acyl-CoA synth	no	no	0.984	0.753	0.549	1e-166
Q9T009	666	Long chain acyl-CoA synth	no	no	0.978	0.749	0.550	1e-165
O22898	660	Long chain acyl-CoA synth	no	no	0.972	0.751	0.478	1e-138
Q8LKS5	700	Long chain acyl-CoA synth	no	no	0.858	0.625	0.4	1e-85
Q8LPS1	701	Long chain acyl-CoA synth	no	no	0.841	0.611	0.416	4e-85
Q1ZXQ4	673	Fatty acyl-CoA synthetase	yes	no	0.921	0.698	0.344	5e-78
Q55DR6	667	Fatty acyl-CoA synthetase	no	no	0.837	0.640	0.370	9e-76
P41216	699	Long-chain-fatty-acid--Co	yes	no	0.827	0.603	0.354	4e-71

>sp|Q9XIA9|LACS2_ARATH Long chain acyl-CoA synthetase 2 OS=Arabidopsis thaliana GN=LACS2 PE=2 SV=1

 Score =  704 bits (1816), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/498 (66%), Positives = 395/498 (79%), Gaps = 3/498 (0%)

Query: 9   VEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVS 68
           VEE RPA    PS GPVYRC YAKDGLL+ P  ++SPWQFF ++ K+ PN QMLG R  +
Sbjct: 11  VEEGRPATAEHPSAGPVYRCKYAKDGLLDLPTDIDSPWQFFSEAVKKYPNEQMLGQRVTT 70

Query: 69  DGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAIT 128
           D KVGPY W+TY+E +DAAIR GSA+RSRGV+PG  CGIYG+NCPEWIIAMEAC SQ IT
Sbjct: 71  DSKVGPYTWITYKEAHDAAIRIGSAIRSRGVDPGHCCGIYGANCPEWIIAMEACMSQGIT 130

Query: 129 YVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQK 188
           YVPLYD+LG NAVEFIINHAEVS+ FVQE  + SILSC   C   LKTIVSF  VSS+QK
Sbjct: 131 YVPLYDSLGVNAVEFIINHAEVSLVFVQEKTVSSILSCQKGCSSNLKTIVSFGEVSSTQK 190

Query: 189 KEAEELGVSCFSWEEFLQLGTLD-CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVA 247
           +EA+   VS FSW EF  +G LD   LP K+KT+I TIMYTSGTTGEPKGV+L N AI  
Sbjct: 191 EEAKNQCVSLFSWNEFSLMGNLDEANLPRKRKTDICTIMYTSGTTGEPKGVILNNAAISV 250

Query: 248 EVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMED 307
           +VLS+D+M  VT + C   D +FS+LPLAH YDQ++E + + +G S+G+WRGD+RYLM+D
Sbjct: 251 QVLSIDKMLEVTDRSCDTSDVFFSYLPLAHCYDQVMEIYFLSRGSSVGYWRGDIRYLMDD 310

Query: 308 IQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAP 367
           +Q LKPT+F GVPRVYD++Y GI  KIS+ G + KKLF+FAYNYKLGNM+KG  Q +A+P
Sbjct: 311 VQALKPTVFCGVPRVYDKLYAGIMQKISASGLIRKKLFDFAYNYKLGNMRKGFSQEEASP 370

Query: 368 LLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTS 427
            LD L+F KI+EA GGR   +LSGAAPLP HVEEFLR+   + L+QGYGLTESC G FT+
Sbjct: 371 RLDRLMFDKIKEALGGRAHMLLSGAAPLPRHVEEFLRIIPASNLSQGYGLTESCGGSFTT 430

Query: 428 LADVFNMIGTVGVPMTTVEARLESVPEMGYDALSS-VPRGEICLRGNTLFSGYYKRPDLT 486
           LA VF+M+GTVGVPM TVEARL SVPEMGYDA S+ VPRGEICLRGN++FSGY+KR DLT
Sbjct: 431 LAGVFSMVGTVGVPMPTVEARLVSVPEMGYDAFSADVPRGEICLRGNSMFSGYHKRQDLT 490

Query: 487 EEVIVDGWFHTGK-NPWQ 503
           ++V++DGWFHTG    WQ
Sbjct: 491 DQVLIDGWFHTGDIGEWQ 508

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Acts in the cutin pathway. Preferentially uses palmitate, palmitoleate, oleate and linoleate. Required for repression of lateral root formation through its role in cutin biosynthesis and subsequent aerial tissues permeability.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: 3

>sp|Q9C7W4|LACS3_ARATH Long chain acyl-CoA synthetase 3 OS=Arabidopsis thaliana GN=LACS3 PE=2 SV=1

 Score =  593 bits (1529), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 279/502 (55%), Positives = 367/502 (73%), Gaps = 3/502 (0%)

Query: 5   YTVKVEEARPAADG-KPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLG 63
           Y V+VE+ +   DG  PS GPVYR IYAKDG  E P  L S W  F  S ++ PNN MLG
Sbjct: 6   YIVEVEKGKQGVDGGSPSVGPVYRSIYAKDGFPEPPDDLVSAWDIFRLSVEKSPNNPMLG 65

Query: 64  GRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACN 123
            R++ DGK G YVW TY+EV++  I+ G+++R+ GV  GD+CGIYG+N PEWII+MEACN
Sbjct: 66  RREIVDGKAGKYVWQTYKEVHNVVIKLGNSIRTIGVGKGDKCGIYGANSPEWIISMEACN 125

Query: 124 SQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANV 183
           +  +  VPLYDTLGA A+EFII HAEVS+AF +ENKI  +L   P+   YLK IVSF  V
Sbjct: 126 AHGLYCVPLYDTLGAGAIEFIICHAEVSLAFAEENKISELLKTAPKSTKYLKYIVSFGEV 185

Query: 184 SSSQKKEAEELGVSCFSWEEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTN 242
           +++Q+ EAE   ++ +SW++FL+LG     ELP K+++++ TIMYTSGTTG+PKGV+LTN
Sbjct: 186 TNNQRVEAERHRLTIYSWDQFLKLGEGKHYELPEKRRSDVCTIMYTSGTTGDPKGVLLTN 245

Query: 243 QAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVR 302
           ++I+  +  V ++     +  + +D Y S+LPLAHI+D++IE  CI++  SIGFWRGDV+
Sbjct: 246 ESIIHLLEGVKKLLKTIDEELTSKDVYLSYLPLAHIFDRVIEELCIYEAASIGFWRGDVK 305

Query: 303 YLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQ 362
            L+EDI  LKPT+F  VPRV +RIYTG+  K+S GG + KKLF FA+ YK  NM+KG P 
Sbjct: 306 ILIEDIAALKPTVFCAVPRVLERIYTGLQQKLSDGGFVKKKLFNFAFKYKHKNMEKGQPH 365

Query: 363 NKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCS 422
            +A+P+ D +VF K++E  GG ++ +LSGAAPL  H+E FLRV + A + QGYGLTESC 
Sbjct: 366 EQASPIADKIVFKKVKEGLGGNVRLILSGAAPLAAHIESFLRVVACAHVLQGYGLTESCG 425

Query: 423 GCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKR 482
           G F S+ +  +M+GTVG P+  V+ RLESVPEMGYDAL+S PRGEIC+RG TLFSGYYKR
Sbjct: 426 GTFVSIPNELSMLGTVGPPVPNVDIRLESVPEMGYDALASNPRGEICIRGKTLFSGYYKR 485

Query: 483 PDLTEEVIVDGWFHTGK-NPWQ 503
            DLT+EV +DGW HTG    WQ
Sbjct: 486 EDLTQEVFIDGWLHTGDVGEWQ 507

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate and linoleate.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q9T0A0|LACS4_ARATH Long chain acyl-CoA synthetase 4 OS=Arabidopsis thaliana GN=LACS4 PE=2 SV=1

 Score =  585 bits (1507), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 277/504 (54%), Positives = 364/504 (72%), Gaps = 2/504 (0%)

Query: 2   SETYTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQM 61
            + Y  +VEE +  +DG+PS GPVYR I+AKDG  +   G++S W  F  S ++ PNN M
Sbjct: 4   QKKYIFQVEEGKEGSDGRPSVGPVYRSIFAKDGFPDPIEGMDSCWDVFRMSVEKYPNNPM 63

Query: 62  LGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121
           LG R++ DGK G YVW TYQEVYD  ++ G+++RS GV    +CGIYG+N PEWII+MEA
Sbjct: 64  LGRREIVDGKPGKYVWQTYQEVYDIVMKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEA 123

Query: 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFA 181
           CN+  +  VPLYDTLGA+AVEFII+H+EVSI FV+E KI  +    P    Y+KT+VSF 
Sbjct: 124 CNAHGLYCVPLYDTLGADAVEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVSFG 183

Query: 182 NVSSSQKKEAEELGVSCFSWEEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGVVL 240
            VS  QK+EAE  G+  ++W+EFL+LG     +LP KKK++I TIMYTSGTTG+PKGV++
Sbjct: 184 GVSREQKEEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMI 243

Query: 241 TNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGD 300
           +N++IV  +  V ++     +  + +D Y S+LPLAHI+D++IE   I  G +IGFWRGD
Sbjct: 244 SNESIVTLIAGVIRLLKSANEALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGD 303

Query: 301 VRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGM 360
           V+ L+ED+ ELKPT+F  VPRV DR+Y+G+  K+S GG L K +F+ A++YK G MKKG 
Sbjct: 304 VKLLIEDLAELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFIFDSAFSYKFGYMKKGQ 363

Query: 361 PQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTES 420
              +A+PL D LVFSK+++  GG ++ +LSGAAPL  HVE FLRV +   + QGYGLTES
Sbjct: 364 SHVEASPLFDKLVFSKVKQGLGGNVRIILSGAAPLASHVESFLRVVACCHVLQGYGLTES 423

Query: 421 CSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYY 480
           C+G F SL D   M+GTVG P+  V+ RLESVPEM YDAL+S  RGEIC+RG TLFSGYY
Sbjct: 424 CAGTFVSLPDELGMLGTVGPPVPNVDIRLESVPEMEYDALASTARGEICIRGKTLFSGYY 483

Query: 481 KRPDLTEEVIVDGWFHTGK-NPWQ 503
           KR DLT+EV++DGW HTG    WQ
Sbjct: 484 KREDLTKEVLIDGWLHTGDVGEWQ 507

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate and linoleate.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q9T009|LACS5_ARATH Long chain acyl-CoA synthetase 5 OS=Arabidopsis thaliana GN=LACS5 PE=2 SV=1

 Score =  581 bits (1497), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 276/501 (55%), Positives = 357/501 (71%), Gaps = 2/501 (0%)

Query: 5   YTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGG 64
           +  +VE A+ A DG PS GPVYR  +A++G      G++S W  F  + ++ PNN+MLG 
Sbjct: 7   FIFEVEAAKEATDGNPSVGPVYRSTFAQNGFPNPIDGIQSCWDIFRTAVEKYPNNRMLGR 66

Query: 65  RKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNS 124
           R++S+GK G YVW TY+EVYD  I+ G+++RS G+  G++CGIYG NC EWII+MEACN+
Sbjct: 67  REISNGKAGKYVWKTYKEVYDIVIKLGNSLRSCGIKEGEKCGIYGINCCEWIISMEACNA 126

Query: 125 QAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVS 184
             +  VPLYDTLGA AVEFII+HAEVSIAFV+E KIP +    P    Y+KT+VSF  V 
Sbjct: 127 HGLYCVPLYDTLGAGAVEFIISHAEVSIAFVEEKKIPELFKTCPNSTKYMKTVVSFGGVK 186

Query: 185 SSQKKEAEELGVSCFSWEEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQ 243
             QK+EAE+LG+   SW+EFL+LG     ELP KK ++I TIMYTSGTTG+PKGV+++N+
Sbjct: 187 PEQKEEAEKLGLVIHSWDEFLKLGEGKQYELPIKKPSDICTIMYTSGTTGDPKGVMISNE 246

Query: 244 AIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRY 303
           +IV     V           SE+D Y S+LPLAH++D+ IE   I  G SIGFWRGDV+ 
Sbjct: 247 SIVTITTGVMHFLGNVNASLSEKDVYISYLPLAHVFDRAIEECIIQVGGSIGFWRGDVKL 306

Query: 304 LMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQN 363
           L+ED+ ELKP++F  VPRV DR+YTG+  K+S GG   KK+F+ A++YK GNMKKG    
Sbjct: 307 LIEDLGELKPSIFCAVPRVLDRVYTGLQQKLSGGGFFKKKVFDVAFSYKFGNMKKGQSHV 366

Query: 364 KAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSG 423
            A+P  D LVF+K+++  GG ++ +LSGAAPL  H+E FLRV +   + QGYGLTESC+G
Sbjct: 367 AASPFCDKLVFNKVKQGLGGNVRIILSGAAPLASHIESFLRVVACCNVLQGYGLTESCAG 426

Query: 424 CFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRP 483
            F +  D  +M+GTVG P+  V+ RLESVPEM YDAL S PRGEIC+RG TLFSGYYKR 
Sbjct: 427 TFATFPDELDMLGTVGPPVPNVDIRLESVPEMNYDALGSTPRGEICIRGKTLFSGYYKRE 486

Query: 484 DLTEEVIVDGWFHTGK-NPWQ 503
           DLT+EV +DGW HTG    WQ
Sbjct: 487 DLTKEVFIDGWLHTGDVGEWQ 507

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate and linoleate.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|O22898|LACS1_ARATH Long chain acyl-CoA synthetase 1 OS=Arabidopsis thaliana GN=LACS1 PE=2 SV=1

 Score =  492 bits (1266), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 238/497 (47%), Positives = 320/497 (64%), Gaps = 1/497 (0%)

Query: 3   ETYTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQML 62
           +++  KVEE     DGKPS GPVYR + ++ G     + + + W  F  S ++ P+N ML
Sbjct: 2   KSFAAKVEEGVKGIDGKPSVGPVYRNLLSEKGFPPIDSEITTAWDIFSKSVEKFPDNNML 61

Query: 63  GGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC 122
           G R++ D KVGPY+W TY+EVY+  ++ GSA+R+ G  PG R GIYG NCP+WIIAMEAC
Sbjct: 62  GWRRIVDEKVGPYMWKTYKEVYEEVLQIGSALRAAGAEPGSRVGIYGVNCPQWIIAMEAC 121

Query: 123 NSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFAN 182
            +  +  VPLYDTLG+ AV++I+ HAE+   FVQ+ KI  +L    +C   LK IVSF N
Sbjct: 122 AAHTLICVPLYDTLGSGAVDYIVEHAEIDFVFVQDTKIKGLLEPDCKCAKRLKAIVSFTN 181

Query: 183 VSSSQKKEAEELGVSCFSWEEFLQLGTLDCE-LPPKKKTNISTIMYTSGTTGEPKGVVLT 241
           VS     +A E+GV  +SW +FL +G    E   P K  NI TIMYTSGT+G+PKGVVLT
Sbjct: 182 VSDELSHKASEIGVKTYSWIDFLHMGREKPEDTNPPKAFNICTIMYTSGTSGDPKGVVLT 241

Query: 242 NQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDV 301
           +QA+   V+ +D          + +D Y SFLPLAHI D++ E +   KG S+G++ G++
Sbjct: 242 HQAVATFVVGMDLYMDQFEDKMTHDDVYLSFLPLAHILDRMNEEYFFRKGASVGYYHGNL 301

Query: 302 RYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMP 361
             L +DIQELKPT  +GVPRV++RI+ GI   +       + +F   Y +KL  + +G  
Sbjct: 302 NVLRDDIQELKPTYLAGVPRVFERIHEGIQKALQELNPRRRFIFNALYKHKLAWLNRGYS 361

Query: 362 QNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESC 421
            +KA+P+ D + F KIR+  GGR++ ++SG APL   +EEFLRVT    + QGYGLTE+ 
Sbjct: 362 HSKASPMADFIAFRKIRDKLGGRIRLLVSGGAPLSPEIEEFLRVTCCCFVVQGYGLTETL 421

Query: 422 SGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYK 481
            G      D   M+GTVG+P    E RLE V EMGYD L   P GEIC+RG  +FSGYYK
Sbjct: 422 GGTALGFPDEMCMLGTVGIPAVYNEIRLEEVSEMGYDPLGENPAGEICIRGQCMFSGYYK 481

Query: 482 RPDLTEEVIVDGWFHTG 498
            P+LTEEV+ DGWFHTG
Sbjct: 482 NPELTEEVMKDGWFHTG 498

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Acts in both the wax and cutin pathways. Preferentially uses palmitate, palmitoleate, linoleate and eicosenoate. Seems to have a specific activity against very long-chain fatty acid (VLCFA) class with acids longer than 24 carbons (C(24)).

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q8LKS5|LACS7_ARATH Long chain acyl-CoA synthetase 7, peroxisomal OS=Arabidopsis thaliana GN=LACS7 PE=1 SV=2

 Score =  317 bits (813), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 182/455 (40%), Positives = 257/455 (56%), Gaps = 17/455 (3%)

Query: 49  FCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIY 108
           F  + +    N+ LG R  SDG +G Y W+TY E        GS +   GVN GD  G+Y
Sbjct: 90  FVHAVETYAENKYLGTRVRSDGTIGEYSWMTYGEAASERQAIGSGLLFHGVNQGDCVGLY 149

Query: 109 GSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLP 168
             N PEW++   AC + +   VPLYDTLG +AV+F++NHA +   F     +  +LS L 
Sbjct: 150 FINRPEWLVVDHACAAYSFVSVPLYDTLGPDAVKFVVNHANLQAIFCVPQTLNILLSFLA 209

Query: 169 RCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCE-LPPKKKTNISTIMY 227
                ++ IV                GV+  S+++ L  G        P K  +I+TI Y
Sbjct: 210 EIP-SIRLIVVVGGADEHLPSLPRGTGVTIVSYQKLLSQGRSSLHPFSPPKPEDIATICY 268

Query: 228 TSGTTGEPKGVVLTNQAIVAEVL--SVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIET 285
           TSGTTG PKGVVLT+  ++A V   SV+  F  +       D Y S+LPLAHIY++  + 
Sbjct: 269 TSGTTGTPKGVVLTHGNLIANVAGSSVEAEFFPS-------DVYISYLPLAHIYERANQI 321

Query: 286 HCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLF 345
             ++ G ++GF++GDV  LM+D   L+PT+F  VPR+Y+RIY GI++ + S G + K+LF
Sbjct: 322 MGVYGGVAVGFYQGDVFKLMDDFAVLRPTIFCSVPRLYNRIYDGITSAVKSSGVVKKRLF 381

Query: 346 EFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRV 405
           E AYN K   +  G      +   D LVF+KI+E  GGR++ M SGA+PL   V +FLR+
Sbjct: 382 EIAYNSKKQAIING---RTPSAFWDKLVFNKIKEKLGGRVRFMGSGASPLSPDVMDFLRI 438

Query: 406 TSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSS-VP 464
             G  + +GYG+TE+ S   +++ D  N+ G VG P    E +L  VPEM Y +     P
Sbjct: 439 CFGCSVREGYGMTET-SCVISAMDDGDNLSGHVGSPNPACEVKLVDVPEMNYTSDDQPYP 497

Query: 465 RGEICLRGNTLFSGYYKRPDLTEEVIV-DGWFHTG 498
           RGEIC+RG  +F GYYK  + T E++  DGW HTG
Sbjct: 498 RGEICVRGPIIFKGYYKDEEQTREILDGDGWLHTG 532

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate, linoleate and eicosenoate. Displays redundant function with LACS7 into the seed development process.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q8LPS1|LACS6_ARATH Long chain acyl-CoA synthetase 6, peroxisomal OS=Arabidopsis thaliana GN=LACS6 PE=1 SV=1

 Score =  315 bits (808), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 184/442 (41%), Positives = 252/442 (57%), Gaps = 13/442 (2%)

Query: 60  QMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM 119
           + LG R   DG VG Y W+TY E   A    GS +   G+  G   GIY  N PEW+I  
Sbjct: 101 KYLGTRVRVDGTVGDYKWMTYGEAGTARTALGSGLVHHGIPMGSSVGIYFINRPEWLIVD 160

Query: 120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVS 179
            AC+S +   VPLYDTLG +AV+FI+NHA V   F     + S+LSCL         +V 
Sbjct: 161 HACSSYSYVSVPLYDTLGPDAVKFIVNHATVQAIFCVAETLNSLLSCLSEMPSVRLVVVV 220

Query: 180 FANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCE-LPPKKKTNISTIMYTSGTTGEPKGV 238
              + S     +   GV   S+   L  G  + +   P K  +++TI YTSGTTG PKGV
Sbjct: 221 GGLIESLPSLPSSS-GVKVVSYSVLLNQGRSNPQRFFPPKPDDVATICYTSGTTGTPKGV 279

Query: 239 VLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWR 298
           VLT+  ++A V                 D Y S+LPLAHIY++  +   ++ G ++GF++
Sbjct: 280 VLTHANLIANVAGSSFS-----VKFFSSDVYISYLPLAHIYERANQILTVYFGVAVGFYQ 334

Query: 299 GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKK 358
           GD   L++D+  L+PT+FS VPR+Y+RIY GI N + + G L ++LF  AYN K   +  
Sbjct: 335 GDNMKLLDDLAALRPTVFSSVPRLYNRIYAGIINAVKTSGGLKERLFNAAYNAKKQALLN 394

Query: 359 GMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLT 418
           G     A+P+ D LVF+KI++  GGR++ M SGA+PL   V EFL+V  G  +T+GYG+T
Sbjct: 395 G---KSASPIWDRLVFNKIKDRLGGRVRFMTSGASPLSPEVMEFLKVCFGGRVTEGYGMT 451

Query: 419 ESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGY-DALSSVPRGEICLRGNTLFS 477
           E+ S   + + +  N+ G VG P    E +L  VPEM Y  A    PRGEIC+RG  +F+
Sbjct: 452 ET-SCVISGMDEGDNLTGHVGSPNPACEVKLVDVPEMNYTSADQPHPRGEICVRGPIIFT 510

Query: 478 GYYKRPDLTEEVI-VDGWFHTG 498
           GYYK    T+EVI  DGW HTG
Sbjct: 511 GYYKDEIQTKEVIDEDGWLHTG 532

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate, linoleate and eicosenoate. Might play a regulatory role both in fatty acid import into glyoxysomes and in fatty acid beta-oxidation. Displays redundant function with LACS7 into the seed development process.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q1ZXQ4|FCSB_DICDI Fatty acyl-CoA synthetase B OS=Dictyostelium discoideum GN=fcsB PE=2 SV=1

 Score =  292 bits (747), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 167/485 (34%), Positives = 262/485 (54%), Gaps = 15/485 (3%)

Query: 21  SGGPVYRCIYAKDGLLESPAGLE--SPWQFFCDSAKRIPNNQMLGGRKV-SDGKVGPYVW 77
           +GG + R     D L+      E  + +     S K+    +  G RK  S+G +G + W
Sbjct: 39  NGGRIRRNSACADHLISFLEDDEIYTLYDSLVKSCKKYGERKCFGERKKDSNGNLGKFEW 98

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           ++Y    +        +   G+ P  + GI+  N  EW+I   A   Q+   V  Y+TLG
Sbjct: 99  ISYNTYLERCEYIQQGLCELGLKPKSKVGIFSKNRLEWLIVHSASFIQSYCVVSFYETLG 158

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
             ++ ++  HAE+ +AF     +   L  + +    LKTI+ F ++       A+ELGV+
Sbjct: 159 VESLSYVTEHAEIGLAFCSAETLQKTLD-IAKGVKVLKTIICFDSIDKEHYNIAKELGVT 217

Query: 198 CFSWEEFLQLGT----LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVD 253
            ++++E ++ G          PP   T +STIMYTSGTTG PKGV++T++ + + V +V 
Sbjct: 218 LYTYDEIMKKGKEANGKHKHTPPTPDT-LSTIMYTSGTTGPPKGVMITHKNLTSVVCAVS 276

Query: 254 QMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKP 313
               V      + D ++S+LP AH+ ++++     H G +IG + GD+  ++ +++ L P
Sbjct: 277 DFIKVY-----DTDVHYSYLPYAHVLERVVILAAFHFGAAIGIFSGDISNILVEVKLLSP 331

Query: 314 TMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLV 373
           T+F GVPRV++RI T +  +IS   AL + LF  AYN K  +++ G        +LD + 
Sbjct: 332 TLFIGVPRVFERIKTNVFKEISKKPALLRTLFNGAYNLKYLSIQHGFKLPIIEKVLDLVF 391

Query: 374 FSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFN 433
           FSKI++A GG+++ +LSG+APL    E FLRV     + QGYG +E C G      D   
Sbjct: 392 FSKIKQALGGKVRVILSGSAPLSFDTEVFLRVVMCCCVLQGYGASEGCGGDACKRLDD-E 450

Query: 434 MIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDG 493
            +GT+G P  + E +L  VPE+GYD+   V  GE+CLRG ++ SGYYK  + T E   DG
Sbjct: 451 SVGTIGPPFASNEIKLVDVPELGYDSNGEVQTGEVCLRGPSISSGYYKDEEKTREEFKDG 510

Query: 494 WFHTG 498
           WFHTG
Sbjct: 511 WFHTG 515

Long chain fatty acid acyl-CoA synthetases catalyze the formation of a thiester bond between a free fatty acid and coenzyme A during fatty acid metabolic process.

Dictyostelium discoideum (taxid: 44689)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q55DR6|FCSA_DICDI Fatty acyl-CoA synthetase A OS=Dictyostelium discoideum GN=fcsA PE=1 SV=1

 Score =  284 bits (727), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 166/448 (37%), Positives = 263/448 (58%), Gaps = 21/448 (4%)

Query: 58  NNQMLGGRKV-SDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWI 116
           ++  LG R++ +DGK G Y W++Y++    A   GSA+   G+N GDR GI+  N PEW+
Sbjct: 67  DSNFLGIRELLADGKRGDYKWISYKQACIRANNIGSALVQLGLNKGDRIGIFSINRPEWV 126

Query: 117 IAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKT 176
           ++  A  + ++  V LY TLGANA+E+++NH+E+S+   +   +  ILS +P     +KT
Sbjct: 127 LSDMAAMNHSLVPVALYATLGANAIEYVVNHSEISVLLCEGKNVEKILS-MPGTT--IKT 183

Query: 177 IVSFANV-SSSQKKEAEELGVSCFSWEEFLQLGTLD---CELPPKKKTNISTIMYTSGTT 232
           IVS+  +  ++  K  +   V  +   +F +LG  +    E+P  +  ++ T++YTSG+T
Sbjct: 184 IVSYDPLPQATLDKFKDNENVKLYLLSDFEKLGEQNPAQHEVPSPE--DLCTLLYTSGST 241

Query: 233 GEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGC 292
           G PKGV+LT+  +V+EV   +  F   G +   ED + S+LPLAH +++ + +   + G 
Sbjct: 242 GNPKGVMLTHTNMVSEVAGAN--FSPAGVI--PEDVHMSYLPLAHSFERAVVSLMCYVGG 297

Query: 293 SIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYK 352
            IGF+ G +  L  DIQ L+PT   G PRV+ R++  +   +++   L K LF +  N K
Sbjct: 298 QIGFFSGLIPELFNDIQVLRPTFLCGAPRVWQRLHDKLWFTVNNDSWLKKFLFNWGLNSK 357

Query: 353 LGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLT 412
              ++ G       P+ D LVFSK ++  GGR++ +LSG+APL   + EFLR     P+ 
Sbjct: 358 QSALRLG----STTPIWDKLVFSKTKDRLGGRVKFILSGSAPLDPKLAEFLRACFCCPVV 413

Query: 413 QGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSS-VPRGEICLR 471
            GYGL+E+  G   +  +  N +G VG P++  E +L  VPEM Y +     PRGE+C+R
Sbjct: 414 SGYGLSENVGGASVAYPED-NNVGHVGPPLSACEMKLIDVPEMNYFSTDKPCPRGEVCIR 472

Query: 472 GNTLFSGYYKRPDLT-EEVIVDGWFHTG 498
           G  +F GY+K P+ T E++  DGWFHTG
Sbjct: 473 GFNVFKGYFKDPEKTKEDLKEDGWFHTG 500

Long chain fatty acid acyl-CoA synthetases catalyze the formation of a thiester bond between a free fatty acid and coenzyme A during fatty acid metabolic process. May mediate fatty acid retrieval from the lumen of endosomes into the cytoplasm.

Dictyostelium discoideum (taxid: 44689)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|P41216|ACSL1_MOUSE Long-chain-fatty-acid--CoA ligase 1 OS=Mus musculus GN=Acsl1 PE=1 SV=2

 Score =  269 bits (688), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 161/454 (35%), Positives = 254/454 (55%), Gaps = 32/454 (7%)

Query: 58  NNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDR--CGIYGSNCPEW 115
           N   LG RK +     PY W++Y+EV + A   GS +  +G  P      G++  N PEW
Sbjct: 106 NGPCLGSRKPNQ----PYEWISYKEVAELAECIGSGLIQKGFKPCSEQFIGLFSQNRPEW 161

Query: 116 IIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSIL-----SCLPRC 170
           +I  + C S ++  VPLYDTLGA+A+ +I+N AE+S+ F  + +   +L     + L  C
Sbjct: 162 VIVEQGCFSYSMVVVPLYDTLGADAITYIVNKAELSVIFADKPEKAKLLLEGVENKLTPC 221

Query: 171 CLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELP-PKKKTNISTIMYTS 229
              LK IV   +  S   +  ++ GV   S +    LG ++   P P +  +++ I +TS
Sbjct: 222 ---LKIIVIMDSYGSDLVERGKKCGVEIISLKALEDLGRVNRVKPKPPEPEDLAIICFTS 278

Query: 230 GTTGEPKGVVLTNQAIVAE----VLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIET 285
           GTTG PKG ++T+Q I+ +    + + +  F+      S +D   SFLPLAH+++ ++E 
Sbjct: 279 GTTGNPKGAMITHQNIINDCSGFIKATESAFI-----ASTDDVLISFLPLAHMFETVVEC 333

Query: 286 HCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLF 345
             +  G  IGF++GD+R LM+D++ L+PT+F  VPR+ +R++  I  + ++  +L + L 
Sbjct: 334 VMLCHGAKIGFFQGDIRLLMDDLKVLQPTIFPVVPRLLNRMFDRIFGQANT--SLKRWLL 391

Query: 346 EFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRV 405
           +FA   K   ++ G+ +N +  L D L+F KI+ + GG+++ M++GAAP+   V  FLR 
Sbjct: 392 DFASKRKEAELRSGIVRNNS--LWDKLIFHKIQSSLGGKVRLMITGAAPVSATVLTFLRT 449

Query: 406 TSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPR 465
             G    +GYG TE  +GC  SL   +   G VG PM     +L  V EM Y  L+S   
Sbjct: 450 ALGCQFYEGYGQTECTAGCCLSLPGDWTA-GHVGAPMPCNYVKLVDVEEMNY--LASKGE 506

Query: 466 GEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTG 498
           GE+C++G  +F GY K P  T E +  DGW HTG
Sbjct: 507 GEVCVKGANVFKGYLKDPARTAEALDKDGWLHTG 540

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses oleate, arachidonate, eicosapentaenoate and docosahexaenoate as substrates.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	510
224103487	658	predicted protein [Populus trichocarpa]	0.978	0.758	0.776	0.0
449455210	661	PREDICTED: long chain acyl-CoA synthetas	0.986	0.760	0.758	0.0
449474962	661	PREDICTED: long chain acyl-CoA synthetas	0.986	0.760	0.754	0.0
356544492	656	PREDICTED: long chain acyl-CoA synthetas	0.984	0.765	0.742	0.0
255556171	660	acyl CoA synthetase, putative [Ricinus c	0.972	0.751	0.754	0.0
225428594	659	PREDICTED: long chain acyl-CoA synthetas	0.978	0.757	0.744	0.0
356523415	660	PREDICTED: long chain acyl-CoA synthetas	0.986	0.762	0.736	0.0
356541119	656	PREDICTED: long chain acyl-CoA synthetas	0.984	0.765	0.738	0.0
356575070	660	PREDICTED: long chain acyl-CoA synthetas	0.986	0.762	0.734	0.0
115485907	661	Os11g0558300 [Oryza sativa Japonica Grou	0.986	0.760	0.680	0.0

>gi|224103487|ref|XP_002313075.1| predicted protein [Populus trichocarpa] gi|222849483|gb|EEE87030.1| predicted protein [Populus trichocarpa]

 Score =  828 bits (2138), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/500 (77%), Positives = 442/500 (88%), Gaps = 1/500 (0%)

Query: 5   YTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGG 64
           + VKVEE+RPA+DGKPS GPVYR IYAKDGL++ PAGLESPWQFF DSA + P N+MLG 
Sbjct: 3   FIVKVEESRPASDGKPSAGPVYRSIYAKDGLMDLPAGLESPWQFFSDSALKNPENKMLGR 62

Query: 65  RKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNS 124
           R+V D KVGPYVWLTY+EVYD+A+R GSAMR RGVNPGDRCGIYGSNCPEWI AMEAC+S
Sbjct: 63  RQVIDSKVGPYVWLTYKEVYDSAMRMGSAMRRRGVNPGDRCGIYGSNCPEWITAMEACDS 122

Query: 125 QAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVS 184
           QAITYVPLYDTLG NAVEFIINHAEVSIAFVQENK+ SILSCLP+C   LKTIVSF  +S
Sbjct: 123 QAITYVPLYDTLGPNAVEFIINHAEVSIAFVQENKLSSILSCLPKCSSNLKTIVSFGKIS 182

Query: 185 SSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQA 244
             QKKEA+ELGVSCFSWEEF QLG+LDCELPPK KT++ TIMYTSGTTGEPKGV+LTN A
Sbjct: 183 DMQKKEADELGVSCFSWEEFPQLGSLDCELPPKHKTDVCTIMYTSGTTGEPKGVILTNGA 242

Query: 245 IVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYL 304
           +VAEVLSVDQ+  +T +V +EED+YFSFLPLAH+YDQ+IET+CI+KG SIGFW+GDVRYL
Sbjct: 243 LVAEVLSVDQLLFLTDRVAAEEDSYFSFLPLAHVYDQVIETYCIYKGASIGFWQGDVRYL 302

Query: 305 MEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNK 364
           MEDIQELKP++F GVPRVYDRIYTG   K+S+GG L KKLF+FAYNYKLG ++KG PQ K
Sbjct: 303 MEDIQELKPSIFCGVPRVYDRIYTGTLAKVSAGGGLKKKLFDFAYNYKLGYLEKGFPQEK 362

Query: 365 AAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGC 424
           AAPLLD LVF K ++A GGR++ +LSGAAPLP HVEEFLRVTS + L+QGYGLTESC GC
Sbjct: 363 AAPLLDRLVFDKTKQALGGRVRILLSGAAPLPKHVEEFLRVTSCSTLSQGYGLTESCGGC 422

Query: 425 FTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPD 484
           FTS+ +V+ M+GTVGVPMTT+E+RLESVPEMGYDALSSVPRGEICLRG+TLFSGY+KR D
Sbjct: 423 FTSIGNVYPMVGTVGVPMTTIESRLESVPEMGYDALSSVPRGEICLRGSTLFSGYHKRED 482

Query: 485 LTEEVIVDGWFHTGK-NPWQ 503
           LT EV+VDGWFHTG    WQ
Sbjct: 483 LTNEVLVDGWFHTGDIGEWQ 502

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455210|ref|XP_004145346.1| PREDICTED: long chain acyl-CoA synthetase 2-like [Cucumis sativus]

 Score =  807 bits (2085), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/505 (75%), Positives = 437/505 (86%), Gaps = 2/505 (0%)

Query: 1   MSETYTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQ 60
           MS +YTV VE   P + G+PS GPVYR IYAKDGLL+ P  L+SPWQFF DS KR P N 
Sbjct: 1   MSTSYTVVVEADTPQSGGRPSAGPVYRSIYAKDGLLQLPDELQSPWQFFSDSVKRNPGNP 60

Query: 61  MLGGRKVS-DGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM 119
           MLG R+ + D K G YVWLTYQE YDAAIR GSA+R RGVN GDRCGIYGSNCPEWII+M
Sbjct: 61  MLGRRQTNGDSKAGSYVWLTYQEAYDAAIRMGSAIRKRGVNSGDRCGIYGSNCPEWIISM 120

Query: 120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVS 179
           EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENK+ SI SCLPRC   LKTIVS
Sbjct: 121 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKLASIFSCLPRCSNQLKTIVS 180

Query: 180 FANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVV 239
           F NVSS  KKEAEELGVSCFSWEEF QLG+LDCELP K+KT+I TIMYTSGTTGEPKGV+
Sbjct: 181 FTNVSSVLKKEAEELGVSCFSWEEFCQLGSLDCELPSKQKTDICTIMYTSGTTGEPKGVI 240

Query: 240 LTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG 299
           L N A++AEVLSV+ + ++T KV +EED+YFSFLPLAH+YDQI+ET+CI+KG SIGFWRG
Sbjct: 241 LNNTAVMAEVLSVEHLLLLTDKVATEEDSYFSFLPLAHVYDQIMETYCIYKGSSIGFWRG 300

Query: 300 DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKG 359
           D+R+L++DIQELKPT+FSGVPRVYDRIY+GI NK+SSGG+L K LF++AY YKLG +KKG
Sbjct: 301 DIRFLLDDIQELKPTIFSGVPRVYDRIYSGILNKVSSGGSLRKMLFDYAYIYKLGYLKKG 360

Query: 360 MPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTE 419
           + Q KAAPLLD LVF KI+EAFGGR++  LSGAAPLP HVEEFLRVTS A L+QGYGLTE
Sbjct: 361 LLQEKAAPLLDKLVFDKIKEAFGGRVRLFLSGAAPLPRHVEEFLRVTSCATLSQGYGLTE 420

Query: 420 SCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGY 479
           SC GCFTS+A+VF M+GTVGVP+TT+EARLESVP+MGYDAL++ PRGEICLRG+TLFSGY
Sbjct: 421 SCGGCFTSIANVFTMMGTVGVPVTTIEARLESVPDMGYDALATTPRGEICLRGSTLFSGY 480

Query: 480 YKRPDLTEEVIVDGWFHTGK-NPWQ 503
           +KR DLT EV++DGWFHTG    WQ
Sbjct: 481 HKRQDLTGEVLIDGWFHTGDIGEWQ 505

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449474962|ref|XP_004154333.1| PREDICTED: long chain acyl-CoA synthetase 2-like [Cucumis sativus]

 Score =  801 bits (2070), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/505 (75%), Positives = 435/505 (86%), Gaps = 2/505 (0%)

Query: 1   MSETYTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQ 60
           MS +YTV VE   P + G+PS GPVYR IYAKDGLL+ P  L+SPWQFF DS KR P N 
Sbjct: 1   MSTSYTVVVEADTPQSGGRPSAGPVYRSIYAKDGLLQLPDELQSPWQFFSDSVKRNPGNP 60

Query: 61  MLGGRKVS-DGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM 119
           MLG R+ + D KV    WLTYQE YDAAIR GSA+R RGVN GDRCGIYGSNCPEWII+M
Sbjct: 61  MLGRRQTNGDSKVAAIRWLTYQEAYDAAIRMGSAIRKRGVNSGDRCGIYGSNCPEWIISM 120

Query: 120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVS 179
           EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENK+ SI SCLPRC   LKTIVS
Sbjct: 121 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKLASIFSCLPRCSNQLKTIVS 180

Query: 180 FANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVV 239
           F NVSS  KKEAEELGVSCFSWEEF QLG+LDCELP K+KT+I TIMYTSGTTGEPKGV+
Sbjct: 181 FTNVSSVLKKEAEELGVSCFSWEEFCQLGSLDCELPSKQKTDICTIMYTSGTTGEPKGVI 240

Query: 240 LTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG 299
           L N A++AEVLSV+ + ++T KV +EED+YFSFLPLAH+YDQI+ET+CI+KG SIGFWRG
Sbjct: 241 LNNTAVMAEVLSVEHLLLLTDKVATEEDSYFSFLPLAHVYDQIMETYCIYKGSSIGFWRG 300

Query: 300 DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKG 359
           D+R+L++DIQELKPT+FSGVPRVYDRIY+GI NK+SSGG+L K LF++AY YKLG +KKG
Sbjct: 301 DIRFLLDDIQELKPTIFSGVPRVYDRIYSGILNKVSSGGSLRKMLFDYAYIYKLGYLKKG 360

Query: 360 MPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTE 419
           + Q KAAPLLD LVF KI+EAFGGR++  LSGAAPLP HVEEFLRVTS A L+QGYGLTE
Sbjct: 361 LLQEKAAPLLDKLVFDKIKEAFGGRVRLFLSGAAPLPRHVEEFLRVTSCATLSQGYGLTE 420

Query: 420 SCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGY 479
           SC GCFTS+A+VF M+GTVGVP+TT+EARLESVP+MGYDAL++ PRGEICLRG+TLFSGY
Sbjct: 421 SCGGCFTSIANVFTMMGTVGVPVTTIEARLESVPDMGYDALATTPRGEICLRGSTLFSGY 480

Query: 480 YKRPDLTEEVIVDGWFHTGK-NPWQ 503
           +KR DLT EV++DGWFHTG    WQ
Sbjct: 481 HKRQDLTGEVLIDGWFHTGDIGEWQ 505

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544492|ref|XP_003540684.1| PREDICTED: long chain acyl-CoA synthetase 2-like [Glycine max]

 Score =  800 bits (2065), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/504 (74%), Positives = 432/504 (85%), Gaps = 2/504 (0%)

Query: 1   MSETYTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQ 60
           M E YTVKVEEARPA   KPS GPVYRCIYAKD L   P+  ESPW+FF D+  R P+N 
Sbjct: 1   MPEVYTVKVEEARPATHEKPSAGPVYRCIYAKDALTVLPSHFESPWEFFRDTTTRCPSNP 60

Query: 61  MLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120
           MLG R+ SD KVGPY W+TYQE YDAAIR GSAMRSR VNPGDRCGIYGSNCPEWIIAME
Sbjct: 61  MLGRRQKSDSKVGPYEWITYQEAYDAAIRMGSAMRSRDVNPGDRCGIYGSNCPEWIIAME 120

Query: 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSF 180
           ACNS A+TYVPLYDTLG NAVEFIINHAEVSIAFVQ+NK PS+LSCL RC   LKT+VSF
Sbjct: 121 ACNSYAVTYVPLYDTLGPNAVEFIINHAEVSIAFVQDNKFPSVLSCLDRCS-SLKTVVSF 179

Query: 181 ANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVL 240
            NVS++QKKEAEELG SCFSWEEFLQLG +D +LP K KTNI TIMYTSGTTGEPKGV++
Sbjct: 180 GNVSTTQKKEAEELGASCFSWEEFLQLGNMDLDLPLKNKTNICTIMYTSGTTGEPKGVII 239

Query: 241 TNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGD 300
            N+A + +VLS+DQ+  +T +V +E+D YFSFLPLAH+YDQI+ET+CI+KG SIGFW+GD
Sbjct: 240 KNEAFMTQVLSIDQILNLTDRVGTEDDVYFSFLPLAHVYDQIMETYCIYKGSSIGFWQGD 299

Query: 301 VRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGM 360
           VR+LMEDIQ LKPT+F  VPRVYDR+Y GIS+KISSGGAL   LF++AYNYKLG ++KG+
Sbjct: 300 VRFLMEDIQALKPTLFCAVPRVYDRVYAGISSKISSGGALQSTLFQYAYNYKLGYLEKGL 359

Query: 361 PQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTES 420
           PQ+KAAPL D LVF KI++A GGR++ +LSGAAPLP HVEEFLRVT GA ++QGYGLTES
Sbjct: 360 PQDKAAPLFDKLVFDKIKQALGGRVRLLLSGAAPLPRHVEEFLRVTFGATMSQGYGLTES 419

Query: 421 CSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYY 480
           C GCFT++++VF+M+GT+GVPMTT+E+RLESVPEMGYDALSS  RGEICLRGNTLFSGY+
Sbjct: 420 CGGCFTAISNVFSMMGTIGVPMTTIESRLESVPEMGYDALSSEARGEICLRGNTLFSGYH 479

Query: 481 KRPDLTEEVIVDGWFHTGK-NPWQ 503
           K  DLTEEV+VDGWFHTG    WQ
Sbjct: 480 KHQDLTEEVMVDGWFHTGDIGEWQ 503

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556171|ref|XP_002519120.1| acyl CoA synthetase, putative [Ricinus communis] gi|223541783|gb|EEF43331.1| acyl CoA synthetase, putative [Ricinus communis]

 Score =  796 bits (2057), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/500 (75%), Positives = 432/500 (86%), Gaps = 4/500 (0%)

Query: 1   MSETYTVKVEEARPAA-DGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNN 59
           MS  Y VKVEE+RPAA DGKPS GPV+R IYAKDGLLE  A L+SPWQF  DSA + PNN
Sbjct: 1   MSMEYLVKVEESRPAASDGKPSAGPVFRSIYAKDGLLEVSAELDSPWQFLSDSALKNPNN 60

Query: 60  QMLGGRKVSDGKV-GPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIA 118
           +MLG R V+D KV GPYVWLTY+EVY+ AIR GSAMRSRG+NPGDRCGIYGSNCPEWI A
Sbjct: 61  RMLGRRLVTDSKVAGPYVWLTYKEVYETAIRIGSAMRSRGLNPGDRCGIYGSNCPEWITA 120

Query: 119 MEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIV 178
           MEAC S AIT+VPLYDTLG NAVEFI+NHAEVS+AFVQE+K+ SIL+CLP+C  YLK+  
Sbjct: 121 MEACKSHAITFVPLYDTLGPNAVEFIVNHAEVSLAFVQESKLSSILACLPKCSSYLKS-- 178

Query: 179 SFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGV 238
           +F +VS+ QKKEAEELG SCFSWEEF QLG+LDCELP K K +I TIMYTSGTTGEPKGV
Sbjct: 179 NFGSVSAMQKKEAEELGASCFSWEEFCQLGSLDCELPAKHKGDICTIMYTSGTTGEPKGV 238

Query: 239 VLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWR 298
           +LTN AI+AEVLSVD +  +T +  +EED+YFSFLPLAH+YDQ+IET+CI KG SIGFWR
Sbjct: 239 LLTNGAIMAEVLSVDHLLFLTDRAATEEDSYFSFLPLAHVYDQVIETYCIQKGASIGFWR 298

Query: 299 GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKK 358
           GDVR+L+ED Q LKP++F GVPRVYDRIYTG   KISSGGAL KKLF+FAY+YKLGN++K
Sbjct: 299 GDVRFLLEDAQALKPSIFCGVPRVYDRIYTGTMQKISSGGALRKKLFDFAYSYKLGNLQK 358

Query: 359 GMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLT 418
           G+PQ +AAPLLD LVF K ++  GGR++ MLSGAAPLP HVEEFLRVTS + L+QGYGLT
Sbjct: 359 GLPQAQAAPLLDRLVFEKTKQTLGGRVRIMLSGAAPLPKHVEEFLRVTSCSTLSQGYGLT 418

Query: 419 ESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSG 478
           ESC GC TS+ DVF M+GTVGVPMTT+E RLESVPEMGYDALSSVPRGEICLRGNTLFSG
Sbjct: 419 ESCGGCLTSIGDVFPMVGTVGVPMTTIEVRLESVPEMGYDALSSVPRGEICLRGNTLFSG 478

Query: 479 YYKRPDLTEEVIVDGWFHTG 498
           Y+KR DLT+EV++DGWFHTG
Sbjct: 479 YHKREDLTKEVLIDGWFHTG 498

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428594|ref|XP_002281151.1| PREDICTED: long chain acyl-CoA synthetase 2 [Vitis vinifera] gi|297741400|emb|CBI32531.3| unnamed protein product [Vitis vinifera]

 Score =  796 bits (2057), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/500 (74%), Positives = 434/500 (86%), Gaps = 1/500 (0%)

Query: 5   YTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGG 64
           YTVKV ++ PA + +PS GPVYRCIYA++GLLE P G+ESPW+FF DS +R P NQMLG 
Sbjct: 4   YTVKVADSIPATEERPSAGPVYRCIYAENGLLEVPKGMESPWEFFSDSVERNPKNQMLGR 63

Query: 65  RKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNS 124
           R++ + K GPYVWLTY+E YDAA+R GSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNS
Sbjct: 64  RQIINSKAGPYVWLTYREAYDAALRMGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNS 123

Query: 125 QAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVS 184
           QAI YVPLYD+LGANAVEFIINHAEVSIAFVQE+KIP++L+CLP+C  YLKTI+SF  +S
Sbjct: 124 QAIPYVPLYDSLGANAVEFIINHAEVSIAFVQESKIPAMLTCLPKCTSYLKTIISFGKIS 183

Query: 185 SSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQA 244
           SSQK+EAEELGVSCFSWEEF  LG+LDCELPPK+KT+I TIMYTSGTTGEPKGVVL+N+A
Sbjct: 184 SSQKEEAEELGVSCFSWEEFALLGSLDCELPPKQKTDICTIMYTSGTTGEPKGVVLSNEA 243

Query: 245 IVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYL 304
           I+AEVLS DQ+ + T KV +EEDTYFSFLPLAH++DQI+ET+CI+KG SIGFW  DVRYL
Sbjct: 244 IMAEVLSTDQLLLETDKVATEEDTYFSFLPLAHVFDQIMETYCIYKGSSIGFWGADVRYL 303

Query: 305 MEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNK 364
           MEDIQELKPT+F GVPRVY+RIY G   KISSGGAL K LF++AYNYKL N++KG+ Q++
Sbjct: 304 MEDIQELKPTIFCGVPRVYERIYGGAIAKISSGGALRKALFQYAYNYKLRNLEKGLRQDE 363

Query: 365 AAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGC 424
           AAP LD L+F KI++ FGGR++ + SGAAPL  HVEEFLRVTS + L+QGYGLTESC GC
Sbjct: 364 AAPRLDRLIFDKIKQGFGGRVRLLFSGAAPLSRHVEEFLRVTSCSVLSQGYGLTESCGGC 423

Query: 425 FTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPD 484
            TS+ + F+M+GTVGVP  T+EARLESVPEMGYDALS+VPRGEICLRG TLFSGY+KR D
Sbjct: 424 LTSIVNEFSMMGTVGVPYPTIEARLESVPEMGYDALSNVPRGEICLRGKTLFSGYFKRQD 483

Query: 485 LTEEVIVDGWFHTGK-NPWQ 503
           LTE  +VDGWFHTG    WQ
Sbjct: 484 LTESALVDGWFHTGDIGEWQ 503

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356523415|ref|XP_003530335.1| PREDICTED: long chain acyl-CoA synthetase 2-like [Glycine max]

 Score =  791 bits (2043), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/504 (73%), Positives = 430/504 (85%), Gaps = 1/504 (0%)

Query: 1   MSETYTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQ 60
           M E YTVKVEE RPA D KPS GPVYR IYAKDGLLE P+  ESPW FF DS KR PNN+
Sbjct: 1   MPEVYTVKVEEGRPATDAKPSAGPVYRSIYAKDGLLEVPSDFESPWDFFRDSVKRNPNNK 60

Query: 61  MLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120
           MLG R+ ++ KVG Y WLTYQ+VYDAA++ GSAMRSRGVNPGDRCGIYGSNCPEWII ME
Sbjct: 61  MLGRRQKTESKVGSYTWLTYQDVYDAALKMGSAMRSRGVNPGDRCGIYGSNCPEWIIVME 120

Query: 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSF 180
           ACNS A +YVPLYDTLG NAVEFIINHAEVSIAFVQE KIPSILSCL +C   LKTIVSF
Sbjct: 121 ACNSCAASYVPLYDTLGPNAVEFIINHAEVSIAFVQEKKIPSILSCLAQCSSNLKTIVSF 180

Query: 181 ANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVL 240
            +VS++QKKEAEE G SCFSW EFLQLG LD +LP KKK +I TIMYTSGTTG+PKGVV+
Sbjct: 181 GSVSTTQKKEAEEHGASCFSWGEFLQLGCLDWDLPSKKKNDICTIMYTSGTTGDPKGVVI 240

Query: 241 TNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGD 300
            N+A +AEVLSVD + ++T +V  E+D YFSFLPLAH+YDQI+ET+CI+KG SIGFW+GD
Sbjct: 241 KNEAFMAEVLSVDHIIMLTDRVVGEDDVYFSFLPLAHVYDQIMETYCIYKGSSIGFWQGD 300

Query: 301 VRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGM 360
           VR+L+ED+Q LKPT+F GVPRV+DRIY GI +K+SS G L   LF+ AYNYKL +++KG+
Sbjct: 301 VRFLLEDVQALKPTIFCGVPRVFDRIYAGIKSKVSSAGGLQSTLFQCAYNYKLKSLEKGL 360

Query: 361 PQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTES 420
           PQ+KAAPL D LVF K + A GGR++ +LSGAAPLP HVEEF+RVTSG+ L+QGYGLTES
Sbjct: 361 PQHKAAPLFDRLVFDKTKLALGGRVRILLSGAAPLPRHVEEFMRVTSGSTLSQGYGLTES 420

Query: 421 CSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYY 480
           C+GCFT++ DV++M GTVGVPMTT+EARLESVPEMGYDALS+VPRGEICLRGNTLFSGY+
Sbjct: 421 CAGCFTAIGDVYSMTGTVGVPMTTIEARLESVPEMGYDALSNVPRGEICLRGNTLFSGYH 480

Query: 481 KRPDLTEEVIVDGWFHTGK-NPWQ 503
           KR DLT+EV+VDGWFHTG    WQ
Sbjct: 481 KREDLTKEVMVDGWFHTGDIGEWQ 504

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356541119|ref|XP_003539030.1| PREDICTED: long chain acyl-CoA synthetase 2-like [Glycine max]

 Score =  790 bits (2039), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/504 (73%), Positives = 432/504 (85%), Gaps = 2/504 (0%)

Query: 1   MSETYTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQ 60
           M E Y+VKVEEARPA   KPS GPVYRCIYAKD L + P+  +SPWQFF D+  R P+N 
Sbjct: 1   MPELYSVKVEEARPATHEKPSAGPVYRCIYAKDALTQLPSHFQSPWQFFRDTTTRCPSNP 60

Query: 61  MLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120
           MLG R+ SD KVGPY W+TYQE YDAAIR GSAMRSRGVNPG RCGIYGSNCPEWIIAM+
Sbjct: 61  MLGRRQKSDSKVGPYQWITYQEAYDAAIRMGSAMRSRGVNPGYRCGIYGSNCPEWIIAMQ 120

Query: 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSF 180
           ACNS A+TYVPLYDTLG NAVEFIINHAEVSIAFVQ++KIPS+LSCL R    LKTIVSF
Sbjct: 121 ACNSYAVTYVPLYDTLGPNAVEFIINHAEVSIAFVQDSKIPSVLSCLDRWS-SLKTIVSF 179

Query: 181 ANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVL 240
            NVS++QKKEAEELG SCFSWEEFLQ+G +D +LPPKKKTNI TIMYTSGTTGEPKGV++
Sbjct: 180 GNVSTTQKKEAEELGASCFSWEEFLQMGNIDLDLPPKKKTNICTIMYTSGTTGEPKGVII 239

Query: 241 TNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGD 300
            N+A + +VLS+DQ+  +T +V +E+D YFSFLPLAH+YDQI+ET+CI+KG SIGFW+GD
Sbjct: 240 KNEAFMTQVLSIDQILNLTDRVGTEDDVYFSFLPLAHVYDQIMETYCIYKGSSIGFWQGD 299

Query: 301 VRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGM 360
           V +LMEDI  LKPT+F GVPRVYDR+Y  IS+KISSGGAL   LF++AYNYKLG ++KG+
Sbjct: 300 VGFLMEDILALKPTLFCGVPRVYDRVYACISSKISSGGALQSTLFQYAYNYKLGYLEKGL 359

Query: 361 PQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTES 420
           PQ+KAAPL D LVF KI++A GGR++ +LSGAAPLP HVEEFLRVT GA ++QGYGLTES
Sbjct: 360 PQDKAAPLFDKLVFDKIKQALGGRVRLLLSGAAPLPRHVEEFLRVTFGATMSQGYGLTES 419

Query: 421 CSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYY 480
           C GCFT +++VF+M+GT+GVPMTT+EARLESVPEMGYDALSS  RGEICLRGNTLFSGY+
Sbjct: 420 CGGCFTGISNVFSMMGTIGVPMTTIEARLESVPEMGYDALSSEARGEICLRGNTLFSGYH 479

Query: 481 KRPDLTEEVIVDGWFHTGK-NPWQ 503
           K  DLTEEV+VDGWFHTG    WQ
Sbjct: 480 KHQDLTEEVMVDGWFHTGDIGEWQ 503

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575070|ref|XP_003555665.1| PREDICTED: long chain acyl-CoA synthetase 2-like [Glycine max]

 Score =  785 bits (2028), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/504 (73%), Positives = 430/504 (85%), Gaps = 1/504 (0%)

Query: 1   MSETYTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQ 60
           M E YTVKVEE R A DGKPS GPVYR IYAKDGLLE P+  +SPW FF DS KR PNN 
Sbjct: 1   MPEVYTVKVEEGRLATDGKPSVGPVYRSIYAKDGLLEVPSDFKSPWDFFRDSVKRNPNNN 60

Query: 61  MLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120
           MLG R+ ++ K+G Y WLTYQ+VYDAA++ GSA+RSRGVNPGDRCGIYGSNCPEWIIAME
Sbjct: 61  MLGRRQKTESKLGSYTWLTYQDVYDAAMKMGSAIRSRGVNPGDRCGIYGSNCPEWIIAME 120

Query: 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSF 180
           ACNS A++YVPLYDTLG NAVEFIINHAEVSIAFVQE KIPS+LSCL +C   LKTIVSF
Sbjct: 121 ACNSCAVSYVPLYDTLGPNAVEFIINHAEVSIAFVQEKKIPSVLSCLAQCSSNLKTIVSF 180

Query: 181 ANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVL 240
            +VS++QKKEAE  G SCFSW EFLQLG LD +LP KKKT+I TIMYTSGTTG+PKGVV+
Sbjct: 181 GSVSTTQKKEAEGHGASCFSWGEFLQLGCLDWDLPSKKKTDICTIMYTSGTTGDPKGVVI 240

Query: 241 TNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGD 300
            N+A +AEVLSVD + ++T +V  E+D YFSFLPLAH+YDQI+ET+CI KG SIGFW+GD
Sbjct: 241 KNEAFMAEVLSVDHIIMLTDRVAGEDDVYFSFLPLAHVYDQIMETYCISKGSSIGFWQGD 300

Query: 301 VRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGM 360
           VR+L+EDIQELKPT+F GVPRV+DRIY GI +K+SS G L   LF+ AYNYKL  ++KG+
Sbjct: 301 VRFLLEDIQELKPTIFCGVPRVFDRIYAGIKSKVSSAGPLQSTLFQCAYNYKLKYLEKGL 360

Query: 361 PQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTES 420
           PQ+KAAPL D LVF K + A GGR++ +LSGAAPLP HVEEF+RVTSG+ L+QGYGLTES
Sbjct: 361 PQHKAAPLFDRLVFDKTKLALGGRVRILLSGAAPLPRHVEEFMRVTSGSTLSQGYGLTES 420

Query: 421 CSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYY 480
           C+GCFT++ DV++M GTVGVPMTT+EARLESVPEMGYDALS+VPRGEICLRGNTLFSGY+
Sbjct: 421 CAGCFTAIGDVYSMTGTVGVPMTTIEARLESVPEMGYDALSNVPRGEICLRGNTLFSGYH 480

Query: 481 KRPDLTEEVIVDGWFHTGK-NPWQ 503
           KR DLT+EV+VDGWFHTG    WQ
Sbjct: 481 KREDLTKEVMVDGWFHTGDIGEWQ 504

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115485907|ref|NP_001068097.1| Os11g0558300 [Oryza sativa Japonica Group] gi|77551497|gb|ABA94294.1| AMP-binding enzyme family protein, expressed [Oryza sativa Japonica Group] gi|113645319|dbj|BAF28460.1| Os11g0558300 [Oryza sativa Japonica Group] gi|215766667|dbj|BAG98895.1| unnamed protein product [Oryza sativa Japonica Group] gi|222616147|gb|EEE52279.1| hypothetical protein OsJ_34263 [Oryza sativa Japonica Group]

 Score =  746 bits (1927), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/504 (68%), Positives = 421/504 (83%), Gaps = 1/504 (0%)

Query: 1   MSETYTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQ 60
           M ETYTVKV EA PAA GKPS GPVYR IY+KDGL++ P  + SPW FF  + K+ P N+
Sbjct: 1   MEETYTVKVGEATPAAGGKPSAGPVYRSIYSKDGLMKLPEDILSPWDFFSGAVKQYPKNK 60

Query: 61  MLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120
           MLG RKVSDGK G YVWLTY+EVY   I+ GSA+RS  V PG  CGIYGSNCPEW++AM+
Sbjct: 61  MLGQRKVSDGKAGDYVWLTYEEVYQKVIKIGSAIRSLRVKPGGHCGIYGSNCPEWVMAMQ 120

Query: 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSF 180
           ACNSQ I YVPLYDTLGANAVEFI++HAE+SIAFVQE+KI S+LS + RC  ++K IVSF
Sbjct: 121 ACNSQGICYVPLYDTLGANAVEFIMDHAEISIAFVQESKIQSVLSVVKRCRAHIKAIVSF 180

Query: 181 ANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVL 240
            +V+S  K+EAE+LGVSCFSWEEF  +G  + ELP K+K +I TIMYTSGTTG+PKGV++
Sbjct: 181 GDVTSELKREAEQLGVSCFSWEEFSSMGKQNYELPKKQKDDICTIMYTSGTTGDPKGVII 240

Query: 241 TNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGD 300
           TN+A++A V++ + +  VT KV +E+D+YFS+LPLAHI+DQ+I  +CI KG SIGFW+ D
Sbjct: 241 TNRALIAGVMTTEHLLKVTDKVVAEDDSYFSYLPLAHIFDQVIGNYCISKGASIGFWQAD 300

Query: 301 VRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGM 360
           +RYLMED+Q +KPT+F GVPRVYDRIYTGI+ KI SGG ++K LF++AYNYKLGN++KG+
Sbjct: 301 IRYLMEDVQMMKPTVFCGVPRVYDRIYTGINQKIQSGGMIAKSLFQYAYNYKLGNLRKGL 360

Query: 361 PQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTES 420
            Q++A+P  D +VFSKI+E  GGR++ +LSGAAPLP HVEEF+RVTS + L QGYGLTES
Sbjct: 361 KQDEASPFFDKIVFSKIKEGLGGRIRLLLSGAAPLPRHVEEFMRVTSCSVLVQGYGLTES 420

Query: 421 CSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYY 480
           CSGCFTS+A+VF+MIG+VG P+TT+EARLES+PEMGYDALS+VPRGEICLRG+TLFSGYY
Sbjct: 421 CSGCFTSIANVFSMIGSVGPPVTTIEARLESIPEMGYDALSNVPRGEICLRGHTLFSGYY 480

Query: 481 KRPDLTEEVIVDGWFHTGK-NPWQ 503
           KRPDLTEEV  DGWFHTG    WQ
Sbjct: 481 KRPDLTEEVFSDGWFHTGDIGEWQ 504

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	510
TAIR|locus:2010177	665	LACS2 "long-chain acyl-CoA syn	0.970	0.744	0.662	6.6e-184
TAIR|locus:2014265	665	LACS3 "long-chain acyl-CoA syn	0.978	0.750	0.555	3.1e-154
TAIR|locus:2138141	666	LACS4 "long-chain acyl-CoA syn	0.978	0.749	0.552	2.5e-152
TAIR|locus:2136148	666	AT4G11030 [Arabidopsis thalian	0.978	0.749	0.550	5.2e-152
TAIR|locus:2065195	660	LACS1 "AT2G47240" [Arabidopsis	0.972	0.751	0.478	2e-127
TAIR|locus:2083013	701	LACS6 "AT3G05970" [Arabidopsis	0.835	0.607	0.426	1.2e-83
TAIR|locus:2143661	700	LACS7 "AT5G27600" [Arabidopsis	0.858	0.625	0.402	1.2e-81
WB|WBGene00022037	719	acs-13 [Caenorhabditis elegans	0.847	0.600	0.392	1e-77
DICTYBASE|DDB_G0269474	673	fcsB "fatty acyl-CoA synthetas	0.925	0.701	0.348	3.1e-76
DICTYBASE|DDB_G0269242	667	fcsA "long-chain-fatty-acid-Co	0.837	0.640	0.370	5.1e-74

TAIR|locus:2010177 LACS2 "long-chain acyl-CoA synthetase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1784 (633.1 bits), Expect = 6.6e-184, P = 6.6e-184
 Identities = 330/498 (66%), Positives = 395/498 (79%)

Query:     9 VEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVS 68
             VEE RPA    PS GPVYRC YAKDGLL+ P  ++SPWQFF ++ K+ PN QMLG R  +
Sbjct:    11 VEEGRPATAEHPSAGPVYRCKYAKDGLLDLPTDIDSPWQFFSEAVKKYPNEQMLGQRVTT 70

Query:    69 DGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAIT 128
             D KVGPY W+TY+E +DAAIR GSA+RSRGV+PG  CGIYG+NCPEWIIAMEAC SQ IT
Sbjct:    71 DSKVGPYTWITYKEAHDAAIRIGSAIRSRGVDPGHCCGIYGANCPEWIIAMEACMSQGIT 130

Query:   129 YVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQK 188
             YVPLYD+LG NAVEFIINHAEVS+ FVQE  + SILSC   C   LKTIVSF  VSS+QK
Sbjct:   131 YVPLYDSLGVNAVEFIINHAEVSLVFVQEKTVSSILSCQKGCSSNLKTIVSFGEVSSTQK 190

Query:   189 KEAEELGVSCFSWEEFLQLGTLD-CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVA 247
             +EA+   VS FSW EF  +G LD   LP K+KT+I TIMYTSGTTGEPKGV+L N AI  
Sbjct:   191 EEAKNQCVSLFSWNEFSLMGNLDEANLPRKRKTDICTIMYTSGTTGEPKGVILNNAAISV 250

Query:   248 EVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMED 307
             +VLS+D+M  VT + C   D +FS+LPLAH YDQ++E + + +G S+G+WRGD+RYLM+D
Sbjct:   251 QVLSIDKMLEVTDRSCDTSDVFFSYLPLAHCYDQVMEIYFLSRGSSVGYWRGDIRYLMDD 310

Query:   308 IQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAP 367
             +Q LKPT+F GVPRVYD++Y GI  KIS+ G + KKLF+FAYNYKLGNM+KG  Q +A+P
Sbjct:   311 VQALKPTVFCGVPRVYDKLYAGIMQKISASGLIRKKLFDFAYNYKLGNMRKGFSQEEASP 370

Query:   368 LLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTS 427
              LD L+F KI+EA GGR   +LSGAAPLP HVEEFLR+   + L+QGYGLTESC G FT+
Sbjct:   371 RLDRLMFDKIKEALGGRAHMLLSGAAPLPRHVEEFLRIIPASNLSQGYGLTESCGGSFTT 430

Query:   428 LADVFNMIGTVGVPMTTVEARLESVPEMGYDALSS-VPRGEICLRGNTLFSGYYKRPDLT 486
             LA VF+M+GTVGVPM TVEARL SVPEMGYDA S+ VPRGEICLRGN++FSGY+KR DLT
Sbjct:   431 LAGVFSMVGTVGVPMPTVEARLVSVPEMGYDAFSADVPRGEICLRGNSMFSGYHKRQDLT 490

Query:   487 EEVIVDGWFHTGK-NPWQ 503
             ++V++DGWFHTG    WQ
Sbjct:   491 DQVLIDGWFHTGDIGEWQ 508

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0001676 "long-chain fatty acid metabolic process" evidence=RCA;IDA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0010143 "cutin biosynthetic process" evidence=IMP

GO:0050832 "defense response to fungus" evidence=IMP

GO:0010311 "lateral root formation" evidence=IMP

GO:0010025 "wax biosynthetic process" evidence=IGI

GO:0031957 "very long-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0002213 "defense response to insect" evidence=RCA

GO:0006633 "fatty acid biosynthetic process" evidence=RCA;TAS

TAIR|locus:2014265 LACS3 "long-chain acyl-CoA synthetase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1504 (534.5 bits), Expect = 3.1e-154, P = 3.1e-154
 Identities = 279/502 (55%), Positives = 367/502 (73%)

Query:     5 YTVKVEEARPAADG-KPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLG 63
             Y V+VE+ +   DG  PS GPVYR IYAKDG  E P  L S W  F  S ++ PNN MLG
Sbjct:     6 YIVEVEKGKQGVDGGSPSVGPVYRSIYAKDGFPEPPDDLVSAWDIFRLSVEKSPNNPMLG 65

Query:    64 GRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACN 123
              R++ DGK G YVW TY+EV++  I+ G+++R+ GV  GD+CGIYG+N PEWII+MEACN
Sbjct:    66 RREIVDGKAGKYVWQTYKEVHNVVIKLGNSIRTIGVGKGDKCGIYGANSPEWIISMEACN 125

Query:   124 SQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANV 183
             +  +  VPLYDTLGA A+EFII HAEVS+AF +ENKI  +L   P+   YLK IVSF  V
Sbjct:   126 AHGLYCVPLYDTLGAGAIEFIICHAEVSLAFAEENKISELLKTAPKSTKYLKYIVSFGEV 185

Query:   184 SSSQKKEAEELGVSCFSWEEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTN 242
             +++Q+ EAE   ++ +SW++FL+LG     ELP K+++++ TIMYTSGTTG+PKGV+LTN
Sbjct:   186 TNNQRVEAERHRLTIYSWDQFLKLGEGKHYELPEKRRSDVCTIMYTSGTTGDPKGVLLTN 245

Query:   243 QAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVR 302
             ++I+  +  V ++     +  + +D Y S+LPLAHI+D++IE  CI++  SIGFWRGDV+
Sbjct:   246 ESIIHLLEGVKKLLKTIDEELTSKDVYLSYLPLAHIFDRVIEELCIYEAASIGFWRGDVK 305

Query:   303 YLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQ 362
              L+EDI  LKPT+F  VPRV +RIYTG+  K+S GG + KKLF FA+ YK  NM+KG P 
Sbjct:   306 ILIEDIAALKPTVFCAVPRVLERIYTGLQQKLSDGGFVKKKLFNFAFKYKHKNMEKGQPH 365

Query:   363 NKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCS 422
              +A+P+ D +VF K++E  GG ++ +LSGAAPL  H+E FLRV + A + QGYGLTESC 
Sbjct:   366 EQASPIADKIVFKKVKEGLGGNVRLILSGAAPLAAHIESFLRVVACAHVLQGYGLTESCG 425

Query:   423 GCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKR 482
             G F S+ +  +M+GTVG P+  V+ RLESVPEMGYDAL+S PRGEIC+RG TLFSGYYKR
Sbjct:   426 GTFVSIPNELSMLGTVGPPVPNVDIRLESVPEMGYDALASNPRGEICIRGKTLFSGYYKR 485

Query:   483 PDLTEEVIVDGWFHTGK-NPWQ 503
              DLT+EV +DGW HTG    WQ
Sbjct:   486 EDLTQEVFIDGWLHTGDVGEWQ 507

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0001676 "long-chain fatty acid metabolic process" evidence=RCA;IDA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0002213 "defense response to insect" evidence=RCA

GO:0006633 "fatty acid biosynthetic process" evidence=RCA;TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2138141 LACS4 "long-chain acyl-CoA synthetase 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 1486 (528.2 bits), Expect = 2.5e-152, P = 2.5e-152
 Identities = 277/501 (55%), Positives = 363/501 (72%)

Query:     5 YTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGG 64
             Y  +VEE +  +DG+PS GPVYR I+AKDG  +   G++S W  F  S ++ PNN MLG 
Sbjct:     7 YIFQVEEGKEGSDGRPSVGPVYRSIFAKDGFPDPIEGMDSCWDVFRMSVEKYPNNPMLGR 66

Query:    65 RKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNS 124
             R++ DGK G YVW TYQEVYD  ++ G+++RS GV    +CGIYG+N PEWII+MEACN+
Sbjct:    67 REIVDGKPGKYVWQTYQEVYDIVMKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEACNA 126

Query:   125 QAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVS 184
               +  VPLYDTLGA+AVEFII+H+EVSI FV+E KI  +    P    Y+KT+VSF  VS
Sbjct:   127 HGLYCVPLYDTLGADAVEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVSFGGVS 186

Query:   185 SSQKKEAEELGVSCFSWEEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQ 243
               QK+EAE  G+  ++W+EFL+LG     +LP KKK++I TIMYTSGTTG+PKGV+++N+
Sbjct:   187 REQKEEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMISNE 246

Query:   244 AIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRY 303
             +IV  +  V ++     +  + +D Y S+LPLAHI+D++IE   I  G +IGFWRGDV+ 
Sbjct:   247 SIVTLIAGVIRLLKSANEALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGDVKL 306

Query:   304 LMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQN 363
             L+ED+ ELKPT+F  VPRV DR+Y+G+  K+S GG L K +F+ A++YK G MKKG    
Sbjct:   307 LIEDLAELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFIFDSAFSYKFGYMKKGQSHV 366

Query:   364 KAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSG 423
             +A+PL D LVFSK+++  GG ++ +LSGAAPL  HVE FLRV +   + QGYGLTESC+G
Sbjct:   367 EASPLFDKLVFSKVKQGLGGNVRIILSGAAPLASHVESFLRVVACCHVLQGYGLTESCAG 426

Query:   424 CFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRP 483
              F SL D   M+GTVG P+  V+ RLESVPEM YDAL+S  RGEIC+RG TLFSGYYKR 
Sbjct:   427 TFVSLPDELGMLGTVGPPVPNVDIRLESVPEMEYDALASTARGEICIRGKTLFSGYYKRE 486

Query:   484 DLTEEVIVDGWFHTGK-NPWQ 503
             DLT+EV++DGW HTG    WQ
Sbjct:   487 DLTKEVLIDGWLHTGDVGEWQ 507

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0001676 "long-chain fatty acid metabolic process" evidence=RCA;IDA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0002213 "defense response to insect" evidence=RCA

GO:0006633 "fatty acid biosynthetic process" evidence=RCA;TAS

GO:0009611 "response to wounding" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

TAIR|locus:2136148 AT4G11030 [Arabidopsis thaliana (taxid:3702)]

 Score = 1483 (527.1 bits), Expect = 5.2e-152, P = 5.2e-152
 Identities = 276/501 (55%), Positives = 357/501 (71%)

Query:     5 YTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGG 64
             +  +VE A+ A DG PS GPVYR  +A++G      G++S W  F  + ++ PNN+MLG 
Sbjct:     7 FIFEVEAAKEATDGNPSVGPVYRSTFAQNGFPNPIDGIQSCWDIFRTAVEKYPNNRMLGR 66

Query:    65 RKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNS 124
             R++S+GK G YVW TY+EVYD  I+ G+++RS G+  G++CGIYG NC EWII+MEACN+
Sbjct:    67 REISNGKAGKYVWKTYKEVYDIVIKLGNSLRSCGIKEGEKCGIYGINCCEWIISMEACNA 126

Query:   125 QAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVS 184
               +  VPLYDTLGA AVEFII+HAEVSIAFV+E KIP +    P    Y+KT+VSF  V 
Sbjct:   127 HGLYCVPLYDTLGAGAVEFIISHAEVSIAFVEEKKIPELFKTCPNSTKYMKTVVSFGGVK 186

Query:   185 SSQKKEAEELGVSCFSWEEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQ 243
               QK+EAE+LG+   SW+EFL+LG     ELP KK ++I TIMYTSGTTG+PKGV+++N+
Sbjct:   187 PEQKEEAEKLGLVIHSWDEFLKLGEGKQYELPIKKPSDICTIMYTSGTTGDPKGVMISNE 246

Query:   244 AIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRY 303
             +IV     V           SE+D Y S+LPLAH++D+ IE   I  G SIGFWRGDV+ 
Sbjct:   247 SIVTITTGVMHFLGNVNASLSEKDVYISYLPLAHVFDRAIEECIIQVGGSIGFWRGDVKL 306

Query:   304 LMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQN 363
             L+ED+ ELKP++F  VPRV DR+YTG+  K+S GG   KK+F+ A++YK GNMKKG    
Sbjct:   307 LIEDLGELKPSIFCAVPRVLDRVYTGLQQKLSGGGFFKKKVFDVAFSYKFGNMKKGQSHV 366

Query:   364 KAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSG 423
              A+P  D LVF+K+++  GG ++ +LSGAAPL  H+E FLRV +   + QGYGLTESC+G
Sbjct:   367 AASPFCDKLVFNKVKQGLGGNVRIILSGAAPLASHIESFLRVVACCNVLQGYGLTESCAG 426

Query:   424 CFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRP 483
              F +  D  +M+GTVG P+  V+ RLESVPEM YDAL S PRGEIC+RG TLFSGYYKR 
Sbjct:   427 TFATFPDELDMLGTVGPPVPNVDIRLESVPEMNYDALGSTPRGEICIRGKTLFSGYYKRE 486

Query:   484 DLTEEVIVDGWFHTGK-NPWQ 503
             DLT+EV +DGW HTG    WQ
Sbjct:   487 DLTKEVFIDGWLHTGDVGEWQ 507

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0001676 "long-chain fatty acid metabolic process" evidence=RCA;IDA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0002213 "defense response to insect" evidence=RCA

GO:0006633 "fatty acid biosynthetic process" evidence=RCA;TAS

TAIR|locus:2065195 LACS1 "AT2G47240" [Arabidopsis thaliana (taxid:3702)]

 Score = 1251 (445.4 bits), Expect = 2.0e-127, P = 2.0e-127
 Identities = 238/497 (47%), Positives = 320/497 (64%)

Query:     3 ETYTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQML 62
             +++  KVEE     DGKPS GPVYR + ++ G     + + + W  F  S ++ P+N ML
Sbjct:     2 KSFAAKVEEGVKGIDGKPSVGPVYRNLLSEKGFPPIDSEITTAWDIFSKSVEKFPDNNML 61

Query:    63 GGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC 122
             G R++ D KVGPY+W TY+EVY+  ++ GSA+R+ G  PG R GIYG NCP+WIIAMEAC
Sbjct:    62 GWRRIVDEKVGPYMWKTYKEVYEEVLQIGSALRAAGAEPGSRVGIYGVNCPQWIIAMEAC 121

Query:   123 NSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFAN 182
              +  +  VPLYDTLG+ AV++I+ HAE+   FVQ+ KI  +L    +C   LK IVSF N
Sbjct:   122 AAHTLICVPLYDTLGSGAVDYIVEHAEIDFVFVQDTKIKGLLEPDCKCAKRLKAIVSFTN 181

Query:   183 VSSSQKKEAEELGVSCFSWEEFLQLGTLDCE-LPPKKKTNISTIMYTSGTTGEPKGVVLT 241
             VS     +A E+GV  +SW +FL +G    E   P K  NI TIMYTSGT+G+PKGVVLT
Sbjct:   182 VSDELSHKASEIGVKTYSWIDFLHMGREKPEDTNPPKAFNICTIMYTSGTSGDPKGVVLT 241

Query:   242 NQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDV 301
             +QA+   V+ +D          + +D Y SFLPLAHI D++ E +   KG S+G++ G++
Sbjct:   242 HQAVATFVVGMDLYMDQFEDKMTHDDVYLSFLPLAHILDRMNEEYFFRKGASVGYYHGNL 301

Query:   302 RYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMP 361
               L +DIQELKPT  +GVPRV++RI+ GI   +       + +F   Y +KL  + +G  
Sbjct:   302 NVLRDDIQELKPTYLAGVPRVFERIHEGIQKALQELNPRRRFIFNALYKHKLAWLNRGYS 361

Query:   362 QNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESC 421
              +KA+P+ D + F KIR+  GGR++ ++SG APL   +EEFLRVT    + QGYGLTE+ 
Sbjct:   362 HSKASPMADFIAFRKIRDKLGGRIRLLVSGGAPLSPEIEEFLRVTCCCFVVQGYGLTETL 421

Query:   422 SGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYK 481
              G      D   M+GTVG+P    E RLE V EMGYD L   P GEIC+RG  +FSGYYK
Sbjct:   422 GGTALGFPDEMCMLGTVGIPAVYNEIRLEEVSEMGYDPLGENPAGEICIRGQCMFSGYYK 481

Query:   482 RPDLTEEVIVDGWFHTG 498
              P+LTEEV+ DGWFHTG
Sbjct:   482 NPELTEEVMKDGWFHTG 498

GO:0001676 "long-chain fatty acid metabolic process" evidence=ISS;IDA

GO:0003824 "catalytic activity" evidence=IEA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0006633 "fatty acid biosynthetic process" evidence=ISS

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0010025 "wax biosynthetic process" evidence=IMP

GO:0010143 "cutin biosynthetic process" evidence=IMP

GO:0031957 "very long-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

TAIR|locus:2083013 LACS6 "AT3G05970" [Arabidopsis thaliana (taxid:3702)]

 Score = 838 (300.0 bits), Expect = 1.2e-83, P = 1.2e-83
 Identities = 188/441 (42%), Positives = 257/441 (58%)

Query:    62 LGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121
             LG R   DG VG Y W+TY E   A    GS +   G+  G   GIY  N PEW+I   A
Sbjct:   103 LGTRVRVDGTVGDYKWMTYGEAGTARTALGSGLVHHGIPMGSSVGIYFINRPEWLIVDHA 162

Query:   122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFA 181
             C+S +   VPLYDTLG +AV+FI+NHA V   F     + S+LSCL      ++ +V   
Sbjct:   163 CSSYSYVSVPLYDTLGPDAVKFIVNHATVQAIFCVAETLNSLLSCLSEMPS-VRLVVVVG 221

Query:   182 NVSSSQKKEAEELGVSCFSWEEFLQLGTLDCE--LPPKKKTNISTIMYTSGTTGEPKGVV 239
              +  S        GV   S+   L  G  + +   PPK   +++TI YTSGTTG PKGVV
Sbjct:   222 GLIESLPSLPSSSGVKVVSYSVLLNQGRSNPQRFFPPKPD-DVATICYTSGTTGTPKGVV 280

Query:   240 LTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG 299
             LT+  ++A V      F V  K  S  D Y S+LPLAHIY++  +   ++ G ++GF++G
Sbjct:   281 LTHANLIANVAG--SSFSV--KFFSS-DVYISYLPLAHIYERANQILTVYFGVAVGFYQG 335

Query:   300 DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKG 359
             D   L++D+  L+PT+FS VPR+Y+RIY GI N + + G L ++LF  AYN K   +  G
Sbjct:   336 DNMKLLDDLAALRPTVFSSVPRLYNRIYAGIINAVKTSGGLKERLFNAAYNAKKQALLNG 395

Query:   360 MPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTE 419
                  A+P+ D LVF+KI++  GGR++ M SGA+PL   V EFL+V  G  +T+GYG+TE
Sbjct:   396 ---KSASPIWDRLVFNKIKDRLGGRVRFMTSGASPLSPEVMEFLKVCFGGRVTEGYGMTE 452

Query:   420 SCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSV-PRGEICLRGNTLFSG 478
             + S   + + +  N+ G VG P    E +L  VPEM Y +     PRGEIC+RG  +F+G
Sbjct:   453 T-SCVISGMDEGDNLTGHVGSPNPACEVKLVDVPEMNYTSADQPHPRGEICVRGPIIFTG 511

Query:   479 YYKRPDLTEEVI-VDGWFHTG 498
             YYK    T+EVI  DGW HTG
Sbjct:   512 YYKDEIQTKEVIDEDGWLHTG 532

GO:0001676 "long-chain fatty acid metabolic process" evidence=RCA;IDA;TAS

GO:0003824 "catalytic activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IDA;TAS

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0005777 "peroxisome" evidence=IDA

GO:0010193 "response to ozone" evidence=IEP

GO:0016020 "membrane" evidence=IDA

GO:0002213 "defense response to insect" evidence=RCA

GO:0006633 "fatty acid biosynthetic process" evidence=RCA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

TAIR|locus:2143661 LACS7 "AT5G27600" [Arabidopsis thaliana (taxid:3702)]

 Score = 819 (293.4 bits), Expect = 1.2e-81, P = 1.2e-81
 Identities = 183/455 (40%), Positives = 259/455 (56%)

Query:    49 FCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIY 108
             F  + +    N+ LG R  SDG +G Y W+TY E        GS +   GVN GD  G+Y
Sbjct:    90 FVHAVETYAENKYLGTRVRSDGTIGEYSWMTYGEAASERQAIGSGLLFHGVNQGDCVGLY 149

Query:   109 GSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLP 168
               N PEW++   AC + +   VPLYDTLG +AV+F++NHA +   F     +  +LS L 
Sbjct:   150 FINRPEWLVVDHACAAYSFVSVPLYDTLGPDAVKFVVNHANLQAIFCVPQTLNILLSFLA 209

Query:   169 RCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCE-LPPKKKTNISTIMY 227
                  ++ IV                GV+  S+++ L  G        P K  +I+TI Y
Sbjct:   210 EIPS-IRLIVVVGGADEHLPSLPRGTGVTIVSYQKLLSQGRSSLHPFSPPKPEDIATICY 268

Query:   228 TSGTTGEPKGVVLTNQAIVAEVL--SVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIET 285
             TSGTTG PKGVVLT+  ++A V   SV+  F  +       D Y S+LPLAHIY++  + 
Sbjct:   269 TSGTTGTPKGVVLTHGNLIANVAGSSVEAEFFPS-------DVYISYLPLAHIYERANQI 321

Query:   286 HCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLF 345
               ++ G ++GF++GDV  LM+D   L+PT+F  VPR+Y+RIY GI++ + S G + K+LF
Sbjct:   322 MGVYGGVAVGFYQGDVFKLMDDFAVLRPTIFCSVPRLYNRIYDGITSAVKSSGVVKKRLF 381

Query:   346 EFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRV 405
             E AYN K   +  G  +  +A   D LVF+KI+E  GGR++ M SGA+PL   V +FLR+
Sbjct:   382 EIAYNSKKQAIING--RTPSA-FWDKLVFNKIKEKLGGRVRFMGSGASPLSPDVMDFLRI 438

Query:   406 TSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSS-VP 464
               G  + +GYG+TE+ S   +++ D  N+ G VG P    E +L  VPEM Y +     P
Sbjct:   439 CFGCSVREGYGMTET-SCVISAMDDGDNLSGHVGSPNPACEVKLVDVPEMNYTSDDQPYP 497

Query:   465 RGEICLRGNTLFSGYYKRPDLTEEVIV-DGWFHTG 498
             RGEIC+RG  +F GYYK  + T E++  DGW HTG
Sbjct:   498 RGEICVRGPIIFKGYYKDEEQTREILDGDGWLHTG 532

GO:0001676 "long-chain fatty acid metabolic process" evidence=IDA;TAS

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IDA;TAS

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0005777 "peroxisome" evidence=IDA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009651 "response to salt stress" evidence=IEP

GO:0010193 "response to ozone" evidence=IEP

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0007031 "peroxisome organization" evidence=RCA

GO:0009610 "response to symbiotic fungus" evidence=RCA

WB|WBGene00022037 acs-13 [Caenorhabditis elegans (taxid:6239)]

 Score = 782 (280.3 bits), Expect = 1.0e-77, P = 1.0e-77
 Identities = 178/454 (39%), Positives = 265/454 (58%)

Query:    55 RIPNN-QMLGGR-KVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPG--DRCGIYGS 110
             R+ NN  MLG R K SDG + PYVW +Y  + + A     A R  GV  G  +  GIY  
Sbjct:   120 RLSNNGPMLGRRVKQSDGSI-PYVWESYNTILERADNVSVAFRELGVPTGNAENIGIYSK 178

Query:   111 NCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQE-NKIPSILSCLPR 169
             N  EWII   A  + +   VP+Y+TLG+ A  FI+N AE+ I    + +K   +L    +
Sbjct:   179 NRAEWIITEFATYNYSNVIVPIYETLGSEASIFILNQAEIKIVVCDDISKATGLLKFKEQ 238

Query:   170 CCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLG----TLDCELPPKKKTNISTI 225
             C   L T+V    V+   K  A  LGV   ++E+  ++G    T    +PP  + +++TI
Sbjct:   239 CPS-LSTLVVMEPVTDELKTTASSLGVEVLTFEDLEKIGKNAKTRPAHIPPTPE-DLATI 296

Query:   226 MYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIET 285
              YTSGTTG PKGV+LT+  ++A+ + +D  F  +G   +  D+  SFLPLAH+ +++IE+
Sbjct:   297 CYTSGTTGTPKGVMLTHANVIADGVCMD-FFKHSGIAAT--DSMISFLPLAHMLERVIES 353

Query:   286 HCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLF 345
              C   G  +GF+RGD+R L EDI+ELKPT+   VPRV +R+Y  + ++++    L K LF
Sbjct:   354 VCFCVGAKVGFYRGDIRVLAEDIKELKPTVVPVVPRVLNRLYDKVMSEVNKS-TLKKMLF 412

Query:   346 EFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRV 405
             +FA +YK  +M     +N      D+LVF KIRE FGGR++ M++G+APL  +V  F+R 
Sbjct:   413 DFAISYKARDMANFNIRNDG--FFDNLVFKKIREGFGGRVRLMITGSAPLSTNVLTFVRA 470

Query:   406 TSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPR 465
               G  + +GYG TE  + C  S+ +  ++ G VG+ + + + +L  VPE+ Y A      
Sbjct:   471 AMGCVVVEGYGQTECVAACTVSM-EGDSLAGHVGMVIPSCQIKLVDVPELNYYAKDQA-- 527

Query:   466 GEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTG 498
             GE+C++G+ +F GYYK    T+E I  DGW HTG
Sbjct:   528 GEVCVKGHIIFKGYYKNEQQTKETIDEDGWLHTG 561

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

DICTYBASE|DDB_G0269474 fcsB "fatty acyl-CoA synthetase" [Dictyostelium discoideum (taxid:44689)]

 Score = 768 (275.4 bits), Expect = 3.1e-76, P = 3.1e-76
 Identities = 170/488 (34%), Positives = 267/488 (54%)

Query:    19 KP-SGGPVYRCIYAKDGLLE--SPAGLESPWQFFCDSAKRIPNNQMLGGRKV-SDGKVGP 74
             KP +GG + R     D L+       + + +     S K+    +  G RK  S+G +G 
Sbjct:    36 KPENGGRIRRNSACADHLISFLEDDEIYTLYDSLVKSCKKYGERKCFGERKKDSNGNLGK 95

Query:    75 YVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYD 134
             + W++Y    +        +   G+ P  + GI+  N  EW+I   A   Q+   V  Y+
Sbjct:    96 FEWISYNTYLERCEYIQQGLCELGLKPKSKVGIFSKNRLEWLIVHSASFIQSYCVVSFYE 155

Query:   135 TLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEEL 194
             TLG  ++ ++  HAE+ +AF     +   L  + +    LKTI+ F ++       A+EL
Sbjct:   156 TLGVESLSYVTEHAEIGLAFCSAETLQKTLD-IAKGVKVLKTIICFDSIDKEHYNIAKEL 214

Query:   195 GVSCFSWEEFLQLGT----LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVL 250
             GV+ ++++E ++ G          PP   T +STIMYTSGTTG PKGV++T++ + + V 
Sbjct:   215 GVTLYTYDEIMKKGKEANGKHKHTPPTPDT-LSTIMYTSGTTGPPKGVMITHKNLTSVVC 273

Query:   251 SVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQE 310
             +V   F+   KV  + D ++S+LP AH+ ++++     H G +IG + GD+  ++ +++ 
Sbjct:   274 AVSD-FI---KVY-DTDVHYSYLPYAHVLERVVILAAFHFGAAIGIFSGDISNILVEVKL 328

Query:   311 LKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLD 370
             L PT+F GVPRV++RI T +  +IS   AL + LF  AYN K  +++ G        +LD
Sbjct:   329 LSPTLFIGVPRVFERIKTNVFKEISKKPALLRTLFNGAYNLKYLSIQHGFKLPIIEKVLD 388

Query:   371 SLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLAD 430
              + FSKI++A GG+++ +LSG+APL    E FLRV     + QGYG +E C G      D
Sbjct:   389 LVFFSKIKQALGGKVRVILSGSAPLSFDTEVFLRVVMCCCVLQGYGASEGCGGDACKRLD 448

Query:   431 VFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI 490
                 +GT+G P  + E +L  VPE+GYD+   V  GE+CLRG ++ SGYYK  + T E  
Sbjct:   449 D-ESVGTIGPPFASNEIKLVDVPELGYDSNGEVQTGEVCLRGPSISSGYYKDEEKTREEF 507

Query:   491 VDGWFHTG 498
              DGWFHTG
Sbjct:   508 KDGWFHTG 515

GO:0006631 "fatty acid metabolic process" evidence=IEA;ISS

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IEA;ISS

GO:0001676 "long-chain fatty acid metabolic process" evidence=IEA;ISS

GO:0008152 "metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

DICTYBASE|DDB_G0269242 fcsA "long-chain-fatty-acid-CoA ligase" [Dictyostelium discoideum (taxid:44689)]

 Score = 747 (268.0 bits), Expect = 5.1e-74, P = 5.1e-74
 Identities = 166/448 (37%), Positives = 263/448 (58%)

Query:    58 NNQMLGGRKV-SDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWI 116
             ++  LG R++ +DGK G Y W++Y++    A   GSA+   G+N GDR GI+  N PEW+
Sbjct:    67 DSNFLGIRELLADGKRGDYKWISYKQACIRANNIGSALVQLGLNKGDRIGIFSINRPEWV 126

Query:   117 IAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKT 176
             ++  A  + ++  V LY TLGANA+E+++NH+E+S+   +   +  ILS +P   +  KT
Sbjct:   127 LSDMAAMNHSLVPVALYATLGANAIEYVVNHSEISVLLCEGKNVEKILS-MPGTTI--KT 183

Query:   177 IVSFANV-SSSQKKEAEELGVSCFSWEEFLQLGTLDC---ELPPKKKTNISTIMYTSGTT 232
             IVS+  +  ++  K  +   V  +   +F +LG  +    E+P  +  ++ T++YTSG+T
Sbjct:   184 IVSYDPLPQATLDKFKDNENVKLYLLSDFEKLGEQNPAQHEVPSPE--DLCTLLYTSGST 241

Query:   233 GEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGC 292
             G PKGV+LT+  +V+EV   +  F   G +   ED + S+LPLAH +++ + +   + G 
Sbjct:   242 GNPKGVMLTHTNMVSEVAGAN--FSPAGVI--PEDVHMSYLPLAHSFERAVVSLMCYVGG 297

Query:   293 SIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYK 352
              IGF+ G +  L  DIQ L+PT   G PRV+ R++  +   +++   L K LF +  N K
Sbjct:   298 QIGFFSGLIPELFNDIQVLRPTFLCGAPRVWQRLHDKLWFTVNNDSWLKKFLFNWGLNSK 357

Query:   353 LGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLT 412
                ++ G       P+ D LVFSK ++  GGR++ +LSG+APL   + EFLR     P+ 
Sbjct:   358 QSALRLG----STTPIWDKLVFSKTKDRLGGRVKFILSGSAPLDPKLAEFLRACFCCPVV 413

Query:   413 QGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSS-VPRGEICLR 471
              GYGL+E+  G   +  +  N +G VG P++  E +L  VPEM Y +     PRGE+C+R
Sbjct:   414 SGYGLSENVGGASVAYPED-NNVGHVGPPLSACEMKLIDVPEMNYFSTDKPCPRGEVCIR 472

Query:   472 GNTLFSGYYKRPDLTEEVIV-DGWFHTG 498
             G  +F GY+K P+ T+E +  DGWFHTG
Sbjct:   473 GFNVFKGYFKDPEKTKEDLKEDGWFHTG 500

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0005769 "early endosome" evidence=IDA

GO:0010009 "external side of endosome membrane" evidence=IDA

GO:0006631 "fatty acid metabolic process" evidence=IEA;IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IEA;TAS

GO:0001676 "long-chain fatty acid metabolic process" evidence=IEA;TAS

GO:0008152 "metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0010008 "endosome membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9XIA9	LACS2_ARATH	6, ., 2, ., 1, ., 3	0.6626	0.9705	0.7443	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.2.1	0.921
3rd Layer	6.2.1.3	0.914

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	510
PLN02861	660	PLN02861, PLN02861, long-chain-fatty-acid-CoA liga	0.0
PLN02614	666	PLN02614, PLN02614, long-chain acyl-CoA synthetase	0.0
PLN02430	660	PLN02430, PLN02430, long-chain-fatty-acid-CoA liga	0.0
cd05927	539	cd05927, LC-FACS_euk, Eukaryotic long-chain fatty	0.0
PLN02736	651	PLN02736, PLN02736, long-chain acyl-CoA synthetase	1e-139
COG1022	613	COG1022, FAA1, Long-chain acyl-CoA synthetases (AM	1e-112
PLN02387	696	PLN02387, PLN02387, long-chain-fatty-acid-CoA liga	6e-82
PTZ00216	700	PTZ00216, PTZ00216, acyl-CoA synthetase; Provision	5e-81
pfam00501	412	pfam00501, AMP-binding, AMP-binding enzyme	3e-75
cd05907	456	cd05907, VL_LC_FACS_like, Long-chain fatty acid Co	1e-73
cd05932	504	cd05932, LC_FACS_bac, Bacterial long-chain fatty a	2e-73
cd05933	594	cd05933, ACSBG_like, Bubblegum-like very long-chai	1e-59
COG0318	534	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/	4e-59
cd05936	468	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain	1e-54
cd05911	487	cd05911, Firefly_Luc_like, Firefly luciferase of l	1e-48
PRK06187	521	PRK06187, PRK06187, long-chain-fatty-acid--CoA lig	5e-48
PRK07656	513	PRK07656, PRK07656, long-chain-fatty-acid--CoA lig	3e-47
PTZ00342	746	PTZ00342, PTZ00342, acyl-CoA synthetase; Provision	9e-43
cd05917	347	cd05917, FACL_like_2, Uncharacterized subfamily of	3e-35
cd05929	342	cd05929, BACL_like, Bacterial Bile acid CoA ligase	2e-34
PRK05605	573	PRK05605, PRK05605, long-chain-fatty-acid--CoA lig	6e-33
cd05904	504	cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)	3e-32
cd04433	338	cd04433, AFD_class_I, Adenylate forming domain, Cl	7e-32
COG0365	528	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat	2e-31
cd05941	430	cd05941, MCS, Malonyl-CoA synthetase (MCS)	3e-31
cd12118	520	cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt	3e-31
cd05912	407	cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase	2e-29
PRK06710	563	PRK06710, PRK06710, long-chain-fatty-acid--CoA lig	2e-28
TIGR01923	436	TIGR01923, menE, O-succinylbenzoate-CoA ligase	4e-28
PRK06839	496	PRK06839, PRK06839, acyl-CoA synthetase; Validated	1e-26
PRK03640	483	PRK03640, PRK03640, O-succinylbenzoic acid--CoA li	3e-26
PRK07787	471	PRK07787, PRK07787, acyl-CoA synthetase; Validated	9e-26
PRK09088	488	PRK09088, PRK09088, acyl-CoA synthetase; Validated	3e-25
cd05926	345	cd05926, FACL_fum10p_like, Subfamily of fatty acid	1e-24
cd05909	489	cd05909, AAS_C, C-terminal domain of the acyl-acyl	1e-22
PRK08751	560	PRK08751, PRK08751, putative long-chain fatty acyl	4e-22
cd05903	437	cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li	2e-21
cd05959	506	cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and	3e-21
cd05907	456	cd05907, VL_LC_FACS_like, Long-chain fatty acid Co	2e-20
PRK12583	558	PRK12583, PRK12583, acyl-CoA synthetase; Provision	5e-20
COG1020	642	COG1020, EntF, Non-ribosomal peptide synthetase mo	6e-20
PLN02246	537	PLN02246, PLN02246, 4-coumarate--CoA ligase	6e-20
PRK07059	557	PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig	8e-20
PRK08316	523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	1e-19
cd12119	517	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth	2e-19
cd05935	430	cd05935, LC_FACS_like, Putative long-chain fatty a	8e-19
TIGR03098	517	TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form	2e-18
TIGR03205	541	TIGR03205, pimA, dicarboxylate--CoA ligase PimA	5e-18
PRK07514	504	PRK07514, PRK07514, malonyl-CoA synthase; Validate	9e-18
cd05944	359	cd05944, FACL_like_4, Uncharacterized subfamily of	1e-17
PRK07529	632	PRK07529, PRK07529, AMP-binding domain protein; Va	6e-16
PRK05677	562	PRK05677, PRK05677, long-chain-fatty-acid--CoA lig	2e-15
cd05920	483	cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l	4e-15
cd05919	436	cd05919, BCL_like, Benzoate CoA ligase (BCL) and s	4e-15
cd05922	350	cd05922, FACL_like_6, Uncharacterized subfamily of	1e-14
PLN02479	567	PLN02479, PLN02479, acetate-CoA ligase	1e-14
TIGR01733	409	TIGR01733, AA-adenyl-dom, amino acid adenylation d	2e-14
PLN02574	560	PLN02574, PLN02574, 4-coumarate--CoA ligase-like	6e-14
PRK08974	560	PRK08974, PRK08974, long-chain-fatty-acid--CoA lig	6e-14
PRK07798	533	PRK07798, PRK07798, acyl-CoA synthetase; Validated	6e-14
cd05921	559	cd05921, FCS, Feruloyl-CoA synthetase (FCS)	1e-13
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	3e-13
PRK12492	562	PRK12492, PRK12492, long-chain-fatty-acid--CoA lig	8e-13
PTZ00297	1452	PTZ00297, PTZ00297, pantothenate kinase; Provision	8e-13
PRK06188	524	PRK06188, PRK06188, acyl-CoA synthetase; Validated	2e-12
cd05930	445	cd05930, A_NRPS, The adenylation domain of nonribo	2e-12
PRK08162	545	PRK08162, PRK08162, acyl-CoA synthetase; Validated	8e-12
PRK05620	576	PRK05620, PRK05620, long-chain-fatty-acid--CoA lig	1e-11
cd12117	474	cd12117, A_NRPS_Srf_like, The adenylation domain o	1e-11
PRK06145	497	PRK06145, PRK06145, acyl-CoA synthetase; Validated	4e-11
cd05967	607	cd05967, PrpE, Propionyl-CoA synthetase (PrpE)	7e-11
PRK07786	542	PRK07786, PRK07786, long-chain-fatty-acid--CoA lig	9e-11
PRK08180	614	PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe	1e-10
cd12114	476	cd12114, A_NRPS_TlmIV_like, The adenylation domain	1e-10
PRK09192	579	PRK09192, PRK09192, acyl-CoA synthetase; Validated	1e-10
PRK06178	567	PRK06178, PRK06178, acyl-CoA synthetase; Validated	1e-10
PLN02330	546	PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1	2e-10
PRK07470	528	PRK07470, PRK07470, acyl-CoA synthetase; Validated	2e-10
cd05943	616	cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac	3e-10
TIGR02262	508	TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil	4e-10
PRK08008	517	PRK08008, caiC, putative crotonobetaine/carnitine-	4e-10
PRK08314	546	PRK08314, PRK08314, long-chain-fatty-acid--CoA lig	5e-10
PRK08315	559	PRK08315, PRK08315, AMP-binding domain protein; Va	6e-10
cd05931	547	cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)	8e-10
cd05970	537	cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s	8e-10
PRK08162	545	PRK08162, PRK08162, acyl-CoA synthetase; Validated	1e-09
cd05914	448	cd05914, FACL_like_3, Uncharacterized subfamily of	1e-09
cd05906	560	cd05906, A_NRPS_TubE_like, The adenylation domain	1e-09
cd05908	499	cd05908, A_NRPS_MycA_like, The adenylation domain	1e-09
PRK06188	524	PRK06188, PRK06188, acyl-CoA synthetase; Validated	2e-09
PRK08316	523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	3e-09
PRK12582	624	PRK12582, PRK12582, acyl-CoA synthetase; Provision	3e-09
PRK07786	542	PRK07786, PRK07786, long-chain-fatty-acid--CoA lig	6e-09
PRK08315	559	PRK08315, PRK08315, AMP-binding domain protein; Va	7e-09
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	9e-09
cd05903	437	cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li	1e-08
TIGR01733	409	TIGR01733, AA-adenyl-dom, amino acid adenylation d	2e-08
PRK06178	567	PRK06178, PRK06178, acyl-CoA synthetase; Validated	2e-08
PRK06018	542	PRK06018, PRK06018, putative acyl-CoA synthetase;	2e-08
PRK05852	534	PRK05852, PRK05852, acyl-CoA synthetase; Validated	2e-08
cd05973	440	cd05973, MACS_like_2, Uncharacterized subfamily of	2e-08
cd05972	430	cd05972, MACS_like, Medium-chain acyl-CoA syntheta	2e-08
cd12119	517	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth	3e-08
cd05919	436	cd05919, BCL_like, Benzoate CoA ligase (BCL) and s	3e-08
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	3e-08
PRK13295	547	PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig	3e-08
cd05941	430	cd05941, MCS, Malonyl-CoA synthetase (MCS)	4e-08
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	6e-08
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	7e-08
PRK06087	547	PRK06087, PRK06087, short chain acyl-CoA synthetas	1e-07
cd05945	447	cd05945, DltA, D-alanine:D-alanyl carrier protein	1e-07
PRK08276	502	PRK08276, PRK08276, long-chain-fatty-acid--CoA lig	1e-07
PRK08314	546	PRK08314, PRK08314, long-chain-fatty-acid--CoA lig	2e-07
cd05971	439	cd05971, MACS_like_3, Uncharacterized subfamily of	2e-07
PRK06155	542	PRK06155, PRK06155, crotonobetaine/carnitine-CoA l	2e-07
PRK04319	570	PRK04319, PRK04319, acetyl-CoA synthetase; Provisi	2e-07
PRK06087	547	PRK06087, PRK06087, short chain acyl-CoA synthetas	3e-07
PRK08633	1146	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola	3e-07
cd05906	560	cd05906, A_NRPS_TubE_like, The adenylation domain	4e-07
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	4e-07
cd05971	439	cd05971, MACS_like_3, Uncharacterized subfamily of	4e-07
PRK00174	637	PRK00174, PRK00174, acetyl-CoA synthetase; Provisi	4e-07
TIGR03208	538	TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate	4e-07
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	5e-07
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	7e-07
cd05935	430	cd05935, LC_FACS_like, Putative long-chain fatty a	8e-07
PRK06155	542	PRK06155, PRK06155, crotonobetaine/carnitine-CoA l	1e-06
cd12116	438	cd12116, A_NRPS_Ta1_like, The adenylation domain o	1e-06
PRK08008	517	PRK08008, caiC, putative crotonobetaine/carnitine-	2e-06
PRK07008	539	PRK07008, PRK07008, long-chain-fatty-acid--CoA lig	2e-06
PRK06334	539	PRK06334, PRK06334, long chain fatty acid--[acyl-c	2e-06
cd05968	474	cd05968, AACS_like, Uncharacterized acyl-CoA synth	3e-06
TIGR01734	502	TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho	3e-06
cd05972	430	cd05972, MACS_like, Medium-chain acyl-CoA syntheta	4e-06
PRK04813	503	PRK04813, PRK04813, D-alanine--poly(phosphoribitol	6e-06
TIGR02188	625	TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase	8e-06
cd05966	602	cd05966, ACS, Acetyl-CoA synthetase (also known as	1e-05
TIGR01217	652	TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase	2e-05
PRK09029	458	PRK09029, PRK09029, O-succinylbenzoic acid--CoA li	2e-05
PRK03584	655	PRK03584, PRK03584, acetoacetyl-CoA synthetase; Pr	3e-05
PRK08633	1146	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola	4e-05
PLN02860	563	PLN02860, PLN02860, o-succinylbenzoate-CoA ligase	4e-05
cd12117	474	cd12117, A_NRPS_Srf_like, The adenylation domain o	5e-05
cd05945	447	cd05945, DltA, D-alanine:D-alanyl carrier protein	5e-05
cd12116	438	cd12116, A_NRPS_Ta1_like, The adenylation domain o	5e-05
cd05969	443	cd05969, MACS_like_4, Uncharacterized subfamily of	6e-05
cd05937	468	cd05937, FATP_chFAT1_like, Uncharacterized subfami	6e-05
PRK05850	578	PRK05850, PRK05850, acyl-CoA synthetase; Validated	6e-05
PRK07867	529	PRK07867, PRK07867, acyl-CoA synthetase; Validated	6e-05
PLN03102	579	PLN03102, PLN03102, acyl-activating enzyme; Provis	7e-05
PRK10252	1296	PRK10252, entF, enterobactin synthase subunit F; P	9e-05
PRK06145	497	PRK06145, PRK06145, acyl-CoA synthetase; Validated	1e-04
cd12116	438	cd12116, A_NRPS_Ta1_like, The adenylation domain o	1e-04
PLN03102	579	PLN03102, PLN03102, acyl-activating enzyme; Provis	1e-04
cd05938	535	cd05938, hsFATP2a_ACSVL_like, Fatty acid transport	1e-04
PRK10524	629	PRK10524, prpE, propionyl-CoA synthetase; Provisio	1e-04
PLN02654	666	PLN02654, PLN02654, acetate-CoA ligase	1e-04
cd05918	447	cd05918, A_NRPS_SidN3_like, The adenylation (A) do	1e-04
TIGR02316	628	TIGR02316, propion_prpE, propionate--CoA ligase	1e-04
cd05930	445	cd05930, A_NRPS, The adenylation domain of nonribo	2e-04
TIGR03208	538	TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate	2e-04
PRK06164	540	PRK06164, PRK06164, acyl-CoA synthetase; Validated	2e-04
cd05923	495	cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)	2e-04
PRK06814	1140	PRK06814, PRK06814, acylglycerophosphoethanolamine	2e-04
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	3e-04
PRK06814	1140	PRK06814, PRK06814, acylglycerophosphoethanolamine	4e-04
cd05940	444	cd05940, FATP_FACS, Fatty acid transport proteins	4e-04
PRK13391	511	PRK13391, PRK13391, acyl-CoA synthetase; Provision	4e-04
PRK07788	549	PRK07788, PRK07788, acyl-CoA synthetase; Validated	4e-04
PRK12406	509	PRK12406, PRK12406, long-chain-fatty-acid--CoA lig	5e-04
PRK08279	600	PRK08279, PRK08279, long-chain-acyl-CoA synthetase	5e-04
cd05931	547	cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)	7e-04
PRK07824	358	PRK07824, PRK07824, O-succinylbenzoic acid--CoA li	7e-04
cd05945	447	cd05945, DltA, D-alanine:D-alanyl carrier protein	9e-04
cd05968	474	cd05968, AACS_like, Uncharacterized acyl-CoA synth	0.001
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	0.001
cd12115	449	cd12115, A_NRPS_Sfm_like, The adenylation domain o	0.001
PRK05857	540	PRK05857, PRK05857, acyl-CoA synthetase; Validated	0.001
PRK13295	547	PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig	0.002
PRK05857	540	PRK05857, PRK05857, acyl-CoA synthetase; Validated	0.002
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	0.003
cd05966	602	cd05966, ACS, Acetyl-CoA synthetase (also known as	0.003
PRK07867	529	PRK07867, PRK07867, acyl-CoA synthetase; Validated	0.003
PRK08180	614	PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe	0.004
PRK07470	528	PRK07470, PRK07470, acyl-CoA synthetase; Validated	0.004
PRK09274	552	PRK09274, PRK09274, peptide synthase; Provisional	0.004

>gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase

 Score =  967 bits (2502), Expect = 0.0
 Identities = 396/504 (78%), Positives = 450/504 (89%), Gaps = 1/504 (0%)

Query: 1   MSETYTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQ 60
           M+ETYTVKVEE+RPA  GKPS GPVYR IYAKDGLL+ PA ++SPWQFF D+ K+ PNNQ
Sbjct: 1   MAETYTVKVEESRPATGGKPSAGPVYRSIYAKDGLLDLPADIDSPWQFFSDAVKKYPNNQ 60

Query: 61  MLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120
           MLG R+V+D KVGPYVWLTY+EVYDAAIR GSA+RSRGVNPGDRCGIYGSNCPEWIIAME
Sbjct: 61  MLGRRQVTDSKVGPYVWLTYKEVYDAAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAME 120

Query: 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSF 180
           ACNSQ ITYVPLYDTLGANAVEFIINHAEVSIAFVQE+KI SILSCLP+C   LKTIVSF
Sbjct: 121 ACNSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKISSILSCLPKCSSNLKTIVSF 180

Query: 181 ANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVL 240
            +VSS QK+EAEELGVSCFSWEEF  +G+LDCELPPK+KT+I TIMYTSGTTGEPKGV+L
Sbjct: 181 GDVSSEQKEEAEELGVSCFSWEEFSLMGSLDCELPPKQKTDICTIMYTSGTTGEPKGVIL 240

Query: 241 TNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGD 300
           TN+AI+AEVLS D +  VT +V +EED+YFS+LPLAH+YDQ+IET+CI KG SIGFW+GD
Sbjct: 241 TNRAIIAEVLSTDHLLKVTDRVATEEDSYFSYLPLAHVYDQVIETYCISKGASIGFWQGD 300

Query: 301 VRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGM 360
           +RYLMED+Q LKPT+F GVPRVYDRIYTGI  KISSGG L KKLF+FAYNYKLGN++KG+
Sbjct: 301 IRYLMEDVQALKPTIFCGVPRVYDRIYTGIMQKISSGGMLRKKLFDFAYNYKLGNLRKGL 360

Query: 361 PQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTES 420
            Q +A+P LD LVF KI+E  GGR++ +LSGAAPLP HVEEFLRVTS + L+QGYGLTES
Sbjct: 361 KQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVEEFLRVTSCSVLSQGYGLTES 420

Query: 421 CSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYY 480
           C GCFTS+A+VF+M+GTVGVPMTT+EARLESVPEMGYDALS VPRGEICLRGNTLFSGY+
Sbjct: 421 CGGCFTSIANVFSMVGTVGVPMTTIEARLESVPEMGYDALSDVPRGEICLRGNTLFSGYH 480

Query: 481 KRPDLTEEVIVDGWFHTGK-NPWQ 503
           KR DLTEEV++DGWFHTG    WQ
Sbjct: 481 KRQDLTEEVLIDGWFHTGDIGEWQ 504

Length = 660

>gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase

 Score =  623 bits (1608), Expect = 0.0
 Identities = 278/501 (55%), Positives = 363/501 (72%), Gaps = 2/501 (0%)

Query: 5   YTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGG 64
           +  +VEE +  +DG+PS GPVYR I+AKDG      G++S W  F  S ++ PNN MLG 
Sbjct: 7   FIFQVEEGKEGSDGRPSVGPVYRSIFAKDGFPNPIEGMDSCWDVFRMSVEKYPNNPMLGR 66

Query: 65  RKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNS 124
           R++ DGK G YVW TYQEVYD  I+ G+++RS GV    +CGIYG+N PEWII+MEACN+
Sbjct: 67  REIVDGKPGKYVWQTYQEVYDIVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEACNA 126

Query: 125 QAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVS 184
             +  VPLYDTLGA AVEFII+H+EVSI FV+E KI  +    P    Y+KT+VSF  VS
Sbjct: 127 HGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVSFGGVS 186

Query: 185 SSQKKEAEELGVSCFSWEEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQ 243
             QK+EAE  G+  ++W+EFL+LG     +LP KKK++I TIMYTSGTTG+PKGV+++N+
Sbjct: 187 REQKEEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMISNE 246

Query: 244 AIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRY 303
           +IV  +  V ++        + +D Y S+LPLAHI+D++IE   I  G +IGFWRGDV+ 
Sbjct: 247 SIVTLIAGVIRLLKSANAALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGDVKL 306

Query: 304 LMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQN 363
           L+ED+ ELKPT+F  VPRV DR+Y+G+  K+S GG L K +F+ A++YK GNMKKG    
Sbjct: 307 LIEDLGELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFVFDSAFSYKFGNMKKGQSHV 366

Query: 364 KAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSG 423
           +A+PL D LVF+K+++  GG ++ +LSGAAPL  HVE FLRV +   + QGYGLTESC+G
Sbjct: 367 EASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHVESFLRVVACCHVLQGYGLTESCAG 426

Query: 424 CFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRP 483
            F SL D  +M+GTVG P+  V+ RLESVPEM YDAL+S PRGEIC+RG TLFSGYYKR 
Sbjct: 427 TFVSLPDELDMLGTVGPPVPNVDIRLESVPEMEYDALASTPRGEICIRGKTLFSGYYKRE 486

Query: 484 DLTEEVIVDGWFHTGK-NPWQ 503
           DLT+EV++DGW HTG    WQ
Sbjct: 487 DLTKEVLIDGWLHTGDVGEWQ 507

Length = 666

>gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase

 Score =  595 bits (1535), Expect = 0.0
 Identities = 240/497 (48%), Positives = 325/497 (65%), Gaps = 1/497 (0%)

Query: 3   ETYTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQML 62
           +++  +VEE     DGKPS GPVYR + +K G     + + + W  F  S ++ P+N+ML
Sbjct: 2   KSFAAQVEEGVKGKDGKPSVGPVYRNLLSKKGFPPIDSDITTAWDIFSKSVEKYPDNKML 61

Query: 63  GGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC 122
           G R++ DGKVGPY+W TY+EVY+  ++ GSA+R+ G  PG R GIYGSNCP+WI+AMEAC
Sbjct: 62  GWRRIVDGKVGPYMWKTYKEVYEEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAMEAC 121

Query: 123 NSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFAN 182
            + ++  VPLYDTLG  AV++I++HAE+   FVQ+ KI  +L    +    LK IVSF +
Sbjct: 122 AAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKIKELLEPDCKSAKRLKAIVSFTS 181

Query: 183 VSSSQKKEAEELGVSCFSWEEFLQLGTLD-CELPPKKKTNISTIMYTSGTTGEPKGVVLT 241
           V+  +  +A ++GV  +SW +FL +G  +  E  P K  +I TIMYTSGT+G+PKGVVLT
Sbjct: 182 VTEEESDKASQIGVKTYSWIDFLHMGKENPSETNPPKPLDICTIMYTSGTSGDPKGVVLT 241

Query: 242 NQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDV 301
           ++A+   V  VD          + +D Y SFLPLAHI D++IE +   KG S+G++ GD+
Sbjct: 242 HEAVATFVRGVDLFMEQFEDKMTHDDVYLSFLPLAHILDRMIEEYFFRKGASVGYYHGDL 301

Query: 302 RYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMP 361
             L +D+ ELKPT+ +GVPRV++RI+ GI   +       + +F   Y YKL  M +G  
Sbjct: 302 NALRDDLMELKPTLLAGVPRVFERIHEGIQKALQELNPRRRLIFNALYKYKLAWMNRGYS 361

Query: 362 QNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESC 421
             KA+P+ D L F K++   GGRL+ ++SG APL   +EEFLRVTS A + QGYGLTE+ 
Sbjct: 362 HKKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIEEFLRVTSCAFVVQGYGLTETL 421

Query: 422 SGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYK 481
                   D   M+GTVG P    E RLE VPEMGYD L   PRGEIC+RG  LFSGYYK
Sbjct: 422 GPTTLGFPDEMCMLGTVGAPAVYNELRLEEVPEMGYDPLGEPPRGEICVRGKCLFSGYYK 481

Query: 482 RPDLTEEVIVDGWFHTG 498
            P+LTEEV+ DGWFHTG
Sbjct: 482 NPELTEEVMKDGWFHTG 498

Length = 660

>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

 Score =  539 bits (1392), Expect = 0.0
 Identities = 194/428 (45%), Positives = 258/428 (60%), Gaps = 46/428 (10%)

Query: 73  GPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPL 132
           GPY W++Y+EV + A+  GS +R+ G+ PGD+ GI+  N PEWII  +AC SQ++  VPL
Sbjct: 1   GPYEWISYKEVEERALNIGSGLRALGLKPGDKIGIFAENRPEWIITEQACFSQSLVIVPL 60

Query: 133 YDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAE 192
           YDTLG  A+E+I+N  E+SI F    K+                                
Sbjct: 61  YDTLGEEAIEYILNETEISIVFCDAVKV-------------------------------- 88

Query: 193 ELGVSCFSWEEFLQLGTLD-CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLS 251
                 +S+EE  +LG  +     P K  +++TIMYTSGTTG PKGV+LT+  IVA V  
Sbjct: 89  ------YSFEELEELGKKNKVPPTPPKPEDLATIMYTSGTTGNPKGVMLTHGNIVAGVAG 142

Query: 252 VDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQEL 311
           ++++     +     D Y S+LPLAHI+++++E  C++ G  IG++ GD R L  DI+EL
Sbjct: 143 INKIV---PEFIGPTDVYISYLPLAHIFERVVENVCLYIGGRIGYYSGDTRGLKGDIKEL 199

Query: 312 KPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDS 371
           KPT+F GVPRV DRIY GI  K+++ G L + LF FAYNYKL  +++G     A+PL D 
Sbjct: 200 KPTVFVGVPRVLDRIYKGILAKVNAKGGLKRTLFNFAYNYKLAALRRG--HGYASPLWDK 257

Query: 372 LVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADV 431
           LVF KI+ A GGR++ MLSG APL    +EFLRV  G P+ QGYGLTE+C+G   S    
Sbjct: 258 LVFKKIKAALGGRVRLMLSGGAPLSPDTQEFLRVALGCPVLQGYGLTETCAGGTLSDPGD 317

Query: 432 FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI- 490
               G VG P+   E +L  VPEMGY A    PRGEIC+RG  +F GYYK P+ T E   
Sbjct: 318 TT-TGHVGPPLPCCEIKLVDVPEMGYFAKDDPPRGEICIRGPNVFKGYYKNPEKTAEAFD 376

Query: 491 VDGWFHTG 498
            DGWFHTG
Sbjct: 377 EDGWFHTG 384

The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539

>gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase

 Score =  415 bits (1069), Expect = e-139
 Identities = 184/457 (40%), Positives = 255/457 (55%), Gaps = 21/457 (4%)

Query: 49  FCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIY 108
           F  + +   + + LG R   DG VG Y W+TY E   A    GS +   G+  G   G+Y
Sbjct: 50  FVYAVETFRDYKYLGTRIRVDGTVGEYKWMTYGEAGTARTAIGSGLVQHGIPKGACVGLY 109

Query: 109 GSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLP 168
             N PEW+I   AC++ +   VPLYDTLG +AV+FI+NHAEV+  F     + ++LSCL 
Sbjct: 110 FINRPEWLIVDHACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQTLNTLLSCLS 169

Query: 169 RC-CLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELP-PKKKTNISTIM 226
               + L  IV                GV   ++ + L  G    +   P K  +++TI 
Sbjct: 170 EIPSVRL--IVVVGGADEPLPSLPSGTGVEIVTYSKLLAQGRSSPQPFRPPKPEDVATIC 227

Query: 227 YTSGTTGEPKGVVLTNQAIVAEV--LSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIE 284
           YTSGTTG PKGVVLT+  ++A V   S+   F  +       D + S+LPLAHIY+++ +
Sbjct: 228 YTSGTTGTPKGVVLTHGNLIANVAGSSLSTKFYPS-------DVHISYLPLAHIYERVNQ 280

Query: 285 THCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKL 344
              +H G ++GF++GD   LM+D+  L+PT+F  VPR+Y+RIY GI+N +   G L ++L
Sbjct: 281 IVMLHYGVAVGFYQGDNLKLMDDLAALRPTIFCSVPRLYNRIYDGITNAVKESGGLKERL 340

Query: 345 FEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLR 404
           F  AYN K   ++ G      +P+ D LVF+KI+   GGR++ M SGA+PL   V EFLR
Sbjct: 341 FNAAYNAKKQALENGKN---PSPMWDRLVFNKIKAKLGGRVRFMSSGASPLSPDVMEFLR 397

Query: 405 VTSGAPLTQGYGLTESCSGCFTSLADVF-NMIGTVGVPMTTVEARLESVPEMGY-DALSS 462
           +  G  + +GYG+TE  + C  S  D   N+ G VG P    E +L  VPEM Y      
Sbjct: 398 ICFGGRVLEGYGMTE--TSCVISGMDEGDNLSGHVGSPNPACEVKLVDVPEMNYTSEDQP 455

Query: 463 VPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTG 498
            PRGEIC+RG  +F GYYK    T EVI  DGW HTG
Sbjct: 456 YPRGEICVRGPIIFKGYYKDEVQTREVIDEDGWLHTG 492

Length = 651

>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

 Score =  344 bits (885), Expect = e-112
 Identities = 144/438 (32%), Positives = 225/438 (51%), Gaps = 36/438 (8%)

Query: 73  GPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPL 132
           G +  +TY+E+Y+      S + S G+  GDR  I+ +N PEW IA  A  +     VP+
Sbjct: 41  GGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADLAILALGAVSVPI 100

Query: 133 YDTLGANAVEFIINHAEVSIAFVQENKIPS-ILSCLPRCCLYLKTIVSFANV------SS 185
           Y T     + +I+N +E  + FV+  ++   +L  L  C   +  IV    V       +
Sbjct: 101 YSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVIIDLVREAVEAKA 160

Query: 186 SQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAI 245
              +   + G+S F     +    L+  + P K  +++TI+YTSGTTG PKGV+LT++ +
Sbjct: 161 LVLEVFPDEGISLFL----IDSAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNL 216

Query: 246 VAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLM 305
           +A+V  +D++    G      D   SFLPLAHI+++  E      G     ++ D R L+
Sbjct: 217 LAQVAGIDEVLPPIG----PGDRVLSFLPLAHIFERAFEGGLALYGGVTVLFKEDPRTLL 272

Query: 306 EDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKA 365
           ED++E++PT+  GVPRV++++Y GI  K++   A+ +KLF +A       + + +     
Sbjct: 273 EDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYKKISRALLGGGP 332

Query: 366 APLL---DSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCS 422
              L   D LVF KIR+A GGR++  LSG APL   +  F R + G P+ +GYGLTE+ +
Sbjct: 333 LSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFR-SLGIPILEGYGLTETSA 391

Query: 423 G-CFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYK 481
                        +GTVG P+  +E ++                GEI +RG  +  GYYK
Sbjct: 392 VVSVNPPDRFV--LGTVGKPLPGIEVKI-------------ADDGEILVRGPNVMKGYYK 436

Query: 482 RPDLTEEVIV-DGWFHTG 498
            P+ T E    DGWF TG
Sbjct: 437 NPEATAEAFTEDGWFRTG 454

Length = 613

>gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein

 Score =  268 bits (686), Expect = 6e-82
 Identities = 173/508 (34%), Positives = 253/508 (49%), Gaps = 62/508 (12%)

Query: 39  PAGLESPW-------QFFCDSAKRIPNNQMLGGRKV--------SDGK------VGPYVW 77
           P  +E+PW         F  S K+  + ++LG RK+        SDG+      +G Y W
Sbjct: 47  PELVETPWEGATTLAALFEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEW 106

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           +TY +V++    F S + + G N  +R  I+     EW+IA++ C  Q IT V +Y +LG
Sbjct: 107 ITYGQVFERVCNFASGLVALGHNKEERVAIFADTRAEWLIALQGCFRQNITVVTIYASLG 166

Query: 138 ANAVEFIINHAEVSIAFV---QENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEEL 194
             A+   +N  EV+       Q  K+  I S L      +K ++   +            
Sbjct: 167 EEALCHSLNETEVTTVICDSKQLKKLIDISSQLET----VKRVIYMDDEGVDSDSSLSGS 222

Query: 195 G---VSCFSWEEFL-QLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVL 250
               VS FS  E L +   +D +LP     +I+ IMYTSG+TG PKGV++T+  IVA V 
Sbjct: 223 SNWTVSSFSEVEKLGKENPVDPDLP--SPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVA 280

Query: 251 SVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLME---- 306
            V  M VV      + D Y ++LPLAHI +   E+     G +IG+  G    L +    
Sbjct: 281 GV--MTVVPK--LGKNDVYLAYLPLAHILELAAESVMAAVGAAIGY--GSPLTLTDTSNK 334

Query: 307 -------DIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKG 359
                  D   LKPT+ + VP + DR+  G+  K+ + G L+KKLF+ AY  +L  ++  
Sbjct: 335 IKKGTKGDASALKPTLMTAVPAILDRVRDGVRKKVDAKGGLAKKLFDIAYKRRLAAIEGS 394

Query: 360 MPQNKAAPLL--DSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGL 417
                    L  D+LVF KIR   GGR++ MLSG APL    + F+ +  GAP+ QGYGL
Sbjct: 395 WFGAWGLEKLLWDALVFKKIRAVLGGRIRFMLSGGAPLSGDTQRFINICLGAPIGQGYGL 454

Query: 418 TESCSG-CFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSS-VPRGEICLRGNTL 475
           TE+C+G  F+   D    +G VG P+     +L S  E GY      +PRGEI + G ++
Sbjct: 455 TETCAGATFSEWDDT--SVGRVGPPLPCCYVKLVSWEEGGYLISDKPMPRGEIVIGGPSV 512

Query: 476 FSGYYKRPDLTEEVI-VDG----WFHTG 498
             GY+K  + T+EV  VD     WF+TG
Sbjct: 513 TLGYFKNQEKTDEVYKVDERGMRWFYTG 540

Length = 696

>gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional

 Score =  266 bits (681), Expect = 5e-81
 Identities = 141/443 (31%), Positives = 221/443 (49%), Gaps = 41/443 (9%)

Query: 76  VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDT 135
            ++TY E+++  + FG  +   G+  G    IY     EW+ ++    SQ++    +Y  
Sbjct: 120 RYITYAELWERIVNFGRGLAELGLTKGSNVAIYEETRWEWLASIYGIWSQSMVAATVYAN 179

Query: 136 LGANAVEFIINHAEVSIAFVQENKIPSILSCL-----PRCCLYLKTIVSFANVSSSQKKE 190
           LG +A+ + +   E          +P++L  +     P       TI+   ++ +S   E
Sbjct: 180 LGEDALAYALRETECKAIVCNGKNVPNLLRLMKSGGMPNT-----TIIYLDSLPASVDTE 234

Query: 191 AEELGVSCFSWEEFLQLGTLD-CELPPKKKTN---ISTIMYTSGTTGEPKGVVLTNQAIV 246
               G    +W + +  G       P     N   ++ IMYTSGTTG+PKGV+ T+ ++ 
Sbjct: 235 ----GCRLVAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTGDPKGVMHTHGSLT 290

Query: 247 AEVLSVDQMFV-VTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLM 305
           A +L+++     + G    E++TY S+LPLAHI +  +    + +G  IGF  G  R L 
Sbjct: 291 AGILALEDRLNDLIGPP-EEDETYCSYLPLAHIMEFGVTNIFLARGALIGF--GSPRTLT 347

Query: 306 E-------DIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKK 358
           +       D+ E +P    GVPR++D I   +  K+   G+L +++F+ AY  +L  +K+
Sbjct: 348 DTFARPHGDLTEFRPVFLIGVPRIFDTIKKAVEAKLPPVGSLKRRVFDHAYQSRLRALKE 407

Query: 359 GMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLT 418
           G    K  P  +  VFS  R   GGR++AMLSG  PL    +EF+ V  G  + QG+GLT
Sbjct: 408 G----KDTPYWNEKVFSAPRAVLGGRVRAMLSGGGPLSAATQEFVNVVFG-MVIQGWGLT 462

Query: 419 ESCSGCFTSLADVFNM-IGTVGVPMTTVEARLESVPEMGY-DALSSVPRGEICLRGNTLF 476
           E+   C   +    ++    VG  +  VE +L    E  + D     PRGEI LRG  LF
Sbjct: 463 ETV--CCGGIQRTGDLEPNAVGQLLKGVEMKLLDTEEYKHTDT--PEPRGEILLRGPFLF 518

Query: 477 SGYYKRPDLTEEVIV-DGWFHTG 498
            GYYK+ +LT EV+  DGWFHTG
Sbjct: 519 KGYYKQEELTREVLDEDGWFHTG 541

Length = 700

>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme

 Score =  242 bits (620), Expect = 3e-75
 Identities = 112/431 (25%), Positives = 177/431 (41%), Gaps = 78/431 (18%)

Query: 79  TYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGA 138
           TY+E+ + A R  +A+R+ GV PGDR  I   N PEW++A+ A       YVPL  +L A
Sbjct: 1   TYRELDERANRLAAALRALGVGPGDRVAILLPNSPEWVVAILAVLKAGAAYVPLDPSLPA 60

Query: 139 NAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSC 198
             + +I+  +E  +    +  +P +L  L +  + L  I+   +       + E L    
Sbjct: 61  ERLAYILEDSEAKVLITDDELLPKLLEVLLKLLVLLALIIVGDDGEGLDLLDDELLA--- 117

Query: 199 FSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVV 258
                     + +   PP    +++ I+YTSGTTG+PKGV+LT++ ++A    + + F +
Sbjct: 118 --------GASAEPPAPPVDPDDLAYIIYTSGTTGKPKGVMLTHRNLLALAAGLAERFGL 169

Query: 259 TGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGF---WRGDVRYLMEDIQELKPTM 315
           T       D     LPL            +  G ++     +  D   L++ I++ K T+
Sbjct: 170 T-----PGDRVLLLLPLHFDGSVWEIFGPLLAGGTLVLVPKFTLDPARLLDLIEKYKVTV 224

Query: 316 FSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFS 375
             GVP +   +                                       AP       S
Sbjct: 225 LYGVPTLLRLLL-------------------------------------KAPEEKKYDLS 247

Query: 376 KIREAFGGRLQAMLSGAAPLPIHV-EEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNM 434
            +R         +LSG  PLP  +         G PL  GYG TE+      +L     +
Sbjct: 248 SLRL--------VLSGGEPLPPELLRRLRERFGGVPLVNGYGPTETTVVATANLPGDPEV 299

Query: 435 -IGTVGVPMTTVEARLESVPEMGYDALSSVP---RGEICLRGNTLFSGYYKRPDLTEEVI 490
             G++G P+  VE ++  + E G      VP    GE+C+RG  +  GY   P+LT E  
Sbjct: 300 KPGSIGRPLPGVEVKV--LDEEG----EPVPPGEVGELCIRGPGVARGYLNDPELTAERF 353

Query: 491 V-DGWF--HTG 498
           V DGW    TG
Sbjct: 354 VEDGWGMYRTG 364

Length = 412

>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases

 Score =  239 bits (613), Expect = 1e-73
 Identities = 97/279 (34%), Positives = 146/279 (52%), Gaps = 54/279 (19%)

Query: 222 ISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ 281
           ++T++YTSGTTG PKGV+LT++ ++A+  ++ ++  ++       D   SFLPLAH+++Q
Sbjct: 90  LATLIYTSGTTGNPKGVMLTHRNLLAQAAALLEVIPLS-----PGDRVLSFLPLAHVFEQ 144

Query: 282 IIETH-CIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGAL 340
            +  +  +  G  + F       L+ED++E++PT+F  VPRV+++IY GI  K+++ G L
Sbjct: 145 RLGEYLPLSSGARVNF-AESPETLLEDLREVRPTVFFAVPRVWEKIYAGIEAKVAAAGPL 203

Query: 341 SKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVE 400
            +KLF +A                                 GGRL+  +SG APLP  V 
Sbjct: 204 KRKLFRWA-------------------------------LGGGRLRFAVSGGAPLPPEVL 232

Query: 401 EFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDAL 460
           EF R   G P+ +GYGLTE+      +       IGTVG P+  VE R+           
Sbjct: 233 EFFR-ALGIPILEGYGLTETSGVATVNRPGDIR-IGTVGKPLPGVEVRI----------- 279

Query: 461 SSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTG 498
                GEI +RG  +  GYYK P+ T E +  DGW HTG
Sbjct: 280 --AEDGEILVRGPNVMKGYYKNPEATAEALDEDGWLHTG 316

This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456

>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase

 Score =  241 bits (616), Expect = 2e-73
 Identities = 132/444 (29%), Positives = 193/444 (43%), Gaps = 82/444 (18%)

Query: 69  DGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAIT 128
            G+   Y   T+ +V D A R  +A++S G+ PGDR  I   NC EWIIA  A       
Sbjct: 1   GGQWHEY---TWAQVADQARRIAAALQSLGLEPGDRIAILSKNCAEWIIADLAIWMAGHV 57

Query: 129 YVPLYDTLGANAVEFIINHAEVSIAFV--------QENKIPSILSCLPRCCLYLKTIVSF 180
            VPLY TL A  + +++ H++    FV         +  +P  L  +        T+   
Sbjct: 58  SVPLYPTLTAETIRYVLEHSDAKALFVGKLDDWDAMKAGVPEGLPTIIL--FPYSTLKDH 115

Query: 181 ANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVL 240
                             + W++ L         P  +  +++TI+YTSGTTG+PKGV+L
Sbjct: 116 ------------------YKWDDLLAATEPLQGRPLPEPEDLATIVYTSGTTGQPKGVML 157

Query: 241 TNQAI--VAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD-QIIETHCIHKGCSIGFW 297
           +  A    A+               +  D   S+LPLAHI +  I+E   ++ G  + F 
Sbjct: 158 SFGAFAFAAQGTIEIIGL-------TPNDRLLSYLPLAHIAERVIVEGGSLYSGAEVFFV 210

Query: 298 RGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMK 357
              +     D+Q  +PT+F  VPR++ +   GI  K+       +KL     N  L    
Sbjct: 211 ES-LDTFAADLQRARPTVFFSVPRLWTKFQQGILAKLP-----PEKL-----NLLLKI-- 257

Query: 358 KGMPQNKAAPLLDSLVFSKIREAFG-GRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYG 416
                    P+L SLV  KI +  G  + +   SGAAP+P  +  + R   G P+ +GYG
Sbjct: 258 ---------PILSSLVKKKILKGLGLDQARLAGSGAAPMPPALIAWYR-KLGLPICEGYG 307

Query: 417 LTESC-SGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTL 475
           +TE+          D    IGTVG P+  VE ++                GEI +R   L
Sbjct: 308 MTENFAYSTLNYPGD--RRIGTVGKPIPGVELKIS-------------EDGEILIRSPGL 352

Query: 476 FSGYYKRPDLTEEVIV-DGWFHTG 498
            SGYYK P+ T E    DGW HTG
Sbjct: 353 MSGYYKDPEKTAEAFTEDGWLHTG 376

The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504

>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS)

 Score =  206 bits (526), Expect = 1e-59
 Identities = 132/454 (29%), Positives = 210/454 (46%), Gaps = 65/454 (14%)

Query: 75  YVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIA-MEACNSQAITYVPLY 133
           +  LTY++ Y+A  +   A    G+      GI G N PEW IA + A  +  I  V +Y
Sbjct: 6   WHTLTYKQYYEACRQAAKAFLKLGLERFHSVGILGFNSPEWFIAAVGAIFAGGIA-VGIY 64

Query: 134 DTLGANAVEFIINHAEVSIAFV----QENKIPSILSCLPRCCLYLKTIVSFANVSSSQKK 189
            T    A +++   +E +I  V    Q  KI +I   LP     LK I+ +       ++
Sbjct: 65  TTNSPEACQYVAETSEANILVVDNAKQLQKILAIQDQLPH----LKAIIQY-------RE 113

Query: 190 EAEELGVSCFSWEEFLQLG------TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQ 243
             +E   + +SW+EF++LG       LD  +  +K     T++YTSGTTG PKGV+L++ 
Sbjct: 114 PLKEKEPNLYSWKEFMELGRSIPDEQLDAIIESQKPNQCCTLIYTSGTTGMPKGVMLSHD 173

Query: 244 AIV--AEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETH-CIHKGCSIGFWRGD 300
            I   A+           G+     ++  S+LPL+HI  QI++    I  G  + F + D
Sbjct: 174 NITWTAKAAVKHMDLRTVGQ-----ESVVSYLPLSHIAAQILDIWLPISVGGCVYFAQPD 228

Query: 301 VR--YLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKK 358
                L++ ++E++PT F GVPRV+++I   +    +    L +K+  +A          
Sbjct: 229 ALKGTLVKTLREVRPTAFMGVPRVWEKIQERMKAVGAKSTGLKRKIASWA-------KGV 281

Query: 359 GMPQNKAAP-----------LLDSLVFSKIREAFG-GRLQAMLSGAAPLPIHVEEFLRVT 406
           G+  N               L   LVF K+R+A G  R Q   +GAAP+     EF  ++
Sbjct: 282 GLETNLKLMGGESPPPMCFRLAKKLVFKKVRKALGLDRCQKFFTGAAPISRETLEFF-LS 340

Query: 407 SGAPLTQGYGLTESCSGCFT-SLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPR 465
              P+ + YG++E  SG  T S    +  + + G  +   E ++ +    G         
Sbjct: 341 LNIPIMELYGMSE-TSGPHTVSNPQNYR-LLSCGKALPGCETKIHNPDADGI-------- 390

Query: 466 GEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTG 498
           GEIC+ G  +F GY    + TEE I  DGW H+G
Sbjct: 391 GEICIWGRHVFMGYLNMEEKTEEAIDEDGWLHSG 424

This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594

>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  203 bits (519), Expect = 4e-59
 Identities = 112/438 (25%), Positives = 167/438 (38%), Gaps = 87/438 (19%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           LTY+E+   A R  +A+++ GV PGDR  I   N PE++IA  A        VPL   L 
Sbjct: 39  LTYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAFLAALRAGAVAVPLNPRLT 98

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
              + +I+N A   +          + +      + L  ++                   
Sbjct: 99  PRELAYILNDAGAKVLITSAEFAALLEAVAEALPVVLVVLLVGDADDRLPI--------- 149

Query: 198 CFSWEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMF 256
             + E     G   D +  P    +++ ++YTSGTTG PKGVVLT++ ++A    +    
Sbjct: 150 --TLEALAAEGPGPDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAAL 207

Query: 257 VVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLM----------- 305
              G   + +D   S+LPL HI+  I+       G       G    L+           
Sbjct: 208 ---GGGLTPDDVVLSWLPLFHIFGLIV-------GLLAPLLGGGTLVLLSPEPFDPEEVL 257

Query: 306 EDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKA 365
             I++ K T+ SGVP                                             
Sbjct: 258 WLIEKYKVTVLSGVPTFLRE---------------------------------------- 277

Query: 366 APLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHV-EEFLRVTSGAPLTQGYGLTESCSG- 423
             LLD+    K  +     L+ +LSG APLP  + E F        + +GYGLTE+    
Sbjct: 278 --LLDNP--EKDDDDLSSSLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVV 333

Query: 424 CFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPR--GEICLRGNTLFSGYYK 481
                 D+    G+VG P+  VE R+        D    +P   GEI +RG  +  GY+ 
Sbjct: 334 TINPPDDLLAKPGSVGRPLPGVEVRIVDP-----DGGEVLPGEVGEIWVRGPNVMKGYWN 388

Query: 482 RPDLTEEVIV-DGWFHTG 498
           RP+ T E    DGW  TG
Sbjct: 389 RPEATAEAFDEDGWLRTG 406

Length = 534

>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD

 Score =  190 bits (484), Expect = 1e-54
 Identities = 111/464 (23%), Positives = 174/464 (37%), Gaps = 124/464 (26%)

Query: 47  QFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCG 106
                +A+R P+   L       G+      LTY E+ + + RF + ++  GV  GDR  
Sbjct: 3   DLLERAARRFPDRPAL----TFFGRK-----LTYAELDELSDRFAAYLQQLGVKKGDRVA 53

Query: 107 IYGSNCPEWIIAMEACNSQAITYV-----PLYDTLGANAVEFIINHAEVSIAFVQENKIP 161
           +   NCP++ IA           V     PLY       +E  +N +   +  V      
Sbjct: 54  LMLPNCPQFPIAYFGI--LKAGAVVVPVNPLYT---PRELEHQLNDSGAKVLIV------ 102

Query: 162 SILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTN 221
                                                 S+E+ L  G            +
Sbjct: 103 ------------------------------------AISFEDALASGAPLPLPVELSPDD 126

Query: 222 ISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ 281
           ++ + YT GTTG PKG +LT++ +VA   +V Q+      +   ED + + LPL HI+  
Sbjct: 127 LAVLQYTGGTTGVPKGAMLTHRNLVA---NVQQIAAWVKDLREGEDRFLTALPLFHIFGL 183

Query: 282 IIET-HCIHKGCSIGFW-RGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGA 339
            +     +  G +           ++++I+  + T+F GVP     +Y  + N       
Sbjct: 184 TVNMLLGLRLGATNVLVPNFRPINVLKEIKRYRFTIFPGVPT----LYNALLN------- 232

Query: 340 LSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHV 399
                                      P      FS +R          +SG APLP+ V
Sbjct: 233 --------------------------HPEFKKYDFSSLRLC--------ISGGAPLPVEV 258

Query: 400 -EEFLRVTSGAPLTQGYGLTE-SCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGY 457
            E F   T GAPL +GYGLTE S       L       G++G+P+   E ++        
Sbjct: 259 AERFEEKT-GAPLVEGYGLTETSPVTTVNPLDGE-RKPGSIGLPLPGTEVKIVD------ 310

Query: 458 DALSSVPR---GEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTG 498
           D  + +P    GE+ +RG  +  GY+ RP+ T EV+ DGW  TG
Sbjct: 311 DEGNELPPGEVGELVVRGPQVMKGYWNRPEETAEVLTDGWLRTG 354

This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468

>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL)

 Score =  174 bits (444), Expect = 1e-48
 Identities = 99/425 (23%), Positives = 163/425 (38%), Gaps = 62/425 (14%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           LT+ ++   A+R    +R  G+  GD   +   N  E+      C +          +  
Sbjct: 11  LTFADLLKKALRLAKGLRKLGLKQGDVVALISPNSIEFPPVFLGCLAAGGIVSAANPSYT 70

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
            + +   +  ++  + F   +++  +     +    +  I+       S       +   
Sbjct: 71  PDELAHQLKISKPKLIFCDPDELDKVKEAA-KELGPVVRIIVL----DSAPDGVLRIED- 124

Query: 198 CFSWEEFLQLGTLDCELPPK-KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMF 256
               E  L         P    K + + ++Y+SGTTG PKGV+L+++ I+A +  V    
Sbjct: 125 --LLEPRLGAEDEFRPTPLIDGKDDTAALLYSSGTTGLPKGVMLSHKNIIANLSQVQDTL 182

Query: 257 VVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGC-SIGFWRGDVRYLMEDIQELKPTM 315
              G   S  D   +FLP  H Y        +  G   I   + D    ++ I++ K T 
Sbjct: 183 --KGNPDSSNDVVLTFLPFYHAYGLTTTLASLLCGATVIIMPKFDSETFLKLIEKYKVTS 240

Query: 316 FSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFS 375
              VP +                AL+K                       +PL+D    S
Sbjct: 241 LFLVPPIAV--------------ALAK-----------------------SPLVDKYDLS 263

Query: 376 KIREAFGGRLQAMLSGAAPLPIHVEEFLRV-TSGAPLTQGYGLTESCSGCFTSLADVFNM 434
            +R  F        SGAAPL   ++E LR       + QGYG+TE+      +       
Sbjct: 264 SLRVIF--------SGAAPLSKELQEELRKRFPNTTIKQGYGMTETGPATTLTPPG-DEK 314

Query: 435 IGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV-DG 493
            G+VG  +  VEA++  V E G  +L    RGE+C++G  +  GY   P+ T+E I  DG
Sbjct: 315 PGSVGRLVPNVEAKI--VDEDGGKSLGPNERGELCVKGPQIMKGYLNNPEATKETIDEDG 372

Query: 494 WFHTG 498
           W HTG
Sbjct: 373 WLHTG 377

This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487

>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated

 Score =  173 bits (441), Expect = 5e-48
 Identities = 108/438 (24%), Positives = 172/438 (39%), Gaps = 88/438 (20%)

Query: 79  TYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGA 138
           TY E+ +   R  +A+R+ GV  GDR  ++  N  E++ A  A         P+   L  
Sbjct: 33  TYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYFAVPKIGAVLHPINIRLKP 92

Query: 139 NAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSC 198
             + +I+N AE  +  V    +P + + LP+        V    V       A  L    
Sbjct: 93  EEIAYILNDAEDRVVLVDSEFVPLLAAILPQL-----PTVRTVIVEGD--GPAAPLAPEV 145

Query: 199 FSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVV 258
             +EE L   +   + P   + + + ++YTSGTTG PKGVVL+++ +    L+V     +
Sbjct: 146 GEYEELLAAASDTFDFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWLKL 205

Query: 259 TGKVCSEEDTYFSFLPLAHIYDQIIETHC----IHKGCSI---GFWRGDVRYLMEDIQEL 311
           +      +D Y   +P+ H++            +  G         R D   L++ I+  
Sbjct: 206 S-----RDDVYLVIVPMFHVH----AWGLPYLALMAGAKQVIPR--RFDPENLLDLIETE 254

Query: 312 KPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDS 371
           + T F  VP ++                                M   + +   A  +D 
Sbjct: 255 RVTFFFAVPTIW-------------------------------QM---LLKAPRAYFVD- 279

Query: 372 LVFSKIREAFGGRLQAMLSGAAPLPIH-VEEFLRVTSGAPLTQGYGLTESCS-GCFTSLA 429
             FS +R         ++ G A LP   + EF     G  L QGYG+TE+          
Sbjct: 280 --FSSLRL--------VIYGGAALPPALLREFKEKF-GIDLVQGYGMTETSPVVSVLPPE 328

Query: 430 D----VFNMIGTVGVPMTTVEARL-----ESVPEMGYDALSSVPRGEICLRGNTLFSGYY 480
           D     +    + G P+  VEAR+     + +P  G +       GEI +RG  L  GY+
Sbjct: 329 DQLPGQWTKRRSAGRPLPGVEARIVDDDGDELPPDGGEV------GEIIVRGPWLMQGYW 382

Query: 481 KRPDLTEEVIVDGWFHTG 498
            RP+ T E I  GW HTG
Sbjct: 383 NRPEATAETIDGGWLHTG 400

Length = 521

>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated

 Score =  171 bits (435), Expect = 3e-47
 Identities = 107/446 (23%), Positives = 166/446 (37%), Gaps = 104/446 (23%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           LTY E+     R  +A+ + G+  GDR  I+  N P W+IA           VPL     
Sbjct: 31  LTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAALGALKAGAVVVPLNTRYT 90

Query: 138 ANAVEFIINHAEVSIAFVQENKIP---SILSCLPRCCLYLKTIVSFANVSSSQKKEAEEL 194
           A+   +I+   +    FV    +    S  + LP     L+ +V        + +E +  
Sbjct: 91  ADEAAYILARGDAKALFVLGLFLGVDYSATTRLPA----LEHVVIC------ETEEDDPH 140

Query: 195 GVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLT------NQAIVAE 248
                ++ +FL  G      P     +++ I++TSGTTG PKG +LT      N A  AE
Sbjct: 141 TEKMKTFTDFLAAGDPAERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAE 200

Query: 249 VLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG--------- 299
            L +            E D Y +  P  H++           G +    RG         
Sbjct: 201 YLGLT-----------EGDRYLAANPFFHVF-------GYKAGVNAPLMRGATILPLPVF 242

Query: 300 DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKG 359
           D   +   I+  + T+  G P +Y+ +                                 
Sbjct: 243 DPDEVFRLIETERITVLPGPPTMYNSLL-------------------------------- 270

Query: 360 MPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLP---IH-VEEFLRVTSGAPLTQGY 415
                  P   +   S +R A        ++GAA +P   +   E  L V     +  GY
Sbjct: 271 -----QHPDRSAEDLSSLRLA--------VTGAASMPVALLERFESELGVDI---VLTGY 314

Query: 416 GLTESCS-GCFTSLADVFNMI-GTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGN 473
           GL+E+     F  L D    + GT+G  +  VE ++  V E+G +       GE+ +RG 
Sbjct: 315 GLSEASGVTTFNRLDDDRKTVAGTIGTAIAGVENKI--VNELGEEVPVGEV-GELLVRGP 371

Query: 474 TLFSGYYKRPDLTEEVI-VDGWFHTG 498
            +  GYY  P+ T   I  DGW HTG
Sbjct: 372 NVMKGYYDDPEATAAAIDADGWLHTG 397

Length = 513

>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional

 Score =  161 bits (410), Expect = 9e-43
 Identities = 90/316 (28%), Positives = 168/316 (53%), Gaps = 17/316 (5%)

Query: 188 KKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVA 247
           K++A++LG+S   +++  +  T + ++  +    I++I+YTSGT+G+PKGV+L+N+ +  
Sbjct: 272 KEKAKKLGISIILFDDMTKNKTTNYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYN 331

Query: 248 EVLSV-DQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLME 306
            V+ +                T+ S+LP++HIY+++I       G +I  W  D+ Y  +
Sbjct: 332 TVVPLCKHSIFKKYNP----KTHLSYLPISHIYERVIAYLSFMLGGTINIWSKDINYFSK 387

Query: 307 DIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAA 366
           DI   K  + +GVP+V++RIYT I  +I++   L + L +   + +  N   G  +    
Sbjct: 388 DIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLVKKILSLRKSNNNGGFSK---- 443

Query: 367 PLLDSL--VFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGC 424
             L+ +  + SKI++     L+ +L+G   L   + E L V       QGYGLTE+    
Sbjct: 444 -FLEGITHISSKIKDKVNPNLEVILNGGGKLSPKIAEELSVLLNVNYYQGYGLTETTGPI 502

Query: 425 FTSLADVFNMIGTVGVPMT-TVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRP 483
           F   AD  N   ++G P++   + ++ +     Y A  ++P+GE+ ++ +++FSGY+   
Sbjct: 503 FVQHADDNNT-ESIGGPISPNTKYKVRTWET--YKATDTLPKGELLIKSDSIFSGYFLEK 559

Query: 484 DLTEEVIV-DGWFHTG 498
           + T+     DG+F TG
Sbjct: 560 EQTKNAFTEDGYFKTG 575

Length = 746

>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  134 bits (340), Expect = 3e-35
 Identities = 73/286 (25%), Positives = 109/286 (38%), Gaps = 69/286 (24%)

Query: 224 TIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD-QI 282
            I YTSGTTG PKG +LT++ ++    S+ +   +T     E D     +PL H++   +
Sbjct: 6   LIQYTSGTTGRPKGAMLTHRNVLNNGYSIARRLGLT-----EGDRTLVPVPLFHVFGLVL 60

Query: 283 IETHCIHKGCSI---GFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGA 339
                +  G ++     +  D    +  I+  + T   GVP ++  +             
Sbjct: 61  GVLASLTAGATLVLMEKF--DPGAALRLIERERITALHGVPTMFIALLE----------- 107

Query: 340 LSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPI-H 398
                                      P  D    S +R          +SG AP+P   
Sbjct: 108 --------------------------HPDFDKFDLSSLR--------TGISGGAPVPPEL 133

Query: 399 VEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNM--IGTVGVPMTTVEARLESVPEMG 456
           V         A +T GYG+TE+      +  D       GTVG P+  VE ++       
Sbjct: 134 VRRIREEFPMAEITTGYGMTETSGVGTQTSGDDPYEDRPGTVGRPLPGVEVKIVD----- 188

Query: 457 YDALSSVP---RGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTG 498
                 VP    GEIC+RG ++  GYY  P+ T E I  DGW HTG
Sbjct: 189 -PDGGEVPPGEVGEICVRGYSVMKGYYNDPEATAEAIDADGWLHTG 233

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347

>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins

 Score =  132 bits (334), Expect = 2e-34
 Identities = 76/279 (27%), Positives = 121/279 (43%), Gaps = 61/279 (21%)

Query: 225 IMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIE 284
           I+YTSGTTG PKGV+LT++ ++A  ++        G   S  D Y    PL H    +  
Sbjct: 6   ILYTSGTTGRPKGVMLTHRNLLANAVNALA-----GVDLSPGDVYLLAAPLYHAAGGLFL 60

Query: 285 THCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKK 343
              +  G ++      D   +++ I+  + T    VP ++ R+                +
Sbjct: 61  LPALAAGGTVVLMPKFDPEAVLDLIERHRVTHTFLVPTMFQRLL---------------R 105

Query: 344 LFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFL 403
           L +FA  Y L +++                              ++ GAAP+P  ++  +
Sbjct: 106 LPDFA-RYDLSSLRL-----------------------------IIYGAAPMPAELKRAM 135

Query: 404 RVTSGAPLTQGYGLTESCSGCF-TSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSS 462
               G    QGYG+TE+       S  D    +G+VG P+  VE R+  V E G +    
Sbjct: 136 IEWFGPVFVQGYGMTETGPTTTLLSPEDWLRKLGSVGRPVPGVEVRI--VDEDGRE---- 189

Query: 463 VPR---GEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTG 498
           +P    GEI +RG  + +GY+ RP+ T E + DGW HTG
Sbjct: 190 LPPGEVGEIVVRGPAVMAGYWNRPEATAEALRDGWLHTG 228

Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342

>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated

 Score =  132 bits (333), Expect = 6e-33
 Identities = 127/465 (27%), Positives = 191/465 (41%), Gaps = 118/465 (25%)

Query: 79  TYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYV---PLYDT 135
           TY E+     R  + +R+ GV PGDR  I   NCP+ I+A  A        V   PLY T
Sbjct: 59  TYAELGKQVRRAAAGLRALGVRPGDRVAIVLPNCPQHIVAFYAVLRLGAVVVEHNPLY-T 117

Query: 136 LGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQ-------- 187
                  F  + A V+I +   +K+   +  L R    L+TIVS  N+ ++         
Sbjct: 118 AHELEHPFEDHGARVAIVW---DKVAPTVERLRRT-TPLETIVS-VNMIAAMPLLQRLAL 172

Query: 188 -------KKEAEELGVSC---FSWEEFLQ---LGTLDCELPPK-KKTNISTIMYTSGTTG 233
                  +K    L         WE  +     G       P+    +++ I+YTSGTTG
Sbjct: 173 RLPIPALRKARAALTGPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTG 232

Query: 234 EPKGVVLTNQAIVAEVLSVDQMFVVTGK-----VCSEEDTYFSFLPLAHIYDQIIETHCI 288
           +PKG  LT++ + A            GK     +    +   + LP+ H Y     T C+
Sbjct: 233 KPKGAQLTHRNLFANAAQ--------GKAWVPGLGDGPERVLAALPMFHAYGL---TLCL 281

Query: 289 HKGCSIG-----FWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKK 343
               SIG         D+  +++ +++  PT   GVP +Y++I              +++
Sbjct: 282 TLAVSIGGELVLLPAPDIDLILDAMKKHPPTWLPGVPPLYEKIA-----------EAAEE 330

Query: 344 LFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIH-VEEF 402
                         +G+              S +R AF        SGA  LP+  VE +
Sbjct: 331 --------------RGVD------------LSGVRNAF--------SGAMALPVSTVELW 356

Query: 403 LRVTSGAPLTQGYGLTESCSGCFTSLADVFNMI------GTVGVPMTTVEARLESVPEMG 456
            ++T G  L +GYGLTE      TS   V N +      G VGVP    E R+   PE  
Sbjct: 357 EKLTGGL-LVEGYGLTE------TSPIIVGNPMSDDRRPGYVGVPFPDTEVRIVD-PE-- 406

Query: 457 YDALSSVP---RGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTG 498
            D   ++P    GE+ +RG  +F GY+ RP+ T +  +DGWF TG
Sbjct: 407 -DPDETMPDGEEGELLVRGPQVFKGYWNRPEETAKSFLDGWFRTG 450

Length = 573

>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)

 Score =  128 bits (325), Expect = 3e-32
 Identities = 102/429 (23%), Positives = 159/429 (37%), Gaps = 78/429 (18%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           LTY E+     R  + + +RG   GD   +   N  E+ +   A  S             
Sbjct: 33  LTYAELERLVRRLAAGLAARGGRKGDVVLLLSPNSLEFPVVFLAVLSAGAVVTTANPLYT 92

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
              +   +  +   +A         +   L    L L+ +V                  S
Sbjct: 93  PAEIAKQVKDSGAKLAITT----SELAEKLAS--LALEPVVLLD----------SADDGS 136

Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV 257
               +  L     +  +   K+ +++ + Y+SGTTG  KGV+LT++ ++A   +V Q+  
Sbjct: 137 AAIDDL-LFADEPEPPVVVIKQDDVAALPYSSGTTGRSKGVMLTHRNLIA---NVAQLVA 192

Query: 258 VTGKVCSEEDTYFSFLPLAHIYD-QIIETHCIHKGCSI----GFWRGDVRYLMEDIQELK 312
             G     ED     LP+ HIY   +I    +  G ++     F   D+   +  I++ K
Sbjct: 193 GEGPNFDREDVTLCVLPMFHIYGLTVILLALLRLGATVVVMPRF---DLEKFLAAIEKYK 249

Query: 313 PTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSL 372
            T    VP +                AL K                        P++D  
Sbjct: 250 VTHLPVVPPIV--------------LALVKH-----------------------PIVDKY 272

Query: 373 VFSKIREAFGGRLQAMLSGAAPLPIHVEE-FLRVTSGAPLTQGYGLTESCSGCFTSLADV 431
             S         L+ + SGAAPL   + E F     G  L QGYG+TES           
Sbjct: 273 DLSS--------LKQIGSGAAPLGKELAEAFRARFPGVELGQGYGMTESSPVTTMCPVPE 324

Query: 432 FNM-IGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI 490
            +   G+VG  +  VEA++   PE G ++L     GE+ +RG  +  GY   P+ T E I
Sbjct: 325 KDPKPGSVGRLVPNVEAKIVD-PETG-ESLPPNQPGELWVRGPQVMKGYLNNPEATAETI 382

Query: 491 V-DGWFHTG 498
             DGW HTG
Sbjct: 383 DKDGWLHTG 391

4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504

>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I

 Score =  124 bits (314), Expect = 7e-32
 Identities = 76/288 (26%), Positives = 118/288 (40%), Gaps = 69/288 (23%)

Query: 221 NISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAH--- 277
           + + I+YTSGTTG+PKGVVL+++ ++A   ++ Q   +T     E D   S LPL H   
Sbjct: 1   DPAFILYTSGTTGKPKGVVLSHRNLLANAQALAQAIGLT-----EGDVLLSVLPLFHVVG 55

Query: 278 ----IYDQIIE--THCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGIS 331
               +   ++   T  +++G             +E I++ + T+  GVP +YD       
Sbjct: 56  GGSGLLGALLAGGTVVLYEG------FPFPLSFLELIEQYRVTVLFGVPTLYDA------ 103

Query: 332 NKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSG 391
                                               L  +        +    L+ ++SG
Sbjct: 104 ------------------------------------LAKAAEDRGYDLS---SLRLLISG 124

Query: 392 AAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLES 451
             PL   + E      GAP+ +GYGLTE+     T+        GTVG P+  VE R+  
Sbjct: 125 GEPLSPELLERFEERPGAPILEGYGLTETSVVTSTNPDSELKKPGTVGRPVPGVEVRV-- 182

Query: 452 VPEMGYDALSSVPRGEICLRGNTLFSGYYKR-PDLTEEVIVDGWFHTG 498
           V E G   L     GE+ +RG  +  GY+   P+ T     DGW+ TG
Sbjct: 183 VDEEG-KPLPPGEVGELVVRGPWVMKGYWNNPPETTAAATEDGWYRTG 229

This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338

>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

 Score =  127 bits (321), Expect = 2e-31
 Identities = 89/435 (20%), Positives = 143/435 (32%), Gaps = 88/435 (20%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           LTY ++     R  +A++  G   GDR  IY  N PE +IA+ A          +   L 
Sbjct: 41  LTYGDLRREVARLANALKDLGGVKGDRVAIYMPNSPEAVIALLATARIGAIPAVVSPGLS 100

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANV--SSSQKKEAEELG 195
           A AV   I      +    +                 K I    +     S       LG
Sbjct: 101 AEAVADRIADLGPKVLIADD-------GTFRN----GKEIALLEDADAVLSSVVVVPRLG 149

Query: 196 VSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQM 255
                ++E ++  +   E  P    +   ++YTSGTTG+PKG+V ++   + E       
Sbjct: 150 ---LWYDEAVEKASEKFEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRL-TAK 205

Query: 256 FVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCI----HKGCSIGFWRGDVRY----LMED 307
           F          D +++      IY      + +      G +   + G   Y    L E 
Sbjct: 206 FHGDLL---PGDRFWNSSDPGWIYGL---WYSVFSPLASGATTVLYDGRPFYSPERLWEA 259

Query: 308 IQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAP 367
           +++ K T+F   P    R+                             MK G+       
Sbjct: 260 LEKYKVTIFGTSPTFLRRL-----------------------------MKLGLG------ 284

Query: 368 LLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTS 427
             +    S +R         + S   PL     E+     G  +   YG TE+  G    
Sbjct: 285 --EPYDLSSLR--------VLGSAGEPLNPEAFEWFYSALGVWILDIYGQTETGMGFIAG 334

Query: 428 LADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVP--RGEICLRGNT--LFSGYYKRP 483
              V N  G+ G+P+     R         D  + VP   GE+ +R     +   Y+  P
Sbjct: 335 RPPVKN--GSSGLPLPGYAVRRV------DDEGNPVPPGVGELVVRLPWPGMALTYWNDP 386

Query: 484 DLTEEVIVDGWFHTG 498
           +  +E     W+ TG
Sbjct: 387 ERYKEAYFGRWYRTG 401

Length = 528

>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS)

 Score =  125 bits (315), Expect = 3e-31
 Identities = 87/287 (30%), Positives = 123/287 (42%), Gaps = 65/287 (22%)

Query: 221 NISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD 280
           + + I+YTSGTTG PKGVVLT+  + A   ++ + +  T       D     LPL H++ 
Sbjct: 89  DPALIIYTSGTTGRPKGVVLTHGNLAANARALVEAWRWT-----ASDVLLHALPLHHVHG 143

Query: 281 QIIETHCIH-KGCSIGFW-RGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGG 338
                HC    G S+ F  R D +         + T+F GVP +Y R             
Sbjct: 144 LFNALHCPLWAGASVEFLPRFDPQERDALRLLPRITVFMGVPTIYTR------------- 190

Query: 339 ALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIH 398
                                        LL+   F     A    L+  +SG+A LP+ 
Sbjct: 191 -----------------------------LLEHYEFDDAAAAAARNLRLFVSGSAALPVP 221

Query: 399 V-EEFLRVTSGAPLTQGYGLTESCSGCFTSLA-----DVFNMIGTVGVPMTTVEARLESV 452
           V E +   T G  L + YG+TE      T +A     D     GTVG+P+  VE R+  V
Sbjct: 222 VLERWEERT-GHTLLERYGMTE------TGMALSNPLDGERRPGTVGLPLPGVEVRI--V 272

Query: 453 PEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV-DGWFHTG 498
            E G + L++   GEI +RG  +FS Y+ +P+ T E    DGWF TG
Sbjct: 273 DEDGGEPLAAGEVGEIQVRGPNVFSEYWNKPEATAEAFTEDGWFKTG 319

MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430

>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis

 Score =  126 bits (318), Expect = 3e-31
 Identities = 120/454 (26%), Positives = 170/454 (37%), Gaps = 112/454 (24%)

Query: 79  TYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA----CNSQAITYVPLYD 134
           TY+E YD   R  SA+   G+  GD   +   N P     +EA      + A+  VPL  
Sbjct: 31  TYRETYDRCRRLASALSKLGIGKGDVVAVLAPNTPA---MLEAHFGVPMAGAV-LVPLNT 86

Query: 135 TLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEEL 194
            L A+ + FI+NH+E  + FV +  +      L    L  K I+    +  S   E  E 
Sbjct: 87  RLDADDIAFILNHSEAKVLFVDQEFLSLAEEALAL--LSTKEIIDTEIIVISPAAEDSEE 144

Query: 195 GVSCFSWEEFLQLGTLD-CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVD 253
           G     +E+ L  G  D   +PP  + +  ++ YTSGTTG PKGVV T++      L   
Sbjct: 145 G----DYEDLLAGGDPDPLPIPPDDEWDPISLNYTSGTTGNPKGVVYTHRGAYLNALGNV 200

Query: 254 QMFVVTGKVCSEEDTYFSFLPLAHI--------YDQIIETH-CIHKGCSIGFWRGDVRY- 303
             + +          Y   LP+ H            +  TH C+ K          V   
Sbjct: 201 IEWGMPD-----RPVYLWTLPMFHCNGWCFPWAITAVGGTHVCLRK----------VDAP 245

Query: 304 -LMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQ 362
            + + I++ K T   G P V                                NM    P+
Sbjct: 246 AIYDLIEKHKVTHLCGAPTVL-------------------------------NMLANAPE 274

Query: 363 NKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESC 421
               P                 ++ M +GA P P  V    ++   G  +T  YGLTE  
Sbjct: 275 ADKLP-------------LPRPVRVMTAGAPP-PPAV--IKKMEELGFEVTHVYGLTE-T 317

Query: 422 SGCFT-----------SLADVFNMIGTVGVPMTTVEARLESV-PEMGYDALSSVPR---- 465
            G  T              +   +    GV    +E  ++ V PE   D    VPR    
Sbjct: 318 YGPITVCEWKPEWDALPAEERARLKARQGVRYVGLEE-VDVVDPETMKD----VPRDGKT 372

Query: 466 -GEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTG 498
            GEI +RGNT+  GYYK P+ TEE    GWFH+G
Sbjct: 373 IGEIVMRGNTVMKGYYKNPEATEEAFAGGWFHSG 406

This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520

>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE)

 Score =  119 bits (301), Expect = 2e-29
 Identities = 98/435 (22%), Positives = 146/435 (33%), Gaps = 157/435 (36%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           LT+QE+     +    + + GV  GDR  +   N  E+++   A              L 
Sbjct: 2   LTFQELDQRVSQLAEQLAALGVRRGDRVALLAKNSIEFLLLFLAL-------------LR 48

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
             AV   +N                    LP+                      EE    
Sbjct: 49  LGAVVLPLNPR------------------LPQ----------------------EE---- 64

Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV 257
               ++ L     D +         +TI++TSG+TG+PK VV T    +A      +   
Sbjct: 65  ---LQQQLADLQPDLD-------RPATIIFTSGSTGKPKAVVHTWGNHLASARGSAENLG 114

Query: 258 VTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG-------------DVRYL 304
           +T      +D +   LPL H+            G +I   R              D   +
Sbjct: 115 LT-----PDDNWLLSLPLFHV-----------SGLAI-VMRSLLAGGALVLPDKFDAEAI 157

Query: 305 MEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNK 364
            E ++    T  S VP    R+       + S GA                       + 
Sbjct: 158 AEALENHGVTHISLVPTQLQRL-------LESLGA-------------------RWLSS- 190

Query: 365 AAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGC 424
                               L+A+L G AP+P  + E  R   G PL   YG+TE+ S  
Sbjct: 191 --------------------LRAVLLGGAPIPPSLLEQAR-QRGIPLYPTYGMTETASQV 229

Query: 425 FTSLADVF-NMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRP 483
            T   D F   +G+VG P+   E R+ +  +           GEI +RG +LF GY  + 
Sbjct: 230 ATLKPDDFLAKLGSVGKPLPGRELRIVNPQD-----------GEILVRGPSLFLGYLPQG 278

Query: 484 DLTEEVIVDGWFHTG 498
            LT  +  DGWFHTG
Sbjct: 279 GLTPPLDEDGWFHTG 293

O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407

>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated

 Score =  118 bits (296), Expect = 2e-28
 Identities = 113/441 (25%), Positives = 186/441 (42%), Gaps = 74/441 (16%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA---CNSQAITYVPLYD 134
           +T+   +D   RF + ++  GV  GDR  I   NCP+ +I            +   PLY 
Sbjct: 50  ITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVVQTNPLYT 109

Query: 135 TLGANAVEFIINHAEVSIAFVQE---NKIPSILSCLPRCCLYLKTIVSFANVSSS----- 186
                 +E+ ++ +   +    +    ++ ++ S      + +  I  F     +     
Sbjct: 110 E---RELEYQLHDSGAKVILCLDLVFPRVTNVQSATKIEHVIVTRIADFLPFPKNLLYPF 166

Query: 187 -QKKEAE-----ELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVL 240
            QKK++          +   W    +      E+P   + +++ + YT GTTG PKGV+L
Sbjct: 167 VQKKQSNLVVKVSESETIHLWNSVEKEVNTGVEVPCDPENDLALLQYTGGTTGFPKGVML 226

Query: 241 TNQAIVAEVLSVDQMFVVTGKVCSE-EDTYFSFLPLAHIYDQI-IETHCIHKGCSIGFW- 297
           T++ +V+  L    M V     C E E+     LP  H+Y    +    I +G  +    
Sbjct: 227 THKNLVSNTL----MGVQWLYNCKEGEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIP 282

Query: 298 RGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMK 357
           + D++ + E I++ K T+F G P     IY  + N                         
Sbjct: 283 KFDMKMVFEAIKKHKVTLFPGAPT----IYIALLN------------------------- 313

Query: 358 KGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGL 417
                   +PLL     S IR        A +SG+APLP+ V+E     +G  L +GYGL
Sbjct: 314 --------SPLLKEYDISSIR--------ACISGSAPLPVEVQEKFETVTGGKLVEGYGL 357

Query: 418 TESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFS 477
           TES     ++      + G++GVP    EA + S+ E G +AL     GEI ++G  +  
Sbjct: 358 TESSPVTHSNFLWEKRVPGSIGVPWPDTEAMIMSL-ETG-EALPPGEIGEIVVKGPQIMK 415

Query: 478 GYYKRPDLTEEVIVDGWFHTG 498
           GY+ +P+ T  V+ DGW HTG
Sbjct: 416 GYWNKPEETAAVLQDGWLHTG 436

Length = 563

>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase

 Score =  116 bits (292), Expect = 4e-28
 Identities = 91/429 (21%), Positives = 157/429 (36%), Gaps = 113/429 (26%)

Query: 79  TYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGA 138
           T+Q++   A     A++++G+  G R  + G N  E ++ + AC             L  
Sbjct: 1   TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHAC-------------LLL 47

Query: 139 NAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSC 198
            A   ++N        + EN+  + L  L          V               L  S 
Sbjct: 48  GAEIAMLNTR------LTENERTNQLEDLD---------VQLL------------LTDSL 80

Query: 199 FSWEEFLQLGTLDCELPPKKKTNIS---------TIMYTSGTTGEPKGVVLTNQAIVAEV 249
              ++F        E   + +T++S         T+M+TSGTTG+PK V  T +   A  
Sbjct: 81  LEEKDFQADSLDRIEAAGRYETSLSASFNMDQIATLMFTSGTTGKPKAVPHTFRNHYASA 140

Query: 250 LSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQ 309
           +   +    T     E+D +   LPL HI    I    + +G ++       + L+E I 
Sbjct: 141 VGSKENLGFT-----EDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDKFNQ-LLEMIA 194

Query: 310 ELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLL 369
             + T  S VP   +R+                             + +G          
Sbjct: 195 NERVTHISLVPTQLNRL-----------------------------LDEGGHNE------ 219

Query: 370 DSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLA 429
                          L+ +L G + +P  + E  +   G P+   YG+TE+CS   T+  
Sbjct: 220 --------------NLRKILLGGSAIPAPLIEEAQ-QYGLPIYLSYGMTETCSQVTTATP 264

Query: 430 DVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEV 489
           ++ +    VG P+   E +++   + G+        GEI ++G  L  GY  + +LT   
Sbjct: 265 EMLHARPDVGRPLAGREIKIKVDNKEGH--------GEIMVKGANLMKGYLYQGELTPAF 316

Query: 490 IVDGWFHTG 498
              GWF+TG
Sbjct: 317 EQQGWFNTG 325

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436

>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated

 Score =  112 bits (281), Expect = 1e-26
 Identities = 93/435 (21%), Positives = 161/435 (37%), Gaps = 100/435 (22%)

Query: 78  LTYQEVYDAAIRFGSAMRSR-GVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTL 136
           +TY+++++   +  + +     V  G+R  I   N  E+I+ + A        VPL   L
Sbjct: 28  MTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECIAVPLNIRL 87

Query: 137 GANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSS-QKKEAEELG 195
             N + F +  +  ++ FV++                     +F N++ S QK    +  
Sbjct: 88  TENELIFQLKDSGTTVLFVEK---------------------TFQNMALSMQKVSYVQRV 126

Query: 196 VSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAI----VAEVLS 251
           +S  S +E       +     +  + I  I YTSGTTG+PKG VLT + +    +    +
Sbjct: 127 ISITSLKEIEDRKIDNFVEKNESASFI--ICYTSGTTGKPKGAVLTQENMFWNALNNTFA 184

Query: 252 VDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIET--HCIHKGCSIGFWRGDVRYLMEDIQ 309
           +D          +  D     LPL HI    +         G  I   + +    +  I+
Sbjct: 185 ID---------LTMHDRSIVLLPLFHIGGIGLFAFPTLFAGGVIIVPRKFEPTKALSMIE 235

Query: 310 ELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLL 369
           + K T+  GVP ++  +                                           
Sbjct: 236 KHKVTVVMGVPTIHQAL-------------------------------------INCSKF 258

Query: 370 DSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLR--VTSGAPLTQGYGLTESCSGCFTS 427
           ++     +R  +        +G AP P   EE +R  +  G    QG+G+TE+    F  
Sbjct: 259 ETTNLQSVRWFY--------NGGAPCP---EELMREFIDRGFLFGQGFGMTETSPTVFML 307

Query: 428 LADVF-NMIGTVGVPMTTVEARLESVPEMGYDALSSVPRG---EICLRGNTLFSGYYKRP 483
             +     +G++G P+   +  L        +  + V  G   E+ +RG  +   Y+ RP
Sbjct: 308 SEEDARRKVGSIGKPVLFCDYELID------ENKNKVEVGEVGELLIRGPNVMKEYWNRP 361

Query: 484 DLTEEVIVDGWFHTG 498
           D TEE I DGW  TG
Sbjct: 362 DATEETIQDGWLCTG 376

Length = 496

>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional

 Score =  111 bits (279), Expect = 3e-26
 Identities = 109/428 (25%), Positives = 165/428 (38%), Gaps = 97/428 (22%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           +T+ E+++A +     + + GV  GDR  +   N  E I+ + A        V L   L 
Sbjct: 28  VTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQLGAVAVLLNTRLS 87

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
              + + ++ AEV      ++             L     V FA + +  K+EAE     
Sbjct: 88  REELLWQLDDAEVKCLITDDDFEAK---------LIPGISVKFAELMNGPKEEAEIQ--- 135

Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLT--NQAIVAEVLSVDQM 255
               EEF     LD          ++TIMYTSGTTG+PKGV+ T  N    A V S   +
Sbjct: 136 ----EEF----DLD---------EVATIMYTSGTTGKPKGVIQTYGNHWWSA-VGSALNL 177

Query: 256 FVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSI----GFWRGDVRYLMEDIQEL 311
            +      +E+D + + +P+ HI    I    +  G  +     F   D   + + +Q  
Sbjct: 178 GL------TEDDCWLAAVPIFHISGLSILMRSVIYGMRVVLVEKF---DAEKINKLLQTG 228

Query: 312 KPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDS 371
             T+ S V  +  R              L ++L E  Y      M           LL  
Sbjct: 229 GVTIISVVSTMLQR--------------LLERLGEGTYPSSFRCM-----------LL-- 261

Query: 372 LVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFT-SLAD 430
                     GG       G AP P+  +   +   G P+ Q YG+TE+ S   T S  D
Sbjct: 262 ----------GG-------GPAPKPLLEQCKEK---GIPVYQSYGMTETASQIVTLSPED 301

Query: 431 VFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI 490
               +G+ G P+   E ++E         +     GEI ++G  +  GY  R D T E  
Sbjct: 302 ALTKLGSAGKPLFPCELKIEK----DGVVVPPFEEGEIVVKGPNVTKGYLNREDATRETF 357

Query: 491 VDGWFHTG 498
            DGWF TG
Sbjct: 358 QDGWFKTG 365

Length = 483

>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated

 Score =  109 bits (275), Expect = 9e-26
 Identities = 82/286 (28%), Positives = 121/286 (42%), Gaps = 75/286 (26%)

Query: 225 IMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIE 284
           I+YTSGTTG PKGVVL+ +AI A++ ++ + +  T      +D     LPL H++  ++ 
Sbjct: 133 IVYTSGTTGPPKGVVLSRRAIAADLDALAEAWQWTA-----DDVLVHGLPLFHVHGLVLG 187

Query: 285 THCIHKGCSIGFWR--GDVRYLMEDIQE-------LKPTMFSGVPRVYDRIYTGISNKIS 335
                    +G  R      +      E          T++ GVP V+ RI    +    
Sbjct: 188 V--------LGPLRIGNRFVHTGRPTPEAYAQALSEGGTLYFGVPTVWSRI----AADPE 235

Query: 336 SGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPL 395
           +  AL                                         G RL  ++SG+A L
Sbjct: 236 AARALR----------------------------------------GARL--LVSGSAAL 253

Query: 396 PIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARL--ESVP 453
           P+ V + L   +G    + YG+TE+     ++ AD     G VG+P+  VE RL  E   
Sbjct: 254 PVPVFDRLAALTGHRPVERYGMTETLITL-STRADGERRPGWVGLPLAGVETRLVDEDGG 312

Query: 454 EMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV-DGWFHTG 498
            + +D   +V  GE+ +RG TLF GY  RPD T      DGWF TG
Sbjct: 313 PVPHDG-ETV--GELQVRGPTLFDGYLNRPDATAAAFTADGWFRTG 355

Length = 471

>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated

 Score =  108 bits (271), Expect = 3e-25
 Identities = 105/442 (23%), Positives = 160/442 (36%), Gaps = 118/442 (26%)

Query: 77  WLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTL 136
           W TY E+     R  + +R RG   G+R  +   N    +    AC      YVPL   L
Sbjct: 23  W-TYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIYVPLNWRL 81

Query: 137 GANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGV 196
            A+ ++ ++  AE     +  +   +                  A   +S          
Sbjct: 82  SASELDALLQDAEP--RLLLGDDAVAAGRTDV---------EDLAAFIASADALEPADTP 130

Query: 197 SCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMF 256
           S                +PP++   +S I++TSGT+G+PKGV+L+ + +     +    F
Sbjct: 131 S----------------IPPER---VSLILFTSGTSGQPKGVMLSERNLQQTAHN----F 167

Query: 257 VVTGKVCSEEDTYFSFL---PLAHIYDQI--IETHCIHKGC---SIGF-------WRGDV 301
            V G+V    D + SFL   P+ HI   I  +       G    S GF         GD 
Sbjct: 168 GVLGRV----DAHSSFLCDAPMFHIIGLITSVRPVLAVGGSILVSNGFEPKRTLGRLGD- 222

Query: 302 RYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMP 361
                    L  T +  VP++                                   +  P
Sbjct: 223 -------PALGITHYFCVPQMAQAF-------------------------------RAQP 244

Query: 362 QNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLR--VTSGAPLTQGYGLTE 419
              AA L                L A+ +G AP   H  E +   +  G P+  G+G++E
Sbjct: 245 GFDAAAL--------------RHLTALFTGGAP---HAAEDILGWLDDGIPMVDGFGMSE 287

Query: 420 SCS--GCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFS 477
           + +  G       +    G  G+P  TV+ R+  V + G D  + VP GE+ LRG  L  
Sbjct: 288 AGTVFGMSVDCDVIRAKAGAAGIPTPTVQTRV--VDDQGNDCPAGVP-GELLLRGPNLSP 344

Query: 478 GYYKRPDLTEEVIV-DGWFHTG 498
           GY++RP  T      DGWF TG
Sbjct: 345 GYWRRPQATARAFTGDGWFRTG 366

Length = 488

>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis

 Score =  104 bits (262), Expect = 1e-24
 Identities = 76/288 (26%), Positives = 116/288 (40%), Gaps = 78/288 (27%)

Query: 225 IMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIE 284
           I++TSGTTG PKGV LT++ ++A   ++ +   +T       D   + +PL HI+  I+ 
Sbjct: 7   ILHTSGTTGRPKGVPLTHKNLLASARNIAKSHKLT-----PSDRCLNVMPLFHIHGLIVS 61

Query: 285 T-HCIHKGCSI---------GFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKI 334
               +  G S+          FW        +DI + + T +S VP              
Sbjct: 62  LLATLLAGGSVVCPPKFSASKFW--------DDIAKYRVTWYSAVP-------------- 99

Query: 335 SSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAP 394
                + + L + A         K  P          L F  IR           S +AP
Sbjct: 100 ----TIHQILLKTA---------KPNPGKPPP----RLRF--IR-----------SASAP 129

Query: 395 LPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTS-LADVFNMIGTVGVPMTTVEARLESVP 453
           LP  V + L    G P+ + YG+TE+     ++ L  +    G+VG P   VE  +    
Sbjct: 130 LPPAVLDRLEKRFGVPVLEAYGMTEAAHQIASNPLPPLVRKPGSVGRP-AGVEVAI---- 184

Query: 454 EMGYDALSSVP---RGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTG 498
            +  D    +P    GEI +RG  + +GY   P+   E   DGWF TG
Sbjct: 185 -LD-DDGRPLPPGQEGEIVIRGPNVTAGYLNNPEANREAFRDGWFRTG 230

FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345

>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas)

 Score =  100 bits (251), Expect = 1e-22
 Identities = 68/294 (23%), Positives = 107/294 (36%), Gaps = 68/294 (23%)

Query: 214 LPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFL 273
           L   K  + + I++TSG+ G PKGVVL+++ ++A +  +  +        + ED     L
Sbjct: 139 LAGAKPDDPAVILFTSGSEGLPKGVVLSHRNLLANIDQIAAVID-----LNTEDVLLGAL 193

Query: 274 PLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELK------PTMFSGVPR-VYDRI 326
           PL H +           G ++          +  +  L+      P     +   + D  
Sbjct: 194 PLFHAF-----------GLTVTLL-------LPLLTGLRVVYYPNPLDAKKIAELIRDYK 235

Query: 327 YTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQ 386
            T +              F         N                  FS +R        
Sbjct: 236 ATIL---------CGTPTF---LRGYARNAHPED-------------FSSLRLVV----- 265

Query: 387 AMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVE 446
              +GA  LP    E      G  + +GYG TE CS   +    + N  GTVG P+  +E
Sbjct: 266 ---AGAEKLPEATRELFEEKFGIRILEGYGATE-CSPVISVNTPMGNKPGTVGRPLPGIE 321

Query: 447 ARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV--DGWFHTG 498
            R+ S     ++ L     G + +RG  + SGY    + T EV V  DGW+ TG
Sbjct: 322 VRIVSPE--THEELPIGEGGLLLVRGPNVMSGYLNNEEKTSEVEVLGDGWYDTG 373

Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489

>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional

 Score = 99.6 bits (248), Expect = 4e-22
 Identities = 76/286 (26%), Positives = 129/286 (45%), Gaps = 60/286 (20%)

Query: 221 NISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD 280
           +I+ + YT GTTG  KG +LT++ +VA +    Q    TGK+    +   + LPL HI+ 
Sbjct: 209 DIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGKLEEGCEVVITALPLYHIFA 268

Query: 281 QIIETHCIHK--GCS--IGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISS 336
                    K  GC+  I   R D+   ++++++ + T F+GV    + ++ G+ N    
Sbjct: 269 LTANGLVFMKIGGCNHLISNPR-DMPGFVKELKKTRFTAFTGV----NTLFNGLLN---- 319

Query: 337 GGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLP 396
                                         P  D + FS ++   GG +    S A    
Sbjct: 320 -----------------------------TPGFDQIDFSSLKMTLGGGMAVQRSVA---- 346

Query: 397 IHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMG 456
              E + +VT G  L + YGLTE+      +   +    G++G+P+ + +A ++      
Sbjct: 347 ---ERWKQVT-GLTLVEAYGLTETSPAACINPLTLKEYNGSIGLPIPSTDACIKD----- 397

Query: 457 YDALSSVPRGEI---CLRGNTLFSGYYKRPDLTEEVI-VDGWFHTG 498
            DA + +  GEI   C++G  +  GY+KRP+ T +V+  DGW HTG
Sbjct: 398 -DAGTVLAIGEIGELCIKGPQVMKGYWKRPEETAKVMDADGWLHTG 442

Length = 560

>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase)

 Score = 96.5 bits (241), Expect = 2e-21
 Identities = 81/282 (28%), Positives = 111/282 (39%), Gaps = 66/282 (23%)

Query: 225 IMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHI--YDQI 282
           ++YTSGTTGEPKGV+ T+  ++AEV S  +   +T      +D      PLAHI  +   
Sbjct: 98  LLYTSGTTGEPKGVMHTHNTLLAEVRSYVERLGLT-----PDDVVLMPSPLAHITGFLYG 152

Query: 283 IETHCIHKGCS-IGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALS 341
           +E   +  G + +   R D    +E I+E   T   G                       
Sbjct: 153 LEL-PLLLGATVVLQDRWDPARALELIREHGVTFTMGAT--------------------- 190

Query: 342 KKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLP-IHVE 400
                F  +  L         + A P L SL             +  L G AP+P     
Sbjct: 191 ----PFLAD--LLAA-----ADAAGPDLPSL-------------RVFLCGGAPVPRELAR 226

Query: 401 EFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMI-GTVGVPMTTVEARLESVPEMGYDA 459
                  GA + + YG+TE       +  D  +    T G P+  VE R+  V + G D 
Sbjct: 227 RAAEAL-GAKVVRAYGMTEVPLVTVGTPDDPDDKRAATDGRPVPGVEVRI--VDDDGND- 282

Query: 460 LSSVPR---GEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTG 498
              VP    GE+ +RG  LF GY   PD TE    DGWF TG
Sbjct: 283 ---VPPGEEGELQVRGPQLFLGYLDPPDNTEAFTDDGWFRTG 321

Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437

>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase)

 Score = 96.2 bits (240), Expect = 3e-21
 Identities = 92/438 (21%), Positives = 148/438 (33%), Gaps = 96/438 (21%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           LTY E+ +   R+G+A+R  G+   +R  +   + PE+  A           VP+   L 
Sbjct: 31  LTYGELQEEVNRWGNALRELGIERENRVLLILLDTPEFPTAFWGAIKIGAVPVPINTLLT 90

Query: 138 ANAVEFIINHAEVSIAFVQE---NKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEEL 194
            +   + +N +   +  + E     +   L   P    +L+ ++               L
Sbjct: 91  PDDYRYYLNDSRARVLVISEELWEVLKPALQKDP----HLRHVI------VVGGAGPGAL 140

Query: 195 GVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAI-VAEVLSVD 253
                S+ + +     + E       +++  +Y+SG+TG PKGVV  +  + V       
Sbjct: 141 -----SYAQLIATAAEELEAAATSADDMAFWLYSSGSTGRPKGVVHLHHDMLVTAEAYAK 195

Query: 254 QMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLM-------- 305
            +  +T     E+D  FS   L   Y        +  G       G    LM        
Sbjct: 196 NVLGIT-----EDDVVFSAAKLFFAYG-------LGNGLYFPLSVGATTVLMPERPTPDA 243

Query: 306 --EDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQN 363
               I+  KPT+F GVP +Y                                    M   
Sbjct: 244 VFATIERYKPTVFFGVPTLY----------------------------------AAMLAA 269

Query: 364 KAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSG 423
              P  D    S +R          +S    LP  +    +   G  +  G G TE    
Sbjct: 270 PEKPERD---LSSLR--------LCVSAGEALPAEIGYRWKELFGLEILDGIGSTEMLHI 318

Query: 424 CFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEI---CLRGNTLFSGYY 480
             ++        GT G P+   E +L  V E G      V  GEI    +RG++  +GY+
Sbjct: 319 FLSNRPGAVKY-GTSGKPVPGYEVKL--VDEDG----EEVADGEIGELWVRGDSSAAGYW 371

Query: 481 KRPDLTEEVIVDGWFHTG 498
            R + T E  V  W  TG
Sbjct: 372 NRREKTRETFVGEWTRTG 389

Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506

>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases

 Score = 93.4 bits (233), Expect = 2e-20
 Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 3/88 (3%)

Query: 73  GPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNS-QAITYVP 131
           G +  +T+ E+ +   R  + + + GV PGDR  I   N PEW+IA  A  +  A+  VP
Sbjct: 1   GIWQTITWAELAERVRRLAAGLIALGVKPGDRVAILAENRPEWVIADLAILAAGAVP-VP 59

Query: 132 LYDTLGANAVEFIINHAEVSIAFVQENK 159
           +Y T     V +I+N +   + FV E+K
Sbjct: 60  IYPTSSPEEVAYILNDSGARVVFV-EDK 86

This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456

>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional

 Score = 92.9 bits (231), Expect = 5e-20
 Identities = 115/466 (24%), Positives = 176/466 (37%), Gaps = 123/466 (26%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
            T++++ DA  R    + + GV PGDR GI+  NC EW++   A        V +     
Sbjct: 46  YTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFATARIGAILVNINPAYR 105

Query: 138 ANAVEFIINHAEVS-------------IAFVQE------NKIPSILSC--LPRCCLYLKT 176
           A+ +E+ +  + V               A +QE         P  L+C  LP     L+ 
Sbjct: 106 ASELEYALGQSGVRWVICADAFKTSDYHAMLQELLPGLAEGQPGALACERLPE----LRG 161

Query: 177 IVSFANVSSS-----QKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGT 231
           +VS A           + +A    VS  +  E  +  +LD + P         I YTSGT
Sbjct: 162 VVSLAPAPPPGFLAWHELQARGETVSREALAE--RQASLDRDDP-------INIQYTSGT 212

Query: 232 TGEPKGVVLT------NQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIET 285
           TG PKG  L+      N   VAE L +           +E D     +PL H +  ++  
Sbjct: 213 TGFPKGATLSHHNILNNGYFVAESLGL-----------TEHDRLCVPVPLYHCFGMVLAN 261

Query: 286 -HCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSK 342
             C+  G  + +     D    ++ ++E + T   GVP ++                   
Sbjct: 262 LGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMF------------------- 302

Query: 343 KLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEF 402
            + E  +                 P   +   S +R          +   AP PI V   
Sbjct: 303 -IAELDH-----------------PQRGNFDLSSLRTG--------IMAGAPCPIEVMR- 335

Query: 403 LRVTSG---APLTQGYGLTESCSGCF-TSLADVFNM-IGTVGVPMTTVEARLESVPEMGY 457
            RV      A +   YG+TE+      T+ AD     + TVG     +E ++        
Sbjct: 336 -RVMDEMHMAEVQIAYGMTETSPVSLQTTAADDLERRVETVGRTQPHLEVKV-------V 387

Query: 458 DAL-SSVPRGEI---CLRGNTLFSGYYKRPDLTEEVI-VDGWFHTG 498
           D   ++VPRGEI   C RG ++  GY+  P+ T E I  DGW HTG
Sbjct: 388 DPDGATVPRGEIGELCTRGYSVMKGYWNNPEATAESIDEDGWMHTG 433

Length = 558

>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 93.1 bits (231), Expect = 6e-20
 Identities = 89/452 (19%), Positives = 140/452 (30%), Gaps = 122/452 (26%)

Query: 72  VGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVP 131
           V     LTY E+   A R    + S GV PG+   I      E ++A+ A       YVP
Sbjct: 247 VRGGQQLTYAELDARANRLARLLISLGVGPGETVAILADRSLELVVALLAVLKAGAAYVP 306

Query: 132 LYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEA 191
           L     A  + +I+  +  ++   Q +     L         L    + + +  +     
Sbjct: 307 LDPLYPAERLAYILEDSRPTLLLTQAH-----LRVDDVGLPGLALDDALSEIPDTDPIPQ 361

Query: 192 EELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLS 251
             LG                          ++ I+YTSG+TG+PKGV + ++A+   +  
Sbjct: 362 ALLG------------------------DALAYIIYTSGSTGQPKGVRIEHRALANLLND 397

Query: 252 VDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGF--------WRGDVRY 303
               F +       +D   +   L+           I      G          + D   
Sbjct: 398 AGARFGLD-----ADDRVLALASLSF----DASVFEIFGALLEGARLVLAPALLQVDPAA 448

Query: 304 LMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQN 363
           L+E ++    T+   VP                                L  +       
Sbjct: 449 LLELLEAQGITVLLLVP-------------------------------LLLRL------- 470

Query: 364 KAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHV--EEFLRVTSGAPLTQGYGLTESC 421
               LL + +   +      RL+ +LSG   LP+ +             L   YG TE  
Sbjct: 471 ----LLLAALAPDLISP-CERLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTE-- 523

Query: 422 SGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGY-----------DALSSVP---RGE 467
                          T+  P   + A LES   +G              L  +P    GE
Sbjct: 524 --------------ATLDAPSFPISAELESRVPIGRPVANTQLYILDQGLRPLPLGVPGE 569

Query: 468 ICLRGNTLFSGYYKRPDLTEE-VIVDGWFHTG 498
           + + G  L  GY  RPDLT E  I    + TG
Sbjct: 570 LYIAGLGLALGYLNRPDLTAERFIALRLYRTG 601

Length = 642

>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase

 Score = 92.4 bits (230), Expect = 6e-20
 Identities = 116/445 (26%), Positives = 174/445 (39%), Gaps = 102/445 (22%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACN---SQAITYVPLYD 134
            TY +V   + R  + +   G+  GD   +   NCPE+++A    +   +   T  P Y 
Sbjct: 51  YTYADVELLSRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAFLGASRRGAVTTTANPFY- 109

Query: 135 TLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEEL 194
                  E I   A+ S A     K+    SC      Y+  +   A          ++ 
Sbjct: 110 ----TPAE-IAKQAKASGA-----KLIITQSC------YVDKLKGLAEDDGVTVVTIDDP 153

Query: 195 GVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQ 254
              C  + E  Q    +         ++  + Y+SGTTG PKGV+LT++ +V    SV Q
Sbjct: 154 PEGCLHFSELTQADENELPEVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVT---SVAQ 210

Query: 255 MFVVTGKV----CSEEDTYFSFLPLAHIYDQIIETHCI-----HKGCSIGFWRG-DVRYL 304
              V G+        +D     LP+ HIY      + +       G +I      ++  L
Sbjct: 211 Q--VDGENPNLYFHSDDVILCVLPMFHIY----SLNSVLLCGLRVGAAILIMPKFEIGAL 264

Query: 305 MEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNK 364
           +E IQ  K T+   VP +                     +   A +              
Sbjct: 265 LELIQRHKVTIAPFVPPI---------------------VLAIAKS-------------- 289

Query: 365 AAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVT-SGAPLTQGYGLTES--- 420
             P+++    S IR         +LSGAAPL   +E+  R     A L QGYG+TE+   
Sbjct: 290 --PVVEKYDLSSIR--------MVLSGAAPLGKELEDAFRAKLPNAVLGQGYGMTEAGPV 339

Query: 421 CSGCFTSLADVFNM-IGTVGVPMTTVE-ARLESV-PEMGYDALSSVPR---GEICLRGNT 474
            + C     + F +  G+ G   T V  A L+ V PE G    +S+PR   GEIC+RG  
Sbjct: 340 LAMCLAFAKEPFPVKSGSCG---TVVRNAELKIVDPETG----ASLPRNQPGEICIRGPQ 392

Query: 475 LFSGYYKRPDLTEEVI-VDGWFHTG 498
           +  GY   P+ T   I  DGW HTG
Sbjct: 393 IMKGYLNDPEATANTIDKDGWLHTG 417

Length = 537

>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated

 Score = 92.4 bits (230), Expect = 8e-20
 Identities = 119/465 (25%), Positives = 183/465 (39%), Gaps = 117/465 (25%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYV---PLY- 133
           +TY E+ + +    + ++SRG+  G R  I   N  ++ +A+ A        V   PLY 
Sbjct: 49  ITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVAIAAVLRAGYVVVNVNPLYT 108

Query: 134 ---------DTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLK-TIVSFANV 183
                    D+ GA A+  + N A      + +  +  ++       L  K  IV+F  V
Sbjct: 109 PRELEHQLKDS-GAEAIVVLENFATTVQQVLAKTAVKHVVVASMGDLLGFKGHIVNF--V 165

Query: 184 SSSQKK--EAEELGVSCFSWEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVL 240
               KK   A  L      + + L  G     +       +++ + YT GTTG  KG  L
Sbjct: 166 VRRVKKMVPAWSLP-GHVRFNDALAEGARQTFKPVKLGPDDVAFLQYTGGTTGVSKGATL 224

Query: 241 TNQAIVAEVLS--------------VDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETH 286
            ++ IVA VL                DQ+  V              LPL HI+     T 
Sbjct: 225 LHRNIVANVLQMEAWLQPAFEKKPRPDQLNFVCA------------LPLYHIFAL---TV 269

Query: 287 CIHKGCSIGFWRGDVRYLMED-------IQELKPTMFSGVPRVYDRIYTGISNKISSGGA 339
           C      +G   G    L+ +       I+ELK       P V + +Y  + N       
Sbjct: 270 C----GLLGMRTGGRNILIPNPRDIPGFIKELKKYQVHIFPAV-NTLYNALLN------- 317

Query: 340 LSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHV 399
                                      P  D L FSK+  A GG + A+    A      
Sbjct: 318 --------------------------NPDFDKLDFSKLIVANGGGM-AVQRPVA------ 344

Query: 400 EEFLRVTSGAPLTQGYGLTES--CSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGY 457
           E +L +T G P+T+GYGL+E+   + C    A  F+  GT+G+P+ + E  +        
Sbjct: 345 ERWLEMT-GCPITEGYGLSETSPVATCNPVDATEFS--GTIGLPLPSTEVSIRD------ 395

Query: 458 DALSSVPRG---EICLRGNTLFSGYYKRPDLTEEVIV-DGWFHTG 498
           D  + +P G   EIC+RG  + +GY+ RPD T +V+  DG+F TG
Sbjct: 396 DDGNDLPLGEPGEICIRGPQVMAGYWNRPDETAKVMTADGFFRTG 440

Length = 557

>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated

 Score = 91.1 bits (227), Expect = 1e-19
 Identities = 49/211 (23%), Positives = 80/211 (37%), Gaps = 35/211 (16%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
            TY E+  A  R  +A+   G+  GDR    G N   + +   AC      +VP+   L 
Sbjct: 37  WTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWLACARAGAVHVPVNFMLT 96

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
              + +I++H+      V     P++                    ++      + L +S
Sbjct: 97  GEELAYILDHSGARAFLVD----PALAPTAE---------------AALALLPVDTLILS 137

Query: 198 CF--------SWEEFLQLGTLDCELPPKKKTNIST---IMYTSGTTGEPKGVVLTNQAIV 246
                      W +F           P  +        I+YTSGT   PKG +LT++A++
Sbjct: 138 LVLGGREAPGGWLDFADWAEAGSVAEPDVELADDDLAQILYTSGTESLPKGAMLTHRALI 197

Query: 247 AEVLSVDQMFVVTGKVCSEEDTYFSFLPLAH 277
           AE +S     +V G + S +D     LPL H
Sbjct: 198 AEYVSC----IVAGDM-SADDIPLHALPLYH 223

Length = 523

>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score = 90.7 bits (226), Expect = 2e-19
 Identities = 61/225 (27%), Positives = 91/225 (40%), Gaps = 35/225 (15%)

Query: 67  VSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQA 126
           VS    G     TY + Y    R  +A+ S GV PGDR      N    +    A     
Sbjct: 15  VSRTPDGSIHRYTYADFYRRVRRLANALESLGVKPGDRVATLAWNTHRHLELYFA----- 69

Query: 127 ITYVPLYDTLGANAV-------------EFIINHAEVSIAFVQENKIPSILSCLPRCCLY 173
              VP     G  AV              +IINHAE  + FV ++ +P + +  PR    
Sbjct: 70  ---VP-----GMGAVLHTLNPRLSPEQIAYIINHAEDKVIFVDDDFLPLLEAIAPRL--- 118

Query: 174 LKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTG 233
             T+ +      +   E     V  +  EE L+  + + E P   +   + + YTSGTTG
Sbjct: 119 -PTVKAVVVYDDADMPETSLPNVYAY--EELLEEESPEYEWPELDENTAAGLCYTSGTTG 175

Query: 234 EPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHI 278
            PKGVV +++++V   L+            SE DT    +P+ H+
Sbjct: 176 NPKGVVYSHRSLVLHTLASAL---PDSLGLSESDTVLPVVPMFHV 217

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517

>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase

 Score = 88.5 bits (220), Expect = 8e-19
 Identities = 63/286 (22%), Positives = 101/286 (35%), Gaps = 71/286 (24%)

Query: 225 IMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIE 284
           I YTSGTTG PKG + T++ ++A   +      +T      +    +FLPL H+      
Sbjct: 89  IPYTSGTTGLPKGCMHTHRTVLATAAASAAWSGLT-----PDSVLLAFLPLFHVAG---M 140

Query: 285 THCIHKGCSIG-----FWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGA 339
              ++     G       R D       I+  + T ++ +                    
Sbjct: 141 QGSMNAPIYTGATLVLLTRWDREAAARAIERYRVTHWTNIV------------------- 181

Query: 340 LSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHV 399
                                       LL      +  +     L+ +  G A LP  V
Sbjct: 182 -----------------------TMVVDLLAHP---RFADYDLSSLKVVGGGGAALPPAV 215

Query: 400 EEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEAR---LESVPEMG 456
            E L+  +G    +GYGLTE+ + C             +G+P+   +AR    E+  E+ 
Sbjct: 216 AERLKALTGLLYEEGYGLTETHT-CTHFNPPDRPKPQCLGIPVFGTDARVIDPETGEELP 274

Query: 457 YDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV----DGWFHTG 498
                    GEI +RG  +F GY+ RP+ T E  +      +F TG
Sbjct: 275 ---PGEE--GEIVVRGPQVFKGYWNRPEATAESFIELDGKRFFRTG 315

The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430

>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated

 Score = 87.5 bits (217), Expect = 2e-18
 Identities = 57/217 (26%), Positives = 89/217 (41%), Gaps = 10/217 (4%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           LTY  + +  +   S +R  G+  G+R  IY     E + AM         +VP+   L 
Sbjct: 26  LTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAGGVFVPINPLLK 85

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
           A  V  I+    V +      ++  +   LP C      I+    V           G  
Sbjct: 86  AEQVAHILADCNVRLLVTSSERLDLLHPALPGCHDLRTLII----VGDPAHASEGHPGEE 141

Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV 257
             SW + L LG  D    P   ++++ I+YTSG+TG PKGVVL+++ +VA   SV     
Sbjct: 142 PASWPKLLALGDAD-PPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYLE 200

Query: 258 VTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSI 294
                   +D   + LPL+  Y     T   + G ++
Sbjct: 201 NR-----PDDRLLAVLPLSFDYGFNQLTTAFYVGATV 232

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517

>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA

 Score = 86.6 bits (214), Expect = 5e-18
 Identities = 75/304 (24%), Positives = 124/304 (40%), Gaps = 54/304 (17%)

Query: 200 SWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVT 259
           ++ +F++      E P     +++ + YT GTTG PKG +LT+  + + V   D     +
Sbjct: 172 TYADFVKGAAAPAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIYDVWGKPS 231

Query: 260 GKVCSEEDTYFSFLPLAHIYD-QIIETHCIHKGCSIGF-WRGDVRYLMEDIQELKPTMFS 317
                + +     LPL HIY   +I    + +G  I    R DV  +  DI+E + T+F 
Sbjct: 232 RATRGDVERVICVLPLFHIYALTVILLRSLRRGDLISLHQRFDVAAVFRDIEEKRATVFP 291

Query: 318 GVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKI 377
           GVP ++  +                                        P L+    S  
Sbjct: 292 GVPTMWIAL-------------------------------------ANDPSLEKRDLSS- 313

Query: 378 REAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGT 437
                  L  + SG APLP+ V  F    +G  L  G+G+TE+CS       +  +  G+
Sbjct: 314 -------LATIGSGGAPLPVEVANFFERKTGLKLKSGWGMTETCSPGTGHPPEGPDKPGS 366

Query: 438 VGVPMTTVEARLESVPEMGYDALSSVPRGEIC---LRGNTLFSGYYKRPDLTEEVIVDGW 494
           +G+ +  +E  + S+     D    +P GE+    +RG  +  GY+ RP+ + E  V   
Sbjct: 367 IGLMLPGIELDVVSLD----DPTKVLPPGEVGELRIRGPNVTRGYWNRPEESAEAFVGDR 422

Query: 495 FHTG 498
           F TG
Sbjct: 423 FLTG 426

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541

>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated

 Score = 85.7 bits (213), Expect = 9e-18
 Identities = 111/461 (24%), Positives = 168/461 (36%), Gaps = 147/461 (31%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
            TY ++  A+ R  + + + GV PGDR  +     PE +    A       ++PL     
Sbjct: 29  YTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLATLRAGAVFLPLNTAYT 88

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
              +++ I  AE           P+++ C P           FA +S    K A   G  
Sbjct: 89  LAELDYFIGDAE-----------PALVVCDPAN---------FAWLS----KIAAAAGAP 124

Query: 198 CFSWEEFLQLGTLDC-----------------ELPPKKKTNISTIMYTSGTTGEPKGVVL 240
                    + TLD                  E  P+   +++ I+YTSGTTG  KG +L
Sbjct: 125 --------HVETLDADGTGSLLEAAAAAPDDFETVPRGADDLAAILYTSGTTGRSKGAML 176

Query: 241 T--NQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCI-HKGCSIGFW 297
           +  N    A  L     F       + +D     LP+ H +   + T+     G S+  +
Sbjct: 177 SHGNLLSNALTLVDYWRF-------TPDDVLIHALPIFHTHGLFVATNVALLAGASM-IF 228

Query: 298 RGDVRYLMEDIQELKP--TMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGN 355
               ++  + +  L P  T+  GVP  Y R                              
Sbjct: 229 LP--KFDPDAVLALMPRATVMMGVPTFYTR------------------------------ 256

Query: 356 MKKGMPQNKAAPLLDSLVFSKIREAFGG-RLQAMLSGAAPLPI--HVEEFLRVTSGAPLT 412
                       LL     +  REA    RL   +SG+APL    H E   R  +G  + 
Sbjct: 257 ------------LLQEPRLT--REAAAHMRL--FISGSAPLLAETHREFQER--TGHAIL 298

Query: 413 QGYGLTESCSGCFTSLADVFNMI-----------GTVGVPMTTVEARLESVPEMGYDALS 461
           + YG+TE+            NM            GTVG P+  V  R+   PE G    +
Sbjct: 299 ERYGMTET------------NMNTSNPYDGERRAGTVGFPLPGVSLRVTD-PETG----A 341

Query: 462 SVPRGEIC---LRGNTLFSGYYKRPDLT-EEVIVDGWFHTG 498
            +P GEI    ++G  +F GY++ P+ T EE   DG+F TG
Sbjct: 342 ELPPGEIGMIEVKGPNVFKGYWRMPEKTAEEFRADGFFITG 382

Length = 504

>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 83.9 bits (208), Expect = 1e-17
 Identities = 66/287 (22%), Positives = 107/287 (37%), Gaps = 73/287 (25%)

Query: 228 TSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIET-H 286
           T GTTG PK    +++  VA       +  +        D   + LPL H+   I+    
Sbjct: 10  TGGTTGAPKLARHSHRNEVANAWMAALLSGLG-----PGDVLLNGLPLFHVGGAIVTGLA 64

Query: 287 CIHKGCSIGF-----WRGD--VRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGA 339
            + +G ++       +R    V    + ++  + T+ S VP V                A
Sbjct: 65  PLARGATVVLPTPSGFRNPAVVANFWKIVERYRVTLLSAVPTVL--------------AA 110

Query: 340 LSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHV 399
           L                          PL D+ + S +R          L+GAAPLP+ V
Sbjct: 111 L-----------------------LQVPLGDADI-SSLR--------YALTGAAPLPVEV 138

Query: 400 EEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPM--TTVE-ARLESVPEMG 456
                  +G P+ +GYG+TE       +        G+VG+ +  T V  A+L++   +G
Sbjct: 139 ARRFEAVTGVPVVEGYGMTEGTGVSAINPRGGPRRPGSVGLRLPYTRVRVAKLDAGGALG 198

Query: 457 YDALSSVPRGEICLRGNTLFSGYYKRPDLTEE-----VIVDGWFHTG 498
            D       G + +RG  +F GY     L +       + DGW +TG
Sbjct: 199 RDCAPGEV-GVLAIRGPNVFPGY-----LNDAHNAGARLEDGWLNTG 239

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359

>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated

 Score = 80.4 bits (199), Expect = 6e-16
 Identities = 69/300 (23%), Positives = 109/300 (36%), Gaps = 73/300 (24%)

Query: 215 PPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLP 274
            P    +++   +T GTTG PK    T+   VA       +  +        DT F  LP
Sbjct: 208 RPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLLGLG-----PGDTVFCGLP 262

Query: 275 LAHIYDQI-IETHCIHKGCSIGF-----WRGD--VRYLMEDIQELKPTMFSGVPRVYDRI 326
           L H+   +      + +G  +       +RG   +    + ++  +    SGVP VY   
Sbjct: 263 LFHVNALLVTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVY--- 319

Query: 327 YTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQ 386
                       AL +                 +P +     + SL ++           
Sbjct: 320 -----------AALLQ-----------------VPVD--GHDISSLRYA----------- 338

Query: 387 AMLSGAAPLPIHV-EEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTV 445
             L GAAPLP+ V   F   T G  + +GYGLTE+      +  D    IG+VG+ +   
Sbjct: 339 --LCGAAPLPVEVFRRFEAAT-GVRIVEGYGLTEATCVSSVNPPDGERRIGSVGLRLPYQ 395

Query: 446 EARLESVPEMGYDALSSVPR--GEICLRGNTLFSGYYKRPDLTEE-----VIVDGWFHTG 498
             R+  + + G           G +C+ G  +FSGY     L         + DGW +TG
Sbjct: 396 RVRVVILDDAGRYLRDCAVDEVGVLCIAGPNVFSGY-----LEAAHNKGLWLEDGWLNTG 450

Length = 632

>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated

 Score = 78.3 bits (193), Expect = 2e-15
 Identities = 73/291 (25%), Positives = 124/291 (42%), Gaps = 73/291 (25%)

Query: 221 NISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD 280
           +++ + YT GTTG  KG +LT++ +VA +L    +  +   +    +   + LPL HIY 
Sbjct: 208 DVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRAL--MGSNLNEGCEILIAPLPLYHIY- 264

Query: 281 QIIETHCIHKGCSIGFWRGDVRYLMED-------IQELKPTMFSGVPRVYDRIYTGISNK 333
                   H  C      G+   L+ +       ++EL    FSG        + G++  
Sbjct: 265 ----AFTFH--CMAMMLIGNHNILISNPRDLPAMVKELGKWKFSG--------FVGLNT- 309

Query: 334 ISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAA 393
                     LF              +  N+A   LD   FS         L+  LSG  
Sbjct: 310 ----------LF------------VALCNNEAFRKLD---FS--------ALKLTLSGGM 336

Query: 394 PLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFN-----MIGTVGVPMTTVEAR 448
            L +   E  +  +G  + +GYG+TE      TS     N      +GT+G+P+ +   +
Sbjct: 337 ALQLATAERWKEVTGCAICEGYGMTE------TSPVVSVNPSQAIQVGTIGIPVPSTLCK 390

Query: 449 LESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTG 498
           +  + + G + L     GE+C++G  +  GY++RP+ T+E++  DGW  TG
Sbjct: 391 V--IDDDGNE-LPLGEVGELCVKGPQVMKGYWQRPEATDEILDSDGWLKTG 438

Length = 562

>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase

 Score = 77.2 bits (191), Expect = 4e-15
 Identities = 88/475 (18%), Positives = 148/475 (31%), Gaps = 145/475 (30%)

Query: 46  WQFFCDSAKRIPNNQML--GGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGD 103
                 +A R P+   +  G R+           LTY+E+  A  R  + + + G+ PGD
Sbjct: 18  GDLLAANAARHPDRTAVVDGPRR-----------LTYRELDAAVDRLAAGLLALGIGPGD 66

Query: 104 RCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSI 163
           R  +   N  E++I   A        V       A+ +      +E + A++  ++    
Sbjct: 67  RVLVQLPNVAEFVILYFALFKLGAIPVLALPAHRAHEIGHFARQSE-AKAYIIADRFSG- 124

Query: 164 LSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNIS 223
                           +A ++    +E  ++           QL                
Sbjct: 125 --------------FDYAALARELLEELPDVA--------LFQL---------------- 146

Query: 224 TIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVV--TGKVC--SEEDTYFSFLPLAHIY 279
               + GTTG PK +  T+          D ++    + + C       Y + LP AH +
Sbjct: 147 ----SGGTTGLPKLIPRTH---------NDYLYSARASAEACGLDPGTVYLAVLPAAHNF 193

Query: 280 DQIIETHCIHKGCSIG-FWRG---------DVRYLMEDIQELKPTMFSGVPRVYDRIYTG 329
                   +     +G    G                 I+  K T  + VP + +     
Sbjct: 194 -------TLSSPGLLGALLAGGTVVLHHPPSPDVAFPLIEREKVTHTALVPALLNLWL-- 244

Query: 330 ISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAML 389
                                               A   D    S         L+ + 
Sbjct: 245 -----------------------------------EAAEWDQADLS--------SLRVIQ 261

Query: 390 SGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMI-GTVGVPMTT-VEA 447
            G APL   +   +    G PL Q +G+ E     +T L D  ++I  T G P++   E 
Sbjct: 262 VGGAPLSPELARRVEERLGCPLQQVFGMAEG-LVNYTRLDDPPDVIMRTQGRPISPADEI 320

Query: 448 RLESVPEMGYDALSSVPRGEI---CLRGNTLFSGYYKRPDLTEEVIV-DGWFHTG 498
           R+  V + G      VP GE+     RG     GYY+ P+        DG++ TG
Sbjct: 321 RI--VDDQGEP----VPPGEVGELLTRGPYTIRGYYRAPEHNARAFTDDGFYRTG 369

2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483

>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes

 Score = 77.0 bits (190), Expect = 4e-15
 Identities = 67/294 (22%), Positives = 100/294 (34%), Gaps = 84/294 (28%)

Query: 222 ISTIMYTSGTTGEPKGVV-------LTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLP 274
           I+  +YTSGTTG+PKGV+          +A   E+L +              D  FS   
Sbjct: 93  IAYWLYTSGTTGKPKGVMHRHRDPLTFAEAFARELLGL-----------QPGDRIFSSSK 141

Query: 275 LAHIYDQIIETHCIHKGCSIGFW------RGDVRYLMEDIQELKPTMFSGVPRVYDRIYT 328
           L   Y      + +      G              +++ +   +PT+  GVP +Y     
Sbjct: 142 LFFAYGLG---NSLLFPLFSGASAVLLPGWPTPEAVLDLLARHRPTVLFGVPALY----- 193

Query: 329 GISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAM 388
                +   GA S  LF                               +R          
Sbjct: 194 ---RALLESGAGSAPLF-----------------------------RSVRLCV------- 214

Query: 389 LSGAAPLPIHVEEFLRVTSGAPLTQGYGLTES----CSGCFTSLADVFNMIGTVGVPMTT 444
            S    LP  + E     +G  +  G G TE      S    +        GT G P+  
Sbjct: 215 -SAGEALPAGLAERWAEATGIEILDGIGSTEVLHIFISNRPGAAR-----PGTTGRPVPG 268

Query: 445 VEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTG 498
            EARL  V E G +  +    G++ +RG +L  GY+  P+ T+  + DGW  TG
Sbjct: 269 YEARL--VDESGREVPAGTV-GDLWVRGPSLAPGYWNLPEKTQRTLRDGWLRTG 319

This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436

>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 75.0 bits (185), Expect = 1e-14
 Identities = 65/292 (22%), Positives = 110/292 (37%), Gaps = 72/292 (24%)

Query: 221 NISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIY- 279
           +++ I+YTSG+TGEPKGV+L+++ + A   S+ Q   +T     E+D   + LP +  Y 
Sbjct: 3   DLAAIIYTSGSTGEPKGVMLSHRNLTAGARSIAQYLELT-----EDDRILAVLPFSFDYG 57

Query: 280 -DQIIETHCIHKGCSIGFWRGDVRYLM-----EDIQELKPTMFSGVPRVYDRIYTGISNK 333
             Q++ T     G  +     + R+       + + + + T F+GVP  +          
Sbjct: 58  LSQLL-TAFRVGGTLV----LESRFAFPRDVLKHLAKERITGFAGVPTTW---------- 102

Query: 334 ISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAA 393
                                              L  L     RE F   L+ + +   
Sbjct: 103 ---------------------------------AQLLRLD-PLAREDF-PSLRYLTNAGG 127

Query: 394 PLP-IHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESV 452
            LP   + +  R    A L   YGLTE+    +    ++     ++G  +  VE  L  V
Sbjct: 128 ALPAKTILQLRRAFPDAKLFSMYGLTEAFRSTYLPPEELDRRPDSIGKAIPNVE--LWVV 185

Query: 453 PEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV------DGWFHTG 498
            E G         GE+  RG  +  GY+  P+ T E +       +   +TG
Sbjct: 186 DEDGNRCAPGEV-GELVHRGANVMKGYWNDPEATAERLRPGPLPGEIVLYTG 236

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350

>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase

 Score = 76.0 bits (187), Expect = 1e-14
 Identities = 105/473 (22%), Positives = 164/473 (34%), Gaps = 121/473 (25%)

Query: 79  TYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDT--- 135
           T+ + Y    R  SA+  R + PG    +   N P           +A   VP+      
Sbjct: 47  TWAQTYQRCRRLASALAKRSIGPGSTVAVIAPNIP--------AMYEAHFGVPMAGAVVN 98

Query: 136 -----LGANAVEFIINHAEVSIAFVQENKIP------SILSCLPRCCLYLKTIVSFANVS 184
                L A  + F++ H++  +  V +           IL+   +       ++   + +
Sbjct: 99  CVNIRLNAPTIAFLLEHSKSEVVMVDQEFFTLAEEALKILAEKKKSSFKPPLLIVIGDPT 158

Query: 185 SSQKKEAEELGVSCFSWEEFLQLGTLDCEL---PPKKKTNISTIMYTSGTTGEPKGVVLT 241
              K     LG     +E+FL+ G  D E    PP  +     + YTSGTT  PKGVVL 
Sbjct: 159 CDPKSLQYALGKGAIEYEKFLETG--DPEFAWKPPADEWQSIALGYTSGTTASPKGVVLH 216

Query: 242 NQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAH----IYDQIIETHCIHKGCSIGFW 297
           ++      LS   ++ +     +E   Y   LP+ H     +   +   C   G +I   
Sbjct: 217 HRGAYLMALSNALIWGM-----NEGAVYLWTLPMFHCNGWCFTWTLAALC---GTNICLR 268

Query: 298 RGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMK 357
           +   + +   I     T F   P V + I                               
Sbjct: 269 QVTAKAIYSAIANYGVTHFCAAPVVLNTIVNA---------------------------- 300

Query: 358 KGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHV----EEFLRVTSGAPLTQ 413
              P+++    L  +V              M +GAAP P  +    E+  RVT    L++
Sbjct: 301 ---PKSETILPLPRVV------------HVMTAGAAPPPSVLFAMSEKGFRVTHTYGLSE 345

Query: 414 GYGLTESCSGC--FTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSS--------- 462
            YG +  C+    + SL                 +ARL +   + Y  L           
Sbjct: 346 TYGPSTVCAWKPEWDSLPPE-------------EQARLNARQGVRYIGLEGLDVVDTKTM 392

Query: 463 --VPR-----GEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTG----KNPWQY 504
             VP      GEI +RGN +  GY K P   EE   +GWFH+G    K+P  Y
Sbjct: 393 KPVPADGKTMGEIVMRGNMVMKGYLKNPKANEEAFANGWFHSGDLGVKHPDGY 445

Length = 567

>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain

 Score = 75.0 bits (185), Expect = 2e-14
 Identities = 44/200 (22%), Positives = 80/200 (40%), Gaps = 29/200 (14%)

Query: 79  TYQEVYDAAIRFGSAMRSR-GVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           TY+E+ + A R    +R+  GV PGDR  +      E ++A+ A       YVPL     
Sbjct: 1   TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYP 60

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
           A  + FI+  A   +       + S L+ L    + L  +   A   +      +     
Sbjct: 61  AERLAFILEDAGARLLLTDS-ALASRLAGLVLPVILLDPLELAALDDAPAPPPPDAPSGP 119

Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV 257
                                  +++ ++YTSG+TG PKGVV+T++++V  +  + + + 
Sbjct: 120 ----------------------DDLAYVIYTSGSTGRPKGVVVTHRSLVNLLAWLARRYG 157

Query: 258 VTGKVCSEEDTYFSFLPLAH 277
           +       +D    F  L+ 
Sbjct: 158 L-----DPDDRVLQFASLSF 172

This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409

>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like

 Score = 73.7 bits (181), Expect = 6e-14
 Identities = 76/299 (25%), Positives = 126/299 (42%), Gaps = 65/299 (21%)

Query: 212 CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV----VTGKVCSEED 267
              P  K+ +++ IMY+SGTTG  KGVVLT++ ++A V    ++FV       +    ++
Sbjct: 190 VPKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMV----ELFVRFEASQYEYPGSDN 245

Query: 268 TYFSFLPLAHIYD-QIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDR 325
            Y + LP+ HIY   +     +  G +I   R  D   +++ I   K T F  VP +   
Sbjct: 246 VYLAALPMFHIYGLSLFVVGLLSLGSTIVVMRRFDASDMVKVIDRFKVTHFPVVPPIL-- 303

Query: 326 IYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRL 385
                        AL+KK              KG+       +L SL             
Sbjct: 304 ------------MALTKK-------------AKGV----CGEVLKSLK------------ 322

Query: 386 QAMLSGAAPLPIH-VEEFLRVTSGAPLTQGYGLTESCS-GCFTSLADVFNMIGTVGVPMT 443
             +  GAAPL    +++F++        QGYG+TES + G      +  +   +VG+   
Sbjct: 323 -QVSCGAAPLSGKFIQDFVQTLPHVDFIQGYGMTESTAVGTRGFNTEKLSKYSSVGLLAP 381

Query: 444 TVEARLESVPEMGYDALSSVP---RGEICLRGNTLFSGYYKRPDLTEEVIV-DGWFHTG 498
            ++A++     + +     +P    GE+ ++G  +  GY   P  T+  I  DGW  TG
Sbjct: 382 NMQAKV-----VDWSTGCLLPPGNCGELWIQGPGVMKGYLNNPKATQSTIDKDGWLRTG 435

Length = 560

>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated

 Score = 73.9 bits (182), Expect = 6e-14
 Identities = 78/298 (26%), Positives = 129/298 (43%), Gaps = 75/298 (25%)

Query: 215 PPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVD----------QMFVVTGKVCS 264
           P     +++ + YT GTTG  KG +LT++ ++A +              +  VVT     
Sbjct: 201 PELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGPLLHPGKELVVTA---- 256

Query: 265 EEDTYFSFLPLAHIYDQIIETHC---IHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPR 321
                   LPL HI+   +  +C   I  G        + R +   ++ELK   F+ +  
Sbjct: 257 --------LPLYHIF--ALTVNCLLFIELG-GQNLLITNPRDIPGFVKELKKYPFTAI-- 303

Query: 322 VYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAF 381
                 TG++            LF    N +    ++          LD   FS ++ + 
Sbjct: 304 ------TGVNT-----------LFNALLNNE--EFQE----------LD---FSSLKLSV 331

Query: 382 GGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLA-DVFNMIGTVGV 440
           GG       G A      E ++++T G  L +GYGLTE CS   +    D+    G++G+
Sbjct: 332 GG-------GMAVQQAVAERWVKLT-GQYLLEGYGLTE-CSPLVSVNPYDLDYYSGSIGL 382

Query: 441 PMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTG 498
           P+ + E +L  V + G +     P GE+ ++G  +  GY++RP+ T+EVI DGW  TG
Sbjct: 383 PVPSTEIKL--VDDDGNEVPPGEP-GELWVKGPQVMLGYWQRPEATDEVIKDGWLATG 437

Length = 560

>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated

 Score = 73.8 bits (182), Expect = 6e-14
 Identities = 46/174 (26%), Positives = 79/174 (45%), Gaps = 32/174 (18%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC-NSQAIT------YV 130
           LTY E+ + A R    + ++G+ PGD  GIY  N  E++ AM     ++A+       YV
Sbjct: 29  LTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKARAVPVNVNYRYV 88

Query: 131 P-----LYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSS 185
                 L D   A A+   +   E +       ++  +L  LP+    L+T+V   + S 
Sbjct: 89  EDELRYLLDDSDAVAL---VYEREFA------PRVAEVLPRLPK----LRTLVVVEDGS- 134

Query: 186 SQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVV 239
                  +L      +E+ L  G+ + +   +   ++  ++YT GTTG PKGV+
Sbjct: 135 -----GNDLLPGAVDYEDALAAGSPERDFGERSPDDL-YLLYTGGTTGMPKGVM 182

Length = 533

>gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS)

 Score = 73.0 bits (180), Expect = 1e-13
 Identities = 63/302 (20%), Positives = 112/302 (37%), Gaps = 92/302 (30%)

Query: 222 ISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ 281
           ++  ++TSG+TG PK V+ T++ + A    + Q +        E      +LP  H +  
Sbjct: 166 VAKYLFTSGSTGLPKAVINTHRMLCANQAMIAQCWPFLT---EEPPVLVDWLPWNHTF-- 220

Query: 282 IIETHCIHKGCSIGF----WRGDVRYL-------------MEDIQELKPTMFSGVPRVYD 324
                    G +  F    + G   Y+             + +++E+ PT++  VP+ ++
Sbjct: 221 ---------GGNHNFNMVLYNGGTLYIDDGKPVPGLFEETLRNLREVSPTVYFNVPKGFE 271

Query: 325 RIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGR 384
                          L   L                 +  AA          +R  F  R
Sbjct: 272 --------------MLVDAL-----------------ERDAA----------LRRRFFKR 290

Query: 385 LQAMLSGAAPLPIHV----EEFLRVTSG--APLTQGYGLTESC-SGCFTSLADVFNMIGT 437
           L+ +    A LP  V    +     T+G   P+T G G TE+  +  F          G 
Sbjct: 291 LRLLFYAGAALPQDVWDRLQALAVRTTGERIPMTSGLGATETAPTATFVHWPTD--RSGV 348

Query: 438 VGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFH 496
           +G+P    E +L  VP  G        + E+ ++G  +  GY++ P+LT E    +G++ 
Sbjct: 349 IGLPAPGTELKL--VPNGG--------KLEVRVKGPNVTPGYWRDPELTAEAFDEEGFYR 398

Query: 497 TG 498
            G
Sbjct: 399 IG 400

Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 71.1 bits (175), Expect = 3e-13
 Identities = 33/97 (34%), Positives = 45/97 (46%), Gaps = 14/97 (14%)

Query: 408 GAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVP--- 464
           G  L +GYG+TE+               G+ G P   VE R+  V E G +    VP   
Sbjct: 219 GVKLVEGYGMTETGVPIIAPGDP--APPGSCGRPRPGVEVRI--VDEDGRE----VPPGE 270

Query: 465 RGEICLRGN---TLFSGYYKRPDLTEEVIVDGWFHTG 498
            GE+ +R      +F GYY  P+ T +   +GWFHTG
Sbjct: 271 VGELVVRPRRPWAMFKGYYGMPEATAKAWRNGWFHTG 307

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 70.2 bits (172), Expect = 8e-13
 Identities = 75/284 (26%), Positives = 118/284 (41%), Gaps = 51/284 (17%)

Query: 221 NISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTG----KVCSE-EDTYFSFLPL 275
           +I+ + YT GTTG  KG +LT+  +VA +L V       G     +  E ++   + LPL
Sbjct: 208 DIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDGQPLMKEGQEVMIAPLPL 267

Query: 276 AHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKIS 335
            HIY       C+                          M SG   V       I+N   
Sbjct: 268 YHIYAFTANCMCM--------------------------MVSGNHNVL------ITNPRD 295

Query: 336 SGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPL 395
             G + K+L ++ ++  LG +          P    L FS         L+   SG   L
Sbjct: 296 IPGFI-KELGKWRFSALLG-LNTLFVALMDHPGFKDLDFS--------ALKLTNSGGTAL 345

Query: 396 PIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEM 455
                E     +G  + +GYGLTE+     T+       +GTVG+P+      L+ + + 
Sbjct: 346 VKATAERWEQLTGCTIVEGYGLTETSPVASTNPYGELARLGTVGIPV--PGTALKVIDDD 403

Query: 456 GYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTG 498
           G + L    RGE+C++G  +  GY+++P+ T E +  +GWF TG
Sbjct: 404 G-NELPLGERGELCIKGPQVMKGYWQQPEATAEALDAEGWFKTG 446

Length = 562

>gnl|CDD|140318 PTZ00297, PTZ00297, pantothenate kinase; Provisional

 Score = 71.0 bits (174), Expect = 8e-13
 Identities = 90/401 (22%), Positives = 152/401 (37%), Gaps = 52/401 (12%)

Query: 72  VGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVP 131
            G   WLTY  V   A   GS + + GV PGD  G+        +I   AC     T +P
Sbjct: 452 SGESEWLTYGTVDARARELGSGLLALGVRPGDVIGVDCEASRNIVILEVACALYGFTTLP 511

Query: 132 LYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKE- 190
           L      + +  +I+  ++ + F   N + +IL+C  R    L+T+V      S   ++ 
Sbjct: 512 LVGK--GSTMRTLIDEHKIKVVFADRNSVAAILTCRSR---KLETVV---YTHSFYDEDD 563

Query: 191 ---AEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIV- 246
              A +L ++   +E   Q G L      +  T  +   Y    T    G      A+V 
Sbjct: 564 HAVARDLNITLIPYEFVEQKGRLCPVPLKEHVTTDTVFTYVVDNTTSASG---DGLAVVR 620

Query: 247 ---AEVLSVDQMFVVTGKVCS--EEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDV 301
              A+VL      V+TG + S  ++     F P A +++++        G ++     D 
Sbjct: 621 VTHADVLRDISTLVMTGVLPSSFKKHLMVHFTPFAMLFNRVFVLGLFAHGSAVA--TVDA 678

Query: 302 RYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYK--LGNMKKG 359
            +L     + +PT+    P ++      +S       A+   LFE A+  +  L N+   
Sbjct: 679 AHLQRAFVKFQPTILVAAPSLFSTSRLQLSRANERYSAVYSWLFERAFQLRSRLINIH-- 736

Query: 360 MPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTE 419
               + + LL  + F   +E  GG               VE+ +   S    +  + L E
Sbjct: 737 ---RRDSSLLRFIFFRATQELLGGC--------------VEKIVLCVSEESTS--FSLLE 777

Query: 420 SCSGCFTS-LADVF--NMIGTV---GVPMTTVEARLESVPE 454
             S C+   L +VF     G     G P  +++  LE   E
Sbjct: 778 HISVCYVPCLREVFFLPSEGVFCVDGTPAPSLQVDLEPFDE 818

Length = 1452

>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated

 Score = 69.2 bits (170), Expect = 2e-12
 Identities = 37/170 (21%), Positives = 67/170 (39%), Gaps = 12/170 (7%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           LTY ++ D   R+  A  + G+  GD   +   N PE ++A+ A     +    L+    
Sbjct: 38  LTYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIGAAQLAGLRRTALHPLGS 97

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
            +   +++  A +S   V           L      LK +++   V      +  +L   
Sbjct: 98  LDDHAYVLEDAGISTLIVDPAPFVERALALLARVPSLKHVLTLGPVP-----DGVDL--- 149

Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVA 247
                   + G            +I+ + YT GTTG+PKGV+ T+++I  
Sbjct: 150 ---LAAAAKFGPAPLV-AAALPPDIAGLAYTGGTTGKPKGVMGTHRSIAT 195

Length = 524

>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS)

 Score = 68.6 bits (169), Expect = 2e-12
 Identities = 60/301 (19%), Positives = 96/301 (31%), Gaps = 99/301 (32%)

Query: 221 NISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTY-----FSF--- 272
           +++ ++YTSG+TG PKGV++ ++ +V  +  + + + +T       D       FSF   
Sbjct: 94  DLAYVIYTSGSTGRPKGVMVEHRGLVNLLAWLQERYGLT-----AGDRVLQFASFSFDAS 148

Query: 273 -----LPLA-----HIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRV 322
                 PL       +     E               D   L E ++E + T+   VP  
Sbjct: 149 VWEIFPPLLSGATLVLAPP--EVL------------RDPEALAELLREHRITVLHLVP-- 192

Query: 323 YDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFG 382
                                                        LL +L+ +    A  
Sbjct: 193 --------------------------------------------SLLRALLDALEPAALP 208

Query: 383 GRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTE---SCSGCFTSLADVFNMIGTVG 439
                ++ G A     V  +  +  GA L   YG TE     +       D+      +G
Sbjct: 209 SLRLVIVGGEALPAELVRRWRELFPGARLVNAYGPTETTVDVTYHEVDPDDLDGGSVPIG 268

Query: 440 VPMTTVEA-----RLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGW 494
            P+           L  VP         VP GE+ + G  +  GY  RP+LT E  V   
Sbjct: 269 RPIANTRVYVLDEDLRPVPVG-------VP-GELYIGGAGVARGYLNRPELTAERFVPDP 320

Query: 495 F 495
           F
Sbjct: 321 F 321

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445

>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated

 Score = 67.3 bits (165), Expect = 8e-12
 Identities = 45/136 (33%), Positives = 56/136 (41%), Gaps = 21/136 (15%)

Query: 378 REAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTES---CSGCFT-------S 427
           R      + AM++GAAP P  V   +    G  LT  YGLTE+    + C          
Sbjct: 292 RAGIDHPVHAMVAGAAP-PAAVIAKME-EIGFDLTHVYGLTETYGPATVCAWQPEWDALP 349

Query: 428 LADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPR-----GEICLRGNTLFSGYYKR 482
           L +   +    GV     E     V  +  D +  VP      GEI  RGN +  GY K 
Sbjct: 350 LDERAQLKARQGVRYPLQEG----VTVLDPDTMQPVPADGETIGEIMFRGNIVMKGYLKN 405

Query: 483 PDLTEEVIVDGWFHTG 498
           P  TEE    GWFHTG
Sbjct: 406 PKATEEAFAGGWFHTG 421

Length = 545

>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated

 Score = 66.7 bits (163), Expect = 1e-11
 Identities = 50/207 (24%), Positives = 85/207 (41%), Gaps = 15/207 (7%)

Query: 78  LTYQEVYDAAIRFGSAMRSR-GVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTL 136
            T+  +   A     A+    G+    R G    NC E +  + A       + PL   L
Sbjct: 39  TTFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVLFAVACMGAVFNPLNKQL 98

Query: 137 GANAVEFIINHAEVSIAFVQENKIPSILSCLPRC-CLYLKTIVSFANVSSSQKKEAEEL- 194
             + +  IINHAE  +          +   L  C C+     V F   S +    A    
Sbjct: 99  MNDQIVHIINHAEDEVIVADPRLAEQLGEILKECPCV---RAVVFIGPSDADSAAAHMPE 155

Query: 195 GVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLS--- 251
           G+  +S+E  L   +   + P   +T  + I Y++GTTG PKGVV +++++  + LS   
Sbjct: 156 GIKVYSYEALLDGRSTVYDWPELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRT 215

Query: 252 VDQMFVVTGKVCSEEDTYFSFLPLAHI 278
            D + V  G+      ++   +P+ H+
Sbjct: 216 TDSLAVTHGE------SFLCCVPIYHV 236

Length = 576

>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C)

 Score = 66.0 bits (162), Expect = 1e-11
 Identities = 41/169 (24%), Positives = 68/169 (40%), Gaps = 28/169 (16%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           LTY E+ + A R    +R+RGV PGD   +     PE ++A+ A       YVPL     
Sbjct: 13  LTYAELNERANRLARRLRARGVGPGDVVALLLERSPELVVAILAILKAGAAYVPLDPAYP 72

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
           A  + F++  +   +    E+  P                             A++L + 
Sbjct: 73  AERLAFMLEDSGARVLLTDESLAPLA--------------------------RADQLPLV 106

Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIV 246
               E   +        P     +++ +MYTSG+TG PKGV + ++ +V
Sbjct: 107 ILEEELDAEDA--GPPAPAVDADDLAYVMYTSGSTGRPKGVAVPHRGVV 153

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474

>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated

 Score = 64.9 bits (158), Expect = 4e-11
 Identities = 35/101 (34%), Positives = 48/101 (47%), Gaps = 4/101 (3%)

Query: 399 VEEFLRVTSGAPLTQGYGLTESCSG-CFTSLADVFNMIGTVGVPMTTVEARLESVPEMGY 457
           + +F RV + A     YGLTE+CSG            IG+ G  +  VE R+      G 
Sbjct: 281 IRDFTRVFTRARYIDAYGLTETCSGDTLMEAGREIEKIGSTGRALAHVEIRIAD--GAG- 337

Query: 458 DALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTG 498
             L    +GEIC+RG  +  GY+K P+ T E     WF +G
Sbjct: 338 RWLPPNMKGEICMRGPKVTKGYWKDPEKTAEAFYGDWFRSG 378

Length = 497

>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE)

 Score = 64.3 bits (157), Expect = 7e-11
 Identities = 50/183 (27%), Positives = 77/183 (42%), Gaps = 32/183 (17%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
            TY E+YD   R    +R  GV  GDR  IY    PE +IAM AC      +  ++    
Sbjct: 74  YTYAELYDEVSRLAGVLRKLGVVKGDRVIIYMPMIPEAVIAMLACARIGAIHSVVFGGFA 133

Query: 138 ANAVEFIINHAE----VSIAF-VQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKK--- 189
           +  +   I+ A+    V+ +F ++  ++           +  K ++  A +  SQ K   
Sbjct: 134 SKELASRIDDAKPKLIVTASFGIEPGRV-----------VPYKPLLDKA-LELSQHKPHK 181

Query: 190 ---------EAEELGVSCFSWEEFL-QLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVV 239
                     A         W E + +   +DC   P + T+   I+YTSGTTG+PKGVV
Sbjct: 182 VLILNRGQVPAPLKPGRDLDWAELMAKARPVDCV--PVESTDPLYILYTSGTTGKPKGVV 239

Query: 240 LTN 242
              
Sbjct: 240 RDT 242

PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607

>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated

 Score = 63.6 bits (155), Expect = 9e-11
 Identities = 50/213 (23%), Positives = 78/213 (36%), Gaps = 39/213 (18%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
            T++E+ D       A+  RGV  GDR  I   N  E++ ++ A N      VP+   L 
Sbjct: 43  TTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLAANMLGAIAVPVNFRLT 102

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGV- 196
              + F+++     +   +                      + A V+++ +     L   
Sbjct: 103 PPEIAFLVSDCGAHVVVTEA---------------------ALAPVATAVRDIVPLLSTV 141

Query: 197 ---------SCFSWEEFLQLGTLDCELPPKKKTNIST--IMYTSGTTGEPKGVVLTNQAI 245
                    S   +E+   L        P    N S   IMYTSGTTG PKG VLT+  +
Sbjct: 142 VVAGGSSDDSVLGYED--LLAEAGPAHAPVDIPNDSPALIMYTSGTTGRPKGAVLTHANL 199

Query: 246 VAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHI 278
             + +      + T       D  F  +PL HI
Sbjct: 200 TGQAM----TCLRTNGADINSDVGFVGVPLFHI 228

Length = 542

>gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed

 Score = 63.7 bits (156), Expect = 1e-10
 Identities = 32/128 (25%), Positives = 55/128 (42%), Gaps = 18/128 (14%)

Query: 378 REAFGGRLQAMLSGAAPLPIHV----EEFLRVTSGA--PLTQGYGLTESCSGCFTSLADV 431
           R  F  RL+ +    A L   V    +     T G    +  G G+TE+ +   T     
Sbjct: 329 RRRFFSRLKLLFYAGAALSQDVWDRLDRVAEATCGERIRMMTGLGMTET-APSATFTTGP 387

Query: 432 FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV 491
            +  G +G+P    E +L  VP  G        + E+ ++G  +  GY++ P+LT E   
Sbjct: 388 LSRAGNIGLPAPGCEVKL--VPVGG--------KLEVRVKGPNVTPGYWRAPELTAEAFD 437

Query: 492 D-GWFHTG 498
           + G++ +G
Sbjct: 438 EEGYYRSG 445

Length = 614

>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes

 Score = 63.0 bits (154), Expect = 1e-10
 Identities = 40/182 (21%), Positives = 67/182 (36%), Gaps = 29/182 (15%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           LTY E+   A    +A+R+ GV PGD   +      E I+A+         YVP+     
Sbjct: 13  LTYGELARRANAIAAALRAAGVAPGDLVAVVMPKGWEQIVAVLGILLAGAAYVPIDPDQP 72

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
           A     I+  A                                        +  E   + 
Sbjct: 73  AERRAAILARAGARAVLTD----------------------------PGLAQPEEAPDLL 104

Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV 257
             + +            P     +++ +++TSG+TGEPKGV++T++A V  +L V++ F 
Sbjct: 105 VVADDAAAAESPAP-PPPRVDPDDLAYVIFTSGSTGEPKGVMITHRAAVNTILDVNRRFG 163

Query: 258 VT 259
           V 
Sbjct: 164 VG 165

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476

>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated

 Score = 63.1 bits (154), Expect = 1e-10
 Identities = 48/202 (23%), Positives = 82/202 (40%), Gaps = 24/202 (11%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           L YQ +   A      + + G+ PGDR  +      +++ A  AC    +  VPL   +G
Sbjct: 50  LPYQTLRARAEAGARRLLALGLKPGDRVALIAETDGDFVEAFFACQYAGLVPVPLPLPMG 109

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
               E  I      +A           S  P   +    ++ + N ++          + 
Sbjct: 110 FGGRESYIAQLRGMLA-----------SAQPAAIITPDELLPWVNEATHGNP-----LLH 153

Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEV--LSVDQM 255
             S   F  L   D  LP     +I+ + Y+SG+T  P+GV++T++A++A +  +S D +
Sbjct: 154 VLSHAWFKALPEADVALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGL 213

Query: 256 FVVTGKVCSEEDTYFSFLPLAH 277
            V  G  C       S+LP  H
Sbjct: 214 KVRPGDRC------VSWLPFYH 229

Length = 579

>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated

 Score = 63.1 bits (154), Expect = 1e-10
 Identities = 47/206 (22%), Positives = 80/206 (38%), Gaps = 12/206 (5%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           +TY E+ + + RF + +R RGV  GDR  ++  NCP++ I           +VP+     
Sbjct: 59  ITYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFFGILKLGAVHVPVSPLFR 118

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
            + + + +N A   +    +   P +        L    + S A+V  ++        + 
Sbjct: 119 EHELSYELNDAGAEVLLALDQLAPVVEQVRAETSLRHVIVTSLADVLPAEPTLPLPDSLR 178

Query: 198 -----CFSWEEFLQL---GTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEV 249
                     + L      T    LPP     ++ + YT GTTG PKG   T + +V   
Sbjct: 179 APRLAAAGAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTA 238

Query: 250 LSVDQMFVVTGKVCSEEDTYFSFLPL 275
            +          V  E+  + SFLP 
Sbjct: 239 AA----AYAVAVVGGEDSVFLSFLPE 260

Length = 567

>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1

 Score = 63.1 bits (153), Expect = 2e-10
 Identities = 81/321 (25%), Positives = 134/321 (41%), Gaps = 65/321 (20%)

Query: 192 EELGVSCFSWEEFLQLG-----TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIV 246
           EE      +W+E L+       T D E     +T++  + ++SGTTG  KGV+LT++ +V
Sbjct: 153 EEKIEGAVNWKELLEAADRAGDTSDNEE--ILQTDLCALPFSSGTTGISKGVMLTHRNLV 210

Query: 247 AEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCI---HKGCSIGFWRGDVRY 303
           A + S   +F V  ++  +  T    +P  HIY  I    C    +KG  +   R ++R 
Sbjct: 211 ANLCS--SLFSVGPEMIGQVVT-LGLIPFFHIYG-ITGICCATLRNKGKVVVMSRFELRT 266

Query: 304 LMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQN 363
            +  +   + +    VP +   I   + N                               
Sbjct: 267 FLNALITQEVSFAPIVPPI---ILNLVKN------------------------------- 292

Query: 364 KAAPLLDSLVFSKIREAFGGRLQAMLSGAAPL-PIHVEEFLRVTSGAPLTQGYGLTE-SC 421
              P+++    SK++      LQA+++ AAPL P  +  F     G  + + YGLTE SC
Sbjct: 293 ---PIVEEFDLSKLK------LQAIMTAAAPLAPELLTAFEAKFPGVQVQEAYGLTEHSC 343

Query: 422 SGCFTSLADVFNMIG---TVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSG 478
                   +  + I    +VG  +  +E +    P+ G     + P GE+C+R   +  G
Sbjct: 344 ITLTHGDPEKGHGIAKKNSVGFILPNLEVKFID-PDTGRSLPKNTP-GELCVRSQCVMQG 401

Query: 479 YYKRPDLTEEVI-VDGWFHTG 498
           YY   + T+  I  DGW HTG
Sbjct: 402 YYNNKEETDRTIDEDGWLHTG 422

Length = 546

>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated

 Score = 62.4 bits (152), Expect = 2e-10
 Identities = 33/102 (32%), Positives = 46/102 (45%), Gaps = 18/102 (17%)

Query: 408 GAPLTQGYGLTESCSGCFTSLADVFN--------MIGTVGVPMTTVEARLESVPEMGYDA 459
           G  L Q +GL E  +G  T L    +         IGT G   T +E +++       D 
Sbjct: 305 GKVLVQYFGLGE-VTGNITVLPPALHDAEDGPDARIGTCGFERTGMEVQIQD------DE 357

Query: 460 LSSVP---RGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTG 498
              +P    GEIC+ G  +F+GYY  P+   +   DGWF TG
Sbjct: 358 GRELPPGETGEICVIGPAVFAGYYNNPEANAKAFRDGWFRTG 399

Length = 528

>gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS)

 Score = 62.2 bits (152), Expect = 3e-10
 Identities = 49/178 (27%), Positives = 70/178 (39%), Gaps = 25/178 (14%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           +++ E+     R  +A+R  GV PGDR   Y  N PE +IAM A  S    +       G
Sbjct: 87  ISWAELRSQVARLAAALRDLGVKPGDRVAGYLPNVPEAVIAMLATASIGAIWSSCSPDFG 146

Query: 138 ANAV--EFIINHAEVSIA----------FVQENKIPSILSCLPRCCLYLKTIVSFANVSS 185
             AV   F     +V  A            +  KI  I+  LP     L+ +V    +SS
Sbjct: 147 VEAVLDRFGQIEPKVLFAVDGYVYNGKEHDRREKIAEIVKGLPS----LEAVVVVPYLSS 202

Query: 186 SQKKEAEELGVSCFSWEEFLQLGTLDCELPPK-KKTNIST---IMYTSGTTGEPKGVV 239
                  +     FS    L     D   P + ++        I+Y+SGTTG PK +V
Sbjct: 203 -----DAQPAALKFSALTLLWSLAGDRAAPLEFERLPFDHPLWILYSSGTTGLPKCIV 255

AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616

>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family

 Score = 61.8 bits (150), Expect = 4e-10
 Identities = 93/445 (20%), Positives = 163/445 (36%), Gaps = 76/445 (17%)

Query: 64  GRKVSDGKVGPYVW------LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWII 117
            R V +G+ G   +      L+Y E+     R G+A+R  GV   +R  +   +  ++ I
Sbjct: 11  DRNVVEGRGGKTAFIDDISSLSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPI 70

Query: 118 AMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTI 177
           A        I  V L   L A+   +++  +   + FV    +P I + L +   +L+  
Sbjct: 71  AFLGAIRAGIVPVALNTLLTADDYAYMLEDSRARVVFVSGELLPVIKAALGKSP-HLEHR 129

Query: 178 VSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKG 237
           V      + + + AE L       E+F        +    +  + +  +Y+SG+TG PKG
Sbjct: 130 VVVGRPEAGEVQLAELLATES---EQF--------KPAATQADDPAFWLYSSGSTGMPKG 178

Query: 238 VVLT--NQAIVAEVLSVDQMFVVTGKVC-SEEDTYFSF-LPLAHIYDQIIETHCIHKGCS 293
           VV T  N    AE+ + + + +    V  S    +F++ L  A  +   +    +  G  
Sbjct: 179 VVHTHSNPYWTAELYARNTLGIREDDVVFSAAKLFFAYGLGNALTFPMSVGATTVLMG-- 236

Query: 294 IGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKL 353
               R     + + ++  +PT+F GVP +Y                              
Sbjct: 237 ---ERPTPDAVFDRLRRHQPTIFYGVPTLY------------------------------ 263

Query: 354 GNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQ 413
                 M  +   P  D +           RL+   S    LP  V +  +   G  +  
Sbjct: 264 ----AAMLADPNLPAEDQV-----------RLRLCTSAGEALPAEVGQRWQARFGVDIVD 308

Query: 414 GYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGN 473
           G G TE      ++L       GT G P+     RL  V + G D  +  P GE+ + G 
Sbjct: 309 GIGSTEMLHIFLSNLPGDVRY-GTSGKPVPGYRLRL--VGDGGQDVAAGEP-GELLISGP 364

Query: 474 TLFSGYYKRPDLTEEVIVDGWFHTG 498
           +  + Y+     T +     W  +G
Sbjct: 365 SSATMYWNNRAKTRDTFQGEWTRSG 389

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508

>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated

 Score = 62.0 bits (151), Expect = 4e-10
 Identities = 45/172 (26%), Positives = 72/172 (41%), Gaps = 10/172 (5%)

Query: 70  GKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITY 129
           G V  Y   +Y E+ +   R  +   S G+  GD+  ++  NCPE+I             
Sbjct: 33  GVVRRY---SYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIM 89

Query: 130 VPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKK 189
           VP+   L      +I+ +++ S+        P            L+ I     ++     
Sbjct: 90  VPINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQEDATPLRHIC----LTRVALP 145

Query: 190 EAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLT 241
             +  GVS F+  +  Q  TL C  PP    + + I++TSGTT  PKGVV+T
Sbjct: 146 ADD--GVSSFTQLKAQQPATL-CYAPPLSTDDTAEILFTSGTTSRPKGVVIT 194

Length = 517

>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated

 Score = 61.1 bits (149), Expect = 5e-10
 Identities = 49/219 (22%), Positives = 90/219 (41%), Gaps = 29/219 (13%)

Query: 78  LTYQEVYDAAIRF-GSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC-NSQAITYVPLYDT 135
           ++Y+E+ + A R  G   +  GV  GDR  +Y  N P+++IA  A   + A+  VP+   
Sbjct: 36  ISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAILRANAVV-VPVNPM 94

Query: 136 LGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFAN---------VSSS 186
                +   +  +   +A V     P +   +    L    +  +++         V + 
Sbjct: 95  NREEELAHYVTDSGARVAIVGSELAPKVAPAVGNLRLRHVIVAQYSDYLPAEPEIAVPAW 154

Query: 187 QKKEAEELGVSCF---SWEEFLQLGTLDCELPPKKKT----NISTIMYTSGTTGEPKGVV 239
            + E     ++     +W+E      L   L P   T    +++ + YTSGTTG PKG +
Sbjct: 155 LRAEPPLQALAPGGVVAWKE-----ALAAGLAPPPHTAGPDDLAVLPYTSGTTGVPKGCM 209

Query: 240 LTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHI 278
            T++ ++A  +        T      E    + LPL H+
Sbjct: 210 HTHRTVMANAVGSVLWSNSTP-----ESVVLAVLPLFHV 243

Length = 546

>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated

 Score = 61.4 bits (150), Expect = 6e-10
 Identities = 49/199 (24%), Positives = 78/199 (39%), Gaps = 47/199 (23%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYV---PLYD 134
            TY+E  +        + + G+  GDR GI+  N PEW++   A        V   P Y 
Sbjct: 44  WTYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLTQFATAKIGAILVTINPAYR 103

Query: 135 TLGANAVEFIINHAEVS-------------IAFVQENKIPSILSCLPRCCL-----YLKT 176
               + +E+ +N +                +A + E   P + +C P          L+ 
Sbjct: 104 L---SELEYALNQSGCKALIAADGFKDSDYVAMLYE-LAPELATCEPGQLQSARLPELRR 159

Query: 177 IVSFANVSSSQKKEAEELGVSCFSWEEFLQLGT--LDCELPPKKKT-------NISTIMY 227
           ++             +E      +++E L LG    D EL  ++ T       NI    Y
Sbjct: 160 VIFL----------GDEKHPGMLNFDELLALGRAVDDAELAARQATLDPDDPINIQ---Y 206

Query: 228 TSGTTGEPKGVVLTNQAIV 246
           TSGTTG PKG  LT++ I+
Sbjct: 207 TSGTTGFPKGATLTHRNIL 225

Length = 559

>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)

 Score = 60.7 bits (148), Expect = 8e-10
 Identities = 44/204 (21%), Positives = 81/204 (39%), Gaps = 31/204 (15%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           LTY E+   A    + +++ G  PGDR  +      +++ A   C         LY    
Sbjct: 24  LTYAELDRRARAIAARLQALG-APGDRVLLLAPPGLDFVAAFFGC---------LY---- 69

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSIL-SCLPRCCLYLKTIVSFANVSSSQKKEAEELGV 196
           A A+             +   ++ +IL     R       +++ + V ++ +        
Sbjct: 70  AGAIAVPAPPPRRLGRHLA--RLAAILADAGAR------AVLTTSAVLAALRAALAAPAA 121

Query: 197 SCFSW---EEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVD 253
                   ++   L   D   PP    +I+ + YTSG+TG PKGV++T+  ++A   ++ 
Sbjct: 122 LLLLLIAADDLAALAAADWRPPPPDPDDIAFLQYTSGSTGAPKGVMVTHGNLLA---NLR 178

Query: 254 QMFVVTGKVCSEEDTYFSFLPLAH 277
            +    G     +D   S+LPL H
Sbjct: 179 AIARAFG--LDPDDVGVSWLPLYH 200

FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547

>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like

 Score = 60.9 bits (148), Expect = 8e-10
 Identities = 92/458 (20%), Positives = 156/458 (34%), Gaps = 117/458 (25%)

Query: 79  TYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGA 138
           T+ ++ D + +  +  ++ G+  GD   +      E+  +M A +      +P    L A
Sbjct: 49  TFGDLKDYSNKAANFFKALGIGKGDTVMLTLKRRYEFWFSMLALHKIGAIAIPATHMLTA 108

Query: 139 NAVEFIINHAEVS-IAFVQENKIP-SILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGV 196
             + + I  A +  I  + E+ +P  I    P C      ++    V     +       
Sbjct: 109 KDIVYRIEAAGIKMIVCIGEDGVPEHIDEAAPECGSPTLLVL----VGDPVPE------- 157

Query: 197 SCFSWEEFLQLGTLDC--ELPP------KKKTNISTIMYTSGTTGEPKGVVLTNQAIVAE 248
               W +F +    +   +             +I  + +TSGTTG PK        +V  
Sbjct: 158 ---GWIDFDK-EIENASPDFERPTGNDATCNDDILLVYFTSGTTGMPK--------MVEH 205

Query: 249 VLSVDQMFVVTGKV--CSEE--------DTYFSFLPLAHIYDQIIETHCIHKGCSI---G 295
             +     +VT K     +E        DT +       +Y Q I       G ++    
Sbjct: 206 DHTYPLGHIVTAKYWQNVKEGGLHLTVADTGWGKAVWGKLYGQWI------AGAAVFVYD 259

Query: 296 FWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGN 355
           + + D + L+E I++   T F   P +Y R    I   +S             Y+     
Sbjct: 260 YDKFDPKNLLEKIEKYGVTTFCAPPTIY-RFL--IKEDLSK------------YD----- 299

Query: 356 MKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGY 415
                              S +R           +G    P     F   T G  L +G+
Sbjct: 300 ------------------LSSLRYC-------TTAGEPLNPEVFNTFKEKT-GIKLMEGF 333

Query: 416 GLTESCSGCFTSLADVFNMI---GTVGVPMTTVEARLESVPEMGYDALSSVP--RGEICL 470
           G TE       ++A    M    G++G P    +  +     +  D  S      GEI +
Sbjct: 334 GQTE----TTLTIATFPWMEPKPGSMGKPSPGYDIDI-----IDPDGKSCEVGEEGEIVI 384

Query: 471 RGNT-----LFSGYYKRPDLTEEVIVDGWFHTGKNPWQ 503
           R +      LF GYY+ P+ T EV  DG++HTG   W 
Sbjct: 385 RTSDGKPLGLFMGYYRDPERTAEVWHDGYYHTGDTAWM 422

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537

>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated

 Score = 60.3 bits (147), Expect = 1e-09
 Identities = 45/174 (25%), Positives = 66/174 (37%), Gaps = 24/174 (13%)

Query: 76  VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWI-----IAMEACNSQAITYV 130
              T+ E Y    R  SA+  RG+  GD   +   N P  +     + M       +   
Sbjct: 42  RRRTWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFGVPMAGAVLNTLNT- 100

Query: 131 PLYDTLGANAVEFIINHAEVSIAFVQENKIPSI---LSCLPRCCLYLKTIVSFANVSSSQ 187
                L A ++ F++ H E  +  V           L+ LP      K +V   +V   +
Sbjct: 101 ----RLDAASIAFMLRHGEAKVLIVDTEFAEVAREALALLPG----PKPLV--IDVDDPE 150

Query: 188 KKEAEELGVSCFSWEEFLQLG--TLDCELPPKKKTNISTIMYTSGTTGEPKGVV 239
                 +G     +E FL  G       LP  +   I+ + YTSGTTG PKGVV
Sbjct: 151 YPGGRFIGA--LDYEAFLASGDPDFAWTLPADEWDAIA-LNYTSGTTGNPKGVV 201

Length = 545

>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 60.4 bits (147), Expect = 1e-09
 Identities = 42/200 (21%), Positives = 72/200 (36%), Gaps = 40/200 (20%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           L+YQ+++         +R+ GV    R  +   N  +W+IA  AC    I  +P+     
Sbjct: 3   LSYQQLWQEVDLLAEQLRALGVK---RIALALDNSIDWVIADLACLQAGIVCIPIPHFFS 59

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKE-AEELGV 196
           A   + ++N A                            ++S    ++S        LG 
Sbjct: 60  AQQTQHLLNDAGAD------------------------LLISDDPDAASALHTPFATLGE 95

Query: 197 SCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMF 256
             +               P +     + I YTSG+TG+PKGV L+  A+     S+ +  
Sbjct: 96  DLYIA-------LRPSANPVELPAGTAKITYTSGSTGQPKGVCLSAAALETVAQSLAEAI 148

Query: 257 VVTGKVCSEEDTYFSFLPLA 276
            +      E + +   LPLA
Sbjct: 149 AIL-----EPERHLCLLPLA 163

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448

>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents

 Score = 60.4 bits (147), Expect = 1e-09
 Identities = 33/130 (25%), Positives = 54/130 (41%), Gaps = 31/130 (23%)

Query: 399 VEEFLRVTS--GAP---LTQGYGLTESCSGCF----------TSLADVFNMIGTVGVPMT 443
           +  FL + +  G P   +   +G++E+CSG            T    V ++ G +     
Sbjct: 306 IRRFLELLAPYGLPADAIRPAFGMSETCSGVTYSRGFRTGPDTGGVLVDSLTGPLRFAAA 365

Query: 444 TVEARLESVPEMGY-----------DALSSVPRGEIC---LRGNTLFSGYYKRPDLTEEV 489
                +  V E+G            +  + +P GE+    +RG T+ SGYY+ P+   E 
Sbjct: 366 DHPEAVTFV-ELGRPIPGVAIRIVDEDGALLPEGEVGRLQVRGPTVTSGYYRNPEANAEA 424

Query: 490 IV-DGWFHTG 498
              DGWF TG
Sbjct: 425 FTEDGWFRTG 434

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560

>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA)

 Score = 60.4 bits (147), Expect = 1e-09
 Identities = 76/312 (24%), Positives = 125/312 (40%), Gaps = 80/312 (25%)

Query: 222 ISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ 281
           I+ I ++SG+TGEPKGV+LT++ ++  + +     ++     + ED + S++PL H    
Sbjct: 108 IAFIQFSSGSTGEPKGVILTHKNLLTNIEA-----IIEAAEITSEDVFLSWMPLTHDMGL 162

Query: 282 IIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVY-DRIYTGISNKISSGGAL 340
           I      H   +     G  +YLM         +F   P ++ D+     +  +SS    
Sbjct: 163 I----GFHLTPTA---LGINQYLM------PTRLFIRRPLLWLDKASQHRATILSSP--- 206

Query: 341 SKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHV- 399
                 F Y Y L + K     +      D    S +R  F        +GA P+   + 
Sbjct: 207 -----NFGYKYLLKHFKTEKIID-----WD---LSSVRLIF--------NGAEPISADLC 245

Query: 400 EEF--------LRVTSGAPLTQGYGLTESCSG-CFTSLADVFNMI----GTVGVPMTTVE 446
           EEF        LR  +   +   YGL E+     F    + F  +      + V +  +E
Sbjct: 246 EEFLEKMAPFGLRPNA---MYPVYGLAEATLAVSFPKPGEPFKTVCLDRNHLKVGVKIIE 302

Query: 447 ARLE-----SVPEMGY-----------DALSSVPR---GEICLRGNTLFSGYYKRPDLTE 487
              +     S  E+G            DA   +P    G I ++G+ + SGYY  P+ T+
Sbjct: 303 IDPKNSDAISFVEVGSPIDGCEIRIVDDAGEVLPDRTIGHIQIKGDNVTSGYYNNPEATK 362

Query: 488 EVIV-DGWFHTG 498
           + I  DGW  TG
Sbjct: 363 KSITPDGWLKTG 374

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499

>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated

 Score = 59.6 bits (145), Expect = 2e-09
 Identities = 36/124 (29%), Positives = 53/124 (42%), Gaps = 18/124 (14%)

Query: 385 LQAMLSGAAPL-PIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNM------IGT 437
           L+ +  GA+P+ P+ + E +    G    Q YG TE      T L    +       + +
Sbjct: 283 LETVYYGASPMSPVRLAEAIERF-GPIFAQYYGQTE-APMVITYLRKRDHDPDDPKRLTS 340

Query: 438 VGVPMTTVEARLESVPEMGYDALSSVPR---GEICLRGNTLFSGYYKRPDLTEEVIVDGW 494
            G P   +   L        +    V +   GEIC+RG  +  GY+ RP+ T E   DGW
Sbjct: 341 CGRPTPGLRVALLD------EDGREVAQGEVGEICVRGPLVMDGYWNRPEETAEAFRDGW 394

Query: 495 FHTG 498
            HTG
Sbjct: 395 LHTG 398

Length = 524

>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated

 Score = 58.8 bits (143), Expect = 3e-09
 Identities = 36/118 (30%), Positives = 47/118 (39%), Gaps = 21/118 (17%)

Query: 391 GAAPLPIHV-EEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFN------MIGTVGVPMT 443
           GA+ +P+ V +E      G      YG TE        LA V          G+ G P+ 
Sbjct: 294 GASIMPVEVLKELRERLPGLRFYNCYGQTE-----IAPLATVLGPEEHLRRPGSAGRPVL 348

Query: 444 TVEARLESVPEMGYDALSSVPR---GEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTG 498
            VE R+        D  + V     GEI  R   L  GY+  P+ T E    GWFH+G
Sbjct: 349 NVETRVVD------DDGNDVAPGEVGEIVHRSPQLMLGYWDDPEKTAEAFRGGWFHSG 400

Length = 523

>gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional

 Score = 59.3 bits (144), Expect = 3e-09
 Identities = 60/291 (20%), Positives = 106/291 (36%), Gaps = 94/291 (32%)

Query: 225 IMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIE 284
            ++TSG+TG PK V+ T Q ++   +++ Q  +   +          ++P  H       
Sbjct: 225 YLFTSGSTGMPKAVINT-QRMMCANIAM-QEQLRPREPDPPPPVSLDWMPWNHTM----- 277

Query: 285 THCIHKGCSIGF----WRGDVRYL-------------MEDIQELKPTMFSGVPRVYDRIY 327
                 G +  F    W G   Y+             + +++E+ PT++  VP  Y    
Sbjct: 278 ------GGNANFNGLLWGGGTLYIDDGKPLPGMFEETIRNLREISPTVYGNVPAGY---- 327

Query: 328 TGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQA 387
                       L++                 M ++ A           +R +F   L+ 
Sbjct: 328 ----------AMLAE----------------AMEKDDA-----------LRRSFFKNLRL 350

Query: 388 MLSGAAPLPIHVEEFLRV----TSGA--PLTQGYGLTESCSGCFTSLADVFNMIGTVGVP 441
           M  G A L   + E ++     T+G   P   GYG TE+ +   T        +G +G+P
Sbjct: 351 MAYGGATLSDDLYERMQALAVRTTGHRIPFYTGYGATET-APTTTGTHWDTERVGLIGLP 409

Query: 442 MTTVEARLESVPEMGYDALSSVPRG---EICLRGNTLFSGYYKRPDLTEEV 489
           +  VE +L              P G   E+ ++G  +  GY+K P+LT   
Sbjct: 410 LPGVELKL-------------APVGDKYEVRVKGPNVTPGYHKDPELTAAA 447

Length = 624

>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated

 Score = 57.9 bits (140), Expect = 6e-09
 Identities = 40/123 (32%), Positives = 56/123 (45%), Gaps = 17/123 (13%)

Query: 384 RLQAMLSGAAPLPIHVEEFLRVTS----GAPLTQGYGLTE-SCSGCFTSLADVFNMIGTV 438
            L+ +  GAAP     +  LR  +     A +   +G TE S   C     D    +G+V
Sbjct: 291 ALRVLSWGAAPAS---DTLLRQMAATFPEAQILAAFGQTEMSPVTCMLLGEDAIRKLGSV 347

Query: 439 GVPMTTVEARLESVPEMGYDALSSVPRG---EICLRGNTLFSGYYKRPDLTEEVIVDGWF 495
           G  + TV AR+        + ++ VP G   EI  R  TL SGY+  P+ T E    GWF
Sbjct: 348 GKVIPTVAARVVD------ENMNDVPVGEVGEIVYRAPTLMSGYWNNPEATAEAFAGGWF 401

Query: 496 HTG 498
           H+G
Sbjct: 402 HSG 404

Length = 542

>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated

 Score = 57.9 bits (141), Expect = 7e-09
 Identities = 34/94 (36%), Positives = 49/94 (52%), Gaps = 13/94 (13%)

Query: 412 TQGYGLTESCSGCFTSLAD--VFNMIGTVGVPMTTVEARLESV-PEMGYDALSSVPR--- 465
           T  YG+TE+      +  D  +   + TVG  +  +E ++  V PE G     +VPR   
Sbjct: 345 TIAYGMTETSPVSTQTRTDDPLEKRVTTVGRALPHLEVKI--VDPETG----ETVPRGEQ 398

Query: 466 GEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTG 498
           GE+C RG ++  GY+  P+ T E I  DGW HTG
Sbjct: 399 GELCTRGYSVMKGYWNDPEKTAEAIDADGWMHTG 432

Length = 559

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 57.2 bits (139), Expect = 9e-09
 Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 7/60 (11%)

Query: 220 TNISTIMYTSGTTGEPKGVVLTN-QAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHI 278
            + + I+YTSGTTG PKGV+LT+ Q + A  L+   +          +D   + LPL HI
Sbjct: 81  VDTAAILYTSGTTGPPKGVLLTHAQLLFAARLAARLL------GLRPDDVLLTPLPLFHI 134

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase)

 Score = 56.5 bits (137), Expect = 1e-08
 Identities = 24/78 (30%), Positives = 34/78 (43%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           LTY E+ DAA R  +A+   GV PGD       N  E+++   AC        P+     
Sbjct: 2   LTYGELDDAADRLAAALAELGVRPGDVVAFQLPNWWEFVVVYLACARIGAVINPIVPIYR 61

Query: 138 ANAVEFIINHAEVSIAFV 155
              + FI+  A   + FV
Sbjct: 62  ERELGFILRQARARVLFV 79

Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437

>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain

 Score = 56.1 bits (136), Expect = 2e-08
 Identities = 33/130 (25%), Positives = 49/130 (37%), Gaps = 16/130 (12%)

Query: 384 RLQAMLSGAAPLPI-HVEEFLRVTSGAPLTQGYGLTESCSGC-FTSL----ADVFNMIGT 437
            L+ ++ G   L    V+ +     GA L   YG TE+      T +    A   + +  
Sbjct: 236 SLRLVILGGEALTPALVDRWRARGPGARLINLYGPTETTVWSTATLVDPDDAPRESPV-P 294

Query: 438 VGVPMTTVEARLESVPEMGYDALSSVPR---GEICLRGNTLFSGYYKRPDLTEEVIVDGW 494
           +G P+      +        D L  VP    GE+ + G  +  GY  RP+LT E  V   
Sbjct: 295 IGRPLANTRLYVLD------DDLRPVPVGVVGELYIGGPGVARGYLNRPELTAERFVPDP 348

Query: 495 FHTGKNPWQY 504
           F  G     Y
Sbjct: 349 FAGGDGARLY 358

This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409

>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated

 Score = 56.6 bits (137), Expect = 2e-08
 Identities = 16/33 (48%), Positives = 22/33 (66%)

Query: 466 GEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTG 498
           GEI +R  +L  GY+ +P+ T E + DGW HTG
Sbjct: 415 GEIVVRTPSLLKGYWNKPEATAEALRDGWLHTG 447

Length = 567

>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional

 Score = 56.7 bits (137), Expect = 2e-08
 Identities = 65/251 (25%), Positives = 102/251 (40%), Gaps = 36/251 (14%)

Query: 41  GLESPWQFFC----DSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRS 96
           GL   W   C    D A RI  N+ +  R V     GP V  TY +++D A++   A+  
Sbjct: 3   GLMQDWPLLCHRIIDHAARIHGNREVVTRSVE----GPIVRTTYAQIHDRALKVSQALDR 58

Query: 97  RGVNPGDRCGIYGSNCPE----WIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSI 152
            G+  GDR      N       W   M      AI +  +   L    + +IINHAE  +
Sbjct: 59  DGIKLGDRVATIAWNTWRHLEAWYGIM---GIGAICHT-VNPRLFPEQIAWIINHAEDRV 114

Query: 153 AFVQENKIP---SILSCLPRCCLYLKTIVSF---ANVSSSQKKEAEELGVSCFSWEEFLQ 206
                  +P    I   LP     ++  V     A++  +  K A        ++EE++ 
Sbjct: 115 VITDLTFVPILEKIADKLPS----VERYVVLTDAAHMPQTTLKNA-------VAYEEWIA 163

Query: 207 LGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEE 266
               D       +   + + YTSGTTG+PKGV+ ++++ V   L  +    + G   +  
Sbjct: 164 EADGDFAWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDAL-GTSAA-- 220

Query: 267 DTYFSFLPLAH 277
           DT    +PL H
Sbjct: 221 DTMLPVVPLFH 231

Length = 542

>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated

 Score = 56.4 bits (136), Expect = 2e-08
 Identities = 39/144 (27%), Positives = 61/144 (42%), Gaps = 13/144 (9%)

Query: 365 AAPLLDSLVFSKIREAFGGRLQAML----SGAAPLPIHVEEFLRVTSGAPLTQGYGLTES 420
           A P +  ++  +      GR  A L    S +APL     + L+    AP+   +G+TE+
Sbjct: 273 AVPTIHQILLERAATEPSGRKPAALRFIRSCSAPLTAETAQALQTEFAAPVVCAFGMTEA 332

Query: 421 CSGCFTSLADVF----NMIGTVGVPMTTVEARLESVPEMGYDALSSVPR--GEICLRGNT 474
                T+  +      N + + G+   +  A++  V   G D L       GE+ LRG T
Sbjct: 333 THQVTTTQIEGIGQTENPVVSTGLVGRSTGAQIRIV---GSDGLPLPAGAVGEVWLRGTT 389

Query: 475 LFSGYYKRPDLTEEVIVDGWFHTG 498
           +  GY   P +T     DGW  TG
Sbjct: 390 VVRGYLGDPTITAANFTDGWLRTG 413

Length = 534

>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 55.9 bits (135), Expect = 2e-08
 Identities = 42/171 (24%), Positives = 62/171 (36%), Gaps = 57/171 (33%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDR-CGIYGSNCPEWIIAMEACNSQAITYVPLYDTL 136
           L+Y E+ + + R  + +   GV PGDR  G+     PE ++A+ A       YVPL+   
Sbjct: 1   LSYAELREQSARVANLLADLGVKPGDRVAGLLPRT-PELVVAILATWRVGAIYVPLFTAF 59

Query: 137 GANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGV 196
           G  A+E+ + H+                             V   N +            
Sbjct: 60  GPKAIEYRLGHSG--------------------------AKVVVTNAA------------ 81

Query: 197 SCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVA 247
                      G LD         ++   MYTSGTTG PKGV +   A+ A
Sbjct: 82  ---------NRGKLD--------DDLFAQMYTSGTTGLPKGVPVPLNALAA 115

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440

>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 55.8 bits (135), Expect = 2e-08
 Identities = 58/295 (19%), Positives = 97/295 (32%), Gaps = 83/295 (28%)

Query: 222 ISTIMYTSGTTGEPKGVVLTNQAIVAEV--------LSVDQMFVVTGKVCSEEDTYFSFL 273
            + + +TSGTTG PK V+ T+   +  +        L  D +          +  + S  
Sbjct: 83  PALLYFTSGTTGLPKMVLHTHSYPLGHLVTGAYWLDLRPDDLHWTIADPGWAKGAWSSLF 142

Query: 274 -PLAHIYDQIIETHCIHKGCSIGFWRG---DVRYLMEDIQELKPTMFSGVPRVYDRIYTG 329
            P                G ++  + G   D    +E ++    T F   P  Y  +   
Sbjct: 143 APWLL-------------GAAVFVYHGRRFDAERTLELLERYGVTTFCAPPTAYRML--- 186

Query: 330 ISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAML 389
                                     +++ +             FS +R          +
Sbjct: 187 --------------------------LQQDLSSYD---------FSHLRHV--------V 203

Query: 390 SGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMI--GTVGVPMTTVEA 447
           S   PL   V ++ R  +G P+  GYG TE+              +  G++G P      
Sbjct: 204 SAGEPLNPEVIDWWRAATGLPIRDGYGQTETGLLVANFPG---MEVKPGSMGRPAPGY-- 258

Query: 448 RLESVPEMGYDALSSVPRGEICL----RGNTLFSGYYKRPDLTEEVIVDGWFHTG 498
           R+  + + G + L     G+I +    R   LF GY K P+ TE  I   W+ TG
Sbjct: 259 RVAIIDDEG-NELPPGEEGDIAVRVKPRPPGLFRGYLKDPEKTEATIRGDWYLTG 312

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430

>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score = 55.7 bits (135), Expect = 3e-08
 Identities = 33/129 (25%), Positives = 51/129 (39%), Gaps = 35/129 (27%)

Query: 391 GAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTV----- 445
           G+A     +E+      G  +   +G+TE+              +GTV      +     
Sbjct: 288 GSALPRSLIEKLEE--RGVEVIHAWGMTETSP------------LGTVSRLKPHLVDLPE 333

Query: 446 EARLESVPEMGY-----------DALSSVPR-----GEICLRGNTLFSGYYKRPDLTEEV 489
           E +LE   + G            D  + +P      GE+ +RG  +   YYK P+ TEE+
Sbjct: 334 EEKLELRAKQGRPVPGVELRIVDDEGNELPWDGKTVGELVVRGPWVTGSYYKDPEKTEEL 393

Query: 490 IVDGWFHTG 498
             DGWF TG
Sbjct: 394 TRDGWFRTG 402

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517

>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes

 Score = 55.4 bits (134), Expect = 3e-08
 Identities = 25/72 (34%), Positives = 39/72 (54%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           LTY+E++D A RF + +R+ GV+PGDR  +   + PE + A  AC       V L   L 
Sbjct: 11  LTYRELHDLANRFANVLRALGVSPGDRVLLLLPDSPELVAAFLACLKAGAVAVALNPLLT 70

Query: 138 ANAVEFIINHAE 149
              +E I++ + 
Sbjct: 71  PQDLEHILDDSG 82

This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 55.7 bits (135), Expect = 3e-08
 Identities = 24/84 (28%), Positives = 38/84 (45%)

Query: 77  WLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTL 136
             TY E+ +   R  + + + GV PGDR  +   NCPE++ A  A N      VP+   L
Sbjct: 3   RYTYAELAERVNRLAAGLLALGVRPGDRVALMLDNCPEFLRAWFALNKLGAVAVPINTAL 62

Query: 137 GANAVEFIINHAEVSIAFVQENKI 160
               +  I++H+   +  V    I
Sbjct: 63  RGEELAHILDHSGARLIVVDTAAI 86

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed

 Score = 55.8 bits (135), Expect = 3e-08
 Identities = 39/119 (32%), Positives = 54/119 (45%), Gaps = 11/119 (9%)

Query: 384 RLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFN-MIGTVGVPM 442
            L+  L   AP+P  + E  R   GA +   +G+TE+ +   T L D       T G P+
Sbjct: 313 SLRTFLCAGAPIPGALVERARAALGAKIVSAWGMTENGAVTLTKLDDPDERASTTDGCPL 372

Query: 443 TTVEARLESVPEMGYDALSSVPRGEI---CLRGNTLFSGYYKRPDLTEEVIVDGWFHTG 498
             VE R+           + +P G+I    +RG + F GY KRP L      DGWF TG
Sbjct: 373 PGVEVRVVD------ADGAPLPAGQIGRLQVRGCSNFGGYLKRPQLN-GTDADGWFDTG 424

Length = 547

>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS)

 Score = 54.9 bits (133), Expect = 4e-08
 Identities = 19/78 (24%), Positives = 36/78 (46%)

Query: 77  WLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTL 136
            LTY E+   + R   A+ + G+ PGDR  +      E+++   A        VPL  + 
Sbjct: 11  SLTYGELDARSGRLAKALLALGLLPGDRVAVLAPKSAEYVVLYLAIWRAGGVAVPLNPSY 70

Query: 137 GANAVEFIINHAEVSIAF 154
            A  + +I++ ++ S+  
Sbjct: 71  PAAELAYILSDSQPSLLV 88

MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 55.3 bits (133), Expect = 6e-08
 Identities = 78/425 (18%), Positives = 131/425 (30%), Gaps = 89/425 (20%)

Query: 78   LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
            L+Y E+   A R    +  RGV P    G+      E ++ + A       YVPL     
Sbjct: 3083 LSYAELNRRANRLAHRLIERGVGPDVLVGVAVERSLEMVVGLLAILKAGGAYVPLDPEYP 3142

Query: 138  ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
               + +++  +   +   Q +    +   +    L                +  E     
Sbjct: 3143 EERLAYMLEDSGAQLLLSQSHLRLPLAQGVQVLDL---------------DRGDENYA-- 3185

Query: 198  CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV 257
                E    + T+          N++ ++YTSG+TG+PKGV + + A+   +  + Q + 
Sbjct: 3186 ----EANPAIRTM--------PENLAYVIYTSGSTGKPKGVGIRHSALSNHLCWMQQAYG 3233

Query: 258  VTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFS 317
            +       + T FSF                                    +EL   + S
Sbjct: 3234 LGVGDRVLQFTTFSFDVFV--------------------------------EELFWPLMS 3261

Query: 318  GVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKI 377
            G   V                     L     N +  ++    P    A L +       
Sbjct: 3262 GARVVLA----------GPEDWRDPALLVELINSEGVDVLHAYPSMLQAFLEEEDAHR-- 3309

Query: 378  REAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESC-SGCFTSLADVFNMIG 436
                    + +  G A      +   +V +G PL   YG TE+  +       +      
Sbjct: 3310 ---CTSLKRIVCGGEALPA---DLQQQVFAGLPLYNLYGPTEATITVTHWQCVEEGKDAV 3363

Query: 437  TVGVPMTTVEARLESVPEMGYDALSSVPRG---EICLRGNTLFSGYYKRPDLTEEVIVDG 493
             +G P+      +         +L  VP G   E+ L G  L  GY+ RP LT E  V  
Sbjct: 3364 PIGRPIANRACYILD------GSLEPVPVGALGELYLGGEGLARGYHNRPGLTAERFVPD 3417

Query: 494  WFHTG 498
             F  G
Sbjct: 3418 PFVPG 3422

Length = 5163

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 55.2 bits (133), Expect = 7e-08
 Identities = 45/200 (22%), Positives = 79/200 (39%), Gaps = 33/200 (16%)

Query: 47  QFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCG 106
           Q     A++ P    L    V   +V     L+Y E+   A R    + + GV P    G
Sbjct: 516 QLIEAQARQHPERPAL----VFGEQV-----LSYAELNRQANRLAHVLIAAGVGPDVLVG 566

Query: 107 IYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSC 166
           I      E ++ + A       YVPL      + + ++++ + V +   Q      +L+ 
Sbjct: 567 IAVERSIEMVVGLLAVLKAGGAYVPLDPEYPQDRLAYMLDDSGVRLLLTQ----SHLLAQ 622

Query: 167 LPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIM 226
           LP            A + S    E  +L         +      +  L P    N++ ++
Sbjct: 623 LPVP----------AGLRSLCLDEPADL------LCGYSGHNP-EVALDPD---NLAYVI 662

Query: 227 YTSGTTGEPKGVVLTNQAIV 246
           YTSG+TG+PKGV +++ A+ 
Sbjct: 663 YTSGSTGQPKGVAISHGALA 682

Length = 3956

>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed

 Score = 54.0 bits (130), Expect = 1e-07
 Identities = 33/120 (27%), Positives = 51/120 (42%), Gaps = 14/120 (11%)

Query: 385 LQAMLSGAAPLPIH-VEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFN-MIGTVGVPM 442
           L+  L G   +P     E  +   G  L   YG TES      +L D  +  + T G   
Sbjct: 304 LRFFLCGGTTIPKKVARECQQ--RGIKLLSVYGSTESSPHAVVNLDDPLSRFMHTDGYAA 361

Query: 443 TTVEARLESVPEMGYDALSSVPRG---EICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTG 498
             VE ++        +A  ++P G   E   RG  +F GY   P+LT   +  +GW+++G
Sbjct: 362 AGVEIKVVD------EARKTLPPGCEGEEASRGPNVFMGYLDEPELTARALDEEGWYYSG 415

Length = 547

>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA)

 Score = 53.7 bits (130), Expect = 1e-07
 Identities = 24/87 (27%), Positives = 38/87 (43%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           LTY E+ + A R  + + + G   GD   +YG   P+   A+ AC      YVPL  +  
Sbjct: 17  LTYAELKERADRLAARLLALGGRAGDPVAVYGHKSPDAYAAILACLKAGAAYVPLDPSQP 76

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSIL 164
           A  +  I+  A  +      + +  IL
Sbjct: 77  AERIAKILEAAGPAALVADPDDLAYIL 103

DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447

>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated

 Score = 53.4 bits (129), Expect = 1e-07
 Identities = 42/205 (20%), Positives = 75/205 (36%), Gaps = 23/205 (11%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           +TY E+   + R    +R+ G+  GD   I   N PE+     A     + Y P+   L 
Sbjct: 12  VTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLT 71

Query: 138 ANAVEFIINHAEVSIAFVQENKIPS---ILSCLPRCCLYLKTIVSFANVSSSQKKEAEEL 194
           A  + +I++ +   +  V      +   + + LP     L  +             A  +
Sbjct: 72  AAEIAYIVDDSGAKVLIVSAALADTAAELAAELPAGVPLLLVV-------------AGPV 118

Query: 195 GVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVV--LTNQAIVAEVLSV 252
                 +  + +      + P   +T  + ++Y+SGTTG PKG+   L       E   +
Sbjct: 119 P----GFRSYEEALAAQPDTPIADETAGADMLYSSGTTGRPKGIKRPLPGLDP-DEAPGM 173

Query: 253 DQMFVVTGKVCSEEDTYFSFLPLAH 277
               +  G     +  Y S  PL H
Sbjct: 174 MLALLGFGMYGGPDSVYLSPAPLYH 198

Length = 502

>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated

 Score = 53.4 bits (129), Expect = 2e-07
 Identities = 37/115 (32%), Positives = 59/115 (51%), Gaps = 13/115 (11%)

Query: 391 GAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLE 450
           G A +P  V E L+  +G    +GYGLTE+ +   ++  D   +   +G+P   V+AR+ 
Sbjct: 313 GGAAMPEAVAERLKELTGLDYVEGYGLTETMAQTHSNPPDRPKL-QCLGIPTFGVDARV- 370

Query: 451 SVPEMGYDALSSVPR---GEICLRGNTLFSGYYKRPDLTEEVIV--DG--WFHTG 498
               +  + L  +P    GEI + G  +F GY+ RP+ T E  +  DG  +F TG
Sbjct: 371 ----IDPETLEELPPGEVGEIVVHGPQVFKGYWNRPEATAEAFIEIDGKRFFRTG 421

Length = 546

>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 53.1 bits (128), Expect = 2e-07
 Identities = 28/87 (32%), Positives = 41/87 (47%)

Query: 79  TYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGA 138
           T+ ++ DA+ R  +A+R  GV  GDR G+Y    PE  IA  A        VPL    G 
Sbjct: 8   TFGQLKDASNRLANALRELGVERGDRVGVYLPQSPETAIAHLAVYKLGAVSVPLSVLFGP 67

Query: 139 NAVEFIINHAEVSIAFVQENKIPSILS 165
           +AVE  +  +   +     +  P+IL 
Sbjct: 68  DAVEHRLRDSGARVLVTDGSDDPAILI 94

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439

>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional

 Score = 53.2 bits (128), Expect = 2e-07
 Identities = 44/203 (21%), Positives = 74/203 (36%), Gaps = 16/203 (7%)

Query: 77  WLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTL 136
             TY E   AA     A+ + GV  GDR  +   N  E++     C       VP+   L
Sbjct: 46  RWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDVFLGCAWLGAIAVPINTAL 105

Query: 137 GANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGV 196
               +E I+ ++   +  V+   + ++ +  P   L L  +      +S           
Sbjct: 106 RGPQLEHILRNSGARLLVVEAALLAALEAADPGD-LPLPAVWLLDAPASVSVPAG----- 159

Query: 197 SCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTN-QAIVAEVLSVDQM 255
             +S      L         +   + + I+YTSGTTG  KGV   + Q       S + +
Sbjct: 160 --WSTAPLPPLDAPAPAAAVQP-GDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDL 216

Query: 256 FVVTGKVCSEEDTYFSFLPLAHI 278
            +        +D  ++ LPL H 
Sbjct: 217 EIG------ADDVLYTTLPLFHT 233

Length = 542

>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional

 Score = 53.0 bits (128), Expect = 2e-07
 Identities = 39/175 (22%), Positives = 77/175 (44%), Gaps = 21/175 (12%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPE-WIIAMEACNSQAITYVPLYDTL 136
            TY+E+ + + +F + ++  GV  GDR  I+    PE +   + A  + AI   PL++  
Sbjct: 74  YTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFALLGALKNGAI-VGPLFEAF 132

Query: 137 GANAVEFIINHAE----VSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAE 192
              AV   +  +E    ++   + E K    L  L       K ++           E  
Sbjct: 133 MEEAVRDRLEDSEAKVLITTPALLERKPADDLPSL-------KHVLLVG--------EDV 177

Query: 193 ELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVA 247
           E G     +   ++  + + ++    + + + + YTSG+TG+PKGV+  + A++ 
Sbjct: 178 EEGPGTLDFNALMEQASDEFDIEWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQ 232

Length = 570

>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed

 Score = 52.4 bits (126), Expect = 3e-07
 Identities = 50/207 (24%), Positives = 82/207 (39%), Gaps = 26/207 (12%)

Query: 79  TYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGA 138
           TY  +  AA R  + + ++G+ PGDR         E+ I   AC       VPL  +   
Sbjct: 51  TYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLACLKVGAVSVPLLPSWRE 110

Query: 139 NAVEFIIN--HAEVSIA---FVQENKIPSILSC---LPRCCLYLKTIVSFANVSSSQKKE 190
             + +++N   A++  A   F Q   +  IL     LP     L+ IV          K 
Sbjct: 111 AELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQNQLP----QLQQIVGV-------DKL 159

Query: 191 AEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVL 250
           A     S  S  + +                ++ +++TSGT G PKGV+LT+  I+A   
Sbjct: 160 APAT--SSLSLSQIIADYEPLTTAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILAS-- 215

Query: 251 SVDQMFVVTGKVCSEEDTYFSFLPLAH 277
             ++ +     +   +D +    PL H
Sbjct: 216 --ERAYCARLNLTW-QDVFMMPAPLGH 239

Length = 547

>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

 Score = 52.6 bits (127), Expect = 3e-07
 Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 5/64 (7%)

Query: 214 LPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFL 273
            P  K  + +TI+++SG+ GEPKGV+L++  I++ +  +  +F +       +D   S L
Sbjct: 776 GPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVFNLR-----NDDVILSSL 830

Query: 274 PLAH 277
           P  H
Sbjct: 831 PFFH 834

Length = 1146

>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents

 Score = 52.3 bits (126), Expect = 4e-07
 Identities = 52/227 (22%), Positives = 90/227 (39%), Gaps = 31/227 (13%)

Query: 73  GPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPL 132
           G   + +Y E+ + A R  + +R+ G+ PGD   +      +++ A  AC       VP+
Sbjct: 35  GSEEFQSYAELLEEAERILAGLRALGLKPGDSVILQLERNEDFVTAFWACVLGGFVPVPV 94

Query: 133 YDTLGANAVEFIINHAEVSIAFVQENKIPSILSCL--PRCCLYLKTIVSFANVSSSQK-- 188
                        N A          K+ +I   L  P        +   A V++     
Sbjct: 95  ----AVPPTYDEPNAAV--------AKLRNIWELLGSPVI------LTDAALVAALAGLR 136

Query: 189 KEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAE 248
             A    +   + EE       D  L P +  + + ++ TSG+TG PK VVLT++ I+A 
Sbjct: 137 TRAGLEALRVLAIEELRSAPP-DAPLHPARPDDPALLLLTSGSTGVPKCVVLTHRNILAR 195

Query: 249 VLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETH--CIHKGCS 293
                Q+   T      +D   +++PL H+   I+  H   ++ GC 
Sbjct: 196 SAGTVQVNGFT-----PDDVSLNWMPLDHV-GGIVMLHLRDVYLGCQ 236

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 52.7 bits (126), Expect = 4e-07
 Identities = 89/425 (20%), Positives = 144/425 (33%), Gaps = 93/425 (21%)

Query: 78   LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
            LTY E+   A R   A+ +RGV P    GI      E ++ + A       YVPL     
Sbjct: 4577 LTYAELNRRANRLAHALIARGVGPEVLVGIAMERSAEMMVGLLAVLKAGGAYVPLDPEYP 4636

Query: 138  ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
               + +++  +  ++   Q +    +L  LP              ++S      E+    
Sbjct: 4637 RERLAYMMEDSGAALLLTQSH----LLQRLP----------IPDGLASLALDRDED---- 4678

Query: 198  CFSWEEFLQLGTLDCELPPKKKT---NISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQ 254
               WE F           P  +    N++ ++YTSG+TG PKGV +++ ++V  + +  +
Sbjct: 4679 ---WEGF-------PAHDPAVRLHPDNLAYVIYTSGSTGRPKGVAVSHGSLVNHLHATGE 4728

Query: 255  MFVVTGKVCSEEDTYFSFLPLAH--IYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELK 312
             + +T      +   FSF   +H  +Y  +I    +        W  D   L  +I E +
Sbjct: 4729 RYELTPDDRVLQFMSFSF-DGSHEGLYHPLINGASVVIRDD-SLW--DPERLYAEIHEHR 4784

Query: 313  PTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSL 372
             T+    P                            Y  +L        ++   P L   
Sbjct: 4785 VTVLVFPP---------------------------VYLQQLAE---HAERDGEPPSLRVY 4814

Query: 373  VFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVF 432
             F    EA       +   A                  L  GYG TE+        A   
Sbjct: 4815 CFGG--EAVAQASYDLAWRALK-------------PVYLFNGYGPTETTVTVLLWKARDG 4859

Query: 433  NMIGTVGVPMTTVEARLESVPEMGY---DALSSVP---RGEICLRGNTLFSGYYKRPDLT 486
            +  G   +P+ T           GY     L+ +P    GE+ L G  +  GY +RP LT
Sbjct: 4860 DACGAAYMPIGTPLGNRS-----GYVLDGQLNPLPVGVAGELYLGGEGVARGYLERPALT 4914

Query: 487  EEVIV 491
             E  V
Sbjct: 4915 AERFV 4919

Length = 5163

>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 52.0 bits (125), Expect = 4e-07
 Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 7/124 (5%)

Query: 378 REAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNM-IG 436
           R  +  RL+A+ SG   L   + E+ R   G  + + YG TE  +    + A +     G
Sbjct: 202 RARYDLRLRAVASGGESLGEELLEWARDELGLTVNEFYGQTE-ANLVVGNCAALGPARPG 260

Query: 437 TVGVPMTTVEARLESVPEMGYDALSSVPRGEICL-RGN-TLFSGYYKRPDLTEEVIVDGW 494
           ++G P+      +  V + G         GEI + R +  +F GY+  P+ T       W
Sbjct: 261 SMGKPVPG--HEVAVVDDAGRPVPPGE-VGEIAVKRPDPVMFLGYWNNPEATAAKFAGDW 317

Query: 495 FHTG 498
             TG
Sbjct: 318 LLTG 321

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439

>gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional

 Score = 52.5 bits (127), Expect = 4e-07
 Identities = 20/45 (44%), Positives = 28/45 (62%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC 122
           +TY+E++    RF +A++S GV  GDR  IY    PE  +AM AC
Sbjct: 99  ITYRELHREVCRFANALKSLGVKKGDRVAIYMPMIPEAAVAMLAC 143

Length = 637

>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase

 Score = 52.2 bits (125), Expect = 4e-07
 Identities = 35/118 (29%), Positives = 50/118 (42%), Gaps = 11/118 (9%)

Query: 385 LQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTV-GVPMT 443
           L   L   AP+P  + E      GA +   +G+TE+ +   T   D      T  G P+ 
Sbjct: 312 LFTFLCAGAPIPGILVERAWELLGALIVSAWGMTENGAVTVTEPDDALEKASTTDGRPLP 371

Query: 444 TVEARLESVPEMGYDALSSVPRGEI---CLRGNTLFSGYYKRPDLTEEVIVDGWFHTG 498
            VE ++         A   + +GE     +RG + F GY KRP L      +GWF TG
Sbjct: 372 GVEVKVID----ANGA--KLSQGETGRLLVRGCSNFGGYLKRPHLN-STDAEGWFDTG 422

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 52.3 bits (125), Expect = 5e-07
 Identities = 42/183 (22%), Positives = 70/183 (38%), Gaps = 32/183 (17%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           L Y E+   A R   A+  RGV P    G+      E ++A+ A       YVPL     
Sbjct: 537 LDYAELNRRANRLAHALIERGVGPDVLVGVAMERSIEMVVALLAILKAGGAYVPLDPEYP 596

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
           A  + +++  + V +   Q +        LP                      A  + V 
Sbjct: 597 AERLAYMLEDSGVQLLLSQSHLGRK----LPL---------------------AAGVQVL 631

Query: 198 CF----SWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVD 253
                 +W E         EL P+   N++ ++YTSG+TG+PKG    ++A+   +  + 
Sbjct: 632 DLDRPAAWLEGYSEENPGTELNPE---NLAYVIYTSGSTGKPKGAGNRHRALSNRLCWMQ 688

Query: 254 QMF 256
           Q +
Sbjct: 689 QAY 691

Length = 5163

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 51.9 bits (124), Expect = 7e-07
 Identities = 49/201 (24%), Positives = 83/201 (41%), Gaps = 37/201 (18%)

Query: 78   LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
            L+Y E+   A R    +R+RGV P  R  I      E ++A+ A       YVPL D   
Sbjct: 2029 LSYAELDSRANRLAHRLRARGVGPEVRVAIAAERSFELVVALLAVLKAGGAYVPL-D--- 2084

Query: 138  ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEEL--- 194
                    N+    +A++ E+                    S A +  +Q+   E L   
Sbjct: 2085 -------PNYPAERLAYMLED--------------------SGAALLLTQRHLLERLPLP 2117

Query: 195  -GVSCFSWEEFLQLGTLDCELPPKK--KTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLS 251
             GV+    +   +        P  +    N++ ++YTSG+TG PKGV +++ A+VA   +
Sbjct: 2118 AGVARLPLDRDAEWADYPDTAPAVQLAGENLAYVIYTSGSTGLPKGVAVSHGALVAHCQA 2177

Query: 252  VDQMFVVTGKVCSEEDTYFSF 272
              + + ++   C  +   FSF
Sbjct: 2178 AGERYELSPADCELQFMSFSF 2198

Length = 5163

>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase

 Score = 51.2 bits (123), Expect = 8e-07
 Identities = 21/78 (26%), Positives = 36/78 (46%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           +TY E+ +   R    ++ +GV  GDR  +Y  N P+++IA  A        VP+     
Sbjct: 2   ITYAELLELVDRLAGLLQEKGVRKGDRVALYMQNSPQFVIAYYAILRAGAVVVPVNPMNR 61

Query: 138 ANAVEFIINHAEVSIAFV 155
              +E I+N +   +  V
Sbjct: 62  EAELEHILNDSGARVLIV 79

The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430

>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional

 Score = 50.9 bits (122), Expect = 1e-06
 Identities = 35/120 (29%), Positives = 50/120 (41%), Gaps = 10/120 (8%)

Query: 382 GGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVP 441
             R++  L    P  +H     R   G  L  GYG TE+      +        G++G  
Sbjct: 293 AHRVRVALGPGVPAALHAAFRERF--GVDLLDGYGSTETNFVIAVTHGS--QRPGSMGRL 348

Query: 442 MTTVEARLESVPEMGYDALSSVPRGEICLRGNTLF---SGYYKRPDLTEEVIVDGWFHTG 498
               EAR+  V E   +     P GE+ LR +  F   +GY+  P+ T E   + WFHTG
Sbjct: 349 APGFEARV--VDEHDQELPDGEP-GELLLRADEPFAFATGYFGMPEKTVEAWRNLWFHTG 405

Length = 542

>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase

 Score = 50.6 bits (122), Expect = 1e-06
 Identities = 20/76 (26%), Positives = 40/76 (52%)

Query: 77  WLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTL 136
            L+Y E+ + + +  + +R+ GV PGDR G+      + + A+ A       YVPL  + 
Sbjct: 12  TLSYAELDERSNQLAARLRALGVGPGDRVGVLLERSADLVAALLAILKAGAAYVPLDPSY 71

Query: 137 GANAVEFIINHAEVSI 152
            A  +++++  AE ++
Sbjct: 72  PAERLQYMLEDAEPAL 87

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438

>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 32/106 (30%), Positives = 46/106 (43%), Gaps = 29/106 (27%)

Query: 408 GAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESV--PEMGYDA------ 459
           G  L   YG+TE+             ++G +G      + R  S+  P   Y+A      
Sbjct: 312 GVRLLTSYGMTET-------------IVGIIGDRPGD-KRRWPSIGRPGFCYEAEIRDDH 357

Query: 460 ---LSSVPRGEICLRG---NTLFSGYYKRPDLTEEVI-VDGWFHTG 498
              L +   GEIC++G    T+F  YY  P  T +V+  DGW HTG
Sbjct: 358 NRPLPAGEIGEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTG 403

Length = 517

>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated

 Score = 50.5 bits (121), Expect = 2e-06
 Identities = 59/253 (23%), Positives = 103/253 (40%), Gaps = 23/253 (9%)

Query: 79  TYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACN-SQAITYVPLYDTLG 137
           TY++    A +   A+ + GV PGDR G    N    + A    + S A+ +  +   L 
Sbjct: 41  TYRDCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYYGVSGSGAVCHT-INPRLF 99

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
              + +I+NHAE          +P + +  P+C      +  +  ++ +    A    + 
Sbjct: 100 PEQIAYIVNHAEDRYVLFDLTFLPLVDALAPQC----PNVKGWVAMTDAAHLPAGSTPLL 155

Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIV----AEVLSVD 253
           C+  E  +     D + P   +   S++ YTSGTTG PKG + ++++ V       L  D
Sbjct: 156 CY--ETLVGAQDGDYDWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALP-D 212

Query: 254 QMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG---DVRYLMEDIQE 310
            M        S  D     +P+ H+    +       G  +    G   D + L E I+ 
Sbjct: 213 AM------GLSARDAVLPVVPMFHVNAWGLPYSAPLTGAKLVL-PGPDLDGKSLYELIEA 265

Query: 311 LKPTMFSGVPRVY 323
            + T  +GVP V+
Sbjct: 266 ERVTFSAGVPTVW 278

Length = 539

>gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated

 Score = 49.8 bits (119), Expect = 2e-06
 Identities = 79/300 (26%), Positives = 112/300 (37%), Gaps = 82/300 (27%)

Query: 217 KKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLA 276
           K   +++ I++TSGT   PKGV LT+  ++A   +  + F        E+D   SFLP  
Sbjct: 180 KDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFFSPK-----EDDVMMSFLPPF 234

Query: 277 HIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISS 336
           H Y               GF          +   L P + SGVP V+           + 
Sbjct: 235 HAY---------------GF----------NSCTLFP-LLSGVPVVF-----------AY 257

Query: 337 GGALSKKLFEFA--------------YNYKLGNMKKGMPQNKAAPLLDSLVFSKI-REAF 381
                KK+ E                ++Y L   KK   Q      L SL F  I  +AF
Sbjct: 258 NPLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKK---QESC---LPSLRFVVIGGDAF 311

Query: 382 GGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFT-SLADVFNMIGTVGV 440
              L              +E L+      L QGYG TE CS   T +  +       VG+
Sbjct: 312 KDSLY-------------QEALKTFPHIQLRQGYGTTE-CSPVITINTVNSPKHESCVGM 357

Query: 441 PMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDG--WFHTG 498
           P+  ++  +  V E     +SS   G +  RG +LFSGY         V + G  W+ TG
Sbjct: 358 PIRGMDVLI--VSEETKVPVSSGETGLVLTRGTSLFSGYLGEDFGQGFVELGGETWYVTG 415

Length = 539

>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase

 Score = 49.6 bits (119), Expect = 3e-06
 Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 3/89 (3%)

Query: 69  DGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAIT 128
           DG V  +   TY E+     R  S + + G+  GDR GIY    PE ++A+ A       
Sbjct: 2   DGSVRTW---TYSELAREVNRLASGLAALGLGKGDRVGIYMPMIPEAVVALLAIAKIGAI 58

Query: 129 YVPLYDTLGANAVEFIINHAEVSIAFVQE 157
            VP++   G +AV   +  AE  +    +
Sbjct: 59  AVPIFSGFGPDAVATRLQDAEAKVLITAD 87

This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474

>gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1

 Score = 49.4 bits (118), Expect = 3e-06
 Identities = 34/161 (21%), Positives = 61/161 (37%), Gaps = 27/161 (16%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           LTYQ++ + + R  + ++ R +       +YG   P  ++A          Y+P+  ++ 
Sbjct: 26  LTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSIKSGHAYIPVDTSIP 85

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
           +  +E II  A      +   ++                      ++ S  ++AE  G  
Sbjct: 86  SERIEMIIEAAGPE-LVIHTAELSIDAVGTQI-------------ITLSALEQAETSG-- 129

Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGV 238
                     G +  +   K   N   I YTSG+TG PKGV
Sbjct: 130 ----------GPVSFDHAVKGDDNYYII-YTSGSTGNPKGV 159

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502

>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 48.9 bits (117), Expect = 4e-06
 Identities = 15/71 (21%), Positives = 29/71 (40%)

Query: 79  TYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGA 138
           T+ E+ + + R  + ++  GV  GDR  +     PE    +  C      ++P    LG 
Sbjct: 2   TFAELKEESDRAANFLKDLGVGRGDRVAVLLPRVPELWAVILGCIKLGAVFIPGTTQLGP 61

Query: 139 NAVEFIINHAE 149
             + + +  A 
Sbjct: 62  KDIRYRLERAG 72

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430

>gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

 Score = 48.4 bits (116), Expect = 6e-06
 Identities = 33/161 (20%), Positives = 57/161 (35%), Gaps = 27/161 (16%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           LTY ++ + +    + + S  +       ++G   PE +            Y+P+  +  
Sbjct: 28  LTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPEMLATFLGAVKAGHAYIPVDVSSP 87

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
           A  +E II  A+ S+    E     IL            +++   +              
Sbjct: 88  AERIEMIIEVAKPSLIIATEELPLEILGI---------PVITLDELK------------- 125

Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGV 238
               + F      D +   K   N   I +TSGTTG+PKGV
Sbjct: 126 ----DIFATGNPYDFDHAVKGDDNYYII-FTSGTTGKPKGV 161

Length = 503

>gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase

 Score = 48.0 bits (115), Expect = 8e-06
 Identities = 20/45 (44%), Positives = 27/45 (60%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC 122
           +TY+E++    RF + ++S GV  GDR  IY    PE  IAM AC
Sbjct: 89  ITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAMLAC 133

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625

>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme)

 Score = 47.5 bits (114), Expect = 1e-05
 Identities = 21/45 (46%), Positives = 27/45 (60%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC 122
           +TY+E+Y    RF + ++S GV  GDR  IY    PE  IAM AC
Sbjct: 79  ITYRELYREVCRFANVLKSLGVKKGDRVAIYMPMIPELPIAMLAC 123

Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602

>gnl|CDD|233316 TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase

 Score = 47.2 bits (112), Expect = 2e-05
 Identities = 43/182 (23%), Positives = 71/182 (39%), Gaps = 11/182 (6%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           +T+ E+        +A+R+ GV PGDR   Y  N P+ ++AM A  S    +       G
Sbjct: 115 VTWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAVVAMLATASVGAIWSSCSPDFG 174

Query: 138 ANAVEFIINHAEVSIAFVQE-----NKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAE 192
           A  V       E  + F  +      K       +      L T+ +  ++     +E E
Sbjct: 175 ARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRKELPTLRAVVHIPYLGPRETE 234

Query: 193 ELGV-SCFSWEEFL---QLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAE 248
              +      E+F    Q   L  E  P    +   I+++SGTTG PK +V +    + +
Sbjct: 235 APKIDGALDLEDFTAAAQAAELVFEQLP--FDHPLWILFSSGTTGLPKCIVHSAGGTLVQ 292

Query: 249 VL 250
            L
Sbjct: 293 HL 294

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway [Central intermediary metabolism, Other]. Length = 652

>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 46.8 bits (112), Expect = 2e-05
 Identities = 29/88 (32%), Positives = 37/88 (42%), Gaps = 25/88 (28%)

Query: 414 GYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGN 473
           GYGLTE  S      AD    +  VG P+   E +L                GEI LRG 
Sbjct: 270 GYGLTEMASTVCAKRAD---GLAGVGSPLPGREVKLVD--------------GEIWLRGA 312

Query: 474 TLFSGYYK----RPDLTEEVIVDGWFHT 497
           +L  GY++     P L  +   +GWF T
Sbjct: 313 SLALGYWRQGQLVP-LVND---EGWFAT 336

Length = 458

>gnl|CDD|235134 PRK03584, PRK03584, acetoacetyl-CoA synthetase; Provisional

 Score = 46.3 bits (111), Expect = 3e-05
 Identities = 21/58 (36%), Positives = 31/58 (53%)

Query: 67  VSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNS 124
           +  G+ GP   L++ E+        +A+R+ GV PGDR   Y  N PE ++AM A  S
Sbjct: 104 IFRGEDGPRRELSWAELRRQVAALAAALRALGVGPGDRVAAYLPNIPETVVAMLATAS 161

Length = 655

>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

 Score = 46.1 bits (110), Expect = 4e-05
 Identities = 39/127 (30%), Positives = 56/127 (44%), Gaps = 23/127 (18%)

Query: 389  LSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADV---------FNMIGTVG 439
            ++GA  L   V +      G  + +GYG TE+      +L DV          +  G+VG
Sbjct: 904  VAGAEKLKPEVADAFEEKFGIRILEGYGATETSPVASVNLPDVLAADFKRQTGSKEGSVG 963

Query: 440  VPMTTVEARLESV-PEMGYDALSSVPRGE---ICLRGNTLFSGYYKRPDLTEEVIVD--- 492
            +P+  V  R+  V PE        +P GE   I + G  +  GY   P+ T EVI D   
Sbjct: 964  MPLPGVAVRI--VDPE----TFEELPPGEDGLILIGGPQVMKGYLGDPEKTAEVIKDIDG 1017

Query: 493  -GWFHTG 498
             GW+ TG
Sbjct: 1018 IGWYVTG 1024

Length = 1146

>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase

 Score = 45.9 bits (109), Expect = 4e-05
 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 13/62 (20%)

Query: 221 NISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVC----SEEDTYFSFLPLA 276
           +   I +TSGTTG PKGV +++ A++ + L+         K+      E+D Y    PL 
Sbjct: 173 DAVLICFTSGTTGRPKGVTISHSALIVQSLA---------KIAIVGYGEDDVYLHTAPLC 223

Query: 277 HI 278
           HI
Sbjct: 224 HI 225

Length = 563

>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C)

 Score = 45.2 bits (108), Expect = 5e-05
 Identities = 43/140 (30%), Positives = 58/140 (41%), Gaps = 27/140 (19%)

Query: 366 APLLDSLVFSKIREAFGGRLQAMLSG--AAPLPIHVEEFLRVTSGAPLTQGYGLTE---- 419
           A L + LV  +  EA  G L+ +L G        HV   L    G  L  GYG TE    
Sbjct: 225 AALFNQLV-DEDPEALAG-LRQLLVGGDVLSPA-HVRRVLAACPGLRLINGYGPTENTTF 281

Query: 420 SCSGCFTSLADVFNMIGTV--GVPM--TTV---EARLESVPEMGYDALSSVPRGEICLRG 472
           S   C   +  +     ++  G P+  TTV   +   + VP         VP GE+ + G
Sbjct: 282 ST--CH-VITRLDEAADSIPIGRPIPNTTVYILDEEGQPVPI-------GVP-GELYVGG 330

Query: 473 NTLFSGYYKRPDLTEEVIVD 492
           + L  GY  RP+LT E  V 
Sbjct: 331 DGLALGYLNRPELTAERFVP 350

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474

>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA)

 Score = 45.3 bits (108), Expect = 5e-05
 Identities = 24/124 (19%), Positives = 36/124 (29%), Gaps = 32/124 (25%)

Query: 394 PLPI-HVEEFLRVTSGAPLTQGYGLTESCSGC------------FTSLADVFNMIGTV-- 438
            LP    +   R    A +   YG TE+                   L      IG    
Sbjct: 225 VLPKKLAKALRRRFPNARIINLYGPTEATVAVTAYEVTPEPLSRNEPLP-----IGYPKP 279

Query: 439 GVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVD----GW 494
           G+    ++     VP            GE+ + G  +  GY   P+ T +         W
Sbjct: 280 GLRALILDEDGRPVPP--------GEEGELVIAGPQVSPGYLNNPEKTAKAFFQDEGQRW 331

Query: 495 FHTG 498
           + TG
Sbjct: 332 YRTG 335

DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447

>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase

 Score = 45.3 bits (108), Expect = 5e-05
 Identities = 38/120 (31%), Positives = 49/120 (40%), Gaps = 22/120 (18%)

Query: 388 MLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTE----SCSGCFTSLADVFNMIGTVGVPM- 442
            L G   LP  + E L  T GA L   YG TE    S     T+         T+G P+ 
Sbjct: 211 ALCGGEALPRDLAERLLST-GAELWNMYGPTETTIWSTCARVTAADGP----VTIGRPIA 265

Query: 443 -TTV---EARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTG 498
            T V   +  L+ VP         VP GE+ + G+ +  GY  RP+LT E  V   F   
Sbjct: 266 NTQVYVLDEDLQPVPP-------GVP-GELYIGGDGVARGYLGRPELTAERFVPDPFDDP 317

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438

>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS)

 Score = 45.1 bits (107), Expect = 6e-05
 Identities = 17/64 (26%), Positives = 27/64 (42%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
            +YQE+ + + RF + + S GV  G+R        PE  +A          Y PL+   G
Sbjct: 1   YSYQELKELSARFANVLASLGVGKGERVFTLLPRSPELYVAALGTLKLGAVYGPLFSAFG 60

Query: 138 ANAV 141
              +
Sbjct: 61  PEPI 64

This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443

>gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi

 Score = 45.1 bits (107), Expect = 6e-05
 Identities = 28/117 (23%), Positives = 50/117 (42%), Gaps = 20/117 (17%)

Query: 223 STIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQI 282
           + ++YTSGTTG PKG  ++ +        V    +         D  ++ +PL H     
Sbjct: 90  AALIYTSGTTGLPKGCAISWRR-----TLVTSNPLSHDLNLQFPDRTYTCMPLYHGTAAF 144

Query: 283 IET-HCIHKGCSIG---------FWRGDVR----YLMEDIQELKPTMFSGVPRVYDR 325
           +   +C+  G ++          FW+ DVR     +++ + EL   + +  P  YDR
Sbjct: 145 LGLCYCLGSGGTLCLSRKFSASQFWK-DVRDSEATIIQYVGELCRYLLATPPSPYDR 200

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468

>gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated

 Score = 45.3 bits (108), Expect = 6e-05
 Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 13/84 (15%)

Query: 204 FLQLGTLD------CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQM-- 255
            +++  LD       +  P+   + + + YTSG+T  P GV+++++ ++A   + +Q+  
Sbjct: 138 VIEVDLLDLDSPRGSDARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIA---NFEQLMS 194

Query: 256 --FVVTGKVCSEEDTYFSFLPLAH 277
             F  TG V   + T  S+LP  H
Sbjct: 195 DYFGDTGGVPPPDTTVVSWLPFYH 218

Length = 578

>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated

 Score = 45.1 bits (107), Expect = 6e-05
 Identities = 44/204 (21%), Positives = 77/204 (37%), Gaps = 32/204 (15%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRC--GIYGSNCPEWIIAMEACNSQAITYVPLYDT 135
            +++E    +    +A+R+R ++P      G+   N PE+ + + A     I  V L  T
Sbjct: 29  TSWREHIRGSAARAAALRAR-LDPTRPPHVGVLLDNTPEFSLLLGAAALSGIVPVGLNPT 87

Query: 136 LGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELG 195
               A+   I HA+  +   +      +    P         V   NV S          
Sbjct: 88  RRGAALARDIAHADCQLVLTESAHAELLDGLDPG--------VRVINVDSPA-------- 131

Query: 196 VSCFSWEEFLQLGTLDCELPPKKKTNISTIM--YTSGTTGEPKGVVLTNQAIVAEVLSVD 253
                W + L     D E P +        M  +TSGT+G+PK V  T++ + +  + + 
Sbjct: 132 -----WADELA-AHRDAEPPFRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLA 185

Query: 254 QMFVVTGKVCSEEDTYFSFLPLAH 277
           Q F +       +D  +  +PL H
Sbjct: 186 QRFGL-----GPDDVCYVSMPLFH 204

Length = 529

>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional

 Score = 45.0 bits (106), Expect = 7e-05
 Identities = 46/187 (24%), Positives = 73/187 (39%), Gaps = 22/187 (11%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
            T+ + YD   R  +++ S  +   D   +   N P       A         P+   L 
Sbjct: 40  FTWPQTYDRCCRLAASLISLNITKNDVVSVLAPNTPAMYEMHFAVPMAGAVLNPINTRLD 99

Query: 138 ANAVEFIINHAEVSIAFVQENKIP---SILSCLPRCCLYLKTIVSFAN-VSSSQKKEAEE 193
           A ++  I+ HA+  I FV  +  P    +L  L      L   V F + +   ++  +EE
Sbjct: 100 ATSIAAILRHAKPKILFVDRSFEPLAREVLHLLSSEDSNLNLPVIFIHEIDFPKRPSSEE 159

Query: 194 LGVSCFSWEEFLQLGTLDCELPPKKKTNISTIM---------YTSGTTGEPKGVVLTNQA 244
           L      +E  +Q G    E  P     +  I          YTSGTT +PKGVV++++ 
Sbjct: 160 L-----DYECLIQRG----EPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRG 210

Query: 245 IVAEVLS 251
                LS
Sbjct: 211 AYLSTLS 217

Length = 579

>gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional

 Score = 45.0 bits (107), Expect = 9e-05
 Identities = 13/22 (59%), Positives = 18/22 (81%)

Query: 225 IMYTSGTTGEPKGVVLTNQAIV 246
           I++TSG+TG PKGV++   AIV
Sbjct: 603 IIFTSGSTGRPKGVMVGQTAIV 624

Length = 1296

>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated

 Score = 44.5 bits (105), Expect = 1e-04
 Identities = 35/161 (21%), Positives = 60/161 (37%), Gaps = 24/161 (14%)

Query: 83  VYDAAIRFGSAM-RSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAV 141
            +   I   + M  +RG+  GD   +   N   ++    A +     ++P+   L A+ V
Sbjct: 32  EFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFAASYLGAVFLPINYRLAADEV 91

Query: 142 EFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW 201
            +I+  A   +  V E         +    L    IV  A   +  ++            
Sbjct: 92  AYILGDAGAKLLLVDEE-----FDAIV--ALETPKIVIDAAAQADSRR------------ 132

Query: 202 EEFLQLGTLDC-ELPPKKKTNISTIMYTSGTTGEPKGVVLT 241
              L  G L+         T++  +MYTSGTT  PKGV+ +
Sbjct: 133 ---LAQGGLEIPPQAAVAPTDLVRLMYTSGTTDRPKGVMHS 170

Length = 497

>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase

 Score = 44.5 bits (106), Expect = 1e-04
 Identities = 17/44 (38%), Positives = 30/44 (68%), Gaps = 9/44 (20%)

Query: 225 IMYTSGTTGEPKGVVLTNQAIVAEVLSV---------DQMFVVT 259
           ++YTSG+TG+PKGV ++++A+V  +LS+         D++  VT
Sbjct: 98  VIYTSGSTGKPKGVEVSHRALVNFLLSMARRPGLGASDRLLAVT 141

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438

>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional

 Score = 44.2 bits (104), Expect = 1e-04
 Identities = 35/133 (26%), Positives = 55/133 (41%), Gaps = 25/133 (18%)

Query: 383 GRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGC-FTSLADVFNMI------ 435
           G +  +  G+ P    V++  R+  G  +   YGLTE+     F    D +N +      
Sbjct: 301 GPVHVLTGGSPPPAALVKKVQRL--GFQVMHAYGLTEATGPVLFCEWQDEWNRLPENQQM 358

Query: 436 ------GTVGVPMTTVEAR----LESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDL 485
                 G   + +  V+ +     ESVP  G         GEI ++G+++  GY K P  
Sbjct: 359 ELKARQGVSILGLADVDVKNKETQESVPRDGKTM------GEIVIKGSSIMKGYLKNPKA 412

Query: 486 TEEVIVDGWFHTG 498
           T E    GW +TG
Sbjct: 413 TSEAFKHGWLNTG 425

Length = 579

>gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP) including hsFATP2, hsFATP5, and hsFATP6, and similar proteins

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 50/240 (20%), Positives = 86/240 (35%), Gaps = 55/240 (22%)

Query: 78  LTYQEVYDAAIRFGSAMRSR-GVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTL 136
           +TY EV   + +   A+ +  G+ PGD   +   N P ++                    
Sbjct: 4   VTYAEVDKRSNQVARALLAHAGLKPGDTVALLLGNEPAFL-------------------- 43

Query: 137 GANAVEFIINHAEVSIAFVQEN-KIPSILSCLPRCCLYLKTIVSFANVSSSQKK---EAE 192
               +   +       AF+  N +  S+L C  RCC   + +V+   +  + ++      
Sbjct: 44  ---WIWLGLAKLGCPTAFLNTNIRSGSLLHCF-RCC-GARVLVADPELLEAVEEILPALR 98

Query: 193 ELGVSCF---------SWEEFLQL--GTLDCELPPKKKTNISTIM------YTSGTTGEP 235
            +GV  F              L       D E  P    +  +I       YTSGTTG P
Sbjct: 99  AMGVRVFYLSHTSPPEGVISLLAKVDAASD-EPVPASLRSGVSIRSTALYIYTSGTTGLP 157

Query: 236 KGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETH-CIHKGCSI 294
           K   +++      VL    M  + G   + +D  ++ LPL H    ++    CI  G ++
Sbjct: 158 KAARISHL----RVLQCSGMLSLCG--VTADDVVYTTLPLYHSSGALLGIVGCIGLGATL 211

Fatty acid transport proteins (FATP) of this family transport long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes hsFATP2, hsFATP5, and hsFATP6, and similar proteins. Each FATP has unique patterns of tissue distribution. These FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. The hsFATP proteins exist in two splice variants; the b variant, lacking exon 3, has no acyl-CoA synthetase activity. FATPs are key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 535

>gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 17/45 (37%), Positives = 24/45 (53%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC 122
            T+++++D   R  + +RS GV  GDR  IY     E   AM AC
Sbjct: 85  YTFRQLHDEVNRMAAMLRSLGVQRGDRVLIYMPMIAEAAFAMLAC 129

Length = 629

>gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase

 Score = 44.5 bits (105), Expect = 1e-04
 Identities = 49/197 (24%), Positives = 74/197 (37%), Gaps = 54/197 (27%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           LTY E+ D   +  + ++  GV  GD   IY     E  IAM AC             +G
Sbjct: 121 LTYSELLDRVCQLANYLKDVGVKKGDAVVIYLPMLMELPIAMLACAR-----------IG 169

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCL------------YLKTIVSFANVSS 185
           A        H+ V   F  E+    I+ C P+  +             LK IV  A   S
Sbjct: 170 A-------VHSVVFAGFSAESLAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDES 222

Query: 186 SQKKEAEELGVSCFS---------------------WEEFLQLGTLDCELPPKKKTNIST 224
           +  K    +G+ C +                     W++ +      CE+      +   
Sbjct: 223 A--KNGVSVGI-CLTYENQLAMKREDTKWQEGRDVWWQDVVPNYPTKCEVEWVDAEDPLF 279

Query: 225 IMYTSGTTGEPKGVVLT 241
           ++YTSG+TG+PKGV+ T
Sbjct: 280 LLYTSGSTGKPKGVLHT 296

Length = 666

>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS)

 Score = 44.1 bits (105), Expect = 1e-04
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 5/52 (9%)

Query: 225 IMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLA 276
           ++YTSG+TG+PKGVV+T++ I   + +   +  +        D    F  +A
Sbjct: 104 VIYTSGSTGKPKGVVITHRNICNFLRAEGAILGIR-----PGDRVLQFASIA 150

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447

>gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase

 Score = 44.1 bits (104), Expect = 1e-04
 Identities = 19/45 (42%), Positives = 26/45 (57%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC 122
           LTY++++     F SA+R+ GV  GDR  IY     E + AM AC
Sbjct: 84  LTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAMLAC 128

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. Length = 628

>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS)

 Score = 43.6 bits (104), Expect = 2e-04
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 10/84 (11%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAI-----TYVPL 132
           LTY+E+ + A R    +R+RGV PGD   I     PE ++A+      A+      YVPL
Sbjct: 13  LTYRELNERANRLAHYLRARGVGPGDLVAICLERSPEMVVAI-----LAVLKAGAAYVPL 67

Query: 133 YDTLGANAVEFIINHAEVSIAFVQ 156
                A  + +++  +   +    
Sbjct: 68  DPAYPAERLAYMLEDSGAKLLLTD 91

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445

>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase

 Score = 43.4 bits (102), Expect = 2e-04
 Identities = 43/213 (20%), Positives = 75/213 (35%), Gaps = 22/213 (10%)

Query: 73  GPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPL 132
           G     +Y+E+     R    +   GV  GD       N  E+     AC        PL
Sbjct: 49  GAVRRFSYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLACARIGAVLNPL 108

Query: 133 YDTLGANAVEFIINHAEVSI--------AFVQENKIPSILSCLPRCCLYLKTIVSFANVS 184
                   + F++NHA+  +         F        + S LP     L+ +V    V 
Sbjct: 109 MPIFRERELSFMLNHADSKVFVVPSVFRGFDHAAMARELQSKLP----ALRQVV----VI 160

Query: 185 SSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQA 244
                ++ +  +     ++      +    P     +++ ++YTSGTTGEPKGV+ T   
Sbjct: 161 DGDGDDSFDRVLMTPERDDTPDAAAI-LAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANT 219

Query: 245 IVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAH 277
           + + +    +   +        D      P+AH
Sbjct: 220 LFSNIHPYAERLEL-----GGGDVILMASPMAH 247

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538

>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 45/179 (25%), Positives = 62/179 (34%), Gaps = 29/179 (16%)

Query: 347 FAYNYKLGNMKKG-----MPQNKAAPLLDSLVFSKIREAFGG-----RLQAMLSGAAPLP 396
           F ++  LG +  G      P   AA    +L   ++   FG      R+       A  P
Sbjct: 235 FGFSTLLGALAGGAPLVCEPVFDAARTARALRRHRVTHTFGNDEMLRRILDTAGERADFP 294

Query: 397 IHVEEF--------------LRVTSGAPLTQGYGLTE--SCSGCFTSLADVFNMIGTVGV 440
                F              L    G PLT  YG +E  +      +   V   I   G 
Sbjct: 295 -SARLFGFASFAPALGELAALARARGVPLTGLYGSSEVQALVALQPATDPVSVRIEGGGR 353

Query: 441 PMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV-DGWFHTG 498
           P +  EAR+ +        L     GEI +R  +L  GY   PD T   +  DG+F TG
Sbjct: 354 PASP-EARVRARDPQDGALLPDGESGEIEIRAPSLMRGYLDNPDATARALTDDGYFRTG 411

Length = 540

>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 46/206 (22%), Positives = 77/206 (37%), Gaps = 32/206 (15%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           LTY E+        + + +RGV P  R  +   N  + +IA+ A +        +   L 
Sbjct: 29  LTYSELRARVEGVAARLHARGVRPQQRVAVVAPNSVDAVIALLALHRLGAVPALMNPRLK 88

Query: 138 ANAVEFIINHAEVSIAFVQENK--IPSILSCLPRCC-LYLKTIVSFANVSSSQKKEAEEL 194
              +  +I   E++ A +  +   + +I         L L  +V               L
Sbjct: 89  PAEIAELIKRGEMTAAVIAVDAQVMDAIFQSGSGVRVLALGDLV--------------GL 134

Query: 195 GVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQ 254
           G    +            E PP++    + + YTSGTTG PKG V+  +A  + VL    
Sbjct: 135 GEPESAGPPI--------EDPPREPEQPAFVFYTSGTTGLPKGAVIPQRAAESRVL---- 182

Query: 255 MFVVT--GKVCSEEDTYFSFLPLAHI 278
            F+ T  G      +     +PL H+
Sbjct: 183 -FMSTQAGLRHGRHNVVLGLMPLYHV 207

CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495

>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional

 Score = 43.4 bits (103), Expect = 2e-04
 Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 7/65 (10%)

Query: 214 LPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKV-CSEEDTYFSF 272
              +   + + I++TSG+ G PKGVVL+++ ++A          V  ++  S ED  F+ 
Sbjct: 787 FCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLA------NRAQVAARIDFSPEDKVFNA 840

Query: 273 LPLAH 277
           LP+ H
Sbjct: 841 LPVFH 845

Length = 1140

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 43.6 bits (103), Expect = 3e-04
 Identities = 52/206 (25%), Positives = 87/206 (42%), Gaps = 32/206 (15%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           L+Y+++   A    +A+++R    GDR  +   + P+++ A   C    +  VP Y    
Sbjct: 41  LSYRDLDLRARTIAAALQARAS-FGDRAVLLFPSGPDYVAAFFGCLYAGVIAVPAYP--- 96

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
                      E +    QE  +  I    PR  L   T+    +       + EEL  +
Sbjct: 97  ----------PESARRHHQERLLSIIADAEPRLLL---TVADLRD----SLLQMEELAAA 139

Query: 198 CFSWEEFLQLGTLDCEL------PPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLS 251
             +  E L + TLD  L      P  +  +I+ + YTSG+T  PKGV +++  +VA    
Sbjct: 140 --NAPELLCVDTLDPALAEAWQEPALQPDDIAFLQYTSGSTALPKGVQVSHGNLVANEQL 197

Query: 252 VDQMFVVTGKVCSEEDTYFSFLPLAH 277
           +   F   G   + +D   S+LPL H
Sbjct: 198 IRHGF---GIDLNPDDVIVSWLPLYH 220

Length = 4334

>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional

 Score = 42.6 bits (101), Expect = 4e-04
 Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 19/92 (20%)

Query: 413  QGYGLTESCSG--CFTSLADVFNMIGTVGVPMTTVEARLESVP--EMGYDALSSVPRGEI 468
            +GYG+TE+       T +    N  GTVG  +  +E RLE VP  + G         G +
Sbjct: 937  EGYGVTETAPVIALNTPM---HNKAGTVGRLLPGIEYRLEPVPGIDEG---------GRL 984

Query: 469  CLRGNTLFSGYYK--RPDLTEEVIVDGWFHTG 498
             +RG  +  GY +   P + E    DGW+ TG
Sbjct: 985  FVRGPNVMLGYLRAENPGVLEP-PADGWYDTG 1015

Length = 1140

>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes

 Score = 42.6 bits (101), Expect = 4e-04
 Identities = 16/46 (34%), Positives = 24/46 (52%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACN 123
           L+Y E    A R+  A+R+ GV  GD   +   N PE+++A  A  
Sbjct: 4   LSYAEFNAWANRYAHALRALGVKKGDVVALLMENRPEYLLAWLALA 49

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444

>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional

 Score = 42.4 bits (100), Expect = 4e-04
 Identities = 33/180 (18%), Positives = 59/180 (32%), Gaps = 49/180 (27%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           +TY+E+ + + R     RS G+  GD   I+  N   ++    A     + Y  +   L 
Sbjct: 25  VTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTCVNSHLT 84

Query: 138 ANAVEFIIN----------HAEVSIAFVQENKIPSILSCLPRCCLYLKT-----IVSFAN 182
                +I++           A++ +A     + P +   L    +          V +A 
Sbjct: 85  PAEAAYIVDDSGARALITSAAKLDVARALLKQCPGVRHRL----VLDGDGELEGFVGYAE 140

Query: 183 VSSSQKK---EAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVV 239
             +         E LG                             ++Y+SGTTG PKG+ 
Sbjct: 141 AVAGLPATPIADESLGTD---------------------------MLYSSGTTGRPKGIK 173

Length = 511

>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated

 Score = 42.6 bits (101), Expect = 4e-04
 Identities = 67/294 (22%), Positives = 108/294 (36%), Gaps = 56/294 (19%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           LTY E+ + +      + + GV  GD   +   N   +++A+ A   +    + L +T G
Sbjct: 75  LTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAAG-KVGARIILLNT-G 132

Query: 138 ANAVEFIINHAEVSI-----AFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAE 192
            +  +     AEV+      A V +++   +LS LP     L+                +
Sbjct: 133 FSGPQL----AEVAAREGVKALVYDDEFTDLLSALPPDLGRLRAWGG----------NPD 178

Query: 193 ELGVSCFSWEEFLQL-GTLDCELPPKKKTNISTIMYTSGTTGEPKGVV---LTNQAIVAE 248
           +   S  + E    L         PK       ++ TSGTTG PKG      +  A +A 
Sbjct: 179 DDEPSGSTDETLDDLIAGSSTAPLPKPPKPGGIVILTSGTTGTPKGAPRPEPSPLAPLAG 238

Query: 249 VLS-----VDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG-DVR 302
           +LS       +  ++   +       F     AH+   +        G ++   R  D  
Sbjct: 239 LLSRVPFRAGETTLLPAPM-------FHATGWAHL--TLAMAL----GSTVVLRRRFDPE 285

Query: 303 YLMEDIQELKPTMFSGVPRVYDRI----------YTGISNKI--SSGGALSKKL 344
             +EDI + K T    VP +  RI          Y   S KI   SG ALS +L
Sbjct: 286 ATLEDIAKHKATALVVVPVMLSRILDLGPEVLAKYDTSSLKIIFVSGSALSPEL 339

Length = 549

>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 42.4 bits (100), Expect = 5e-04
 Identities = 35/163 (21%), Positives = 66/163 (40%), Gaps = 6/163 (3%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
            ++ E+   A R    + + GV PGD   +   N   +  A  A        VP+     
Sbjct: 12  RSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFK 71

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
              + +I+  +   +     + +  + S LP     L ++ +   ++++ +     L   
Sbjct: 72  PEEIAYILEDSGARVLIAHADLLHGLASALPAGVTVL-SVPTPPEIAAAYRISPALLTPP 130

Query: 198 CFS--WEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGV 238
             +  WE +L       + PP  +    +++YTSGTTG PKGV
Sbjct: 131 AGAIDWEGWLAQQEP-YDGPPVPQP--QSMIYTSGTTGHPKGV 170

Length = 509

>gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated

 Score = 42.2 bits (100), Expect = 5e-04
 Identities = 44/244 (18%), Positives = 79/244 (32%), Gaps = 54/244 (22%)

Query: 51  DSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGS 110
           ++A R P+   L    + + +      ++Y E+   A R+     +RGV  GD   +   
Sbjct: 45  EAAARHPDRPAL----LFEDQS-----ISYAELNARANRYAHWAAARGVGKGDVVALLME 95

Query: 111 NCPEWIIAMEACNSQAITYVPLYDTLGANAVEFI------------INHAEVSIAFVQEN 158
           N PE++ A                 LGA  V  +            +N  +     V E 
Sbjct: 96  NRPEYLAAWLGLAK-----------LGA-VVALLNTQQRGAVLAHSLNLVDAKHLIVGEE 143

Query: 159 KIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKK 218
                   +       +   +             +       +E+            P  
Sbjct: 144 -------LVEAF----EEARADLARPPRLWVAGGDTLDDPEGYEDLAAAAAGAPTTNPAS 192

Query: 219 KTNIS---TIMY--TSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFL 273
           ++ ++   T  Y  TSGTTG PK  V+++       L     F    ++ + +D  +  L
Sbjct: 193 RSGVTAKDTAFYIYTSGTTGLPKAAVMSH----MRWLKAMGGFGGLLRL-TPDDVLYCCL 247

Query: 274 PLAH 277
           PL H
Sbjct: 248 PLYH 251

Length = 600

>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)

 Score = 41.8 bits (99), Expect = 7e-04
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 7/40 (17%)

Query: 466 GEICLRGNTLFSGYYKRPDLTEEVI-------VDGWFHTG 498
           GEI +RG ++ +GY+ RP+ T E           GW  TG
Sbjct: 383 GEIWVRGPSVAAGYWNRPEATAETFGARLATDEGGWLRTG 422

FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547

>gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 41.6 bits (98), Expect = 7e-04
 Identities = 33/117 (28%), Positives = 45/117 (38%), Gaps = 33/117 (28%)

Query: 384 RLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMT 443
            L A+L G  P P  V +     +G  + + YG++E+  GC      V++     GVP+ 
Sbjct: 152 ELDAVLVGGGPAPAPVLD-AAAAAGINVVRTYGMSETSGGC------VYD-----GVPLD 199

Query: 444 TVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYY---KRPDLTEEVIVDGWFHT 497
            V  R+E               G I L G TL  GY          E     GWF T
Sbjct: 200 GVRVRVED--------------GRIALGGPTLAKGYRNPVDPDPFAEP----GWFRT 238

Length = 358

>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA)

 Score = 41.4 bits (98), Expect = 9e-04
 Identities = 10/23 (43%), Positives = 19/23 (82%)

Query: 225 IMYTSGTTGEPKGVVLTNQAIVA 247
           I++TSG+TG+PKGV +++  + +
Sbjct: 102 ILFTSGSTGKPKGVQISHANLAS 124

DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447

>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase

 Score = 41.1 bits (97), Expect = 0.001
 Identities = 13/17 (76%), Positives = 15/17 (88%)

Query: 225 IMYTSGTTGEPKGVVLT 241
           I+YTSGTTG+PKG V T
Sbjct: 105 IIYTSGTTGKPKGTVHT 121

This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 41.3 bits (97), Expect = 0.001
 Identities = 48/186 (25%), Positives = 76/186 (40%), Gaps = 45/186 (24%)

Query: 76   VW----LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVP 131
            VW    L Y E++  A R    +R +GV P     I     P+ ++ + A       YVP
Sbjct: 1151 VWDGGSLDYAELHAQANRLAHYLRDKGVGPDVCVAIAAERSPQLLVGLLAILKAGGAYVP 1210

Query: 132  LYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEA 191
            L     A  + +++  + V +   Q      +L  LP+                     A
Sbjct: 1211 LDPDYPAERLAYMLADSGVELLLTQS----HLLERLPQ---------------------A 1245

Query: 192  EELGVSCFSWEEFLQLGTLDCELPPKKKT-------NISTIMYTSGTTGEPKGVVLTNQA 244
            E  GVS       + L +L  +  P +         N++ ++YTSG+TG+PKGV  T+ A
Sbjct: 1246 E--GVSA------IALDSLHLDSWPSQAPGLHLHGDNLAYVIYTSGSTGQPKGVGNTHAA 1297

Query: 245  IVAEVL 250
            + AE L
Sbjct: 1298 L-AERL 1302

Length = 4334

>gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae

 Score = 41.1 bits (97), Expect = 0.001
 Identities = 25/112 (22%), Positives = 42/112 (37%), Gaps = 13/112 (11%)

Query: 47  QFFCDSAKRIPNNQML--GGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDR 104
           +     A+R P+   +  G              LTY E+   A R  + +R+ GV P  R
Sbjct: 3   ELVEAQAERTPDAIAVVCGDES-----------LTYAELNRRANRLAARLRAAGVGPESR 51

Query: 105 CGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQ 156
            G+     P+ ++A+ A       YVPL        + +I+  A   +    
Sbjct: 52  VGVCLRRSPDLVVALLAVLKAGAAYVPLDPAYPPERLAYILEDAGARLVLTD 103

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449

>gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated

 Score = 40.8 bits (95), Expect = 0.001
 Identities = 49/209 (23%), Positives = 83/209 (39%), Gaps = 32/209 (15%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           L Y+E+        + +R++ V+ G R  +   N PE  +++ AC       V     L 
Sbjct: 42  LRYRELVAEVGGLAADLRAQSVSRGSRVLVISDNGPETYLSVLACAKLGAIAVMADGNLP 101

Query: 138 ANAVEF---IINHAEVSIA---FVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEA 191
             A+E    I + A   +A    +  + +P  L  +P   + +  +   +  S      A
Sbjct: 102 IAAIERFCQITDPAAALVAPGSKMASSAVPEALHSIPVIAVDIAAVTRESEHSLDAASLA 161

Query: 192 EELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVA--EV 249
                           G+ D             +++TSGTTGEPK V+L N+   A  ++
Sbjct: 162 GNAD-----------QGSEDP----------LAMIFTSGTTGEPKAVLLANRTFFAVPDI 200

Query: 250 LSVDQMFVVTGKVCSEEDTYFSFLPLAHI 278
           L  + +  VT  V    +T +S LP  HI
Sbjct: 201 LQKEGLNWVTWVV---GETTYSPLPATHI 226

Length = 540

>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed

 Score = 40.0 bits (94), Expect = 0.002
 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 5/57 (8%)

Query: 221 NISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAH 277
           +++ ++YTSGTTGEPKGV+ T   ++A ++   +   +       +D      P+AH
Sbjct: 198 DVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERLGLGA-----DDVILMASPMAH 249

Length = 547

>gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated

 Score = 40.8 bits (95), Expect = 0.002
 Identities = 30/101 (29%), Positives = 44/101 (43%), Gaps = 11/101 (10%)

Query: 407 SGAPLTQGYGLTES-CSG-CFTSLADVFNMI--GTVGVPMTTVEARLESVPEMG-----Y 457
           +G    Q YGL+E+ C+  C  +       I  G VG P   V+  L      G      
Sbjct: 309 TGVRTAQVYGLSETGCTALCLPTDDGSIVKIEAGAVGRPYPGVDVYLA--ATDGIGPTAP 366

Query: 458 DALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTG 498
            A  S   G + ++      GY+  P+ T EV++DGW +TG
Sbjct: 367 GAGPSASFGTLWIKSPANMLGYWNNPERTAEVLIDGWVNTG 407

Length = 540

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 40.1 bits (94), Expect = 0.003
 Identities = 63/292 (21%), Positives = 99/292 (33%), Gaps = 73/292 (25%)

Query: 221  NISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFS--------F 272
            N++ ++YTSG+TG PKG    + A+V  + +  + + ++      + T F+        F
Sbjct: 1719 NLAYVIYTSGSTGRPKGAGNRHGALVNRLCATQEAYQLSAADVVLQFTSFAFDVSVWELF 1778

Query: 273  LPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISN 332
             PL +    +I     H+         D   L++ I+  + T    VP +          
Sbjct: 1779 WPLINGARLVIAPPGAHR---------DPEQLIQLIERQQVTTLHFVPSML--------- 1820

Query: 333  KISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGA 392
                     ++L +               Q +    L  +V                 G 
Sbjct: 1821 ---------QQLLQMD------------EQVEHPLSLRRVVCG---------------GE 1844

Query: 393  APLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESV 452
            A     +  +L       L   YG TE+            ++ G   VP+    A L   
Sbjct: 1845 ALEVEALRPWLERLPDTGLFNLYGPTETAVDVTHWTCRRKDLEGRDSVPIGQPIANLS-- 1902

Query: 453  PEMGY--DA-LSSVPR---GEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTG 498
                Y  DA L+ VP    GE+ L G  L  GY  RP LT E  V   F T 
Sbjct: 1903 ---TYILDASLNPVPIGVAGELYLGGVGLARGYLNRPALTAERFVADPFGTV 1951

Length = 3956

>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme)

 Score = 39.8 bits (94), Expect = 0.003
 Identities = 12/15 (80%), Positives = 15/15 (100%)

Query: 225 IMYTSGTTGEPKGVV 239
           I+YTSG+TG+PKGVV
Sbjct: 230 ILYTSGSTGKPKGVV 244

Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602

>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated

 Score = 39.7 bits (93), Expect = 0.003
 Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 1/34 (2%)

Query: 466 GEIC-LRGNTLFSGYYKRPDLTEEVIVDGWFHTG 498
           GE+    G   F GYY  P+   E +  G + +G
Sbjct: 353 GELVNTAGPGGFEGYYNDPEADAERMRGGVYWSG 386

Length = 529

>gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed

 Score = 39.5 bits (93), Expect = 0.004
 Identities = 33/194 (17%), Positives = 66/194 (34%), Gaps = 29/194 (14%)

Query: 73  GPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPL 132
           G +  LTY E  +       A+  RG++      I   N  E  +   A     + Y P+
Sbjct: 65  GGWRRLTYAEALERVRAIAQALLDRGLSAERPLMILSGNSIEHALLALAAMYAGVPYAPV 124

Query: 133 ---YDTLGAN--AVEFIINHAEVSIAFVQENKI--PSILSCLPRCCLYLKTIVSFANVSS 185
              Y  +  +   +  ++      + F  +      ++ + +P     ++ +        
Sbjct: 125 SPAYSLVSQDFGKLRHVLELLTPGLVFADDGAAFARALAAVVPAD---VEVVAV------ 175

Query: 186 SQKKEAEELGVSCFSWEEFLQ---LGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLT- 241
                    G +   +   L       +D          I+  ++TSG+TG PK V+ T 
Sbjct: 176 ----RGAVPGRAATPFAALLATPPTAAVDAAHAAVGPDTIAKFLFTSGSTGLPKAVINTH 231

Query: 242 -----NQAIVAEVL 250
                NQ ++A+  
Sbjct: 232 RMLCANQQMLAQTF 245

Length = 614

>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated

 Score = 39.3 bits (92), Expect = 0.004
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 17/58 (29%)

Query: 227 YTSGTTGEPKGVVLTNQAIVAEVLSVDQM-FVVTGKVC------SEEDTYFSFLPLAH 277
           +TSGTTG PK  VLT+           QM FV+T  +       +E+D      PL+H
Sbjct: 170 FTSGTTGRPKAAVLTH----------GQMAFVITNHLADLMPGTTEQDASLVVAPLSH 217

Length = 528

>gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional

 Score = 39.5 bits (93), Expect = 0.004
 Identities = 32/121 (26%), Positives = 49/121 (40%), Gaps = 17/121 (14%)

Query: 385 LQAMLSGAAPLPIHVEEFLR--VTSGAPLTQGYGLTESCSGCFTSLADVF--------NM 434
           L+ ++S  AP+PI V E  R  +   A +   YG TE+         ++         N 
Sbjct: 290 LRRVISAGAPVPIAVIERFRAMLPPDAEILTPYGATEALPISSIESREILFATRAATDNG 349

Query: 435 IGT-VGVPMTTVEARLESVPEMGYDALSSVPR------GEICLRGNTLFSGYYKRPDLTE 487
            G  VG P+  VE R+ ++ +          R      GEI + G  +   YY RP+ T 
Sbjct: 350 AGICVGRPVDGVEVRIIAISDAPIPEWDDALRLATGEIGEIVVAGPMVTRSYYNRPEATR 409

Query: 488 E 488
            
Sbjct: 410 L 410

Length = 552

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	510
KOG1256	691	consensus Long-chain acyl-CoA synthetases (AMP-for	100.0
PLN02861	660	long-chain-fatty-acid-CoA ligase	100.0
PLN02614	666	long-chain acyl-CoA synthetase	100.0
PLN02430	660	long-chain-fatty-acid-CoA ligase	100.0
COG1022	613	FAA1 Long-chain acyl-CoA synthetases (AMP-forming)	100.0
PTZ00342	746	acyl-CoA synthetase; Provisional	100.0
PLN02736	651	long-chain acyl-CoA synthetase	100.0
KOG1180	678	consensus Acyl-CoA synthetase [Lipid transport and	100.0
PLN02387	696	long-chain-fatty-acid-CoA ligase family protein	100.0
PTZ00216	700	acyl-CoA synthetase; Provisional	100.0
KOG1177	596	consensus Long chain fatty acid acyl-CoA ligase [L	100.0
KOG1176	537	consensus Acyl-CoA synthetase [Lipid transport and	100.0
COG0318	534	CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l	100.0
COG0365	528	Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l	100.0
PTZ00237	647	acetyl-CoA synthetase; Provisional	100.0
PLN02654	666	acetate-CoA ligase	100.0
PRK08180	614	feruloyl-CoA synthase; Reviewed	100.0
PRK06334	539	long chain fatty acid--[acyl-carrier-protein] liga	100.0
PLN02860	563	o-succinylbenzoate-CoA ligase	100.0
PRK07529	632	AMP-binding domain protein; Validated	100.0
TIGR02188	625	Ac_CoA_lig_AcsA acetate--CoA ligase. This model de	100.0
PF00501	417	AMP-binding: AMP-binding enzyme; InterPro: IPR0008	100.0
PRK07788	549	acyl-CoA synthetase; Validated	100.0
PRK12582	624	acyl-CoA synthetase; Provisional	100.0
PRK04319	570	acetyl-CoA synthetase; Provisional	100.0
COG1021	542	EntE Peptide arylation enzymes [Secondary metaboli	100.0
PRK13295	547	cyclohexanecarboxylate-CoA ligase; Reviewed	100.0
PRK00174	637	acetyl-CoA synthetase; Provisional	100.0
TIGR02316	628	propion_prpE propionate--CoA ligase. This family c	100.0
PLN02574	560	4-coumarate--CoA ligase-like	100.0
PRK08314	546	long-chain-fatty-acid--CoA ligase; Validated	100.0
PLN02246	537	4-coumarate--CoA ligase	100.0
PRK07656	513	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK13382	537	acyl-CoA synthetase; Provisional	100.0
PRK03640	483	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PRK05677	562	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK05857	540	acyl-CoA synthetase; Validated	100.0
TIGR02275	527	DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot	100.0
PRK06187	521	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK09274	552	peptide synthase; Provisional	100.0
PRK10524	629	prpE propionyl-CoA synthetase; Provisional	100.0
PRK07638	487	acyl-CoA synthetase; Validated	100.0
TIGR03208	538	cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase.	100.0
PRK06839	496	acyl-CoA synthetase; Validated	100.0
PRK08008	517	caiC putative crotonobetaine/carnitine-CoA ligase;	100.0
PLN02330	546	4-coumarate--CoA ligase-like 1	100.0
PRK05605	573	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK08316	523	acyl-CoA synthetase; Validated	100.0
PRK07769	631	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK06155	542	crotonobetaine/carnitine-CoA ligase; Provisional	100.0
PRK05620	576	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK05852	534	acyl-CoA synthetase; Validated	100.0
PRK07786	542	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK06087	547	short chain acyl-CoA synthetase; Reviewed	100.0
PRK12492	562	long-chain-fatty-acid--CoA ligase; Provisional	100.0
PRK07008	539	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07470	528	acyl-CoA synthetase; Validated	100.0
PRK06060	705	acyl-CoA synthetase; Validated	100.0
PRK07059	557	Long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK08315	559	AMP-binding domain protein; Validated	100.0
PLN03102	579	acyl-activating enzyme; Provisional	100.0
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	100.0
PRK07514	504	malonyl-CoA synthase; Validated	100.0
PRK08043	718	bifunctional acyl-[acyl carrier protein] synthetas	100.0
PRK06188	524	acyl-CoA synthetase; Validated	100.0
PRK06145	497	acyl-CoA synthetase; Validated	100.0
TIGR03098	515	ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor	100.0
PRK10946	536	entE enterobactin synthase subunit E; Provisional	100.0
PRK12476	612	putative fatty-acid--CoA ligase; Provisional	100.0
PLN03052	728	acetate--CoA ligase; Provisional	100.0
PRK03584	655	acetoacetyl-CoA synthetase; Provisional	100.0
PRK12583	558	acyl-CoA synthetase; Provisional	100.0
TIGR03205	541	pimA dicarboxylate--CoA ligase PimA. PimA, a membe	100.0
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	100.0
TIGR02262	508	benz_CoA_lig benzoate-CoA ligase family. Character	100.0
PRK06164	540	acyl-CoA synthetase; Validated	100.0
PRK06178	567	acyl-CoA synthetase; Validated	100.0
TIGR01217	652	ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym	100.0
PRK06710	563	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
PRK10252	1296	entF enterobactin synthase subunit F; Provisional	100.0
PRK08751	560	putative long-chain fatty acyl CoA ligase; Provisi	100.0
PRK06018	542	putative acyl-CoA synthetase; Provisional	100.0
PRK09088	488	acyl-CoA synthetase; Validated	100.0
PLN02479	567	acetate-CoA ligase	100.0
PRK13388	540	acyl-CoA synthetase; Provisional	100.0
PRK13383	516	acyl-CoA synthetase; Provisional	100.0
PRK05851	525	long-chain-fatty-acid--[acyl-carrier-protein] liga	100.0
PRK08974	560	long-chain-fatty-acid--CoA ligase; Validated	100.0
TIGR01734	502	D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
PRK07867	529	acyl-CoA synthetase; Validated	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PRK13390	501	acyl-CoA synthetase; Provisional	100.0
PRK07787	471	acyl-CoA synthetase; Validated	100.0
PRK05691	4334	peptide synthase; Validated	100.0
PRK09192	579	acyl-CoA synthetase; Validated	100.0
PRK08279	600	long-chain-acyl-CoA synthetase; Validated	100.0
PRK08162	545	acyl-CoA synthetase; Validated	100.0
PRK04813	503	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
PRK13391	511	acyl-CoA synthetase; Provisional	100.0
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	100.0
PRK05850	578	acyl-CoA synthetase; Validated	100.0
PRK05691	4334	peptide synthase; Validated	100.0
PTZ00297	1452	pantothenate kinase; Provisional	100.0
PRK07798	533	acyl-CoA synthetase; Validated	100.0
PRK08276	502	long-chain-fatty-acid--CoA ligase; Validated	100.0
TIGR01733	408	AA-adenyl-dom amino acid adenylation domain. This	100.0
PRK12406	509	long-chain-fatty-acid--CoA ligase; Provisional	100.0
PRK07768	545	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK09029	458	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PRK07445	452	O-succinylbenzoic acid--CoA ligase; Reviewed	100.0
TIGR01923	436	menE O-succinylbenzoate-CoA ligase. This model rep	100.0
PLN03051	499	acyl-activating enzyme; Provisional	100.0
PRK07868	994	acyl-CoA synthetase; Validated	100.0
KOG1175	626	consensus Acyl-CoA synthetase [Lipid transport and	100.0
KOG1179	649	consensus Very long-chain acyl-CoA synthetase/fatt	100.0
PRK08308	414	acyl-CoA synthetase; Validated	100.0
COG1020	642	EntF Non-ribosomal peptide synthetase modules and	100.0
PRK07824	358	O-succinylbenzoic acid--CoA ligase; Provisional	99.96
TIGR03089	227	conserved hypothetical protein TIGR03089. This pro	99.95
KOG3628	1363	consensus Predicted AMP-binding protein [General f	99.94
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	99.91
TIGR02372	386	4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv	99.89
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	99.82
KOG3628	1363	consensus Predicted AMP-binding protein [General f	99.69
KOG1178	1032	consensus Non-ribosomal peptide synthetase/alpha-a	99.67
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	99.64
TIGR02304	430	aden_form_hyp probable adenylate-forming enzyme. M	99.2
PF04443	365	LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR	98.41
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	94.42
PRK09188	365	serine/threonine protein kinase; Provisional	93.86
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	87.27
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	87.1

>KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism]

Probab=100.00  E-value=3.1e-72  Score=560.25  Aligned_cols=483  Identities=42%  Similarity=0.730  Sum_probs=429.6

Q ss_pred             CCccccccc--cCCCCCCCCCCCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCC
Q 010455           23 GPVYRCIYA--KDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVN  100 (510)
Q Consensus        23 ~~~~~~~~~--~~~~~~~~~~~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~  100 (510)
                      ++.+|+..-  +.+++....+..|+++.|++.+..+|+.+++-.+...+ ..+.++++||+|..+++..++..|+++|++
T Consensus        53 ~~~~~s~~~~~~~~~~~~~~~~~T~~~~f~~~~~~~~~~p~LG~r~~~~-~~~~~~~~tY~q~~e~~~~~~~~l~~lG~~  131 (691)
T KOG1256|consen   53 DGSRRSAVLPREELFSCPFDGPLTLYEGFRRSVEKSGNGPMLGTRVIVD-GKGPYEWLTYKQVYERAENLGSGLRKLGVK  131 (691)
T ss_pred             CCceeeeeccCCCCCCCCCCCcccHHHHhhcchhccCCCCceeEEeccc-CCCCcEEEEHHHHHHHHHHHHHHHHHhCCC
Confidence            467777776  45666667889999999999999999999998872222 456789999999999999999999999999


Q ss_pred             CCCEEEEEcCCchhHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEc-CCChhhHhhcCcc-CCCCccEEE
Q 010455          101 PGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQ-ENKIPSILSCLPR-CCLYLKTIV  178 (510)
Q Consensus       101 ~gd~Vai~~~ns~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~-~~~~~~~~~~~~~-~~~~~~~v~  178 (510)
                      +++.|+|+.-|++||+++.+||...|.++|||...++++.+.++++++.+.++|+| ++....+.+.... ..+.++.++
T Consensus       132 ~~~~VGIy~~N~pEWiis~~a~~~~~~v~VplYdTlg~ea~~~Ii~~~e~~iv~vd~~~k~~~ll~~~~~~~~~~LK~iI  211 (691)
T KOG1256|consen  132 EDSKVGIYAFNRPEWIISEMACYAYSLVNVPLYDTLGAEAVHYIINHAEISIVFVDNAKKAEKLLEIKENDSLPSLKAII  211 (691)
T ss_pred             CCceEEEeccCChhhHHhHHHHHhcCCEEeecccCCCHHHHHHHHHhcceeEEEEeCHHHHHHHHhhcccccCccceeEE
Confidence            99999999999999999999999999999999999999999999999999999999 4566666666655 368899999


Q ss_pred             EecCCChhhhhHhhhcCceeeeHHHHHHcC-CCCCCC-CCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhh
Q 010455          179 SFANVSSSQKKEAEELGVSCFSWEEFLQLG-TLDCEL-PPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMF  256 (510)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~  256 (510)
                      .++.........+...+...++|+++...+ ...... .+..++|+|.|.|||||||.||||++||+|+++.+.......
T Consensus       212 ~~~~~~~~~~~~~~~~gv~v~S~~e~~~lG~~~~~~~~~~p~p~d~atI~yTSGTTG~PKGVMLTH~Niv~~v~~~~~~~  291 (691)
T KOG1256|consen  212 QLDEPSDELKEKAENNGVEVYSWDEFEELGKKNQRKPRVPPKPDDLATICYTSGTTGNPKGVMLTHRNIVSDVAGIFFLS  291 (691)
T ss_pred             EecCCchhhhhhhhcCCeEEEEHHHHHhhcccccCCCCCCCCccceEEEEEcCCCCCCCceEEEeccceeehhhhhhhhh
Confidence            999999999999998999999999999888 333333 477899999999999999999999999999999766432222


Q ss_pred             hhcc-ccCCCCcEEEEecChHHHHHHHHHHHHHhcCcEEEEeCCCHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhh
Q 010455          257 VVTG-KVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKIS  335 (510)
Q Consensus       257 ~~~~-~~~~~~d~~~~~~pl~h~~g~~~~l~~l~~G~~~v~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~  335 (510)
                      .... .....+|++++++||.|++....-...++.|+.+.+.++|+..+.+.+++.+||++.++|.+|+++.+.+++.+.
T Consensus       292 ~~~~~~~~~~~dv~lSyLPLAHi~er~~~~~~~~~G~~IgF~~gD~~~l~~dlk~lkPT~f~~VPRVl~riye~I~~~~~  371 (691)
T KOG1256|consen  292 AAENAKATVGDDVYLSYLPLAHIFERVVELYTFYIGAKIGFARGDILKLTDDLKELKPTVFPGVPRVLERIYEGIQKQVQ  371 (691)
T ss_pred             hcccccccccCceEEEeCcHHHHHHHHHHHhHhhcccEEEEecCChHHHHHHHHHhCCcEEeccHhHHHHHHHHHHHHHh
Confidence            1111 233447999999999999999987777899999999999999999999999999999999999999999999999


Q ss_pred             ccChhHHHHHHHHHHhhh-hhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeee
Q 010455          336 SGGALSKKLFEFAYNYKL-GNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQG  414 (510)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~  414 (510)
                      +.+.++++++++|...+. -.+.+|.... ..+.+|++.++++++.+|+.+|.+++|++|+++++..+++..+|+.|+++
T Consensus       372 ~sgflkr~l~~~A~~~k~~~~~~~G~~~~-~~~~~D~lVf~KI~~~LGg~vr~~~sGaAPls~ev~~F~r~~~g~~v~eG  450 (691)
T KOG1256|consen  372 KSGFLKRKLFNFAMAYKLEHRLMKGKSRS-RDRFADKLVFHKIKQSLGGNVRLIISGAAPLSPEVLTFFRAALGCRVLEG  450 (691)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhhCCCCcc-cchHHHHHHHHHHHHHhcCceeEEEecCCCCCHHHHHHHHHhcCceeeec
Confidence            999999999999999999 5677877664 68999999999999999999999999999999999999999999999999


Q ss_pred             ccccccccceecccCCCCccCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhh-ccC
Q 010455          415 YGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDG  493 (510)
Q Consensus       415 yG~tE~~~~~~~~~~~~~~~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~g  493 (510)
                      ||+||+++.++...++.. ..+++|.|+|+++++++|+++.+....+  ..|||||||++||.||+++|+.|++++ .||
T Consensus       451 YGlTEts~g~~~~~~~d~-~lgsvG~p~p~~~vKL~dvpe~ny~a~~--~~GEIcirG~~Vf~GYyK~p~~T~e~ideDG  527 (691)
T KOG1256|consen  451 YGLTETSAGTTLTLPGDN-VLGSVGPPVPGNEVKLVDVPEMNYDADG--SKGEICVRGPNVFMGYYKDPEKTAEAIDEDG  527 (691)
T ss_pred             ccccccCCceEeccCCCC-CCCCcCCcccCceEEEechHHhCcCcCC--CcceEEEecchhceeccCChHHHhhhhcccc
Confidence            999999977776666666 5599999999999999999998888777  479999999999999999999999999 999


Q ss_pred             ccccCCe-eeccCCccCC
Q 010455          494 WFHTGKN-PWQYTFKKLM  510 (510)
Q Consensus       494 w~~TGDl-~~d~dG~~~~  510 (510)
                      |++|||+ ++|++|.+.|
T Consensus       528 WLhTGDiG~~~p~G~l~I  545 (691)
T KOG1256|consen  528 WLHTGDIGEWDPNGTLKI  545 (691)
T ss_pred             ccccccceeECCCccEEE
Confidence            9999999 9999998653

>PLN02861 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=7.5e-70  Score=580.39  Aligned_cols=509  Identities=77%  Similarity=1.294  Sum_probs=413.5

Q ss_pred             CCcceeeeccCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeH
Q 010455            1 MSETYTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTY   80 (510)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty   80 (510)
                      |-+|++..+|+.++..+.+|.++++||+....+.+...+....++.++|++.++++|+++|+......++..+.++++||
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~p~~~al~~~~~~~~~~g~~~~~Ty   80 (660)
T PLN02861          1 MAETYTVKVEESRPATGGKPSAGPVYRSIYAKDGLLDLPADIDSPWQFFSDAVKKYPNNQMLGRRQVTDSKVGPYVWLTY   80 (660)
T ss_pred             CCccceeeeccCCCCCCCCCCCCCcccccccccccccCCCCCCCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCceEEEH
Confidence            77899999999999888899999999999887776655666789999999999999999999753111333345678999


Q ss_pred             HHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCCh
Q 010455           81 QEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI  160 (510)
Q Consensus        81 ~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~  160 (510)
                      +||.++++++|.+|.++|+++||+|+|+++|+++|++++|||+++|++++||++.++.+++.+++++++++++|++++..
T Consensus        81 ~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~v~~~~~~~  160 (660)
T PLN02861         81 KEVYDAAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKI  160 (660)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHcCCCCEEEECHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999987766


Q ss_pred             hhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCceeeeHHHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEe
Q 010455          161 PSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVL  240 (510)
Q Consensus       161 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~  240 (510)
                      ..+..........++.++.+++.................+++++..............++++++|+|||||||.||||++
T Consensus       161 ~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~yTSGTTG~PKGV~l  240 (660)
T PLN02861        161 SSILSCLPKCSSNLKTIVSFGDVSSEQKEEAEELGVSCFSWEEFSLMGSLDCELPPKQKTDICTIMYTSGTTGEPKGVIL  240 (660)
T ss_pred             HHHHHhhhhCCCCCEEEEEECCCChhhhhhhhcCCcEEEEHHHHHHhCcccCCCCccCCCceEEEEecCCCCCCCCEEEE
Confidence            55544333322346677777643321111111112334577777654422222234468999999999999999999999


Q ss_pred             ecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCcEEEEeCCCHhhHHHHHhhhcCcEEEecc
Q 010455          241 TNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVP  320 (510)
Q Consensus       241 sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~l~~l~~G~~~v~~~~~~~~~~~~i~~~~~t~~~~~P  320 (510)
                      ||+++++.+......+.........+|++++.+|++|+++....+.+++.|+++++.+.++..+++.+++++||+++++|
T Consensus       241 th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~i~~~~~T~~~~vP  320 (660)
T PLN02861        241 TNRAIIAEVLSTDHLLKVTDRVATEEDSYFSYLPLAHVYDQVIETYCISKGASIGFWQGDIRYLMEDVQALKPTIFCGVP  320 (660)
T ss_pred             ecHHHHHHHHHHHhccccccccCCCCCEEEEECcHHHHHHHHHHHHHHHhCCEEEEeCCCHHHHHHHHHHhCCcEEeech
Confidence            99999998877655441111124688999999999999998776678999999999877999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHH
Q 010455          321 RVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVE  400 (510)
Q Consensus       321 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~  400 (510)
                      ++|+.+.+.+...+...+...+.+++++...+...+..+.......+..+.++++++++.+|+++|.+++||+++++++.
T Consensus       321 ~~~~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lg~~lr~~~~Ggapl~~~~~  400 (660)
T PLN02861        321 RVYDRIYTGIMQKISSGGMLRKKLFDFAYNYKLGNLRKGLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVE  400 (660)
T ss_pred             HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhcCCCCcCccHhHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHH
Confidence            99999999998999999999999999999998887766544444466788899999999999999999999999999986


Q ss_pred             HHHHHhcCC-CeeeeccccccccceecccCCCCccCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccc
Q 010455          401 EFLRVTSGA-PLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGY  479 (510)
Q Consensus       401 ~~~~~~~g~-~l~~~yG~tE~~~~~~~~~~~~~~~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY  479 (510)
                      +++ ..++. .++++||+||+++.++..........+++|+|+|+++++|+|.++.+......++.|||+|+||+++.||
T Consensus       401 ~~~-~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~p~~ev~i~d~~~~g~~~~~~~~~GEi~vrGp~v~~GY  479 (660)
T PLN02861        401 EFL-RVTSCSVLSQGYGLTESCGGCFTSIANVFSMVGTVGVPMTTIEARLESVPEMGYDALSDVPRGEICLRGNTLFSGY  479 (660)
T ss_pred             HHH-HHHcCCCeeEecchhhhhhceeecccccCCCCCCccCccCceEEEEEEccccCcccCCCCCceeEEEcCCcccccc
Confidence            655 44564 7999999999987666544333333589999999999999984332212222346899999999999999


Q ss_pred             cCCchhhhhhhccCccccCCe-eeccCCccCC
Q 010455          480 YKRPDLTEEVIVDGWFHTGKN-PWQYTFKKLM  510 (510)
Q Consensus       480 ~~~~~~~~~~~~~gw~~TGDl-~~d~dG~~~~  510 (510)
                      |++|+.|.++|.||||+|||+ ++|+||.+.+
T Consensus       480 ~~~pe~T~~~f~dGw~~TGDlg~~d~dG~l~i  511 (660)
T PLN02861        480 HKRQDLTEEVLIDGWFHTGDIGEWQPNGAMKI  511 (660)
T ss_pred             cCCHHHHHhhhhccCcccCceEEECCCCcEEE
Confidence            999999999999999999999 9999998653

>PLN02614 long-chain acyl-CoA synthetase

Probab=100.00  E-value=2.1e-68  Score=568.91  Aligned_cols=508  Identities=55%  Similarity=0.994  Sum_probs=399.3

Q ss_pred             cceeeeccCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHH
Q 010455            3 ETYTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQE   82 (510)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~   82 (510)
                      +++-+.+...+-.+++.|.++++||+......++.......++.++|+++++++|+++|+.+....++..+.++.+||+|
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~e   84 (666)
T PLN02614          5 KKFIFQVEEGKEGSDGRPSVGPVYRSIFAKDGFPNPIEGMDSCWDVFRMSVEKYPNNPMLGRREIVDGKPGKYVWQTYQE   84 (666)
T ss_pred             ceeEEEecccccCCCCCCCCCCcccCcccccccCCCCCCCCcHHHHHHHHHHhCCCCCeEEEecccCCCCCCcEEeEHHH
Confidence            44555555555567788999999999987766654345567999999999999999999986411022223456799999


Q ss_pred             HHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhh
Q 010455           83 VYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPS  162 (510)
Q Consensus        83 l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~  162 (510)
                      |.++++++|.+|+++|+++||+|+|+++|+++|++++|||+++|++++|+++.++.+++.+++++++++++|++++....
T Consensus        85 l~~~v~~lA~~L~~~Gv~~Gd~Vai~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~  164 (666)
T PLN02614         85 VYDIVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEACNAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKKISE  164 (666)
T ss_pred             HHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHhccCCCEEEECHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998776555


Q ss_pred             HhhcCccCCCCccEEEEecCCChhhhhHhhhcCceeeeHHHHHHcCC-CCCCCCCCCCCCeEEEEecCCCCCCCceEEee
Q 010455          163 ILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGVVLT  241 (510)
Q Consensus       163 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s  241 (510)
                      +..........++.++.++..................+++++..... .........++++++|+|||||||.||||++|
T Consensus       165 ~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~I~yTSGTTG~PKGV~lt  244 (666)
T PLN02614        165 LFKTCPNSTEYMKTVVSFGGVSREQKEEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMIS  244 (666)
T ss_pred             HHHhcccccccceEEEEeCCCChHHhhhhhhcCcEEEEHHHHHhhcccCCCCCCCCCCCceEEEEEcCCCCCCCcEEEEe
Confidence            44333322233566676654321111111111223457777765432 11122234679999999999999999999999


Q ss_pred             cHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCcEEEEeCCCHhhHHHHHhhhcCcEEEeccH
Q 010455          242 NQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPR  321 (510)
Q Consensus       242 h~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~l~~l~~G~~~v~~~~~~~~~~~~i~~~~~t~~~~~P~  321 (510)
                      |+++++.+......+......+..+|++++++|++|+++....+.+++.|+++++.++++..+++.+++++||+++++|+
T Consensus       245 h~nl~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~i~~~~~T~~~~vP~  324 (666)
T PLN02614        245 NESIVTLIAGVIRLLKSANAALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGDVKLLIEDLGELKPTIFCAVPR  324 (666)
T ss_pred             cHHHHHHHHHHHhhccccccCCCCCcEEEEeccHHHHHHHHHHHHHHHhCCEEEEeCCCHHHHHHHHHHhCCeEEEecHH
Confidence            99999887765443311112467899999999999999987666678899999998889999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHH
Q 010455          322 VYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEE  401 (510)
Q Consensus       322 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~  401 (510)
                      +|+.+...+...+...+....++++++.+.+...+..+.......+..+.+.++++++.+|++||.+++||+++++++.+
T Consensus       325 ~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~Gga~l~~~~~~  404 (666)
T PLN02614        325 VLDRVYSGLQKKLSDGGFLKKFVFDSAFSYKFGNMKKGQSHVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHVES  404 (666)
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHH
Confidence            99999988888888888888889998888877666655444445667788889999999989999999999999988755


Q ss_pred             HHHHhcCCCeeeeccccccccceecccCCCCccCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccC
Q 010455          402 FLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYK  481 (510)
Q Consensus       402 ~~~~~~g~~l~~~yG~tE~~~~~~~~~~~~~~~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~  481 (510)
                      +++...++.++++||+||++.+++...+......+++|+|+||++++|+|.+++...+...++.|||+|+||++|.|||+
T Consensus       405 ~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~pg~evki~d~~~~~~~~~~~g~~GEl~vrGp~v~~GY~~  484 (666)
T PLN02614        405 FLRVVACCHVLQGYGLTESCAGTFVSLPDELDMLGTVGPPVPNVDIRLESVPEMEYDALASTPRGEICIRGKTLFSGYYK  484 (666)
T ss_pred             HHHHhcCCCEEeeCchHhhhhheeeeccccCCcCCcccCcCCceEEEEeeecccCcccCCCCCCceEEEcCCcccccccC
Confidence            55443358999999999998765554443333458999999999999998444322233345899999999999999999


Q ss_pred             CchhhhhhhccCccccCCe-eeccCCccCC
Q 010455          482 RPDLTEEVIVDGWFHTGKN-PWQYTFKKLM  510 (510)
Q Consensus       482 ~~~~~~~~~~~gw~~TGDl-~~d~dG~~~~  510 (510)
                      +|+.|.++|.||||+|||+ ++|+||++.+
T Consensus       485 ~pe~T~~~f~dGw~~TGDlg~~d~dG~l~i  514 (666)
T PLN02614        485 REDLTKEVLIDGWLHTGDVGEWQPNGSMKI  514 (666)
T ss_pred             CHHHhhhhhccCCcccceEEEEcCCCCEEE
Confidence            9999999999999999999 9999998753

>PLN02430 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=2.2e-65  Score=545.07  Aligned_cols=503  Identities=48%  Similarity=0.862  Sum_probs=401.5

Q ss_pred             eeccCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHH
Q 010455            7 VKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDA   86 (510)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~   86 (510)
                      .++......+.++|.++++||+....+.+...+...+|+.++|++.++++|+++|+.+....++..+.+.++||+|+.++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~   85 (660)
T PLN02430          6 AQVEEGVKGKDGKPSVGPVYRNLLSKKGFPPIDSDITTAWDIFSKSVEKYPDNKMLGWRRIVDGKVGPYMWKTYKEVYEE   85 (660)
T ss_pred             eeecccCCCCCCCCCCCCccccccccccccCCCCCCCCHHHHHHHHHHhCCCCceEEEEecCCCCCCCcEEEEHHHHHHH
Confidence            44433333335788999999998876666554567889999999999999999999764111233344567899999999


Q ss_pred             HHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhc
Q 010455           87 AIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSC  166 (510)
Q Consensus        87 v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~  166 (510)
                      ++++|.+|.+.|+++||+|+|+++|+++|++++|||+++|++++|+++.++++++.++++.++++++|+++.........
T Consensus        86 v~~lA~~L~~~Gv~~gd~V~i~~~n~~ew~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~  165 (660)
T PLN02430         86 VLQIGSALRASGAEPGSRVGIYGSNCPQWIVAMEACAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKIKELLEP  165 (660)
T ss_pred             HHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEeccCCCHHHHHHHHhccCCCEEEECHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999987643332222


Q ss_pred             CccCCCCccEEEEecCCChhhhhHhhhcCceeeeHHHHHHcCC-CCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHH
Q 010455          167 LPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAI  245 (510)
Q Consensus       167 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l  245 (510)
                      .......++.++.+++.................+++++...+. .........++++++|+|||||||.||||++||+++
T Consensus       166 ~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~~~  245 (660)
T PLN02430        166 DCKSAKRLKAIVSFTSVTEEESDKASQIGVKTYSWIDFLHMGKENPSETNPPKPLDICTIMYTSGTSGDPKGVVLTHEAV  245 (660)
T ss_pred             hcccCCCceEEEEECCCChHHhhhhhcCCcEEEEHHHHHHhhccCCCCCCCcCcCceEEEEECCCCCCCCCEEEeecHHH
Confidence            2122245667777765332111111112334567888775542 122223346899999999999999999999999999


Q ss_pred             HHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCcEEEEeCCCHhhHHHHHhhhcCcEEEeccHHHHH
Q 010455          246 VAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDR  325 (510)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~l~~l~~G~~~v~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~  325 (510)
                      .+.+.............++.+|++++++|++|+++....+.++..|+++++...++..+++.+++++||++.++|.+|+.
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~i~~~~~~~~~l~~~l~~~~pt~~~~vP~~~~~  325 (660)
T PLN02430        246 ATFVRGVDLFMEQFEDKMTHDDVYLSFLPLAHILDRMIEEYFFRKGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFER  325 (660)
T ss_pred             HHHHHHHHhhccccccCCCCCCEEEEeCcHHHHHHHHHHHHHHHcCCEEEEeCCChhhHHHHHHHhCCcEEEecHHHHHH
Confidence            98877653322111124678899999999999999887677899999999887789999999999999999999999999


Q ss_pred             HHHHHHHHhhccChhHHHHHHHHHHhhhhhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHH
Q 010455          326 IYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRV  405 (510)
Q Consensus       326 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~  405 (510)
                      +.+.+.......+.....+++++...+...+..+.......+..+.+.++++++.+|++||.+++||+++++++.++++.
T Consensus       326 l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~i~~~~G~~lr~~~~gga~l~~~~~~~~~~  405 (660)
T PLN02430        326 IHEGIQKALQELNPRRRLIFNALYKYKLAWMNRGYSHKKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIEEFLRV  405 (660)
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCeEEEEEECCCCCCHHHHHHHHH
Confidence            99999888888888899999999999988777654444445667888899999999999999999999999999887766


Q ss_pred             hcCCCeeeeccccccccceecccCCCCccCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchh
Q 010455          406 TSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDL  485 (510)
Q Consensus       406 ~~g~~l~~~yG~tE~~~~~~~~~~~~~~~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~  485 (510)
                      ..++.++++||+||++++++.........++++|+|.|+++++++|.++.+..+.+.++.|||+|+||+++.|||++|+.
T Consensus       406 ~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~~~~evki~d~~~~g~~~~~~~~~GEi~vrg~~v~~GY~~~~e~  485 (660)
T PLN02430        406 TSCAFVVQGYGLTETLGPTTLGFPDEMCMLGTVGAPAVYNELRLEEVPEMGYDPLGEPPRGEICVRGKCLFSGYYKNPEL  485 (660)
T ss_pred             hcCCCeeeecchhhhhhceEeeccccCCCCCCccCCCCceEEEEEEcCCcCcccCCCCCcceEEecCCCccccccCChHH
Confidence            54578999999999988776655444344589999999999999874444434444446899999999999999999999


Q ss_pred             hhhhhccCccccCCe-eeccCCccC
Q 010455          486 TEEVIVDGWFHTGKN-PWQYTFKKL  509 (510)
Q Consensus       486 ~~~~~~~gw~~TGDl-~~d~dG~~~  509 (510)
                      +.++|.||||+|||+ ++|+||++.
T Consensus       486 t~~~~~dGw~~TGDig~~d~dG~l~  510 (660)
T PLN02430        486 TEEVMKDGWFHTGDIGEILPNGVLK  510 (660)
T ss_pred             hhhhhhccceeccceEEECCCCcEE
Confidence            999999999999999 999999865

>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

Probab=100.00  E-value=1.1e-66  Score=528.93  Aligned_cols=441  Identities=33%  Similarity=0.605  Sum_probs=358.5

Q ss_pred             CCCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHH
Q 010455           41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME  120 (510)
Q Consensus        41 ~~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~l  120 (510)
                      ...++..++.++++.+|+.+++...     ..+.++.+||+|+..++.++|.+|+.+|+.+||+|+|++.|+++|+++.+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~a~~~~-----~~~~~~~~ty~e~~~~v~~~a~gL~~lg~~~gdrvai~a~nr~eW~i~d~   88 (613)
T COG1022          14 EIHTLPKRLAERVKDRPDGVALMYK-----ELGGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADL   88 (613)
T ss_pred             hcccHHHHHHHHhhcCCcceeEeee-----cCCcceEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHH
Confidence            3578999999999999998888765     35677999999999999999999999999779999999999999999999


Q ss_pred             HHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCceeee
Q 010455          121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFS  200 (510)
Q Consensus       121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  200 (510)
                      ||+.+|++.||+.+..+++++.++|+.++++++|++..............++.+...+...+.-.... ...........
T Consensus        89 a~~~~g~v~Vp~y~t~~~~~~~~iL~~se~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  167 (613)
T COG1022          89 AILALGAVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVIIDLVREAV-EAKALVLEVFP  167 (613)
T ss_pred             HHHHcCCeEEecCCCCCHHHHHHHHhcCCceEEEecchHHHHHHHhhhccccchhhhhhhhhhhhhcc-chhhccccccc
Confidence            99999999999999999999999999999999999986554433333222121111111111000000 00000000000


Q ss_pred             HHH----HHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhcccc-CCCCcEEEEecCh
Q 010455          201 WEE----FLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKV-CSEEDTYFSFLPL  275 (510)
Q Consensus       201 ~~~----~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~-~~~~d~~~~~~pl  275 (510)
                      ...    ............+..++|+|.|+|||||||.||||++||+|+++++..+....     . ..++|+.++.+|+
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~dDlatiiYTSGTTG~PKGVmLth~N~~~~v~~~~~~~-----~~~~~~d~~LsfLPl  242 (613)
T COG1022         168 DEGISLFLIDSAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVL-----PPIGPGDRVLSFLPL  242 (613)
T ss_pred             cccchhhhhcccccccccCCCCccceEEEEEcCCCCCCCceEEEehHHHHHHHHHHHhhC-----CCCCCCcEEEEeCcH
Confidence            111    11111112222456799999999999999999999999999999999998887     5 8899999999999


Q ss_pred             HHHHHHHHHHH-HHhcCcEEEEeCCCHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhh
Q 010455          276 AHIYDQIIETH-CIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLG  354 (510)
Q Consensus       276 ~h~~g~~~~l~-~l~~G~~~v~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (510)
                      .|++...+.+. .++.|.++ +...++.++++.+++++||+++++|.+|+.+.+.+.+++.+.+...+++|.|+...+..
T Consensus       243 aHi~Er~~~~~~~~~~g~~~-~~~~~~~~~~~dl~~~rPt~m~~VPRvwE~i~~~I~~kv~~~~~~~~~if~~a~~~~~~  321 (613)
T COG1022         243 AHIFERAFEGGLALYGGVTV-LFKEDPRTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYK  321 (613)
T ss_pred             HHHHHHHHHHHHHhhcceEE-EecCCHHHHHHHHHHhCCeEEeechHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence            99999987444 44444444 44559999999999999999999999999999999999999999999999999988754


Q ss_pred             hcc-----cCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeeccccccccceecccC
Q 010455          355 NMK-----KGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLA  429 (510)
Q Consensus       355 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~~~~~~~  429 (510)
                      ...     .+....  .-..+++.|+++++.+|+++|++++||+++++++..+|+.. |+++.++||+||++.+++++.+
T Consensus       322 ~~~~~~~~~~~~~~--~~~~d~LVf~Kir~~lGgri~~~~sGGa~l~~~~~~f~~~l-Gi~i~eGYGlTEts~~~~v~~~  398 (613)
T COG1022         322 KISRALLGGGPLSW--LLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFRSL-GIPILEGYGLTETSAVVSVNPP  398 (613)
T ss_pred             HHHhhhcccCCcch--hhhhhHHHHHHHHHHhCCcEEEEEecCCcCCHHHHHHHHHc-CCCeEEEecccccccceEEccc
Confidence            222     221111  22378899999999999999999999999999999999987 9999999999999999999887


Q ss_pred             CCCccCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhh-ccCccccCCe-eeccCCc
Q 010455          430 DVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGKN-PWQYTFK  507 (510)
Q Consensus       430 ~~~~~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~gw~~TGDl-~~d~dG~  507 (510)
                      +.... +++|.|+|+++++|+|             .|||+||||+||.|||++|+.|.++| .||||+|||+ .+|++|+
T Consensus       399 ~~~~~-gtvG~p~p~~evKI~d-------------~GEilVRG~~Vm~GYyk~pe~Taeaf~~DGWf~TGDlg~~d~~g~  464 (613)
T COG1022         399 DRFVL-GTVGKPLPGIEVKIAD-------------DGEILVRGPNVMKGYYKNPEATAEAFTEDGWFRTGDLGELDEDGY  464 (613)
T ss_pred             cCccc-CCcCCcCCCceEEEcc-------------CceEEEecchhcchhcCChHHHhhhccccCCcccCceeEEcCCCc
Confidence            77666 9999999999999998             49999999999999999999999999 6999999999 9999998


Q ss_pred             cCC
Q 010455          508 KLM  510 (510)
Q Consensus       508 ~~~  510 (510)
                      ++|
T Consensus       465 L~i  467 (613)
T COG1022         465 LVI  467 (613)
T ss_pred             EEE
Confidence            764

>PTZ00342 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.3e-65  Score=544.50  Aligned_cols=474  Identities=24%  Similarity=0.414  Sum_probs=379.6

Q ss_pred             CCCCCCccccccccCCCCCCCCCCCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhC-
Q 010455           19 KPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSR-   97 (510)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~-   97 (510)
                      ..+++++||.....+.  .......++.++|.++++++|+++|+...   + ....++.+||+|+.++++++|++|.++ 
T Consensus        39 ~~~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~~~~p~~~Al~~~---~-~g~~~~~~Ty~el~~~v~~~A~~L~~~~  112 (746)
T PTZ00342         39 NENESSVYCMKDHKKK--SSLYVYKHIMKLLLEKYKLNNNKIAIVEH---S-CGEPQNYITYGNFFKKVLSFSHSLNTYE  112 (746)
T ss_pred             CCCCCCceecCchhhc--ccccccchHHHHHHHHHhhcCCceeEecc---C-CCCCceeeeHHHHHHHHHHHHHHHHHHh
Confidence            4478889998877666  22245789999999999999999999753   2 122357899999999999999999974 


Q ss_pred             --CCCCC-----------CEEEEEcCCchhHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHh
Q 010455           98 --GVNPG-----------DRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSIL  164 (510)
Q Consensus        98 --gv~~g-----------d~Vai~~~ns~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~  164 (510)
                        |+++|           |+|+|+++|+++|+++.+||+++|+++||+++.++.+++.++|++++++++|++.+..+.+.
T Consensus       113 ~~Gv~~g~~~~~~~~g~~d~V~i~~~N~~ew~~~~lA~~~~Gav~Vpl~~~~~~~el~~il~~s~~~~lv~~~~~~~~l~  192 (746)
T PTZ00342        113 GKGIPEKKYNEEQNNGKFKLLGLYGSNSINWLVADLACMLSGVTTLVMHSKFSIDVIVDILNETKLEWLCLDLDLVEGLL  192 (746)
T ss_pred             hcCCCcCccccccccccccEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHhcCCCCEEEEcHHHHHHHH
Confidence              99999           99999999999999999999999999999999999999999999999999999877776665


Q ss_pred             hcCccCCCCccEEEEecCCChhh---------------------------------------------------------
Q 010455          165 SCLPRCCLYLKTIVSFANVSSSQ---------------------------------------------------------  187 (510)
Q Consensus       165 ~~~~~~~~~~~~v~~~~~~~~~~---------------------------------------------------------  187 (510)
                      +... .++.++.++.++......                                                         
T Consensus       193 ~~~~-~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  271 (746)
T PTZ00342        193 ERKN-ELPHLKKLIILDTLIKSKEININKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKDL  271 (746)
T ss_pred             Hhhc-cCCCceEEEEECCCCcccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhHHH
Confidence            5443 235677888876522100                                                         


Q ss_pred             hhHhhhcCceeeeHHHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCc
Q 010455          188 KKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEED  267 (510)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d  267 (510)
                      .............++++..............++++++|+|||||||.||||++||+|+++.+.......   .......|
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~IiYTSGTTG~PKGVmlTH~nl~~~~~~~~~~~---~~~~~~~d  348 (746)
T PTZ00342        272 KEKAKKLGISIILFDDMTKNKTTNYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHS---IFKKYNPK  348 (746)
T ss_pred             HHHhhcCCCEEEEHHHHHhhcccCCCCCCCCccceEEEEEcCCCCCCCCEEEEccHHHHHHHHHHhhcc---cccCCCCC
Confidence            000000111233445544332112223345689999999999999999999999999999887654321   00123558


Q ss_pred             EEEEecChHHHHHHHHHHHHHhcCcEEEEeCCCHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHH
Q 010455          268 TYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEF  347 (510)
Q Consensus       268 ~~~~~~pl~h~~g~~~~l~~l~~G~~~v~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~  347 (510)
                      ++++++|++|++++...+.+++.|+++++.+.++..+++.+++++||+++++|.+|+++.+.+...+...+...+.++++
T Consensus       349 ~~ls~LPL~Hi~~~~~~~~~l~~G~~i~~~~~~~~~l~~di~~~~pT~~~~VP~v~~~i~~~i~~~~~~~~~~~~~~~~~  428 (746)
T PTZ00342        349 THLSYLPISHIYERVIAYLSFMLGGTINIWSKDINYFSKDIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLVKK  428 (746)
T ss_pred             eEEEeCcHHHHHHHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHhCCcEEEchHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence            99999999999999878889999999999877999999999999999999999999999998888888888889999999


Q ss_pred             HHHhhhhhcccCCCCCCchhhHHHH--HHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeecccccccccee
Q 010455          348 AYNYKLGNMKKGMPQNKAAPLLDSL--VFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCF  425 (510)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~~~  425 (510)
                      +...+.......     ..+.++.+  .++++++.+|++||.+++||+++++++.++|+..+|+.++++||+||+++.++
T Consensus       429 a~~~~~~~~~~~-----~~~~~~~~~~v~~kir~~lg~~lr~~~sGGapl~~~~~~~~~~~~g~~i~~gYGlTEt~~~~~  503 (746)
T PTZ00342        429 ILSLRKSNNNGG-----FSKFLEGITHISSKIKDKVNPNLEVILNGGGKLSPKIAEELSVLLNVNYYQGYGLTETTGPIF  503 (746)
T ss_pred             HHHHHHHhhcCC-----cchHHHHHHHHHHHHHHhhCCCeEEEEEcCCCCCHHHHHHHHHhcCCCEEEeeccCcccceee
Confidence            998887643321     12333333  57889999999999999999999999999999888999999999999987666


Q ss_pred             cccCCCCccCCcccccc-CCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhh-ccCccccCCe-ee
Q 010455          426 TSLADVFNMIGTVGVPM-TTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGKN-PW  502 (510)
Q Consensus       426 ~~~~~~~~~~~svG~p~-~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~gw~~TGDl-~~  502 (510)
                      ....... .++++|+|+ |+++++|+|.++......  ++.|||+++||++|.|||++|+.|+++| .||||+|||+ ++
T Consensus       504 ~~~~~~~-~~gsvG~p~~pg~e~ki~d~~~~~~~~~--~~~GEl~vrGp~v~~GY~~~pe~T~~~f~~dGW~~TGDig~~  580 (746)
T PTZ00342        504 VQHADDN-NTESIGGPISPNTKYKVRTWETYKATDT--LPKGELLIKSDSIFSGYFLEKEQTKNAFTEDGYFKTGDIVQI  580 (746)
T ss_pred             eccCCCC-CcccccCcCCCcEEEEEecccccccCCC--CCceEEEEecCcccccccCChhhhhhhcCcCCcccCCcEEEE
Confidence            5544433 448999998 999999998444332222  2579999999999999999999999999 6999999999 99


Q ss_pred             ccCCccCC
Q 010455          503 QYTFKKLM  510 (510)
Q Consensus       503 d~dG~~~~  510 (510)
                      |+||++.+
T Consensus       581 d~dG~l~i  588 (746)
T PTZ00342        581 NKNGSLTF  588 (746)
T ss_pred             CCCCeEEE
Confidence            99998753

>PLN02736 long-chain acyl-CoA synthetase

Probab=100.00  E-value=9e-65  Score=542.16  Aligned_cols=482  Identities=38%  Similarity=0.651  Sum_probs=391.9

Q ss_pred             CCCCCCccccccccCCCCC---CCCCCCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHH
Q 010455           19 KPSGGPVYRCIYAKDGLLE---SPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMR   95 (510)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~---~~~~~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~   95 (510)
                      ...++.+||+.....++-.   .+....++.++|+++++++|+++|+.+....++..+.++.+||+||.++++++|++|+
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~lTy~el~~~v~~lA~~L~   96 (651)
T PLN02736         17 QTGKWNVYRSARSPLKLVSRFPDHPEIGTLHDNFVYAVETFRDYKYLGTRIRVDGTVGEYKWMTYGEAGTARTAIGSGLV   96 (651)
T ss_pred             CCCCCCeecCccccccccccCCCCCCCCCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHH
Confidence            4478889998765533322   2345679999999999999999999643101333344678999999999999999999


Q ss_pred             hCCCCCCCEEEEEcCCchhHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCcc
Q 010455           96 SRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLK  175 (510)
Q Consensus        96 ~~gv~~gd~Vai~~~ns~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~  175 (510)
                      ++|+++||+|+|+++|+++|+++++||+++|++++|+++.++.+++.++++.++++++|++.+..+.+.....+ .+.++
T Consensus        97 ~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~l~~~~~~~~~~~~~~~~-~~~l~  175 (651)
T PLN02736         97 QHGIPKGACVGLYFINRPEWLIVDHACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQTLNTLLSCLSE-IPSVR  175 (651)
T ss_pred             HhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEeecCCCHHHHHHHHhccCCCEEEECHHHHHHHHHHhhc-CCCce
Confidence            99999999999999999999999999999999999999999999999999999999999998776666554432 35566


Q ss_pred             EEEEecCCChhhhhHhhhcCceeeeHHHHHHcCC-CCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhh
Q 010455          176 TIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQ  254 (510)
Q Consensus       176 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~  254 (510)
                      .++..+...................++++.+... .........++++++|+|||||||.||||++||+++++++.....
T Consensus       176 ~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~IlyTSGTTG~PKGV~lsh~~l~~~~~~~~~  255 (651)
T PLN02736        176 LIVVVGGADEPLPSLPSGTGVEIVTYSKLLAQGRSSPQPFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVAGSSL  255 (651)
T ss_pred             EEEEECCCchhhhhhhccCCcEEEEHHHHHHhcccCCCCCCCCCccceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHh
Confidence            6666643221111111111234567887775542 112223456899999999999999999999999999999888776


Q ss_pred             hhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCcEEEEeCCCHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHh
Q 010455          255 MFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKI  334 (510)
Q Consensus       255 ~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~l~~l~~G~~~v~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~  334 (510)
                      .+     .+.++|++++.+|++|++++...+.+++.|+++++.+.++..+++.++++++|+++++|.+|+.+.+.+...+
T Consensus       256 ~~-----~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~i~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~  330 (651)
T PLN02736        256 ST-----KFYPSDVHISYLPLAHIYERVNQIVMLHYGVAVGFYQGDNLKLMDDLAALRPTIFCSVPRLYNRIYDGITNAV  330 (651)
T ss_pred             cc-----CCCCCCEEEEeCCHHHHHHHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHhCCcEEecchHHHHHHHHHHHHHH
Confidence            66     7788999999999999999988888999999999988899999999999999999999999999999999999


Q ss_pred             hccChhHHHHHHHHHHhhhhhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeee
Q 010455          335 SSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQG  414 (510)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~  414 (510)
                      ...+.+...+++++...+...+..+..   ..+.++++.++++++.+|+++|.+++||+++++++.+++.+.+|+.+++.
T Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~lg~~lr~~~~gGa~l~~~~~~~~~~~~g~~~~~~  407 (651)
T PLN02736        331 KESGGLKERLFNAAYNAKKQALENGKN---PSPMWDRLVFNKIKAKLGGRVRFMSSGASPLSPDVMEFLRICFGGRVLEG  407 (651)
T ss_pred             hcccHHHHHHHHHHHHHHHHHHHcCCC---CCchHHHHHHHHHHHHhcCcEEEEEeCCCCCCHHHHHHHHHHhCCCeEEE
Confidence            999999999999998887665554321   22456778888889889899999999999999999999998889999999


Q ss_pred             ccccccccceecccCCCCccCCccccccCCeEEEEeecCCCCcCC-CCCCCcceEEEecCCccccccCCchhhhhhh-cc
Q 010455          415 YGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDA-LSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VD  492 (510)
Q Consensus       415 yG~tE~~~~~~~~~~~~~~~~~svG~p~~g~~i~ivd~~~~~~~~-~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~  492 (510)
                      ||+||++..++....... ..+++|+|+||++++|+|.+++.... ..+++.|||+|+||++|.|||++|+.+.+.| .|
T Consensus       408 YG~TE~~~~~~~~~~~~~-~~~~vG~p~pg~~v~i~d~~~~~~~~~~~~~~~GEl~vrgp~v~~GY~~~~~~t~~~~~~d  486 (651)
T PLN02736        408 YGMTETSCVISGMDEGDN-LSGHVGSPNPACEVKLVDVPEMNYTSEDQPYPRGEICVRGPIIFKGYYKDEVQTREVIDED  486 (651)
T ss_pred             echHHhchheeccCCCCC-CCCccCCccCceEEEEEEccccCcccCCCCCCCceEEecCCccccccccCHHHHHhhhccC
Confidence            999999876665444333 34899999999999999833322111 1123579999999999999999999999999 79


Q ss_pred             CccccCCe-eeccCCccCC
Q 010455          493 GWFHTGKN-PWQYTFKKLM  510 (510)
Q Consensus       493 gw~~TGDl-~~d~dG~~~~  510 (510)
                      |||+|||+ ++|+||++.+
T Consensus       487 gw~~TGDlg~~d~dG~l~i  505 (651)
T PLN02736        487 GWLHTGDIGLWLPGGRLKI  505 (651)
T ss_pred             CCeeccceEEEcCCCcEEE
Confidence            99999999 9999998653

>KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=1.6e-64  Score=482.66  Aligned_cols=495  Identities=34%  Similarity=0.602  Sum_probs=418.7

Q ss_pred             CcceeeeccCCCCCCCCCCCCCCccccccccCCCCCCC-CCCCCHHHHHHHHHhhCCCCcceeeeecc--------CC--
Q 010455            2 SETYTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESP-AGLESPWQFFCDSAKRIPNNQMLGGRKVS--------DG--   70 (510)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~sl~~~l~~~a~~~p~~~a~~~~~~~--------~~--   70 (510)
                      .+++.++..+..     .+.++.+||+....+++-..+ +...|+.+++++.++++.++.++-+++..        |+  
T Consensus         4 ~~~~~V~~~~~~-----n~~e~~p~Rnv~~~~~L~~~~~~g~~Tl~~~~~~~~~k~g~~~~mGtR~li~~h~ek~~dGK~   78 (678)
T KOG1180|consen    4 EKKYRVKAKPAA-----NEHETAPYRNVRSFDGLVSPPNPGASTLYELFEECVKKFGKKDAMGTRELIKEHEEKQVDGKT   78 (678)
T ss_pred             chhcccccCCCC-----CCCCCccccccccCCCccCCCCCCcccHHHHHHHHHHhcCCCccccHHHHHHHHhhccCCCeE
Confidence            345555443332     347899999998766565555 55779999999999999999998665331        11  


Q ss_pred             ----CCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCE-EEEEcCCchhHHHHHHHHHhcCCeEEEecCCCCHHHHHHHH
Q 010455           71 ----KVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDR-CGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFII  145 (510)
Q Consensus        71 ----~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~-Vai~~~ns~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l  145 (510)
                          .-+.+.++||.|+..++..+|.+|.++|++++++ |+|+++.+.+|+++++||++.+.++|.+...+..+.+.+-|
T Consensus        79 f~k~~Lg~Y~w~sy~ev~~~~~~~gsGL~~lG~k~~e~k~~iFa~TraeWm~ta~gC~~q~ipvVT~Y~TLGeeal~hsl  158 (678)
T KOG1180|consen   79 FEKYELGDYKWMSYNEVYERVHNFGSGLVKLGLKPKETKIAIFAETRAEWMITAQGCFSQNIPVVTAYATLGEEALIHSL  158 (678)
T ss_pred             EEEEeccceeeecHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecchHHHHHHHHHHHhcCCeEEEEehhcChhhhhhhh
Confidence                1344668999999999999999999999998877 99999999999999999999999999999999999999999


Q ss_pred             HhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHh----hhcCceeeeHHHHHHcCCCC-CCCCCCCCC
Q 010455          146 NHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEA----EELGVSCFSWEEFLQLGTLD-CELPPKKKT  220 (510)
Q Consensus       146 ~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  220 (510)
                      +.++++.+|++.+.++.+...++ ....++.+|.++..+......+    ...+....+|+++.+.+... .++.+..++
T Consensus       159 ~Et~~~~i~T~~~LL~kl~~~l~-~~~~vk~II~~d~id~~~~~~~v~~i~~p~i~i~Sf~~v~~lG~~~~~~~~~P~p~  237 (678)
T KOG1180|consen  159 NETESTAIFTDSELLPKLKAPLK-QAKTVKHIIYFDPIDYDAAKDDVNSIVRPDIKIISFDDVEKLGKENEIPPHPPKPS  237 (678)
T ss_pred             ccccceEEEeCHHHHHHHHHHHh-ccCceeEEEEecCCCCccchhhhhhhccCCeEEEEHHHHHhhCCcCCCCCCCCCCC
Confidence            99999999999999886655544 3478899999885332222111    22467889999999888332 334445789


Q ss_pred             CeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCcEEEEeCC-
Q 010455          221 NISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG-  299 (510)
Q Consensus       221 ~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~l~~l~~G~~~v~~~~-  299 (510)
                      |+|+|+|||||||.||||+++|+|+++.+.......    ..+.+.|+++.++||.|++.+.+-+.|++.|+.+-..+. 
T Consensus       238 Dia~IMYTSGSTG~PKGVml~H~NiVA~~~G~~~~v----~~lg~~D~yi~yLPLAHIlEl~aE~~~ft~G~~iGY~S~~  313 (678)
T KOG1180|consen  238 DIACIMYTSGSTGLPKGVMLTHSNIVAGVTGVGENV----PELGPKDRYIAYLPLAHILELTAELVCFTWGGRIGYSSPL  313 (678)
T ss_pred             ceEEEEEcCCCCCCCceEEEecccHHhhhhhhcccC----cccCCCceEEEechHHHHHHHHHHHHHHhhCCEeecCCcc
Confidence            999999999999999999999999999999876655    368899999999999999999999999999999876542 


Q ss_pred             ----CHhhHH----HHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhcccCCCCCCchhhHHH
Q 010455          300 ----DVRYLM----EDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDS  371 (510)
Q Consensus       300 ----~~~~~~----~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (510)
                          ....+.    -.+...|||++.++|..|+++-+.+..++.+.+.+...+|..++..+...+++.   ....+.++.
T Consensus       314 TLtdts~ki~kg~kGD~~~lkPTiM~~VpAV~drVrKgVl~kV~~~~~~~k~lF~~aY~~K~~~~~~~---g~~s~~ld~  390 (678)
T KOG1180|consen  314 TLTDTSSKIKKGCKGDLTELKPTIMAAVPAVMDRVRKGVLSKVNAMPGLQKKLFWTAYERKLSLIERN---GPGSPLLDA  390 (678)
T ss_pred             eecccchhhccCCcCccccccchhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhcc---CCchhhHHH
Confidence                111111    124578999999999999999999999999999999999999999999988841   335789999


Q ss_pred             HHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeeccccccccceecccCCCCccCCccccccCCeEEEEee
Q 010455          372 LVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLES  451 (510)
Q Consensus       372 ~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~~~~~~~~~~~~~~svG~p~~g~~i~ivd  451 (510)
                      +.|.++|...|++||++++||+|++++..+++...+.+++.++||.||+++..+...+..... +.+|.|++-++++++|
T Consensus       391 lVFkKIr~~lGG~lR~~LsGGapLS~dtQrF~nic~C~Pv~qGYGLTEtca~~tv~e~~d~~~-g~vG~pl~c~eiKLvd  469 (678)
T KOG1180|consen  391 LVFKKIRALLGGNLRYILSGGAPLSPDTQRFMNICFCCPVLQGYGLTETCAAATVLEPEDFST-GRVGAPLPCCEIKLVD  469 (678)
T ss_pred             HHHHHHHHHhCCceEEEEeCCCCCCHHHHHHHHHhccccccccccccchhcccEecChhhccc-ccccCCccceEEEEEE
Confidence            999999999999999999999999999999999999999999999999998888776666555 8999999999999999


Q ss_pred             cCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhh--ccC--ccccCCe-eeccCCccCC
Q 010455          452 VPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI--VDG--WFHTGKN-PWQYTFKKLM  510 (510)
Q Consensus       452 ~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~--~~g--w~~TGDl-~~d~dG~~~~  510 (510)
                      .++++-...+..+.|||+++|++|..||++||+.|++.|  +||  ||+|||+ ++.+||.+.|
T Consensus       470 w~EgGY~~~~~PPrGEI~i~G~~vt~gY~kn~ekT~e~ft~~~G~~WF~TGDIGe~~pdG~LkI  533 (678)
T KOG1180|consen  470 WEEGGYFAKNKPPRGEILIGGPNVTMGYYKNEEKTKEDFTVEDGQRWFRTGDIGEFHPDGCLKI  533 (678)
T ss_pred             hhhcCccCCCCCCCceEEecCCccChhhhCChhhhhhhceecCCcEEEeccccceecCCCcEEE
Confidence            999987776644689999999999999999999999999  499  9999999 9999998753

>PLN02387 long-chain-fatty-acid-CoA ligase family protein

Probab=100.00  E-value=9.4e-63  Score=527.96  Aligned_cols=482  Identities=33%  Similarity=0.548  Sum_probs=382.2

Q ss_pred             CCccccccccCCCCCCCCCCCCHHHHHHHHHhhCCCCcceeeeecc--------CC------CCCCeEEEeHHHHHHHHH
Q 010455           23 GPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVS--------DG------KVGPYVWLTYQEVYDAAI   88 (510)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~sl~~~l~~~a~~~p~~~a~~~~~~~--------~~------~~~~~~~~Ty~~l~~~v~   88 (510)
                      ..+||+...+.......+...|+.++|+++++++||++|+.++...        ++      ..+.+..+||+|+.++++
T Consensus        38 ~~~~r~~~~~~~~~~~~~~~~t~~~l~~~~~~~~pd~~al~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~v~  117 (696)
T PLN02387         38 GYAIRNARFPELVETPWEGATTLAALFEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITYGQVFERVC  117 (696)
T ss_pred             CCceecCccccccccCCCCCCCHHHHHHHHHHHCCCCceEEEecccccccccccCCcccccccCCCcEEEEHHHHHHHHH
Confidence            3359999865433333355689999999999999999999543110        11      124567799999999999


Q ss_pred             HHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCc
Q 010455           89 RFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLP  168 (510)
Q Consensus        89 ~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~  168 (510)
                      ++|++|.++|+++||+|+|+++|+++|+++++||+++|++++||++.++.+++.++|+.++++++|++.+....+.+...
T Consensus       118 ~lA~~L~~lG~~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~li~~~~~~~~l~~~~~  197 (696)
T PLN02387        118 NFASGLVALGHNKEERVAIFADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEVTTVICDSKQLKKLIDISS  197 (696)
T ss_pred             HHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHccCCCEEEECHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999877666654433


Q ss_pred             cCCCCccEEEEecCCChhhhhH-hhhcCceeeeHHHHHHcCCC-CCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHH
Q 010455          169 RCCLYLKTIVSFANVSSSQKKE-AEELGVSCFSWEEFLQLGTL-DCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIV  246 (510)
Q Consensus       169 ~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~  246 (510)
                       ....++.++.+++........ ..........++++...+.. ........++++++|+|||||||.||||++||++++
T Consensus       198 -~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~I~yTSGTTG~PKGV~lth~~l~  276 (696)
T PLN02387        198 -QLETVKRVIYMDDEGVDSDSSLSGSSNWTVSSFSEVEKLGKENPVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIV  276 (696)
T ss_pred             -ccCCceEEEEECCCCchhhhhhhccCCcEEEEHHHHHHhhccCCCCCCCCCccceEEEEecCCCCCCCCEEEEEcHHHH
Confidence             335677888876543211110 01122345677777655421 222233468999999999999999999999999999


Q ss_pred             HHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCcEEEEeCC----C-----HhhHHHHHhhhcCcEEE
Q 010455          247 AEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG----D-----VRYLMEDIQELKPTMFS  317 (510)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~l~~l~~G~~~v~~~~----~-----~~~~~~~i~~~~~t~~~  317 (510)
                      +++......+    ..+..+|++++++|++|++++...+.++..|+++.+...    +     +..++..+++++||++.
T Consensus       277 ~~~~~~~~~~----~~~~~~d~~l~~lPl~Hi~~~~~~~~~~~~g~~i~~g~~~~l~~~~~~~~~~~~~~i~~~~pT~~~  352 (696)
T PLN02387        277 ATVAGVMTVV----PKLGKNDVYLAYLPLAHILELAAESVMAAVGAAIGYGSPLTLTDTSNKIKKGTKGDASALKPTLMT  352 (696)
T ss_pred             HHHHHHHhhc----CCCCCCCEEEEECcHHHHHHHHHHHHHHHhCCEEEECChhhhcccccccccCchhhHHHhCCcEEE
Confidence            9888765443    146788999999999999999877777888888766332    1     23456789999999999


Q ss_pred             eccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhcccCCC--CCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCC
Q 010455          318 GVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMP--QNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPL  395 (510)
Q Consensus       318 ~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~  395 (510)
                      ++|.+++++.+.........+.+...+++++...+...+....+  .......++.+.++++++.+|+++|.+++||+++
T Consensus       353 ~vP~~l~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~i~~GGapl  432 (696)
T PLN02387        353 AVPAILDRVRDGVRKKVDAKGGLAKKLFDIAYKRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLGGRIRFMLSGGAPL  432 (696)
T ss_pred             ehhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhccCCcccccccchhhHHHHHHHHHHHhCCcEEEEEEcCCCC
Confidence            99999999999888888888889999999998877765432111  1234567889999999999999999999999999


Q ss_pred             CHHHHHHHHHhcCCCeeeeccccccccceecccCCCCccCCccccccCCeEEEEeecCCCCcCCC-CCCCcceEEEecCC
Q 010455          396 PIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDAL-SSVPRGEICLRGNT  474 (510)
Q Consensus       396 ~~~~~~~~~~~~g~~l~~~yG~tE~~~~~~~~~~~~~~~~~svG~p~~g~~i~ivd~~~~~~~~~-~~~~~Gei~v~g~~  474 (510)
                      ++++.++++..+|+.++++||+||++..++....+.. ..+++|+|+|+++++|+|.++++.... .+++.|||+|+||+
T Consensus       433 ~~~~~~~~~~~~g~~v~~~YG~TEt~~~~~~~~~~~~-~~gsvG~p~p~~evkivd~~~~~~~~~~~~~p~GEi~vrGp~  511 (696)
T PLN02387        433 SGDTQRFINICLGAPIGQGYGLTETCAGATFSEWDDT-SVGRVGPPLPCCYVKLVSWEEGGYLISDKPMPRGEIVIGGPS  511 (696)
T ss_pred             CHHHHHHHHHHcCCCeeEeechhhcccceeecCcccC-CCCccCCCCCceEEEEeeccccCcccCCCCCCCceEEeccCc
Confidence            9999999988889999999999999877665544333 348999999999999998555543321 23357999999999


Q ss_pred             ccccccCCchhhhhhh-c--cC--ccccCCe-eeccCCccCC
Q 010455          475 LFSGYYKRPDLTEEVI-V--DG--WFHTGKN-PWQYTFKKLM  510 (510)
Q Consensus       475 v~~gY~~~~~~~~~~~-~--~g--w~~TGDl-~~d~dG~~~~  510 (510)
                      +|.|||++|+.|.++| .  +|  ||+|||+ ++|+||++.+
T Consensus       512 v~~GY~~~pe~T~~~f~~d~~G~~W~~TGDig~~d~dG~l~i  553 (696)
T PLN02387        512 VTLGYFKNQEKTDEVYKVDERGMRWFYTGDIGQFHPDGCLEI  553 (696)
T ss_pred             ccchhcCCHHHHhhhhccccCCCceeecCceEEECCCCcEEE
Confidence            9999999999999998 2  35  9999999 9999998753

>PTZ00216 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.3e-61  Score=518.54  Aligned_cols=480  Identities=30%  Similarity=0.504  Sum_probs=375.7

Q ss_pred             CCCCCCCccccccccC----CCCCCCCCCCCHHHHHHHHHhhCCCCcceeeeecc----------CCC--------CCCe
Q 010455           18 GKPSGGPVYRCIYAKD----GLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVS----------DGK--------VGPY   75 (510)
Q Consensus        18 ~~~~~~~~~~~~~~~~----~~~~~~~~~~sl~~~l~~~a~~~p~~~a~~~~~~~----------~~~--------~~~~   75 (510)
                      ..+..+++||.....+    .+....+...++.++|.++++++|+++|+.+....          ++.        .+..
T Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~p~~~a~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (700)
T PTZ00216         40 ETENASAIYRIAGVTDEEHERLRNEWYYGPNFLQRLERICKERGDRRALAYRPVERVEKEVVKDADGKERTMEVTHFNET  119 (700)
T ss_pred             CCCCCCCcccCcccccchhcccccccCCCCCHHHHHHHHHHhCCCCCeEEEeccccccccccccCCCccccccccccCCc
Confidence            3456778888765432    22211235679999999999999999999875110          110        1235


Q ss_pred             EEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEE
Q 010455           76 VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFV  155 (510)
Q Consensus        76 ~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~  155 (510)
                      +.+||+||.++++++|++|+++|+++||+|+|+++|+++|+++++||+++|++++|+++.++++++.+++++++++++|+
T Consensus       120 ~~lTy~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~lv~  199 (700)
T PTZ00216        120 RYITYAELWERIVNFGRGLAELGLTKGSNVAIYEETRWEWLASIYGIWSQSMVAATVYANLGEDALAYALRETECKAIVC  199 (700)
T ss_pred             eEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEeeCCCCCHHHHHhhhhccCccEEEE
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCceeeeHHHHHHcCC--C--CCCCCCCCCCCeEEEEecCCC
Q 010455          156 QENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGT--L--DCELPPKKKTNISTIMYTSGT  231 (510)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~a~i~~TSGt  231 (510)
                      +......+.............++.+++....    .........+++++...+.  .  ........++++++++|||||
T Consensus       200 ~~~~~~~l~~~~~~~~~~~~~ii~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGT  275 (700)
T PTZ00216        200 NGKNVPNLLRLMKSGGMPNTTIIYLDSLPAS----VDTEGCRLVAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGT  275 (700)
T ss_pred             CHHHHHHHHHhhhhccCCceEEEEECCCccc----cccCCceEEEHHHHHHhCCccccccccCCCCCcccEEEEEEeCCC
Confidence            8766555444332211112245555432211    0112334567888776541  1  111233468999999999999


Q ss_pred             CCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCcEEEEeCCCHhhHHH-----
Q 010455          232 TGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLME-----  306 (510)
Q Consensus       232 TG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~l~~l~~G~~~v~~~~~~~~~~~-----  306 (510)
                      ||.||||++||+++++.+..+...+.........+|++++++|++|+++.......+..|+++++.  ++..+.+     
T Consensus       276 TG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~v~~~--~~~~l~~~~~~~  353 (700)
T PTZ00216        276 TGDPKGVMHTHGSLTAGILALEDRLNDLIGPPEEDETYCSYLPLAHIMEFGVTNIFLARGALIGFG--SPRTLTDTFARP  353 (700)
T ss_pred             CCcCcEEEEEhHHHHHHHHHHHhhcccccCCCCCCCEEEEEChHHHHHHHHHHHHHHHcCCEEEEC--CHHHhhhhhccc
Confidence            999999999999999988776543311111236789999999999999987666678888877663  5555555     


Q ss_pred             --HHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhcccCCCCCCchhhHHHHHHHHHHHHhCCc
Q 010455          307 --DIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGR  384 (510)
Q Consensus       307 --~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (510)
                        .+++++||++.++|.+|+.+.+.....+...+.+++.+++++...+...+..+.    ..+.++.+.++++++.+|++
T Consensus       354 ~~~l~~~~pT~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~v~~~~~~~~g~~  429 (700)
T PTZ00216        354 HGDLTEFRPVFLIGVPRIFDTIKKAVEAKLPPVGSLKRRVFDHAYQSRLRALKEGK----DTPYWNEKVFSAPRAVLGGR  429 (700)
T ss_pred             cchHHHcCCcEEEechHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHcCC----CCchHHHHHHHHHHHHhCCc
Confidence              688999999999999999999988888888888999999999888876665432    34567888899999999999


Q ss_pred             EeEEEEecCCCCHHHHHHHHHhcCCCeeeeccccccccceecccCCCCccCCccccccCCeEEEEeecCCCCcCCCCCCC
Q 010455          385 LQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVP  464 (510)
Q Consensus       385 lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~~~~~~~~~~~~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~  464 (510)
                      +|.+++||+++++++.++++..++ .++++||+||++..++....... ..+++|+|+||++++|+| +++......+++
T Consensus       430 lr~i~~GGa~l~~~~~~~~~~~~~-~l~~~YG~TEt~~~~~~~~~~~~-~~~svG~p~~g~evkI~d-~~~~~~~~~~~~  506 (700)
T PTZ00216        430 VRAMLSGGGPLSAATQEFVNVVFG-MVIQGWGLTETVCCGGIQRTGDL-EPNAVGQLLKGVEMKLLD-TEEYKHTDTPEP  506 (700)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhh-hHhhccCcccccccccccCCCCC-CCCCcCCcCCCeEEEEee-chhhccCCCCCC
Confidence            999999999999999999888778 99999999999876665544333 348999999999999999 554333233446


Q ss_pred             cceEEEecCCccccccCCchhhhhhh-ccCccccCCe-eeccCCccCC
Q 010455          465 RGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGKN-PWQYTFKKLM  510 (510)
Q Consensus       465 ~Gei~v~g~~v~~gY~~~~~~~~~~~-~~gw~~TGDl-~~d~dG~~~~  510 (510)
                      .|||+|+||+++.|||++|+.|.++| .||||+|||+ ++|+||.+.+
T Consensus       507 ~GEL~vrG~~v~~GY~~~pe~T~~~f~~dGw~~TGDig~~d~dG~l~i  554 (700)
T PTZ00216        507 RGEILLRGPFLFKGYYKQEELTREVLDEDGWFHTGDVGSIAANGTLRI  554 (700)
T ss_pred             CceEEEcCCcccchhcCChhHhhhhccccCCeeccceEEEcCCCcEEE
Confidence            89999999999999999999999999 7999999999 9999998753

>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]

Probab=100.00  E-value=1.3e-60  Score=448.80  Aligned_cols=410  Identities=21%  Similarity=0.308  Sum_probs=352.7

Q ss_pred             ccCCCCCCCCCCCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcC
Q 010455           31 AKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGS  110 (510)
Q Consensus        31 ~~~~~~~~~~~~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~  110 (510)
                      ..++..+.|....|+.+.++..+++.||+.|.++.   ...    .++||+|+.+.++.+|++|+++|+++||||++..|
T Consensus        38 ~~~g~~~ipl~~~Tigq~l~~~t~~v~dkea~Vf~---~eg----~R~Tf~~~~~ev~slAaGll~lGL~kGDrVgvwgp  110 (596)
T KOG1177|consen   38 YVHGCSQIPLDSETIGQLLETTTERVPDKEAAVFD---HEG----IRLTFSEFVSEVESLAAGLLSLGLKKGDRVGVWGP  110 (596)
T ss_pred             ccCCCCCCCcccccHHHHHHHHhhccCcceEEEEe---ecc----chhhHHHHHHHHHHHHhhHHhhcCCCCCEEEEecC
Confidence            56778888899999999999999999999999887   322    46999999999999999999999999999999999


Q ss_pred             CchhHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCCh-----hhHhhcC------------ccCCCC
Q 010455          111 NCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI-----PSILSCL------------PRCCLY  173 (510)
Q Consensus       111 ns~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~------------~~~~~~  173 (510)
                      |+.+|+..+|||.++|.+.+++||++...++++.|+..+++++|+...+.     ..+.+..            .+.++.
T Consensus       111 N~~~w~l~~lA~A~AG~v~v~~NP~Yq~~elr~~L~k~~~k~l~~p~~~k~~ny~~~l~~icPEv~~~~~G~lkS~~lp~  190 (596)
T KOG1177|consen  111 NSYEWVLCQLACARAGLVLVNLNPAYQSEELRYVLKKVGCKALFAPPQFKTQNYYETLLEICPEVMRGDPGQLKSELLPE  190 (596)
T ss_pred             ChHHHHHHHHHHHHhceEEeccCcccccHHHHHHHhhcCeEEEEccchhhhchHHHHHHHhhHHhhcCCCcccccccccc
Confidence            99999999999999999999999999999999999999999999986432     2233332            235577


Q ss_pred             ccEEEEecCCChhhhhHhhhcCceeeeHHHHHHcCCCC------CCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHH
Q 010455          174 LKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLD------CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVA  247 (510)
Q Consensus       174 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~  247 (510)
                      +.+++..+++..         ..+.+.++++++....+      .......|++++-|.|||||||.|||+.+||.|+++
T Consensus       191 lthvi~~~ed~~---------~~Ga~~~sev~~~~s~~~~a~l~~~~k~~~pdd~~niQFTSGTTG~PKgatLsH~~~~N  261 (596)
T KOG1177|consen  191 LTHVILADEDHP---------LPGAFLLSEVLKAASKEERAKLADMSKWLSPDDAVNIQFTSGTTGAPKGATLSHYNFLN  261 (596)
T ss_pred             ceEEEecCCCCc---------CCCceehHHHHHhcchHHHHHHHhhhhhcCCCCceEEEeccCCCCCCcceeeehhhhhh
Confidence            777777774432         22355677776655221      112334679999999999999999999999999999


Q ss_pred             HHhhhhhhhhhccccCCCCcEEEEecChHHHHHHH-HHHHHHhcCcEEEEeCC--CHhhHHHHHhhhcCcEEEeccHHHH
Q 010455          248 EVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQI-IETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYD  324 (510)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~-~~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~  324 (510)
                      +.......+     ++.+++++.+..|++|.+|.. .++++|..|+++|++..  ++.+.+++|.++++|.++++|+++.
T Consensus       262 na~~vg~r~-----g~~e~~~i~~~~Pl~H~~G~~~~~ma~l~~gat~Vfp~~~f~~k~alqai~~ekcT~l~gtPtM~~  336 (596)
T KOG1177|consen  262 NARAVGARA-----GYNEKHRICIPNPLYHCFGCVLGVMAALMHGATIVFPAPSFDPKDALQAISNEKCTTLYGTPTMFV  336 (596)
T ss_pred             hHHHHHHHh-----CcCcceEEEecCchHHHHHHHHHHHHHHHhCcEEEeeCCCCChHHHHHHHHhhceEEEecChHHHH
Confidence            999998888     888999999999999999976 58899999999999764  9999999999999999999999999


Q ss_pred             HHHHHHHHHhhccChhHHHHHHHHHHhhhhhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHH
Q 010455          325 RIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLR  404 (510)
Q Consensus       325 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~  404 (510)
                      .+++                                     .+....++++        ++|.++.||+++++++.+.+.
T Consensus       337 Dlln-------------------------------------~~~~~~~~~s--------~lr~~vigGa~~s~eLlk~iv  371 (596)
T KOG1177|consen  337 DLLN-------------------------------------IPQKQQVDLS--------SLRKGVIGGAPVSPELLKLIV  371 (596)
T ss_pred             HHhc-------------------------------------chhhccCchh--------hhhhheeCCCCCCHHHHHHHH
Confidence            9875                                     4445556666        899999999999999999998


Q ss_pred             HhcCCC-eeeeccccccccceecccCCC--CccCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccC
Q 010455          405 VTSGAP-LTQGYGLTESCSGCFTSLADV--FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYK  481 (510)
Q Consensus       405 ~~~g~~-l~~~yG~tE~~~~~~~~~~~~--~~~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~  481 (510)
                      +..+.. +...||+||++.+.+....++  .+...++|+.+++.+..|+| .+|..++.+  ..|||++||+++|.|||+
T Consensus       372 ~~~~m~~i~v~YG~TEts~v~~~~~~~D~~~~~~ksVG~~m~h~Ea~iv~-~~g~~v~~~--~~Gel~iRGY~tMl~Ywg  448 (596)
T KOG1177|consen  372 NQMNMKDIAVAYGLTETSPVLFMSLLGDPPEERIKSVGHLMDHYEAAIVD-KDGSEVPLG--TKGELLIRGYSTMLGYWG  448 (596)
T ss_pred             HhhCceeeEEEeeccccCcceeeecCCCCHHHHHhhhhhccccccccccc-CCCCccccC--CCceEEEEechhheeecC
Confidence            877754 788999999998887766554  33447899999999999999 999999988  779999999999999999


Q ss_pred             Cchhhhhhh-ccCccccCCe-eeccCCccC
Q 010455          482 RPDLTEEVI-VDGWFHTGKN-PWQYTFKKL  509 (510)
Q Consensus       482 ~~~~~~~~~-~~gw~~TGDl-~~d~dG~~~  509 (510)
                      +++.+.++. .|.||+|||+ .+|++|...
T Consensus       449 ~~~kT~eti~~drW~~TGDi~~m~enG~i~  478 (596)
T KOG1177|consen  449 EEEKTKETIGNDRWYDTGDIAVMDENGTIE  478 (596)
T ss_pred             CcccchhhcccccceecCceEEEcCCCcEE
Confidence            999999988 8999999999 999999753

>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=1.7e-59  Score=472.91  Aligned_cols=390  Identities=28%  Similarity=0.401  Sum_probs=318.2

Q ss_pred             hCCCC-cceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCC--CCCCCEEEEEcCCchhHHHHHHHHHhcCCeEEE
Q 010455           55 RIPNN-QMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRG--VNPGDRCGIYGSNCPEWIIAMEACNSQAITYVP  131 (510)
Q Consensus        55 ~~p~~-~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~g--v~~gd~Vai~~~ns~~~~~~~lA~~~~G~~~v~  131 (510)
                      .++++ +.+++.   +.. +  +.+||+|+.+++.++|..|.++|  +++||+|++++||+++++++++||+.+|++..+
T Consensus        28 ~~~~~~~~~i~~---~~~-g--~~~T~~e~~~~~~r~A~~L~~~~~~i~~gDvV~i~~pNs~~~~~~~la~~~~Ga~~~~  101 (537)
T KOG1176|consen   28 VYLDRNTSLVYQ---DSD-G--RELTYSELHDRCRRLASALSELGLGIKKGDVVGILAPNTPEFVELALAVPMAGAVLNP  101 (537)
T ss_pred             ccccCcceEEEe---cCC-C--cEEcHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEEcCCCHHHHHHHHHHHHcCccccc
Confidence            33444 677665   321 1  58999999999999999999875  899999999999999999999999999999999


Q ss_pred             ecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCceeee-HHHHHHcCCC
Q 010455          132 LYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFS-WEEFLQLGTL  210 (510)
Q Consensus       132 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  210 (510)
                      +||.+.+.++..+++.++++++|++....+.+.++.....   ..++++.........   ........ ++.+......
T Consensus       102 ~Np~~~~~ei~~~~~~s~~kiif~d~~~~~~i~~~~~~~~---~~i~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  175 (537)
T KOG1176|consen  102 LNPRLTASEIAKQLKDSKPKLIFVDEDFYDKISEATSKLA---LKIIVLTGDEGVISI---SDLVEDLDAFEDLMPEGLP  175 (537)
T ss_pred             cCcccCHHHHHHHHHhcCCeEEEEcCchHHHHHHHHhhcC---CceEEEecccCcccc---ccccccccchhhccccCCC
Confidence            9999999999999999999999999999988876654332   344444332110000   00001111 3333332211


Q ss_pred             CCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHH-HHh
Q 010455          211 DCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETH-CIH  289 (510)
Q Consensus       211 ~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~l~-~l~  289 (510)
                      .. ..+...+|+++++|||||||.||||++||++++.+........     .....|+.++.+|++|.+|+...+. ++.
T Consensus       176 ~~-~~~~~~dd~~~il~SSGTTg~PKgV~lsHr~~~~~~~~~~~~~-----~~~~~~v~l~~lPl~H~~Gl~~~~~~~~~  249 (537)
T KOG1176|consen  176 DG-IRPVSEDDTAAILYSSGTTGLPKGVVLSHRNLIANTLSIKIGW-----ELTSDDVYLCTLPLFHIYGLITLLLSLLA  249 (537)
T ss_pred             cc-cccCCCCCeEEEecCCCCCCCCceEEEecHHHHHHHHHhhhcc-----cCCCCceEEEechHHHHhHHHHHHHHHHh
Confidence            11 4556779999999999999999999999999999988766555     6777999999999999999998766 566


Q ss_pred             cCcEEEEeCC-CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhcccCCCCCCchhh
Q 010455          290 KGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPL  368 (510)
Q Consensus       290 ~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (510)
                      .|.++++.+. ++..+++.+++|++|+++++|.++..|++                                     .+.
T Consensus       250 ~~~~ii~~~~f~~~~~~~~i~kykvt~~~~vP~~~~~l~~-------------------------------------~p~  292 (537)
T KOG1176|consen  250 GGTTIICLRKFDAELFLDLIEKYKVTHLFLVPPVLNMLAK-------------------------------------SPI  292 (537)
T ss_pred             CCceEEECCCCCHHHHHHHHHHhCEEEEEcChHHHHHHhc-------------------------------------CCc
Confidence            6666666665 99999999999999999999999999985                                     344


Q ss_pred             HHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcC-CCeeeeccccccccceecccCCCCccCCccccccCCeEE
Q 010455          369 LDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG-APLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEA  447 (510)
Q Consensus       369 ~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g-~~l~~~yG~tE~~~~~~~~~~~~~~~~~svG~p~~g~~i  447 (510)
                      ..+++++        ++|.+++||+++++++.+++++.++ ..+.++||+||+++.++.+.......++++|+++++.++
T Consensus       293 ~~~~~l~--------sl~~v~~gga~~~~~~~~~~~~~l~~~~v~q~YGmTE~~~~~~~~~~~~e~k~~svG~~~~g~~~  364 (537)
T KOG1176|consen  293 VKKYDLS--------SLRSVLSGGAPLSPATLEKVKERLPNVTVIQGYGMTEAGGLITSNDWGPERKPGSVGRLLPGVRV  364 (537)
T ss_pred             cCcccCC--------ccEEEEecCCCCCHHHHHHHHHhCCCceEEEeeccccccCceeecCCCccCcccccCccccceEE
Confidence            5556665        9999999999999999999999998 889999999999977766655544566999999999999


Q ss_pred             EEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhhc-cCccccCCe-eeccCCccCC
Q 010455          448 RLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV-DGWFHTGKN-PWQYTFKKLM  510 (510)
Q Consensus       448 ~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~-~gw~~TGDl-~~d~dG~~~~  510 (510)
                      +|.+ +.|..++.+  +.||||++|++++.||++||+.|++.|. +|||+|||+ ++|+||++.|
T Consensus       365 ~v~~-e~g~~l~~~--~~GEI~vrg~~imkGY~~NpeaT~~~~~~~GW~~TGDiGy~D~DG~l~I  426 (537)
T KOG1176|consen  365 KVLD-ETGVSLGPN--QTGEICVRGPQVMKGYLKNPEATKEAFDDDGWFHTGDLGYFDEDGYLYI  426 (537)
T ss_pred             EeeC-CCCCCCCCC--CceEEEEECcccchhhcCChHHHHhhcccCCccccCceEEEcCCCeEEE
Confidence            9998 888777666  8999999999999999999999999994 499999999 9999998764

>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=1.7e-58  Score=481.13  Aligned_cols=401  Identities=28%  Similarity=0.404  Sum_probs=327.0

Q ss_pred             CCCCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHH
Q 010455           40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM  119 (510)
Q Consensus        40 ~~~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~  119 (510)
                      ....++.++|.++++++|+++|+.+.   +..    ..+||+||.++++++|.+|++.|+++||+|+|+++|++++++++
T Consensus         8 ~~~~~~~~~l~~~a~~~~~~~a~~~~---~~~----~~~Ty~el~~~~~~~A~~L~~~~v~~gdrVail~~N~~e~~~~~   80 (534)
T COG0318           8 TAELTLASLLERAARRNPDRPALIFL---GRG----GRLTYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAF   80 (534)
T ss_pred             cccccHHHHHHHHHHhCCCceEEEEc---CCC----ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHH
Confidence            44679999999999999999999987   432    15999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCceee
Q 010455          120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCF  199 (510)
Q Consensus       120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  199 (510)
                      |||+++|++++|+||.+...++.++++.++++.++++.+....+....... .....+..........          ..
T Consensus        81 ~a~~~~Gav~vpln~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----------~~  149 (534)
T COG0318          81 LAALRAGAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFAALLEAVAEAL-PVVLVVLLVGDADDRL----------PI  149 (534)
T ss_pred             HHHHhcCEEEeecCcccCHHHHHHHHHhcCCeEEEEcccchhHHHHHhccC-CcceEEEecccccccc----------cc
Confidence            999999999999999999999999999999999999988444433332222 2222222222211100          02


Q ss_pred             eHHHHHHcCC-CCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhcccc--CCCCcEEEEecChH
Q 010455          200 SWEEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKV--CSEEDTYFSFLPLA  276 (510)
Q Consensus       200 ~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~--~~~~d~~~~~~pl~  276 (510)
                      .++.+..... ........+++++++++|||||||.||||++||+|++.+...+...+     .  ++..|++++++|++
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgv~~th~~~~~~~~~~~~~~-----~~~~~~~d~~l~~lPl~  224 (534)
T COG0318         150 TLEALAAEGPGPDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAAL-----GGGLTPDDVVLSWLPLF  224 (534)
T ss_pred             cHHHHhhccCCcccccCCCCCCCEEEEEeCCCCCCCCCEeEEecHhHHHHHHHHHHHh-----cccCCCCceEEEecChH
Confidence            3455533221 11122226789999999999999999999999999999999888877     6  88999999999999


Q ss_pred             HHHHHHHHHH-HHhcCcEEEEeC---CCHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhh
Q 010455          277 HIYDQIIETH-CIHKGCSIGFWR---GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYK  352 (510)
Q Consensus       277 h~~g~~~~l~-~l~~G~~~v~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (510)
                      |.+|+...+. .++.|+++++.+   +++..++..+.++++|++.++|+++..++.+                       
T Consensus       225 H~~Gl~~~~~~~~~~G~~~v~~~~~~f~~~~~~~~i~~~~~t~~~~vPt~~~~ll~~-----------------------  281 (534)
T COG0318         225 HIFGLIVGLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDN-----------------------  281 (534)
T ss_pred             HHHHHHHHHHHHHHcCCEEEeCCCCCcCHHHHHHHHHHhcceEEecchHHHHHHHhC-----------------------
Confidence            9999997554 699999999987   4999999999999999999999999998752                       


Q ss_pred             hhhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcC-CCeeeeccccccccceecccCCC
Q 010455          353 LGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG-APLTQGYGLTESCSGCFTSLADV  431 (510)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g-~~l~~~yG~tE~~~~~~~~~~~~  431 (510)
                                    +.....+++       ++||.+++||+++++++.+.+++.++ ..+++.||+||++..++......
T Consensus       282 --------------~~~~~~~~~-------~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~  340 (534)
T COG0318         282 --------------PEKDDDDLS-------SSLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTINPPDD  340 (534)
T ss_pred             --------------CccCccccc-------cceEEEEecCCcCCHHHHHHHHHHhCCCceEEeecccccCceeecCCCch
Confidence                          112222221       03999999999999999999999998 46999999999998777766665


Q ss_pred             -CccCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhhcc-CccccCCe-eeccCCcc
Q 010455          432 -FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVD-GWFHTGKN-PWQYTFKK  508 (510)
Q Consensus       432 -~~~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~-gw~~TGDl-~~d~dG~~  508 (510)
                       ....+++|+|+||++++|+| ++++...+  |++|||+|+||+|+.|||++|+.+.+.|.+ |||+|||+ ++|+||+.
T Consensus       341 ~~~~~~~~G~~~pg~~v~Ivd-~~~~~~~p--g~vGei~irgp~v~~GY~~~pe~t~~~f~~~gW~~TGDlg~~d~~G~l  417 (534)
T COG0318         341 LLAKPGSVGRPLPGVEVRIVD-PDGGEVLP--GEVGEIWVRGPNVMKGYWNRPEATAEAFDEDGWLRTGDLGYVDEDGYL  417 (534)
T ss_pred             hhhcCCcccccCCCcEEEEEe-CCCCccCC--CCceEEEEECchhhhhhcCChHHHHHhhccCCeeeecceEEEcCCccE
Confidence             23447889999999999999 66653333  489999999999999999999999998864 99999999 99999986


Q ss_pred             CC
Q 010455          509 LM  510 (510)
Q Consensus       509 ~~  510 (510)
                      .|
T Consensus       418 ~i  419 (534)
T COG0318         418 YI  419 (534)
T ss_pred             EE
Confidence            53

>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

Probab=100.00  E-value=5.2e-57  Score=452.34  Aligned_cols=391  Identities=20%  Similarity=0.249  Sum_probs=322.0

Q ss_pred             HHHHHHHHhh-CCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHh-CCCCCCCEEEEEcCCchhHHHHHHHHH
Q 010455           46 WQFFCDSAKR-IPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRS-RGVNPGDRCGIYGSNCPEWIIAMEACN  123 (510)
Q Consensus        46 ~~~l~~~a~~-~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~-~gv~~gd~Vai~~~ns~~~~~~~lA~~  123 (510)
                      ...++++... .+|+.|+++.   ++..+. +.+||+||.+.++++|+.|++ .|+ +||||++++||.+|.++++|||+
T Consensus        12 ~n~~dr~~~~~~~~~~aii~~---~e~~~~-~~~Ty~~L~~~v~r~A~~L~~~~gv-kGDrV~iymp~~pe~~~a~LA~~   86 (528)
T COG0365          12 LNALDRHLEADRPDDTAIIFD---GEDGLF-RELTYGDLRREVARLANALKDLGGV-KGDRVAIYMPNSPEAVIALLATA   86 (528)
T ss_pred             hhhhhhhhhccCCCceEEEEE---cCCCCc-eEEEHHHHHHHHHHHHHHHHHhCCC-CCCEEEEEcCCCHHHHHHHHHHH
Confidence            3356666653 4789999988   554444 899999999999999999997 578 99999999999999999999999


Q ss_pred             hcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccC--CCCccEEEEecCCChhhhhHhhhcCceeeeH
Q 010455          124 SQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRC--CLYLKTIVSFANVSSSQKKEAEELGVSCFSW  201 (510)
Q Consensus       124 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  201 (510)
                      ++|++.+|+.+.++++.+...+++++++++|+.+.............  ...+..+++.....              ..|
T Consensus        87 riGAI~~~vf~~f~~~al~~Ri~d~~~k~vit~d~~~~~gk~~~~~~~~~~~~~~~iv~~r~~--------------~~~  152 (528)
T COG0365          87 RIGAIPAVVSPGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADAVLSSVVVVPRLG--------------LWY  152 (528)
T ss_pred             HcCCEEeecccCCCHHHHHHHHHccCCCEEEEecccccccccccchhHHHHhhcceEEecccc--------------ccH
Confidence            99999999999999999999999999999999987655432211100  00000133332221              567


Q ss_pred             HHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHH
Q 010455          202 EEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ  281 (510)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~  281 (510)
                      .++...........+...+|+++++|||||||.||||+++|.+++..........    ..+.++|++++..++.|+.|.
T Consensus       153 ~~~~~~~~~~~~~~~~~~~dpl~ilYTSGTTG~PKgv~H~~gg~l~~~~~~~~~~----~~~~~~Dv~w~~ad~GW~~g~  228 (528)
T COG0365         153 DEAVEKASEKFEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFH----GDLLPGDRFWNSSDPGWIYGL  228 (528)
T ss_pred             HHHhhccCCCCCccccCCCCeEEEEeCCCCCCCCceEEEeCchHHHHHHHHHHHh----hCCCCCCEEEeCCCchhhhCc
Confidence            7777665444444557899999999999999999999999998777776654422    267799999999999999999


Q ss_pred             HH-HHHHHhcCcEEEEeCC----CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhc
Q 010455          282 II-ETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNM  356 (510)
Q Consensus       282 ~~-~l~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (510)
                      .. ++.+|..|+++++.++    ++.++++.|+++++|++++.|+.+++|.+                            
T Consensus       229 ~~~v~~pL~~Gat~~~~eg~p~~~~~~~~~~ie~~~vt~~~tsPT~~R~l~~----------------------------  280 (528)
T COG0365         229 WYSVFSPLASGATTVLYDGRPFYSPERLWEALEKYKVTIFGTSPTFLRRLMK----------------------------  280 (528)
T ss_pred             hHHHHHHHhcCCeEEEeCCCCCCCHHHHHHHHHHhCCceEeeCHHHHHHHHh----------------------------
Confidence            86 8899999999999875    38899999999999999999999999975                            


Q ss_pred             ccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeeccccccccceecccCCCCccCC
Q 010455          357 KKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIG  436 (510)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~~~~~~~~~~~~~~  436 (510)
                               ....++++++        +||.+.++|||++++..+++.+.+|++|.+.||+||++.+.....+ ..+. +
T Consensus       281 ---------~g~~~~~dls--------sLr~~~SaGEPLnpe~~~w~~~~~g~~i~d~~gqTEtg~~~~~~~~-~~~~-g  341 (528)
T COG0365         281 ---------LGLGEPYDLS--------SLRVLGSAGEPLNPEAFEWFYSALGVWILDIYGQTETGMGFIAGRP-PVKN-G  341 (528)
T ss_pred             ---------cCCcccccch--------hheeeeccCCCCCHHHHHHHHHHhCCCEeccccccccCccccCCCC-CcCC-C
Confidence                     1115666676        9999999999999999999999999999999999999966555544 3333 5


Q ss_pred             ccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecC--CccccccCCchhhhhhhccCccccCCe-eeccCCccCC
Q 010455          437 TVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGN--TLFSGYYKRPDLTEEVIVDGWFHTGKN-PWQYTFKKLM  510 (510)
Q Consensus       437 svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~--~v~~gY~~~~~~~~~~~~~gw~~TGDl-~~d~dG~~~~  510 (510)
                      +.|+|+||+++.|+| ++|++++.+  + |+|+++.+  +++++||++|+.+.+++-++||.|||. ++|+||++.+
T Consensus       342 ~~g~p~pG~~~~vvd-d~g~~~~~~--~-G~Lvi~~~~p~~~~~~w~d~er~~~~y~~~~y~tGD~~~~DedGy~~i  414 (528)
T COG0365         342 SSGLPLPGYAVRRVD-DEGNPVPPG--V-GELVVRLPWPGMALTYWNDPERYKEAYFGRWYRTGDWAERDEDGYFWL  414 (528)
T ss_pred             CCCCCCCCceeEEEC-CCCCcCCCC--c-eEEEEeCCCchhhhhhhCCHHHHHHHHhhceeecCceeEEccCCCEEE
Confidence            569999999999999 778877776  6 99999986  999999999999999885559999999 9999999853

>PTZ00237 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.9e-55  Score=466.21  Aligned_cols=417  Identities=16%  Similarity=0.188  Sum_probs=315.9

Q ss_pred             CCCHHHHHHHHHhh--CCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHH
Q 010455           42 LESPWQFFCDSAKR--IPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM  119 (510)
Q Consensus        42 ~~sl~~~l~~~a~~--~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~  119 (510)
                      .|...++|+++++.  +|+++|+++.   .+..+..+.+||+||.++++++|..|+++|+++||+|+++++|++++++++
T Consensus        58 ~n~~~~~l~~~~~~~~~~~~~A~~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GDrV~i~~~n~~e~~~~~  134 (647)
T PTZ00237         58 LNTCYNVLDIHVKNPLKRDQDALIYE---CPYLKKTIKLTYYQLYEKVCEFSRVLLNLNISKNDNVLIYMANTLEPLIAM  134 (647)
T ss_pred             eeHHHHHHHHhhcccCCCCceEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHH
Confidence            46678889888764  7999999875   433333478999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCC---------ChhhHhhcCccCCCCccEEEEecCCCh-hhhh
Q 010455          120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQEN---------KIPSILSCLPRCCLYLKTIVSFANVSS-SQKK  189 (510)
Q Consensus       120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~---------~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~  189 (510)
                      |||+++|++++|+++.++.+++..++++++++++|+++.         ..+.+.++..........++.+..... ....
T Consensus       135 lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~  214 (647)
T PTZ00237        135 LSCARIGATHCVLFDGYSVKSLIDRIETITPKLIITTNYGILNDEIITFTPNLKEAIELSTFKPSNVITLFRNDITSESD  214 (647)
T ss_pred             HHHHHhCcEEEeeCCCCCHHHHHHHHHhcCCCEEEEcccceeCCceechHHHHHHHHhcccCCCCEEEEEEcCCcccccc
Confidence            999999999999999999999999999999999999763         122222222211111234444321110 0000


Q ss_pred             H----hhhcCceeeeHHHHHHcC-----CCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHH-HHHHHhhhhhhhhhc
Q 010455          190 E----AEELGVSCFSWEEFLQLG-----TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQA-IVAEVLSVDQMFVVT  259 (510)
Q Consensus       190 ~----~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~-l~~~~~~~~~~~~~~  259 (510)
                      .    ..........|++++...     ..........++++++|+|||||||.||||+++|.+ +.+....+...+   
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~---  291 (647)
T PTZ00237        215 LKKIETIPTIPNTLSWYDEIKKIKENNQSPFYEYVPVESSHPLYILYTSGTTGNSKAVVRSNGPHLVGLKYYWRSII---  291 (647)
T ss_pred             cccccccCCCcccccHHHHHhhhccccCCCCCCceeeCCCCcEEEEEcCCCCCCCCeEEEcCcHHHHHHHHHHHHhc---
Confidence            0    000000123466655421     111122345679999999999999999999999998 444333323333   


Q ss_pred             cccCCCCcEEEEecChHHHHHHHHHHHHHhcCcEEEEeCCC-------HhhHHHHHhhhcCcEEEeccHHHHHHHHHHHH
Q 010455          260 GKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGD-------VRYLMEDIQELKPTMFSGVPRVYDRIYTGISN  332 (510)
Q Consensus       260 ~~~~~~~d~~~~~~pl~h~~g~~~~l~~l~~G~~~v~~~~~-------~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~  332 (510)
                        ....+|++++..|+.|+.+...++.+|+.|+++++.+++       +..+++.++++++|++.++|++++.|++....
T Consensus       292 --~~~~~d~~~~~~~~~w~~~~~~~~~~l~~G~t~v~~~~~~~~p~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~  369 (647)
T PTZ00237        292 --EKDIPTVVFSHSSIGWVSFHGFLYGSLSLGNTFVMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTDPE  369 (647)
T ss_pred             --CCCCCcEEEEcCCCceEeeHHHHHHHHhCCcEEEEeCCCCCCCCCchHHHHHHHHHhCeEEEEeCHHHHHHHHhhCcc
Confidence              566789999999999987666688899999999997752       57899999999999999999999998752100


Q ss_pred             HhhccChhHHHHHHHHHHhhhhhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCee
Q 010455          333 KISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLT  412 (510)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~  412 (510)
                      .                                ......++++        +||.+++||+++++++.+++++.+|+.++
T Consensus       370 ~--------------------------------~~~~~~~~l~--------~Lr~i~~~G~~l~~~~~~~~~~~~g~~i~  409 (647)
T PTZ00237        370 A--------------------------------TIIRSKYDLS--------NLKEIWCGGEVIEESIPEYIENKLKIKSS  409 (647)
T ss_pred             c--------------------------------cccccccCcc--------hheEEEecCccCCHHHHHHHHHhcCCCEE
Confidence            0                                0001122333        89999999999999999999999999999


Q ss_pred             eeccccccccceecccCCCCccCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecC---CccccccCCchhhhhh
Q 010455          413 QGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGN---TLFSGYYKRPDLTEEV  489 (510)
Q Consensus       413 ~~yG~tE~~~~~~~~~~~~~~~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~---~v~~gY~~~~~~~~~~  489 (510)
                      +.||+||++.+.+..........+++|+|+||++++|+| ++|.+++.|  +.|||+++||   +++.|||++++.+.+.
T Consensus       410 ~~yG~TE~~~~~~~~~~~~~~~~~s~G~p~~g~~~~i~d-~~g~~~~~g--e~GEl~v~~p~~p~~~~gy~~~~~~~~~~  486 (647)
T PTZ00237        410 RGYGQTEIGITYLYCYGHINIPYNATGVPSIFIKPSILS-EDGKELNVN--EIGEVAFKLPMPPSFATTFYKNDEKFKQL  486 (647)
T ss_pred             eeechHHhChhhhccCCCCCCCCCCCccCcCCceEEEEC-CCCCCCCCC--CceEEEEeccCCchhhCceeCCHHHHHHH
Confidence            999999998655443332223347999999999999999 888887765  8999999986   7899999999999888


Q ss_pred             hc--cCccccCCe-eeccCCccC
Q 010455          490 IV--DGWFHTGKN-PWQYTFKKL  509 (510)
Q Consensus       490 ~~--~gw~~TGDl-~~d~dG~~~  509 (510)
                      |.  +|||+|||+ ++|+||++.
T Consensus       487 f~~~~g~~~TGDlg~~d~dG~l~  509 (647)
T PTZ00237        487 FSKFPGYYNSGDLGFKDENGYYT  509 (647)
T ss_pred             HhCCCCEEECCcEEEECCCCeEE
Confidence            83  799999999 999999875

>PLN02654 acetate-CoA ligase

Probab=100.00  E-value=1.9e-54  Score=462.35  Aligned_cols=414  Identities=16%  Similarity=0.202  Sum_probs=317.2

Q ss_pred             CCHHHHHHHHHh-hCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHH
Q 010455           43 ESPWQFFCDSAK-RIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (510)
Q Consensus        43 ~sl~~~l~~~a~-~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA  121 (510)
                      |...++|+++++ .+|+++|+++.   +...+..+.+||+||.++++++|++|++.|+++||+|+++++|++++++++||
T Consensus        88 N~~~~~l~~~~~~~~~~~~Al~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~pn~~e~v~a~lA  164 (666)
T PLN02654         88 NICYNCLDRNVEAGNGDKIAIYWE---GNEPGFDASLTYSELLDRVCQLANYLKDVGVKKGDAVVIYLPMLMELPIAMLA  164 (666)
T ss_pred             eHHHHHHHHhhccCCCCCEEEEEE---cCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence            455778888876 48999999875   43334457899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhh---------HhhcCccC---CCCccEEEEecCCChhhhh
Q 010455          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPS---------ILSCLPRC---CLYLKTIVSFANVSSSQKK  189 (510)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~---------~~~~~~~~---~~~~~~v~~~~~~~~~~~~  189 (510)
                      |+++|++++|+++.++.+++..++++++++++|+++.....         +..+....   ......++...........
T Consensus       165 ~~~~Gav~vpv~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (666)
T PLN02654        165 CARIGAVHSVVFAGFSAESLAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVGICLTYENQLAMKRE  244 (666)
T ss_pred             HHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHHHHhccccCCCccEEEEeccccccccc
Confidence            99999999999999999999999999999999998764321         11111110   0111222222221100000


Q ss_pred             HhhhcCceeeeHHHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHH-hhhhhhhhhccccCCCCcE
Q 010455          190 EAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEV-LSVDQMFVVTGKVCSEEDT  268 (510)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~-~~~~~~~~~~~~~~~~~d~  268 (510)
                      ...........++++..............++++++|+|||||||.||||+++|.+++... ..+...+     +++++|+
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ilyTSGTTG~PKgVv~sh~~~~~~~~~~~~~~~-----~~~~~d~  319 (666)
T PLN02654        245 DTKWQEGRDVWWQDVVPNYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAF-----DYKPTDV  319 (666)
T ss_pred             ccccccCCcccHHHHhhcCCCCCCceecCCCCceEEEecCCCCCCCceEEecccHHHHHHHHHHHHhc-----CCCCCcE
Confidence            000000012234454432211112233567999999999999999999999999986543 4444444     7889999


Q ss_pred             EEEecChHHHHHHHH-HHHHHhcCcEEEEeCC-----CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHH
Q 010455          269 YFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSK  342 (510)
Q Consensus       269 ~~~~~pl~h~~g~~~-~l~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~  342 (510)
                      +++.+|+.|..|... ++.+|+.|+++++.++     ++..+++.|+++++|+++++|++++.|.+.-.           
T Consensus       320 ~~~~~~~~~~~g~~~~~~~~L~~G~tvvl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~-----------  388 (666)
T PLN02654        320 YWCTADCGWITGHSYVTYGPMLNGATVLVFEGAPNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDGD-----------  388 (666)
T ss_pred             EEEcCCchhhhhhHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhhCc-----------
Confidence            999999999998764 6789999999999863     78999999999999999999999999875210           


Q ss_pred             HHHHHHHHhhhhhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcC---CCeeeeccccc
Q 010455          343 KLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG---APLTQGYGLTE  419 (510)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g---~~l~~~yG~tE  419 (510)
                                              .....++++        +||.++++|+++++++.+++.+.+|   +.+.+.||+||
T Consensus       389 ------------------------~~~~~~~l~--------~Lr~i~~~Ge~l~~~~~~~~~~~~g~~~~~i~~~yg~TE  436 (666)
T PLN02654        389 ------------------------EYVTRHSRK--------SLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTE  436 (666)
T ss_pred             ------------------------cccccCChh--------heeEEEEecCCCCHHHHHHHHHHhCCCCCceeccccccc
Confidence                                    011223333        8999999999999999999999887   68999999999


Q ss_pred             cccceecccCCC-CccCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEec--CCccccccCCchhhhhhh---ccC
Q 010455          420 SCSGCFTSLADV-FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRG--NTLFSGYYKRPDLTEEVI---VDG  493 (510)
Q Consensus       420 ~~~~~~~~~~~~-~~~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g--~~v~~gY~~~~~~~~~~~---~~g  493 (510)
                      +++......+.. ...++++|+|+||++++|+| ++|++++.+  +.|||+|++  |+++.|||++++.+.+.+   .+|
T Consensus       437 ~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d-~~g~~~~~~--~~Gel~v~~~~p~~~~gy~~~~~~~~~~~~~~~~g  513 (666)
T PLN02654        437 TGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGKEIEGE--CSGYLCVKKSWPGAFRTLYGDHERYETTYFKPFAG  513 (666)
T ss_pred             cCCeeeccCCCCCCCCCCccCCCCCCceEEEEC-CCCCCCCCC--CceEEEEcCCCchhhhhhcCChHHHHHhhhhcCCC
Confidence            987665544322 33458999999999999999 888877654  789999998  789999999999887776   389


Q ss_pred             ccccCCe-eeccCCccCC
Q 010455          494 WFHTGKN-PWQYTFKKLM  510 (510)
Q Consensus       494 w~~TGDl-~~d~dG~~~~  510 (510)
                      ||+|||+ ++|+||.+.+
T Consensus       514 ~~~TGD~~~~d~dG~l~i  531 (666)
T PLN02654        514 YYFSGDGCSRDKDGYYWL  531 (666)
T ss_pred             EEEeCceEEECCCCcEEE
Confidence            9999999 9999998753

>PRK08180 feruloyl-CoA synthase; Reviewed

Probab=100.00  E-value=4.3e-54  Score=457.09  Aligned_cols=395  Identities=19%  Similarity=0.334  Sum_probs=307.9

Q ss_pred             CCCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHH
Q 010455           41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME  120 (510)
Q Consensus        41 ~~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~l  120 (510)
                      .+.++.++|+++++++|+++|+++.   + ..+.++.+||+||.++++++|.+|.+.|+++||+|+++++|++++++++|
T Consensus        37 ~~~~l~~~l~~~a~~~p~~~a~~~~---~-~~~~~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~Vai~~~n~~e~~~~~l  112 (614)
T PRK08180         37 YPRRLTDRLVHWAQEAPDRVFLAER---G-ADGGWRRLTYAEALERVRAIAQALLDRGLSAERPLMILSGNSIEHALLAL  112 (614)
T ss_pred             cCccHHHHHHHHHHHCCCCceeeec---c-CCCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHH
Confidence            3578999999999999999999864   3 22335789999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEEecCCCC-----HHHHHHHHHhcCccEEEEcCCC--hhhHhhcCccCCCCccEEEEecCCChhhhhHhhh
Q 010455          121 ACNSQAITYVPLYDTLG-----ANAVEFIINHAEVSIAFVQENK--IPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEE  193 (510)
Q Consensus       121 A~~~~G~~~v~l~~~~~-----~~~l~~~l~~~~~~~vi~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  193 (510)
                      ||+++|++++|+++.++     .+++.++++.++++++|+++..  ...+.....   ... .++.......        
T Consensus       113 A~~~~Gav~vpl~~~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~---~~~-~~i~~~~~~~--------  180 (614)
T PRK08180        113 AAMYAGVPYAPVSPAYSLVSQDFGKLRHVLELLTPGLVFADDGAAFARALAAVVP---ADV-EVVAVRGAVP--------  180 (614)
T ss_pred             HHHHcCCeEeeeccccccccCCHHHHHHHHhcCCCcEEEEcCHHHHHHHHhhhcc---CCc-eEEEecCCCC--------
Confidence            99999999999999988     7999999999999999998642  122211111   111 2222221100        


Q ss_pred             cCceeeeHHHHHHcCCCC---CCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCC--CCcE
Q 010455          194 LGVSCFSWEEFLQLGTLD---CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCS--EEDT  268 (510)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~--~~d~  268 (510)
                       ......++++.......   .......++++++|+|||||||.||||++||+++.+++......+     ...  ..++
T Consensus       181 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~~~~~  254 (614)
T PRK08180        181 -GRAATPFAALLATPPTAAVDAAHAAVGPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTF-----PFLAEEPPV  254 (614)
T ss_pred             -CcccccHHHHhccccccchhhhccCCCcCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHhhc-----cccCCCCcE
Confidence             00123455554432111   111234578999999999999999999999999999888766655     332  5689


Q ss_pred             EEEecChHHHHHHHH-HHHHHhcCcEEEEeCC-----CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHH
Q 010455          269 YFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSK  342 (510)
Q Consensus       269 ~~~~~pl~h~~g~~~-~l~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~  342 (510)
                      +++++|++|.+|+.. ++.+++.|+++++.+.     ....+++.++++++|+++++|.+|..|++.+..          
T Consensus       255 ~l~~lPl~h~~g~~~~~~~~l~~G~~v~~~~~~~~~~~~~~~l~~i~~~~~t~~~~vP~~~~~l~~~~~~----------  324 (614)
T PRK08180        255 LVDWLPWNHTFGGNHNLGIVLYNGGTLYIDDGKPTPGGFDETLRNLREISPTVYFNVPKGWEMLVPALER----------  324 (614)
T ss_pred             EEEecchHHHhhHHHHHHHHHhcCCEEEEeCCCccchhHHHHHHHHHHhCCcEEechHHHHHHHHHHHHh----------
Confidence            999999999999864 6779999999998753     335788899999999999999999998764321          


Q ss_pred             HHHHHHHHhhhhhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHh----cC--CCeeeecc
Q 010455          343 KLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVT----SG--APLTQGYG  416 (510)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~----~g--~~l~~~yG  416 (510)
                                             .+.....++        ++||.+++||+++++++.+++.+.    +|  +.+++.||
T Consensus       325 -----------------------~~~~~~~~~--------~~lr~v~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~YG  373 (614)
T PRK08180        325 -----------------------DAALRRRFF--------SRLKLLFYAGAALSQDVWDRLDRVAEATCGERIRMMTGLG  373 (614)
T ss_pred             -----------------------chhhhhhhc--------cceeEEEEccCCCCHHHHHHHHHHHHhhcCCCceeeeeec
Confidence                                   111112222        389999999999999999988874    34  67999999


Q ss_pred             ccccccceecccCCCCccCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhh-ccCcc
Q 010455          417 LTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWF  495 (510)
Q Consensus       417 ~tE~~~~~~~~~~~~~~~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~gw~  495 (510)
                      +||++.+++...... ..++++|+|+||++++|+| ++         ..|||+|+|++++.|||++|+.+.+.| .||||
T Consensus       374 ~TE~~~~~~~~~~~~-~~~~svG~p~pg~~v~i~d-~~---------~~GEi~vrg~~v~~GY~~~p~~t~~~~~~dgw~  442 (614)
T PRK08180        374 MTETAPSATFTTGPL-SRAGNIGLPAPGCEVKLVP-VG---------GKLEVRVKGPNVTPGYWRAPELTAEAFDEEGYY  442 (614)
T ss_pred             ccccCCceEeccccc-CCCCcccCccCCcEEEEec-CC---------CCcEEEEecCccchhhcCChhHhHhhcccCCce
Confidence            999987666543332 3348999999999999998 32         469999999999999999999999999 69999


Q ss_pred             ccCCe-ee----ccCCccC
Q 010455          496 HTGKN-PW----QYTFKKL  509 (510)
Q Consensus       496 ~TGDl-~~----d~dG~~~  509 (510)
                      +|||+ ++    |+||++.
T Consensus       443 ~TGDlg~~~~~~d~~g~l~  461 (614)
T PRK08180        443 RSGDAVRFVDPADPERGLM  461 (614)
T ss_pred             eccceEEecCCcCCCCceE
Confidence            99999 99    4677654

>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=1.4e-54  Score=453.84  Aligned_cols=394  Identities=20%  Similarity=0.201  Sum_probs=310.2

Q ss_pred             CCCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHH
Q 010455           41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME  120 (510)
Q Consensus        41 ~~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~l  120 (510)
                      ...++.+.|.+.++++|+++|+.+.   +.     .++||+||.++++++|+.|.+.   +||+|+++++|++++++++|
T Consensus        17 ~~~~~~~~~~~~~~~~p~~~a~~~~---~~-----~~~Ty~el~~~~~~lA~~L~~~---~gd~Val~~~n~~e~~~~~l   85 (539)
T PRK06334         17 SGKTVLESFLKLCSEMTTATVCWDE---QL-----GKLSYNQVRKAVIALATKVSKY---PDQHIGIMMPASAGAYIAYF   85 (539)
T ss_pred             cCCcHHHHHHHHHHhCCCceEEEeC---CC-----CcccHHHHHHHHHHHHHHHhhc---cCCeEEEEcCCchHHHHHHH
Confidence            3478999999999999999998754   32     3699999999999999999874   89999999999999999999


Q ss_pred             HHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCceeee
Q 010455          121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFS  200 (510)
Q Consensus       121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  200 (510)
                      ||+++|++++|+++..+.+++.++++.++++++|++.+....+.+...........++..++....            ..
T Consensus        86 A~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------------~~  153 (539)
T PRK06334         86 ATLLSGKIPVMINWSQGLREVTACANLVGVTHVLTSKQLMQHLAQTHGEDAEYPFSLIYMEEVRKE------------LS  153 (539)
T ss_pred             HHHhcCCeeEecCcccchHHHHHHHHHcCCCEEEehHHHHHHHhhhhhccccccccEEEEehhhhh------------cc
Confidence            999999999999999999999999999999999998776555433221100011123333221100            00


Q ss_pred             HHHHHHc------CC----CCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEE
Q 010455          201 WEEFLQL------GT----LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYF  270 (510)
Q Consensus       201 ~~~~~~~------~~----~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~  270 (510)
                      +.+....      ..    .........++++++++|||||||.||+|++||+++..+.......+     .+..+|+++
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l  228 (539)
T PRK06334        154 FWEKCRIGIYMSIPFEWLMRWFGVSDKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFF-----SPKEDDVMM  228 (539)
T ss_pred             HHHhhhhhhhhcCCchhhhhcccCCCCCcCCEEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhc-----CCCCCceEE
Confidence            0010000      00    00012234678999999999999999999999999998887766666     778899999


Q ss_pred             EecChHHHHHHHH-HHHHHhcCcEEEEeC--CCHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHH
Q 010455          271 SFLPLAHIYDQII-ETHCIHKGCSIGFWR--GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEF  347 (510)
Q Consensus       271 ~~~pl~h~~g~~~-~l~~l~~G~~~v~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~  347 (510)
                      +.+|++|.+|+.. ++.+++.|+++++..  .++..+++.|+++++|++.++|.++..+++....               
T Consensus       229 ~~~p~~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~---------------  293 (539)
T PRK06334        229 SFLPPFHAYGFNSCTLFPLLSGVPVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKK---------------  293 (539)
T ss_pred             EecchHhhhhhHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHHhhhh---------------
Confidence            9999999999874 677999999998875  3899999999999999999999999998753211               


Q ss_pred             HHHhhhhhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhc-CCCeeeeccccccccceec
Q 010455          348 AYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESCSGCFT  426 (510)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~-g~~l~~~yG~tE~~~~~~~  426 (510)
                                            ...++        ++||.+++||+++++++.+++.+.+ ++.+++.||+||++.+++.
T Consensus       294 ----------------------~~~~~--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~  343 (539)
T PRK06334        294 ----------------------QESCL--------PSLRFVVIGGDAFKDSLYQEALKTFPHIQLRQGYGTTECSPVITI  343 (539)
T ss_pred             ----------------------ccccc--------ccccEEEECCccCCHHHHHHHHHHCCCCeEEecccccccCceEEe
Confidence                                  01112        3899999999999999999999888 6889999999999877766


Q ss_pred             ccCCCCccCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhh--ccCccccCCe-eec
Q 010455          427 SLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI--VDGWFHTGKN-PWQ  503 (510)
Q Consensus       427 ~~~~~~~~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~--~~gw~~TGDl-~~d  503 (510)
                      .........+++|+|++|++++|+|.+++.+++.|  +.|||+|+|++++.|||++++.+....  .+|||+|||+ ++|
T Consensus       344 ~~~~~~~~~~~vG~p~~g~~v~i~d~~~~~~~~~g--~~Gel~v~g~~~~~GY~~~~~~~~~~~~~~~~w~~TGD~g~~d  421 (539)
T PRK06334        344 NTVNSPKHESCVGMPIRGMDVLIVSEETKVPVSSG--ETGLVLTRGTSLFSGYLGEDFGQGFVELGGETWYVTGDLGYVD  421 (539)
T ss_pred             ccCCCCCCCCcCceecCCCEEEEEcCCCCccCCCC--ceEEEEEecCcccccccCCcccccceeeCCceeEECCCEEEEC
Confidence            54443333478999999999999993345556555  899999999999999999998654322  3679999999 999


Q ss_pred             cCCccC
Q 010455          504 YTFKKL  509 (510)
Q Consensus       504 ~dG~~~  509 (510)
                      +||++.
T Consensus       422 ~~G~l~  427 (539)
T PRK06334        422 RHGELF  427 (539)
T ss_pred             CCCeEE
Confidence            999864

>PLN02860 o-succinylbenzoate-CoA ligase

Probab=100.00  E-value=3.9e-54  Score=453.55  Aligned_cols=399  Identities=21%  Similarity=0.178  Sum_probs=312.8

Q ss_pred             CCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHH
Q 010455           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (510)
Q Consensus        42 ~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA  121 (510)
                      +-++.++|++.++++|+++|+++.   +      +.+||+||.++++++|.+|.+.|+++||+|+++++|+++++++++|
T Consensus         6 ~~~~~~~~~~~~~~~p~~~a~~~~---~------~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~v~~~n~~~~~~~~la   76 (563)
T PLN02860          6 QAHICQCLTRLATLRGNAVVTISG---N------RRRTGHEFVDGVLSLAAGLLRLGLRNGDVVAIAALNSDLYLEWLLA   76 (563)
T ss_pred             hhHHHHHHHHHHHhcCCceEEecC---C------ceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHH
Confidence            468999999999999999999754   3      5799999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCceeeeH
Q 010455          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW  201 (510)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  201 (510)
                      |+++|++++||++.++.+++.++++++++++++++++...............+..++..++.......    ........
T Consensus        77 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~  152 (563)
T PLN02860         77 VACAGGIVAPLNYRWSFEEAKSAMLLVRPVMLVTDETCSSWYEELQNDRLPSLMWQVFLESPSSSVFI----FLNSFLTT  152 (563)
T ss_pred             HhhccEEEEeCCcccCHHHHHHHHHhcCceEEEEecccchHHHHHhhccCCceeEEEEecCccccccc----chhhcccc
Confidence            99999999999999999999999999999999998765332222111122333333333322100000    00001111


Q ss_pred             HHHHHcC-CCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHH
Q 010455          202 EEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD  280 (510)
Q Consensus       202 ~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g  280 (510)
                      +++.... ..........++++++++|||||||.||+|.++|++++.+.......+     ++..+|+++..+|++|.++
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~pl~h~~g  227 (563)
T PLN02860        153 EMLKQRALGTTELDYAWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIV-----GYGEDDVYLHTAPLCHIGG  227 (563)
T ss_pred             chhccCccccccccCCCCCCCeEEEEecCCCCCCCceEEeehHHHHHHHHHHHhhc-----CCCCCCEEEEecCchhhcc
Confidence            2221111 001111233578999999999999999999999999998777765555     7888999999999999999


Q ss_pred             HHHHHHHHhcCcEEEEeCC-CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhcccC
Q 010455          281 QIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKG  359 (510)
Q Consensus       281 ~~~~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (510)
                      +...+.++..|+++++.+. ++..+++.++++++|++.++|.++..+++.....                          
T Consensus       228 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~--------------------------  281 (563)
T PLN02860        228 LSSALAMLMVGACHVLLPKFDAKAALQAIKQHNVTSMITVPAMMADLISLTRKS--------------------------  281 (563)
T ss_pred             HHHHHHHHHcCceEEecCCCCHHHHHHHHHHhCCeeEEeChHHHHHHHHhhhhh--------------------------
Confidence            8878889999999988765 9999999999999999999999999987532110                          


Q ss_pred             CCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhc-CCCeeeeccccccccceecccCCC-------
Q 010455          360 MPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESCSGCFTSLADV-------  431 (510)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~-g~~l~~~yG~tE~~~~~~~~~~~~-------  431 (510)
                               ....++        ++||.+++||+++++++.+.+++.| ++.+++.||+||++..++......       
T Consensus       282 ---------~~~~~~--------~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~  344 (563)
T PLN02860        282 ---------MTWKVF--------PSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTEACSSLTFMTLHDPTLESPK  344 (563)
T ss_pred             ---------hccccc--------cceeEEEeCCCcCCHHHHHHHHHhcCCCceecCCCccccCcccccccccccccccch
Confidence                     000111        3899999999999999999999888 789999999999976544322111       


Q ss_pred             ---------------CccCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhh-ccCcc
Q 010455          432 ---------------FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWF  495 (510)
Q Consensus       432 ---------------~~~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~gw~  495 (510)
                                     .....++|+|+|+++++|++ ++       +++.|||+|+|++++.|||++|+.+.+.| .+|||
T Consensus       345 ~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~~-~~-------~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~~g~~  416 (563)
T PLN02860        345 QTLQTVNQTKSSSVHQPQGVCVGKPAPHVELKIGL-DE-------SSRVGRILTRGPHVMLGYWGQNSETASVLSNDGWL  416 (563)
T ss_pred             hhhhhhcccccccccccCCcccCCccCCcEEEEec-CC-------CCceeEEEEecCcccccccCCccccchhccCCCeE
Confidence                           11123789999999999998 54       34899999999999999999999999888 78999


Q ss_pred             ccCCe-eeccCCccC
Q 010455          496 HTGKN-PWQYTFKKL  509 (510)
Q Consensus       496 ~TGDl-~~d~dG~~~  509 (510)
                      +|||+ ++|+||++.
T Consensus       417 ~TGDl~~~d~dG~l~  431 (563)
T PLN02860        417 DTGDIGWIDKAGNLW  431 (563)
T ss_pred             EccceEEEcCCCCEE
Confidence            99999 999999864

>PRK07529 AMP-binding domain protein; Validated

Probab=100.00  E-value=6.3e-54  Score=456.75  Aligned_cols=412  Identities=22%  Similarity=0.275  Sum_probs=321.1

Q ss_pred             CCCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHH
Q 010455           41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME  120 (510)
Q Consensus        41 ~~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~l  120 (510)
                      .+.|+.++|++.++++|+++|+.+... ++..+..+++||+||.++++++|++|+++|+++||+|+++++|++++++++|
T Consensus        23 ~~~t~~~~l~~~a~~~p~~~Al~~~~~-~~~~~~~~~~Ty~eL~~~v~~~A~~L~~~Gi~~gd~V~i~~~n~~e~~~~~l  101 (632)
T PRK07529         23 LPASTYELLSRAAARHPDAPALSFLLD-ADPLDRPETWTYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFALW  101 (632)
T ss_pred             CCCCHHHHHHHHHHHCCCCceEEeecc-cCCCCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence            357899999999999999999987511 1111234689999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCCh-----hhHhhcCccCCCCccEEEEecCCChhh--hhHhh-
Q 010455          121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI-----PSILSCLPRCCLYLKTIVSFANVSSSQ--KKEAE-  192 (510)
Q Consensus       121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~-  192 (510)
                      ||+++| +++|+++.++++++.++++.++++++|++....     ..+..... ....++.++.++......  +.... 
T Consensus       102 A~~~~G-i~~pi~~~~~~~~i~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~  179 (632)
T PRK07529        102 GGEAAG-IANPINPLLEPEQIAELLRAAGAKVLVTLGPFPGTDIWQKVAEVLA-ALPELRTVVEVDLARYLPGPKRLAVP  179 (632)
T ss_pred             HHHHhC-EEEeCCCcCCHHHHHHHHHhcCCcEEEEeCCCCCchHHHHHHHHHh-cCCcceeEEEecCccccccccccccc
Confidence            999999 579999999999999999999999999986542     22222222 224455666554321100  00000 


Q ss_pred             ----hcCceeeeHHHHHHcCCCC--CCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCC
Q 010455          193 ----ELGVSCFSWEEFLQLGTLD--CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEE  266 (510)
Q Consensus       193 ----~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~  266 (510)
                          ........+.+.+......  .......++++++++|||||||.||+|.+||+++++++......+     .+.++
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~-----~~~~~  254 (632)
T PRK07529        180 LIRRKAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLL-----GLGPG  254 (632)
T ss_pred             ccccccccccCCHHHHHhcCCCccccccCCCCcCceEEEEECCCccCcCCEEEEcHHHHHHHHHHHHHhc-----CCCCC
Confidence                0111234565555443211  112234678999999999999999999999999999888776666     67899


Q ss_pred             cEEEEecChHHHHHHHH-HHHHHhcCcEEEEeCC----C---HhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccC
Q 010455          267 DTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG----D---VRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGG  338 (510)
Q Consensus       267 d~~~~~~pl~h~~g~~~-~l~~l~~G~~~v~~~~----~---~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~  338 (510)
                      |++++.+|++|.++... ++.+++.|+++++.+.    +   ..++++.++++++|++.++|+++..+++..        
T Consensus       255 d~~l~~~pl~h~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~--------  326 (632)
T PRK07529        255 DTVFCGLPLFHVNALLVTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQVP--------  326 (632)
T ss_pred             CEEEEecCchhhhHHHHHHHHHHHCCCEEEecCccccCcchHHHHHHHHHHHhCCeEEEeHHHHHHHHHhCc--------
Confidence            99999999999999874 7789999999998752    2   368889999999999999999999986410        


Q ss_pred             hhHHHHHHHHHHhhhhhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeecccc
Q 010455          339 ALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLT  418 (510)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~t  418 (510)
                                                    .+..++        ++||.+++||+++++++.+++++.+|+++++.||+|
T Consensus       327 ------------------------------~~~~~~--------~slr~v~~gg~~l~~~l~~~~~~~~g~~l~~~YG~T  368 (632)
T PRK07529        327 ------------------------------VDGHDI--------SSLRYALCGAAPLPVEVFRRFEAATGVRIVEGYGLT  368 (632)
T ss_pred             ------------------------------ccCCCc--------cceEEEEEcCCCCCHHHHHHHHHHhCCcEeeeeccc
Confidence                                          001112        389999999999999999999999999999999999


Q ss_pred             ccccceecccCCCCccCCccccccCCeEEEEeec-CCC---CcCCCCCCCcceEEEecCCccccccCCchhhhhhh-ccC
Q 010455          419 ESCSGCFTSLADVFNMIGTVGVPMTTVEARLESV-PEM---GYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDG  493 (510)
Q Consensus       419 E~~~~~~~~~~~~~~~~~svG~p~~g~~i~ivd~-~~~---~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~g  493 (510)
                      |++.++.....+.....+++|+|+|+++++|+.. +++   .+++.  |+.|||+|+||+++.||++++. +.+.| .+|
T Consensus       369 E~~~~~~~~~~~~~~~~~svG~~~p~~~v~i~~~d~~g~~~~~~~~--g~~Gel~v~gp~v~~GY~~~~~-~~~~~~~~g  445 (632)
T PRK07529        369 EATCVSSVNPPDGERRIGSVGLRLPYQRVRVVILDDAGRYLRDCAV--DEVGVLCIAGPNVFSGYLEAAH-NKGLWLEDG  445 (632)
T ss_pred             ccCcccccCCccccccCCCcccccCCceEEEEEcCCCCcccccCCC--CCceEEEEECCCccccccCCcc-ccccccCCC
Confidence            9988776665544445589999999999999632 444   44444  4899999999999999998764 45555 789


Q ss_pred             ccccCCe-eeccCCccC
Q 010455          494 WFHTGKN-PWQYTFKKL  509 (510)
Q Consensus       494 w~~TGDl-~~d~dG~~~  509 (510)
                      ||+|||+ ++|+||++.
T Consensus       446 w~~TGDlg~~d~dG~l~  462 (632)
T PRK07529        446 WLNTGDLGRIDADGYFW  462 (632)
T ss_pred             ceEcCcEEEEcCCceEE
Confidence            9999999 999999864

>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase

Probab=100.00  E-value=5.7e-54  Score=457.88  Aligned_cols=410  Identities=19%  Similarity=0.256  Sum_probs=322.5

Q ss_pred             CCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHH
Q 010455           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (510)
Q Consensus        42 ~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA  121 (510)
                      .+...++|+++++.+|+++|+++.   ++..+..+.+||+||.++++++|++|+++|+++||+|+++++|++++++++||
T Consensus        56 ~n~~~~~l~~~~~~~p~~~Al~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA  132 (625)
T TIGR02188        56 LNVSYNCVDRHLEARPDKVAIIWE---GDEPGEVRKITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAMLA  132 (625)
T ss_pred             EEHHHHHHHHhhccCCCCeEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence            356788888899999999999986   43334457899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCCh---------hhHhhcCccCCC-CccEEEEecCCChhhhhHh
Q 010455          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI---------PSILSCLPRCCL-YLKTIVSFANVSSSQKKEA  191 (510)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~  191 (510)
                      |+++|++++|+++.++.+++..++++++++++|+++...         ..+.+..... + .++.++++........   
T Consensus       133 ~~~~Gav~v~i~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---  208 (625)
T TIGR02188       133 CARIGAIHSVVFGGFSAEALADRINDAGAKLVITADEGLRGGKVIPLKAIVDEALEKC-PVSVEHVLVVRRTGNPVP---  208 (625)
T ss_pred             HHHhCCEEeccCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHHhC-CCCccEEEEEcCCCCCcC---
Confidence            999999999999999999999999999999999987532         2222222211 2 3455555543221100   


Q ss_pred             hhcCceeeeHHHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhh-hhhhhhccccCCCCcEEE
Q 010455          192 EELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSV-DQMFVVTGKVCSEEDTYF  270 (510)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~-~~~~~~~~~~~~~~d~~~  270 (510)
                       ........++++..............++++++|+|||||||.||||+++|.+++...... ...+     ++.++|+++
T Consensus       209 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~-----~~~~~d~~~  282 (625)
T TIGR02188       209 -WVEGRDVWWHDLMAKASAYCEPEPMDSEDPLFILYTSGSTGKPKGVLHTTGGYLLYAAMTMKYVF-----DIKDGDIFW  282 (625)
T ss_pred             -ccccccccHHHHHhhcCCCCCceecCCCCceEEEecCCCCCCCCeEEECccHhHHHHHHHHHhcc-----CCCCCcEEE
Confidence             000112345555544322223334567899999999999999999999999987655432 2233     678899999


Q ss_pred             EecChHHHHHHHH-HHHHHhcCcEEEEeCC-----CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHH
Q 010455          271 SFLPLAHIYDQII-ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKL  344 (510)
Q Consensus       271 ~~~pl~h~~g~~~-~l~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~  344 (510)
                      +..|++|..+... ++.+|..|+++++.++     ++..+++.++++++|++.++|++++.|.+...             
T Consensus       283 ~~~~~~~~~g~~~~~~~~l~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~-------------  349 (625)
T TIGR02188       283 CTADVGWITGHSYIVYGPLANGATTVMFEGTPTYPDPGRFWEIIEKHKVTIFYTAPTAIRALMRLGD-------------  349 (625)
T ss_pred             ECCCchhhhccHHHHHHHHHcCCeEEEECCCCCCCChhHHHHHHHHhCCeEEEeCHHHHHHHHhcCC-------------
Confidence            9999999988764 7789999999998753     78999999999999999999999998865210             


Q ss_pred             HHHHHHhhhhhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcC---CCeeeeccccccc
Q 010455          345 FEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG---APLTQGYGLTESC  421 (510)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g---~~l~~~yG~tE~~  421 (510)
                                            ...+..++        ++||.+++||+++++++.+++.+.++   +++++.||+||++
T Consensus       350 ----------------------~~~~~~~l--------~~lr~i~~~G~~l~~~~~~~~~~~~~~~~~~i~~~yG~TE~~  399 (625)
T TIGR02188       350 ----------------------EWVKKHDL--------SSLRLLGSVGEPINPEAWMWYYKVVGKERCPIVDTWWQTETG  399 (625)
T ss_pred             ----------------------cccccCCc--------cceeEEEEecCCCCHHHHHHHHHHcCCCCCceEecccccccC
Confidence                                  01112223        38999999999999999999998875   7899999999998


Q ss_pred             cceecccCC-CCccCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEec--CCccccccCCchhhhhhh---ccCcc
Q 010455          422 SGCFTSLAD-VFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRG--NTLFSGYYKRPDLTEEVI---VDGWF  495 (510)
Q Consensus       422 ~~~~~~~~~-~~~~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g--~~v~~gY~~~~~~~~~~~---~~gw~  495 (510)
                      ..++..... ....++++|+|++|++++|+| ++|++++ +.++.|||+|+|  |+++.|||++++.+.+.+   .+|||
T Consensus       400 ~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d-~~g~~~~-~~g~~GeL~v~~p~p~~~~gy~~~~~~~~~~~~~~~~g~~  477 (625)
T TIGR02188       400 GIMITPLPGATPTKPGSATLPFFGIEPAVVD-EEGNPVE-GPGEGGYLVIKQPWPGMLRTIYGDHERFVDTYFSPFPGYY  477 (625)
T ss_pred             CceeecCCCCCCcCCCcccCCcCCceEEEEC-CCCCCCC-CCCCeEEEEEccCCCcccccccCChHHHHHHHhccCCCEE
Confidence            776554332 123458999999999999999 8888776 134899999999  689999999998887766   48999


Q ss_pred             ccCCe-eeccCCccC
Q 010455          496 HTGKN-PWQYTFKKL  509 (510)
Q Consensus       496 ~TGDl-~~d~dG~~~  509 (510)
                      +|||+ ++|+||++.
T Consensus       478 ~TGDl~~~d~dG~l~  492 (625)
T TIGR02188       478 FTGDGARRDKDGYIW  492 (625)
T ss_pred             ECCceEEEcCCCcEE
Confidence            99999 999999864

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.

>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]

Probab=100.00  E-value=7.2e-55  Score=443.02  Aligned_cols=389  Identities=27%  Similarity=0.421  Sum_probs=303.3

Q ss_pred             HHHHHhhCCCCcceee-eeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHHHhcCC
Q 010455           49 FCDSAKRIPNNQMLGG-RKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAI  127 (510)
Q Consensus        49 l~~~a~~~p~~~a~~~-~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA~~~~G~  127 (510)
                      |+++|+++||++|+++ .   .      +.+||+||.++++++|..|+++|+++|++|+++++|+++++++++||+++|+
T Consensus         1 f~~~a~~~pd~~a~~~~~---~------~~~Ty~~l~~~v~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~~A~~~~G~   71 (417)
T PF00501_consen    1 FERQAQRYPDRIALIDDE---G------RSLTYKQLYERVRKLAAALRKLGVKKGDRVAILLPNSIEFVVAFLACLRAGA   71 (417)
T ss_dssp             HHHHHHHSTTSEEEEETT---T------EEEEHHHHHHHHHHHHHHHHHTTSSTTSEEEEEESSSHHHHHHHHHHHHTT-
T ss_pred             ChhHHhhCCCceEEEECC---C------EEEEHHHHHHHHHHHhhHHHHhCCCccccccccCCccceeeeeecccccccc
Confidence            6899999999999987 3   2      7899999999999999999999999999999999999999999999999999


Q ss_pred             eEEEecCCCCHHHHHHHHHhcCccEEEE----cCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCceeeeHHH
Q 010455          128 TYVPLYDTLGANAVEFIINHAEVSIAFV----QENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEE  203 (510)
Q Consensus       128 ~~v~l~~~~~~~~l~~~l~~~~~~~vi~----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (510)
                      +++|++|.++.+++.++++.++++++|+    +......+..... .......++.++......             .+.
T Consensus        72 ~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-------------~~~  137 (417)
T PF00501_consen   72 IPVPLDPSLSEDELRHILRQSGPKVIITSEAVDSEPLKKLKSIFK-QEDPSSSIIILDRDDLPK-------------KEA  137 (417)
T ss_dssp             EEEEEETTSSHHHHHHHHHHHTESEEEECHHHSCHHHHHHHHHHT-TSTTTEEEEEESHSSCTT-------------CHH
T ss_pred             cccccccccccccccccccccceeEEEEeccccccccccchhhhc-cccccccccccccccccc-------------ccc
Confidence            9999999999999999999999999997    2222222222221 112334455554332110             011


Q ss_pred             HHHcC-CCCCCCCC-CCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHH
Q 010455          204 FLQLG-TLDCELPP-KKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ  281 (510)
Q Consensus       204 ~~~~~-~~~~~~~~-~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~  281 (510)
                      +.... ..... .. ..++++++++|||||||.||+|.++|+++++.+..+.  +... .+.+  |++++.+|++|.+|+
T Consensus       138 ~~~~~~~~~~~-~~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~--~~~~-~~~~--d~~l~~~p~~~~~g~  211 (417)
T PF00501_consen  138 LKSASLSDEPQ-SPEDSPDDPAFILFTSGTTGKPKGVVLTHRNLLAQARALA--LPEY-FGLG--DRILSFLPLSHIFGL  211 (417)
T ss_dssp             HHHHHHCHCSH-STTHTTTSEEEEEEESSSSSSEEEEEEEHHHHHHHHHHHH--HHHT-TTTT--TEEEESS-TTSHHHH
T ss_pred             ccccccccccc-cCCCCccceeEeeccccccccccccccccccccccccccc--cccc-cccC--ceEEeeccccccccc
Confidence            11110 00000 00 0568999999999999999999999999999988865  1111 1223  699999999999999


Q ss_pred             -HHHHHHHhcCcEEEEeCC----CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhc
Q 010455          282 -IIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNM  356 (510)
Q Consensus       282 -~~~l~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (510)
                       ..++.+++.|+++++.+.    ++..+++.++++++|+++++|.++..+++..+.. .                     
T Consensus       212 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~-~---------------------  269 (417)
T PF00501_consen  212 ISALLAALFSGATLVLPSPFDLFDPESLLELISRYKPTILFAVPSMLEALLQSPEEK-T---------------------  269 (417)
T ss_dssp             HHHHHHHHHCTSEEEEESSHHHHHHHHHHHHHHHHTESEEEEEHHHHHHHHHHHHTT-H---------------------
T ss_pred             cccccccccccccccccccccccccccchhccccccccccccccccccccccccccc-c---------------------
Confidence             578999999999999986    2477899999999999999999999987621110 0                     


Q ss_pred             ccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCC-Ceeeeccccccccceeccc-CCCCcc
Q 010455          357 KKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGA-PLTQGYGLTESCSGCFTSL-ADVFNM  434 (510)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~-~l~~~yG~tE~~~~~~~~~-~~~~~~  434 (510)
                                 .....++        ++||.+++||+++++++.+++++.++. .|++.||+||++.+++... ......
T Consensus       270 -----------~~~~~~l--------~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~  330 (417)
T PF00501_consen  270 -----------KISKKDL--------SSLRTVISGGEPLPPDLLRRLRKAFGNAPIINLYGSTETGSIATIRPPEDDIEK  330 (417)
T ss_dssp             -----------HGTTTTG--------TT-SEEEEESST-CHHHHHHHHHHHTTSEEEEEEEEGGGSSEEEEEETTTHHSS
T ss_pred             -----------ccccccc--------ccccccccccccCChhhccccccccccccceecccccccceeeecccccccccc
Confidence                       0000122        279999999999999999999999987 8999999999999887653 233334


Q ss_pred             CCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhhc-cCccccCCe-eeccCCccC
Q 010455          435 IGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV-DGWFHTGKN-PWQYTFKKL  509 (510)
Q Consensus       435 ~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~-~gw~~TGDl-~~d~dG~~~  509 (510)
                      .+++|.|+|+++++|+|.+++++++.+  +.|||+|+||.++.||+++|+.+.+.|. +|||+|||+ ++|+||++.
T Consensus       331 ~~~~G~~~~~~~~~ivd~~~~~~~~~g--~~Gei~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~g~~d~~G~~~  405 (417)
T PF00501_consen  331 PGSVGKPLPGVEVKIVDPNTGEPLPPG--EPGEIVIRGPNVFSGYYNDPELTAEAFIDDGWYRTGDLGRLDEDGYLY  405 (417)
T ss_dssp             TTSEBEESTTEEEEEECTTTSSBESTT--SEEEEEEESTTSBSEETTBHHHHHHHEETTSEEEEEEEEEEETTSEEE
T ss_pred             ccccccccccccccccccccccccccc--ccccccccCCccceeeeccccccccccccccceecceEEEECCCCeEE
Confidence            488999999999999993337777666  8999999999999999999999999994 589999999 999999865

This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....

>PRK07788 acyl-CoA synthetase; Validated

Probab=100.00  E-value=6.5e-54  Score=451.00  Aligned_cols=394  Identities=19%  Similarity=0.186  Sum_probs=322.0

Q ss_pred             CCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHH
Q 010455           43 ESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC  122 (510)
Q Consensus        43 ~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA~  122 (510)
                      .++.++|++.++++|+++|+++.   +      +.+||+||.++++++|++|.+.|+++||+|+++++|++++++++|||
T Consensus        49 ~~~~~~~~~~a~~~pd~~Al~~~---~------~~~Ty~el~~~~~~la~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~  119 (549)
T PRK07788         49 GPFAGLVAHAARRAPDRAALIDE---R------GTLTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAA  119 (549)
T ss_pred             chHHHHHHHHHHHCCCceEEEEC---C------CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence            48999999999999999999864   3      47999999999999999999999999999999999999999999999


Q ss_pred             HhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCceeeeHH
Q 010455          123 NSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWE  202 (510)
Q Consensus       123 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  202 (510)
                      +++|++++|+++.++.+++.++++.++++++|++++....+.+.. .....+..++...+...       .....+..++
T Consensus       120 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-------~~~~~~~~~~  191 (549)
T PRK07788        120 GKVGARIILLNTGFSGPQLAEVAAREGVKALVYDDEFTDLLSALP-PDLGRLRAWGGNPDDDE-------PSGSTDETLD  191 (549)
T ss_pred             HhcCCEEEEeCCCCCHHHHHHHHHhcCCcEEEECchhHHHHHhhc-cccccceEEEEecCccc-------cCCcCcccHH
Confidence            999999999999999999999999999999999987766554432 12222333322221110       0012345667


Q ss_pred             HHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHH
Q 010455          203 EFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQI  282 (510)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~  282 (510)
                      ++.......  ..+...+++++++|||||||.||+|.++|+++.+.+......+     .+..+|+++...|++|.+|+.
T Consensus       192 ~~~~~~~~~--~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~d~~~~~~p~~~~~g~~  264 (549)
T PRK07788        192 DLIAGSSTA--PLPKPPKPGGIVILTSGTTGTPKGAPRPEPSPLAPLAGLLSRV-----PFRAGETTLLPAPMFHATGWA  264 (549)
T ss_pred             HHhcCCCCC--CCCCCCCCCcEEEECCCCCCCCCEEeccCccHHHHHHHHHhhC-----CCCcCCeEEEccchHHHHHHH
Confidence            666543211  1223456789999999999999999999999999888776666     778899999999999999998


Q ss_pred             HHHHHHhcCcEEEEeCC-CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhcccCCC
Q 010455          283 IETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMP  361 (510)
Q Consensus       283 ~~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (510)
                      ..+.++..|+++++... ++..+++.++++++|++.++|+++..+++.....                            
T Consensus       265 ~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~----------------------------  316 (549)
T PRK07788        265 HLTLAMALGSTVVLRRRFDPEATLEDIAKHKATALVVVPVMLSRILDLGPEV----------------------------  316 (549)
T ss_pred             HHHHHHHhCCEEEECCCCCHHHHHHHHHHhCCcEEEEHHHHHHHHHhCcccc----------------------------
Confidence            77889999999988764 9999999999999999999999999987522110                            


Q ss_pred             CCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeeccccccccceecccCCCCccCCccccc
Q 010455          362 QNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVP  441 (510)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~~~~~~~~~~~~~~svG~p  441 (510)
                             ....++        ++||.+++||+++++++.+++.+.++..+++.||+||++.++.....+....++++|+|
T Consensus       317 -------~~~~~~--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~vG~~  381 (549)
T PRK07788        317 -------LAKYDT--------SSLKIIFVSGSALSPELATRALEAFGPVLYNLYGSTEVAFATIATPEDLAEAPGTVGRP  381 (549)
T ss_pred             -------cCCCCC--------CceeEEEEeCCCCCHHHHHHHHHHhCccceeccCcchhchhhccChhhhhhcCCCcccC
Confidence                   001111        38999999999999999999999899999999999999876554433333345789999


Q ss_pred             cCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhhccCccccCCe-eeccCCccC
Q 010455          442 MTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGKN-PWQYTFKKL  509 (510)
Q Consensus       442 ~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDl-~~d~dG~~~  509 (510)
                      +++++++|+| +++.+++.|  +.|||+|+|+.++.||+++++.   ...+|||+|||+ ++|+||++.
T Consensus       382 ~~~~~~~i~d-~~~~~~~~g--~~Gel~v~g~~~~~gY~~~~~~---~~~~g~~~TGDl~~~~~~g~l~  444 (549)
T PRK07788        382 PKGVTVKILD-ENGNEVPRG--VVGRIFVGNGFPFEGYTDGRDK---QIIDGLLSSGDVGYFDEDGLLF  444 (549)
T ss_pred             CCCcEEEEEC-CCcCCCCCC--CeEEEEEeCCCccccccCCCcc---cccCCceecCceEEEcCCCCEE
Confidence            9999999999 888877775  8999999999999999998865   235899999999 999999864

>PRK12582 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.4e-53  Score=452.30  Aligned_cols=397  Identities=20%  Similarity=0.332  Sum_probs=305.9

Q ss_pred             CCCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHH
Q 010455           41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME  120 (510)
Q Consensus        41 ~~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~l  120 (510)
                      ...++.++|+++++++|+++|+++.   +...+.++.+||+||.++++++|++|++.|+++||+|+++++|++++++++|
T Consensus        47 ~~~~l~~~l~~~a~~~pd~~a~~~~---~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l  123 (624)
T PRK12582         47 YPRSIPHLLAKWAAEAPDRPWLAQR---EPGHGQWRKVTYGEAKRAVDALAQALLDLGLDPGRPVMILSGNSIEHALMTL  123 (624)
T ss_pred             cccCHHHHHHHHHHHCCCchheecc---cCCCCceEEeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHH
Confidence            4678999999999999999999865   4323456789999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEEecCCCCH-----HHHHHHHHhcCccEEEEcCCC-hhhHhhcCccCCCCccEEEEecCCChhhhhHhhhc
Q 010455          121 ACNSQAITYVPLYDTLGA-----NAVEFIINHAEVSIAFVQENK-IPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEEL  194 (510)
Q Consensus       121 A~~~~G~~~v~l~~~~~~-----~~l~~~l~~~~~~~vi~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  194 (510)
                      ||+++|++++|++|.++.     +++.++++.++++++|+++.. ...........  .. .++.++....         
T Consensus       124 A~~~~G~v~vpl~p~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~--~~-~~i~~~~~~~---------  191 (624)
T PRK12582        124 AAMQAGVPAAPVSPAYSLMSHDHAKLKHLFDLVKPRVVFAQSGAPFARALAALDLL--DV-TVVHVTGPGE---------  191 (624)
T ss_pred             HHHHcCCeEeeccCccccccCCHHHHHHHHHhcCCcEEEecCHHHHHHHHHhhhhc--Cc-eEEEEcCCCc---------
Confidence            999999999999999875     899999999999999998642 12222222111  12 2333322110         


Q ss_pred             CceeeeHHHHHHcCCCC---CCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCC---CCcE
Q 010455          195 GVSCFSWEEFLQLGTLD---CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCS---EEDT  268 (510)
Q Consensus       195 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~---~~d~  268 (510)
                      ......++++.......   .......++++++|+|||||||.||||++||+++.+.+......+     ...   ..++
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~~~~~~  266 (624)
T PRK12582        192 GIASIAFADLAATPPTAAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQLR-----PREPDPPPPV  266 (624)
T ss_pred             ccccccHHHHhhcCCcchhhhhhccCCCCceEEEEEcCCCCCCCceEEeeHHHHHHHHHHHHHhc-----cccCCCCCce
Confidence            00123455554332111   111234578999999999999999999999999998877654433     222   3589


Q ss_pred             EEEecChHHHHHHHH-HHHHHhcCcEEEEeCC--C---HhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHH
Q 010455          269 YFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG--D---VRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSK  342 (510)
Q Consensus       269 ~~~~~pl~h~~g~~~-~l~~l~~G~~~v~~~~--~---~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~  342 (510)
                      +++++|++|.+|+.. ++.+++.|+++++.+.  +   ...+++.++++++|+++++|.++..|++.+..          
T Consensus       267 ~l~~lPl~h~~g~~~~~~~~l~~G~tvvl~~~~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~----------  336 (624)
T PRK12582        267 SLDWMPWNHTMGGNANFNGLLWGGGTLYIDDGKPLPGMFEETIRNLREISPTVYGNVPAGYAMLAEAMEK----------  336 (624)
T ss_pred             EEEechHHHHHhHHHHHHHHHhCceEEEEcCCCcccchHHHHHHHHHhcCCeEEeccCHHHHHHHHHHhh----------
Confidence            999999999999875 5678999999998653  2   34567788999999999999999988753321          


Q ss_pred             HHHHHHHHhhhhhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHh----cC--CCeeeecc
Q 010455          343 KLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVT----SG--APLTQGYG  416 (510)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~----~g--~~l~~~yG  416 (510)
                                             .+.....+++        +||.+++||+++++++.+++.+.    +|  +.+++.||
T Consensus       337 -----------------------~~~~~~~~~~--------slr~i~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~YG  385 (624)
T PRK12582        337 -----------------------DDALRRSFFK--------NLRLMAYGGATLSDDLYERMQALAVRTTGHRIPFYTGYG  385 (624)
T ss_pred             -----------------------CHHHHHHHhh--------heeEEEecCCCCCHHHHHHHHHHHHhhcCCCceEEeccc
Confidence                                   1122223333        89999999999999999999875    23  67999999


Q ss_pred             ccccccceecccCCCCccCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhh-ccCcc
Q 010455          417 LTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWF  495 (510)
Q Consensus       417 ~tE~~~~~~~~~~~~~~~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~gw~  495 (510)
                      +||++.++....... ...+++|+|+||++++|++          .|+.|||+|+|++++.|||++|+.+.+.| .||||
T Consensus       386 ~TE~~~~~~~~~~~~-~~~~svG~p~pg~~v~i~~----------~G~~GEl~vrg~~v~~GY~~~p~~t~~~f~~dgw~  454 (624)
T PRK12582        386 ATETAPTTTGTHWDT-ERVGLIGLPLPGVELKLAP----------VGDKYEVRVKGPNVTPGYHKDPELTAAAFDEEGFY  454 (624)
T ss_pred             cccccceeecccCCC-CCCCCCCcCCCCcEEEEcc----------CCCceEEEEECCcccccccCCccchhhhcCccCCc
Confidence            999987665333222 3348999999999999975          23789999999999999999999999999 79999


Q ss_pred             ccCCe-ee-c---cCCccC
Q 010455          496 HTGKN-PW-Q---YTFKKL  509 (510)
Q Consensus       496 ~TGDl-~~-d---~dG~~~  509 (510)
                      +|||+ ++ |   +||+++
T Consensus       455 ~TGDlg~~~d~~~~~g~l~  473 (624)
T PRK12582        455 RLGDAARFVDPDDPEKGLI  473 (624)
T ss_pred             cccceEEecCCcCCCCceE
Confidence            99999 98 4   456654

>PRK04319 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.4e-53  Score=448.38  Aligned_cols=401  Identities=16%  Similarity=0.229  Sum_probs=327.3

Q ss_pred             CCCHHHHHHHHHh-hCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHH
Q 010455           42 LESPWQFFCDSAK-RIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME  120 (510)
Q Consensus        42 ~~sl~~~l~~~a~-~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~l  120 (510)
                      .+.+.++++++++ .+|+++|+.+.   ++.  ..+.+||+||.++++++|.+|.+.|+++||+|+++++|++++++++|
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~a~~~~---~~~--~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~l  116 (570)
T PRK04319         42 VNIAYEAIDRHADGGRKDKVALRYL---DAS--RKEKYTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFALL  116 (570)
T ss_pred             eeHHHHHHHHhhccCCCCceEEEEE---CCC--CceeecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHH
Confidence            4556788988887 47999999876   432  23689999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCceeee
Q 010455          121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFS  200 (510)
Q Consensus       121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  200 (510)
                      ||+++|++++|+++..+.+++.++++.++++.+|+++........   ...+..+.++..++...        .......
T Consensus       117 a~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--------~~~~~~~  185 (570)
T PRK04319        117 GALKNGAIVGPLFEAFMEEAVRDRLEDSEAKVLITTPALLERKPA---DDLPSLKHVLLVGEDVE--------EGPGTLD  185 (570)
T ss_pred             HHHHcCcEEcccccccCHHHHHHHHHccCCcEEEEChhhhhccch---hcCCCceEEEEECCCcC--------CCcCccC
Confidence            999999999999999999999999999999999998776543321   12234455555543221        0112335


Q ss_pred             HHHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHH
Q 010455          201 WEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD  280 (510)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g  280 (510)
                      +.+++.............++++++++|||||||.||+|.++|++++..+......+     .+.++|++++..|++|..|
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~-----~~~~~d~~~~~~~~~~~~g  260 (570)
T PRK04319        186 FNALMEQASDEFDIEWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYVL-----DLHEDDVYWCTADPGWVTG  260 (570)
T ss_pred             HHHHHhhcCCcCCccccCCCCCEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhc-----CCCCCceEEecCChHHhhC
Confidence            55555433222223344678999999999999999999999999998887776666     7888999999999999988


Q ss_pred             HHH-HHHHHhcCcEEEEeCC--CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhcc
Q 010455          281 QII-ETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMK  357 (510)
Q Consensus       281 ~~~-~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (510)
                      ... ++.+++.|+++++...  ++..+++.++++++|+++++|.+++.+++...                          
T Consensus       261 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--------------------------  314 (570)
T PRK04319        261 TSYGIFAPWLNGATNVIDGGRFSPERWYRILEDYKVTVWYTAPTAIRMLMGAGD--------------------------  314 (570)
T ss_pred             chHHHHHHHhcCceEEEECCCCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcCC--------------------------
Confidence            764 7789999999998753  89999999999999999999999999864210                          


Q ss_pred             cCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeeccccccccceecccCCCCccCCc
Q 010455          358 KGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGT  437 (510)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~~~~~~~~~~~~~~s  437 (510)
                               ...+..++        ++||.+++||+++++++.+++++.+|.++++.||+||++..++.........+++
T Consensus       315 ---------~~~~~~~~--------~~lr~~~~gG~~l~~~~~~~~~~~~g~~i~~~YG~tE~~~~~~~~~~~~~~~~~~  377 (570)
T PRK04319        315 ---------DLVKKYDL--------SSLRHILSVGEPLNPEVVRWGMKVFGLPIHDNWWMTETGGIMIANYPAMDIKPGS  377 (570)
T ss_pred             ---------cccccCCc--------ccceEEEEcccCCCHHHHHHHHHHhCCCeEeceeecccCCEEEecCCCCCCCCCc
Confidence                     00111122        2899999999999999999999989999999999999987766544433334589


Q ss_pred             cccccCCeEEEEeecCCCCcCCCCCCCcceEEEec--CCccccccCCchhhhhhhccCccccCCe-eeccCCccC
Q 010455          438 VGVPMTTVEARLESVPEMGYDALSSVPRGEICLRG--NTLFSGYYKRPDLTEEVIVDGWFHTGKN-PWQYTFKKL  509 (510)
Q Consensus       438 vG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g--~~v~~gY~~~~~~~~~~~~~gw~~TGDl-~~d~dG~~~  509 (510)
                      +|+|+||++++|+| +++.+++.|  +.|||+++|  ++++.||+++++.+.+.|.+|||+|||+ ++|+||++.
T Consensus       378 ~G~p~~g~~~~i~d-~~~~~~~~g--~~Gel~i~~~~~~~~~GY~~~~~~~~~~~~~gw~~TGDl~~~~~~g~l~  449 (570)
T PRK04319        378 MGKPLPGIEAAIVD-DQGNELPPN--RMGNLAIKKGWPSMMRGIWNNPEKYESYFAGDWYVSGDSAYMDEDGYFW  449 (570)
T ss_pred             CcCCCCCCEEEEEC-CCCCCCCCC--CceEEEEcCCCChHHhHhcCCHHHhhhhhcCCceEeCcEEEECCCeeEE
Confidence            99999999999999 888877655  899999997  8999999999999999999999999999 999999764

>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=8.9e-55  Score=400.41  Aligned_cols=395  Identities=19%  Similarity=0.235  Sum_probs=339.3

Q ss_pred             CCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHH
Q 010455           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (510)
Q Consensus        42 ~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA  121 (510)
                      .+++.++|..+|+++||++|+++.   +      +.+||+||.++++++|.+|+++|+++||+|.+.++|..++++++||
T Consensus        27 d~~l~d~L~~~A~~~pdriAv~d~---~------~~~sY~eLdqr~d~LAa~l~~lGi~~Gd~vlvQLpN~~ef~~~~FA   97 (542)
T COG1021          27 DRTLTDILTDHAARYPDRIAVIDG---E------RRLSYAELDQRADRLAAGLRRLGIKPGDTVLVQLPNVAEFYITFFA   97 (542)
T ss_pred             CCcHHHHHHHHHhhcCCceEEecC---c------ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCchHHHHHHHHH
Confidence            589999999999999999999864   3      5699999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCCh----hhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCce
Q 010455          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI----PSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS  197 (510)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  197 (510)
                      ++++|+.+|.--|.....+|.+....++++.+|++....    ..+.+......+.++.+++.++....           
T Consensus        98 LlrlGv~PVlALpsHr~~Ei~~f~~~~e~~~~i~~~~~~gFd~~~~ar~~~a~~~tlr~v~v~ge~~~~-----------  166 (542)
T COG1021          98 LLRLGVAPVLALPSHRASELGAFASQIEAALLIVARQHSGFDYRPFARELVAKHPTLRHVIVAGEAEHP-----------  166 (542)
T ss_pred             HHHcCcchhhccchhhHHHHHHHHHhhcchheeechhhcccCcHHHHHHHHhhCCcceEEEEccCCCCc-----------
Confidence            999999999999999999999999999999999987432    22333333445788899888665421           


Q ss_pred             eeeHHHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHH
Q 010455          198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAH  277 (510)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h  277 (510)
                      ...+..+........+..+.++++++++..+.||||.||.+..||.....+++...+.|     +++..+++++.+|..|
T Consensus       167 ~~~~~~~~~~a~~~~~a~~~~~~~vA~fqLSGGTTGtPKLIPRtH~DY~Ysv~aSaEiC-----~~~~~tvyL~~LP~AH  241 (542)
T COG1021         167 SVLEAALCHPAGLFTPAPPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEIC-----GFDQQTVYLCALPAAH  241 (542)
T ss_pred             chhhhhhhCccccCCcCCCCCCCceEEEEecCCCCCCCccccccccceeeeeeehhhhh-----CcCccceEEEeccccc
Confidence            11122222222444456777889999999999999999999999999999999999999     9999999999999999


Q ss_pred             HHHHHH--HHHHHhcCcEEEEeCC-CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhh
Q 010455          278 IYDQII--ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLG  354 (510)
Q Consensus       278 ~~g~~~--~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (510)
                      .+.+.+  ++..++.|+++|+.+. +|..-+..|+++++|+...+|.+...+++..                        
T Consensus       242 NfplssPG~LGv~~agG~VVla~~psp~~~F~lIerh~Vt~tALVPpla~LWlqa~------------------------  297 (542)
T COG1021         242 NFPLSSPGALGVFLAGGTVVLAPDPSPELCFPLIERHGVTVTALVPPLASLWLQAA------------------------  297 (542)
T ss_pred             CCCCCCcchhheeeeccEEEECCCCCHHHHHHHHHHhccceEEeccHHHHHHHHhh------------------------
Confidence            998874  8889999999999876 9999999999999999999999999887632                        


Q ss_pred             hcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeeccccccccceecccCCCCc-
Q 010455          355 NMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFN-  433 (510)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~~~~~~~~~~~-  433 (510)
                                   .+...+++        |||.+-.||+.+++++.+++...+||.+.+.|||.|.- ++.....+..+ 
T Consensus       298 -------------e~~~~~Ls--------SLrllQVGGarl~~~~Arrv~~~lgC~LQQVFGMAEGL-vnyTRLDDp~E~  355 (542)
T COG1021         298 -------------EWERADLS--------SLRLLQVGGARLSATLARRVPAVLGCQLQQVFGMAEGL-VNYTRLDDPPEI  355 (542)
T ss_pred             -------------hcccCCch--------heeEEeecCcccCHHHHhhchhhhCchHHHHhhhhhhh-hcccccCCchHh
Confidence                         23444555        99999999999999999999999999999999999954 44444444432 


Q ss_pred             cCCcccccc-CCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhh-ccCccccCCe-eeccCCccCC
Q 010455          434 MIGTVGVPM-TTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGKN-PWQYTFKKLM  510 (510)
Q Consensus       434 ~~~svG~p~-~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~gw~~TGDl-~~d~dG~~~~  510 (510)
                      -.-+-|+|+ |.-+++|+| .+|+++..|  |+|+|.++||..++||++.|+.+.++| .+|||+|||+ ++|+||++.|
T Consensus       356 i~~TQGrPlsP~DEvrvvD-~dg~pv~pG--E~G~LltRGPYTirGYyrap~HNa~aF~a~GFYrsGD~V~~~~dGyl~V  432 (542)
T COG1021         356 IIHTQGRPLSPDDEVRVVD-ADGNPVAPG--EVGELLTRGPYTIRGYYRAPEHNARAFDADGFYRSGDLVRRDPDGYLVV  432 (542)
T ss_pred             eeecCCCcCCCcceeEEec-CCCCCCCCC--CcceeeecCCeeeeeeccCchhhhhccCcCCceecCceeEecCCceEEE
Confidence            235679997 889999999 999988777  999999999999999999999999999 9999999999 9999999764

>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed

Probab=100.00  E-value=1.3e-52  Score=440.82  Aligned_cols=397  Identities=22%  Similarity=0.253  Sum_probs=322.2

Q ss_pred             CCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHH
Q 010455           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (510)
Q Consensus        42 ~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA  121 (510)
                      ..++.++|++.++.+|+++|+++.   +...+.++.+||+||.++++++|++|.+.|+++|++|+++++|++++++++||
T Consensus        23 ~~~l~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~Val~~~n~~e~~~~~la   99 (547)
T PRK13295         23 DRTINDDLDACVASCPDKTAVTAV---RLGTGAPRRFTYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEFTVLYLA   99 (547)
T ss_pred             CCCHHHHHHHHHHHCCCceEEEec---CCCccccceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHH
Confidence            468999999999999999999876   43334457899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCCh-----hhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCc
Q 010455          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI-----PSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGV  196 (510)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  196 (510)
                      |+++|++++|++|..+.+++.++++.++++++|+++...     +.+.+. ......+..++.++...            
T Consensus       100 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------------  166 (547)
T PRK13295        100 CSRIGAVLNPLMPIFRERELSFMLKHAESKVLVVPKTFRGFDHAAMARRL-RPELPALRHVVVVGGDG------------  166 (547)
T ss_pred             HHhcCcEEeccccccCHHHHHHHHHhcCceEEEEeccccCcchHHHHHHH-hhhCCCcceEEEecCCC------------
Confidence            999999999999999999999999999999999987642     111111 11223445555544321            


Q ss_pred             eeeeHHHHHHcC-C-------CCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcE
Q 010455          197 SCFSWEEFLQLG-T-------LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDT  268 (510)
Q Consensus       197 ~~~~~~~~~~~~-~-------~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~  268 (510)
                       ..++.++.... .       .........++++++++|||||||.||+|.++|++++..+......+     ++..+|+
T Consensus       167 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~  240 (547)
T PRK13295        167 -ADSFEALLITPAWEQEPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERL-----GLGADDV  240 (547)
T ss_pred             -ccCHHHHhhCCccccccccccccccCCCCCcceeEEEeCCCCCCCCCEEEeccHHHHHHHHHHHHHh-----CCCCCCe
Confidence             11233333211 0       00111234568999999999999999999999999999888876666     7889999


Q ss_pred             EEEecChHHHHHHHH-HHHHHhcCcEEEEeCC-CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHH
Q 010455          269 YFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFE  346 (510)
Q Consensus       269 ~~~~~pl~h~~g~~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~  346 (510)
                      +++.+|++|..++.. ++.+++.|+++++.+. ++..+++.++++++|++.++|.++..++.....              
T Consensus       241 ~l~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~--------------  306 (547)
T PRK13295        241 ILMASPMAHQTGFMYGLMMPVMLGATAVLQDIWDPARAAELIRTEGVTFTMASTPFLTDLTRAVKE--------------  306 (547)
T ss_pred             EEEecCchhhhhHHHHHHHHHHcCCeEEeCCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhcccc--------------
Confidence            999999999998765 7789999999998775 899999999999999999999999988652110              


Q ss_pred             HHHHhhhhhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeeccccccccceec
Q 010455          347 FAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFT  426 (510)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~~~~  426 (510)
                                             ...++        ++||.+++||+++++++.+++.+.+++++++.||+||++.+++.
T Consensus       307 -----------------------~~~~~--------~~l~~~~~~G~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~  355 (547)
T PRK13295        307 -----------------------SGRPV--------SSLRTFLCAGAPIPGALVERARAALGAKIVSAWGMTENGAVTLT  355 (547)
T ss_pred             -----------------------cCCCc--------ccceEEEEecCCCCHHHHHHHHHHhCCCeEEeccCCCCCCeeec
Confidence                                   00111        38999999999999999999999889999999999999876554


Q ss_pred             ccCCC-CccCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhhccCccccCCe-eecc
Q 010455          427 SLADV-FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGKN-PWQY  504 (510)
Q Consensus       427 ~~~~~-~~~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDl-~~d~  504 (510)
                      ..... .....++|+|+++++++|+| +++++++.|  +.|||+|+|+.++.||+++++.+.+. .+|||+|||+ ++|+
T Consensus       356 ~~~~~~~~~~~~~G~~~~~~~v~i~d-~~~~~~~~g--~~Gel~v~g~~~~~gY~~~~~~t~~~-~~g~~~TGD~~~~~~  431 (547)
T PRK13295        356 KLDDPDERASTTDGCPLPGVEVRVVD-ADGAPLPAG--QIGRLQVRGCSNFGGYLKRPQLNGTD-ADGWFDTGDLARIDA  431 (547)
T ss_pred             cCCCcchhccCccccccCCcEEEEEC-CCCCCCCCC--CCCeEEEEcCcccccccCCccccccC-CCCCeecceEEEEcC
Confidence            43222 22336889999999999999 888777666  89999999999999999999988765 6889999999 9999


Q ss_pred             CCccC
Q 010455          505 TFKKL  509 (510)
Q Consensus       505 dG~~~  509 (510)
                      ||.+.
T Consensus       432 ~g~l~  436 (547)
T PRK13295        432 DGYIR  436 (547)
T ss_pred             CceEE
Confidence            99754

>PRK00174 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=7.8e-53  Score=449.86  Aligned_cols=407  Identities=19%  Similarity=0.252  Sum_probs=319.5

Q ss_pred             CHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHHH
Q 010455           44 SPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACN  123 (510)
Q Consensus        44 sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA~~  123 (510)
                      ...++|+++++++|+++|+++.   +...+..+.+||+||.++++++|++|++.|+++||+|+++++|++++++++|||+
T Consensus        68 ~~~~~l~~~~~~~p~~~Al~~~---~~~~~~~~~lTy~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~  144 (637)
T PRK00174         68 VSYNCLDRHLKTRGDKVAIIWE---GDDPGDSRKITYRELHREVCRFANALKSLGVKKGDRVAIYMPMIPEAAVAMLACA  144 (637)
T ss_pred             HHHHHHHHhhccCCCCeEEEEE---CCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHH
Confidence            3567888889999999999976   4332345789999999999999999999999999999999999999999999999


Q ss_pred             hcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCCh---------hhHhhcCccCCCCccEEEEecCCChhhhhHhhhc
Q 010455          124 SQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI---------PSILSCLPRCCLYLKTIVSFANVSSSQKKEAEEL  194 (510)
Q Consensus       124 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  194 (510)
                      ++|++++|+++.++.+++.++++.++++++|+++...         ..+.+... ....++.++..........    ..
T Consensus       145 ~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----~~  219 (637)
T PRK00174        145 RIGAVHSVVFGGFSAEALADRIIDAGAKLVITADEGVRGGKPIPLKANVDEALA-NCPSVEKVIVVRRTGGDVD----WV  219 (637)
T ss_pred             HcCCEEEecCCCCCHHHHHHHHHhcCCcEEEEcCccccCCcccchHHHHHHHHH-hCCCccEEEEEcCCCCCcC----cC
Confidence            9999999999999999999999999999999987542         12222211 1234455555543221000    00


Q ss_pred             CceeeeHHHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhh-hhhhhhccccCCCCcEEEEec
Q 010455          195 GVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSV-DQMFVVTGKVCSEEDTYFSFL  273 (510)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~-~~~~~~~~~~~~~~d~~~~~~  273 (510)
                      ......++++..............++++++|+|||||||.||||+++|++++.+.... ...+     .+..+|++++..
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~-----~~~~~d~~~~~~  294 (637)
T PRK00174        220 EGRDLWWHELVAGASDECEPEPMDAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAMTMKYVF-----DYKDGDVYWCTA  294 (637)
T ss_pred             CCCcccHHHHHhhcCCCCCccccCCCCcEEEEECCCCCCCCceEEeCcchhHHHHHHHHHhcc-----CCCCCcEEEEcC
Confidence            0112345555543322222334567899999999999999999999999987655432 2233     677889999999


Q ss_pred             ChHHHHHHH-HHHHHHhcCcEEEEeCC-----CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHH
Q 010455          274 PLAHIYDQI-IETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEF  347 (510)
Q Consensus       274 pl~h~~g~~-~~l~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~  347 (510)
                      |++|..+.. .++.+|+.|+++++.++     ++..+++.++++++|++.++|++++.+++....               
T Consensus       295 ~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~---------------  359 (637)
T PRK00174        295 DVGWVTGHSYIVYGPLANGATTLMFEGVPNYPDPGRFWEVIDKHKVTIFYTAPTAIRALMKEGDE---------------  359 (637)
T ss_pred             CchHhhhhHHHHHHHHHcCCEEEEECCCCCCCChHHHHHHHHhcCCeEEeecHHHHHHHHhcCCc---------------
Confidence            999999876 47789999999998753     689999999999999999999999988652100               


Q ss_pred             HHHhhhhhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcC---CCeeeeccccccccce
Q 010455          348 AYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG---APLTQGYGLTESCSGC  424 (510)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g---~~l~~~yG~tE~~~~~  424 (510)
                                          ..+..++        ++||.+++||+++++++.+++.+.++   +++++.||+||++..+
T Consensus       360 --------------------~~~~~~~--------~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~  411 (637)
T PRK00174        360 --------------------HPKKYDL--------SSLRLLGSVGEPINPEAWEWYYKVVGGERCPIVDTWWQTETGGIM  411 (637)
T ss_pred             --------------------ccccCCc--------cceeEEEEeCCCCCHHHHHHHHHHhCCCCCceEecccccccCCce
Confidence                                0111122        28999999999999999999988875   7899999999998766


Q ss_pred             ecccCCC-CccCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEec--CCccccccCCchhhhhhh---ccCccccC
Q 010455          425 FTSLADV-FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRG--NTLFSGYYKRPDLTEEVI---VDGWFHTG  498 (510)
Q Consensus       425 ~~~~~~~-~~~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g--~~v~~gY~~~~~~~~~~~---~~gw~~TG  498 (510)
                      +...... ...++++|+|++|++++|+| ++|++++.|  +.|||+|+|  |+++.|||++++.+.+.+   .+|||+||
T Consensus       412 ~~~~~~~~~~~~~~vG~p~~g~~~~i~d-~~g~~~~~g--~~Gel~v~g~~p~~~~gy~~~~~~~~~~~~~~~~g~~~TG  488 (637)
T PRK00174        412 ITPLPGATPLKPGSATRPLPGIQPAVVD-EEGNPLEGG--EGGNLVIKDPWPGMMRTIYGDHERFVKTYFSTFKGMYFTG  488 (637)
T ss_pred             EecCCCCCCcCCCcccCCCCCceEEEEC-CCCCCCCCC--CcEEEEEcCCCCcccccccCCHHHHHHhhhcCCCCEEECC
Confidence            5443322 23347899999999999999 888877765  899999999  699999999999887766   47999999


Q ss_pred             Ce-eeccCCccC
Q 010455          499 KN-PWQYTFKKL  509 (510)
Q Consensus       499 Dl-~~d~dG~~~  509 (510)
                      |+ ++|+||++.
T Consensus       489 Dl~~~d~dG~l~  500 (637)
T PRK00174        489 DGARRDEDGYYW  500 (637)
T ss_pred             ceEEEcCCCcEE
Confidence            99 999999864

>TIGR02316 propion_prpE propionate--CoA ligase

Probab=100.00  E-value=6.5e-53  Score=449.25  Aligned_cols=411  Identities=16%  Similarity=0.142  Sum_probs=317.4

Q ss_pred             CCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHH
Q 010455           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (510)
Q Consensus        42 ~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA  121 (510)
                      .+...++|+++++.+|+++|+++.   +...+..+.+||+||.++++++|++|+++|+++||+|+++++|++++++++||
T Consensus        51 ~n~~~~~l~~~~~~~p~~~Al~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~n~~e~v~~~lA  127 (628)
T TIGR02316        51 TNLCHNALDRHLDERGEQLALVTV---SSETGQERTLTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAMLA  127 (628)
T ss_pred             eeHHHHHHHHHhCcCCCCeEEEEE---cCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence            455678898888899999999875   43334457899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCCh---------hhHhhcCccCCCCccEEEEecCCChhhhhHhh
Q 010455          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI---------PSILSCLPRCCLYLKTIVSFANVSSSQKKEAE  192 (510)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  192 (510)
                      |+++|++++|+++.++.+++..++++++++++|+++...         ..+.++..........+++++......    .
T Consensus       128 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~----~  203 (628)
T TIGR02316       128 CARIGAIHSVVFGGFASHSLALRIDDATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQHPPPHVLLVDRGLAPM----R  203 (628)
T ss_pred             HHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECCccccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCc----C
Confidence            999999999999999999999999999999999986432         112222211112344556554321100    0


Q ss_pred             hcCceeeeHHHHHHcCC-CCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHH-hhhhhhhhhccccCCCCcEEE
Q 010455          193 ELGVSCFSWEEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEV-LSVDQMFVVTGKVCSEEDTYF  270 (510)
Q Consensus       193 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~-~~~~~~~~~~~~~~~~~d~~~  270 (510)
                      ........++++..... .........++++++|+|||||||.||||+++|.+++... ..+...+     ++.++|+++
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~~~  278 (628)
T TIGR02316       204 LIPGRDVDYAALRTQHEDAQVPVEWLESNEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAIF-----GIRAGQVMF  278 (628)
T ss_pred             cccCccccHHHHhhccccCCCCceecCCCCcEEEEECCCCCCCCceEEECCcHHHHHHHHHHHHhc-----CCCCCcEEE
Confidence            00011234555544321 1112222467899999999999999999999999986443 3344444     778899999


Q ss_pred             EecChHHHHHHH-HHHHHHhcCcEEEEeCC-----CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHH
Q 010455          271 SFLPLAHIYDQI-IETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKL  344 (510)
Q Consensus       271 ~~~pl~h~~g~~-~~l~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~  344 (510)
                      +..|+.|..++. .++.+|+.|+++++.++     ++..+++.++++++|+++++|++++.|.+..              
T Consensus       279 ~~~~~~~~~g~~~~~~~~L~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~--------------  344 (628)
T TIGR02316       279 SASDVGWVVGHSYIVYAPLLAGAATVLYEGLPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQD--------------  344 (628)
T ss_pred             EcCCCCeeehhhHHHHHHHhccceEEEeCCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcC--------------
Confidence            999999999875 47789999999999763     6889999999999999999999998876411              


Q ss_pred             HHHHHHhhhhhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeeccccccccce
Q 010455          345 FEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGC  424 (510)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~~  424 (510)
                                           ....+..++        ++||.+++||+++++++.+++.+.+|..+++.||+||++..+
T Consensus       345 ---------------------~~~~~~~~l--------~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~~~yG~TE~~~~~  395 (628)
T TIGR02316       345 ---------------------AAWLRKHDL--------SSLHWLFLAGEPLDEPTAHWITDGLGKPVIDNYWQTETGWPV  395 (628)
T ss_pred             ---------------------CcccccCCc--------cceeEEEEecCCCCHHHHHHHHHHhCCCEEecccccccCcee
Confidence                                 001112223        389999999999999999999998899999999999998544


Q ss_pred             ecccCC---CCccCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecC---CccccccCCchhhhhhh----ccCc
Q 010455          425 FTSLAD---VFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGN---TLFSGYYKRPDLTEEVI----VDGW  494 (510)
Q Consensus       425 ~~~~~~---~~~~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~---~v~~gY~~~~~~~~~~~----~~gw  494 (510)
                      +.....   .....+++|+|+||++++|+|.++|++++.+  +.|||+|+||   +++.|||++++.+.+.+    .++|
T Consensus       396 ~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~~~~g--~~Gel~v~gp~~~g~~~~~~~~~~~~~~~~~~~~~~~~  473 (628)
T TIGR02316       396 LAIMPGLDLKPVKLGSPGLPMYGYHLRVLDEATGRPCGPN--EKGVLTVVPPLPPGCLSTVWGDDARFLKTYWSHFKRPL  473 (628)
T ss_pred             ecCCCCCCcCCCCCCCcccCcCCceEEEEECCCCCCCCCC--CcEEEEEecCCCccccccccCChHHHHHhhhhcCCCCE
Confidence            332221   1223488999999999999993367777665  8999999998   57899999998776654    4679


Q ss_pred             cccCCe-eeccCCccC
Q 010455          495 FHTGKN-PWQYTFKKL  509 (510)
Q Consensus       495 ~~TGDl-~~d~dG~~~  509 (510)
                      |+|||+ ++|+||++.
T Consensus       474 ~~TGD~g~~d~dG~l~  489 (628)
T TIGR02316       474 YSSFDWGIRDEDGYTF  489 (628)
T ss_pred             EECCceEEEcCCCcEE
Confidence            999999 999999865

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.

>PLN02574 4-coumarate--CoA ligase-like

Probab=100.00  E-value=1.2e-52  Score=442.03  Aligned_cols=419  Identities=20%  Similarity=0.249  Sum_probs=317.2

Q ss_pred             CCccccccccCCCCCCCCCCCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHh-CCCCC
Q 010455           23 GPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRS-RGVNP  101 (510)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~-~gv~~  101 (510)
                      ..++++..+...++..  +..++.+.+... +.+|+++|+++.   ++.    ..+||+||.++++++|++|++ .|+++
T Consensus        22 ~~~~~~~~~~~~~~~~--~~~~~~~~l~~~-~~~~~~~a~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~~G~~~   91 (560)
T PLN02574         22 TGIYSSKHPPVPLPSD--PNLDAVSFIFSH-HNHNGDTALIDS---STG----FSISYSELQPLVKSMAAGLYHVMGVRQ   91 (560)
T ss_pred             CeeecCCCCCCCCCCC--CCCCHHHHHhcC-cccCCCCEEEEC---CCC----CcccHHHHHHHHHHHHHHHHHHhCCCC
Confidence            4667766543222221  223443443333 678999999864   322    369999999999999999999 99999


Q ss_pred             CCEEEEEcCCchhHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEec
Q 010455          102 GDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFA  181 (510)
Q Consensus       102 gd~Vai~~~ns~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~  181 (510)
                      ||+|+++++|++++++++|||+++|++++|++|..+.+++.++++.++++++|++.+....+...      ... ++.+.
T Consensus        92 gd~V~i~~~n~~~~~~~~la~~~~G~v~v~l~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~------~~~-~~~~~  164 (560)
T PLN02574         92 GDVVLLLLPNSVYFPVIFLAVLSLGGIVTTMNPSSSLGEIKKRVVDCSVGLAFTSPENVEKLSPL------GVP-VIGVP  164 (560)
T ss_pred             CCEEEEECCCcchHHHHHHHHHHhCeEEeCcCcccCHHHHHHHHHhcCCEEEEECHHHHHHHHhc------CCc-EEecC
Confidence            99999999999999999999999999999999999999999999999999999998766554321      111 22221


Q ss_pred             CCChhhhhHhhhcCceeeeHHHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccc
Q 010455          182 NVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGK  261 (510)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~  261 (510)
                      ......     ........++.+..............++++++++|||||||.||+|++||+++...+..+.........
T Consensus       165 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~  239 (560)
T PLN02574        165 ENYDFD-----SKRIEFPKFYELIKEDFDFVPKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYE  239 (560)
T ss_pred             cccccc-----cCccCcccHHHHhhcCCcccccCCCCcCCEEEEEcCCCccCCCcEEEEeHHHHHHHHHHHHhccccccc
Confidence            110000     000112345555443322222334467899999999999999999999999999887765432111011


Q ss_pred             cCCCCcEEEEecChHHHHHHHH-HHHHHhcCcEEEEeCC-CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccCh
Q 010455          262 VCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGA  339 (510)
Q Consensus       262 ~~~~~d~~~~~~pl~h~~g~~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~  339 (510)
                      ....+++++..+|++|.+|+.. ++.++..|+++++.+. ++..+++.++++++|++.++|.++..+++....       
T Consensus       240 ~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-------  312 (560)
T PLN02574        240 YPGSDNVYLAALPMFHIYGLSLFVVGLLSLGSTIVVMRRFDASDMVKVIDRFKVTHFPVVPPILMALTKKAKG-------  312 (560)
T ss_pred             cCCCCcEEEEecchHHHHHHHHHHHHHHhcCCEEEEecCCCHHHHHHHHHHcCCeEEecCCHHHHHHHhCccc-------
Confidence            2236788999999999999875 5668889999988775 999999999999999999999999998752110       


Q ss_pred             hHHHHHHHHHHhhhhhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhc-CCCeeeecccc
Q 010455          340 LSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLT  418 (510)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~-g~~l~~~yG~t  418 (510)
                                                   ....++        +++|.+++||+++++++.+.+.+.+ ++.+++.||+|
T Consensus       313 -----------------------------~~~~~~--------~~lr~~~~gg~~l~~~~~~~~~~~~~~~~v~~~YG~t  355 (560)
T PLN02574        313 -----------------------------VCGEVL--------KSLKQVSCGAAPLSGKFIQDFVQTLPHVDFIQGYGMT  355 (560)
T ss_pred             -----------------------------cccCcc--------ccceEEEEecccCCHHHHHHHHHHCCCCcEEeccccc
Confidence                                         011112        2899999999999999999998887 68999999999


Q ss_pred             ccccceecccC-CCCccCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhh-ccCccc
Q 010455          419 ESCSGCFTSLA-DVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFH  496 (510)
Q Consensus       419 E~~~~~~~~~~-~~~~~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~gw~~  496 (510)
                      |++.+++.... ......+++|+|+++++++|+|.+++++++.|  +.|||+|+|++++.||+++++.+.+.| .+|||+
T Consensus       356 E~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~g~~~~~g--~~Gei~v~g~~~~~GY~~~~~~t~~~~~~~g~~~  433 (560)
T PLN02574        356 ESTAVGTRGFNTEKLSKYSSVGLLAPNMQAKVVDWSTGCLLPPG--NCGELWIQGPGVMKGYLNNPKATQSTIDKDGWLR  433 (560)
T ss_pred             ccCceeecCCCccccCCCCceeeeCCCcEEEEEeCCCCcCCCCC--CCeEEEEECcchhhhhcCChhHhhhhccCCCCcc
Confidence            99866543222 22234579999999999999995566666655  899999999999999999999999888 799999


Q ss_pred             cCCe-eeccCCccC
Q 010455          497 TGKN-PWQYTFKKL  509 (510)
Q Consensus       497 TGDl-~~d~dG~~~  509 (510)
                      |||+ ++|+||++.
T Consensus       434 TGDlg~~~~~G~l~  447 (560)
T PLN02574        434 TGDIAYFDEDGYLY  447 (560)
T ss_pred             cceEEEEECCCeEE
Confidence            9999 999999865

>PRK08314 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=5.9e-52  Score=436.26  Aligned_cols=405  Identities=22%  Similarity=0.324  Sum_probs=326.2

Q ss_pred             CCCCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhC-CCCCCCEEEEEcCCchhHHHH
Q 010455           40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSR-GVNPGDRCGIYGSNCPEWIIA  118 (510)
Q Consensus        40 ~~~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~-gv~~gd~Vai~~~ns~~~~~~  118 (510)
                      .+..++.++|.+.++++|+++|+++.   +      +.+||+||.+++.++|..|.+. |+++|++|+++++|+++++++
T Consensus         7 ~~~~tl~~~l~~~a~~~~~~~a~~~~---~------~~~Ty~~l~~~v~~~a~~L~~~~g~~~g~~V~i~~~~~~~~~~~   77 (546)
T PRK08314          7 LPETSLFHNLEVSARRYPDKTAIVFY---G------RAISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIA   77 (546)
T ss_pred             CCCCCHHHHHHHHHHHcCCCcceeec---C------ceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCChHHHHH
Confidence            34568999999999999999999876   4      5799999999999999999999 999999999999999999999


Q ss_pred             HHHHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhh-------h--
Q 010455          119 MEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQK-------K--  189 (510)
Q Consensus       119 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-------~--  189 (510)
                      ++||+++|++++|+++..+.+++..+++.++++.+|++.+....+.......  .++.++..........       .  
T Consensus        78 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (546)
T PRK08314         78 YYAILRANAVVVPVNPMNREEELAHYVTDSGARVAIVGSELAPKVAPAVGNL--RLRHVIVAQYSDYLPAEPEIAVPAWL  155 (546)
T ss_pred             HHHHHHcCcEEeecCcCcCHHHHHHHHHhCCCeEEEEccchhhhHHHHhhcc--CcceEEEecchhhcccccccCccccc
Confidence            9999999999999999999999999999999999999988766554433221  2333333211000000       0  


Q ss_pred             -----HhhhcCceeeeHHHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCC
Q 010455          190 -----EAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCS  264 (510)
Q Consensus       190 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~  264 (510)
                           ........+..+++...... ........++++++++|||||||.||+|.++|++++.++......+     .+.
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~  229 (546)
T PRK08314        156 RAEPPLQALAPGGVVAWKEALAAGL-APPPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWS-----NST  229 (546)
T ss_pred             ccccccccccccccccHHHHhcccC-CCCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhh-----CCC
Confidence                 00000112344555544321 1223345678999999999999999999999999999988877666     778


Q ss_pred             CCcEEEEecChHHHHHHHH-HHHHHhcCcEEEEeCC-CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHH
Q 010455          265 EEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSK  342 (510)
Q Consensus       265 ~~d~~~~~~pl~h~~g~~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~  342 (510)
                      .+|++++.+|++|..|+.. ++.++..|+++++.+. ++..+++.++++++|++.++|.++..++..             
T Consensus       230 ~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~ll~~-------------  296 (546)
T PRK08314        230 PESVVLAVLPLFHVTGMVHSMNAPIYAGATVVLMPRWDREAAARLIERYRVTHWTNIPTMVVDFLAS-------------  296 (546)
T ss_pred             CCceEEEEcCchHHHHHHHHHHHHHHcCCeEEecCCCCHHHHHHHHHHhcCceecccHHHHHHHHhC-------------
Confidence            9999999999999999864 7789999999999875 899999999999999999999999887641             


Q ss_pred             HHHHHHHHhhhhhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeecccccccc
Q 010455          343 KLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCS  422 (510)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~  422 (510)
                                              +..+..+++        ++|.+++||+++++++.+++.+.++.++++.||+||++.
T Consensus       297 ------------------------~~~~~~~~~--------~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~  344 (546)
T PRK08314        297 ------------------------PGLAERDLS--------SLRYIGGGGAAMPEAVAERLKELTGLDYVEGYGLTETMA  344 (546)
T ss_pred             ------------------------CCccccCch--------hhheeeeccccCCHHHHHHHHHHcCCcEEeccccccccc
Confidence                                    111222233        789999999999999999999988999999999999987


Q ss_pred             ceecccCCCCccCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhhc--c--CccccC
Q 010455          423 GCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV--D--GWFHTG  498 (510)
Q Consensus       423 ~~~~~~~~~~~~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~--~--gw~~TG  498 (510)
                      .+.....+.. ..+++|+|++|++++|+|.+++..++.+  +.|||+|+|++++.||+++++.+.+.|.  +  +||+||
T Consensus       345 ~~~~~~~~~~-~~~~~G~~~~g~~~~i~d~~~~~~~~~g--~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~TG  421 (546)
T PRK08314        345 QTHSNPPDRP-KLQCLGIPTFGVDARVIDPETLEELPPG--EVGEIVVHGPQVFKGYWNRPEATAEAFIEIDGKRFFRTG  421 (546)
T ss_pred             ceecCCCcCC-CCCccCcccCCeEEEEEeCCCCcCCCCC--CceEEEEECCchhccccCChhHhhhhhhhcCCCceEecC
Confidence            7665444333 3378999999999999994456666665  7999999999999999999999988872  3  499999


Q ss_pred             Ce-eeccCCccC
Q 010455          499 KN-PWQYTFKKL  509 (510)
Q Consensus       499 Dl-~~d~dG~~~  509 (510)
                      |+ ++|+||++.
T Consensus       422 Dl~~~~~~g~l~  433 (546)
T PRK08314        422 DLGRMDEEGYFF  433 (546)
T ss_pred             CEEEEcCCCcEE
Confidence            99 999999764

>PLN02246 4-coumarate--CoA ligase

Probab=100.00  E-value=1.5e-51  Score=431.98  Aligned_cols=416  Identities=22%  Similarity=0.302  Sum_probs=327.3

Q ss_pred             CCCCccccccccCCCCCCCCCCCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCC
Q 010455           21 SGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVN  100 (510)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~  100 (510)
                      .++-+||+.+.....    ....++.+++.++++++|+++|+++.   +..    +.+||.||.++++++|+.|.+.|++
T Consensus         5 ~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~a~~~~---~~~----~~~ty~el~~~~~~la~~L~~~g~~   73 (537)
T PLN02246          5 SEEFIFRSKLPDIYI----PNHLPLHDYCFERLSEFSDRPCLIDG---ATG----RVYTYADVELLSRRVAAGLHKLGIR   73 (537)
T ss_pred             cceeEecCCCCCCCC----CCCCcHHHHHHHHHHhCCCCeEEEec---CCC----ceeeHHHHHHHHHHHHHHHHHhCCC
Confidence            344556666544222    22468999999999999999999864   321    5799999999999999999999999


Q ss_pred             CCCEEEEEcCCchhHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEe
Q 010455          101 PGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSF  180 (510)
Q Consensus       101 ~gd~Vai~~~ns~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~  180 (510)
                      +||+|+++++|+++++++++||+++|++++|+++..+.+++..+++.++++++|+++.....+.+....  ..+ .++..
T Consensus        74 ~gd~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~--~~~-~~i~~  150 (537)
T PLN02246         74 QGDVVMLLLPNCPEFVLAFLGASRRGAVTTTANPFYTPAEIAKQAKASGAKLIITQSCYVDKLKGLAED--DGV-TVVTI  150 (537)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHcCEEEecCCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHHhhc--CCc-eEEEe
Confidence            999999999999999999999999999999999999999999999999999999998776655433221  111 34444


Q ss_pred             cCCChhhhhHhhhcCceeeeHHHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhcc
Q 010455          181 ANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTG  260 (510)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~  260 (510)
                      ++...           ....+.++..............++++++++|||||||.||+|+++|+++...+........ ..
T Consensus       151 ~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~-~~  218 (537)
T PLN02246        151 DDPPE-----------GCLHFSELTQADENELPEVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGEN-PN  218 (537)
T ss_pred             CCCCC-----------CceeHHHHhcCCCCCCCCCCCCccCEEEEEeCCCCCCCCceEEEeHHHHHHHHHHHhhccc-cc
Confidence            33211           1233444443222122223346789999999999999999999999999988765433110 01


Q ss_pred             ccCCCCcEEEEecChHHHHHHHH-HHHHHhcCcEEEEeCC-CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccC
Q 010455          261 KVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGG  338 (510)
Q Consensus       261 ~~~~~~d~~~~~~pl~h~~g~~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~  338 (510)
                      ..+..+|++++.+|++|.+++.. ++.++..|+++++.+. ++..+++.++++++|++.++|.++..+++..        
T Consensus       219 ~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~--------  290 (537)
T PLN02246        219 LYFHSDDVILCVLPMFHIYSLNSVLLCGLRVGAAILIMPKFEIGALLELIQRHKVTIAPFVPPIVLAIAKSP--------  290 (537)
T ss_pred             cCCCCCcEEEEeechHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHhCceEEEcchHHHHHHhcCc--------
Confidence            26789999999999999999865 6678999999999876 8999999999999999999999998876411        


Q ss_pred             hhHHHHHHHHHHhhhhhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhc-CCCeeeeccc
Q 010455          339 ALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGL  417 (510)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~-g~~l~~~yG~  417 (510)
                                                   .....++        +++|.+++||+++++++.+++.+.+ +..+++.||+
T Consensus       291 -----------------------------~~~~~~~--------~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~YG~  333 (537)
T PLN02246        291 -----------------------------VVEKYDL--------SSIRMVLSGAAPLGKELEDAFRAKLPNAVLGQGYGM  333 (537)
T ss_pred             -----------------------------cccccCc--------cceeEEEEecCcCCHHHHHHHHHHcCCCeEeccccc
Confidence                                         1111112        2899999999999999999999988 6789999999


Q ss_pred             cccccceecccC---C-CCccCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhh-cc
Q 010455          418 TESCSGCFTSLA---D-VFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VD  492 (510)
Q Consensus       418 tE~~~~~~~~~~---~-~~~~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~  492 (510)
                      ||++.+++....   + ....++++|+|+++++++|+|.+++.+++.|  +.|||+++|++++.||+++++.+.+.| .+
T Consensus       334 tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g--~~Gel~v~g~~~~~GY~~~~~~~~~~~~~~  411 (537)
T PLN02246        334 TEAGPVLAMCLAFAKEPFPVKSGSCGTVVRNAELKIVDPETGASLPRN--QPGEICIRGPQIMKGYLNDPEATANTIDKD  411 (537)
T ss_pred             cccCcccccccccCCCCccccCCccccccCCcEEEEecCCCCCcCCCC--CceEEEEECCchhccccCCchhhhhcccCC
Confidence            999876543221   1 1223478999999999999994456666655  899999999999999999999999888 78


Q ss_pred             CccccCCe-eeccCCccC
Q 010455          493 GWFHTGKN-PWQYTFKKL  509 (510)
Q Consensus       493 gw~~TGDl-~~d~dG~~~  509 (510)
                      |||+|||+ ++|+||++.
T Consensus       412 ~~~~TGD~~~~~~~g~l~  429 (537)
T PLN02246        412 GWLHTGDIGYIDDDDELF  429 (537)
T ss_pred             CCeeecceEEEeCCCeEE
Confidence            99999999 999999754

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.1e-51  Score=431.15  Aligned_cols=401  Identities=23%  Similarity=0.355  Sum_probs=332.6

Q ss_pred             CCCCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHH
Q 010455           40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM  119 (510)
Q Consensus        40 ~~~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~  119 (510)
                      +++.++.+.|++.++.+|+++|+.+.   +      +.+||+||.+++.++|..|.+.|+++||+|+++++|++++++++
T Consensus         2 ~~~~~i~~~l~~~~~~~~~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~   72 (513)
T PRK07656          2 NEWMTLPELLARAARRFGDKEAYVFG---D------QRLTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAA   72 (513)
T ss_pred             CccccHHHHHHHHHHHCCCCeEEEeC---C------CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHH
Confidence            34688999999999999999999865   3      57999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCceee
Q 010455          120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCF  199 (510)
Q Consensus       120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  199 (510)
                      +||+++|++++|+++..+.+++..+++.++++++++++.......... ......+.++.........      ......
T Consensus        73 la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------~~~~~~  145 (513)
T PRK07656         73 LGALKAGAVVVPLNTRYTADEAAYILARGDAKALFVLGLFLGVDYSAT-TRLPALEHVVICETEEDDP------HTEKMK  145 (513)
T ss_pred             HHHHhcCeEEEecCcccCHHHHHHHHhhcCceEEEEchhhHHHHHHHH-hccCCccEEEEEcCccccc------Cccccc
Confidence            999999999999999999999999999999999999988766554332 2234445555444332110      000223


Q ss_pred             eHHHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHH
Q 010455          200 SWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIY  279 (510)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~  279 (510)
                      .|+++..............++++++++|||||||.||+|.++|.++...+..+...+     ++..+|++++.+|++|.+
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~  220 (513)
T PRK07656        146 TFTDFLAAGDPAERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYL-----GLTEGDRYLAANPFFHVF  220 (513)
T ss_pred             cHHHHHhcCCCCCCcCCCCCCceEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhh-----CCCCCCeEEEccchHHHH
Confidence            566665443222233445778999999999999999999999999999888877776     788999999999999999


Q ss_pred             HHHH-HHHHHhcCcEEEEeCC-CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhcc
Q 010455          280 DQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMK  357 (510)
Q Consensus       280 g~~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (510)
                      ++.. ++.+++.|+++++.+. ++..+++.++++++|++.++|.++..+++...                          
T Consensus       221 ~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~--------------------------  274 (513)
T PRK07656        221 GYKAGVNAPLMRGATILPLPVFDPDEVFRLIETERITVLPGPPTMYNSLLQHPD--------------------------  274 (513)
T ss_pred             HHHHHHHHHHHcCceEEecCcCCHHHHHHHHHHhCCeEEechHHHHHHHHcCCC--------------------------
Confidence            9875 7789999999988765 89999999999999999999999999875211                          


Q ss_pred             cCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCC-CeeeeccccccccceecccCCCCcc--
Q 010455          358 KGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGA-PLTQGYGLTESCSGCFTSLADVFNM--  434 (510)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~-~l~~~yG~tE~~~~~~~~~~~~~~~--  434 (510)
                                 ....++        +++|.+++||+++++++.+.+.+.++. .+++.||+||++++++....+....  
T Consensus       275 -----------~~~~~~--------~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~  335 (513)
T PRK07656        275 -----------RSAEDL--------SSLRLAVTGAASMPVALLERFESELGVDIVLTGYGLSEASGVTTFNRLDDDRKTV  335 (513)
T ss_pred             -----------cCCCCc--------cceeeEEecCCCCCHHHHHHHHHHcCCCceEeEEccccCCCceeecCcccccccc
Confidence                       011112        289999999999999999999998998 8999999999987776555433222  


Q ss_pred             CCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhh-ccCccccCCe-eeccCCccC
Q 010455          435 IGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGKN-PWQYTFKKL  509 (510)
Q Consensus       435 ~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~gw~~TGDl-~~d~dG~~~  509 (510)
                      ++++|+|+++++++|+| +++++++.|  +.|||+++|+.++.||++++..+...+ .+|||+|||+ ++++||++.
T Consensus       336 ~~~vG~~~~~~~~~i~d-~~~~~~~~g--~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~tGDl~~~~~~g~~~  409 (513)
T PRK07656        336 AGTIGTAIAGVENKIVN-ELGEEVPVG--EVGELLVRGPNVMKGYYDDPEATAAAIDADGWLHTGDLGRLDEEGYLY  409 (513)
T ss_pred             CCCccccCCCcEEEEEC-CCCCCCCCC--CceEEEEEcchhhhhhcCCHHHHhhhhccCCceeccceEEEcCCeeEE
Confidence            57899999999999999 888877766  899999999999999999999998888 5999999999 999999754

>PRK13382 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=9.5e-52  Score=432.92  Aligned_cols=390  Identities=19%  Similarity=0.204  Sum_probs=315.0

Q ss_pred             CCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHH
Q 010455           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (510)
Q Consensus        42 ~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA  121 (510)
                      ..++.++|.++++++|+++|+++.   +      ..+||+||.++++++|++|.+.|+++|++|+++++|+++++++++|
T Consensus        42 ~~~~~~~l~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~~~~~A~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA  112 (537)
T PRK13382         42 GMGPTSGFAIAAQRCPDRPGLIDE---L------GTLTWRELDERSDALAAALQALPIGEPRVVGIMCRNHRGFVEALLA  112 (537)
T ss_pred             cCCHHHHHHHHHHhCCCCeEEEeC---C------CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCcHHHHHHHHH
Confidence            357999999999999999999854   3      4799999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCceeeeH
Q 010455          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW  201 (510)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  201 (510)
                      |+++|++++|+++.++.+++.++++.++++++|++.+....+...... ......++.+.+...            ...+
T Consensus       113 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------------~~~~  179 (537)
T PRK13382        113 ANRIGADILLLNTSFAGPALAEVVTREGVDTVIYDEEFSATVDRALAD-CPQATRIVAWTDEDH------------DLTV  179 (537)
T ss_pred             HHHcCcEEEecCcccCHHHHHHHHHhcCCCEEEEchhhHHHHHHHHhh-ccccceEEEecCCcc------------cccH
Confidence            999999999999999999999999999999999998766554433221 122223333322110            1233


Q ss_pred             HHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHH
Q 010455          202 EEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ  281 (510)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~  281 (510)
                      +.+.......  .....+++.++++|||||||.||+|+++|+++......+...+     .+..+|+++...|++|.+|+
T Consensus       180 ~~~~~~~~~~--~~~~~~~~~~~il~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~~~~g~  252 (537)
T PRK13382        180 EVLIAAHAGQ--RPEPTGRKGRVILLTSGTTGTPKGARRSGPGGIGTLKAILDRT-----PWRAEEPTVIVAPMFHAWGF  252 (537)
T ss_pred             HHHhhccCcC--CCCCCCCCCeEEEECCCCCCCCCEEEeccchHHHHHHHHHHhh-----CCCCCCeEEEecChHhhhHH
Confidence            4443322111  1123467889999999999999999999999988887766666     67788999999999999999


Q ss_pred             HHHHHHHhcCcEEEEeCC-CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhcccCC
Q 010455          282 IIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGM  360 (510)
Q Consensus       282 ~~~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (510)
                      ...+.++..|+++++.+. ++..+++.++++++|++.++|+++..+++....                            
T Consensus       253 ~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~----------------------------  304 (537)
T PRK13382        253 SQLVLAASLACTIVTRRRFDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAE----------------------------  304 (537)
T ss_pred             HHHHHHHhcCcEEEECCCcCHHHHHHHHHHhCCEEEEehHHHHHHHHcCCch----------------------------
Confidence            778889999999988664 899999999999999999999999988642100                            


Q ss_pred             CCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeeccccccccceecccCCCCccCCcccc
Q 010455          361 PQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGV  440 (510)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~~~~~~~~~~~~~~svG~  440 (510)
                             ..+..++        .++|.+++||+++++++.+.+.+.+|..+++.||+||++.+++.........++++|+
T Consensus       305 -------~~~~~~~--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~vG~  369 (537)
T PRK13382        305 -------VRNRYSG--------RSLRFAAASGSRMRPDVVIAFMDQFGDVIYNNYNATEAGMIATATPADLRAAPDTAGR  369 (537)
T ss_pred             -------hcccCCc--------cceeEEEEcCCCCCHHHHHHHHHHcCCcEEecccccccCcceecChhHhccCCCCccc
Confidence                   0111112        2799999999999999999999989999999999999987766443332334589999


Q ss_pred             ccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhhccCccccCCe-eeccCCccC
Q 010455          441 PMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGKN-PWQYTFKKL  509 (510)
Q Consensus       441 p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDl-~~d~dG~~~  509 (510)
                      |+++++++|+| +++++++.|  +.|||+++|++++.||+  ++.+. .|.+|||+|||+ ++|+||++.
T Consensus       370 p~~~~~~~i~d-~~~~~~~~g--~~GEl~v~g~~~~~gY~--~~~~~-~~~~g~~~TGDl~~~~~~g~l~  433 (537)
T PRK13382        370 PAEGTEIRILD-QDFREVPTG--EVGTIFVRNDTQFDGYT--SGSTK-DFHDGFMASGDVGYLDENGRLF  433 (537)
T ss_pred             cCcCcEEEEEC-CCCCCCCCC--CeeEEEEEcCCcccCcc--ccchh-hccCCCEeeCceEEEeCCCcEE
Confidence            99999999999 888877766  89999999999999998  44443 456899999999 999999864

>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=1.9e-51  Score=425.98  Aligned_cols=373  Identities=24%  Similarity=0.337  Sum_probs=311.5

Q ss_pred             CCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHH
Q 010455           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (510)
Q Consensus        42 ~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA  121 (510)
                      +.++.++|++++.++||++|+.+.   +      +.+||+||.++++++|++|.+.|+++|++|+++++|++++++++||
T Consensus         1 ~~~~~~~l~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~~~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la   71 (483)
T PRK03640          1 METMPNWLKQRAFLTPDRTAIEFE---E------KKVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHA   71 (483)
T ss_pred             CCcHHHHHHHHHHhCCCceEEEeC---C------eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence            358899999999999999999865   3      6899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCceeeeH
Q 010455          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW  201 (510)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  201 (510)
                      |+++|++++|+++..+.+++..+++.++++.+++++.....+....                              ...+
T Consensus        72 ~~~~G~~~v~i~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~------------------------------~~~~  121 (483)
T PRK03640         72 LQQLGAVAVLLNTRLSREELLWQLDDAEVKCLITDDDFEAKLIPGI------------------------------SVKF  121 (483)
T ss_pred             HHhCCcEEEecCcCCCHHHHHHHHHhCCCCEEEEcchhhHHHhhhc------------------------------cccH
Confidence            9999999999999999999999999999999999876554332110                              0012


Q ss_pred             HHHHHcC-CCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHH
Q 010455          202 EEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD  280 (510)
Q Consensus       202 ~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g  280 (510)
                      +++.... ..........++++++++|||||||.||+|.+||.++...+......+     ++..+|++++.+|++|..+
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~g  196 (483)
T PRK03640        122 AELMNGPKEEAEIQEEFDLDEVATIMYTSGTTGKPKGVIQTYGNHWWSAVGSALNL-----GLTEDDCWLAAVPIFHISG  196 (483)
T ss_pred             HHHhhcccccCCCCCCCCCCCeEEEEeCCCcCCCCcEEEEecHHHHHHHHHHHHhc-----CCCcCcEEEEecCHHHHHH
Confidence            3332221 111112234578899999999999999999999999988877666555     7889999999999999999


Q ss_pred             HHHHHHHHhcCcEEEEeCC-CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhcccC
Q 010455          281 QIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKG  359 (510)
Q Consensus       281 ~~~~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (510)
                      +..++.++..|+++++.+. ++..+++.++++++|++.++|+++..++..+...                          
T Consensus       197 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~--------------------------  250 (483)
T PRK03640        197 LSILMRSVIYGMRVVLVEKFDAEKINKLLQTGGVTIISVVSTMLQRLLERLGEG--------------------------  250 (483)
T ss_pred             HHHHHHHHhcCCEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCcc--------------------------
Confidence            9888889999999998876 9999999999999999999999999986421100                          


Q ss_pred             CCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeeccccccccceec-ccCCCCccCCcc
Q 010455          360 MPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFT-SLADVFNMIGTV  438 (510)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~~~~-~~~~~~~~~~sv  438 (510)
                                 .         ...+||.+++||+++++.+.+++++. |+++++.||+||++..+.. ........++++
T Consensus       251 -----------~---------~~~~lr~~~~~g~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~v  309 (483)
T PRK03640        251 -----------T---------YPSSFRCMLLGGGPAPKPLLEQCKEK-GIPVYQSYGMTETASQIVTLSPEDALTKLGSA  309 (483)
T ss_pred             -----------c---------cCCcceEEEEcCCCCCHHHHHHHHHh-CCCeeeeeccCcccccccccCcccccccCCCc
Confidence                       0         00289999999999999999988875 9999999999998764333 322233445899


Q ss_pred             ccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhhccCccccCCe-eeccCCccC
Q 010455          439 GVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGKN-PWQYTFKKL  509 (510)
Q Consensus       439 G~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDl-~~d~dG~~~  509 (510)
                      |+|+++++++|++ ++ .+++.+  +.|||+|+|++++.||+++++.+.+.|.+|||+|||+ ++|+||.+.
T Consensus       310 G~p~~~~~~~i~~-~~-~~~~~g--~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~tGDl~~~~~~g~l~  377 (483)
T PRK03640        310 GKPLFPCELKIEK-DG-VVVPPF--EEGEIVVKGPNVTKGYLNREDATRETFQDGWFKTGDIGYLDEEGFLY  377 (483)
T ss_pred             ccccCCcEEEEec-CC-CcCCCC--CceEEEEECcchhhhhcCCHHHHHHHHhcCCeeccceEEEcCCCCEE
Confidence            9999999999998 53 555544  8999999999999999999999999999999999999 999999754

>PRK05677 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.7e-51  Score=432.09  Aligned_cols=405  Identities=21%  Similarity=0.333  Sum_probs=315.7

Q ss_pred             CCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHh-CCCCCCCEEEEEcCCchhHHHHHH
Q 010455           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRS-RGVNPGDRCGIYGSNCPEWIIAME  120 (510)
Q Consensus        42 ~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~-~gv~~gd~Vai~~~ns~~~~~~~l  120 (510)
                      ..|+.++|++.++.+|+++|++..   +      +.+||+||.++++++|++|.+ .|+++||+|+++++|++++++++|
T Consensus        23 ~~~~~~~l~~~a~~~p~~~al~~~---~------~~~Ty~el~~~~~~la~~L~~~~gi~~gd~Vai~~~n~~~~~~~~l   93 (562)
T PRK05677         23 YPNIQAVLKQSCQRFADKPAFSNL---G------KTLTYGELYKLSGAFAAWLQQHTDLKPGDRIAVQLPNVLQYPVAVF   93 (562)
T ss_pred             cCcHHHHHHHHHHhCCCCeeEEEC---C------ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHH
Confidence            358999999999999999999854   3      579999999999999999997 599999999999999999999999


Q ss_pred             HHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCC--h-hhhhHhh-----
Q 010455          121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVS--S-SQKKEAE-----  192 (510)
Q Consensus       121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~-~~~~~~~-----  192 (510)
                      ||+++|++++|++|..+.+++.++++.++++++|++......+.+....  ..++.++......  . .......     
T Consensus        94 a~~~~Ga~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (562)
T PRK05677         94 GAMRAGLIVVNTNPLYTAREMEHQFNDSGAKALVCLANMAHLAEKVLPK--TGVKHVIVTEVADMLPPLKRLLINAVVKH  171 (562)
T ss_pred             HHHHcCeEEeecCCCCCHHHHHHHHhccCceEEEEecchhhhHHHhhhc--cCcceeEEecccccccchhhhhcccchhh
Confidence            9999999999999999999999999999999999987765544332211  1233333321110  0 0000000     


Q ss_pred             ------h-cCceeeeHHHHHHcCC-CCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCC
Q 010455          193 ------E-LGVSCFSWEEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCS  264 (510)
Q Consensus       193 ------~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~  264 (510)
                            . .......+.+.+.... .........++++++++|||||||.||+|.++|+++...+......+.   ....
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~---~~~~  248 (562)
T PRK05677        172 VKKMVPAYHLPQAVKFNDALAKGAGQPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMG---SNLN  248 (562)
T ss_pred             ccccccccCCcccccHHHHHhcCCCCCCCCCCCCccCEEEEEeCCCCCCCCcEEEEehhHHHHHHHHHHHHhc---cCCC
Confidence                  0 0001223444443321 111223346789999999999999999999999999887766544431   1222


Q ss_pred             -CCcEEEEecChHHHHHHHH-HHHHHhcCcEEEEeCC--CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChh
Q 010455          265 -EEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGAL  340 (510)
Q Consensus       265 -~~d~~~~~~pl~h~~g~~~-~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~  340 (510)
                       ..+.+++.+|++|.+++.. ++..+..|++.++.+.  ++..+++.++++++|+++++|.++..++..           
T Consensus       249 ~~~~~~~~~~pl~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~-----------  317 (562)
T PRK05677        249 EGCEILIAPLPLYHIYAFTFHCMAMMLIGNHNILISNPRDLPAMVKELGKWKFSGFVGLNTLFVALCNN-----------  317 (562)
T ss_pred             CCccEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHcCceEEecHHHHHHHHHhC-----------
Confidence             3478899999999999864 6668888888777653  889999999999999999999999887641           


Q ss_pred             HHHHHHHHHHhhhhhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeecccccc
Q 010455          341 SKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTES  420 (510)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~  420 (510)
                                                ......+++        ++|.+++||+++++++.+.+++.+|+++++.||+||+
T Consensus       318 --------------------------~~~~~~~~~--------~lr~v~~gG~~~~~~~~~~~~~~~~~~v~~~YG~tE~  363 (562)
T PRK05677        318 --------------------------EAFRKLDFS--------ALKLTLSGGMALQLATAERWKEVTGCAICEGYGMTET  363 (562)
T ss_pred             --------------------------cccccCChh--------hceEEEEcCccCCHHHHHHHHHHcCCCeeccCCcccc
Confidence                                      001111222        8999999999999999999999889999999999999


Q ss_pred             ccceecccCCCCccCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhh-ccCccccCC
Q 010455          421 CSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGK  499 (510)
Q Consensus       421 ~~~~~~~~~~~~~~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~gw~~TGD  499 (510)
                      +.++........ .++++|+|+++++++|+| +++++++.|  +.|||+|+|+.++.||+++++.+.+.| .+|||+|||
T Consensus       364 ~~~~~~~~~~~~-~~~~vG~~~~~~~v~i~d-~~~~~~~~g--~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~~~TGD  439 (562)
T PRK05677        364 SPVVSVNPSQAI-QVGTIGIPVPSTLCKVID-DDGNELPLG--EVGELCVKGPQVMKGYWQRPEATDEILDSDGWLKTGD  439 (562)
T ss_pred             CcceeecCccCC-CCCccCccCCCCEEEEEC-CCCCCCCCC--CCeEEEEecCccchhhcCCchhhhhccCCCCcccccc
Confidence            876665443322 347899999999999999 888877766  899999999999999999999999999 699999999


Q ss_pred             e-eeccCCccC
Q 010455          500 N-PWQYTFKKL  509 (510)
Q Consensus       500 l-~~d~dG~~~  509 (510)
                      + ++|+||++.
T Consensus       440 lg~~~~~G~l~  450 (562)
T PRK05677        440 IALIQEDGYMR  450 (562)
T ss_pred             eEEECCCCcEE
Confidence            9 999999864

>PRK05857 acyl-CoA synthetase; Validated

Probab=100.00  E-value=5.2e-52  Score=435.20  Aligned_cols=402  Identities=21%  Similarity=0.240  Sum_probs=307.1

Q ss_pred             CCCCCCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHH
Q 010455           38 SPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWII  117 (510)
Q Consensus        38 ~~~~~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~  117 (510)
                      -+..+.++.+.|.++|+++|+++|+++.   ++.    +.+||+||.++++++|+.|.+.|+++|++|+++++|++++++
T Consensus         9 ~~~~~~~~~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~e~~~   81 (540)
T PRK05857          9 MPQLPSTVLDRVFEQARQQPEAIALRRC---DGT----SALRYRELVAEVGGLAADLRAQSVSRGSRVLVISDNGPETYL   81 (540)
T ss_pred             cccCCcchHHHHHHHHhhCCCcEEEeec---CCC----ceeeHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcCCCHHHHH
Confidence            3345678999999999999999999865   432    579999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCce
Q 010455          118 AMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS  197 (510)
Q Consensus       118 ~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  197 (510)
                      ++|||+++|++++|+++..+.+++.++++.++++.+|+++...... ..+.+....+. ++..+.....        .  
T Consensus        82 ~~lA~~~~G~v~v~l~~~~~~~~l~~~~~~~~~~~ii~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~--------~--  149 (540)
T PRK05857         82 SVLACAKLGAIAVMADGNLPIAAIERFCQITDPAAALVAPGSKMAS-SAVPEALHSIP-VIAVDIAAVT--------R--  149 (540)
T ss_pred             HHHHHHHcCeEEEecCccCCHHHHHHHHHhcCCceEEEeccchhcc-ccccccccccc-eeEeeccccc--------c--
Confidence            9999999999999999999999999999999999999987653211 11111111121 2222211100        0  


Q ss_pred             eeeHHHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHH
Q 010455          198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAH  277 (510)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h  277 (510)
                      .  +...... ..........++++++++|||||||.||+|.++|+++.++........ ........++++++.+|++|
T Consensus       150 ~--~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~h  225 (540)
T PRK05857        150 E--SEHSLDA-ASLAGNADQGSEDPLAMIFTSGTTGEPKAVLLANRTFFAVPDILQKEG-LNWVTWVVGETTYSPLPATH  225 (540)
T ss_pred             c--ccccccc-cccccccCCCCCCeEEEEeCCCCCCCCCeEEEechhhhhhhHHhhhcc-ccccccccCceeeecCCccc
Confidence            0  0000000 001112234678999999999999999999999999987655432210 00014456789999999999


Q ss_pred             HHHHHHHHHHHhcCcEEEEeCCCHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhcc
Q 010455          278 IYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMK  357 (510)
Q Consensus       278 ~~g~~~~l~~l~~G~~~v~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (510)
                      ..++...+.+++.|+++++.+.++..+++.++++++|+++++|.++..+++....                         
T Consensus       226 ~~~l~~~~~~l~~G~~~v~~~~~~~~~~~~i~~~~it~~~~~P~~~~~l~~~~~~-------------------------  280 (540)
T PRK05857        226 IGGLWWILTCLMHGGLCVTGGENTTSLLEILTTNAVATTCLVPTLLSKLVSELKS-------------------------  280 (540)
T ss_pred             cchHHHHHHHhhcceeEEecCCChhHHHHHHHhcCcceEEeChHHHHHHHhcccc-------------------------
Confidence            9998888889999999887666899999999999999999999999988652110                         


Q ss_pred             cCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeeccccccccceecccCCC----Cc
Q 010455          358 KGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADV----FN  433 (510)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~~~~~~~~~----~~  433 (510)
                                  +..++        +++|.+++||++++....++++ .+|+++++.||+||++..+.....+.    ..
T Consensus       281 ------------~~~~~--------~~lr~~~~gG~~~~~~~~~~~~-~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~  339 (540)
T PRK05857        281 ------------ANATV--------PSLRLVGYGGSRAIAADVRFIE-ATGVRTAQVYGLSETGCTALCLPTDDGSIVKI  339 (540)
T ss_pred             ------------CCCcC--------ccceEEEEcCccCCchhHHHHH-HhCCeeecccCCCcCCceeeeccccccccccc
Confidence                        01112        2899999999999887776554 56999999999999986544322221    11


Q ss_pred             cCCccccccCCeEEEEeecCCCCcC-CC---CCCCcceEEEecCCccccccCCchhhhhhhccCccccCCe-eeccCCcc
Q 010455          434 MIGTVGVPMTTVEARLESVPEMGYD-AL---SSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGKN-PWQYTFKK  508 (510)
Q Consensus       434 ~~~svG~p~~g~~i~ivd~~~~~~~-~~---~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDl-~~d~dG~~  508 (510)
                      .++++|+|++|++++|+| +++... +.   ..++.|||+|+|++++.||+++++.+.+.|.+|||+|||+ ++|+||++
T Consensus       340 ~~~~~G~~~~g~~v~i~d-~~~~~~~~~~~~~~~~~Gel~v~g~~~~~GY~~~~~~t~~~~~~g~~~TGDlg~~d~~g~l  418 (540)
T PRK05857        340 EAGAVGRPYPGVDVYLAA-TDGIGPTAPGAGPSASFGTLWIKSPANMLGYWNNPERTAEVLIDGWVNTGDLLERREDGFF  418 (540)
T ss_pred             ccCCcCcccCCcEEEEEC-ccccCccccccCCCCCcceEEEeCcchhhhhhCCccchhhhcCCCceeccceEEEcCCceE
Confidence            347899999999999999 666532 21   2347899999999999999999999999999999999999 99999976


Q ss_pred             C
Q 010455          509 L  509 (510)
Q Consensus       509 ~  509 (510)
                      .
T Consensus       419 ~  419 (540)
T PRK05857        419 Y  419 (540)
T ss_pred             E
Confidence            4

>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase

Probab=100.00  E-value=3.1e-51  Score=428.58  Aligned_cols=394  Identities=18%  Similarity=0.182  Sum_probs=315.3

Q ss_pred             CCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHH
Q 010455           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (510)
Q Consensus        42 ~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA  121 (510)
                      ..++.++|+++++++|+++|+++.   +      +.+||+||.++++++|.+|.+.|+++|++|+++++|+++++++++|
T Consensus        22 ~~~l~~~~~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la   92 (527)
T TIGR02275        22 DKPLTDILRDQAARYPDAIAIICG---N------RQWSYRELDQRADNLAAGLTKLGIGQGDTAVVQLPNIAEFYIVFFA   92 (527)
T ss_pred             CCcHHHHHHHHHHHCCCceEEEeC---C------ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHH
Confidence            567999999999999999999754   3      5799999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChh----hHhhcCccCCCCccEEEEecCCChhhhhHhhhcCce
Q 010455          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP----SILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS  197 (510)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  197 (510)
                      |+++|++++++++..+.+++.++++.++++.+++++....    ...+........+..++.......            
T Consensus        93 ~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  160 (527)
T TIGR02275        93 LLKLGIAPVLALFSHRKSELTAYAQQIEPALYIIDRAHSLFDYDAFARQLQSKLPTLRNIIVAGQTRV------------  160 (527)
T ss_pred             HHHcCeEEeccccccCHHHHHHHHHhcCCcEEEEcCcccccchHHHHHHHHhhCCcceEEEEecCCCC------------
Confidence            9999999999999999999999999999999999876421    111111111233344444332110            


Q ss_pred             eeeHHHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHH
Q 010455          198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAH  277 (510)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h  277 (510)
                      .......+.............++++++++|||||||.||+|.+||+++..++......+     .+..+|++++.+|++|
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~P~~h  235 (527)
T TIGR02275       161 EAELFLWLESPAEPVKFPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEIC-----WLTQQTRYLCALPAAH  235 (527)
T ss_pred             cchhhHHhhCcCccccCCCCCCCccEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhc-----CCCcCCEEEECCChHh
Confidence            00111111111111122345678999999999999999999999999999888877666     7888999999999999


Q ss_pred             HHHHHH--HHHHHhcCcEEEEeCC-CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhh
Q 010455          278 IYDQII--ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLG  354 (510)
Q Consensus       278 ~~g~~~--~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (510)
                      .+++..  .+.++..|+++++.+. ++..+++.++++++|++.++|.++..+++.....                     
T Consensus       236 ~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~---------------------  294 (527)
T TIGR02275       236 NYPLSSPGALGVFYAGGCVVLAPDPSPTDCFPLIERHKVTVTALVPPAVALWMQAASKS---------------------  294 (527)
T ss_pred             hhhhhHHHHHHHHhcCCeEEECCCCCHHHHHHHHHHhCCeEEEecHHHHHHHHhCcccc---------------------
Confidence            999763  6778999999988664 8999999999999999999999998876522110                     


Q ss_pred             hcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeeccccccccceecccCCCCcc
Q 010455          355 NMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNM  434 (510)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~~~~~~~~~~~~  434 (510)
                                      ..++        +++|.+++||++++.++.+++.+.+|.++++.||+||++.............
T Consensus       295 ----------------~~~~--------~~lr~~~~gG~~l~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~~  350 (527)
T TIGR02275       295 ----------------RYDL--------SSLKLLQVGGAKFSEAAARRVPAVFGCQLQQVFGMAEGLVNYTRLDDPAEII  350 (527)
T ss_pred             ----------------CCCc--------cceEEEEEcCCCCCHHHHHHHHHHhCCeEEeeeccCccCccccCCCCccccc
Confidence                            0111        2899999999999999999999988999999999999654332211111223


Q ss_pred             CCcccccc-CCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhh-ccCccccCCe-eeccCCccC
Q 010455          435 IGTVGVPM-TTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGKN-PWQYTFKKL  509 (510)
Q Consensus       435 ~~svG~p~-~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~gw~~TGDl-~~d~dG~~~  509 (510)
                      .+++|+|+ ++..++|+| ++++.++.|  +.|||+++|+.++.||+++++.+.+.| .||||+|||+ ++|+||++.
T Consensus       351 ~~~~G~~~~~~~~v~i~d-~~g~~~~~g--~~Gei~v~g~~~~~gY~~~~~~~~~~~~~dg~~~TGDl~~~~~~g~l~  425 (527)
T TIGR02275       351 FTTQGRPMSPDDEVRVVD-DHGNPVAPG--ETGMLLTRGPYTFRGYYKAPEHNAAAFDAEGFYYTGDLVRLTPEGYIV  425 (527)
T ss_pred             cccCCCCCCCCceEEEEC-CCCCCCCCC--CceEEEecCCccchhhcCChhHhHhhcCcCCCEEcCceEEEcCCccEE
Confidence            46899999 589999999 888777665  899999999999999999999998888 7899999999 999999754

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=3.2e-51  Score=428.43  Aligned_cols=403  Identities=25%  Similarity=0.366  Sum_probs=339.3

Q ss_pred             CCCCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHH
Q 010455           40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM  119 (510)
Q Consensus        40 ~~~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~  119 (510)
                      +.+.++.++|.++++.+|+++|+.+.   +      ..+||+||.++++++|+.|.+.|+++|++|+++++|+.++++++
T Consensus         3 ~~~~~l~~~l~~~~~~~p~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~g~~~~~~V~l~~~~~~~~~~~~   73 (521)
T PRK06187          3 DYPLTIGRILRHGARKHPDKEAVYFD---G------RRTTYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAY   73 (521)
T ss_pred             cccCCHHHHHHHHHHHCCCceEEEeC---C------ceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHH
Confidence            34679999999999999999999876   4      35999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCceee
Q 010455          120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCF  199 (510)
Q Consensus       120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  199 (510)
                      +||+++|++++++++..+.+++..+++.+++++++++......+.+... ....++.++..++....      .......
T Consensus        74 la~~~~G~~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~~~~~~~  146 (521)
T PRK06187         74 FAVPKIGAVLHPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLLAAILP-QLPTVRTVIVEGDGPAA------PLAPEVG  146 (521)
T ss_pred             HHHHHcCeEEEecccCCCHHHHHHHHHhcCCeEEEEcchHHHHHHHHhh-ccCCccEEEEecCcccc------ccccccc
Confidence            9999999999999999999999999999999999999887766654433 22445566666544310      1112345


Q ss_pred             eHHHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHH
Q 010455          200 SWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIY  279 (510)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~  279 (510)
                      .+.+++..............+++++++|||||||.||+|.++|.++..........+     ++..+|++++.+|++|.+
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~-----~~~~~d~~~~~~~~~~~~  221 (521)
T PRK06187        147 EYEELLAAASDTFDFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWL-----KLSRDDVYLVIVPMFHVH  221 (521)
T ss_pred             cHHHHhhcCCccCCCCCCCccceEEEEECCCCCCCCceEEeehHHHHHHHHHHHHhh-----CCCCCCEEEEeCCchHHh
Confidence            566666544333334455678899999999999999999999999999888877766     888999999999999999


Q ss_pred             HHHHHHHHHhcCcEEEEeCC-CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhccc
Q 010455          280 DQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKK  358 (510)
Q Consensus       280 g~~~~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (510)
                      ++...+.++..|+++++.+. ++..+++.++++++|+++++|+++..+++....                          
T Consensus       222 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~--------------------------  275 (521)
T PRK06187        222 AWGLPYLALMAGAKQVIPRRFDPENLLDLIETERVTFFFAVPTIWQMLLKAPRA--------------------------  275 (521)
T ss_pred             hHHHHHHHHHhCCEEEecCCCCHHHHHHHHHHhCCeEEEchHHHHHHHHcCcCC--------------------------
Confidence            99877779999999998875 899999999999999999999999998752110                          


Q ss_pred             CCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeeccccccccceecccCCCC-----c
Q 010455          359 GMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVF-----N  433 (510)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~~~~~~~~~~-----~  433 (510)
                                 ...++        .++|.+++||++++.++.+++.+.+++++++.||+||++.++........     .
T Consensus       276 -----------~~~~~--------~~l~~v~~~Ge~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~  336 (521)
T PRK06187        276 -----------YFVDF--------SSLRLVIYGGAALPPALLREFKEKFGIDLVQGYGMTETSPVVSVLPPEDQLPGQWT  336 (521)
T ss_pred             -----------CccCc--------chhhEEEEcCcCCCHHHHHHHHHHhCcchheeeccCccCcccccCCcccccccccc
Confidence                       11122        28999999999999999999999889999999999999877665543332     2


Q ss_pred             cCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhhccCccccCCe-eeccCCccC
Q 010455          434 MIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGKN-PWQYTFKKL  509 (510)
Q Consensus       434 ~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDl-~~d~dG~~~  509 (510)
                      ..+++|+|++++.++|+| +++.+++.+.++.|||+++|+.++.||+++++.+.+.|.+|||+|||+ ++|+||++.
T Consensus       337 ~~~~~G~~~~~~~~~i~~-~~~~~~~~~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~~~~tGD~~~~~~~g~~~  412 (521)
T PRK06187        337 KRRSAGRPLPGVEARIVD-DDGDELPPDGGEVGEIIVRGPWLMQGYWNRPEATAETIDGGWLHTGDVGYIDEDGYLY  412 (521)
T ss_pred             cCCccccccCCeEEEEEC-CCCCCCCCCCCCeeEEEEECcchhhhhcCCHHHHHHHhhCCceeccceEEEcCCCCEE
Confidence            458899999999999999 888888875569999999999999999999999999998899999999 999999753

>PRK09274 peptide synthase; Provisional

Probab=100.00  E-value=2.2e-51  Score=432.18  Aligned_cols=393  Identities=19%  Similarity=0.217  Sum_probs=303.9

Q ss_pred             CCCHHHHHHHHHhhCCCCcceeeeeccCCCC----CCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHH
Q 010455           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKV----GPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWII  117 (510)
Q Consensus        42 ~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~----~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~  117 (510)
                      ..++.++|.+.++++|+++|+++.   ++..    ..++.+||+||.++++++|++|.+.|+++||+|+++++|++++++
T Consensus         5 ~~~~~~~l~~~a~~~p~~~a~~~~---~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~g~~~gd~V~~~~~n~~~~~~   81 (552)
T PRK09274          5 MANIARHLPRAAQERPDQLAVAVP---GGRGADGKLAYDELSFAELDARSDAIAHGLNAAGIGRGMRAVLMVTPSLEFFA   81 (552)
T ss_pred             hhhHHHHHHHHHHhCCCcceEEec---cCCCCccccccCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCcHHHHH
Confidence            357889999999999999999875   3311    123479999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCC--ChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcC
Q 010455          118 AMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQEN--KIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELG  195 (510)
Q Consensus       118 ~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  195 (510)
                      ++|||+++|++++|++|.++.+++..+++.++++++|+++.  ....+....   ......++.++...          .
T Consensus        82 ~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~----------~  148 (552)
T PRK09274         82 LTFALFKAGAVPVLVDPGMGIKNLKQCLAEAQPDAFIGIPKAHLARRLFGWG---KPSVRRLVTVGGRL----------L  148 (552)
T ss_pred             HHHHHHHcCeEEEEcCCCccHHHHHHHHHhcCCCEEEeccHHHHHHHHhccC---ccchhheecccccc----------c
Confidence            99999999999999999999999999999999999999752  111111111   01222233322110          0


Q ss_pred             ceeeeHHHHHHcC-CCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecC
Q 010455          196 VSCFSWEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLP  274 (510)
Q Consensus       196 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p  274 (510)
                      .....++++.... ..........++++++++|||||||.||+|.++|+++...+......+     ++.++|+.++.+|
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~p  223 (552)
T PRK09274        149 WGGTTLATLLRDGAAAPFPMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDY-----GIEPGEIDLPTFP  223 (552)
T ss_pred             cCCccHHHhcccCccccCCCCCCCCCCeEEEEECCCCCCCCceEEecHHHHHHHHHHHHHHh-----CCCCCceeeeccC
Confidence            0112344443221 111222344678999999999999999999999999999988877776     7888999999999


Q ss_pred             hHHHHHHHHHHHHHhcCcEEEEeC--------CCHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHH
Q 010455          275 LAHIYDQIIETHCIHKGCSIGFWR--------GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFE  346 (510)
Q Consensus       275 l~h~~g~~~~l~~l~~G~~~v~~~--------~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~  346 (510)
                      ++|.+++       ..|+++++.+        .++..+++.++++++|+++++|+++..+++....              
T Consensus       224 l~~~~~~-------~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~--------------  282 (552)
T PRK09274        224 LFALFGP-------ALGMTSVIPDMDPTRPATVDPAKLFAAIERYGVTNLFGSPALLERLGRYGEA--------------  282 (552)
T ss_pred             HHHhhhh-------hhCCeEEecCcccccccccCHHHHHHHHHHcCCeEEeccHHHHHHHHHHhhh--------------
Confidence            9886543       4577777653        2789999999999999999999999998763211              


Q ss_pred             HHHHhhhhhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhc--CCCeeeeccccccccce
Q 010455          347 FAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS--GAPLTQGYGLTESCSGC  424 (510)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~--g~~l~~~yG~tE~~~~~  424 (510)
                                             +..++        ++||.+++||+++++++.+++++.+  |+++++.||+||++.++
T Consensus       283 -----------------------~~~~~--------~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~  331 (552)
T PRK09274        283 -----------------------NGIKL--------PSLRRVISAGAPVPIAVIERFRAMLPPDAEILTPYGATEALPIS  331 (552)
T ss_pred             -----------------------cCCCC--------chhhEEEecCCcCCHHHHHHHHHHcCCCceEEccccccccceeE
Confidence                                   01112        3899999999999999999999988  46999999999998766


Q ss_pred             ecccCC---------CCccCCccccccCCeEEEEeecC--------CCCcCCCCCCCcceEEEecCCccccccCCchhhh
Q 010455          425 FTSLAD---------VFNMIGTVGVPMTTVEARLESVP--------EMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTE  487 (510)
Q Consensus       425 ~~~~~~---------~~~~~~svG~p~~g~~i~ivd~~--------~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~  487 (510)
                      +.....         ......++|+|+|+++++|+|..        ++++++.  |+.|||+|+|++++.|||++++.+.
T Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~ivd~~~~~~~~~~~~~~~~~--g~~Gel~v~g~~~~~GY~~~~~~t~  409 (552)
T PRK09274        332 SIESREILFATRAATDNGAGICVGRPVDGVEVRIIAISDAPIPEWDDALRLAT--GEIGEIVVAGPMVTRSYYNRPEATR  409 (552)
T ss_pred             eecchhhhccccccccCCCCcccCccCCCceEEEEeccccccccccccccCCC--CCeeEEEEecCcccccccCChHHhh
Confidence            543221         01122478999999999999821        2344444  4899999999999999999999998


Q ss_pred             hhh---ccC--ccccCCe-eeccCCccC
Q 010455          488 EVI---VDG--WFHTGKN-PWQYTFKKL  509 (510)
Q Consensus       488 ~~~---~~g--w~~TGDl-~~d~dG~~~  509 (510)
                      ..|   .+|  ||+|||+ ++|+||++.
T Consensus       410 ~~~~~~~~g~~w~~TGDlg~~d~dG~l~  437 (552)
T PRK09274        410 LAKIPDGQGDVWHRMGDLGYLDAQGRLW  437 (552)
T ss_pred             hhhcccCCCCcEEEcCCEEEEccCCcEE
Confidence            876   366  9999999 999999864

>PRK10524 prpE propionyl-CoA synthetase; Provisional

Probab=100.00  E-value=3e-51  Score=437.24  Aligned_cols=409  Identities=16%  Similarity=0.171  Sum_probs=314.7

Q ss_pred             CCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHH
Q 010455           43 ESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC  122 (510)
Q Consensus        43 ~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA~  122 (510)
                      |...++|+++++.+|+++|+++.   +...+..+.+||+||.++++++|++|++.|+++||+|+++++|++++++++|||
T Consensus        53 n~~~~~l~~~~~~~p~~~A~~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~  129 (629)
T PRK10524         53 NLCHNAVDRHLAKRPEQLALIAV---STETDEERTYTFRQLHDEVNRMAAMLRSLGVQRGDRVLIYMPMIAEAAFAMLAC  129 (629)
T ss_pred             eHHHHHHHHhhccCCCCeEEEEE---cCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHH
Confidence            44688898888899999999876   433344578999999999999999999999999999999999999999999999


Q ss_pred             HhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCC---------hhhHhhcCccCCCCccEEEEecCCChhhhhHhhh
Q 010455          123 NSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENK---------IPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEE  193 (510)
Q Consensus       123 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  193 (510)
                      +++|++++|+++.++.+++..++++++++++|+++..         .+.+.++..........++.++......    ..
T Consensus       130 ~~~Gav~v~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~----~~  205 (629)
T PRK10524        130 ARIGAIHSVVFGGFASHSLAARIDDAKPVLIVSADAGSRGGKVVPYKPLLDEAIALAQHKPRHVLLVDRGLAPM----AR  205 (629)
T ss_pred             HHhCcEEEeeCCCCCHHHHHHHHHhcCCcEEEEccCcccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCc----Cc
Confidence            9999999999999999999999999999999997642         1222222221212344555554321100    00


Q ss_pred             cCceeeeHHHHHHcCC-CCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhh-hhhhhhhccccCCCCcEEEE
Q 010455          194 LGVSCFSWEEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLS-VDQMFVVTGKVCSEEDTYFS  271 (510)
Q Consensus       194 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~-~~~~~~~~~~~~~~~d~~~~  271 (510)
                      .......+.++..... .........++++++++|||||||.||||+++|.+++..... +...+     ++.++|++++
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~il~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~-----~~~~~d~~~~  280 (629)
T PRK10524        206 VAGRDVDYATLRAQHLGARVPVEWLESNEPSYILYTSGTTGKPKGVQRDTGGYAVALATSMDTIF-----GGKAGETFFC  280 (629)
T ss_pred             ccCCcccHHHHHhcCCCCCCCceeeCCCCceEEEeecCCCCCCceEEECCcHHHHHHHHHHHHhc-----CCCCCCEEEE
Confidence            0011234555543321 111222346789999999999999999999999997655443 23333     6788999999


Q ss_pred             ecChHHHHHHH-HHHHHHhcCcEEEEeCC-----CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHH
Q 010455          272 FLPLAHIYDQI-IETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLF  345 (510)
Q Consensus       272 ~~pl~h~~g~~-~~l~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~  345 (510)
                      ..|+.|..+.. .++.+++.|+++++.++     ++..+++.++++++|+++++|++++.+.+.-               
T Consensus       281 ~~~~~~~~~~~~~~~~~l~~G~~~v~~~g~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~---------------  345 (629)
T PRK10524        281 ASDIGWVVGHSYIVYAPLLAGMATIMYEGLPTRPDAGIWWRIVEKYKVNRMFSAPTAIRVLKKQD---------------  345 (629)
T ss_pred             cCCCCeeccchHHHHHHHhCCCEEEEECCCCCCCChHHHHHHHHHcCceEEEeCHHHHHHHHhcC---------------
Confidence            99999988865 47789999999998763     6889999999999999999999998875410               


Q ss_pred             HHHHHhhhhhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeecccccccccee
Q 010455          346 EFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCF  425 (510)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~~~  425 (510)
                                          ....+..+++        +||.+++||+++++++.+++.+.+++++++.||+||++..+.
T Consensus       346 --------------------~~~~~~~~l~--------~lr~i~~~Ge~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~  397 (629)
T PRK10524        346 --------------------PALLRKHDLS--------SLRALFLAGEPLDEPTASWISEALGVPVIDNYWQTETGWPIL  397 (629)
T ss_pred             --------------------cccccccChh--------heeEEEEeCCCCCHHHHHHHHHhcCCCeEeccccccccchhh
Confidence                                0011222333        899999999999999999999989999999999999984333


Q ss_pred             cccCC---CCccCCccccccCCeEEEEeecC-CCCcCCCCCCCcceEEEecC---CccccccCCchhhhhhh----ccCc
Q 010455          426 TSLAD---VFNMIGTVGVPMTTVEARLESVP-EMGYDALSSVPRGEICLRGN---TLFSGYYKRPDLTEEVI----VDGW  494 (510)
Q Consensus       426 ~~~~~---~~~~~~svG~p~~g~~i~ivd~~-~~~~~~~~~~~~Gei~v~g~---~v~~gY~~~~~~~~~~~----~~gw  494 (510)
                      .....   ....++++|+|++|++++|+| + +|++++.|  +.|||+++||   +++.|||++++.+.+.+    .+||
T Consensus       398 ~~~~~~~~~~~~~~~~G~p~~g~~~~i~d-~~~g~~~~~g--~~Gel~i~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~  474 (629)
T PRK10524        398 AIARGVEDRPTRLGSPGVPMYGYNVKLLN-EVTGEPCGPN--EKGVLVIEGPLPPGCMQTVWGDDDRFVKTYWSLFGRQV  474 (629)
T ss_pred             cCCCCcccCcCCCCCcccCcCCceEEEEe-CCCCCCCCCC--CcEEEEEcCCCChhhcCCccCChHHHHHhhhccCCCcE
Confidence            22221   122347899999999999999 6 88777655  8999999998   68899999998776654    3689


Q ss_pred             cccCCe-eeccCCccC
Q 010455          495 FHTGKN-PWQYTFKKL  509 (510)
Q Consensus       495 ~~TGDl-~~d~dG~~~  509 (510)
                      |+|||+ ++|+||++.
T Consensus       475 ~~TGDl~~~d~dG~l~  490 (629)
T PRK10524        475 YSTFDWGIRDADGYYF  490 (629)
T ss_pred             EEcCCcEEEcCCCcEE
Confidence            999999 999999865

>PRK07638 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.9e-51  Score=423.09  Aligned_cols=374  Identities=15%  Similarity=0.157  Sum_probs=309.3

Q ss_pred             CHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHHH
Q 010455           44 SPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACN  123 (510)
Q Consensus        44 sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA~~  123 (510)
                      ++.+.|+++++++|+++|+.+.   +      ..+||.||.++++++|++|.+.|. +|++|+++++|++++++++|||+
T Consensus         2 ~~~~~~~~~a~~~p~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~~~-~~~~v~i~~~~~~~~~~~~la~~   71 (487)
T PRK07638          2 GITKEYKKHASLQPNKIAIKEN---D------RVLTYKDWFESVCKVANWLNEKES-KNKTIAILLENRIEFLQLFAGAA   71 (487)
T ss_pred             ChHHHHHHHHHhCCCCeEEecC---C------cEeeHHHHHHHHHHHHHHHHHhCC-CCCEEEEEcCCCHHHHHHHHHHH
Confidence            5789999999999999999865   3      579999999999999999999985 89999999999999999999999


Q ss_pred             hcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCceeeeHHH
Q 010455          124 SQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEE  203 (510)
Q Consensus       124 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (510)
                      ++|++++|+++.++.+++..+++.++++++|++......+...       ...++...+                  +.+
T Consensus        72 ~~G~~~v~l~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~-------~~~~~~~~~------------------~~~  126 (487)
T PRK07638         72 MAGWTCVPLDIKWKQDELKERLAISNADMIVTERYKLNDLPDE-------EGRVIEIDE------------------WKR  126 (487)
T ss_pred             HcCeEEEecCccCCHHHHHHHHHhCCCCEEEEecccccchhhc-------cceEEEehh------------------hhh
Confidence            9999999999999999999999999999999998655433211       011222211                  111


Q ss_pred             HHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHH
Q 010455          204 FLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII  283 (510)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~  283 (510)
                      ................+++++++|||||||.||+|+++|++++..+......+     .+..+|+++...|++|..++..
T Consensus       127 ~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~d~~~~~~~l~~~~~l~~  201 (487)
T PRK07638        127 MIEKYLPTYAPIENVQNAPFYMGFTSGSTGKPKAFLRAQQSWLHSFDCNVHDF-----HMKREDSVLIAGTLVHSLFLYG  201 (487)
T ss_pred             hhhhccccccccccCCCCcEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhc-----CcCCCCEEEEeecchHHHHHHH
Confidence            11111111111122346789999999999999999999999999888777666     7889999999999999988777


Q ss_pred             HHHHHhcCcEEEEeCC-CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhcccCCCC
Q 010455          284 ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQ  362 (510)
Q Consensus       284 ~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (510)
                      .+.+++.|+++++.+. ++..+++.++++++|++.++|+++..+.+..                                
T Consensus       202 ~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~--------------------------------  249 (487)
T PRK07638        202 AISTLYVGQTVHLMRKFIPNQVLDKLETENISVMYTVPTMLESLYKEN--------------------------------  249 (487)
T ss_pred             HHHHHccCcEEEEcCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCc--------------------------------
Confidence            8889999999998765 8999999999999999999999999986520                                


Q ss_pred             CCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhc-CCCeeeeccccccccceecccCCCCccCCccccc
Q 010455          363 NKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVP  441 (510)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~-g~~l~~~yG~tE~~~~~~~~~~~~~~~~~svG~p  441 (510)
                          . .            ..+.+.++++|++++.++.+++.+.+ ++.+++.||+||++.++...........+++|+|
T Consensus       250 ----~-~------------~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~  312 (487)
T PRK07638        250 ----R-V------------IENKMKIISSGAKWEAEAKEKIKNIFPYAKLYEFYGASELSFVTALVDEESERRPNSVGRP  312 (487)
T ss_pred             ----C-c------------CCceeEEEEcCCCCCHHHHHHHHHHcCCCeEEEEecCCccCceEEecccccCCCCCCCCcc
Confidence                0 0            01455678889999999999999988 6889999999999987665543334445789999


Q ss_pred             cCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhhccCccccCCe-eeccCCccC
Q 010455          442 MTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGKN-PWQYTFKKL  509 (510)
Q Consensus       442 ~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDl-~~d~dG~~~  509 (510)
                      +++++++|+| ++|.+++.|  +.|||+|+|+.++.||+++++.+.+.+.+|||+|||+ ++|+||++.
T Consensus       313 ~~~~~~~i~d-~~g~~~~~g--~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~d~~g~l~  378 (487)
T PRK07638        313 FHNVQVRICN-EAGEEVQKG--EIGTVYVKSPQFFMGYIIGGVLARELNADGWMTVRDVGYEDEEGFIY  378 (487)
T ss_pred             cCCcEEEEEC-CCCCCCCCC--CCeEEEEecccceeeecCCHHHHhhhccCCcEecCccEeEcCCCeEE
Confidence            9999999999 888877665  8999999999999999999988877778999999999 999999864

>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase

Probab=100.00  E-value=1.1e-50  Score=425.49  Aligned_cols=398  Identities=21%  Similarity=0.230  Sum_probs=318.5

Q ss_pred             CCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHH
Q 010455           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (510)
Q Consensus        42 ~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA  121 (510)
                      ..++.+++++.++.+|+++|++..   +...+..+.+||+||.++++++|++|++.|+++|++|+++++|+++++++++|
T Consensus        21 ~~~~~~~~~~~~~~~p~~~a~~~~---~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la   97 (538)
T TIGR03208        21 DRTINDHFDAAVANCPDKPALTAY---RDGHGAVRRFSYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLA   97 (538)
T ss_pred             cCcHHHHHHHHHHHCCCceEEEee---cccCCCcceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence            368999999999999999999864   32222346899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChh----hHhhcCccCCCCccEEEEecCCChhhhhHhhhcCce
Q 010455          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP----SILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS  197 (510)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  197 (510)
                      |+++|++++|++|..+.+++.++++.++++++++++....    ...............++..+...             
T Consensus        98 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------  164 (538)
T TIGR03208        98 CARIGAVLNPLMPIFRERELSFMLNHADSKVFVVPSVFRGFDHAAMARELQSKLPALRQVVVIDGDG-------------  164 (538)
T ss_pred             HHhcCEEEeccCcccCHHHHHHHHHhcCCeEEEEccccccccHHHHHHHHhccCCcceEEEEecCCC-------------
Confidence            9999999999999999999999999999999999876421    11111112223444555554321             


Q ss_pred             eeeHHHHHHcCC-C--C-----CCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEE
Q 010455          198 CFSWEEFLQLGT-L--D-----CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTY  269 (510)
Q Consensus       198 ~~~~~~~~~~~~-~--~-----~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~  269 (510)
                      ...++.++.... .  .     .......++++++++|||||||.||+|+++|+++...+......+     .+..+|++
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~d~~  239 (538)
T TIGR03208       165 DDSFDRVLMTPERDDTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERL-----ELGGGDVI  239 (538)
T ss_pred             CcCHHHHhhccccccccccccccccCCCCCCCeEEEEECCCCCCCCcEEEeehHHHHHHHHHHHhhc-----CCCCCCeE
Confidence            112232222110 0  0     111234678999999999999999999999999999988877766     77889999


Q ss_pred             EEecChHHHHHHHH-HHHHHhcCcEEEEeCC-CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHH
Q 010455          270 FSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEF  347 (510)
Q Consensus       270 ~~~~pl~h~~g~~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~  347 (510)
                      ++.+|++|..++.. ++.+++.|+++++.+. ++..+++.++++++|++.++|.++..++.......             
T Consensus       240 l~~~pl~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~-------------  306 (538)
T TIGR03208       240 LMASPMAHQTGFMYGLMMPLILNATAVLQDIWNPARAAELIRETGVTFTMASTPFLTDLCRAVKESG-------------  306 (538)
T ss_pred             EEeCCchhHHHHHHHHHHHHHcCCEEEecCccCHHHHHHHHHHhCCeEEecCHHHHHHHHhchhccC-------------
Confidence            99999999998764 7789999999988765 89999999999999999999999988765221100             


Q ss_pred             HHHhhhhhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeeccccccccceecc
Q 010455          348 AYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTS  427 (510)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~~~~~  427 (510)
                                              .++        +++|.+++||+++++++.+++.+.+|+.+++.||+||++.+++..
T Consensus       307 ------------------------~~~--------~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~  354 (538)
T TIGR03208       307 ------------------------APV--------PSLFTFLCAGAPIPGILVERAWELLGALIVSAWGMTENGAVTVTE  354 (538)
T ss_pred             ------------------------CCC--------CcceEEEEcCCCCCHHHHHHHHHHcCCeEEeeeccCcCCCccccC
Confidence                                    011        279999999999999999999888899999999999998766544


Q ss_pred             cCCC-CccCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhhccCccccCCe-eeccC
Q 010455          428 LADV-FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGKN-PWQYT  505 (510)
Q Consensus       428 ~~~~-~~~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDl-~~d~d  505 (510)
                      .... .....++|+|++|++++|+| +++.+++.|  +.|||+++|+.++.||+++++.+.. ..+|||+|||+ ++|+|
T Consensus       355 ~~~~~~~~~~~~G~~~~g~~v~i~~-~~~~~~~~g--~~Gel~v~g~~~~~gy~~~~~~~~~-~~~~~~~TGD~~~~~~~  430 (538)
T TIGR03208       355 PDDALEKASTTDGRPLPGVEVKVID-ANGAKLSQG--ETGRLLVRGCSNFGGYLKRPHLNST-DAEGWFDTGDLAFQDAE  430 (538)
T ss_pred             cccchhhccCcccccCCCCEEEEEC-CCCCCCcCC--CCcEEEEecCcccccccCCcccccc-cCCCceeccceEEECCC
Confidence            3322 12236789999999999999 888777655  8999999999999999999987642 36899999999 99999


Q ss_pred             CccC
Q 010455          506 FKKL  509 (510)
Q Consensus       506 G~~~  509 (510)
                      |++.
T Consensus       431 g~l~  434 (538)
T TIGR03208       431 GYIR  434 (538)
T ss_pred             CcEE
Confidence            9764

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.

>PRK06839 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.2e-51  Score=424.88  Aligned_cols=382  Identities=23%  Similarity=0.314  Sum_probs=313.7

Q ss_pred             CCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHh-CCCCCCCEEEEEcCCchhHHHHHHH
Q 010455           43 ESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRS-RGVNPGDRCGIYGSNCPEWIIAMEA  121 (510)
Q Consensus        43 ~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~-~gv~~gd~Vai~~~ns~~~~~~~lA  121 (510)
                      ..+.+.|+++|+.+|+++|+++.   +      +.+||+||.++++++|++|++ .|+++|++|+++++|+++++++++|
T Consensus         2 ~~~~~~~~~~a~~~p~~~a~~~~---~------~~~ty~~l~~~~~~la~~L~~~~g~~~~~~V~i~~~~~~~~~~~~la   72 (496)
T PRK06839          2 QGIAYWIEKRAYLHPDRIAIITE---E------EEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFA   72 (496)
T ss_pred             ccHHHHHHHHHHHCCCCeEEEEC---C------ceEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHH
Confidence            46889999999999999999864   3      689999999999999999985 6999999999999999999999999


Q ss_pred             HHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCceeeeH
Q 010455          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW  201 (510)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  201 (510)
                      |+++|++++|+++..+.+++..+++.++++.++++++....+.+... . .....++.+.+                  +
T Consensus        73 ~~~~G~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~-~-~~~~~~~~~~~------------------~  132 (496)
T PRK06839         73 IAKVECIAVPLNIRLTENELIFQLKDSGTTVLFVEKTFQNMALSMQK-V-SYVQRVISITS------------------L  132 (496)
T ss_pred             HHhcCcEEEecCcccCHHHHHHHHHhcCceEEEEcHHHHHHHHHhhh-c-cCcceEEEecc------------------h
Confidence            99999999999999999999999999999999998776554433221 1 11222332221                  2


Q ss_pred             HHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHH
Q 010455          202 EEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ  281 (510)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~  281 (510)
                      +++....  ........++++++++|||||||.||+|.++|+++..........+     .+..+|+++..+|++|..|+
T Consensus       133 ~~~~~~~--~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~g~  205 (496)
T PRK06839        133 KEIEDRK--IDNFVEKNESASFIICYTSGTTGKPKGAVLTQENMFWNALNNTFAI-----DLTMHDRSIVLLPLFHIGGI  205 (496)
T ss_pred             HhhhccC--CCCCCCCCCCCcEEEEeCCCCCCCCcEEEEEhHHHHHHHHHHHHHc-----CCCCCCeEEEeeCCcchhhH
Confidence            2222211  1122334568899999999999999999999999987766655555     67889999999999999998


Q ss_pred             HH-HHHHHhcCcEEEEeCC-CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhcccC
Q 010455          282 II-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKG  359 (510)
Q Consensus       282 ~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (510)
                      .. .+.++..|+++++.+. ++..+++.++++++|++.++|.+++.++....                            
T Consensus       206 ~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~----------------------------  257 (496)
T PRK06839        206 GLFAFPTLFAGGVIIVPRKFEPTKALSMIEKHKVTVVMGVPTIHQALINCSK----------------------------  257 (496)
T ss_pred             HHHHHHHHhcCcEEEEccCCCHHHHHHHHHhhCCeEEEehHHHHHHHHhCcc----------------------------
Confidence            75 5678999999988765 99999999999999999999999999875211                            


Q ss_pred             CCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeeccccccccceecccC-CCCccCCcc
Q 010455          360 MPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLA-DVFNMIGTV  438 (510)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~~~~~~~-~~~~~~~sv  438 (510)
                               ....++        .++|.+++||+++++++.+.+++. |+++.+.||+||++..++.... ......+++
T Consensus       258 ---------~~~~~~--------~~lr~~~~gG~~~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~  319 (496)
T PRK06839        258 ---------FETTNL--------QSVRWFYNGGAPCPEELMREFIDR-GFLFGQGFGMTETSPTVFMLSEEDARRKVGSI  319 (496)
T ss_pred             ---------cccCCC--------cccceEEECCCCCCHHHHHHHHHh-CCeeEeeccCCCCCcceEecccccccccCCCC
Confidence                     111112        289999999999999999999887 9999999999999875543322 223345899


Q ss_pred             ccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhhccCccccCCe-eeccCCccC
Q 010455          439 GVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGKN-PWQYTFKKL  509 (510)
Q Consensus       439 G~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDl-~~d~dG~~~  509 (510)
                      |+|+++++++|+| ++++.++.|  +.|||+|+|+.++.||+++++.+...+.+|||+|||+ ++|+||++.
T Consensus       320 G~p~~~~~~~i~d-~~~~~~~~g--~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~  388 (496)
T PRK06839        320 GKPVLFCDYELID-ENKNKVEVG--EVGELLIRGPNVMKEYWNRPDATEETIQDGWLCTGDLARVDEDGFVY  388 (496)
T ss_pred             cccCCCceEEEEC-CCcCCCCCC--CceEEEEECCCcchhhcCChHHHHHHHcCCCeeecceEEEcCCCcEE
Confidence            9999999999999 888876655  8999999999999999999999988889999999999 999999764

>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated

Probab=100.00  E-value=9.5e-51  Score=424.22  Aligned_cols=402  Identities=20%  Similarity=0.268  Sum_probs=320.6

Q ss_pred             CCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHH
Q 010455           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (510)
Q Consensus        42 ~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA  121 (510)
                      .+++.++|+++++++|+++|+++.   +. .+.++.+||.||.++++++|++|.++|+++||+|+++++|+.+++++++|
T Consensus         6 ~~~l~~~~~~~a~~~p~~~a~~~~---~~-~~~~~~~ty~~l~~~v~~la~~L~~~g~~~~~~v~i~~~n~~~~~~~~la   81 (517)
T PRK08008          6 GQHLRQMWDDLADVYGHKTALIFE---SS-GGVVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFG   81 (517)
T ss_pred             cccHHHHHHHHHHHCCCceEEEcc---cC-CCccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence            468999999999999999999876   42 33447899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCceeeeH
Q 010455          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW  201 (510)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  201 (510)
                      |+++|++++++++..+.+++.++++.++++.+|++++....+.+.........+.++........        .....++
T Consensus        82 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~  153 (517)
T PRK08008         82 LAKIGAIMVPINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQEDATPLRHICLTRVALPA--------DDGVSSF  153 (517)
T ss_pred             HHHcCeEEEEcCcccCHHHHHHHHHhcCceEEEEecchhHHHHHHHhhccccCcEEEEecCCCcc--------cccccCH
Confidence            99999999999999999999999999999999999987766655443333344555554432110        0113344


Q ss_pred             HHHHHcCC-CCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHH
Q 010455          202 EEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD  280 (510)
Q Consensus       202 ~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g  280 (510)
                      +++..... .........++++++++|||||||.||+|.++|+++...........     .+..++++++.+|++|..+
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~~  228 (517)
T PRK08008        154 TQLKAQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQC-----ALRDDDVYLTVMPAFHIDC  228 (517)
T ss_pred             HHHhccCCccccccCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHhhhc-----CCCCCCeEEEecCcHHHHH
Confidence            44433221 11122334568999999999999999999999999986544322222     5678899999999999877


Q ss_pred             HHH-HHHHHhcCcEEEEeCC-CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhccc
Q 010455          281 QII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKK  358 (510)
Q Consensus       281 ~~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (510)
                      ... ++.++..|+++++.+. ++..+++.++++++|++.++|.+++.++....                           
T Consensus       229 ~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~---------------------------  281 (517)
T PRK08008        229 QCTAAMAAFSAGATFVLLEKYSARAFWGQVCKYRATITECIPMMIRTLMVQPP---------------------------  281 (517)
T ss_pred             HHHHHHHHHhcCcEEEEccccCHHHHHHHHHHcCCcEEechHHHHHHHHhCCC---------------------------
Confidence            664 7779999999999875 89999999999999999999999988764100                           


Q ss_pred             CCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeeccccccccceecccCCCCccCCcc
Q 010455          359 GMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTV  438 (510)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~~~~~~~~~~~~~~sv  438 (510)
                             .+   ....        .+++.+++++ +++.+..+.+.+.+|+++++.||+||++..++..........+++
T Consensus       282 -------~~---~~~~--------~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~  342 (517)
T PRK08008        282 -------SA---NDRQ--------HCLREVMFYL-NLSDQEKDAFEERFGVRLLTSYGMTETIVGIIGDRPGDKRRWPSI  342 (517)
T ss_pred             -------cc---cccc--------ccceeeEEec-CCCHHHHHHHHHHhCCeEEeeccccccccccccCCccccccCCcc
Confidence                   00   0001        2577776654 788888888888889999999999999876554443333344789


Q ss_pred             ccccCCeEEEEeecCCCCcCCCCCCCcceEEEec---CCccccccCCchhhhhhh-ccCccccCCe-eeccCCccC
Q 010455          439 GVPMTTVEARLESVPEMGYDALSSVPRGEICLRG---NTLFSGYYKRPDLTEEVI-VDGWFHTGKN-PWQYTFKKL  509 (510)
Q Consensus       439 G~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g---~~v~~gY~~~~~~~~~~~-~~gw~~TGDl-~~d~dG~~~  509 (510)
                      |+|+++++++|+| +++++++.|  +.|||+++|   ++++.||+++++.+.+.| .+|||+|||+ ++|+||++.
T Consensus       343 G~~~~g~~~~i~d-~~~~~~~~g--~~Gel~v~g~~~~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~  415 (517)
T PRK08008        343 GRPGFCYEAEIRD-DHNRPLPAG--EIGEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTGDTGYVDEEGFFY  415 (517)
T ss_pred             ccCCCCcEEEEEC-CCCCCCCCC--CcceEEEeCCCCcchhhhHhCChHHHhhcccCCCCeeccceEEECCCCcEE
Confidence            9999999999999 888777766  899999998   689999999999999999 7999999999 999999864

>PLN02330 4-coumarate--CoA ligase-like 1

Probab=100.00  E-value=9.6e-51  Score=426.53  Aligned_cols=413  Identities=20%  Similarity=0.281  Sum_probs=321.9

Q ss_pred             CCCCccccccccCCCCCCCCCCCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCC
Q 010455           21 SGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVN  100 (510)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~  100 (510)
                      ....+|++.++....    +...|+.++|.++++++|+++|+.+.   .+.    +.+||.||.++++++|+.|.+.|++
T Consensus        10 ~~~~~~~~~~~~~~~----~~~~~~~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~~l~~~~~~la~~L~~~g~~   78 (546)
T PLN02330         10 DNEHIFRSRYPSVPV----PDKLTLPDFVLQDAELYADKVAFVEA---VTG----KAVTYGEVVRDTRRFAKALRSLGLR   78 (546)
T ss_pred             ccceeeccCCCCCCC----CCCCcHHHHHhhhhhcCCCccEEEec---CCC----CcccHHHHHHHHHHHHHHHHHhCCC
Confidence            344566766655322    23578999999999999999999753   221    5799999999999999999999999


Q ss_pred             CCCEEEEEcCCchhHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEe
Q 010455          101 PGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSF  180 (510)
Q Consensus       101 ~gd~Vai~~~ns~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~  180 (510)
                      +|++|+++++|+++++++++||+++|++++|+++..+.+++..+++.++++++|+++.....+....      . .++.+
T Consensus        79 ~g~~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~------~-~~i~~  151 (546)
T PLN02330         79 KGQVVVVVLPNVAEYGIVALGIMAAGGVFSGANPTALESEIKKQAEAAGAKLIVTNDTNYGKVKGLG------L-PVIVL  151 (546)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHhCcEeccCCccCCHHHHHHHHHhcCCeEEEEccchhhhHhhcC------C-cEEEe
Confidence            9999999999999999999999999999999999999999999999999999999988766553321      1 12333


Q ss_pred             cCCChhhhhHhhhcCceeeeHHHHHHcCCC---CCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhh
Q 010455          181 ANVSSSQKKEAEELGVSCFSWEEFLQLGTL---DCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV  257 (510)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~  257 (510)
                      +....          .....+.+++.....   ........++++++++|||||||.||+|.++|+++..++....... 
T Consensus       152 ~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~-  220 (546)
T PLN02330        152 GEEKI----------EGAVNWKELLEAADRAGDTSDNEEILQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSV-  220 (546)
T ss_pred             cCCCC----------CCcccHHHHHhhccccCcccccccCCcccEEEEEeCCCCcCCCcEEEEehHHHHHHHHHHhhcc-
Confidence            22110          012335555433211   1112334568899999999999999999999999988765422111 


Q ss_pred             hccccCCCCcEEEEecChHHHHHHHH-HHHHHhcCcEEEEeCC-CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhh
Q 010455          258 VTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKIS  335 (510)
Q Consensus       258 ~~~~~~~~~d~~~~~~pl~h~~g~~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~  335 (510)
                        .......++.+.++|++|.+++.. ++.++..|+++++.+. ++..+++.++++++|++.++|+++..++..      
T Consensus       221 --~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~------  292 (546)
T PLN02330        221 --GPEMIGQVVTLGLIPFFHIYGITGICCATLRNKGKVVVMSRFELRTFLNALITQEVSFAPIVPPIILNLVKN------  292 (546)
T ss_pred             --CccccCceEEEEecChHHHHHHHHHHHHHhhcCCEEEEecccCHHHHHHHHHHcCCeeeecCCHHHHHHHhC------
Confidence              112234578999999999999874 6778999999988765 999999999999999999999999988641      


Q ss_pred             ccChhHHHHHHHHHHhhhhhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhc-CCCeeee
Q 010455          336 SGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQG  414 (510)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~-g~~l~~~  414 (510)
                                                     +..+.+++..      .++|.+++||+++++++.+++.+.+ |+++++.
T Consensus       293 -------------------------------~~~~~~~~~~------~~l~~i~~~g~~l~~~~~~~~~~~~~~~~~~~~  335 (546)
T PLN02330        293 -------------------------------PIVEEFDLSK------LKLQAIMTAAAPLAPELLTAFEAKFPGVQVQEA  335 (546)
T ss_pred             -------------------------------ccccccccch------heeeeEEEcCCcCCHHHHHHHHHHcCCCeEEec
Confidence                                           1111122211      1589999999999999999999988 8999999


Q ss_pred             ccccccccceeccc-CCC---CccCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhh
Q 010455          415 YGLTESCSGCFTSL-ADV---FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI  490 (510)
Q Consensus       415 yG~tE~~~~~~~~~-~~~---~~~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~  490 (510)
                      ||+||++.+..... ...   ....+++|+|+|+++++|+|.+++++++.|  +.|||+|+|+.++.||+++++.+.+.+
T Consensus       336 YG~tE~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~~~~~p~g--~~Gel~v~g~~~~~gy~~~~~~~~~~~  413 (546)
T PLN02330        336 YGLTEHSCITLTHGDPEKGHGIAKKNSVGFILPNLEVKFIDPDTGRSLPKN--TPGELCVRSQCVMQGYYNNKEETDRTI  413 (546)
T ss_pred             ccccccccceecCCCccccccccccCccccccCCcEEEEEeCCCCccCCCC--CceEEEEecchhhhhhccCccchhhhc
Confidence            99999976543321 111   122368999999999999994556666665  899999999999999999999998888


Q ss_pred             -ccCccccCCe-eeccCCccC
Q 010455          491 -VDGWFHTGKN-PWQYTFKKL  509 (510)
Q Consensus       491 -~~gw~~TGDl-~~d~dG~~~  509 (510)
                       .+|||+|||+ ++|+||++.
T Consensus       414 ~~~g~~~TGD~~~~~~dG~l~  434 (546)
T PLN02330        414 DEDGWLHTGDIGYIDDDGDIF  434 (546)
T ss_pred             cCCCceecccEEEEeCCCcEE
Confidence             7899999999 999999764

>PRK05605 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=9.9e-51  Score=429.07  Aligned_cols=406  Identities=25%  Similarity=0.389  Sum_probs=319.5

Q ss_pred             CCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHH
Q 010455           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (510)
Q Consensus        42 ~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA  121 (510)
                      ..++.++++++++++|+++|+.+.   +      +.+||.||.++++++|+.|.+.|+++||+|+++++|+++++++++|
T Consensus        31 ~~~l~~~~~~~~~~~p~~~a~~~~---~------~~~Ty~ql~~~~~~~A~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA  101 (573)
T PRK05605         31 DTTLVDLYDNAVARFGDRPALDFF---G------ATTTYAELGKQVRRAAAGLRALGVRPGDRVAIVLPNCPQHIVAFYA  101 (573)
T ss_pred             cCCHHHHHHHHHHHCCCCeEEEeC---C------CcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHH
Confidence            458999999999999999999875   3      4699999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCCh---hhhhH--------
Q 010455          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSS---SQKKE--------  190 (510)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~--------  190 (510)
                      |+++|++++|++|.++.+++.++++.++++++|++++....+.+....  .....++..+....   .....        
T Consensus       102 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  179 (573)
T PRK05605        102 VLRLGAVVVEHNPLYTAHELEHPFEDHGARVAIVWDKVAPTVERLRRT--TPLETIVSVNMIAAMPLLQRLALRLPIPAL  179 (573)
T ss_pred             HHhcCcEEeecCcCCCHHHHHHHHhccCCcEEEechhhHHHHHhhhhc--cccceeEeeecccccccccccccccccccc
Confidence            999999999999999999999999999999999988766554333221  12223333221100   00000        


Q ss_pred             ------hhhcCceeeeHHHHHHcCCCC----CCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhcc
Q 010455          191 ------AEELGVSCFSWEEFLQLGTLD----CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTG  260 (510)
Q Consensus       191 ------~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~  260 (510)
                            ..........|+++.......    .......++++++++|||||||.||+|.+||+++...+......+.   
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~---  256 (573)
T PRK05605        180 RKARAALTGPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWVP---  256 (573)
T ss_pred             cccccccccCCCcceeHHHHhhccccccccccCCCCCCCCCEEEEEcCCCCCCCCcEEEEecHHHHHHHHHHHhhcc---
Confidence                  000011233566554432111    1223345789999999999999999999999999887765433320   


Q ss_pred             ccCCCCcEEEEecChHHHHHHHH-HHHHHhcCcEEEEeCC-CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccC
Q 010455          261 KVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGG  338 (510)
Q Consensus       261 ~~~~~~d~~~~~~pl~h~~g~~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~  338 (510)
                      .....+|++++.+|++|.+|+.. ++.+++.|+++++.+. ++..+++.++++++|++.++|.+++.+++....      
T Consensus       257 ~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~------  330 (573)
T PRK05605        257 GLGDGPERVLAALPMFHAYGLTLCLTLAVSIGGELVLLPAPDIDLILDAMKKHPPTWLPGVPPLYEKIAEAAEE------  330 (573)
T ss_pred             ccCCCCcEEEEecChHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCEEEEchHHHHHHHHhCccc------
Confidence            01234789999999999999865 6668999999988775 999999999999999999999999998752210      


Q ss_pred             hhHHHHHHHHHHhhhhhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeecccc
Q 010455          339 ALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLT  418 (510)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~t  418 (510)
                                                     ...++        ++||.+++||+++++++.+.+.+.++..+++.||+|
T Consensus       331 -------------------------------~~~~~--------~~lr~i~~gg~~l~~~~~~~~~~~~~~~i~~~YG~T  371 (573)
T PRK05605        331 -------------------------------RGVDL--------SGVRNAFSGAMALPVSTVELWEKLTGGLLVEGYGLT  371 (573)
T ss_pred             -------------------------------cCCCc--------hhccEEEECCCcCCHHHHHHHHHHhCCCeecccccc
Confidence                                           11112        279999999999999999999988899999999999


Q ss_pred             ccccceecccCCCCccCCccccccCCeEEEEeecCCC--CcCCCCCCCcceEEEecCCccccccCCchhhhhhhccCccc
Q 010455          419 ESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEM--GYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFH  496 (510)
Q Consensus       419 E~~~~~~~~~~~~~~~~~svG~p~~g~~i~ivd~~~~--~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~gw~~  496 (510)
                      |++.++..........++++|+|++++.++|+| +++  ..++.  ++.|||+++|+.++.||+++++.+.+.|.+|||+
T Consensus       372 E~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~~~--g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~  448 (573)
T PRK05605        372 ETSPIIVGNPMSDDRRPGYVGVPFPDTEVRIVD-PEDPDETMPD--GEEGELLVRGPQVFKGYWNRPEETAKSFLDGWFR  448 (573)
T ss_pred             hhchhhhcCCcccCCcCCccccCCCCCEEEEEc-CCCCCccCCC--CCeeEEEEecCchhhhhcCChhHhhhcccCCCcc
Confidence            998776655444334457899999999999999 554  44444  4899999999999999999999999999889999


Q ss_pred             cCCe-eeccCCccC
Q 010455          497 TGKN-PWQYTFKKL  509 (510)
Q Consensus       497 TGDl-~~d~dG~~~  509 (510)
                      |||+ ++|++|++.
T Consensus       449 TGD~~~~~~~g~l~  462 (573)
T PRK05605        449 TGDVVVMEEDGFIR  462 (573)
T ss_pred             cCCEEEEcCCCcEE
Confidence            9999 999999764

>PRK08316 acyl-CoA synthetase; Validated

Probab=100.00  E-value=9.6e-51  Score=425.00  Aligned_cols=398  Identities=24%  Similarity=0.316  Sum_probs=326.5

Q ss_pred             CCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHH
Q 010455           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (510)
Q Consensus        42 ~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA  121 (510)
                      ..++.++|.+.++++|+++|+++.   +      +.+||+||.+++.++|..|.+.|+++||+|+++++|+++++++++|
T Consensus        10 ~~~l~~~l~~~a~~~~~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~gi~~~~~V~l~~~~~~~~~~~~~a   80 (523)
T PRK08316         10 RQTIGDILRRSARRYPDKTALVFG---D------RSWTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWLA   80 (523)
T ss_pred             CCCHHHHHHHHHHHCCCCeEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence            578999999999999999999875   4      5799999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCceeeeH
Q 010455          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW  201 (510)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  201 (510)
                      |+++|++++|+++..+.+++..+++.+++++++++.+....+.+......  ...........      .......+..+
T Consensus        81 ~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~--~~~~~~~~~~~------~~~~~~~~~~~  152 (523)
T PRK08316         81 CARAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPALAPTAEAALALLP--VDTLILSLVLG------GREAPGGWLDF  152 (523)
T ss_pred             HHhcCcEEEecccccCHHHHHHHHHhCCCCEEEEccchHHHHHHHhhhcC--ccceeeeeccc------ccccccchhhH
Confidence            99999999999999999999999999999999999887776654432221  11111100000      00011123445


Q ss_pred             HHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHH
Q 010455          202 EEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ  281 (510)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~  281 (510)
                      .++.+.............+++++++|||||||.||+|.++|++++.........+     ++..+|+++..+|++|..++
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~p~~h~~g~  227 (523)
T PRK08316        153 ADWAEAGSVAEPDVELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVAG-----DMSADDIPLHALPLYHCAQL  227 (523)
T ss_pred             HHHHhcCCCccCccCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHHh-----CCCCCceEEEccCCchhhhH
Confidence            5554433222233445678999999999999999999999999998888776666     78899999999999999998


Q ss_pred             HH-HHHHHhcCcEEEEeCC-CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhcccC
Q 010455          282 II-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKG  359 (510)
Q Consensus       282 ~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (510)
                      .. ++.++..|+++++.+. ++..+++.++++++|++.++|.++..+++.                              
T Consensus       228 ~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~------------------------------  277 (523)
T PRK08316        228 DVFLGPYLYVGATNVILDAPDPELILRTIEAERITSFFAPPTVWISLLRH------------------------------  277 (523)
T ss_pred             HHHHHHHHhcCceEEEecCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHcC------------------------------
Confidence            75 5557899999999864 999999999999999999999999887641                              


Q ss_pred             CCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhc-CCCeeeeccccccccceecccCC-CCccCCc
Q 010455          360 MPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESCSGCFTSLAD-VFNMIGT  437 (510)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~-g~~l~~~yG~tE~~~~~~~~~~~-~~~~~~s  437 (510)
                             ...+..+++        ++|.+++||++++.++.+.+++.+ ++.+++.||+||++.+++..... .....++
T Consensus       278 -------~~~~~~~~~--------~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~  342 (523)
T PRK08316        278 -------PDFDTRDLS--------SLRKGYYGASIMPVEVLKELRERLPGLRFYNCYGQTEIAPLATVLGPEEHLRRPGS  342 (523)
T ss_pred             -------cccccCCcc--------cceEEEEcCCcCCHHHHHHHHHHcCCCceeeeecccccCccccccCccccccccCC
Confidence                   111112222        899999999999999999999987 78999999999998876654332 2233478


Q ss_pred             cccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhhccCccccCCe-eeccCCccC
Q 010455          438 VGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGKN-PWQYTFKKL  509 (510)
Q Consensus       438 vG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDl-~~d~dG~~~  509 (510)
                      +|+|+++++++|+| +++.+++.+  +.|||+++|+.++.||+++++.+.+.|.+|||+|||+ ++|+||++.
T Consensus       343 ~G~~~~~~~~~i~~-~~~~~~~~g--~~Gei~v~~~~~~~~y~~~~~~~~~~~~~~~~~TGDl~~~~~~g~l~  412 (523)
T PRK08316        343 AGRPVLNVETRVVD-DDGNDVAPG--EVGEIVHRSPQLMLGYWDDPEKTAEAFRGGWFHSGDLGVMDEEGYIT  412 (523)
T ss_pred             cccCCCCcEEEEEc-CCCCCCCCC--CcceEEEECCchhhhhcCCHHHHHHHhhCCCeeccceEEEcCCceEE
Confidence            99999999999999 888877776  8999999999999999999999999999999999999 999999864

>PRK07769 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=3.3e-51  Score=436.86  Aligned_cols=397  Identities=18%  Similarity=0.167  Sum_probs=305.8

Q ss_pred             CCCCCHHHHHHHHHhhCCCCcceeeeeccCC---CCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHH
Q 010455           40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDG---KVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWI  116 (510)
Q Consensus        40 ~~~~sl~~~l~~~a~~~p~~~a~~~~~~~~~---~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~  116 (510)
                      ....++.++|+++++.+|+++|+++.   +.   ..+..+.+||+||.++++++|++|.+. +++||+|+++++|+++++
T Consensus        18 ~~~~~l~~~l~~~a~~~~~~~a~~~~---~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~-~~~gd~V~i~~~n~~e~~   93 (631)
T PRK07769         18 PPNTNLVRHVERWAKVRGDKLAYRFL---DFSTERDGVARDLTWSQFGARNRAVGARLQQV-TKPGDRVAILAPQNLDYL   93 (631)
T ss_pred             cccCCHHHHHHHHHHhCCCCeEEEEe---ccCCCCCCceeEeeHHHHHHHHHHHHHHHHHh-cCCCCEEEEEcCCChHHH
Confidence            34468999999999999999999875   31   123346899999999999999999987 899999999999999999


Q ss_pred             HHHHHHHhcCCeEEEe-cCCCC--HHHHHHHHHhcCccEEEEcCCChhhHhhcCccCC-CCccEEEEecCCChhhhhHhh
Q 010455          117 IAMEACNSQAITYVPL-YDTLG--ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCC-LYLKTIVSFANVSSSQKKEAE  192 (510)
Q Consensus       117 ~~~lA~~~~G~~~v~l-~~~~~--~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~  192 (510)
                      +++|||+++|++++|+ ++..+  .+++.++++.++++++|++++....+.+...... .....++..+....       
T Consensus        94 ~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  166 (631)
T PRK07769         94 IAFFGALYAGRIAVPLFDPAEPGHVGRLHAVLDDCTPSAILTTTDSAEGVRKFFRARPAKERPRVIAVDAVPD-------  166 (631)
T ss_pred             HHHHHHHHcCCEEEeeCCCCccchHHHHHHHHHhCCCCEEEEChHHHHHHHHHHhhccccccceEEEcccccc-------
Confidence            9999999999999999 45554  6789999999999999998876554433211110 01122332221100       


Q ss_pred             hcCceeeeHHHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEe
Q 010455          193 ELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSF  272 (510)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~  272 (510)
                                 ..   ..........++++++|+|||||||.||||++||+++...+......+     ++..+|+++++
T Consensus       167 -----------~~---~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~  227 (631)
T PRK07769        167 -----------EV---GATWVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDAL-----EGQEGDRGVSW  227 (631)
T ss_pred             -----------cc---ccccCCCCCCCCCeEEEEeCCCCCCCCcEEEEcHHHHHHHHHHHHHHc-----CCCCcceEEEe
Confidence                       00   000111234578999999999999999999999999998888776666     77889999999


Q ss_pred             cChHHHHHHHHHHHHHhcCcEEEEeCC-----CHhhHHHHHhhhcC---cEEEeccHHHHHHHHHHHHHhhccChhHHHH
Q 010455          273 LPLAHIYDQIIETHCIHKGCSIGFWRG-----DVRYLMEDIQELKP---TMFSGVPRVYDRIYTGISNKISSGGALSKKL  344 (510)
Q Consensus       273 ~pl~h~~g~~~~l~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~---t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~  344 (510)
                      +|++|.+|+...+.+++.|+++++...     ++..+++.++++++   +++.++|.++..++....  ..         
T Consensus       228 ~Pl~h~~gl~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~l~~~~~--~~---------  296 (631)
T PRK07769        228 LPFFHDMGLITVLLPALLGHYITFMSPAAFVRRPGRWIRELARKPGGTGGTFSAAPNFAFEHAAARG--LP---------  296 (631)
T ss_pred             CCCcCchhhHHHHHHHhhCCeEEEEChHHHHhCHHHHHHHHHhhccccCceEeeCCchHHHHHHhhc--cc---------
Confidence            999999999877778888999988742     88899999999886   789999998877653100  00         


Q ss_pred             HHHHHHhhhhhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhc---CC---Ceeeecccc
Q 010455          345 FEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS---GA---PLTQGYGLT  418 (510)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~---g~---~l~~~yG~t  418 (510)
                                           .......+++        +||.+++||+++++++.++|.+.|   |+   .+++.||+|
T Consensus       297 ---------------------~~~~~~~~l~--------~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~i~~~YG~T  347 (631)
T PRK07769        297 ---------------------KDGEPPLDLS--------NVKGLLNGSEPVSPASMRKFNEAFAPYGLPPTAIKPSYGMA  347 (631)
T ss_pred             ---------------------hhcccCcchh--------heeeEEeccCCCCHHHHHHHHHHHhhcCCChhhcccccchh
Confidence                                 0000112333        899999999999999999998887   33   599999999


Q ss_pred             ccccceecccCCCC--------------------------ccCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEec
Q 010455          419 ESCSGCFTSLADVF--------------------------NMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRG  472 (510)
Q Consensus       419 E~~~~~~~~~~~~~--------------------------~~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g  472 (510)
                      |++.+++.......                          ....++|+|+++.+++|+|.+++.+++.|  +.|||+|+|
T Consensus       348 E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~G~~~~~~~~~ivd~~~g~~~~~g--e~GEl~v~g  425 (631)
T PRK07769        348 EATLFVSTTPMDEEPTVIYVDRDELNAGRFVEVPADAPNAVAQVSAGKVGVSEWAVIVDPETASELPDG--QIGEIWLHG  425 (631)
T ss_pred             hheeEEeccCCCCCceEEEEcHHHHhCCCeEecCCCCCCceeEEeCCCcCCCcEEEEEcCCCCcCCCCC--CEEEEEecC
Confidence            99876554332110                          01247999999999999994466666665  899999999


Q ss_pred             CCccccccCCchhhhhhhc------------------cCccccCCe-eeccCCccC
Q 010455          473 NTLFSGYYKRPDLTEEVIV------------------DGWFHTGKN-PWQYTFKKL  509 (510)
Q Consensus       473 ~~v~~gY~~~~~~~~~~~~------------------~gw~~TGDl-~~d~dG~~~  509 (510)
                      |+++.||||+++.+.+.|.                  +|||+|||+ +++ ||++.
T Consensus       426 p~v~~GY~~~~~~t~~~f~~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~~-dG~l~  480 (631)
T PRK07769        426 NNIGTGYWGKPEETAATFQNILKSRLSESHAEGAPDDALWVRTGDYGVYF-DGELY  480 (631)
T ss_pred             CCccccccCChhHHHHHHhhhcccccccccccCcccCCCeeeccccccEE-CCEEE
Confidence            9999999999999999883                  389999999 995 88764

>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional

Probab=100.00  E-value=1.6e-50  Score=423.84  Aligned_cols=397  Identities=20%  Similarity=0.217  Sum_probs=321.0

Q ss_pred             CCCCCCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHH
Q 010455           38 SPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWII  117 (510)
Q Consensus        38 ~~~~~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~  117 (510)
                      .|...+++.++|+++++++|+++|+++.   +      +.+||+||.+++.++|..|.+.|+++|++|+++++|++++++
T Consensus        16 ~~~~~~~l~~~l~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~v~~la~~L~~~gi~~g~~V~v~~~n~~~~~~   86 (542)
T PRK06155         16 LPPSERTLPAMLARQAERYPDRPLLVFG---G------TRWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLD   86 (542)
T ss_pred             CCccccCHHHHHHHHHHHCCCCeEEEeC---C------ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHH
Confidence            4456788999999999999999999865   3      479999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCce
Q 010455          118 AMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS  197 (510)
Q Consensus       118 ~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  197 (510)
                      ++|||+++|++++|+++.++.+++..+++.+++++++++.+....+.+..... ..++.++.++.....      .....
T Consensus        87 ~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------~~~~~  159 (542)
T PRK06155         87 VFLGCAWLGAIAVPINTALRGPQLEHILRNSGARLLVVEAALLAALEAADPGD-LPLPAVWLLDAPASV------SVPAG  159 (542)
T ss_pred             HHHHHHHhCCEEEEeccccCHHHHHHHHHhcCceEEEEChhhHHHHHHhcccc-cCcceEEEecCcccc------ccccc
Confidence            99999999999999999999999999999999999999988776654433221 234455555432210      00000


Q ss_pred             eeeHHHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHH
Q 010455          198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAH  277 (510)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h  277 (510)
                      + ...++.. ...........++++++++|||||||.||+|.++|+++..........+     .+.+++++++.+|++|
T Consensus       160 ~-~~~~~~~-~~~~~~~~~~~~~~~a~il~TSGTTG~PK~V~~t~~~~~~~~~~~~~~~-----~~~~~~~~l~~~pl~~  232 (542)
T PRK06155        160 W-STAPLPP-LDAPAPAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDL-----EIGADDVLYTTLPLFH  232 (542)
T ss_pred             c-chhhhcc-cCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEEHHHHHHHHHHHHHhc-----CCCCCCEEEEecCHHH
Confidence            0 0011111 1111122334678999999999999999999999999988877766666     7889999999999999


Q ss_pred             HHHHHHHHHHHhcCcEEEEeCC-CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhc
Q 010455          278 IYDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNM  356 (510)
Q Consensus       278 ~~g~~~~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (510)
                      ..++...+.+++.|+++++.+. ++..+++.++++++|+++++|+++..+++...                         
T Consensus       233 ~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~-------------------------  287 (542)
T PRK06155        233 TNALNAFFQALLAGATYVLEPRFSASGFWPAVRRHGATVTYLLGAMVSILLSQPA-------------------------  287 (542)
T ss_pred             HHHHHHHHHHHHcCceEEeeCCCCHHHHHHHHHHhCCcEEEchHHHHHHHHcCcC-------------------------
Confidence            9998878889999999998775 89999999999999999999999988764210                         


Q ss_pred             ccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeeccccccccceecccCCCCccCC
Q 010455          357 KKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIG  436 (510)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~~~~~~~~~~~~~~  436 (510)
                                  .+....        +++|.++.||  +++.+.+.+++.+|+++++.||+||++.++.....  ...++
T Consensus       288 ------------~~~~~~--------~~l~~~~~g~--~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~--~~~~~  343 (542)
T PRK06155        288 ------------RESDRA--------HRVRVALGPG--VPAALHAAFRERFGVDLLDGYGSTETNFVIAVTHG--SQRPG  343 (542)
T ss_pred             ------------cccccc--------CceEEEEEcC--CCHHHHHHHHHHcCCCEEeeecccccCccccCCCC--CCCCC
Confidence                        000111        3788777665  56888888988899999999999999887655332  23347


Q ss_pred             ccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecC---CccccccCCchhhhhhhccCccccCCe-eeccCCccC
Q 010455          437 TVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGN---TLFSGYYKRPDLTEEVIVDGWFHTGKN-PWQYTFKKL  509 (510)
Q Consensus       437 svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~---~v~~gY~~~~~~~~~~~~~gw~~TGDl-~~d~dG~~~  509 (510)
                      ++|.|.++++++|+| +++++++.+  +.|||+++|+   +++.||+++++.+.+.|.+|||+|||+ ++|+||++.
T Consensus       344 ~vG~~~~~~~~~i~d-~~~~~~~~g--~~Gei~v~~~~~~~~~~GY~~~~~~~~~~~~~~~~~TGD~~~~~~dG~l~  417 (542)
T PRK06155        344 SMGRLAPGFEARVVD-EHDQELPDG--EPGELLLRADEPFAFATGYFGMPEKTVEAWRNLWFHTGDRVVRDADGWFR  417 (542)
T ss_pred             CcCccCCCceEEEEC-CCCCCCCCC--CceEEEEecCCccccchhhcCCHHHHHHhhcCCcEeccceEEEcCCceEE
Confidence            899999999999999 888877766  8999999998   699999999999998899999999999 999999754

>PRK05620 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.8e-50  Score=425.54  Aligned_cols=411  Identities=19%  Similarity=0.261  Sum_probs=324.0

Q ss_pred             CCCCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHh-CCCCCCCEEEEEcCCchhHHHH
Q 010455           40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRS-RGVNPGDRCGIYGSNCPEWIIA  118 (510)
Q Consensus        40 ~~~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~-~gv~~gd~Vai~~~ns~~~~~~  118 (510)
                      ..+.|+.++|++++..+|+++|+.+.   +.   ..+.+||+||.+++.++|++|++ .|+++||+|+++++|+++++++
T Consensus         7 ~~~~~~~~~l~~~a~~~~~~~a~~~~---~~---~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~~~~~n~~e~~~~   80 (576)
T PRK05620          7 DVPLSLTRILEYGSTVHGDTTVTTWG---GA---EQEQTTFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEV   80 (576)
T ss_pred             cCCCcHHHHHHHHHHhCCCceEEEEc---CC---ceEEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHH
Confidence            33568999999999999999998864   32   23789999999999999999996 7999999999999999999999


Q ss_pred             HHHHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCcee
Q 010455          119 MEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSC  198 (510)
Q Consensus       119 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  198 (510)
                      ++||+++|++++++++..+.+++.++++.++++++|++....+.+.+.... ....+.++..+.................
T Consensus        81 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~  159 (576)
T PRK05620         81 LFAVACMGAVFNPLNKQLMNDQIVHIINHAEDEVIVADPRLAEQLGEILKE-CPCVRAVVFIGPSDADSAAAHMPEGIKV  159 (576)
T ss_pred             HHHHHhcCCEEeecccccCHHHHHHHHhccCCcEEEEChhhHHHHHHHHhh-CccccEEEEecCcccccchhcccccccc
Confidence            999999999999999999999999999999999999998877666544433 2445555555432111000001111234


Q ss_pred             eeHHHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhh--hhhhhccccCCCCcEEEEecChH
Q 010455          199 FSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVD--QMFVVTGKVCSEEDTYFSFLPLA  276 (510)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~--~~~~~~~~~~~~~d~~~~~~pl~  276 (510)
                      .+++++.+............++++++++|||||||.||+|.++|+++........  ..+     .+..+|++++.+|++
T Consensus       160 ~~~~~l~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~-----~~~~~~~~l~~~pl~  234 (576)
T PRK05620        160 YSYEALLDGRSTVYDWPELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSL-----AVTHGESFLCCVPIY  234 (576)
T ss_pred             ccHHHHhhcCCCcCCCCCCCccceeEEEECCCCCCCCceEEEEcHHHHHHHHHhhhhhhc-----CCCCCCeEEEeCChH
Confidence            4577776544322233345678999999999999999999999999876544322  223     678899999999999


Q ss_pred             HHHHHHHHHHHHhcCcEEEEeCC--CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhh
Q 010455          277 HIYDQIIETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLG  354 (510)
Q Consensus       277 h~~g~~~~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (510)
                      |.+++...+.++..|+++++...  ++..+++.++++++|+++++|.++..++......                     
T Consensus       235 h~~g~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~---------------------  293 (576)
T PRK05620        235 HVLSWGVPLAAFMSGTPLVFPGPDLSAPTLAKIIATAMPRVAHGVPTLWIQLMVHYLKN---------------------  293 (576)
T ss_pred             HhhhhHHHHHHHhcCceEEecCCCCCHHHHHHHHHHhcCceeeecCHHHHHHHHHhhcc---------------------
Confidence            99998878889999999988753  8999999999999999999999998876522100                     


Q ss_pred             hcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeeccccccccceecccCCC---
Q 010455          355 NMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADV---  431 (510)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~~~~~~~~~---  431 (510)
                                      ..+.        .+||.+++||+++++++.+.+++.+|+++++.||+||++..++......   
T Consensus       294 ----------------~~~~--------~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~  349 (576)
T PRK05620        294 ----------------PPER--------MSLQEIYVGGSAVPPILIKAWEERYGVDVVHVWGMTETSPVGTVARPPSGVS  349 (576)
T ss_pred             ----------------Cccc--------CceeEEEEcCCCCCHHHHHHHHHHhCCceeeeccccccccceeeeccCCccc
Confidence                            0000        2799999999999999999999888999999999999987665433221   


Q ss_pred             ----CccCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhh----------------hhhh-
Q 010455          432 ----FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLT----------------EEVI-  490 (510)
Q Consensus       432 ----~~~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~----------------~~~~-  490 (510)
                          .....++|++.++++++|+| + ++.++...++.|||+++|++++.||+++++.+                .+.| 
T Consensus       350 ~~~~~~~~~~~G~~~~~~~~~i~~-~-g~~~~~~~~~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~f~~~~~~~~~~~~~  427 (576)
T PRK05620        350 GEARWAYRVSQGRFPASLEYRIVN-D-GQVMESTDRNEGEIQVRGNWVTASYYHSPTEEGGGAASTFRGEDVEDANDRFT  427 (576)
T ss_pred             cccccccccccCCcCCceeEEEec-C-CccccCCCCCceEEEEEcCcccccccCCccccccccccccccccchhhhcccc
Confidence                11225789999999999999 6 66555444578999999999999999999887                2334 


Q ss_pred             ccCccccCCe-eeccCCccC
Q 010455          491 VDGWFHTGKN-PWQYTFKKL  509 (510)
Q Consensus       491 ~~gw~~TGDl-~~d~dG~~~  509 (510)
                      .+|||+|||+ ++|+||++.
T Consensus       428 ~~g~~~TGD~~~~~~dg~l~  447 (576)
T PRK05620        428 ADGWLRTGDVGSVTRDGFLT  447 (576)
T ss_pred             cCCcEecCceEEEcCCceEE
Confidence            5789999999 999999764

>PRK05852 acyl-CoA synthetase; Validated

Probab=100.00  E-value=9e-51  Score=425.75  Aligned_cols=402  Identities=20%  Similarity=0.247  Sum_probs=311.5

Q ss_pred             CCCCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHH
Q 010455           40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM  119 (510)
Q Consensus        40 ~~~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~  119 (510)
                      ....++.++|+++++++|+++|+++.   ++.    +.+||+||.++++++|++|.+.|+++||+|+++++|++++++++
T Consensus        13 ~~~~~l~~~l~~~a~~~p~~~ai~~~---~~~----~~~Ty~~l~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~   85 (534)
T PRK05852         13 DFGPRIADLVEVAATRLPEAPALVVT---ADR----IAISYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNAEFVVAL   85 (534)
T ss_pred             hhcccHHHHHHHHHHhCCCCcEEEec---CCC----CcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHHHH
Confidence            44678999999999999999999865   432    57999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCceee
Q 010455          120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCF  199 (510)
Q Consensus       120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  199 (510)
                      |||+++|++++++++.++.+++.++++.++++.+|++............   ......+.+.......     . .....
T Consensus        86 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-----~-~~~~~  156 (534)
T PRK05852         86 LAASRADLVVVPLDPALPIAEQRVRSQAAGARVVLIDADGPHDRAEPTT---RWWPLTVNVGGDSGPS-----G-GTLSV  156 (534)
T ss_pred             HHHHHcCcEEeecCCCCCcHHHHHHHHhCCCCEEEEcCCCcchhccccc---cccceeeeeccccccc-----c-ccccc
Confidence            9999999999999999999999999999999999998753321111110   0011111111110000     0 00000


Q ss_pred             eHHHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHH
Q 010455          200 SWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIY  279 (510)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~  279 (510)
                      .+...... ...........++.++++|||||||.||+|.++|+++...+......+     .+..+|++++.+|++|.+
T Consensus       157 ~~~~~~~~-~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~~~~~~~~~~~~~~~~~-----~~~~~d~~~~~~p~~~~~  230 (534)
T PRK05852        157 HLDAATEP-TPATSTPEGLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGY-----RLSPRDATVAVMPLYHGH  230 (534)
T ss_pred             ccccccCC-CccccccCCCCCCceEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHh-----CCCCcceEEEecCcchhH
Confidence            00000000 000011122346789999999999999999999999999998887777     788999999999999999


Q ss_pred             HHHH-HHHHHhcCcEEEEeC---CCHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhh
Q 010455          280 DQII-ETHCIHKGCSIGFWR---GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGN  355 (510)
Q Consensus       280 g~~~-~l~~l~~G~~~v~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (510)
                      ++.. ++.+++.|+++++..   .++..+++.++++++|+++++|.++..+.+.....                      
T Consensus       231 g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~----------------------  288 (534)
T PRK05852        231 GLIAALLATLASGGAVLLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQILLERAATE----------------------  288 (534)
T ss_pred             HHHHHHHHHHhcCCeEEeCCCcCcCHHHHHHHHHHcCCcEEEcChHHHHHHHhhcccc----------------------
Confidence            9875 777899999988854   27889999999999999999999999987532110                      


Q ss_pred             cccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeeccccccccceecccCCC----
Q 010455          356 MKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADV----  431 (510)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~~~~~~~~~----  431 (510)
                                   ....+.        +++|.++++|+++++++.+++.+.+++.+++.||+||++..++....+.    
T Consensus       289 -------------~~~~~~--------~~lr~i~~~G~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~  347 (534)
T PRK05852        289 -------------PSGRKP--------AALRFIRSCSAPLTAETAQALQTEFAAPVVCAFGMTEATHQVTTTQIEGIGQT  347 (534)
T ss_pred             -------------cccccC--------CCeeEEEECCCCCCHHHHHHHHHHhCCChhhccCccccchhhhcCCccccccc
Confidence                         000001        3899999999999999999999999999999999999987655432211    


Q ss_pred             CccCCccccc--cCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhhccCccccCCe-eeccCCcc
Q 010455          432 FNMIGTVGVP--MTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGKN-PWQYTFKK  508 (510)
Q Consensus       432 ~~~~~svG~p--~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDl-~~d~dG~~  508 (510)
                      .....++|.+  .+|++++|+| +++++++.+  +.|||+|+|+.++.||+++++.+.+.|.+|||+|||+ ++|+||++
T Consensus       348 ~~~~~~~g~~g~~~g~~~~i~d-~~g~~~~~g--~~Gel~v~g~~v~~gY~~~~~~t~~~~~~g~~~TGD~~~~d~dG~l  424 (534)
T PRK05852        348 ENPVVSTGLVGRSTGAQIRIVG-SDGLPLPAG--AVGEVWLRGTTVVRGYLGDPTITAANFTDGWLRTGDLGSLSAAGDL  424 (534)
T ss_pred             cCcccccccCCCCCCCeEEEEC-CCCCCCCCC--CceEEEEecCcccchhcCCcccchhhhcCCCcccCceEEEeCCCcE
Confidence            1111234444  7999999999 888877766  8999999999999999999999999999999999999 99999986


Q ss_pred             C
Q 010455          509 L  509 (510)
Q Consensus       509 ~  509 (510)
                      .
T Consensus       425 ~  425 (534)
T PRK05852        425 S  425 (534)
T ss_pred             E
Confidence            5

>PRK07786 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.3e-50  Score=425.08  Aligned_cols=396  Identities=24%  Similarity=0.274  Sum_probs=326.2

Q ss_pred             CCCCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHH
Q 010455           40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM  119 (510)
Q Consensus        40 ~~~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~  119 (510)
                      ...+|+.+.++.+++.+|+++|+.+.   +      +.+||.||.++++++|.+|.+.|+++|++|+++++|++++++++
T Consensus        14 ~~~~n~~~~~~~~a~~~~~~~a~~~~---~------~~~ty~~l~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~   84 (542)
T PRK07786         14 ARRQNWVNQLARHALMQPDAPALRFL---G------NTTTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESV   84 (542)
T ss_pred             ccccCHHHHHHHHHHHCCCCeEEEeC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHH
Confidence            44689999999999999999999865   4      47999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCceee
Q 010455          120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCF  199 (510)
Q Consensus       120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  199 (510)
                      +||+++|++++|+++..+.+++..+++.++++.++++......+... .......+.++..++...          ....
T Consensus        85 ~a~~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----------~~~~  153 (542)
T PRK07786         85 LAANMLGAIAVPVNFRLTPPEIAFLVSDCGAHVVVTEAALAPVATAV-RDIVPLLSTVVVAGGSSD----------DSVL  153 (542)
T ss_pred             HHHHHcCeEEEEcCccCCHHHHHHHHHhCCCcEEEEccchHHHHHHh-hhccCccceEEEecCCCc----------cccc
Confidence            99999999999999999999999999999999999998766554322 222244555555543211          0123


Q ss_pred             eHHHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccC-CCCcEEEEecChHHH
Q 010455          200 SWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVC-SEEDTYFSFLPLAHI  278 (510)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~-~~~d~~~~~~pl~h~  278 (510)
                      .++++...............+++++++|||||||.||+|.++|+++...+......+     ++ ..+|++++.+|++|.
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~p~~~~  228 (542)
T PRK07786        154 GYEDLLAEAGPAHAPVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTN-----GADINSDVGFVGVPLFHI  228 (542)
T ss_pred             CHHHHhhccCCCCCCCCCCCCCeEEEEeCCCCCccchhhhhhHHHHHHHHHHHHHhc-----CCCCCCceEEEecchHHH
Confidence            455554433222222334567899999999999999999999999998887766555     44 577999999999999


Q ss_pred             HHHHHHHHHHhcCcEEEEeC---CCHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhh
Q 010455          279 YDQIIETHCIHKGCSIGFWR---GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGN  355 (510)
Q Consensus       279 ~g~~~~l~~l~~G~~~v~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (510)
                      +|+..++.++..|+++++.+   .++..+++.++++++|.++++|.++..++......                      
T Consensus       229 ~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~----------------------  286 (542)
T PRK07786        229 AGIGSMLPGLLLGAPTVIYPLGAFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQAR----------------------  286 (542)
T ss_pred             HHHHHHHHHHHccCEEEEccCCCcCHHHHHHHHHHcCCeEEEehHHHHHHHHhCcccC----------------------
Confidence            99987888999999999865   28999999999999999999999999987521100                      


Q ss_pred             cccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhc-CCCeeeeccccccccceecccCC-CCc
Q 010455          356 MKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESCSGCFTSLAD-VFN  433 (510)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~-g~~l~~~yG~tE~~~~~~~~~~~-~~~  433 (510)
                                   ..  +         .++|.+++||+++++++.+++.+.+ +..+++.||+||++.+.+....+ ...
T Consensus       287 -------------~~--~---------~~lr~i~~gg~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~  342 (542)
T PRK07786        287 -------------PR--D---------LALRVLSWGAAPASDTLLRQMAATFPEAQILAAFGQTEMSPVTCMLLGEDAIR  342 (542)
T ss_pred             -------------cc--C---------cceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeecccccccceEecCcccccc
Confidence                         00  0         1689999999999999999999988 78899999999998765543222 223


Q ss_pred             cCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhhccCccccCCe-eeccCCccC
Q 010455          434 MIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGKN-PWQYTFKKL  509 (510)
Q Consensus       434 ~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDl-~~d~dG~~~  509 (510)
                      ..+++|+|++++.++|+| +++++++.+  +.|||+++|+.++.||+++++.+.+.|.+|||+|||+ ++++||++.
T Consensus       343 ~~~~~G~~~~~~~~~i~d-~~~~~~~~g--~~Gel~v~g~~~~~gy~~~~~~~~~~f~~~~~~TGDl~~~~~~g~~~  416 (542)
T PRK07786        343 KLGSVGKVIPTVAARVVD-ENMNDVPVG--EVGEIVYRAPTLMSGYWNNPEATAEAFAGGWFHSGDLVRQDEEGYVW  416 (542)
T ss_pred             cCCCccccCCCceEEEEC-CCCCCCcCC--CceEEEEEChhhhhhhcCCHHHHHHHhhCCcccccceEEEcCCceEE
Confidence            447899999999999999 888777665  8999999999999999999999999999999999999 999999764

>PRK06087 short chain acyl-CoA synthetase; Reviewed

Probab=100.00  E-value=2.9e-50  Score=423.23  Aligned_cols=396  Identities=21%  Similarity=0.271  Sum_probs=318.6

Q ss_pred             CCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHH
Q 010455           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (510)
Q Consensus        42 ~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA  121 (510)
                      ..++.++|++.++++|+++|+++.   ++     +.+||+||.++++++|++|++.|+++||+|+++++|+++++++++|
T Consensus        22 ~~~l~~~~~~~~~~~pd~~a~~~~---~~-----~~~Ty~~l~~~v~~la~~l~~~G~~~gd~V~i~~~n~~~~~~~~lA   93 (547)
T PRK06087         22 DASLADYWQQTARAMPDKIAVVDN---HG-----ASYTYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLA   93 (547)
T ss_pred             CCCHHHHHHHHHHHCCCceEEEcC---CC-----CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence            367999999999999999999854   33     4799999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCCh-----hhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCc
Q 010455          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI-----PSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGV  196 (510)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  196 (510)
                      |+++|++++|+++..+.+++.++++.++++++++++...     ..+..... .....+.++..+.....         .
T Consensus        94 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---------~  163 (547)
T PRK06087         94 CLKVGAVSVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQN-QLPQLQQIVGVDKLAPA---------T  163 (547)
T ss_pred             HHHcCcEEeccchhcCHHHHHHHHHhcCCeEEEEecccccccHHHHHHHHHh-hCCCCcEEEEeCCcCCC---------c
Confidence            999999999999999999999999999999999986432     22222211 22334455554432210         0


Q ss_pred             eeeeHHHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChH
Q 010455          197 SCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLA  276 (510)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~  276 (510)
                      ....+.++...............+++++|+|||||||.||+|.++|.++......+...+     .+..+|++++.+|++
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~  238 (547)
T PRK06087        164 SSLSLSQIIADYEPLTTAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARL-----NLTWQDVFMMPAPLG  238 (547)
T ss_pred             CccCHHHHhccCCcccCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhc-----CCCCCCeEEEecchH
Confidence            122344444332111122234678999999999999999999999999998888776666     788999999999999


Q ss_pred             HHHHHHH-HHHHHhcCcEEEEeCC-CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhh
Q 010455          277 HIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLG  354 (510)
Q Consensus       277 h~~g~~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (510)
                      |.+|+.. .+.+++.|+++++.+. ++..+++.++++++|+++++|.++..++.....                      
T Consensus       239 h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~----------------------  296 (547)
T PRK06087        239 HATGFLHGVTAPFLIGARSVLLDIFTPDACLALLEQQRCTCMLGATPFIYDLLNLLEK----------------------  296 (547)
T ss_pred             HHHHHHHHHHHHHhcCCEEEecCCCCHHHHHHHHHHcCCCEEeccHHHHHHHHhcccc----------------------
Confidence            9999874 6778999999998775 999999999999999999888877776542110                      


Q ss_pred             hcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeeccccccccceecccCCC-Cc
Q 010455          355 NMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADV-FN  433 (510)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~~~~~~~~~-~~  433 (510)
                                     ...++        +++|.+++||+++++++.+.+... |+++++.||+||++.+........ ..
T Consensus       297 ---------------~~~~~--------~~lr~i~~gG~~~~~~~~~~~~~~-~~~l~~~YG~TE~~~~~~~~~~~~~~~  352 (547)
T PRK06087        297 ---------------QPADL--------SALRFFLCGGTTIPKKVARECQQR-GIKLLSVYGSTESSPHAVVNLDDPLSR  352 (547)
T ss_pred             ---------------CCCCC--------CCeEEEEEcCCCCCHHHHHHHHHc-CCcEEEEecccccCCccccCCCcchhh
Confidence                           00111        389999999999999999988775 999999999999987765543322 22


Q ss_pred             cCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhh-ccCccccCCe-eeccCCccC
Q 010455          434 MIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGKN-PWQYTFKKL  509 (510)
Q Consensus       434 ~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~gw~~TGDl-~~d~dG~~~  509 (510)
                      ..+++|+|++++.++++| +++.+++.|  +.|||+++|++++.||+++++.+.+.| .+|||+|||+ ++|++|+..
T Consensus       353 ~~~~~G~~~~~~~~~i~d-~~~~~~~~g--~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~  427 (547)
T PRK06087        353 FMHTDGYAAAGVEIKVVD-EARKTLPPG--CEGEEASRGPNVFMGYLDEPELTARALDEEGWYYSGDLCRMDEAGYIK  427 (547)
T ss_pred             cCCcCCccCCCceEEEEc-CCCCCCcCC--CcceEEEecccccccccCCHHHHHHHhCCCCCcCcCceEEECCCCCEE
Confidence            236789999999999999 888877665  899999999999999999999998888 7899999999 999999754

>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=1.6e-50  Score=426.13  Aligned_cols=409  Identities=22%  Similarity=0.328  Sum_probs=313.9

Q ss_pred             CCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhC-CCCCCCEEEEEcCCchhHHHHHH
Q 010455           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSR-GVNPGDRCGIYGSNCPEWIIAME  120 (510)
Q Consensus        42 ~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~-gv~~gd~Vai~~~ns~~~~~~~l  120 (510)
                      ..++.++|+++++++|+++|+.+.   +      +.+||.||.++++++|++|.+. |+++||+|+++++|++++++++|
T Consensus        23 ~~~~~~~l~~~~~~~p~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~~gi~~gd~V~i~~~n~~e~~~~~l   93 (562)
T PRK12492         23 YKSVVEVFERSCKKFADRPAFSNL---G------VTLSYAELERHSAAFAAYLQQHTDLVPGDRIAVQMPNVLQYPIAVF   93 (562)
T ss_pred             cCcHHHHHHHHHHhCCCCeeEecC---C------ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHH
Confidence            358999999999999999998754   2      5799999999999999999985 99999999999999999999999


Q ss_pred             HHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEec--CCChhhhhH--------
Q 010455          121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFA--NVSSSQKKE--------  190 (510)
Q Consensus       121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~--------  190 (510)
                      ||+++|++++++++..+.+++.++++.++++++++++.....+.......  ....++...  +........        
T Consensus        94 a~~~~G~v~v~~~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (562)
T PRK12492         94 GALRAGLIVVNTNPLYTAREMRHQFKDSGARALVYLNMFGKLVQEVLPDT--GIEYLIEAKMGDLLPAAKGWLVNTVVDK  171 (562)
T ss_pred             HHHHcCeEEeccCccCCHHHHHHHHhccCceEEEeccccchHHHHhhhcc--CceEEEeechhhccccccchhccccccc
Confidence            99999999999999999999999999999999999876544443322111  111111110  000000000        


Q ss_pred             -----hhhcCceeeeHHHHHHcC-CCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccc---
Q 010455          191 -----AEELGVSCFSWEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGK---  261 (510)
Q Consensus       191 -----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~---  261 (510)
                           ..........++++.... ...........+++++|+|||||||.||+|+++|+++...+......+.....   
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~  251 (562)
T PRK12492        172 VKKMVPAYHLPQAVPFKQALRQGRGLSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDGQ  251 (562)
T ss_pred             ccccccccCCcccccHHHHHhccCCCCCCCCCCCcCCeEEEEeCCCCCCCCceEEEechhHHHHHHHHHHHHhccccccc
Confidence                 000001123455554332 11112234567899999999999999999999999998877765554411100   


Q ss_pred             -cCCC-CcEEEEecChHHHHHHHH-HHHHHhcCcEEEEeC--CCHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhc
Q 010455          262 -VCSE-EDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWR--GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISS  336 (510)
Q Consensus       262 -~~~~-~d~~~~~~pl~h~~g~~~-~l~~l~~G~~~v~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~  336 (510)
                       .... .+++++.+|++|.+++.. ++..+..|..+++..  .++..+++.++++++|++.++|.++..++..       
T Consensus       252 ~~~~~~~~~~~~~~pl~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~-------  324 (562)
T PRK12492        252 PLMKEGQEVMIAPLPLYHIYAFTANCMCMMVSGNHNVLITNPRDIPGFIKELGKWRFSALLGLNTLFVALMDH-------  324 (562)
T ss_pred             ccccCCCeEEEEecchHHHHHHHHHHHHHhhcCceEEEecCCcCHHHHHHHHHHhCCceeeCcHHHHHHHHhC-------
Confidence             0122 467889999999999875 555778888777654  3889999999999999999999999987641       


Q ss_pred             cChhHHHHHHHHHHhhhhhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeecc
Q 010455          337 GGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYG  416 (510)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG  416 (510)
                                                    +.....+++        ++|.+++||+++++++.+.+++.+|+++++.||
T Consensus       325 ------------------------------~~~~~~~~~--------~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG  366 (562)
T PRK12492        325 ------------------------------PGFKDLDFS--------ALKLTNSGGTALVKATAERWEQLTGCTIVEGYG  366 (562)
T ss_pred             ------------------------------cCccccccc--------ceeEEEeccccCCHHHHHHHHHHhCCceeeccC
Confidence                                          111122232        899999999999999999999888999999999


Q ss_pred             ccccccceecccCCCCccCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhh-ccCcc
Q 010455          417 LTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWF  495 (510)
Q Consensus       417 ~tE~~~~~~~~~~~~~~~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~gw~  495 (510)
                      +||++.+++..........+++|+|+++++++|+| +++.+++.|  +.|||+|+|+.++.||+++++.+.+.| .+|||
T Consensus       367 ~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~v~ivd-~~~~~~~~g--~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~~  443 (562)
T PRK12492        367 LTETSPVASTNPYGELARLGTVGIPVPGTALKVID-DDGNELPLG--ERGELCIKGPQVMKGYWQQPEATAEALDAEGWF  443 (562)
T ss_pred             ccccCceeeecCCcccccCCccceecCCCEEEEEC-CCCCCCCCC--CceEEEEeCCccccccccCchhhhhcccCCCce
Confidence            99998776654433333447899999999999999 888777665  899999999999999999999999888 68999


Q ss_pred             ccCCe-eeccCCccC
Q 010455          496 HTGKN-PWQYTFKKL  509 (510)
Q Consensus       496 ~TGDl-~~d~dG~~~  509 (510)
                      +|||+ ++|+||.+.
T Consensus       444 ~TGD~g~~~~~G~l~  458 (562)
T PRK12492        444 KTGDIAVIDPDGFVR  458 (562)
T ss_pred             ecCcEEEECCCCeEE
Confidence            99999 999999754

>PRK07008 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.9e-50  Score=423.44  Aligned_cols=402  Identities=19%  Similarity=0.285  Sum_probs=318.0

Q ss_pred             CCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHH
Q 010455           43 ESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC  122 (510)
Q Consensus        43 ~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA~  122 (510)
                      .++.++|+++++++|+..++.+.   .  .+..+.+||.||.++++++|++|.+.|+++||+|+++++|+++++++++||
T Consensus        10 ~~~~~~l~~~~~~~~~~~~~~~~---~--~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~~d~v~i~~~~~~~~~~~~la~   84 (539)
T PRK07008         10 LLISSLIAHAARHAGDTEIVSRR---V--EGDIHRYTYRDCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYYGV   84 (539)
T ss_pred             CCHHHHHHHHHhhCCCceEEEee---c--cCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHH
Confidence            57899999999999998887653   1  122367999999999999999999999999999999999999999999999


Q ss_pred             HhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCceeeeHH
Q 010455          123 NSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWE  202 (510)
Q Consensus       123 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  202 (510)
                      +++|++++|++|..+.+++..+++.+++++++++.+..+.+.+.... ....+.++...+.....     ........++
T Consensus        85 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~~~~~~  158 (539)
T PRK07008         85 SGSGAVCHTINPRLFPEQIAYIVNHAEDRYVLFDLTFLPLVDALAPQ-CPNVKGWVAMTDAAHLP-----AGSTPLLCYE  158 (539)
T ss_pred             HhcCcEEeecccccCHHHHHHHHhccCCcEEEEcchhHHHHHHHHhh-CCCceEEEEEccCCccc-----cCCcccccHH
Confidence            99999999999999999999999999999999998776655443322 23444555544332100     0112245566


Q ss_pred             HHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHh--hhhhhhhhccccCCCCcEEEEecChHHHHH
Q 010455          203 EFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVL--SVDQMFVVTGKVCSEEDTYFSFLPLAHIYD  280 (510)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~--~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g  280 (510)
                      ++..............++++++++|||||||.||+|++||++++....  .+...+     ++..+|++++.+|++|..+
T Consensus       159 ~l~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~h~~~  233 (539)
T PRK07008        159 TLVGAQDGDYDWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAM-----GLSARDAVLPVVPMFHVNA  233 (539)
T ss_pred             HHhcccCCCcCcccCCcccceEEEECCCCCCCCcEEEEecHHHHHHHHHhhccccc-----CCCCCceEEecCchHHhhh
Confidence            665433222223345678899999999999999999999999875432  222233     6788999999999999888


Q ss_pred             HHHHHHHHhcCcEEEEeCC--CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhccc
Q 010455          281 QIIETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKK  358 (510)
Q Consensus       281 ~~~~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (510)
                      +...+.++..|+++++.+.  ++..+++.++++++|++.++|.++..+++....                          
T Consensus       234 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~--------------------------  287 (539)
T PRK07008        234 WGLPYSAPLTGAKLVLPGPDLDGKSLYELIEAERVTFSAGVPTVWLGLLNHMRE--------------------------  287 (539)
T ss_pred             HHHHHHHHhcCceEEEecCCcCHHHHHHHHHHcCCEEEEechHHHHHHHhcccc--------------------------
Confidence            7777788999999998753  899999999999999999999999988752211                          


Q ss_pred             CCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeeccccccccceecccCCC-------
Q 010455          359 GMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADV-------  431 (510)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~~~~~~~~~-------  431 (510)
                                 +..++        ++||.++++|+++++++.+.+.+.+|+.+++.||+||++..++......       
T Consensus       288 -----------~~~~~--------~~l~~~~~~G~~l~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~  348 (539)
T PRK07008        288 -----------AGLRF--------STLRRTVIGGSACPPAMIRTFEDEYGVEVIHAWGMTEMSPLGTLCKLKWKHSQLPL  348 (539)
T ss_pred             -----------cCCCc--------ccceEEEEcCCCCCHHHHHHHHHHhCCceecccccccccccceecccccccccCCc
Confidence                       01112        2899999999999999999998888999999999999987554332110       


Q ss_pred             ---CccCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhhccCccccCCe-eeccCCc
Q 010455          432 ---FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGKN-PWQYTFK  507 (510)
Q Consensus       432 ---~~~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDl-~~d~dG~  507 (510)
                         .....++|+|+||++++|+| +++..++.+.++.|||+++|+.++.||+++++   +.+.+|||+|||+ ++|+||.
T Consensus       349 ~~~~~~~~~~G~p~pg~~~~i~d-~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~---~~~~~g~~~TGD~~~~~~dg~  424 (539)
T PRK07008        349 DEQRKLLEKQGRVIYGVDMKIVG-DDGRELPWDGKAFGDLQVRGPWVIDRYFRGDA---SPLVDGWFPTGDVATIDADGF  424 (539)
T ss_pred             hhhhhhcccCCccccceEEEEEC-CCCCccCCCCCcceEEEEeCCccchhhcCChh---hhhcCCCcccCceEEEcCCCc
Confidence               11236799999999999999 88887776555689999999999999999983   3456899999999 9999997


Q ss_pred             cC
Q 010455          508 KL  509 (510)
Q Consensus       508 ~~  509 (510)
                      +.
T Consensus       425 l~  426 (539)
T PRK07008        425 MQ  426 (539)
T ss_pred             EE
Confidence            64

>PRK07470 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.1e-50  Score=424.76  Aligned_cols=394  Identities=20%  Similarity=0.262  Sum_probs=315.9

Q ss_pred             CCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHH
Q 010455           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (510)
Q Consensus        42 ~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA  121 (510)
                      ..|+.++|...++++|+++|+++.   +      +.+||+||.++++++|+.|++.|+++|++|+++++|+++++++++|
T Consensus         6 ~~~~~~~~~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA   76 (528)
T PRK07470          6 VMNLAHFLRQAARRFPDRIALVWG---D------RSWTWREIDARVDALAAALAARGVRKGDRILVHSRNCNQMFESMFA   76 (528)
T ss_pred             CCCHHHHHHHHHHHCCCceEEEEC---C------ccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHH
Confidence            578999999999999999999864   3      5799999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCceeeeH
Q 010455          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW  201 (510)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  201 (510)
                      |+++|++++++++..+.+++.++++.++++.++++......+..... .......++.+.....            ...+
T Consensus        77 ~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~------------~~~~  143 (528)
T PRK07470         77 AFRLGAVWVPTNFRQTPDEVAYLAEASGARAMICHADFPEHAAAVRA-ASPDLTHVVAIGGARA------------GLDY  143 (528)
T ss_pred             HHhCCeEEEecCccCCHHHHHHHHHhcCceEEEEcchhHHHHHHHHh-hCCcCceEEEeCCCcc------------cccH
Confidence            99999999999999999999999999999999999876544433221 1123344444433211            2345


Q ss_pred             HHHHHcC-CCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHH
Q 010455          202 EEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD  280 (510)
Q Consensus       202 ~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g  280 (510)
                      +++.... ..........++++++++|||||||.||+|.++|+++...+......+   ..+....|+++..+|++|..+
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~  220 (528)
T PRK07470        144 EALVARHLGARVANAAVDHDDPCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLADL---MPGTTEQDASLVVAPLSHGAG  220 (528)
T ss_pred             HHHHhcCCCCCCCcccCCCCCeEEEEeCCCCCCCCcEEEEehhhHHHHHHHHHHHh---ccCCCcccEEEEeccchhHHH
Confidence            5554433 112223345678999999999999999999999999976554432222   114567899999999999999


Q ss_pred             HHHHHHHHhcCcEEEEeCC---CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhcc
Q 010455          281 QIIETHCIHKGCSIGFWRG---DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMK  357 (510)
Q Consensus       281 ~~~~l~~l~~G~~~v~~~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (510)
                      +...+ .++.|++.++.+.   ++..+++.++++++|++.++|.+++.+++.                            
T Consensus       221 ~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~----------------------------  271 (528)
T PRK07470        221 IHQLC-QVARGAATVLLPSERFDPAEVWALVERHRVTNLFTVPTILKMLVEH----------------------------  271 (528)
T ss_pred             HHHHH-HHhcCceEEEecccCcCHHHHHHHHHhcCCeEEechHHHHHHHHhC----------------------------
Confidence            86544 5677777776642   889999999999999999999999988641                            


Q ss_pred             cCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeeccccccccceecccCC-------
Q 010455          358 KGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLAD-------  430 (510)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~~~~~~~~-------  430 (510)
                               +..+..++        +++|.+++||+++++...+++.+.+|..+++.||+||++..++.....       
T Consensus       272 ---------~~~~~~~~--------~~lr~~~~gG~~l~~~~~~~~~~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~  334 (528)
T PRK07470        272 ---------PAVDRYDH--------SSLRYVIYAGAPMYRADQKRALAKLGKVLVQYFGLGEVTGNITVLPPALHDAEDG  334 (528)
T ss_pred             ---------cCcCCCCC--------cceEEEEEcCCCCCHHHHHHHHHHhCcHHHHhCCCcccCCceeecchhhcccccc
Confidence                     11111122        389999999999999999988888899999999999998766543221       


Q ss_pred             CCccCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhhccCccccCCe-eeccCCccC
Q 010455          431 VFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGKN-PWQYTFKKL  509 (510)
Q Consensus       431 ~~~~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDl-~~d~dG~~~  509 (510)
                      .....+++|+|+++++++|+| +++++++.|  +.|||+++|+.++.||+++++.+.+.|.+|||+|||+ ++|+||++.
T Consensus       335 ~~~~~~~~G~~~~g~~~~i~d-~~~~~~~~g--~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~TGDl~~~~~~g~l~  411 (528)
T PRK07470        335 PDARIGTCGFERTGMEVQIQD-DEGRELPPG--ETGEICVIGPAVFAGYYNNPEANAKAFRDGWFRTGDLGHLDARGFLY  411 (528)
T ss_pred             ccceeeccCcccCCcEEEEEC-CCCCCCCCC--CceEEEEeCCccchhhcCCHHHHHhhhcCCcEecceeEEEccCCeEE
Confidence            122347899999999999999 888877665  8999999999999999999999998889999999999 999999865

>PRK06060 acyl-CoA synthetase; Validated

Probab=100.00  E-value=6.6e-51  Score=439.52  Aligned_cols=369  Identities=19%  Similarity=0.264  Sum_probs=300.4

Q ss_pred             CCHHHHHHHHHhh--CCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHH
Q 010455           43 ESPWQFFCDSAKR--IPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME  120 (510)
Q Consensus        43 ~sl~~~l~~~a~~--~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~l  120 (510)
                      .|+.++|.++++.  +||++|++..          ..+||+||.++++++|++|.+.|+++|++|+++++|++++++++|
T Consensus         4 ~~~~~~~~~~a~~~~~pd~~a~~~~----------~~~Ty~eL~~~~~~lA~~L~~~g~~~g~~V~i~~~~~~~~~~~~l   73 (705)
T PRK06060          4 GNLAGLLAEQASEAGWYDRPAFYAA----------DVVTHGQIHDGAARLGEVLRNRGLSSGDRVLLCLPDSPDLVQLLL   73 (705)
T ss_pred             cCHHHHHHHHHhhccCCCceEEEec----------CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence            4788999998886  7999999743          259999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCceeee
Q 010455          121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFS  200 (510)
Q Consensus       121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  200 (510)
                      ||+++|++++|++|.++.+++..+++.++++++|++......+...         .++                     .
T Consensus        74 a~~~aG~~~vpi~p~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~---------~~~---------------------~  123 (705)
T PRK06060         74 ACLARGVMAFLANPELHRDDHALAARNTEPALVVTSDALRDRFQPS---------RVA---------------------E  123 (705)
T ss_pred             HHHHhCcEEEecCCCCCHHHHHHHHhcCCCcEEEEchHHhhhhccc---------ccc---------------------h
Confidence            9999999999999999999999999999999999986544332110         000                     0


Q ss_pred             HHHHHHcC--CCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhh-hhhhhccccCCCCcEEEEecChHH
Q 010455          201 WEEFLQLG--TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVD-QMFVVTGKVCSEEDTYFSFLPLAH  277 (510)
Q Consensus       201 ~~~~~~~~--~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~-~~~~~~~~~~~~~d~~~~~~pl~h  277 (510)
                      ...+....  ..+.......++++++++|||||||.||+|+++|+++.+.+..+. ..+     .+...|++++..|++|
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~~l~~~~~~~  198 (705)
T PRK06060        124 AAELMSEAARVAPGGYEPMGGDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRKAL-----RLTPEDTGLCSARMYF  198 (705)
T ss_pred             hhhhhhhccccCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEccccHHHHHHHHHHHhh-----CCCCcceeEEeccchh
Confidence            01111110  011112234568899999999999999999999999988876653 334     6788999999999999


Q ss_pred             HHHHH-HHHHHHhcCcEEEEeCC--CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhh
Q 010455          278 IYDQI-IETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLG  354 (510)
Q Consensus       278 ~~g~~-~~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (510)
                      ..++. .++.++..|+++++.+.  ++..++..++++++|+++++|+++..+++...                       
T Consensus       199 ~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~-----------------------  255 (705)
T PRK06060        199 AYGLGNSVWFPLATGGSAVINSAPVTPEAAAILSARFGPSVLYGVPNFFARVIDSCS-----------------------  255 (705)
T ss_pred             hcchhHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHhcCCeEEeeHHHHHHHHHHhcc-----------------------
Confidence            98875 47789999999999763  78888999999999999999999998865210                       


Q ss_pred             hcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhc-CCCeeeeccccccccceecccCCCCc
Q 010455          355 NMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESCSGCFTSLADVFN  433 (510)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~-g~~l~~~yG~tE~~~~~~~~~~~~~~  433 (510)
                                      ..++        ++||.+++||+++++++.+.+.+.+ ++++++.||+||++..+........ 
T Consensus       256 ----------------~~~~--------~slr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~-  310 (705)
T PRK06060        256 ----------------PDSF--------RSLRCVVSAGEALELGLAERLMEFFGGIPILDGIGSTEVGQTFVSNRVDEW-  310 (705)
T ss_pred             ----------------cccc--------cceeEEEEecCcCCHHHHHHHHHHcCCCceEeeeeccccCceEEeccCCCC-
Confidence                            0011        2899999999999999999999888 5899999999999865544332222 


Q ss_pred             cCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhhccCccccCCe-eeccCCccC
Q 010455          434 MIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGKN-PWQYTFKKL  509 (510)
Q Consensus       434 ~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDl-~~d~dG~~~  509 (510)
                      ..+++|+|+++++++|+| +++++++.|  +.|||+|+|++++.||+|+|+.+..  .+|||+|||+ ++|+||++.
T Consensus       311 ~~~~iG~p~~~~~v~i~d-~~g~~~~~g--~~GEl~i~g~~v~~GY~~~~~~~~~--~~~~~~TGDl~~~~~dG~l~  382 (705)
T PRK06060        311 RLGTLGRVLPPYEIRVVA-PDGTTAGPG--VEGDLWVRGPAIAKGYWNRPDSPVA--NEGWLDTRDRVCIDSDGWVT  382 (705)
T ss_pred             CcCcccccCCCcEEEEEC-CCCCCCCCC--CceEEEEccchhhhhhhCCCccccc--CCCcEECCeeEEECCCceEE
Confidence            347899999999999999 888777666  8999999999999999999986422  5799999999 999999764

>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=4.7e-50  Score=422.51  Aligned_cols=411  Identities=22%  Similarity=0.322  Sum_probs=317.5

Q ss_pred             CCCCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHH
Q 010455           40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM  119 (510)
Q Consensus        40 ~~~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~  119 (510)
                      ...+++.++|.++++++|+++|+++.   +      ..+||.||.++++++|.+|.+.|+++||+|+++++|++++++++
T Consensus        20 ~~~~~i~~~l~~~a~~~p~~~a~~~~---~------~~lTy~~l~~~~~~~a~~L~~~gi~~gd~V~i~~~n~~~~~~~~   90 (557)
T PRK07059         20 SQYPSLADLLEESFRQYADRPAFICM---G------KAITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVAI   90 (557)
T ss_pred             CCCCCHHHHHHHHHHHcCCCceEEEc---C------ceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHH
Confidence            45678999999999999999999875   4      47999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhh-----------
Q 010455          120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQK-----------  188 (510)
Q Consensus       120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-----------  188 (510)
                      +||+++|++++|++|..+.+++.++++.++++++|+++.....+.+....  ...+.++..........           
T Consensus        91 la~~~~G~~~v~v~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (557)
T PRK07059         91 AAVLRAGYVVVNVNPLYTPRELEHQLKDSGAEAIVVLENFATTVQQVLAK--TAVKHVVVASMGDLLGFKGHIVNFVVRR  168 (557)
T ss_pred             HHHHhcCeEEeccCcccCHHHHHHHHHccCceEEEEchhhHHHHHHhhcc--cCCceeEEeccccccccccccccccccc
Confidence            99999999999999999999999999999999999988765544333221  12222222211000000           


Q ss_pred             ---hHhhhcCceeeeHHHHHHcC-CCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhcc--cc
Q 010455          189 ---KEAEELGVSCFSWEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTG--KV  262 (510)
Q Consensus       189 ---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~--~~  262 (510)
                         ............++++.... ..........++++++++|||||||.||+|.++|.+++.++......+....  ..
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~  248 (557)
T PRK07059        169 VKKMVPAWSLPGHVRFNDALAEGARQTFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKKP  248 (557)
T ss_pred             ccccccccCCCCcccHHHHhhccCCCCCCCCCCCcCceEEEEeCCCCCCCCcEEEeecHHHHHHHHHHhhhhcccccccC
Confidence               00000011123345544433 1122233456789999999999999999999999999877654332221100  01


Q ss_pred             CCCCcEEEEecChHHHHHHH-HHHHHHhcCcEEEEeCC--CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccCh
Q 010455          263 CSEEDTYFSFLPLAHIYDQI-IETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGA  339 (510)
Q Consensus       263 ~~~~d~~~~~~pl~h~~g~~-~~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~  339 (510)
                      ....+.+++.+|++|.+++. ..+.++..|++.++.+.  ++..+++.++++++|++.++|.++..+...          
T Consensus       249 ~~~~~~~~~~~pl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~----------  318 (557)
T PRK07059        249 RPDQLNFVCALPLYHIFALTVCGLLGMRTGGRNILIPNPRDIPGFIKELKKYQVHIFPAVNTLYNALLNN----------  318 (557)
T ss_pred             CCCCcEEEEeCCcHHHHHHHHHHHHHHhhcceEEEecCCcCHHHHHHHHHHhCCeeeecCHHHHHHHHcC----------
Confidence            12345788899999998876 46678888888777653  889999999999999999999999988641          


Q ss_pred             hHHHHHHHHHHhhhhhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeeccccc
Q 010455          340 LSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTE  419 (510)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE  419 (510)
                                                 ......+++        ++|.++.||+++++.+.+.+.+.+|+++++.||+||
T Consensus       319 ---------------------------~~~~~~~~~--------~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE  363 (557)
T PRK07059        319 ---------------------------PDFDKLDFS--------KLIVANGGGMAVQRPVAERWLEMTGCPITEGYGLSE  363 (557)
T ss_pred             ---------------------------cCcCcCCch--------hheEEEeccccCCHHHHHHHHHHhCCCeeecccccc
Confidence                                       111112233        789999999999999999999888999999999999


Q ss_pred             cccceecccCCCCccCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhh-ccCccccC
Q 010455          420 SCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTG  498 (510)
Q Consensus       420 ~~~~~~~~~~~~~~~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~gw~~TG  498 (510)
                      ++.+++.........++++|+|+++++++|+| +++++++.|  +.|||+++|+.++.||+++++.+.+.| .+|||+||
T Consensus       364 ~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d-~~~~~~~~g--~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TG  440 (557)
T PRK07059        364 TSPVATCNPVDATEFSGTIGLPLPSTEVSIRD-DDGNDLPLG--EPGEICIRGPQVMAGYWNRPDETAKVMTADGFFRTG  440 (557)
T ss_pred             ccchhhcCCCCCCCcCCcccCccCCcEEEEEC-CCCCCCCCC--CceEEEEeCCccchhhhcCHHHHhhhcccCCceecC
Confidence            98876655443333457999999999999999 888777666  899999999999999999999998888 78999999


Q ss_pred             Ce-eeccCCccC
Q 010455          499 KN-PWQYTFKKL  509 (510)
Q Consensus       499 Dl-~~d~dG~~~  509 (510)
                      |+ ++|+||++.
T Consensus       441 Dl~~~~~~g~~~  452 (557)
T PRK07059        441 DVGVMDERGYTK  452 (557)
T ss_pred             cEEEEcCCCcEE
Confidence            99 999999754

>PRK08315 AMP-binding domain protein; Validated

Probab=100.00  E-value=5.3e-50  Score=422.59  Aligned_cols=400  Identities=23%  Similarity=0.367  Sum_probs=320.4

Q ss_pred             CCCCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHH
Q 010455           40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM  119 (510)
Q Consensus        40 ~~~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~  119 (510)
                      ....++.++|++.++++|+++|+++.   ++.    +.+||+||.++++++|..|.+.|+++|++|+++++|++++++++
T Consensus        13 ~~~~~l~~~l~~~~~~~~~~~ai~~~---~~~----~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~   85 (559)
T PRK08315         13 LLEQTIGQLLDRTAARYPDREALVYR---DQG----LRWTYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLTQ   85 (559)
T ss_pred             hhhccHHHHHHHHHHHCCCCeEEEEc---CCC----eEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHH
Confidence            45568999999999999999999876   443    67999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChh-----hHhhcCcc------------CCCCccEEEEecC
Q 010455          120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP-----SILSCLPR------------CCLYLKTIVSFAN  182 (510)
Q Consensus       120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-----~~~~~~~~------------~~~~~~~v~~~~~  182 (510)
                      |||+++|++++|++|..+.+++..+++.++++++|++++...     .+.+...+            .....+.++.++.
T Consensus        86 la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (559)
T PRK08315         86 FATAKIGAILVTINPAYRLSELEYALNQSGCKALIAADGFKDSDYVAMLYELAPELATCEPGQLQSARLPELRRVIFLGD  165 (559)
T ss_pred             HHHHHhCeEEEecCccCCHHHHHHHHHhcCCCEEEEeccccccchHHHHHHhhhhhhcccccccccccCCCceeEEeecc
Confidence            999999999999999999999999999999999999876432     11111110            0122333443332


Q ss_pred             CChhhhhHhhhcCceeeeHHHHHHcCC--C----CCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhh
Q 010455          183 VSSSQKKEAEELGVSCFSWEEFLQLGT--L----DCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMF  256 (510)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~  256 (510)
                      ...          .....++++.....  .    ........++++++++|||||||.||+|.++|+++..++......+
T Consensus       166 ~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~  235 (559)
T PRK08315        166 EKH----------PGMLNFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTHRNILNNGYFIGEAM  235 (559)
T ss_pred             cCC----------cccccHHHHHhhccccccccccchhccCCCCCcEEEEEcCCCCCCcceEEeeHHHHHHHHHHHHHhc
Confidence            110          11233444433220  0    1112234568899999999999999999999999999888877776


Q ss_pred             hhccccCCCCcEEEEecChHHHHHHHH-HHHHHhcCcEEEEeCC--CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHH
Q 010455          257 VVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNK  333 (510)
Q Consensus       257 ~~~~~~~~~~d~~~~~~pl~h~~g~~~-~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~  333 (510)
                           ++..+|+++..+|++|..++.. ++.++..|+++++...  ++..+++.++++++|+++++|.++..++...   
T Consensus       236 -----~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~~~~~~---  307 (559)
T PRK08315        236 -----KLTEEDRLCIPVPLYHCFGMVLGNLACVTHGATMVYPGEGFDPLATLAAVEEERCTALYGVPTMFIAELDHP---  307 (559)
T ss_pred             -----CCCCCceEEEecCcHHHHHHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHcCCeEEecchHHHHHHHhCc---
Confidence                 7889999999999999999875 7789999999986543  8999999999999999999999998776411   


Q ss_pred             hhccChhHHHHHHHHHHhhhhhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCC-ee
Q 010455          334 ISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAP-LT  412 (510)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~-l~  412 (510)
                                                        ..+..++        ++||.+++||++++.++.+.+.+.++.. ++
T Consensus       308 ----------------------------------~~~~~~~--------~~lr~~~~~G~~~~~~~~~~~~~~~~~~~l~  345 (559)
T PRK08315        308 ----------------------------------DFARFDL--------SSLRTGIMAGSPCPIEVMKRVIDKMHMSEVT  345 (559)
T ss_pred             ----------------------------------ccCCCCc--------hhhheeEecCCCCCHHHHHHHHHHcCCccee
Confidence                                              0111112        2899999999999999999998888765 99


Q ss_pred             eeccccccccceecccCCC--CccCCccccccCCeEEEEeecCC-CCcCCCCCCCcceEEEecCCccccccCCchhhhhh
Q 010455          413 QGYGLTESCSGCFTSLADV--FNMIGTVGVPMTTVEARLESVPE-MGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEV  489 (510)
Q Consensus       413 ~~yG~tE~~~~~~~~~~~~--~~~~~svG~p~~g~~i~ivd~~~-~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~  489 (510)
                      +.||+||++.+++......  ...+.++|+|+++++++|+| ++ ++.++.|  +.|||+|+|+.++.||+++++.+.+.
T Consensus       346 ~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d-~~~~~~~~~g--~~GEl~v~g~~~~~gy~~~~~~~~~~  422 (559)
T PRK08315        346 IAYGMTETSPVSTQTRTDDPLEKRVTTVGRALPHLEVKIVD-PETGETVPRG--EQGELCTRGYSVMKGYWNDPEKTAEA  422 (559)
T ss_pred             EEEcccccccceeecCcccchhhccCCCCccCCCcEEEEEc-CccCCcCCCC--CceEEEEECchhhhhhcCChhHHhhc
Confidence            9999999987665443322  22347899999999999999 55 7777665  89999999999999999999999888


Q ss_pred             h-ccCccccCCe-eeccCCccC
Q 010455          490 I-VDGWFHTGKN-PWQYTFKKL  509 (510)
Q Consensus       490 ~-~~gw~~TGDl-~~d~dG~~~  509 (510)
                      | .++||+|||+ ++|+||++.
T Consensus       423 ~~~~~~~~TGD~~~~~~dg~~~  444 (559)
T PRK08315        423 IDADGWMHTGDLAVMDEEGYVN  444 (559)
T ss_pred             CCCCCCEEccceEEEcCCceEE
Confidence            8 7899999999 999999764

>PLN03102 acyl-activating enzyme; Provisional

Probab=100.00  E-value=4.1e-50  Score=423.72  Aligned_cols=402  Identities=20%  Similarity=0.255  Sum_probs=303.5

Q ss_pred             CCCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHH
Q 010455           41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME  120 (510)
Q Consensus        41 ~~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~l  120 (510)
                      .+.++.++|+++++.+|+++|+.+.   +      .++||+||.++++++|++|.+.|+++||+|+|+++|++++++++|
T Consensus        12 ~~~~~~~~l~~~~~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~~a~~L~~~Gl~~gd~Vai~~~n~~e~~~~~l   82 (579)
T PLN03102         12 VPLTPITFLKRASECYPNRTSIIYG---K------TRFTWPQTYDRCCRLAASLISLNITKNDVVSVLAPNTPAMYEMHF   82 (579)
T ss_pred             ccccHHHHHHHHHHhCCCCeEEEEC---C------cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHH
Confidence            3467999999999999999999865   3      479999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCC----CCccEEEEecCCChhhhhHhhhcCc
Q 010455          121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCC----LYLKTIVSFANVSSSQKKEAEELGV  196 (510)
Q Consensus       121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~~~  196 (510)
                      ||+++|++++|+++.++.+++.++|+.++++++|++++....+.+......    .....++.+++.....     ....
T Consensus        83 a~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~  157 (579)
T PLN03102         83 AVPMAGAVLNPINTRLDATSIAAILRHAKPKILFVDRSFEPLAREVLHLLSSEDSNLNLPVIFIHEIDFPK-----RPSS  157 (579)
T ss_pred             HHHhcCcEEeeccccCCHHHHHHHHhccCCeEEEEChhhHHHHHHHHhhccccccccCceEEEeccccccc-----CCcc
Confidence            999999999999999999999999999999999999877665544322110    0011233333221100     0001


Q ss_pred             eeeeHHHHHHcCCCCCC-----CCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEE
Q 010455          197 SCFSWEEFLQLGTLDCE-----LPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFS  271 (510)
Q Consensus       197 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~  271 (510)
                      ...++.++.........     .....++++++|+|||||||.||+|+++|+++..........+     .....++++.
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~~~~l~  232 (579)
T PLN03102        158 EELDYECLIQRGEPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGW-----EMGTCPVYLW  232 (579)
T ss_pred             cccCHHHHHhccCCCCcccccccccCCCCCcEEEEeCCcCCCCCCEEEEecHHHHHHHHHHHhhc-----CCCCCCeEEe
Confidence            12345555443311110     1123568999999999999999999999999765544433222     4566788999


Q ss_pred             ecChHHHHHHHHHHHHHhcCcEEEEeCC-CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHH
Q 010455          272 FLPLAHIYDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYN  350 (510)
Q Consensus       272 ~~pl~h~~g~~~~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  350 (510)
                      .+|++|..++...+.+++.|+++++.+. ++..+++.|+++++|++.++|+++..|.+....                  
T Consensus       233 ~~pl~h~~g~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~------------------  294 (579)
T PLN03102        233 TLPMFHCNGWTFTWGTAARGGTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNSL------------------  294 (579)
T ss_pred             cCChhhhcchhHHHHHHHhcCcEEeeccCChHHHHHHHHHcCCeEEEeChHHHHHHHhCccc------------------
Confidence            9999999998777778889999887764 888999999999999999999999998652110                  


Q ss_pred             hhhhhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeeccccccccceecccCC
Q 010455          351 YKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLAD  430 (510)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~~~~~~~~  430 (510)
                                         +....        .+++.+++||++++..+.++++. +|+.+++.||+||+++.++.....
T Consensus       295 -------------------~~~~~--------~~~~~~~~gg~~~~~~~~~~~~~-~g~~i~~~YG~tE~~~~~~~~~~~  346 (579)
T PLN03102        295 -------------------DLSPR--------SGPVHVLTGGSPPPAALVKKVQR-LGFQVMHAYGLTEATGPVLFCEWQ  346 (579)
T ss_pred             -------------------ccCCc--------ccceEEEECCCCCCHHHHHHHHH-cCCeEEeecCccccCccccccccc
Confidence                               00001        15778999999999999998876 599999999999998654322110


Q ss_pred             C-------------CccCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhhccCcccc
Q 010455          431 V-------------FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHT  497 (510)
Q Consensus       431 ~-------------~~~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~gw~~T  497 (510)
                      .             ....+..+.+++++  ++++.+.+.+++.+.++.|||+|+|+.++.|||++|+.+.+.|.+|||+|
T Consensus       347 ~~~~~~~~~~~~~~~~~~g~~~~~~~~v--~i~~~~~~~~v~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~gw~~T  424 (579)
T PLN03102        347 DEWNRLPENQQMELKARQGVSILGLADV--DVKNKETQESVPRDGKTMGEIVIKGSSIMKGYLKNPKATSEAFKHGWLNT  424 (579)
T ss_pred             cccccCCcccccccccCCCcccccccce--EEeccccccccCCCCCCceEEEEECcchhhhhcCChhhhHhhhccCceec
Confidence            0             01123344455544  45553345555554446899999999999999999999999999999999


Q ss_pred             CCe-eeccCCccC
Q 010455          498 GKN-PWQYTFKKL  509 (510)
Q Consensus       498 GDl-~~d~dG~~~  509 (510)
                      ||+ ++|+||++.
T Consensus       425 GDlg~~d~dG~l~  437 (579)
T PLN03102        425 GDVGVIHPDGHVE  437 (579)
T ss_pred             CceEEEcCCCeEE
Confidence            999 999999764

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=100.00  E-value=1.6e-50  Score=460.80  Aligned_cols=401  Identities=21%  Similarity=0.283  Sum_probs=321.1

Q ss_pred             CCCCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHH
Q 010455           40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM  119 (510)
Q Consensus        40 ~~~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~  119 (510)
                      ...+++.++++++++++|+++|+++.   ++     +.+||+||.++++++|++|++ ++++||+|+++++|++++++++
T Consensus       612 ~~~~~l~~~~~~~a~~~p~~~a~~~~---~~-----~~~Ty~el~~~~~~~a~~L~~-~~~~g~~V~i~~~n~~~~~~~~  682 (1146)
T PRK08633        612 EALPPLAEAWIDTAKRNWSRLAVADS---TG-----GELSYGKALTGALALARLLKR-ELKDEENVGILLPPSVAGALAN  682 (1146)
T ss_pred             CCCCCHHHHHHHHHHhcCCCcEEEcC---CC-----CcCcHHHHHHHHHHHHHHHHH-hCCCCCeEEEECCCchHHHHHH
Confidence            45678999999999999999999753   22     479999999999999999987 4899999999999999999999


Q ss_pred             HHHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCc-cCCCCccEEEEecCCChhhhhHhhhcCcee
Q 010455          120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLP-RCCLYLKTIVSFANVSSSQKKEAEELGVSC  198 (510)
Q Consensus       120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  198 (510)
                      +||+++|++++|+++..+.+++.+++++++++.++++++..+.+.+... ........++..++......        ..
T Consensus       683 la~~~~G~v~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~  754 (1146)
T PRK08633        683 LALLLAGKVPVNLNYTASEAALKSAIEQAQIKTVITSRKFLEKLKNKGFDLELPENVKVIYLEDLKAKIS--------KV  754 (1146)
T ss_pred             HHHHHcCCEEEEeCCCcCHHHHHHHHHHcCCCEEEEcHHHHHHHhccCCchhcccCceEEEeehhccccc--------hh
Confidence            9999999999999999999999999999999999998776655532110 01122233443332211000        00


Q ss_pred             eeHHHHHHcCCCC------CCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEe
Q 010455          199 FSWEEFLQLGTLD------CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSF  272 (510)
Q Consensus       199 ~~~~~~~~~~~~~------~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~  272 (510)
                      ..+++.......+      .......++++++++|||||||.||+|.+||+++...+......+     ....+|++++.
T Consensus       755 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~  829 (1146)
T PRK08633        755 DKLTALLAARLLPARLLKRLYGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVF-----NLRNDDVILSS  829 (1146)
T ss_pred             HHHHHHHHhccCCHHHHHhhccCCCCCCCEEEEEECCCCCCCCceEEechHHHHHHHHHHHHhc-----CCCCCCEEEEc
Confidence            1122221111000      001344678999999999999999999999999999988877766     77889999999


Q ss_pred             cChHHHHHHHH-HHHHHhcCcEEEEeCC--CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHH
Q 010455          273 LPLAHIYDQII-ETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAY  349 (510)
Q Consensus       273 ~pl~h~~g~~~-~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  349 (510)
                      +|++|.+|+.. .+.++..|+++++.+.  ++..+++.++++++|++.++|++++.+++.                    
T Consensus       830 ~p~~h~~g~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~--------------------  889 (1146)
T PRK08633        830 LPFFHSFGLTVTLWLPLLEGIKVVYHPDPTDALGIAKLVAKHRATILLGTPTFLRLYLRN--------------------  889 (1146)
T ss_pred             CcHHHHHhHHHHHHHHHHCCCEEEEeCCCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhc--------------------
Confidence            99999999875 7789999999998764  899999999999999999999999987641                    


Q ss_pred             HhhhhhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeeccccccccceecccC
Q 010455          350 NYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLA  429 (510)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~~~~~~~  429 (510)
                                       +..++.++        +++|.+++||+++++++.+++++.+|+++++.||+||++.+++....
T Consensus       890 -----------------~~~~~~~~--------~~lr~~~~gg~~~~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~  944 (1146)
T PRK08633        890 -----------------KKLHPLMF--------ASLRLVVAGAEKLKPEVADAFEEKFGIRILEGYGATETSPVASVNLP  944 (1146)
T ss_pred             -----------------cccCcccC--------CCeeeEEEcCCcCCHHHHHHHHHHhCCCeecccccccCcceEEEecC
Confidence                             11122223        28999999999999999999999999999999999999877665432


Q ss_pred             CC---------CccCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhhcc----Cccc
Q 010455          430 DV---------FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVD----GWFH  496 (510)
Q Consensus       430 ~~---------~~~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~----gw~~  496 (510)
                      +.         ...++++|+|+||++++|+|.+++++++.|  +.|||+++|++++.||+++|+.+.+.|.+    |||+
T Consensus       945 ~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~g--~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~~~~~ 1022 (1146)
T PRK08633        945 DVLAADFKRQTGSKEGSVGMPLPGVAVRIVDPETFEELPPG--EDGLILIGGPQVMKGYLGDPEKTAEVIKDIDGIGWYV 1022 (1146)
T ss_pred             cccccccccccCCCCCCccccCCCCEEEEEcCCCCccCCCC--CceEEEEcCCCccccccCCccchHHHhhcCCCCCeEE
Confidence            21         123578999999999999994456666655  89999999999999999999999998866    9999


Q ss_pred             cCCe-eeccCCccC
Q 010455          497 TGKN-PWQYTFKKL  509 (510)
Q Consensus       497 TGDl-~~d~dG~~~  509 (510)
                      |||+ ++|+||++.
T Consensus      1023 TGD~~~~~~~g~l~ 1036 (1146)
T PRK08633       1023 TGDKGHLDEDGFLT 1036 (1146)
T ss_pred             CCCEEEEcCCceEE
Confidence            9999 999999864

>PRK07514 malonyl-CoA synthase; Validated

Probab=100.00  E-value=7.7e-50  Score=416.18  Aligned_cols=389  Identities=22%  Similarity=0.341  Sum_probs=315.6

Q ss_pred             CCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHH
Q 010455           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (510)
Q Consensus        42 ~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA  121 (510)
                      .+++.+++..++ .+|+++|+...   ++     +.+||+||.++++++|.+|++.|+++||+|+++++|+++++++++|
T Consensus         2 ~~~l~~~~~~~~-~~~~~~a~~~~---~~-----~~~Ty~eL~~~~~~la~~L~~~g~~~gd~v~i~~~~~~e~~v~~la   72 (504)
T PRK07514          2 NNNLFDALRAAF-ADRDAPFIETP---DG-----LRYTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLA   72 (504)
T ss_pred             CccHHHHHHHHh-hCCCCeEEEeC---CC-----CEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence            368999999999 99999998764   33     5899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCceeeeH
Q 010455          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW  201 (510)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  201 (510)
                      |+++|++++|+++..+.+++..+++.++++++++++.....+.......  ....++.++....             ..+
T Consensus        73 ~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-------------~~~  137 (504)
T PRK07514         73 TLRAGAVFLPLNTAYTLAELDYFIGDAEPALVVCDPANFAWLSKIAAAA--GAPHVETLDADGT-------------GSL  137 (504)
T ss_pred             HHHcCcEEEECCCCCCHHHHHHHHHhCCCcEEEEccchhHHHHHhhhcc--CCceEEEecCCCc-------------ccH
Confidence            9999999999999999999999999999999999987766554332211  1222333332211             011


Q ss_pred             HHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHH
Q 010455          202 EEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ  281 (510)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~  281 (510)
                      .+...............++++++++|||||||.||+|.++|+++...+......+     +...+|++++.+|++|..++
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~g~  212 (504)
T PRK07514        138 LEAAAAAPDDFETVPRGADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYW-----RFTPDDVLIHALPIFHTHGL  212 (504)
T ss_pred             HHhhhhcCcccCcccCCCCCeEEEEECCCCCCCCcEEEEecHHHHHHHHHHHHHh-----CCCCccEEEEecchHHHHHH
Confidence            1111111111122344678999999999999999999999999999988776666     77889999999999999998


Q ss_pred             HH-HHHHHhcCcEEEEeCC-CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhcccC
Q 010455          282 II-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKG  359 (510)
Q Consensus       282 ~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (510)
                      .. .+.+++.|+++++.+. ++..+++.+  .++|++.++|.++..++..                              
T Consensus       213 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~i--~~~t~~~~~P~~~~~l~~~------------------------------  260 (504)
T PRK07514        213 FVATNVALLAGASMIFLPKFDPDAVLALM--PRATVMMGVPTFYTRLLQE------------------------------  260 (504)
T ss_pred             HHHHHHHHhcCcEEEECCCCCHHHHHHHH--HhheeeecHHHHHHHHHcC------------------------------
Confidence            74 6779999999998876 899999998  4799999999999887641                              


Q ss_pred             CCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeeccccccccceecccCCCCccCCccc
Q 010455          360 MPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVG  439 (510)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~~~~~~~~~~~~~~svG  439 (510)
                             +..+...+        +++|.+++||+++++++.+.+.+.++.++++.||+||++..++..... ....+++|
T Consensus       261 -------~~~~~~~~--------~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~-~~~~~~~G  324 (504)
T PRK07514        261 -------PRLTREAA--------AHMRLFISGSAPLLAETHREFQERTGHAILERYGMTETNMNTSNPYDG-ERRAGTVG  324 (504)
T ss_pred             -------CCCCcccc--------cceeeEEecCCCCCHHHHHHHHHHhCCcceeecccccccccccCCccc-cccCcccc
Confidence                   11111122        289999999999999999999998899999999999998655433222 22347899


Q ss_pred             cccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhh-ccCccccCCe-eeccCCccC
Q 010455          440 VPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGKN-PWQYTFKKL  509 (510)
Q Consensus       440 ~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~gw~~TGDl-~~d~dG~~~  509 (510)
                      .|+++++++|+|++++.+++.|  +.|||+|+|++++.||+++++.+.+.| .+|||+|||+ ++|++|++.
T Consensus       325 ~~~~~~~v~i~d~~~~~~~~~g--~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~g~~~  394 (504)
T PRK07514        325 FPLPGVSLRVTDPETGAELPPG--EIGMIEVKGPNVFKGYWRMPEKTAEEFRADGFFITGDLGKIDERGYVH  394 (504)
T ss_pred             cCCCCcEEEEEECCCCCCCCCC--CceEEEEecCCccccccCCchhhhhhcccCCCeeecceEEEcCCccEE
Confidence            9999999999995566666555  899999999999999999999999989 6899999999 999999754

>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

Probab=100.00  E-value=1.2e-50  Score=437.65  Aligned_cols=387  Identities=18%  Similarity=0.258  Sum_probs=300.1

Q ss_pred             CCCCHHHHHHHHHhhCCC-CcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHH
Q 010455           41 GLESPWQFFCDSAKRIPN-NQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM  119 (510)
Q Consensus        41 ~~~sl~~~l~~~a~~~p~-~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~  119 (510)
                      +..++.++|.+.++++|+ ++|+.+.   +.     +.+||+||.++++++|++|.+. +++||+|+++++|++++++++
T Consensus       202 ~~~t~~~~l~~~~~~~p~~~~a~~~~---~~-----~~~Ty~el~~~~~~lA~~L~~~-~~~gd~Val~~~n~~e~~~~~  272 (718)
T PRK08043        202 PRETLYEALLSAQYRYGAGKPCIEDV---NF-----TPDSYRKLLKKTLFVGRILEKY-SVEGERIGLMLPNATISAAVI  272 (718)
T ss_pred             CCCCHHHHHHHHHHHhCCCCcceEcC---CC-----CcccHHHHHHHHHHHHHHHHHh-cCCCceEEEEcCCcHHHHHHH
Confidence            347899999999999998 5777532   11     4699999999999999999987 599999999999999999999


Q ss_pred             HHHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhh-cCccCCCCccEEEEecCCChhhhhHhhhcCcee
Q 010455          120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILS-CLPRCCLYLKTIVSFANVSSSQKKEAEELGVSC  198 (510)
Q Consensus       120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  198 (510)
                      |||+++|++++|+++.++.+++.+++++++++++|++.+..+.... ........... +.+.+....            
T Consensus       273 lA~~~~G~v~vpl~~~~~~~~l~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~------------  339 (718)
T PRK08043        273 FGASLRRRIPAMMNYTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWHLPEQLTQVRW-VYLEDLKDD------------  339 (718)
T ss_pred             HHHHHcCCcccccccCcCHHHHHHHHHHcCCcEEEEcHHHHhhccCCChhhhhccccE-EEhhhhhhh------------
Confidence            9999999999999999999999999999999999998765432110 01111111122 222211000            


Q ss_pred             eeHHH--H--HHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecC
Q 010455          199 FSWEE--F--LQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLP  274 (510)
Q Consensus       199 ~~~~~--~--~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p  274 (510)
                      ..+..  .  ..............++++++++|||||||.||||++||+++.+.+......+     +++.+|++++.+|
T Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~P  414 (718)
T PRK08043        340 VTTADKLWIFAHLLMPRLAQVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIA-----DFTPNDRFMSALP  414 (718)
T ss_pred             cchhHHHHHHHHHhCCccccCCCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhh-----CCCccCeEEEcCc
Confidence            00000  0  0000001111234678999999999999999999999999999888776666     7889999999999


Q ss_pred             hHHHHHHHH-HHHHHhcCcEEEEeCC--CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHh
Q 010455          275 LAHIYDQII-ETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNY  351 (510)
Q Consensus       275 l~h~~g~~~-~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  351 (510)
                      ++|.+++.. ++.+++.|+++++.+.  ++..+++.++++++|+++++|+++..+...                      
T Consensus       415 l~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~----------------------  472 (718)
T PRK08043        415 LFHSFGLTVGLFTPLLTGAEVFLYPSPLHYRIVPELVYDRNCTVLFGTSTFLGNYARF----------------------  472 (718)
T ss_pred             chhhhhhHHHHHHHHHcCCEEEEeCCcccHHHHHHHHHhcCCeEEEchHHHHHHhhhh----------------------
Confidence            999999865 7789999999998763  667888999999999999999998776431                      


Q ss_pred             hhhhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeeccccccccceecccCCC
Q 010455          352 KLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADV  431 (510)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~~~~~~~~~  431 (510)
                                       .+..++        ++||.+++||+++++++.+.+++.+|+.+++.||+||++.+++...+..
T Consensus       473 -----------------~~~~~~--------~~lr~i~~gg~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~  527 (718)
T PRK08043        473 -----------------ANPYDF--------ARLRYVVAGAEKLQESTKQLWQDKFGLRILEGYGVTECAPVVSINVPMA  527 (718)
T ss_pred             -----------------cCcccc--------cceEEEEEeCccCCHHHHHHHHHHcCCCeecccCcccccceEEecCCcc
Confidence                             011122        2899999999999999999999989999999999999987766544332


Q ss_pred             CccCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccC--Cchh-------hhhhh-ccCccccCCe-
Q 010455          432 FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYK--RPDL-------TEEVI-VDGWFHTGKN-  500 (510)
Q Consensus       432 ~~~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~--~~~~-------~~~~~-~~gw~~TGDl-  500 (510)
                       ..++++|+|+||++++|+| +++.      ++.|||+++|++++.||++  +++.       +.+.+ .+|||+|||+ 
T Consensus       528 -~~~~svG~p~pg~~~~i~d-~~~~------~~~Gel~v~g~~v~~GY~~~e~~~~~~~~~~~~~~~~~~~gw~~TGDlg  599 (718)
T PRK08043        528 -AKPGTVGRILPGMDARLLS-VPGI------EQGGRLQLKGPNIMNGYLRVEKPGVLEVPTAENARGEMERGWYDTGDIV  599 (718)
T ss_pred             -cCCCCCCCcCCCCeeEEec-CCCC------CCceEEEEecCCccccccCCCCcccccccccccccccccCCeEecCCEE
Confidence             2358999999999999998 5542      2569999999999999998  4442       22222 5799999999 


Q ss_pred             eeccCCccC
Q 010455          501 PWQYTFKKL  509 (510)
Q Consensus       501 ~~d~dG~~~  509 (510)
                      ++|+||++.
T Consensus       600 ~~d~dG~l~  608 (718)
T PRK08043        600 RFDEQGFVQ  608 (718)
T ss_pred             EEcCCCcEE
Confidence            999999864

>PRK06188 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.9e-50  Score=420.20  Aligned_cols=393  Identities=21%  Similarity=0.241  Sum_probs=317.8

Q ss_pred             CCCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHH
Q 010455           41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME  120 (510)
Q Consensus        41 ~~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~l  120 (510)
                      ++.|+.++|.++++++|+++|+++.   +      +.+||.||.++++++|..|.+.|+++|++|+++++|+++++++++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~gv~~~~~V~i~~~~~~~~~~~~l   80 (524)
T PRK06188         10 SGATYGHLLVSALKRYPDRPALVLG---D------TRLTYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIG   80 (524)
T ss_pred             CCccHHHHHHHHHHHCCCCeEEEEC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence            4578999999999999999999865   3      579999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCC-ChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCceee
Q 010455          121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQEN-KIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCF  199 (510)
Q Consensus       121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  199 (510)
                      ||+++|+++++++|..+.+++..+++.++++.+++++. ....+.+. ......+..++.+......            .
T Consensus        81 a~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------------~  147 (524)
T PRK06188         81 AAQLAGLRRTALHPLGSLDDHAYVLEDAGISTLIVDPAPFVERALAL-LARVPSLKHVLTLGPVPDG------------V  147 (524)
T ss_pred             HHHHhCCEEEecccCCCHHHHHHHHHhcCceEEEEecchhhHHHHHH-hhhcCCceEEEEeCCccch------------h
Confidence            99999999999999999999999999999999999876 33332221 1222334445544432110            0


Q ss_pred             eHHHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHH
Q 010455          200 SWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIY  279 (510)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~  279 (510)
                      .+.+...............++++++++|||||||.||+|.++|.++...+......+     .+..+|++++.+|++|..
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~l~~~pl~~~~  222 (524)
T PRK06188        148 DLLAAAAKFGPAPLVAAALPPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLAEW-----EWPADPRFLMCTPLSHAG  222 (524)
T ss_pred             hHHHhhhccCcccccccCCCCCeEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhc-----CCCcCcEEEEecCchhhh
Confidence            011111111111111223456699999999999999999999999999888877776     788999999999999988


Q ss_pred             HHHHHHHHHhcCcEEEEeCC-CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhccc
Q 010455          280 DQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKK  358 (510)
Q Consensus       280 g~~~~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (510)
                      ++. ++.+++.|+++++.+. ++..+++.++++++|+++++|+++..+++..                            
T Consensus       223 g~~-~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~----------------------------  273 (524)
T PRK06188        223 GAF-FLPTLLRGGTVIVLAKFDPAEVLRAIEEQRITATFLVPTMIYALLDHP----------------------------  273 (524)
T ss_pred             hHH-HHHHHHcCCEEEEcCCCCHHHHHHHHHHhCCEEEEehHHHHHHHHhCc----------------------------
Confidence            874 5678999999999876 8999999999999999999999999887521                            


Q ss_pred             CCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeeccccccccceecccCCC-----Cc
Q 010455          359 GMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADV-----FN  433 (510)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~~~~~~~~~-----~~  433 (510)
                               .....++        +++|.+++||++++++..+.+.+.++..+++.||+||++..+.......     ..
T Consensus       274 ---------~~~~~~l--------~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~  336 (524)
T PRK06188        274 ---------DLRTRDL--------SSLETVYYGASPMSPVRLAEAIERFGPIFAQYYGQTEAPMVITYLRKRDHDPDDPK  336 (524)
T ss_pred             ---------CccCCCC--------cceeEEEEcCCCCCHHHHHHHHHHhCchhhheeCccccCCceeecCchhccccccc
Confidence                     0111122        2899999999999999888888888999999999999976555432221     22


Q ss_pred             cCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhhccCccccCCe-eeccCCccC
Q 010455          434 MIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGKN-PWQYTFKKL  509 (510)
Q Consensus       434 ~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDl-~~d~dG~~~  509 (510)
                      ...++|+|++|++++|+| +++++++.|  +.|||+++|+.++.||+++++.+.+.|.+|||+|||+ ++|+||++.
T Consensus       337 ~~~~~G~p~~g~~v~i~~-~~~~~~~~g--~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~  410 (524)
T PRK06188        337 RLTSCGRPTPGLRVALLD-EDGREVAQG--EVGEICVRGPLVMDGYWNRPEETAEAFRDGWLHTGDVAREDEDGFYY  410 (524)
T ss_pred             cCCccccccCCcEEEEEc-CCCCCCCCC--CeeEEEEECcchhhhhcCChHHhhhhhcCCceeecceEEEcCCccEE
Confidence            347899999999999999 788877665  8999999999999999999999999899999999999 999999754

>PRK06145 acyl-CoA synthetase; Validated

Probab=100.00  E-value=8.3e-50  Score=415.13  Aligned_cols=385  Identities=21%  Similarity=0.277  Sum_probs=312.7

Q ss_pred             CCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHH
Q 010455           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (510)
Q Consensus        42 ~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA  121 (510)
                      +.++.++|+++++++|+++|+++.   +      +.+||.||.+++.++|.+|.+.|+++|++|+++++|++++++++||
T Consensus         1 ~~~~~~~~~~~~~~~~~~~a~~~~---~------~~~ty~el~~~v~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la   71 (497)
T PRK06145          1 MFNLSASIAFHARRTPDRAALVYR---D------QEISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFA   71 (497)
T ss_pred             CccHHHHHHHHHHHCCCceEEEEC---C------cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence            357889999999999999999865   3      4799999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCceeeeH
Q 010455          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW  201 (510)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  201 (510)
                      |+++|++++|+++..+.+++..+++.++++.++++++...... .       ....+..+....             ..+
T Consensus        72 ~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~-~-------~~~~~~~~~~~~-------------~~~  130 (497)
T PRK06145         72 ASYLGAVFLPINYRLAADEVAYILGDAGAKLLLVDEEFDAIVA-L-------ETPKIVIDAAAQ-------------ADS  130 (497)
T ss_pred             HHhcCcEEEecccccCHHHHHHHHHhcCCcEEEEccchhhhhh-c-------ccceEEecCccc-------------chh
Confidence            9999999999999999999999999999999999876543221 0       011222221110             001


Q ss_pred             HHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHH
Q 010455          202 EEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ  281 (510)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~  281 (510)
                      ..+..............++++++++|||||||.||+|.++|+++...+......+     ++..+|+++..+|++|.+++
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~~~  205 (497)
T PRK06145        131 RRLAQGGLEIPPQAAVAPTDLVRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVIAL-----GLTASERLLVVGPLYHVGAF  205 (497)
T ss_pred             HHHhccCCCCCCCCCCCccceEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhh-----CCCCCcEEEEecCchhHhHH
Confidence            1111111111112234678999999999999999999999999987766555555     77899999999999999998


Q ss_pred             HH-HHHHHhcCcEEEEeCC-CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhcccC
Q 010455          282 II-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKG  359 (510)
Q Consensus       282 ~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (510)
                      .. .+.+++.|+++++.+. ++..+++.++++++|++.++|+++..++...                             
T Consensus       206 ~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~ll~~~-----------------------------  256 (497)
T PRK06145        206 DLPGIAVLWVGGTLRIHREFDPEAVLAAIERHRLTCAWMAPVMLSRVLTVP-----------------------------  256 (497)
T ss_pred             HHHHHHHHhccCEEEECCcCCHHHHHHHHHHhCCeEEEehHHHHHHHHcCC-----------------------------
Confidence            64 5678999999988775 9999999999999999999999999886411                             


Q ss_pred             CCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhc-CCCeeeeccccccccceecccCC-CCccCCc
Q 010455          360 MPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESCSGCFTSLAD-VFNMIGT  437 (510)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~-g~~l~~~yG~tE~~~~~~~~~~~-~~~~~~s  437 (510)
                              ..+..+++        ++|.+++||++++.++.+++.+.+ +..+++.||+||++..++..... .....++
T Consensus       257 --------~~~~~~~~--------~l~~~~~gG~~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~  320 (497)
T PRK06145        257 --------DRDRFDLD--------SLAWCIGGGEKTPESRIRDFTRVFTRARYIDAYGLTETCSGDTLMEAGREIEKIGS  320 (497)
T ss_pred             --------Cccccccc--------cceEEEecCCCCCHHHHHHHHHHcCCCceEEeecCcccCCcceeccCccccccCCC
Confidence                    01111222        789999999999999999998888 67899999999998865543322 1223478


Q ss_pred             cccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhhccCccccCCe-eeccCCccC
Q 010455          438 VGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGKN-PWQYTFKKL  509 (510)
Q Consensus       438 vG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDl-~~d~dG~~~  509 (510)
                      +|+|+++++++++| +++..++.+  +.|||+++|+.++.||+++++.+.+.|.++||+|||+ ++|+||++.
T Consensus       321 ~G~~~~~~~~~i~~-~~~~~~~~~--~~Gel~v~g~~~~~Gy~~~~~~~~~~~~~~~~~TGDl~~~~~~g~l~  390 (497)
T PRK06145        321 TGRALAHVEIRIAD-GAGRWLPPN--MKGEICMRGPKVTKGYWKDPEKTAEAFYGDWFRSGDVGYLDEEGFLY  390 (497)
T ss_pred             cccCCCCceEEEEC-CCCCCCCCC--CceEEEEECcchhhhhcCChHHHHHHHhCCCeeccceEEEcCCCcEE
Confidence            99999999999999 888776655  8999999999999999999999999999999999999 999999764

>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated

Probab=100.00  E-value=7.7e-50  Score=417.35  Aligned_cols=396  Identities=23%  Similarity=0.317  Sum_probs=323.3

Q ss_pred             CHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHHH
Q 010455           44 SPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACN  123 (510)
Q Consensus        44 sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA~~  123 (510)
                      +++++|+..++++|+++|+.+.   +      +.+||+||.+++.++|++|++.|+++|++|+++++|+.++++++|||+
T Consensus         1 ~~~~~~~~~~~~~p~~~a~~~~---~------~~~ty~~l~~~v~~~a~~l~~~g~~~~~~V~i~~~n~~~~~~~~lA~~   71 (515)
T TIGR03098         1 LLHHLLEDAAARLPDATALVHH---D------RTLTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAA   71 (515)
T ss_pred             CHHHHHHHHHHHCCCCeEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHH
Confidence            4788999999999999999865   3      479999999999999999999999999999999999999999999999


Q ss_pred             hcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCceeeeHHH
Q 010455          124 SQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEE  203 (510)
Q Consensus       124 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (510)
                      ++|++++|+++..+.+++..+++.++++++|++......+....... ..+..++.+++......     .......|++
T Consensus        72 ~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~~~~~~  145 (515)
T TIGR03098        72 LAGGVFVPINPLLKAEQVAHILADCNVRLLVTSSERLDLLHPALPGC-HDLRTLILVGEPAHASE-----GGGESPSWPK  145 (515)
T ss_pred             hcCEEEEeCCCCCCHHHHHHHHHcCCCeEEEEccchhhhhHhhhhcc-cccceEEEecCcccccC-----CccccccHHH
Confidence            99999999999999999999999999999999887766554433322 34455555554321100     0112234555


Q ss_pred             HHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHH
Q 010455          204 FLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII  283 (510)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~  283 (510)
                      +...... ........+++++++|||||||.||+|.+||+++...+......+     .+..+|++++.+|++|.+++..
T Consensus       146 ~~~~~~~-~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~~~~  219 (515)
T TIGR03098       146 LLALGDA-DPPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYL-----ENRPDDRLLAVLPLSFDYGFNQ  219 (515)
T ss_pred             hhccccc-cccCCCCcCCeEEEEECCCCCCCCceEEEecHHHHHHHHHHHHHh-----CCCcccEEEEECchhhHhHHHH
Confidence            5433221 122334567899999999999999999999999999888877666     7788999999999999999988


Q ss_pred             HHHHHhcCcEEEEeCC-CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhcccCCCC
Q 010455          284 ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQ  362 (510)
Q Consensus       284 ~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (510)
                      ++.++..|+++++.+. ++..+++.++++++|++.++|+++..+....                                
T Consensus       220 ~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~--------------------------------  267 (515)
T TIGR03098       220 LTTAFYVGATVVLHDYLLPRDVLKALEKHGITGLAAVPPLWAQLAQLD--------------------------------  267 (515)
T ss_pred             HHHHHHcCCEEEEcCCCCHHHHHHHHHHcCCceEecChHHHHHHHhcc--------------------------------
Confidence            8899999999998875 8999999999999999999999998875410                                


Q ss_pred             CCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhc-CCCeeeeccccccccceecccCCCCccCCccccc
Q 010455          363 NKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVP  441 (510)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~-g~~l~~~yG~tE~~~~~~~~~~~~~~~~~svG~p  441 (510)
                            .+..++        .++|.+++||+++++++.+.+++.+ ++.+++.||+||++.............++++|+|
T Consensus       268 ------~~~~~~--------~~l~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~vG~~  333 (515)
T TIGR03098       268 ------WPESAA--------PSLRYLTNSGGAMPRATLSRLRSFLPNARLFLMYGLTEAFRSTYLPPEEVDRRPDSIGKA  333 (515)
T ss_pred             ------cCCCCc--------cceEEEEecCCcCCHHHHHHHHHHCCCCeEeeeeccccccceEecccccccCCCCCccee
Confidence                  000011        3899999999999999999999988 6889999999999865554333323345899999


Q ss_pred             cCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhhc------------cCccccCCe-eeccCCcc
Q 010455          442 MTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV------------DGWFHTGKN-PWQYTFKK  508 (510)
Q Consensus       442 ~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~------------~gw~~TGDl-~~d~dG~~  508 (510)
                      +++++++|+| +++..++.+  +.|||+++|+.++.||+++++.+.+.|.            ++||+|||+ ++|+||++
T Consensus       334 ~~~~~~~i~~-~~~~~~~~~--~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l  410 (515)
T TIGR03098       334 IPNAEVLVLR-EDGSECAPG--EEGELVHRGALVAMGYWNDPEKTAERFRPLPPRPGELHLPELAVWSGDTVRRDEEGFL  410 (515)
T ss_pred             cCCCEEEEEC-CCCCCCCCC--CceEEEEcCchhhccccCCchhhhhhhhccCCccccccccccceeccceEEEcCCceE
Confidence            9999999999 888776655  8999999999999999999998877662            348999999 99999976


Q ss_pred             C
Q 010455          509 L  509 (510)
Q Consensus       509 ~  509 (510)
                      .
T Consensus       411 ~  411 (515)
T TIGR03098       411 Y  411 (515)
T ss_pred             E
Confidence            4

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.

>PRK10946 entE enterobactin synthase subunit E; Provisional

Probab=100.00  E-value=6.5e-50  Score=419.14  Aligned_cols=393  Identities=17%  Similarity=0.194  Sum_probs=314.3

Q ss_pred             CCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHH
Q 010455           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (510)
Q Consensus        42 ~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA  121 (510)
                      +.++.++|+++++  |+++|+++.   +      +.+||+||.++++++|+.|.+.|+++|++|+++++|+++++++++|
T Consensus        24 ~~~~~~~~~~~a~--p~~~a~~~~---~------~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~v~~~n~~~~~~~~la   92 (536)
T PRK10946         24 DLPLTDILTRHAA--SDAIAVICG---E------RQFSYRELNQASDNLACSLRRQGIKPGDTALVQLGNVAEFYITFFA   92 (536)
T ss_pred             CccHHHHHHHhhC--CCCeEEEeC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCChHHHHHHHHH
Confidence            4689999999887  999999865   3      5799999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCCh----hhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCce
Q 010455          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI----PSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS  197 (510)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  197 (510)
                      |+++|++++++.+.....++..+++.++++.++++++..    ....+........+..++...+..             
T Consensus        93 ~~~~G~v~v~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-------------  159 (536)
T PRK10946         93 LLKLGVAPVNALFSHQRSELNAYASQIEPALLIADRQHALFSDDDFLNTLVAEHSSLRVVLLLNDDG-------------  159 (536)
T ss_pred             HHHcCeEEecCCccccHHHHHHHHhhcCCCEEEEeccccccchHHHHHHHHhhCCCceEEEEecCCC-------------
Confidence            999999888777777788899999999999999986531    111122222223344444332211             


Q ss_pred             eeeHHHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHH
Q 010455          198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAH  277 (510)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h  277 (510)
                      ...+.+++.............++++++++|||||||.||+|++||+++...+......+     .+..+|++++.+|++|
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~-----~~~~~~~~l~~~p~~h  234 (536)
T PRK10946        160 EHSLDDAINHPAEDFTATPSPADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEIC-----GFTPQTRYLCALPAAH  234 (536)
T ss_pred             CccHHHHhhCcccccccCCCCCCCeEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhc-----CCCCCceEEEecCccc
Confidence            12233343332222222344678999999999999999999999999999998877766     7889999999999999


Q ss_pred             HHHHHH--HHHHHhcCcEEEEeCC-CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhh
Q 010455          278 IYDQII--ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLG  354 (510)
Q Consensus       278 ~~g~~~--~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (510)
                      .+++..  ++.++..|+++++.+. ++..+++.++++++|++.++|.++..++........                   
T Consensus       235 ~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~-------------------  295 (536)
T PRK10946        235 NYPMSSPGALGVFLAGGTVVLAPDPSATLCFPLIEKHQVNVTALVPPAVSLWLQAIAEGGS-------------------  295 (536)
T ss_pred             cccchhhhHHHHhhcCcEEEECCCCCHHHHHHHHHHhCCcEEEeChHHHHHHHhhhcccCc-------------------
Confidence            888753  6778999999998764 889999999999999999999999998753211100                   


Q ss_pred             hcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeeccccccccceecccCCCCcc
Q 010455          355 NMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNM  434 (510)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~~~~~~~~~~~~  434 (510)
                                      ...+        +++|.+++||+++++++.+.+.+.+|+++++.||+||++.............
T Consensus       296 ----------------~~~~--------~~l~~v~~gg~~l~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~~  351 (536)
T PRK10946        296 ----------------RAQL--------ASLKLLQVGGARLSETLARRIPAELGCQLQQVFGMAEGLVNYTRLDDSDERI  351 (536)
T ss_pred             ----------------cccc--------cceeEEEECCCCCCHHHHHHHHHhcCCeEEEeecccccceeeecCCCccccc
Confidence                            0001        2899999999999999999999888999999999999754433221122233


Q ss_pred             CCcccccc-CCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhh-ccCccccCCe-eeccCCccC
Q 010455          435 IGTVGVPM-TTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGKN-PWQYTFKKL  509 (510)
Q Consensus       435 ~~svG~p~-~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~gw~~TGDl-~~d~dG~~~  509 (510)
                      .+++|+|+ |+..++|+| +++++++.|  +.|||+++|+.++.||+++++.+.+.| .||||+|||+ ++|+||++.
T Consensus       352 ~~~~G~p~~~~~~v~i~d-~~~~~~~~g--~~Gel~v~g~~~~~GY~~~~~~t~~~~~~d~~~~TGDl~~~d~~G~l~  426 (536)
T PRK10946        352 FTTQGRPMSPDDEVWVAD-ADGNPLPQG--EVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLVSIDPDGYIT  426 (536)
T ss_pred             cccCCcccCCCceEEEEC-CCCCCCCCC--CccEEEEecCccchhhcCCcccchhhcccCCceecCceEEECCCCcEE
Confidence            47899998 899999999 888777766  999999999999999999999999998 7899999999 999999864

>PRK12476 putative fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=5e-50  Score=426.07  Aligned_cols=393  Identities=17%  Similarity=0.191  Sum_probs=300.1

Q ss_pred             CCCCHHHHHHHHHhhCCCCcceeeeeccCC---CCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHH
Q 010455           41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDG---KVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWII  117 (510)
Q Consensus        41 ~~~sl~~~l~~~a~~~p~~~a~~~~~~~~~---~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~  117 (510)
                      +..++.++++++++++|+++|+++.   +.   ..+.++.+||+||.++++++|++|.+. +++||+|+++++|++++++
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~a~~~~---~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~V~l~~~n~~e~~~  107 (612)
T PRK12476         32 PGTTLISLIERNIANVGDTVAYRYL---DHSHSAAGCAVELTWTQLGVRLRAVGARLQQV-AGPGDRVAILAPQGIDYVA  107 (612)
T ss_pred             ccCcHHHHHHHHHHhCCCceEEEEE---ccCCCCCCcceEEeHHHHHHHHHHHHHHHHHh-cCCCCEEEEECCCChhHHH
Confidence            3468999999999999999999875   32   123346899999999999999999987 9999999999999999999


Q ss_pred             HHHHHHhcCCeEEEe-cCCCC--HHHHHHHHHhcCccEEEEcCCChhhHhhcCccCC-CCccEEEEecCCChhhhhHhhh
Q 010455          118 AMEACNSQAITYVPL-YDTLG--ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCC-LYLKTIVSFANVSSSQKKEAEE  193 (510)
Q Consensus       118 ~~lA~~~~G~~~v~l-~~~~~--~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~  193 (510)
                      ++|||+++|++++|+ ++..+  .+++.++++.++++++|++++....+.+...... .....++.+++...        
T Consensus       108 ~~lA~~~aG~v~vpl~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--------  179 (612)
T PRK12476        108 GFFAAIKAGTIAVPLFAPELPGHAERLDTALRDAEPTVVLTTTAAAEAVEGFLRNLPRLRRPRVIAIDAIPD--------  179 (612)
T ss_pred             HHHHHHHcCceeEecCCCCcchhHHHHHHHHHhCCCCEEEEcHHHHHHHHHHHhhcccccCceEEEeccccc--------
Confidence            999999999999999 57766  7899999999999999998776654433221110 01123333322110        


Q ss_pred             cCceeeeHHHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhcccc-CCCCcEEEEe
Q 010455          194 LGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKV-CSEEDTYFSF  272 (510)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~-~~~~d~~~~~  272 (510)
                                   ............++++++|+|||||||.||||+++|+++.+++......+     . +.++++++++
T Consensus       180 -------------~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~~~~~l~~  241 (612)
T PRK12476        180 -------------SAGESFVPVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILSI-----DLLDRNTHGVSW  241 (612)
T ss_pred             -------------cccccccCCCCCCCceEEEEeCCCCCCCCceEEeeHHHHHHHHHHHHHHh-----ccCCCCceEEEe
Confidence                         00001111234568999999999999999999999999988877665555     5 6788999999


Q ss_pred             cChHHHHHHHHHHHHHhcCcEEEEeCC-----CHhhHHHHHh--hhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHH
Q 010455          273 LPLAHIYDQIIETHCIHKGCSIGFWRG-----DVRYLMEDIQ--ELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLF  345 (510)
Q Consensus       273 ~pl~h~~g~~~~l~~l~~G~~~v~~~~-----~~~~~~~~i~--~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~  345 (510)
                      +|++|..|+...+.+++.|+++++...     ++..+++.++  +++++.++.+|.++..++.....             
T Consensus       242 ~Pl~h~~g~~~~~~~~~~gg~~~~~~~~~~~~~p~~~~~~i~~~~~~~t~~~~~P~~~~~l~~~~~~-------------  308 (612)
T PRK12476        242 LPLYHDMGLSMIGFPAVYGGHSTLMSPTAFVRRPQRWIKALSEGSRTGRVVTAAPNFAYEWAAQRGL-------------  308 (612)
T ss_pred             CCcccccchHHHHHHHhcCCeEEEECHHHHHHHHHHHHHHHhhhccCCeEEEeCCcHHHHHHHHhcC-------------
Confidence            999999998765555555555555431     7889999995  58999999999998887642100             


Q ss_pred             HHHHHhhhhhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhc---CC---Ceeeeccccc
Q 010455          346 EFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS---GA---PLTQGYGLTE  419 (510)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~---g~---~l~~~yG~tE  419 (510)
                                          ......++++        ++| +++||++++.++.+++.+.|   |+   .+++.||+||
T Consensus       309 --------------------~~~~~~~~l~--------~lr-~~~gg~~~~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE  359 (612)
T PRK12476        309 --------------------PAEGDDIDLS--------NVV-LIIGSEPVSIDAVTTFNKAFAPYGLPRTAFKPSYGIAE  359 (612)
T ss_pred             --------------------hhhhcCcchh--------Hhe-EEecccCCCHHHHHHHHHHHHhcCCCccccccccchhh
Confidence                                0001112333        789 99999999999999998877   44   4899999999


Q ss_pred             cccceecccCCCC--------------------------ccCCccccccCCeEEEEeecCC-CCcCCCCCCCcceEEEec
Q 010455          420 SCSGCFTSLADVF--------------------------NMIGTVGVPMTTVEARLESVPE-MGYDALSSVPRGEICLRG  472 (510)
Q Consensus       420 ~~~~~~~~~~~~~--------------------------~~~~svG~p~~g~~i~ivd~~~-~~~~~~~~~~~Gei~v~g  472 (510)
                      ++..++....+..                          ...+++|+|+||++++|+| ++ +++++.|  +.|||+++|
T Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~~~~g~~v~ivd-~~~g~~~~~g--~~GEl~v~g  436 (612)
T PRK12476        360 ATLFVATIAPDAEPSVVYLDREQLGAGRAVRVAADAPNAVAHVSCGQVARSQWAVIVD-PDTGAELPDG--EVGEIWLHG  436 (612)
T ss_pred             hheeeeccCCCCCceEEEEcHHHhhCCCeeecCCCCCCcceeEeCCCcCCCCEEEEEe-CCCCcCCCCC--CEEEEEEcC
Confidence            8765543221100                          0125899999999999999 66 8777766  899999999


Q ss_pred             CCccccccCCchhhhhhhc-------------------cCccccCCe-eeccCCccC
Q 010455          473 NTLFSGYYKRPDLTEEVIV-------------------DGWFHTGKN-PWQYTFKKL  509 (510)
Q Consensus       473 ~~v~~gY~~~~~~~~~~~~-------------------~gw~~TGDl-~~d~dG~~~  509 (510)
                      ++++.|||++|+.+.+.|.                   ++||+|||+ +++ ||++.
T Consensus       437 ~~v~~GY~~~~~~t~~~f~~~~~~~~~~g~~~~~~~~~~~w~~TGDlg~~~-dG~l~  492 (612)
T PRK12476        437 DNIGRGYWGRPEETERTFGAKLQSRLAEGSHADGAADDGTWLRTGDLGVYL-DGELY  492 (612)
T ss_pred             CcccccccCChHHHHHHHhhhhccccccccccccccCCCCeeeccccceeE-CCEEE
Confidence            9999999999999998883                   249999999 985 88764

>PLN03052 acetate--CoA ligase; Provisional

Probab=100.00  E-value=1.5e-49  Score=426.02  Aligned_cols=400  Identities=16%  Similarity=0.134  Sum_probs=303.0

Q ss_pred             HHHHHHHHhhCCCCcceeeeeccCCC--CCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHHH
Q 010455           46 WQFFCDSAKRIPNNQMLGGRKVSDGK--VGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACN  123 (510)
Q Consensus        46 ~~~l~~~a~~~p~~~a~~~~~~~~~~--~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA~~  123 (510)
                      ..+|+++++++|+++|+++.   ++.  .+..+.+||+||.++++++|++|+++|+++||+|+++++|++++++++|||+
T Consensus       178 ~~~l~~~~~~~pd~~Ai~~~---~e~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrVai~~pn~~e~via~LA~~  254 (728)
T PLN03052        178 ECCLTPKPSKTDDSIAIIWR---DEGSDDLPVNRMTLSELRSQVSRVANALDALGFEKGDAIAIDMPMNVHAVIIYLAII  254 (728)
T ss_pred             HHHHHHHhccCCCCeEEEEE---CCCCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHH
Confidence            44676766678999999987   532  2245789999999999999999999999999999999999999999999999


Q ss_pred             hcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCCh---------hhHhhcCccCCCCccEEEEecCCChhhhhHhhhc
Q 010455          124 SQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI---------PSILSCLPRCCLYLKTIVSFANVSSSQKKEAEEL  194 (510)
Q Consensus       124 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  194 (510)
                      ++|++++|++|.++.+++..++++++++++|+++...         ..+.+..    .  ..++++........   ...
T Consensus       255 ~~Gav~vpi~p~~~~~~l~~rl~~~~~k~lit~d~~~~~gk~~~~~~~~~~~~----~--~~~iv~~~~~~~~~---~~~  325 (728)
T PLN03052        255 LAGCVVVSIADSFAPSEIATRLKISKAKAIFTQDVIVRGGKSIPLYSRVVEAK----A--PKAIVLPADGKSVR---VKL  325 (728)
T ss_pred             HcCCEEEeeCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHhc----C--CcEEEEeCCCCccc---ccc
Confidence            9999999999999999999999999999999987532         1111111    1  12333322110000   000


Q ss_pred             CceeeeHHHHHHcCCC---C--CCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEE
Q 010455          195 GVSCFSWEEFLQLGTL---D--CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTY  269 (510)
Q Consensus       195 ~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~  269 (510)
                      ......|++++.....   .  .......++++++|+|||||||.||||+++|.+++..+......+     .+.++|++
T Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~IlyTSGTTG~PKgVv~sh~~~l~~~~~~~~~~-----~l~~~d~~  400 (728)
T PLN03052        326 REGDMSWDDFLARANGLRRPDEYKAVEQPVEAFTNILFSSGTTGEPKAIPWTQLTPLRAAADAWAHL-----DIRKGDIV  400 (728)
T ss_pred             ccCCccHHHHHhccccccccccccccccCCCCcEEEEecCCCCCCCceEEECchHHHHHHHHHHHhc-----CCCCCcEE
Confidence            0112356666543211   1  111123568999999999999999999999999877766544444     77889999


Q ss_pred             EEecChHHHHHHHHHHHHHhcCcEEEEeCC--CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHH
Q 010455          270 FSFLPLAHIYDQIIETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEF  347 (510)
Q Consensus       270 ~~~~pl~h~~g~~~~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~  347 (510)
                      ++..|+.|+.+...++.+|..|+++++.++  ++..+++.++++++|++.++|++++.+.+.                  
T Consensus       401 ~~~~~l~w~~g~~~v~~~L~~Gat~vl~~g~p~~~~~~~~i~~~~vT~l~~~Pt~l~~l~~~------------------  462 (728)
T PLN03052        401 CWPTNLGWMMGPWLVYASLLNGATLALYNGSPLGRGFAKFVQDAKVTMLGTVPSIVKTWKNT------------------  462 (728)
T ss_pred             EECCCcHHHhHHHHHHHHHHhCCEEEEeCCCCCCChHHHHHHHHCCCEEEECHHHHHHHHhc------------------
Confidence            999999999998777889999999999875  557899999999999999999999987641                  


Q ss_pred             HHHhhhhhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcC-CCeeeeccccccccceec
Q 010455          348 AYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG-APLTQGYGLTESCSGCFT  426 (510)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g-~~l~~~yG~tE~~~~~~~  426 (510)
                                         ...+.++++        +||.+++||++++++...++.+.++ ..+.+.||+||+++....
T Consensus       463 -------------------~~~~~~dls--------sLr~i~s~Ge~l~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~  515 (728)
T PLN03052        463 -------------------NCMAGLDWS--------SIRCFGSTGEASSVDDYLWLMSRAGYKPIIEYCGGTELGGGFVT  515 (728)
T ss_pred             -------------------CCcccCChh--------heeEEEecCCCCCHHHHHHHHHhcCCCCeEeeccChhhCccccc
Confidence                               111233444        8999999999999999888888766 579999999999865443


Q ss_pred             ccCCCCccCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecC--CccccccCCchhhhhhhc-----cC--cccc
Q 010455          427 SLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGN--TLFSGYYKRPDLTEEVIV-----DG--WFHT  497 (510)
Q Consensus       427 ~~~~~~~~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~--~v~~gY~~~~~~~~~~~~-----~g--w~~T  497 (510)
                      ........++++|.|.+|++++|+| ++|++++.|..+.|||+++++  +...+|+++.. ...-|.     +|  ||+|
T Consensus       516 ~~~~~~~~~g~~g~p~~g~~v~v~d-~~g~~v~~g~~~~GEL~v~~~~~~~~~~~~~~~~-~~~yf~~~p~~~g~~~~~t  593 (728)
T PLN03052        516 GSLLQPQAFAAFSTPAMGCKLFILD-DSGNPYPDDAPCTGELALFPLMFGASSTLLNADH-YKVYFKGMPVFNGKILRRH  593 (728)
T ss_pred             CCCCCCCCCCccccCCCCceEEEEC-CCCCCCCCCCCceEEEEEeCCCCCCCccccCchh-hhhhhhcCCCCCCCEEEec
Confidence            3222223458899999999999999 899888765324699999865  33456777642 333331     24  8999


Q ss_pred             CCe-eeccCCccC
Q 010455          498 GKN-PWQYTFKKL  509 (510)
Q Consensus       498 GDl-~~d~dG~~~  509 (510)
                      ||+ ++|+||++.
T Consensus       594 GDl~~~d~dG~l~  606 (728)
T PLN03052        594 GDIFERTSGGYYR  606 (728)
T ss_pred             CceEEECCCCeEE
Confidence            999 999999865

>PRK03584 acetoacetyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.2e-49  Score=426.49  Aligned_cols=404  Identities=19%  Similarity=0.199  Sum_probs=306.3

Q ss_pred             CCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHH
Q 010455           43 ESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC  122 (510)
Q Consensus        43 ~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA~  122 (510)
                      .|+.+.+..+  .+|+++|+++.   ++ .+..+.+||+||.++++++|++|++.|+++||+|+++++|++++++++|||
T Consensus        86 ~n~~~~~~~~--~~~~~~Al~~~---~~-~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~v~~~lA~  159 (655)
T PRK03584         86 LNYAENLLRH--RRDDRPAIIFR---GE-DGPRRELSWAELRRQVAALAAALRALGVGPGDRVAAYLPNIPETVVAMLAT  159 (655)
T ss_pred             eeHHHHhhcc--CCCCCeEEEEE---CC-CCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence            3555554432  58999999986   43 344578999999999999999999999999999999999999999999999


Q ss_pred             HhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCCh---------hhHhhcCccCCCCccEEEEecCCChhhhhHhhh
Q 010455          123 NSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI---------PSILSCLPRCCLYLKTIVSFANVSSSQKKEAEE  193 (510)
Q Consensus       123 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  193 (510)
                      +++|++++|+++.++.+++..+++.++++++|+++...         ..+.+.. ..+..+..++.+.......   ...
T Consensus       160 ~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~---~~~  235 (655)
T PRK03584        160 ASLGAIWSSCSPDFGVQGVLDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAELR-AALPSLEHVVVVPYLGPAA---AAA  235 (655)
T ss_pred             HHcCcEEEeeCCCCCHHHHHHHHHHcCCcEEEEccccccCCcccchHHHHHHHH-hcCCCccEEEEEecCCCcc---ccc
Confidence            99999999999999999999999999999999987532         2222221 1223444555554321100   000


Q ss_pred             cCceeeeHHHHHHcC-CCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHH-HhhhhhhhhhccccCCCCcEEEE
Q 010455          194 LGVSCFSWEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAE-VLSVDQMFVVTGKVCSEEDTYFS  271 (510)
Q Consensus       194 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~-~~~~~~~~~~~~~~~~~~d~~~~  271 (510)
                      .......|+++.... ...........+++++|+|||||||.||||+++|.+++.+ +......+     .+.++|++++
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~~~~  310 (655)
T PRK03584        236 ALPGALLWEDFLAPAEAAELEFEPVPFDHPLWILYSSGTTGLPKCIVHGHGGILLEHLKELGLHC-----DLGPGDRFFW  310 (655)
T ss_pred             ccCCcccHHHHhhccccCCCCceecCCCCcEEEEecCCCCCCCceEEECccHHHHHHHHHHHHhc-----CCCCCCEEEE
Confidence            111234466665422 1122233456789999999999999999999999987654 44444444     7788999999


Q ss_pred             ecChHHHHHHHHHHHHHhcCcEEEEeCC-----CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHH
Q 010455          272 FLPLAHIYDQIIETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFE  346 (510)
Q Consensus       272 ~~pl~h~~g~~~~l~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~  346 (510)
                      ..++.|..+. ..+.+|+.|+++++.++     ++..+++.++++++|++.++|+++..+.+.-.               
T Consensus       311 ~~~~~~~~~~-~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~---------------  374 (655)
T PRK03584        311 YTTCGWMMWN-WLVSGLLVGATLVLYDGSPFYPDPNVLWDLAAEEGVTVFGTSAKYLDACEKAGL---------------  374 (655)
T ss_pred             cCCchHHhHH-HHHHHHHcCCEEEEeCCCCCCCCHHHHHHHHHHHCCEEEEcCHHHHHHHHhcCC---------------
Confidence            9999987543 46679999999999753     78999999999999999999999988754100               


Q ss_pred             HHHHhhhhhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhc--CCCeeeeccccccccce
Q 010455          347 FAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS--GAPLTQGYGLTESCSGC  424 (510)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~--g~~l~~~yG~tE~~~~~  424 (510)
                                         .+ ....+++        +||.+++||+++++++.+++.+.+  ++.+.+.||+||++...
T Consensus       375 -------------------~~-~~~~~l~--------sLr~i~~~Ge~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~  426 (655)
T PRK03584        375 -------------------VP-GETHDLS--------ALRTIGSTGSPLPPEGFDWVYEHVKADVWLASISGGTDICSCF  426 (655)
T ss_pred             -------------------Cc-cccCChh--------heEEEEEecCCCCHHHHHHHHHHhCCCceEEeccChHhhhccc
Confidence                               00 1112333        899999999999999999999887  47799999999986544


Q ss_pred             ecccCCCCccCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecC--CccccccCCchhhh--hhh---ccCcccc
Q 010455          425 FTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGN--TLFSGYYKRPDLTE--EVI---VDGWFHT  497 (510)
Q Consensus       425 ~~~~~~~~~~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~--~v~~gY~~~~~~~~--~~~---~~gw~~T  497 (510)
                      ..........++++|.|++|++++|+| ++|.++ .  ++.|||+|+||  +++.|||++++.+.  +.+   .+|||+|
T Consensus       427 ~~~~~~~~~~~g~~g~p~~g~~~~ivd-~~g~~~-~--g~~GeL~v~gp~p~~~~gy~~~~~~~~~~~~~~~~~~g~~~T  502 (655)
T PRK03584        427 VGGNPLLPVYRGEIQCRGLGMAVEAWD-EDGRPV-V--GEVGELVCTKPFPSMPLGFWNDPDGSRYRDAYFDTFPGVWRH  502 (655)
T ss_pred             ccCCCCCCcCCCccCCCcCCceeEEEC-CCCCCC-C--CCceEEEEccCCCCCcceeeCCCccchHHHhhhccCCCEeec
Confidence            333222233448999999999999999 888776 3  48999999996  79999999998543  222   2689999


Q ss_pred             CCe-eeccCCccC
Q 010455          498 GKN-PWQYTFKKL  509 (510)
Q Consensus       498 GDl-~~d~dG~~~  509 (510)
                      ||+ ++|+||++.
T Consensus       503 GDl~~~d~dG~l~  515 (655)
T PRK03584        503 GDWIEITEHGGVV  515 (655)
T ss_pred             CCeEEECCCCeEE
Confidence            999 999999864

>PRK12583 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=2e-49  Score=418.21  Aligned_cols=400  Identities=24%  Similarity=0.381  Sum_probs=318.4

Q ss_pred             CCCCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHH
Q 010455           40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM  119 (510)
Q Consensus        40 ~~~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~  119 (510)
                      ....++.++|++.++++|+++|+++.   +..    +.+||.||.++++++|.+|.+.|+++|++|+++++|++++++++
T Consensus        15 ~~~~~l~~~l~~~~~~~p~~~a~~~~---~~~----~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~   87 (558)
T PRK12583         15 LLTQTIGDAFDATVARFPDREALVVR---HQA----LRYTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQ   87 (558)
T ss_pred             cccCcHHHHHHHHHHHCCCCeEEEec---CCC----cEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHH
Confidence            34468999999999999999999875   432    57999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChh-----hHhhcCc------------cCCCCccEEEEecC
Q 010455          120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP-----SILSCLP------------RCCLYLKTIVSFAN  182 (510)
Q Consensus       120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-----~~~~~~~------------~~~~~~~~v~~~~~  182 (510)
                      |||+++|++++++++..+.+++..+++.++++++|+++....     .+.+...            ...+.+..++....
T Consensus        88 ~a~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (558)
T PRK12583         88 FATARIGAILVNINPAYRASELEYALGQSGVRWVICADAFKTSDYHAMLQELLPGLAEGQPGALACERLPELRGVVSLAP  167 (558)
T ss_pred             HHHHhhCCEEEecCCCCCHHHHHHHHHhcCCcEEEEeccccccchhHHHHHHhhhhccccccccccccCCcceEEEEecC
Confidence            999999999999999999999999999999999999865321     1111111            01122233333322


Q ss_pred             CChhhhhHhhhcCceeeeHHHHHHcCCC------CCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhh
Q 010455          183 VSSSQKKEAEELGVSCFSWEEFLQLGTL------DCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMF  256 (510)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~  256 (510)
                      ...          .....++++......      ........++++++++|||||||.||+|.++|+++.+++......+
T Consensus       168 ~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~PK~v~~s~~~l~~~~~~~~~~~  237 (558)
T PRK12583        168 APP----------PGFLAWHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESL  237 (558)
T ss_pred             CCC----------ccccchHhhhhcccccccccccccccccCCCCcEEEEECCCCCCCCceEEeeHHHHHHHHHHHHHHh
Confidence            211          012233333322210      0111233578899999999999999999999999998888877666


Q ss_pred             hhccccCCCCcEEEEecChHHHHHHHH-HHHHHhcCcEEEEeCC--CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHH
Q 010455          257 VVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNK  333 (510)
Q Consensus       257 ~~~~~~~~~~d~~~~~~pl~h~~g~~~-~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~  333 (510)
                           ++..+|++++.+|++|.+|... .+.++..|+++++...  ++..+++.++++++|+++++|+++..++....  
T Consensus       238 -----~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~v~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~--  310 (558)
T PRK12583        238 -----GLTEHDRLCVPVPLYHCFGMVLANLGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMFIAELDHPQ--  310 (558)
T ss_pred             -----CCCCCCeEEEecCchhhhhHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHcccc--
Confidence                 7888999999999999999875 7778999999987643  89999999999999999999999877653110  


Q ss_pred             hhccChhHHHHHHHHHHhhhhhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcC-CCee
Q 010455          334 ISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG-APLT  412 (510)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g-~~l~  412 (510)
                                                         .+..+++        ++|.+++||+++++++.+++.+.++ ..++
T Consensus       311 -----------------------------------~~~~~~~--------~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~  347 (558)
T PRK12583        311 -----------------------------------RGNFDLS--------SLRTGIMAGAPCPIEVMRRVMDEMHMAEVQ  347 (558)
T ss_pred             -----------------------------------ccCCCch--------hheEEEecCCCCCHHHHHHHHHHcCCccee
Confidence                                               0111222        8999999999999999999988876 4699


Q ss_pred             eeccccccccceecccCCC--CccCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhh
Q 010455          413 QGYGLTESCSGCFTSLADV--FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI  490 (510)
Q Consensus       413 ~~yG~tE~~~~~~~~~~~~--~~~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~  490 (510)
                      +.||+||++.+++......  .....++|+|++++.++|+| +++.+++.+  +.|||+++|+.++.||+++++.+.+.|
T Consensus       348 ~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d-~~~~~~~~g--~~Gel~v~g~~~~~gy~~~~~~~~~~~  424 (558)
T PRK12583        348 IAYGMTETSPVSLQTTAADDLERRVETVGRTQPHLEVKVVD-PDGATVPRG--EIGELCTRGYSVMKGYWNNPEATAESI  424 (558)
T ss_pred             ccccccccccceeccCcccccccccCCCCccCCCCeEEEEC-CCCCCCCCC--CeeEEEEEeCccchhhcCChHHHHhhc
Confidence            9999999998766543321  22347899999999999999 777766665  899999999999999999999998888


Q ss_pred             -ccCccccCCe-eeccCCccC
Q 010455          491 -VDGWFHTGKN-PWQYTFKKL  509 (510)
Q Consensus       491 -~~gw~~TGDl-~~d~dG~~~  509 (510)
                       .+|||+|||+ ++|+||++.
T Consensus       425 ~~~~~~~TGDl~~~~~dg~l~  445 (558)
T PRK12583        425 DEDGWMHTGDLATMDEQGYVR  445 (558)
T ss_pred             CCCCCeeccceEEECCCccEE
Confidence             8999999999 999999865

>TIGR03205 pimA dicarboxylate--CoA ligase PimA

Probab=100.00  E-value=2.9e-49  Score=414.98  Aligned_cols=426  Identities=22%  Similarity=0.320  Sum_probs=320.7

Q ss_pred             CCCCCccccccccCCCCCCCCCCCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCC
Q 010455           20 PSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGV   99 (510)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv   99 (510)
                      |++..--++.+|+.     +..+.++.++|+++++.+|+++|+.+.   +      +.+||.||.++++++|.+|.+.|+
T Consensus         3 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~p~~~a~~~~---~------~~~ty~el~~~~~~~a~~L~~~gi   68 (541)
T TIGR03205         3 PGEQFYPEGVRWDA-----TIARGTLPDLLSKAAADYGPRPALEFR---D------RPITYTELEAMAETAAAALLRAGY   68 (541)
T ss_pred             ccccccCCCCCccc-----CCCCCCHHHHHHHHHHHcCCCceEEEC---C------cEeeHHHHHHHHHHHHHHHHHcCC
Confidence            45554333366652     224568999999999999999998764   3      579999999999999999999999


Q ss_pred             CCCCEEEEEcCCchhHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCC--hhhHhhcCccCCCCccEE
Q 010455          100 NPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENK--IPSILSCLPRCCLYLKTI  177 (510)
Q Consensus       100 ~~gd~Vai~~~ns~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~--~~~~~~~~~~~~~~~~~v  177 (510)
                      .+|++|+++++|+++++++++||+++|++++|++|..+.+++.++++.++++.+|+++..  ...+.+....  ..+..+
T Consensus        69 ~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~vi~~~~~~~~~~~~~~~~~--~~~~~~  146 (541)
T TIGR03205        69 GKDASVALYLGNTPDHPINFFGALKAGARVVHLSPLDGERALSHKLSDSGARLLITSDLAALLPMALKFLEK--GLLDRL  146 (541)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHhcCeEEEecCCCCCHHHHHHHHhhcCceEEEEeCchhhhHHHHHhhhc--ccceEE
Confidence            999999999999999999999999999999999999999999999999999999998632  1112121111  112333


Q ss_pred             EEecCCChhhhhH---hhhcCceeeeHHHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhh
Q 010455          178 VSFANVSSSQKKE---AEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQ  254 (510)
Q Consensus       178 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~  254 (510)
                      ++...........   ..........++++..............++++++++|||||||.||+|.++|+++....... .
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~-~  225 (541)
T TIGR03205       147 IVCEDDNWGKVGTPQAPIPADPRIVTYADFVKGAAAPAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIY-D  225 (541)
T ss_pred             EEecccccccccccccccCCCcccccHHHHHhcCCCCCCCCCCCccCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHH-H
Confidence            3333211000000   00001123445555543322222234567899999999999999999999999987654422 1


Q ss_pred             hhhh-ccccCCCCcEEEEecChHHHHHHHH-HHHHHhcCcEEEEeCC-CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHH
Q 010455          255 MFVV-TGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGIS  331 (510)
Q Consensus       255 ~~~~-~~~~~~~~d~~~~~~pl~h~~g~~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~  331 (510)
                      .+.. ........+++++.+|++|.+++.. ++.++..|+++++... ++..+++.++++++|++.++|+++..+++.  
T Consensus       226 ~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~--  303 (541)
T TIGR03205       226 VWGKPSRATRGDVERVICVLPLFHIYALTVILLRSLRRGDLISLHQRFDVAAVFRDIEEKRATVFPGVPTMWIALAND--  303 (541)
T ss_pred             hhcccccccCCCCceEEEeccHHHHHHHHHHHHHHHhcCCEEEecCCCCHHHHHHHHHHcCCeEeechHHHHHHHHhC--
Confidence            1100 0012234579999999999998875 6678999999888765 999999999999999999999999887641  


Q ss_pred             HHhhccChhHHHHHHHHHHhhhhhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCe
Q 010455          332 NKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPL  411 (510)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l  411 (510)
                                                         +.....++        +++|.+++||+++++++.+++.+.++..+
T Consensus       304 -----------------------------------~~~~~~~~--------~~l~~i~~gg~~~~~~~~~~~~~~~~~~~  340 (541)
T TIGR03205       304 -----------------------------------PSLEKRDL--------SSLATIGSGGAPLPVEVANFFERKTGLKL  340 (541)
T ss_pred             -----------------------------------ccccccCc--------cccceEEEccccCCHHHHHHHHHHhCCCe
Confidence                                               11111122        27999999999999999999988889999


Q ss_pred             eeeccccccccceecccCCCCccCCccccccCCeEEEEeec-CCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhh
Q 010455          412 TQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESV-PEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI  490 (510)
Q Consensus       412 ~~~yG~tE~~~~~~~~~~~~~~~~~svG~p~~g~~i~ivd~-~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~  490 (510)
                      ++.||+||++..++.........++++|+|++++.++|++. +++..++.+  +.|||+++|++++.||+++++.+.+.|
T Consensus       341 ~~~YG~TE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~d~~~~~~~~g--~~Gel~v~~~~~~~gy~~~~~~~~~~~  418 (541)
T TIGR03205       341 KSGWGMTETCSPGTGHPPEGPDKPGSIGLMLPGIELDVVSLDDPTKVLPPG--EVGELRIRGPNVTRGYWNRPEESAEAF  418 (541)
T ss_pred             ecccccccCCcccccCCCCCCCCCCCcceeccCceeEEEecCCCCccCCCC--CeeEEEEecCCccccccCChhhhHhhh
Confidence            99999999987766544333334478999999999988642 455555544  899999999999999999999999999


Q ss_pred             ccCccccCCe-eeccCCccC
Q 010455          491 VDGWFHTGKN-PWQYTFKKL  509 (510)
Q Consensus       491 ~~gw~~TGDl-~~d~dG~~~  509 (510)
                      .++||+|||+ ++++||++.
T Consensus       419 ~~~~~~TGD~~~~~~~g~l~  438 (541)
T TIGR03205       419 VGDRFLTGDIGYMDTDGYFF  438 (541)
T ss_pred             ccCCcccCceEEEcCCceEE
Confidence            8899999999 999999764

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=100.00  E-value=3.8e-50  Score=464.02  Aligned_cols=404  Identities=16%  Similarity=0.096  Sum_probs=309.8

Q ss_pred             CCCHHHHHHHHHhhCCCCcceeeeeccCCC---CCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHH
Q 010455           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGK---VGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIA  118 (510)
Q Consensus        42 ~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~---~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~  118 (510)
                      ..++.++|+++++++|+++|+++.   ...   ....+.+||+||.++++++|++|++.|+++|++|+++++|+++++++
T Consensus       235 ~~~l~~~~~~~a~~~pd~~A~~~~---~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~~~~~i~~  311 (1389)
T TIGR03443       235 RGAIHDIFADNAEKHPDRTCVVET---PSFLDPSSKTRSFTYKQINEASNILAHYLLKTGIKRGDVVMIYAYRGVDLVVA  311 (1389)
T ss_pred             cCcHHHHHHHHHHhCCCCeEEEec---cccccccCCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEecCCHHHHHH
Confidence            368999999999999999999864   211   12236899999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCCh---hhHhhcCccCC---CCccEEEEecCCChhhhhHhh
Q 010455          119 MEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI---PSILSCLPRCC---LYLKTIVSFANVSSSQKKEAE  192 (510)
Q Consensus       119 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~  192 (510)
                      +|||+++|++++|++|..+.+++..+++.++++++|++....   ..+........   ..+..+. +.+.....     
T Consensus       312 ~lA~l~~G~~~vpldp~~p~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----  385 (1389)
T TIGR03443       312 VMGVLKAGATFSVIDPAYPPARQTIYLSVAKPRALIVIEKAGTLDQLVRDYIDKELELRTEIPALA-LQDDGSLV-----  385 (1389)
T ss_pred             HHHHHhhCcEEeccCCCCcHHHHHHHHHhcCCCEEEEeccccccchhhhhhhhcccccccccceEE-eccccccc-----
Confidence            999999999999999999999999999999999999876421   11111111000   0111111 11100000     


Q ss_pred             hcCceeeeHHHHHHcC---CCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEE
Q 010455          193 ELGVSCFSWEEFLQLG---TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTY  269 (510)
Q Consensus       193 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~  269 (510)
                      .... .....+.....   ..........++++++++|||||||.||||+++|+++.+.+.++...+     ++..+|++
T Consensus       386 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~  459 (1389)
T TIGR03443       386 GGSL-EGGETDVLAPYQALKDTPTGVVVGPDSNPTLSFTSGSEGIPKGVLGRHFSLAYYFPWMAKRF-----GLSENDKF  459 (1389)
T ss_pred             cccc-ccccccccccccccccCCCCCcCCCCCceEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhc-----CCCCCCEE
Confidence            0000 00000010000   001111234578999999999999999999999999999998887777     78899999


Q ss_pred             EEecChHHHHHHHHHHHHHhcCcEEEEeCC----CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHH
Q 010455          270 FSFLPLAHIYDQIIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLF  345 (510)
Q Consensus       270 ~~~~pl~h~~g~~~~l~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~  345 (510)
                      +...|++|..++..++.+|+.|+++++.+.    ++..+++.++++++|+++++|++++.+.....              
T Consensus       460 ~~~~~~~~d~~~~~i~~~L~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~--------------  525 (1389)
T TIGR03443       460 TMLSGIAHDPIQRDMFTPLFLGAQLLVPTADDIGTPGRLAEWMAKYGATVTHLTPAMGQLLSAQAT--------------  525 (1389)
T ss_pred             EEecCceecchHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHhCCeEEEeCHHHHHHHHhccc--------------
Confidence            999999999888888999999999998763    68899999999999999999999988753100              


Q ss_pred             HHHHHhhhhhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhc-CCCeeeeccccccccce
Q 010455          346 EFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESCSGC  424 (510)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~-g~~l~~~yG~tE~~~~~  424 (510)
                                                ..+        .+||.+++||++++....+.+.... ++.+++.||+||++..+
T Consensus       526 --------------------------~~~--------~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~  571 (1389)
T TIGR03443       526 --------------------------TPI--------PSLHHAFFVGDILTKRDCLRLQTLAENVCIVNMYGTTETQRAV  571 (1389)
T ss_pred             --------------------------ccC--------CCccEEEEecccCCHHHHHHHHHhCCCCEEEECccCCccceeE
Confidence                                      001        2899999999999999988887765 78899999999998766


Q ss_pred             ecccCCC----------CccCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhh-c--
Q 010455          425 FTSLADV----------FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-V--  491 (510)
Q Consensus       425 ~~~~~~~----------~~~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~--  491 (510)
                      +......          .....++|+|+++++++|+| +++...++..|+.|||+|+||+++.||+|+|+.|.++| .  
T Consensus       572 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd-~~~~~~~~~~G~~GEL~i~G~~v~~GY~~~p~~t~~~f~~~~  650 (1389)
T TIGR03443       572 SYFEIPSRSSDSTFLKNLKDVMPAGKGMKNVQLLVVN-RNDRTQTCGVGEVGEIYVRAGGLAEGYLGLPELNAEKFVNNW  650 (1389)
T ss_pred             EEEEccccccccchhhcccCcCcCCCccCCCEEEEEC-CccCCCcCCCCCceEEEecccccchhcCCChhHhhhhccCCc
Confidence            5432211          11235789999999999999 65533334445999999999999999999999999888 2  


Q ss_pred             --------------------------cCccccCCe-eeccCCccC
Q 010455          492 --------------------------DGWFHTGKN-PWQYTFKKL  509 (510)
Q Consensus       492 --------------------------~gw~~TGDl-~~d~dG~~~  509 (510)
                                                +|||+|||+ ++|+||.+.
T Consensus       651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~TGDlg~~~~dG~l~  695 (1389)
T TIGR03443       651 FVDPSHWIDLDKENNKPEREFWLGPRDRLYRTGDLGRYLPDGNVE  695 (1389)
T ss_pred             ccCcccccccccccccccccccCCCccceeecCCceeEcCCCCEE
Confidence                                      579999999 999999864

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>TIGR02262 benz_CoA_lig benzoate-CoA ligase family

Probab=100.00  E-value=3.9e-49  Score=411.09  Aligned_cols=392  Identities=20%  Similarity=0.243  Sum_probs=317.5

Q ss_pred             CCHHHHHHHH-HhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHH
Q 010455           43 ESPWQFFCDS-AKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (510)
Q Consensus        43 ~sl~~~l~~~-a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA  121 (510)
                      +...++|+++ ++.+||++|++..   +      ..+||.||.++++++|++|.+.|+++|++|+++++|+++++++++|
T Consensus         4 ~~~~~~~~~~~~~~~p~~~a~~~~---~------~~~ty~~l~~~~~~~a~~L~~~g~~~g~~v~l~~~~~~~~~~~~~a   74 (508)
T TIGR02262         4 NAAEDLLDRNVVEGRGGKTAFIDD---I------SSLSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLG   74 (508)
T ss_pred             hHHHHHHHHHHhcccCCceEEEeC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence            4567778777 6679999998754   3      5799999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCceeeeH
Q 010455          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW  201 (510)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  201 (510)
                      |+++|++++|+++..+.+++.++++.++++++|++......+.+.... ......++..+....           ....+
T Consensus        75 ~~~~G~~~v~l~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----------~~~~~  142 (508)
T TIGR02262        75 AIRAGIVPVALNTLLTADDYAYMLEDSRARVVFVSGELLPVIKAALGK-SPHLEHRVVVGRPEA-----------GEVQL  142 (508)
T ss_pred             HHHcCcEEeeccCCCCHHHHHHHHHhcCCeEEEEchhhHHHHHHHHhc-CCCccEEEEeCCCCc-----------ccccH
Confidence            999999999999999999999999999999999998776655443221 233444444433211           12234


Q ss_pred             HHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhh-hhhhhhhccccCCCCcEEEEecChHHHHH
Q 010455          202 EEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLS-VDQMFVVTGKVCSEEDTYFSFLPLAHIYD  280 (510)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~-~~~~~~~~~~~~~~~d~~~~~~pl~h~~g  280 (510)
                      .++..............++++++++|||||||.||+|.++|+++...+.. ....+     ++..+|+++..+|++|..+
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~  217 (508)
T TIGR02262       143 AELLATESEQFKPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTL-----GIREDDVVFSAAKLFFAYG  217 (508)
T ss_pred             HHHhhcCCCccCCCCCCCCCcEEEEeCCCCCCCCcEEEEechhHHHHHHHHhHHhc-----CCCCCCEEEEcCchHHHHH
Confidence            44443322222223445789999999999999999999999999887765 23333     6788999999999999999


Q ss_pred             HHH-HHHHHhcCcEEEEeCC--CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhcc
Q 010455          281 QII-ETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMK  357 (510)
Q Consensus       281 ~~~-~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (510)
                      +.. ++.++..|+++++.+.  ++..+++.++++++|++.++|.++..++...                           
T Consensus       218 ~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~~~~~~---------------------------  270 (508)
T TIGR02262       218 LGNALTFPMSVGATTVLMGERPTPDAVFDRLRRHQPTIFYGVPTLYAAMLADP---------------------------  270 (508)
T ss_pred             HHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHCCcEEecchHHHHHHhcCc---------------------------
Confidence            864 6678999999988764  7999999999999999999999888765310                           


Q ss_pred             cCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeeccccccccceecccCCCCccCCc
Q 010455          358 KGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGT  437 (510)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~~~~~~~~~~~~~~s  437 (510)
                                ..+....        .++|.+++||+++++++.+.|.+.+|+++++.||+||++.+.+........ .++
T Consensus       271 ----------~~~~~~~--------~~l~~~~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~-~~~  331 (508)
T TIGR02262       271 ----------NLPAEDQ--------VRLRLCTSAGEALPAEVGQRWQARFGVDIVDGIGSTEMLHIFLSNLPGDVR-YGT  331 (508)
T ss_pred             ----------ccccccc--------ccceeEEEcCCCCCHHHHHHHHHHhCCchhhCccccccCceeecCCccCCC-CCC
Confidence                      0000111        389999999999999999999998999999999999998766544333222 378


Q ss_pred             cccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhhccCccccCCe-eeccCCccC
Q 010455          438 VGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGKN-PWQYTFKKL  509 (510)
Q Consensus       438 vG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDl-~~d~dG~~~  509 (510)
                      +|+|++|++++|+| +++.+++.+  +.|||+++|+.++.||+++++.+.+.|.+|||+|||+ ++++||++.
T Consensus       332 ~G~~~~g~~v~i~d-~~~~~~~~g--~~Gel~i~~~~~~~gY~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~  401 (508)
T TIGR02262       332 SGKPVPGYRLRLVG-DGGQDVAAG--EPGELLISGPSSATMYWNNRAKTRDTFQGEWTRSGDKYVRNDDGSYT  401 (508)
T ss_pred             cCCCCCCcEEEEEC-CCCCCCCCC--CeeEEEEecCccccccCCCHHHhHhhhhcCceeccceEEEcCCccEE
Confidence            99999999999999 888777766  8999999999999999999999999898999999999 999998754

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.

>PRK06164 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.2e-49  Score=414.85  Aligned_cols=401  Identities=18%  Similarity=0.208  Sum_probs=312.5

Q ss_pred             CCCCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHH
Q 010455           40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM  119 (510)
Q Consensus        40 ~~~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~  119 (510)
                      ....++.++|.++++.+|+++|++..   +      +.+||+||.+++.++|++|.+.|+++||+|+++++|+.++++++
T Consensus         7 ~~~~~l~~~l~~~a~~~p~~~a~~~~---~------~~~Ty~~L~~~~~~~a~~L~~~g~~~g~~V~i~~~n~~~~~~~~   77 (540)
T PRK06164          7 PRADTLASLLDAHARARPDAVALIDE---D------RPLSRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLF   77 (540)
T ss_pred             cCCCCHHHHHHHHHHhCCCCeEEecC---C------CcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcHHHHHHH
Confidence            34568999999999999999999843   2      57999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCCh-----hhHhhcCccCCCCccEEEEecCCChhhhhHhhhc
Q 010455          120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI-----PSILSCLPRCCLYLKTIVSFANVSSSQKKEAEEL  194 (510)
Q Consensus       120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  194 (510)
                      +||+++|++++|+++..+.+++.++++.++++++|++++..     ..+...........+.++.+++......      
T Consensus        78 la~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  151 (540)
T PRK06164         78 LACARLGATVIAVNTRYRSHEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDALPPLRAIAVVDDAADATP------  151 (540)
T ss_pred             HHHHHhCcEEEecCCCCCcHHHHHHHHhcCccEEEEccccccccHHHHhhcccccccCCcceEEEeccCcccCC------
Confidence            99999999999999999999999999999999999987642     1122222222233445555442111000      


Q ss_pred             CceeeeHHHHHHcCC-CCC---CCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEE
Q 010455          195 GVSCFSWEEFLQLGT-LDC---ELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYF  270 (510)
Q Consensus       195 ~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~  270 (510)
                      ......+.++..... ...   ......++++++++|||||||.||+|.++|+++...+..+...+     ++..+|+++
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~l  226 (540)
T PRK06164        152 APAPGARVQLFALPDPAPPAAAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAY-----GYDPGAVLL  226 (540)
T ss_pred             CCCcccccccccccccCCcccccccCCCCCceEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhc-----CCCCCCEEE
Confidence            000000111111110 000   01223468899999999999999999999999999988887777     778999999


Q ss_pred             EecChHHHHHHHHHHHHHhcCcEEEEeCC-CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHH
Q 010455          271 SFLPLAHIYDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAY  349 (510)
Q Consensus       271 ~~~pl~h~~g~~~~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  349 (510)
                      +.+|++|.+|+..++.++..|+++++.+. ++..+++.++++++|+++++|.++..+++..                   
T Consensus       227 ~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~l~~l~~~~-------------------  287 (540)
T PRK06164        227 AALPFCGVFGFSTLLGALAGGAPLVCEPVFDAARTARALRRHRVTHTFGNDEMLRRILDTA-------------------  287 (540)
T ss_pred             EcCCchhHHHHHHHHHHHhcCceEEecCCCCHHHHHHHHHHhCCeeecCCHHHHHHHHHhh-------------------
Confidence            99999999999888899999999998775 8999999999999999999999999987530                   


Q ss_pred             HhhhhhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEec-CCCCHHHHHHHHHhcCCCeeeeccccccccceeccc
Q 010455          350 NYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGA-APLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSL  428 (510)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg-~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~~~~~~  428 (510)
                                         ....++        .++|.+.++| .+...++.+++... |+++++.||+||++.+++...
T Consensus       288 -------------------~~~~~~--------~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~  339 (540)
T PRK06164        288 -------------------GERADF--------PSARLFGFASFAPALGELAALARAR-GVPLTGLYGSSEVQALVALQP  339 (540)
T ss_pred             -------------------cccCCC--------cceeeeeeccCCcchHHHHHHHhhc-CCceecceeeccccceeeccC
Confidence                               001112        2778776665 55666777777766 899999999999987765544


Q ss_pred             CCC--CccCCcccccc-CCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhh-ccCccccCCe-eec
Q 010455          429 ADV--FNMIGTVGVPM-TTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGKN-PWQ  503 (510)
Q Consensus       429 ~~~--~~~~~svG~p~-~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~gw~~TGDl-~~d  503 (510)
                      ...  .....++|.|+ +++.++|+|.+++++++.|  +.|||+|+|++++.||+++++.+.+.| .+|||+|||+ ++|
T Consensus       340 ~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~g--~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~  417 (540)
T PRK06164        340 ATDPVSVRIEGGGRPASPEARVRARDPQDGALLPDG--ESGEIEIRAPSLMRGYLDNPDATARALTDDGYFRTGDLGYTR  417 (540)
T ss_pred             CCCCCcceeccCccccCCCeEEEEecCCCCcCCCCC--CeeEEEEecccccccccCCchhhhhcccCCCceecCCeEEEc
Confidence            322  12224678875 8999999994556555554  899999999999999999999999998 7899999999 999


Q ss_pred             cCCccC
Q 010455          504 YTFKKL  509 (510)
Q Consensus       504 ~dG~~~  509 (510)
                      +||++.
T Consensus       418 ~~g~l~  423 (540)
T PRK06164        418 GDGQFV  423 (540)
T ss_pred             CCceEE
Confidence            999754

>PRK06178 acyl-CoA synthetase; Validated

Probab=100.00  E-value=6.4e-49  Score=414.75  Aligned_cols=410  Identities=21%  Similarity=0.286  Sum_probs=314.4

Q ss_pred             CCCCCCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHH
Q 010455           38 SPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWII  117 (510)
Q Consensus        38 ~~~~~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~  117 (510)
                      .+....++.++|+++++.+|+++|+.+.   +      +.+||.||.++++++|.+|.+.|+++|++|+++++|++++++
T Consensus        28 ~~~~~~~l~~~l~~~a~~~p~~~al~~~---~------~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~   98 (567)
T PRK06178         28 YPHGERPLTEYLRAWARERPQRPAIIFY---G------HVITYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHI   98 (567)
T ss_pred             CCcCcccHHHHHHHHHHHCCCceEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCcHHHH
Confidence            3345578999999999999999999865   4      479999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhh-hHhh----
Q 010455          118 AMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQK-KEAE----  192 (510)
Q Consensus       118 ~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~----  192 (510)
                      +++||+++|++++|++|..+..++.++++.++++++++++...+.+.+.....  .+..++.......... ....    
T Consensus        99 ~~lA~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~ii~~~~~~~~l~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~  176 (567)
T PRK06178         99 VFFGILKLGAVHVPVSPLFREHELSYELNDAGAEVLLALDQLAPVVEQVRAET--SLRHVIVTSLADVLPAEPTLPLPDS  176 (567)
T ss_pred             HHHHHHHhCeEEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHhhccC--CcceEEEeccccccccccccccccc
Confidence            99999999999999999999999999999999999999998777665543322  2333333221110000 0000    


Q ss_pred             -----hcCceeeeHHHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCc
Q 010455          193 -----ELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEED  267 (510)
Q Consensus       193 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d  267 (510)
                           .....+..+.+...............++++++++|||||||.||+|.+||+++...........    ......|
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~----~~~~~~d  252 (567)
T PRK06178        177 LRAPRLAAAGAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVA----VVGGEDS  252 (567)
T ss_pred             cccccccccccccHHHHhhccccccccCCCCCCCeEEEEeCCCCCCCCceEEeccHHHHHHHHHHHHHh----ccCCCCc
Confidence                 0000111111111111111122335678999999999999999999999999988766543321    2577899


Q ss_pred             EEEEecChHHHHHHH-HHHHHHhcCcEEEEeCC-CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHH
Q 010455          268 TYFSFLPLAHIYDQI-IETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLF  345 (510)
Q Consensus       268 ~~~~~~pl~h~~g~~-~~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~  345 (510)
                      ++++.+|++|.+|+. .++.+++.|+++++.+. ++..++..++++++|.+.++|..+..+++.                
T Consensus       253 ~~l~~~p~~~~~g~~~~~~~~l~~G~~~~l~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~l~~~----------------  316 (567)
T PRK06178        253 VFLSFLPEFWIAGENFGLLFPLFSGATLVLLARWDAVAFMAAVERYRVTRTVMLVDNAVELMDH----------------  316 (567)
T ss_pred             EEEEecchHHHHHHHHHHHHHHHcCceEEEeCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhC----------------
Confidence            999999999999986 47778999999999875 899999999999999999999998887641                


Q ss_pred             HHHHHhhhhhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEE--EecCCCCHHHHHHHHHhcCCCeee-ecccccccc
Q 010455          346 EFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAML--SGAAPLPIHVEEFLRVTSGAPLTQ-GYGLTESCS  422 (510)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~--~gg~~~~~~~~~~~~~~~g~~l~~-~yG~tE~~~  422 (510)
                                           +.....+++        +++.+.  +.++.+++++.+.++..+|..++. .||+||++.
T Consensus       317 ---------------------~~~~~~~l~--------~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~YG~tE~~~  367 (567)
T PRK06178        317 ---------------------PRFAEYDLS--------SLRQVRVVSFVKKLNPDYRQRWRALTGSVLAEAAWGMTETHT  367 (567)
T ss_pred             ---------------------CCCCCCCcc--------hheeeeeccccccCCHHHHHHHHHHhCCcccccccccccccc
Confidence                                 001111222        555544  445899999999999988877765 799999986


Q ss_pred             ceecccCC--C----CccCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhhccCccc
Q 010455          423 GCFTSLAD--V----FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFH  496 (510)
Q Consensus       423 ~~~~~~~~--~----~~~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~gw~~  496 (510)
                      .+......  .    ...++++|+|+||++++|+|.++++.++.+  +.|||+|+|++++.||+++++.+.+.|.+|||+
T Consensus       368 ~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~v~d~~~~~~~~~g--~~Gel~v~g~~v~~gY~~~~~~~~~~~~dg~~~  445 (567)
T PRK06178        368 CDTFTAGFQDDDFDLLSQPVFVGLPVPGTEFKICDFETGELLPLG--AEGEIVVRTPSLLKGYWNKPEATAEALRDGWLH  445 (567)
T ss_pred             cceeccccccCccccccCCcccccccCCcEEEEEcCCCCCcCCCC--CceEEEEECCcccccccCChhhhhhcccCCcee
Confidence            55433211  1    123467999999999999995556666655  899999999999999999999998888899999


Q ss_pred             cCCe-eeccCCccC
Q 010455          497 TGKN-PWQYTFKKL  509 (510)
Q Consensus       497 TGDl-~~d~dG~~~  509 (510)
                      |||+ ++++||++.
T Consensus       446 TGDl~~~~~~g~l~  459 (567)
T PRK06178        446 TGDIGKIDEQGFLH  459 (567)
T ss_pred             ecceEEEecCCeEE
Confidence            9999 999999754

>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase

Probab=100.00  E-value=4.5e-49  Score=420.36  Aligned_cols=405  Identities=17%  Similarity=0.155  Sum_probs=300.7

Q ss_pred             CCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHH
Q 010455           43 ESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC  122 (510)
Q Consensus        43 ~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA~  122 (510)
                      .|+.+.+..   +.++++|+++.   ++ .+..+.+||+||.+++.++|.+|+++|+++||+|+++++|++++++++|||
T Consensus        87 ~n~~~~~~~---~~~~~~a~~~~---~~-~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~~n~~e~~~~~lA~  159 (652)
T TIGR01217        87 LNYAENLLR---AAGTEPALLYV---DE-THEPAPVTWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAVVAMLAT  159 (652)
T ss_pred             eeHHHHHhc---cCCCCeEEEEE---CC-CCCeeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence            445554443   35789999886   43 344578999999999999999999999999999999999999999999999


Q ss_pred             HhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCC---------hhhHhhcCccCCCCccEEEEecCCChhhhhHhhh
Q 010455          123 NSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENK---------IPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEE  193 (510)
Q Consensus       123 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  193 (510)
                      +++|++++|+++.++.+++..++++++++++|+++..         .+.+.++.. ..+.++.++.+......... . .
T Consensus       160 ~~~Gav~vp~~~~~~~~~l~~~l~~~~~k~li~~~~~~~~~k~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~-~-~  236 (652)
T TIGR01217       160 ASVGAIWSSCSPDFGARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRK-ELPTLRAVVHIPYLGPRETE-A-P  236 (652)
T ss_pred             HHhCeEEEecCCCCCHHHHHHHHHhcCCcEEEEccccccCCcccchHHHHHHHHh-cCCCccEEEEEeCCCCcccc-c-c
Confidence            9999999999999999999999999999999998753         223322222 22445556555422110000 0 0


Q ss_pred             cCceeeeHHHHHHcC-CCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHH-HhhhhhhhhhccccCCCCcEEEE
Q 010455          194 LGVSCFSWEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAE-VLSVDQMFVVTGKVCSEEDTYFS  271 (510)
Q Consensus       194 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~-~~~~~~~~~~~~~~~~~~d~~~~  271 (510)
                      .......++++.... ...........+++++|+|||||||.||||+++|.+++.. .......+     ++.++|++++
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~~~~  311 (652)
T TIGR01217       237 KIDGALDLEDFTAAAQAAELVFEQLPFDHPLWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGLHC-----DLGPGDRLFY  311 (652)
T ss_pred             cccCcccHHHHHhcccCCCCCceecCCCCCEEEEEcCCCCCCCCeEEecccHHHHHHHHHHHhcc-----CCCCCcEEEE
Confidence            001123466665432 1111223345689999999999999999999999987643 33333334     7788999999


Q ss_pred             ecChHHHHHHHHHHHHHhcCcEEEEeCC-----CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHH
Q 010455          272 FLPLAHIYDQIIETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFE  346 (510)
Q Consensus       272 ~~pl~h~~g~~~~l~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~  346 (510)
                      ..|+.|..+ ..++.+|+.|+++++.++     ++..+++.++++++|++..+|.++..+.+.                 
T Consensus       312 ~~~~~~~~~-~~~~~~l~~G~t~vl~~g~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~-----------------  373 (652)
T TIGR01217       312 YTTTGWMMW-NWLVSGLATGATLVLYDGSPGFPATNVLWDIAERTGATLFGTSAKYVMACRKA-----------------  373 (652)
T ss_pred             eCCcchhhh-HHHHHHHhcCcEEEEECCCCCCCCchHHHHHHHHhCCeEEecCHHHHHHHHhc-----------------
Confidence            999999754 335579999999999853     678999999999999987777776655320                 


Q ss_pred             HHHHhhhhhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcC--CCeeeeccccccccce
Q 010455          347 FAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG--APLTQGYGLTESCSGC  424 (510)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g--~~l~~~yG~tE~~~~~  424 (510)
                                      .  .......+++        +||.+++||+++++++.+++.+.++  ..+.+.||+||++...
T Consensus       374 ----------------~--~~~~~~~~l~--------sLr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~  427 (652)
T TIGR01217       374 ----------------G--VHPARTHDLS--------ALQCVASTGSPLPPDGFRWVYDEIKADVWLASISGGTDICSCF  427 (652)
T ss_pred             ----------------C--CCccccCChh--------heeEEEeecCCCCHHHHHHHHHHhCCCceEEeccCHHHHhccc
Confidence                            0  0001223343        8999999999999999999988875  4577899999975433


Q ss_pred             ecccCCCCccCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecC--CccccccCCchhhh--hh-h--ccCcccc
Q 010455          425 FTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGN--TLFSGYYKRPDLTE--EV-I--VDGWFHT  497 (510)
Q Consensus       425 ~~~~~~~~~~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~--~v~~gY~~~~~~~~--~~-~--~~gw~~T  497 (510)
                      ...........+++|.|.+|++++|+| ++|++++   |+.|||+++||  +++.|||++++.+.  +. |  .+|||+|
T Consensus       428 ~~~~~~~~~~~g~~g~p~~g~~v~ivd-~~g~~~~---g~~GEl~v~gp~p~~~~gy~~~~~~t~~~~~~~~~~~g~~~t  503 (652)
T TIGR01217       428 AGANPTLPVHIGEIQAPGLGTAVQSWD-PEGKPVT---GEVGELVCTNPMPSMPIRFWNDPDGSKYRDAYFDTYPGVWRH  503 (652)
T ss_pred             cCCCCCCCCcCCccCCCcCCCceEEEC-CCCCCCC---CCccEEEEecCCCccccceeCCCccchhHHhhhcCCCCEEEc
Confidence            322222223348899999999999999 8888762   48999999996  68999999998654  22 3  2789999


Q ss_pred             CCe-eeccCCccCC
Q 010455          498 GKN-PWQYTFKKLM  510 (510)
Q Consensus       498 GDl-~~d~dG~~~~  510 (510)
                      ||+ ++|+||++.+
T Consensus       504 GDlg~~d~dG~l~i  517 (652)
T TIGR01217       504 GDWITLTPRGGIVI  517 (652)
T ss_pred             CCcEEECCCCcEEE
Confidence            999 9999998753

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.

>PRK06710 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=8.1e-49  Score=413.61  Aligned_cols=407  Identities=25%  Similarity=0.405  Sum_probs=309.0

Q ss_pred             CCCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHH
Q 010455           41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME  120 (510)
Q Consensus        41 ~~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~l  120 (510)
                      ..+++.++|.+.++.+|+++|+++.   +      +.+||+||.+++.++|++|.+.|+++||+|+++++|++++++++|
T Consensus        22 ~~~~~~~~~~~~a~~~p~~~a~~~~---~------~~~ty~eL~~~~~~la~~L~~~gv~~gd~V~i~~~~~~~~~~~~l   92 (563)
T PRK06710         22 DIQPLHKYVEQMASRYPEKKALHFL---G------KDITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYY   92 (563)
T ss_pred             CcccHHHHHHHHHHHCCCceEEEec---C------eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHH
Confidence            4478999999999999999999865   3      579999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCCh---hhhh---Hhhh-
Q 010455          121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSS---SQKK---EAEE-  193 (510)
Q Consensus       121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~---~~~~-  193 (510)
                      ||+++|++++|++|..+.+++..+++.++++.+++++.....+......  .....++.......   ....   .... 
T Consensus        93 A~~~~G~~~vpi~p~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (563)
T PRK06710         93 GTLLAGGIVVQTNPLYTERELEYQLHDSGAKVILCLDLVFPRVTNVQSA--TKIEHVIVTRIADFLPFPKNLLYPFVQKK  170 (563)
T ss_pred             HHHHcCeEEeccCcccCHHHHHHHHhccCCeEEEEeccchhhhhccchh--hccceeEEeccccccccccccccchhhcc
Confidence            9999999999999999999999999999999999988655443222111  11122222110000   0000   0000 


Q ss_pred             ---------cCceeeeHHHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccC-
Q 010455          194 ---------LGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVC-  263 (510)
Q Consensus       194 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~-  263 (510)
                               .......++.+...............+++++++|||||||.||+|.++|+++..+.......+    ... 
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~----~~~~  246 (563)
T PRK06710        171 QSNLVVKVSESETIHLWNSVEKEVNTGVEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWL----YNCK  246 (563)
T ss_pred             cccccccccccchhhhhhhhhhccccccccccCCCCCEEEEEcCCCCCCCCceEEEehHHHHHHHHHHHhhc----cCCC
Confidence                     000001122221111111111122357899999999999999999999999986554332221    022 


Q ss_pred             CCCcEEEEecChHHHHHHHH-HHHHHhcCcEEEEeCC-CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhH
Q 010455          264 SEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALS  341 (510)
Q Consensus       264 ~~~d~~~~~~pl~h~~g~~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~  341 (510)
                      ..++++++++|++|.+++.. ++.+++.|+++++.+. ++..+++.++++++|++.++|+++..++..            
T Consensus       247 ~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~------------  314 (563)
T PRK06710        247 EGEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAPTIYIALLNS------------  314 (563)
T ss_pred             CCCceEEEeCchHHHHHHHHHHHHHHHcCCeEEEcCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHcC------------
Confidence            34568899999999999865 5568999999998765 899999999999999999999999987641            


Q ss_pred             HHHHHHHHHhhhhhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeeccccccc
Q 010455          342 KKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESC  421 (510)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~  421 (510)
                                               +..+..+++        ++|.+++||+++++++.+++.+.+|..+++.||+||++
T Consensus       315 -------------------------~~~~~~~~~--------~lr~v~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~  361 (563)
T PRK06710        315 -------------------------PLLKEYDIS--------SIRACISGSAPLPVEVQEKFETVTGGKLVEGYGLTESS  361 (563)
T ss_pred             -------------------------CccccCChh--------hhhheeeCCCcCCHHHHHHHHHhhCCCEecccccccCc
Confidence                                     111111222        78999999999999999999998899999999999998


Q ss_pred             cceecccCCCCccCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhhccCccccCCe-
Q 010455          422 SGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGKN-  500 (510)
Q Consensus       422 ~~~~~~~~~~~~~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDl-  500 (510)
                      .+...........++++|+|++++.++++|.+++.+++.|  +.|||+++|+.++.||+++++.+...|.+|||+|||+ 
T Consensus       362 ~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~~g--~~Gel~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGD~~  439 (563)
T PRK06710        362 PVTHSNFLWEKRVPGSIGVPWPDTEAMIMSLETGEALPPG--EIGEIVVKGPQIMKGYWNKPEETAAVLQDGWLHTGDVG  439 (563)
T ss_pred             cccccCcccccccCCccCCCCCCCeEEEEECCCCccCCCC--CceEEEEecCccchhhhCChHHHhhhcccCcccccceE
Confidence            7654433222333478999999999999985556656555  8999999999999999999999998889999999999 


Q ss_pred             eeccCCccC
Q 010455          501 PWQYTFKKL  509 (510)
Q Consensus       501 ~~d~dG~~~  509 (510)
                      ++|+||++.
T Consensus       440 ~~~~~g~~~  448 (563)
T PRK06710        440 YMDEDGFFY  448 (563)
T ss_pred             EEcCCCcEE
Confidence            999999754

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=5.8e-50  Score=491.73  Aligned_cols=378  Identities=19%  Similarity=0.219  Sum_probs=317.9

Q ss_pred             CCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHH
Q 010455           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (510)
Q Consensus        42 ~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA  121 (510)
                      ..++.++|+++++++|+++|+++.   +      +++||+||.++++++|+.|++.|+++|++|+++++|++++++++||
T Consensus      3094 ~~~~~~l~~~~a~~~p~~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~vv~~la 3164 (3956)
T PRK12467       3094 ERLVHQLIEAQVARTPEAPALVFG---D------QQLSYAELNRRANRLAHRLIAIGVGPDVLVGVAVERSVEMIVALLA 3164 (3956)
T ss_pred             cccHHHHHHHHHHhCCCcceEeeC---C------cccCHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeCCCHHHHHHHHH
Confidence            469999999999999999999876   4      5799999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCceeeeH
Q 010455          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW  201 (510)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  201 (510)
                      |+++|++++||+|.++.+++.++++.++++++|++......+...      ....++.++...                 
T Consensus      3165 vl~aGa~~vpld~~~p~~rl~~il~~~~~~~vlt~~~~~~~~~~~------~~~~~~~~~~~~----------------- 3221 (3956)
T PRK12467       3165 VLKAGGAYVPLDPEYPRERLAYMIEDSGVKLLLTQAHLLEQLPAP------AGDTALTLDRLD----------------- 3221 (3956)
T ss_pred             HHhhCcEeecCCCCChHHHHHHHHhCCCCcEEEechhhhhhcccc------cCCceeeecchh-----------------
Confidence            999999999999999999999999999999999987654433111      001112221110                 


Q ss_pred             HHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHH
Q 010455          202 EEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ  281 (510)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~  281 (510)
                        . .............++++++++|||||||.||||+++|+++.+.+.+....+     +++.+|+++.+.|++|..+.
T Consensus      3222 --~-~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~~fd~~~ 3293 (3956)
T PRK12467       3222 --L-NGYSENNPSTRVMGENLAYVIYTSGSTGKPKGVGVRHGALANHLCWIAEAY-----ELDANDRVLLFMSFSFDGAQ 3293 (3956)
T ss_pred             --h-cccCCCCCcccCCCCceEEEEEccCCCCCcceeeehhHHHHHHHHHHHHhc-----CCCcCCEEEEecCccHhHHH
Confidence              0 001111222345689999999999999999999999999999999988887     88999999999999999998


Q ss_pred             HHHHHHHhcCcEEEEeCC---CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhccc
Q 010455          282 IIETHCIHKGCSIGFWRG---DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKK  358 (510)
Q Consensus       282 ~~~l~~l~~G~~~v~~~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (510)
                      ..++.+|+.|+++++.+.   ++..+++.++++++|++.++|+++..+++...                           
T Consensus      3294 ~~~~~~L~~G~~l~i~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~--------------------------- 3346 (3956)
T PRK12467       3294 ERFLWTLICGGCLVVRDNDLWDPEELWQAIHAHRISIACFPPAYLQQFAEDAG--------------------------- 3346 (3956)
T ss_pred             HHHHHHHhCCCEEEECCcccCCHHHHHHHHHHcCCEEEEcCHHHHHHHHhccc---------------------------
Confidence            889999999999999864   88999999999999999999999998864210                           


Q ss_pred             CCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhc-CCCeeeeccccccccceecccCCCC----c
Q 010455          359 GMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESCSGCFTSLADVF----N  433 (510)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~-g~~l~~~yG~tE~~~~~~~~~~~~~----~  433 (510)
                                  ..++        ++||.+++|||++++++.+.+.+.+ ++.+++.||+||++..++.......    .
T Consensus      3347 ------------~~~~--------~~lr~~~~gGe~~~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~ 3406 (3956)
T PRK12467       3347 ------------GADC--------ASLDIYVFGGEAVPPAAFEQVKRKLKPRGLTNGYGPTEAVVTVTLWKCGGDAVCEA 3406 (3956)
T ss_pred             ------------ccCC--------CCceEEEEecCCCCHHHHHHHHHhCCCCEEEeCcccchhEeeeEEEecccccccCC
Confidence                        0011        3799999999999999999988776 5789999999999887765433221    1


Q ss_pred             cCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhh-ccC-------ccccCCe-eecc
Q 010455          434 MIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDG-------WFHTGKN-PWQY  504 (510)
Q Consensus       434 ~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~g-------w~~TGDl-~~d~  504 (510)
                      ...++|+|++|++++|+| +++++++.|  +.|||+|+|+++++||+|+|+.|.++| .++       ||+|||+ ++++
T Consensus      3407 ~~~~iG~p~~~~~~~v~d-~~~~~vp~G--~~GEL~i~G~~v~~GY~~~~~~T~~~F~~~p~~~~g~r~yrTGDl~~~~~ 3483 (3956)
T PRK12467       3407 PYAPIGRPVAGRSIYVLD-GQLNPVPVG--VAGELYIGGVGLARGYHQRPSLTAERFVADPFSGSGGRLYRTGDLARYRA 3483 (3956)
T ss_pred             CCCCCccccCCCEEEEEC-CCCCCCCCC--CCceEEEcchhhhhhccCCcccchhhccCCCCCCCCceeeccchhheecC
Confidence            236899999999999999 888888877  999999999999999999999999999 554       5999999 9999


Q ss_pred             CCccC
Q 010455          505 TFKKL  509 (510)
Q Consensus       505 dG~~~  509 (510)
                      ||.+.
T Consensus      3484 dG~l~ 3488 (3956)
T PRK12467       3484 DGVIE 3488 (3956)
T ss_pred             CCcEE
Confidence            99754

>PRK10252 entF enterobactin synthase subunit F; Provisional

Probab=100.00  E-value=2.1e-49  Score=456.18  Aligned_cols=380  Identities=20%  Similarity=0.264  Sum_probs=315.8

Q ss_pred             CCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHH
Q 010455           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (510)
Q Consensus        42 ~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA  121 (510)
                      ..++.++|+++++++|+++|+++.   +      ..+||+||.++++++|+.|.+.|+++|++|+++++|++++++++||
T Consensus       457 ~~~l~~~~~~~~~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~la~~L~~~g~~~g~~V~l~~~~~~~~i~~~la  527 (1296)
T PRK10252        457 ETTLSALVAQQAAKTPDAPALADA---R------YQFSYREMREQVVALANLLRERGVKPGDSVAVALPRSVFLTLALHA  527 (1296)
T ss_pred             cCCHHHHHHHHHHhCCCCeEEEcC---C------CcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence            468999999999999999999865   3      4799999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCceeeeH
Q 010455          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW  201 (510)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  201 (510)
                      |+++|++++|++|..+.+++..+++.+++++++++......+.+.     ..+ .+..+                     
T Consensus       528 ~~~~G~~~vpld~~~p~~~~~~~l~~~~~~~~i~~~~~~~~~~~~-----~~~-~~~~~---------------------  580 (1296)
T PRK10252        528 IVEAGAAWLPLDTGYPDDRLKMMLEDARPSLLITTADQLPRFADV-----PDL-TSLCY---------------------  580 (1296)
T ss_pred             HHHhCCEEEecCccCHHHHHHHHHHhCCCCEEEECcchhhhcccC-----CCc-eeeec---------------------
Confidence            999999999999999999999999999999999987765443211     000 01111                     


Q ss_pred             HHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHH
Q 010455          202 EEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ  281 (510)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~  281 (510)
                      ....... .........++++++++|||||||.||||+++|+++.+.+.+....+     ++..+|++++..|++|..++
T Consensus       581 ~~~~~~~-~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~~fd~~~  654 (1296)
T PRK10252        581 NAPLAPQ-GAAPLQLSQPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRLLWMQNHY-----PLTADDVVLQKTPCSFDVSV  654 (1296)
T ss_pred             ccccccc-cCCCCCCCCCCCeEEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhc-----CCCCCCEEEEeCCcchhhhH
Confidence            1000000 01111223578999999999999999999999999999999988877     88999999999999999998


Q ss_pred             HHHHHHHhcCcEEEEeCC----CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhcc
Q 010455          282 IIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMK  357 (510)
Q Consensus       282 ~~~l~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (510)
                      ..++.+|+.|+++++.+.    ++..+++.++++++|++.++|+++..+++......                       
T Consensus       655 ~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~-----------------------  711 (1296)
T PRK10252        655 WEFFWPFIAGAKLVMAEPEAHRDPLAMQQFFAEYGVTTTHFVPSMLAAFVASLTPEG-----------------------  711 (1296)
T ss_pred             HHHHHHHhCCCEEEECChhccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhhcccc-----------------------
Confidence            888999999999999763    88999999999999999999999998865321100                       


Q ss_pred             cCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeeccccccccceecccCCC------
Q 010455          358 KGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADV------  431 (510)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~~~~~~~~~------  431 (510)
                                  ....+        .++|.+++||+++++++.+.+.+.+|+++++.||+||++..++......      
T Consensus       712 ------------~~~~~--------~~lr~i~~gGe~l~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~  771 (1296)
T PRK10252        712 ------------ARQSC--------ASLRQVFCSGEALPADLCREWQQLTGAPLHNLYGPTEAAVDVSWYPAFGEELAAV  771 (1296)
T ss_pred             ------------ccccC--------CCccEEEEecCCCCHHHHHHHHhcCCCEEEeCCCcchhhheeeeeeccccccccc
Confidence                        00001        2899999999999999999999888999999999999987666543222      


Q ss_pred             CccCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhh-cc------CccccCCe-eec
Q 010455          432 FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VD------GWFHTGKN-PWQ  503 (510)
Q Consensus       432 ~~~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~------gw~~TGDl-~~d  503 (510)
                      .....++|+|+++++++|+| +++++++.|  +.|||+|+|++++.||+++|+.+.+.| .+      +||+|||+ +++
T Consensus       772 ~~~~~~iG~p~~~~~~~i~d-~~~~~~~~g--~~Gel~i~g~~~~~GY~~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~  848 (1296)
T PRK10252        772 RGSSVPIGYPVWNTGLRILD-ARMRPVPPG--VAGDLYLTGIQLAQGYLGRPDLTASRFIADPFAPGERMYRTGDVARWL  848 (1296)
T ss_pred             CCCCCCcccccCCCEEEEEC-CCCCCCCCC--CceEEEecccccchhhCCCcccchhhcccCCCCCCCEEEecCceEEEc
Confidence            12236799999999999999 888888777  899999999999999999999999998 33      39999999 999


Q ss_pred             cCCccC
Q 010455          504 YTFKKL  509 (510)
Q Consensus       504 ~dG~~~  509 (510)
                      +||.+.
T Consensus       849 ~~G~l~  854 (1296)
T PRK10252        849 DDGAVE  854 (1296)
T ss_pred             CCCcEE
Confidence            999764

>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional

Probab=100.00  E-value=1.2e-48  Score=412.24  Aligned_cols=408  Identities=22%  Similarity=0.357  Sum_probs=315.6

Q ss_pred             CCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHH-hCCCCCCCEEEEEcCCchhHHHHHH
Q 010455           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMR-SRGVNPGDRCGIYGSNCPEWIIAME  120 (510)
Q Consensus        42 ~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~-~~gv~~gd~Vai~~~ns~~~~~~~l  120 (510)
                      ..++.++|.++++.+|+++|+++.   +      +.+||+||.++++++|+.|. +.|+++|++|+++++|++++++++|
T Consensus        24 ~~~~~~~l~~~~~~~~~~~a~~~~---~------~~~Ty~el~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~l   94 (560)
T PRK08751         24 FRTVAEVFATSVAKFADRPAYHSF---G------KTITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATF   94 (560)
T ss_pred             CCcHHHHHHHHHHhCCCCceEEEC---C------ceeeHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHH
Confidence            468999999999999999999864   3      57999999999999999997 6899999999999999999999999


Q ss_pred             HHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCC--h-hh--------hh
Q 010455          121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVS--S-SQ--------KK  189 (510)
Q Consensus       121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~-~~--------~~  189 (510)
                      ||+++|++++|++|..+.+++.++++.++++++++++.....+.+.....  ....++......  . ..        ..
T Consensus        95 A~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (560)
T PRK08751         95 GVLRAGLTVVNVNPLYTPRELKHQLIDSGASVLVVIDNFGTTVQQVIADT--PVKQVITTGLGDMLGFPKAALVNFVVKY  172 (560)
T ss_pred             HHHHhCeEEeccCccCCHHHHHHHHHhcCCeEEEEcchhHHHHHHHhhCC--CccEEEEechhhhcccccchhhhhhhhh
Confidence            99999999999999999999999999999999999987765554433221  122333221000  0 00        00


Q ss_pred             Hh---hh-cCceeeeHHHHHHcCC-CCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCC
Q 010455          190 EA---EE-LGVSCFSWEEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCS  264 (510)
Q Consensus       190 ~~---~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~  264 (510)
                      ..   .. .......+++...... .........++++++++|||||||.||+|.++|.++...+......+.... .+.
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~-~~~  251 (560)
T PRK08751        173 VKKLVPEYRINGAIRFREALALGRKHSMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTG-KLE  251 (560)
T ss_pred             hhccccccCCCccccHHHHHhccCCCCCCCCCCCcccEEEEEcCCCCCCCCCEEEEccHHHHHHHHHHHHhhcccc-ccC
Confidence            00   00 0011223344433221 111223346789999999999999999999999999888776554431111 122


Q ss_pred             C-CcEEEEecChHHHHHHHH-HHHHHhcCcEEEEeCC--CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChh
Q 010455          265 E-EDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGAL  340 (510)
Q Consensus       265 ~-~d~~~~~~pl~h~~g~~~-~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~  340 (510)
                      . .+++++.+|++|.+++.. .+.++..|+++++...  ++..+++.++++++|++.++|.++..+++            
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~------------  319 (560)
T PRK08751        252 EGCEVVITALPLYHIFALTANGLVFMKIGGCNHLISNPRDMPGFVKELKKTRFTAFTGVNTLFNGLLN------------  319 (560)
T ss_pred             CCCceEEEecChHHHHHHHHhhhhHhhccceEEEecCcCCHHHHHHHHHhcceeEecChHHHHHHHHc------------
Confidence            3 467888899999999864 5566777777766543  88999999999999999999999988764            


Q ss_pred             HHHHHHHHHHhhhhhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeecccccc
Q 010455          341 SKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTES  420 (510)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~  420 (510)
                                               .+..++.+++        +||.+++||+++++.+.+.+++.+|+.+++.||+||+
T Consensus       320 -------------------------~~~~~~~~l~--------~lr~v~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~  366 (560)
T PRK08751        320 -------------------------TPGFDQIDFS--------SLKMTLGGGMAVQRSVAERWKQVTGLTLVEAYGLTET  366 (560)
T ss_pred             -------------------------CcCcCCcchh--------hheeeeeCCCCCCHHHHHHHHHHhCCeEEEeeccccC
Confidence                                     1112223344        8999999999999999999999889999999999999


Q ss_pred             ccceecccCCCCccCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhh-ccCccccCC
Q 010455          421 CSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGK  499 (510)
Q Consensus       421 ~~~~~~~~~~~~~~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~gw~~TGD  499 (510)
                      +.+++....+.....+++|.|+++++++|+| +++..++.+  +.|||+++|+.++.||+++++.+.+.| .+|||+|||
T Consensus       367 ~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d-~~~~~~~~g--~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD  443 (560)
T PRK08751        367 SPAACINPLTLKEYNGSIGLPIPSTDACIKD-DAGTVLAIG--EIGELCIKGPQVMKGYWKRPEETAKVMDADGWLHTGD  443 (560)
T ss_pred             CCceecccccccccCCCcCccCCCceEEEEC-CCCCCCCCC--CceEEEEecCccchhhcCChhhhhhccccCCCccccc
Confidence            8776554433333447899999999999999 888877666  899999999999999999999998888 789999999


Q ss_pred             e-eeccCCccC
Q 010455          500 N-PWQYTFKKL  509 (510)
Q Consensus       500 l-~~d~dG~~~  509 (510)
                      + ++|+||++.
T Consensus       444 ~~~~~~~g~l~  454 (560)
T PRK08751        444 IARMDEQGFVY  454 (560)
T ss_pred             eEEEcCCceEE
Confidence            9 999999865

>PRK06018 putative acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.4e-48  Score=409.76  Aligned_cols=404  Identities=20%  Similarity=0.250  Sum_probs=315.6

Q ss_pred             CCCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHH
Q 010455           41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME  120 (510)
Q Consensus        41 ~~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~l  120 (510)
                      .+.++.++|+++++++|+++++...   .  .+..+.+||+||.++++++|++|.+.|+++||+|+++++|+++++++++
T Consensus         8 ~~~~~~~~~~~~a~~~~~~~~~~~~---~--~~~~~~~Ty~el~~~v~~la~~L~~~g~~~gd~v~i~~~~~~~~~~~~l   82 (542)
T PRK06018          8 WPLLCHRIIDHAARIHGNREVVTRS---V--EGPIVRTTYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAWY   82 (542)
T ss_pred             CCCCHHHHHHHHHHhCCCceEEEee---c--cCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHH
Confidence            3469999999999999999999743   1  1224689999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCceeee
Q 010455          121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFS  200 (510)
Q Consensus       121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  200 (510)
                      ||+++|++++|+++..+.+++..+++.++++.++++.+..+.+.+.... ...++.++...+.....    .........
T Consensus        83 a~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~~~~~~~  157 (542)
T PRK06018         83 GIMGIGAICHTVNPRLFPEQIAWIINHAEDRVVITDLTFVPILEKIADK-LPSVERYVVLTDAAHMP----QTTLKNAVA  157 (542)
T ss_pred             HHHhcCeEeeccccccCHHHHHHHHhccCCCEEEEccccHHHHHHHHhh-CCCccEEEEeccccccc----ccCcccccc
Confidence            9999999999999999999999999999999999998877666544332 23445555544321100    000012234


Q ss_pred             HHHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHH-HHH-hhhhhhhhhccccCCCCcEEEEecChHHH
Q 010455          201 WEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIV-AEV-LSVDQMFVVTGKVCSEEDTYFSFLPLAHI  278 (510)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~-~~~-~~~~~~~~~~~~~~~~~d~~~~~~pl~h~  278 (510)
                      +++++.............++++++++|||||||.||+|.+||++++ ... ......+     ++..+|+++..+|++|.
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~-----~~~~~d~~~~~~p~~h~  232 (542)
T PRK06018        158 YEEWIAEADGDFAWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDAL-----GTSAADTMLPVVPLFHA  232 (542)
T ss_pred             HHHHhccCCcccCcccCCccceeeEEecCCCCCCCcEEEEechhHHHHHHHHhhhhhc-----CCCCCCEEEEecCHHHH
Confidence            5555543322222234466789999999999999999999999743 222 2222333     67889999999999999


Q ss_pred             HHHHHHHHHHhcCcEEEEeCC--CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhc
Q 010455          279 YDQIIETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNM  356 (510)
Q Consensus       279 ~g~~~~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (510)
                      +++...+.++..|+++++...  ++..+++.++++++|++.++|+++..++......                       
T Consensus       233 ~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~-----------------------  289 (542)
T PRK06018        233 NSWGIAFSAPSMGTKLVMPGAKLDGASVYELLDTEKVTFTAGVPTVWLMLLQYMEKE-----------------------  289 (542)
T ss_pred             hhhHHHHhhhhcCceEEccCcCCCHHHHHHHHHhcCCceeecCcHHHHHHHhccccc-----------------------
Confidence            998877788999999988653  8899999999999999999999999887532110                       


Q ss_pred             ccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeeccccccccceecccC-CC----
Q 010455          357 KKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLA-DV----  431 (510)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~~~~~~~-~~----  431 (510)
                                    ..++        ++||.+++||+++++++.+++++ +++.+++.||+||++.+.+.... ..    
T Consensus       290 --------------~~~~--------~~lr~~~~~G~~l~~~~~~~~~~-~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~  346 (542)
T PRK06018        290 --------------GLKL--------PHLKMVVCGGSAMPRSMIKAFED-MGVEVRHAWGMTEMSPLGTLAALKPPFSKL  346 (542)
T ss_pred             --------------CCCc--------ccceEEEEcCCCCCHHHHHHHHH-hCCCeEeeecccccCcccccccCccccccC
Confidence                          0111        28999999999999999999999 89999999999999876554321 10    


Q ss_pred             -----CccCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhh-ccCccccCCe-eecc
Q 010455          432 -----FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGKN-PWQY  504 (510)
Q Consensus       432 -----~~~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~gw~~TGDl-~~d~  504 (510)
                           .....++|+|.++++++|+| +++..++.+.+..|||+++|++++.||+++.   ...+ .+|||+|||+ ++|+
T Consensus       347 ~~~~~~~~~~~~G~~~~g~~i~v~d-~~~~~~~~~~~~~Gel~i~g~~~~~gy~~~~---~~~~~~~~~~~TGDl~~~~~  422 (542)
T PRK06018        347 PGDARLDVLQKQGYPPFGVEMKITD-DAGKELPWDGKTFGRLKVRGPAVAAAYYRVD---GEILDDDGFFDTGDVATIDA  422 (542)
T ss_pred             CchhhhhccccCCCCCCCcEEEEEC-CCCCCCCCCCCceeEEEEecCCcchhhhcCc---ccEecCCcEEEcCCEEEEcC
Confidence                 01135789999999999999 8888887755568999999999999999842   2333 6899999999 9999


Q ss_pred             CCccC
Q 010455          505 TFKKL  509 (510)
Q Consensus       505 dG~~~  509 (510)
                      ||++.
T Consensus       423 ~g~~~  427 (542)
T PRK06018        423 YGYMR  427 (542)
T ss_pred             CccEE
Confidence            99764

>PRK09088 acyl-CoA synthetase; Validated

Probab=100.00  E-value=7e-49  Score=407.15  Aligned_cols=367  Identities=23%  Similarity=0.325  Sum_probs=295.1

Q ss_pred             HHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHHHhcCCeE
Q 010455           50 CDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITY  129 (510)
Q Consensus        50 ~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA~~~~G~~~  129 (510)
                      +.+++.+||++|+.+.   .+.    +.+||.||.++++++|.+|.+.|+++|++|+++++|++++++++|||+++|+++
T Consensus         2 ~~~a~~~p~~~a~~~~---~~~----~~~ty~~l~~~v~~~a~~l~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~   74 (488)
T PRK09088          2 AFHARLQPQRLAAVDL---ALG----RRWTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIY   74 (488)
T ss_pred             chhhhhCCCceEEEec---CCC----cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEE
Confidence            4567889999998753   111    579999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCceeeeHHHHHHcC-
Q 010455          130 VPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLG-  208 (510)
Q Consensus       130 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  208 (510)
                      +|+++..+.+++..+++.++++++|+++.......           ..                     ..++++.... 
T Consensus        75 v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~-----------~~---------------------~~~~~~~~~~~  122 (488)
T PRK09088         75 VPLNWRLSASELDALLQDAEPRLLLGDDAVAAGRT-----------DV---------------------EDLAAFIASAD  122 (488)
T ss_pred             EeeCccCCHHHHHHHHHhCCCCEEEEcchhhcccc-----------cc---------------------cchhhhhhhcc
Confidence            99999999999999999999999999865432100           00                     0111111110 


Q ss_pred             -CCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHH-HHH
Q 010455          209 -TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII-ETH  286 (510)
Q Consensus       209 -~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~-~l~  286 (510)
                       ...........+++++++|||||||.||+|.++|+++...+..+....     ....+|++++.+|++|.+++.. ++.
T Consensus       123 ~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~~~~g~~~~~~~  197 (488)
T PRK09088        123 ALEPADTPSIPPERVSLILFTSGTSGQPKGVMLSERNLQQTAHNFGVLG-----RVDAHSSFLCDAPMFHIIGLITSVRP  197 (488)
T ss_pred             ccccccCCCCCCCCceEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhh-----CCCCCcEEEEecchHHHHHHHHHHHH
Confidence             001111233567899999999999999999999999988877766555     6778999999999999999875 666


Q ss_pred             HHhcCcEEEEeCC-CHhhHHHHHh--hhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhcccCCCCC
Q 010455          287 CIHKGCSIGFWRG-DVRYLMEDIQ--ELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQN  363 (510)
Q Consensus       287 ~l~~G~~~v~~~~-~~~~~~~~i~--~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (510)
                      ++..|+++++.+. ++..++..+.  ++++|+++++|.++..+...                                  
T Consensus       198 ~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~P~~~~~l~~~----------------------------------  243 (488)
T PRK09088        198 VLAVGGSILVSNGFEPKRTLGRLGDPALGITHYFCVPQMAQAFRAQ----------------------------------  243 (488)
T ss_pred             HHhcCCEEEEcCCCCHHHHHHHHHhhccCCcEEeeHHHHHHHHHhC----------------------------------
Confidence            8899999988765 7888888886  48999999999999887541                                  


Q ss_pred             CchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeeccccccccceecccCC--CCccCCccccc
Q 010455          364 KAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLAD--VFNMIGTVGVP  441 (510)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~~~~~~~~--~~~~~~svG~p  441 (510)
                         +..+..++        ++||.+++||++++.+..+.+.+. |+++++.||+||++.+.......  ....++++|+|
T Consensus       244 ---~~~~~~~~--------~~l~~~~~gG~~~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~~  311 (488)
T PRK09088        244 ---PGFDAAAL--------RHLTALFTGGAPHAAEDILGWLDD-GIPMVDGFGMSEAGTVFGMSVDCDVIRAKAGAAGIP  311 (488)
T ss_pred             ---cCcCcccc--------ccceEEEecCCCCCHHHHHHHHHh-CCceeeeecccccccccccCCCcccccccCCccccC
Confidence               11111112        289999999999999888877765 89999999999998754332211  12244789999


Q ss_pred             cCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhh-ccCccccCCe-eeccCCccC
Q 010455          442 MTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGKN-PWQYTFKKL  509 (510)
Q Consensus       442 ~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~gw~~TGDl-~~d~dG~~~  509 (510)
                      +|+++++|+| +++.+++.+  +.|||+|+|++++.||+++++.+.+.| .+|||+|||+ ++|+||++.
T Consensus       312 ~~~~~~~i~d-~~~~~~~~g--~~Gel~v~~~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~  378 (488)
T PRK09088        312 TPTVQTRVVD-DQGNDCPAG--VPGELLLRGPNLSPGYWRRPQATARAFTGDGWFRTGDIARRDADGFFW  378 (488)
T ss_pred             CCCcEEEEEC-CCCCCCcCC--CceEEEEECCccchhhcCChhhhhhhhcCCCCeeecceEEEcCCCcEE
Confidence            9999999999 788777665  899999999999999999999998888 6899999999 999999864

>PLN02479 acetate-CoA ligase

Probab=100.00  E-value=7.2e-49  Score=413.86  Aligned_cols=408  Identities=22%  Similarity=0.306  Sum_probs=308.3

Q ss_pred             CCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHH
Q 010455           43 ESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC  122 (510)
Q Consensus        43 ~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA~  122 (510)
                      .+++..++..+..+|+++|+.+.   +      ..+||+||.++++++|.+|.+.|+++||+|+++++|+++++++++||
T Consensus        20 ~~~~~~~~~~~~~~p~~~a~~~~---~------~~~ty~eL~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~   90 (567)
T PLN02479         20 LTPLWFLERAAVVHPTRKSVVHG---S------VRYTWAQTYQRCRRLASALAKRSIGPGSTVAVIAPNIPAMYEAHFGV   90 (567)
T ss_pred             cCHHHHHHHHHhhCCCceEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHH
Confidence            46899999999999999999754   3      47999999999999999999999999999999999999999999999


Q ss_pred             HhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccC------CCCccEEEEecCCChhhhhHhhhcCc
Q 010455          123 NSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRC------CLYLKTIVSFANVSSSQKKEAEELGV  196 (510)
Q Consensus       123 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~~~  196 (510)
                      +++|++++|+++..+.+++.++++.++++++|+++...+...+.....      ......++.+.+..............
T Consensus        91 ~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (567)
T PLN02479         91 PMAGAVVNCVNIRLNAPTIAFLLEHSKSEVVMVDQEFFTLAEEALKILAEKKKSSFKPPLLIVIGDPTCDPKSLQYALGK  170 (567)
T ss_pred             HhCCcEEEEeccccCHHHHHHHHhhcCceEEEEchhhhhHHHHHHHHHhhcccccCCCceEEEecCCcCCcccccccccc
Confidence            999999999999999999999999999999999987655433321110      01122344443221100000000111


Q ss_pred             eeeeHHHHHHcCCCCCC-CCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecCh
Q 010455          197 SCFSWEEFLQLGTLDCE-LPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPL  275 (510)
Q Consensus       197 ~~~~~~~~~~~~~~~~~-~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl  275 (510)
                      ....+++++........ ......+++++++|||||||.||+|.+||+++..........+     .+..+|++++.+|+
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~  245 (567)
T PLN02479        171 GAIEYEKFLETGDPEFAWKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYLMALSNALIW-----GMNEGAVYLWTLPM  245 (567)
T ss_pred             CcccHHHHHhccccccccCCCCCcccceEEEECCCCCCCCcEEEeccHHHHHHHHHHHhhc-----CCCCCCEEEEecch
Confidence            23346665543311111 1122345678899999999999999999999877666555545     67889999999999


Q ss_pred             HHHHHHHHHH-HHHhcCcEEEEeCCCHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhh
Q 010455          276 AHIYDQIIET-HCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLG  354 (510)
Q Consensus       276 ~h~~g~~~~l-~~l~~G~~~v~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (510)
                      +|..++...+ ..++.|.++++...++..+++.++++++|++.++|.++..+++.....                     
T Consensus       246 ~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~---------------------  304 (567)
T PLN02479        246 FHCNGWCFTWTLAALCGTNICLRQVTAKAIYSAIANYGVTHFCAAPVVLNTIVNAPKSE---------------------  304 (567)
T ss_pred             hhhhhHHHHHHHHhhcCceEeccCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhhhhhc---------------------
Confidence            9999976544 456777777766669999999999999999999999999886521100                     


Q ss_pred             hcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeeccccccccceecccC--C--
Q 010455          355 NMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLA--D--  430 (510)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~~~~~~~--~--  430 (510)
                                     ...++        .+++.++++|+++++.+.+.+++. +.++++.||+||+++.++....  .  
T Consensus       305 ---------------~~~~~--------~~l~~~~~~G~~~~~~~~~~~~~~-~~~~~~~yG~tE~~~~~~~~~~~~~~~  360 (567)
T PLN02479        305 ---------------TILPL--------PRVVHVMTAGAAPPPSVLFAMSEK-GFRVTHTYGLSETYGPSTVCAWKPEWD  360 (567)
T ss_pred             ---------------ccccc--------cceeEEEEcCCCCCHHHHHHHHhc-CCceecccccccccccccceecccccc
Confidence                           00011        278999999999999999998876 8999999999998654332110  0  


Q ss_pred             ------CCccCCccccccCCeE-EEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhhccCccccCCe-ee
Q 010455          431 ------VFNMIGTVGVPMTTVE-ARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGKN-PW  502 (510)
Q Consensus       431 ------~~~~~~svG~p~~g~~-i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDl-~~  502 (510)
                            ......++|.+.+|++ ++|+|.+++.+++.+.++.|||+++|++++.|||++++.+.+.|.+|||+|||+ ++
T Consensus       361 ~~~~~~~~~~~~~~g~~~~g~~~~~i~d~~~~~~~~~~g~~~GEl~v~g~~~~~GY~~~~~~t~~~~~~g~~~TGDl~~~  440 (567)
T PLN02479        361 SLPPEEQARLNARQGVRYIGLEGLDVVDTKTMKPVPADGKTMGEIVMRGNMVMKGYLKNPKANEEAFANGWFHSGDLGVK  440 (567)
T ss_pred             ccCcccccccccccCCCcCCcCceeEEcCCCCcccCCCCCCceEEEEeccchhhhhhcCcccccchhcCCceecceeEEE
Confidence                  0111246788888886 888884456666554446899999999999999999999999999999999999 99


Q ss_pred             ccCCccC
Q 010455          503 QYTFKKL  509 (510)
Q Consensus       503 d~dG~~~  509 (510)
                      |+||++.
T Consensus       441 ~~~g~l~  447 (567)
T PLN02479        441 HPDGYIE  447 (567)
T ss_pred             cCCccEE
Confidence            9999764

>PRK13388 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.4e-48  Score=409.12  Aligned_cols=379  Identities=17%  Similarity=0.172  Sum_probs=297.2

Q ss_pred             CCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCC-CCCCEEEEEcCCchhHHHHHHH
Q 010455           43 ESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGV-NPGDRCGIYGSNCPEWIIAMEA  121 (510)
Q Consensus        43 ~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv-~~gd~Vai~~~ns~~~~~~~lA  121 (510)
                      +++.++|..++  .|+++|+++.   +      ..+||.||.++++++|..|.+.|+ .+|++|+++++|+++++++++|
T Consensus         3 ~~~~~~l~~~~--~p~~~Al~~~---~------~~lTy~el~~~~~~la~~L~~~g~~~~~~~V~i~~~n~~~~v~~~lA   71 (540)
T PRK13388          3 DTIAQLLRDRA--GDDTIAVRYG---D------RTWTWREVLAEAAARAAALIALADPDRPLHVGVLLGNTPEMLFWLAA   71 (540)
T ss_pred             hhHHHHHHhhc--cCCceEEEEC---C------ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCcHHHHHHHH
Confidence            57888888765  6999999764   3      479999999999999999999999 8999999999999999999999


Q ss_pred             HHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCceeeeH
Q 010455          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW  201 (510)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  201 (510)
                      |+++|++++|++|..+.+++..+++.++++++|++++....+.+..   ...++ ++.++..                .+
T Consensus        72 ~~~~Ga~~v~l~p~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~---~~~~~-~i~~~~~----------------~~  131 (540)
T PRK13388         72 AALGGYVLVGLNTTRRGAALAADIRRADCQLLVTDAEHRPLLDGLD---LPGVR-VLDVDTP----------------AY  131 (540)
T ss_pred             HHhCCCEEEEecccCChHHHHHHHHhcCCCEEEEChhhhHHHHhhc---ccCce-EEEccch----------------hh
Confidence            9999999999999999999999999999999999887765543321   12222 2222211                12


Q ss_pred             HHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHH
Q 010455          202 EEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ  281 (510)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~  281 (510)
                      .+++.......+.....++++++++|||||||.||+|.++|+++...+......+     ++..+|+++..+|++|..++
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~~  206 (540)
T PRK13388        132 AELVAAAGALTPHREVDAMDPFMLIFTSGTTGAPKAVRCSHGRLAFAGRALTERF-----GLTRDDVCYVSMPLFHSNAV  206 (540)
T ss_pred             hhhhccccCcCCCCCCCCCCeEEEEECCCCCCCCCEEEecHHHHHHHHHHHHHHh-----CCCCCCEEEEeeCchhhcch
Confidence            2222211111112234678999999999999999999999999998888877777     78899999999999999988


Q ss_pred             HH-HHHHHhcCcEEEEeCC-CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhcccC
Q 010455          282 II-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKG  359 (510)
Q Consensus       282 ~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (510)
                      .. .+.++..|+++++.+. ++..+++.++++++|++..+|..+..++..                              
T Consensus       207 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~p~~l~~l~~~------------------------------  256 (540)
T PRK13388        207 MAGWAPAVASGAAVALPAKFSASGFLDDVRRYGATYFNYVGKPLAYILAT------------------------------  256 (540)
T ss_pred             HHHHHHHHHcCcEEEECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhC------------------------------
Confidence            75 4458999999988764 899999999999999999999998877531                              


Q ss_pred             CCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeeccccccccceecccCCCCccCCccc
Q 010455          360 MPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVG  439 (510)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~~~~~~~~~~~~~~svG  439 (510)
                             +.......        .+++.+ + |++++++..+.+.+.+|+++++.||+||++.+++...   ....+++|
T Consensus       257 -------~~~~~~~~--------~~l~~~-~-G~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~---~~~~~~vG  316 (540)
T PRK13388        257 -------PERPDDAD--------NPLRVA-F-GNEASPRDIAEFSRRFGCQVEDGYGSSEGAVIVVREP---GTPPGSIG  316 (540)
T ss_pred             -------CCCccccc--------cceEEE-E-CCCCCHHHHHHHHHHhCCceecccccccccceeecCC---CCCCCCCC
Confidence                   00000000        156643 3 5667788888888888999999999999987665432   12347899


Q ss_pred             cccCCeEEE-----------EeecCCCCcCCCCCCCcceEEEe-cCCccccccCCchhhhhhhccCccccCCe-eeccCC
Q 010455          440 VPMTTVEAR-----------LESVPEMGYDALSSVPRGEICLR-GNTLFSGYYKRPDLTEEVIVDGWFHTGKN-PWQYTF  506 (510)
Q Consensus       440 ~p~~g~~i~-----------ivd~~~~~~~~~~~~~~Gei~v~-g~~v~~gY~~~~~~~~~~~~~gw~~TGDl-~~d~dG  506 (510)
                      +|++|+++.           ++| ++|+.+. .+++.|||+++ |++++.||+++|+.+.+.|.+|||+|||+ ++|+||
T Consensus       317 ~p~~g~~i~~~~~~~~~~~~~~d-~~g~~~~-~~~~~GEl~v~~g~~~~~gY~~~~~~t~~~~~~g~~~TGD~~~~~~dg  394 (540)
T PRK13388        317 RGAPGVAIYNPETLTECAVARFD-AHGALLN-ADEAIGELVNTAGAGFFEGYYNNPEATAERMRHGMYWSGDLAYRDADG  394 (540)
T ss_pred             CCCCCcEEEcCCCCccccceecc-Ccccccc-CCCcceEEEEecCCcccccccCChHHHHHHhhcCceeccceEEEcCCC
Confidence            999997653           333 3333332 23468999998 99999999999999999998999999999 999999


Q ss_pred             ccC
Q 010455          507 KKL  509 (510)
Q Consensus       507 ~~~  509 (510)
                      ++.
T Consensus       395 ~l~  397 (540)
T PRK13388        395 WIY  397 (540)
T ss_pred             cEE
Confidence            764

>PRK13383 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.8e-48  Score=406.68  Aligned_cols=376  Identities=20%  Similarity=0.216  Sum_probs=300.0

Q ss_pred             CCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHH
Q 010455           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (510)
Q Consensus        42 ~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA  121 (510)
                      ..++.+.|.++++++|+++|+.+.   +      ..+||+||.++++++|++|++.|+++||+|+++++|++++++++||
T Consensus        34 ~~~~~~~~~~~a~~~p~~~a~~~~---~------~~lTy~el~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~~~la  104 (516)
T PRK13383         34 GTNPYTLLAVTAARWPGRTAIIDD---D------GALSYRELQRATESLARRLTRDGVAPGRAVGVMCRNGRGFVTAVFA  104 (516)
T ss_pred             CCcHHHHHHHHHHHCCCCcEEEeC---C------CcEeHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHH
Confidence            578999999999999999999754   3      4799999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCceeeeH
Q 010455          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW  201 (510)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  201 (510)
                      |+++|++++|+++.++.+++.++++.++++.+++++.....+....       ..++.++...                 
T Consensus       105 ~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~-------~~~~~~~~~~-----------------  160 (516)
T PRK13383        105 VGLLGADVVPISTEFRSDALAAALRAHHISTVVADNEFAERIAGAD-------DAVAVIDPAT-----------------  160 (516)
T ss_pred             HHHhCeEEEEcCccCCHHHHHHHHhcCCCCEEEEchhHHHHHHhhh-------cceEEeccch-----------------
Confidence            9999999999999999999999999999999999887665543321       1122221110                 


Q ss_pred             HHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHH--hhhhhhhhhccccCCCCcEEEEecChHHHH
Q 010455          202 EEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEV--LSVDQMFVVTGKVCSEEDTYFSFLPLAHIY  279 (510)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~--~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~  279 (510)
                      .....     ....+...++.++++|||||||.||+|.++|.......  ......+     ++..+|+++..+|++|.+
T Consensus       161 ~~~~~-----~~~~p~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~-----~~~~~d~~~~~~pl~h~~  230 (516)
T PRK13383        161 AGAEE-----SGGRPAVAAPGRIVLLTSGTTGKPKGVPRAPQLRSAVGVWVTILDRT-----RLRTGSRISVAMPMFHGL  230 (516)
T ss_pred             hhhhc-----CCCCCCCCCCCcEEEECCCCCCCCCeeeecchhhhhhhhHHhHHhhh-----ccCCCCeEEEecCCcchh
Confidence            00000     00111224566799999999999999999997432111  1122223     677899999999999999


Q ss_pred             HHHHHHHHHhcCcEEEEeCC-CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhccc
Q 010455          280 DQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKK  358 (510)
Q Consensus       280 g~~~~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (510)
                      |+...+.++..|+++++... ++..+++.++++++|.+.++|.++..+.......                         
T Consensus       231 g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-------------------------  285 (516)
T PRK13383        231 GLGMLMLTIALGGTVLTHRHFDAEAALAQASLHRADAFTAVPVVLARILELPPRV-------------------------  285 (516)
T ss_pred             hHHHHHHHHhcCCEEEECCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHhccccc-------------------------
Confidence            99878889999999987664 8999999999999999999999998886421100                         


Q ss_pred             CCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeeccccccccceecccCCCCccCCcc
Q 010455          359 GMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTV  438 (510)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~~~~~~~~~~~~~~sv  438 (510)
                                .+..++        +++|.+++||+++++++.++|.+.+|..+++.||+||++..+...........+++
T Consensus       286 ----------~~~~~~--------~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~  347 (516)
T PRK13383        286 ----------RARNPL--------PQLRVVMSSGDRLDPTLGQRFMDTYGDILYNGYGSTEVGIGALATPADLRDAPETV  347 (516)
T ss_pred             ----------cccCCC--------CceEEEEECCCCCCHHHHHHHHHHcCchhhhcccccccccceeccccccccCCCcc
Confidence                      000011        28999999999999999999999999999999999999876554433333345789


Q ss_pred             ccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhhccCccccCCe-eeccCCccC
Q 010455          439 GVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGKN-PWQYTFKKL  509 (510)
Q Consensus       439 G~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDl-~~d~dG~~~  509 (510)
                      |+|+|+++++|+| +++++++.+  +.|||+++|+.++.||++++.   +.+.+|||+|||+ ++|+||++.
T Consensus       348 G~~~~~~~~~i~d-~~~~~~~~g--~~Gel~v~g~~~~~~Y~~~~~---~~~~~g~~~TGDl~~~d~~G~l~  413 (516)
T PRK13383        348 GKPVAGCPVRILD-RNNRPVGPR--VTGRIFVGGELAGTRYTDGGG---KAVVDGMTSTGDMGYLDNAGRLF  413 (516)
T ss_pred             cCCCCCcEEEEEC-CCCCCCCCC--CceEEEEecCcccccccCCch---hheecCceecceeEEEcCCccEE
Confidence            9999999999999 888766655  899999999999999998764   3346899999999 999999864

>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=2.8e-49  Score=413.11  Aligned_cols=375  Identities=17%  Similarity=0.203  Sum_probs=282.7

Q ss_pred             CHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHHH
Q 010455           44 SPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACN  123 (510)
Q Consensus        44 sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA~~  123 (510)
                      -+.++|+++++++|+++|+++.   +  .+.++.+||+||.++++++|.+|.+.  ++||+|+++++|++++++++|||+
T Consensus         3 ~~~~~l~~~~~~~~~~~a~~~~---~--~~~~~~~ty~el~~~~~~lA~~L~~~--~~g~~V~l~~~~~~e~~~~~la~~   75 (525)
T PRK05851          3 ELAAALSDAMTASGRDLVVLDR---E--SGLWRRHPWPEVHGRAENVAARLLDR--DRPGAVGLVGEPTVELVAAIQGAW   75 (525)
T ss_pred             hHHHHHHHHhcCCCCceEEeCC---C--CCcceeecHHHHHHHHHHHHHHHHhc--CCCCeEEEEcCCCHHHHHHHHHHH
Confidence            3889999999999999999865   3  23468899999999999999999988  799999999999999999999999


Q ss_pred             hcCCeEEEecCC-------CCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCc
Q 010455          124 SQAITYVPLYDT-------LGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGV  196 (510)
Q Consensus       124 ~~G~~~v~l~~~-------~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  196 (510)
                      ++|+++++++..       ...+++..+++.++++++|++......+.....    .    +.+.+              
T Consensus        76 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~----~----~~~~~--------------  133 (525)
T PRK05851         76 LAGAAVSILPGPVRGADDGRWADATLTRFAGIGVRTVLSHGSHLERLRAVDS----S----VTVHD--------------  133 (525)
T ss_pred             HcCCCCcCCCCCCCccchhhHHHHHHHHHHhcCCCEEEeCHHHHHHHHHhhc----c----ccccc--------------
Confidence            999986543311       123455667899999999998765544432110    0    00000              


Q ss_pred             eeeeHHHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCC-CCcEEEEecCh
Q 010455          197 SCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCS-EEDTYFSFLPL  275 (510)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~-~~d~~~~~~pl  275 (510)
                          +........ ........++++++|+|||||||.||||+++|+++.+.+..+...+     ++. .+|++++++|+
T Consensus       134 ----~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~~d~~l~~~pl  203 (525)
T PRK05851        134 ----LATAAHTNR-SASLTPPDSGGPAVLQGTAGSTGTPRTAILSPGAVLSNLRGLNARV-----GLDAATDVGCSWLPL  203 (525)
T ss_pred             ----ccccccccc-cccCCCCCCCCeEEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHh-----CCCCCCCeEEEcCCC
Confidence                000000000 0011224578999999999999999999999999999998877776     777 89999999999


Q ss_pred             HHHHHHHHHHHHHhcCcEEEEeCC-----CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHH
Q 010455          276 AHIYDQIIETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYN  350 (510)
Q Consensus       276 ~h~~g~~~~l~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  350 (510)
                      +|.+++..++.+++.|+++++.+.     ++..+++.++++++|++...|.++..+.+ ...                  
T Consensus       204 ~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~p~~~~~~l~~-~~~------------------  264 (525)
T PRK05851        204 YHDMGLAFLLTAALAGAPLWLAPTTAFSASPFRWLSWLSDSRATLTAAPNFAYNLIGK-YAR------------------  264 (525)
T ss_pred             ccCccHHHHHHHHHcCCeEEEcCHHHHHHCHHHHHHHHHHhCCeEEeCCcHHHHHHHH-hhc------------------
Confidence            999999888889999999998762     57889999999999987554444443322 100                  


Q ss_pred             hhhhhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHh---cCC---Ceeeeccccccccce
Q 010455          351 YKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVT---SGA---PLTQGYGLTESCSGC  424 (510)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~---~g~---~l~~~yG~tE~~~~~  424 (510)
                                       .....+++        +||.+++||+++++++.++|.+.   +|.   .+++.||+||++..+
T Consensus       265 -----------------~~~~~~l~--------~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~  319 (525)
T PRK05851        265 -----------------RVSDVDLG--------ALRVALNGGEPVDCDGFERFATAMAPFGFDAGAAAPSYGLAESTCAV  319 (525)
T ss_pred             -----------------cccCCCHH--------HhheeEeccccCCHHHHHHHHHHHhhcCCChhhcccccchhhhceEE
Confidence                             00111222        79999999999999999888764   354   499999999998766


Q ss_pred             ecccCC--------------CCccCCccccccCCeEEEEeecCCCC-cCCCCCCCcceEEEecCCccccccCCchhhhhh
Q 010455          425 FTSLAD--------------VFNMIGTVGVPMTTVEARLESVPEMG-YDALSSVPRGEICLRGNTLFSGYYKRPDLTEEV  489 (510)
Q Consensus       425 ~~~~~~--------------~~~~~~svG~p~~g~~i~ivd~~~~~-~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~  489 (510)
                      +.....              .....+++|+|+||++++|+| +++. +++.|  +.|||+|+|++++.||+++++.+   
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d-~~~~~~~~~g--~~GEl~v~g~~~~~GY~~~~~~~---  393 (525)
T PRK05851        320 TVPVPGIGLRVDEVTTDDGSGARRHAVLGNPIPGMEVRISP-GDGAAGVAGR--EIGEIEIRGASMMSGYLGQAPID---  393 (525)
T ss_pred             EecCCCCCceeeeeccccCcccceeeeecCCCCCcEEEEEC-CCCCccCCCC--CeEEEEEecCchhhccccCCccC---
Confidence            543221              012236899999999999999 6654 34444  89999999999999999998643   


Q ss_pred             hccCccccCCe-eeccCCccC
Q 010455          490 IVDGWFHTGKN-PWQYTFKKL  509 (510)
Q Consensus       490 ~~~gw~~TGDl-~~d~dG~~~  509 (510)
                       .+|||+|||+ ++| +|.+.
T Consensus       394 -~~~~~~TGDl~~~~-~G~l~  412 (525)
T PRK05851        394 -PDDWFPTGDLGYLV-DGGLV  412 (525)
T ss_pred             -CCCceeccceEEEE-CCEEE
Confidence             3789999999 997 57643

>PRK08974 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=8.4e-48  Score=405.64  Aligned_cols=407  Identities=20%  Similarity=0.288  Sum_probs=313.2

Q ss_pred             CCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHh-CCCCCCCEEEEEcCCchhHHHHHH
Q 010455           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRS-RGVNPGDRCGIYGSNCPEWIIAME  120 (510)
Q Consensus        42 ~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~-~gv~~gd~Vai~~~ns~~~~~~~l  120 (510)
                      ..++.++|+++++++|+++|+++.   +      +.+||.||.++++++|.+|.+ .|+++|++|+++++|++++++++|
T Consensus        22 ~~~l~~~l~~~a~~~p~~~a~~~~---~------~~lTy~~l~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~l   92 (560)
T PRK08974         22 YQSLVDMFEQAVARYADQPAFINM---G------EVMTFRKLEERSRAFAAYLQNGLGLKKGDRVALMMPNLLQYPIALF   92 (560)
T ss_pred             cccHHHHHHHHHHhCCCCceEEEC---C------ccccHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHH
Confidence            457999999999999999999854   3      479999999999999999984 899999999999999999999999


Q ss_pred             HHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChh--hhh---------
Q 010455          121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSS--QKK---------  189 (510)
Q Consensus       121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~---------  189 (510)
                      ||+++|++++|++|..+.+++.++++.++++.++++++....+.+.....  ....++........  ...         
T Consensus        93 A~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (560)
T PRK08974         93 GILRAGMIVVNVNPLYTPRELEHQLNDSGAKAIVIVSNFAHTLEKVVFKT--PVKHVILTRMGDQLSTAKGTLVNFVVKY  170 (560)
T ss_pred             HHHHcCcEEeccCccCCHHHHHHHHHhcCceEEEEeccccHHHHHHhhhc--CcceEEEecccccccccccccccchhhh
Confidence            99999999999999999999999999999999999876555443322111  11222211110000  000         


Q ss_pred             -H---hhhcCceeeeHHHHHHcCCC-CCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCC
Q 010455          190 -E---AEELGVSCFSWEEFLQLGTL-DCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCS  264 (510)
Q Consensus       190 -~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~  264 (510)
                       .   ..........+.+....... ........++++++++|||||||.||+|.++|.++..++......+..  ....
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~--~~~~  248 (560)
T PRK08974        171 IKRLVPKYHLPDAISFRSALHKGRRMQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGP--LLHP  248 (560)
T ss_pred             cccccccccCCCcccHHHHhhccCCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEchHHHHHHHHHHHHhhcc--ccCC
Confidence             0   00000011222333222211 111223467899999999999999999999999998877654333310  0234


Q ss_pred             CCcEEEEecChHHHHHHHH-HHHHHhcCcEEEEeCC--CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhH
Q 010455          265 EEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALS  341 (510)
Q Consensus       265 ~~d~~~~~~pl~h~~g~~~-~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~  341 (510)
                      ..+.++..+|++|.+++.. .+.+++.|+++++...  ++..+++.++++++|++.++|.++..+....           
T Consensus       249 ~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~-----------  317 (560)
T PRK08974        249 GKELVVTALPLYHIFALTVNCLLFIELGGQNLLITNPRDIPGFVKELKKYPFTAITGVNTLFNALLNNE-----------  317 (560)
T ss_pred             CccEEEEeCcHHHHHHHHHHHHHHhhcCCeEEEecCccCHHHHHHHHHhcCcceEcCcHHHHHHHHhCc-----------
Confidence            5678889999999999764 6667889998777643  7889999999999999999999999986411           


Q ss_pred             HHHHHHHHHhhhhhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeeccccccc
Q 010455          342 KKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESC  421 (510)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~  421 (510)
                                                .....++        +++|.+++||+++++.+.+++++.+|+.+++.||+||++
T Consensus       318 --------------------------~~~~~~~--------~~lr~~~~gg~~~~~~~~~~~~~~~g~~~~~~YG~tE~~  363 (560)
T PRK08974        318 --------------------------EFQELDF--------SSLKLSVGGGMAVQQAVAERWVKLTGQYLLEGYGLTECS  363 (560)
T ss_pred             --------------------------CcccCCc--------cceeEEEecCccCCHHHHHHHHHHhCCcEEeeecccccC
Confidence                                      0111122        289999999999999999999998899999999999998


Q ss_pred             cceecccCCCCccCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhhccCccccCCe-
Q 010455          422 SGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGKN-  500 (510)
Q Consensus       422 ~~~~~~~~~~~~~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDl-  500 (510)
                      ..++....+.....+++|.|+|+++++|+| +++.+++.|  +.|||+++|+.++.||+++++.+.+.|.+|||+|||+ 
T Consensus       364 ~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~~~~~g--~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~  440 (560)
T PRK08974        364 PLVSVNPYDLDYYSGSIGLPVPSTEIKLVD-DDGNEVPPG--EPGELWVKGPQVMLGYWQRPEATDEVIKDGWLATGDIA  440 (560)
T ss_pred             ceeeccCCCCcccCCccccCcCCCEEEEEC-CCCCCCCCC--CceEEEEecCCcchhhcCChhhhhhhhhcCCcccCCEE
Confidence            876655444334457899999999999999 788777666  8999999999999999999999988888999999999 


Q ss_pred             eeccCCccC
Q 010455          501 PWQYTFKKL  509 (510)
Q Consensus       501 ~~d~dG~~~  509 (510)
                      ++|++|++.
T Consensus       441 ~~~~~g~l~  449 (560)
T PRK08974        441 VMDEEGFLR  449 (560)
T ss_pred             EEcCCceEE
Confidence            999998754

>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1

Probab=100.00  E-value=2.3e-48  Score=404.87  Aligned_cols=373  Identities=18%  Similarity=0.222  Sum_probs=304.2

Q ss_pred             CHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHHH
Q 010455           44 SPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACN  123 (510)
Q Consensus        44 sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA~~  123 (510)
                      ++.+.|.+.++.+|+++|+...   +      ..+||+||.+++.++|..|.+.|+++|++|+++++|+.++++++|||+
T Consensus         1 ~~~~~l~~~a~~~p~~~a~~~~---~------~~~ty~el~~~~~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~   71 (502)
T TIGR01734         1 KLIEAIQAFAETYPQTIAYRYQ---G------QELTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSI   71 (502)
T ss_pred             CHHHHHHHHHHHCCCceEEEcC---C------cEEeHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeCCCHHHHHHHHHHH
Confidence            5789999999999999998754   3      579999999999999999999999999999999999999999999999


Q ss_pred             hcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCceeeeHHH
Q 010455          124 SQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEE  203 (510)
Q Consensus       124 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (510)
                      ++|++++|+++.++.+++..+++..+++.++++.+......        ... ++.+..                  .+.
T Consensus        72 ~~G~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~--------~~~-~~~~~~------------------~~~  124 (502)
T TIGR01734        72 KSGHAYIPVDTSIPSERIEMIIEAAGPELVIHTAELSIDAV--------GTQ-IITLSA------------------LEQ  124 (502)
T ss_pred             HhCCEEeCCCCcChHHHHHHHHHhcCCCEEEeccccccccc--------CCc-eEEchH------------------hhh
Confidence            99999999999999999999999999999999876543221        111 111111                  111


Q ss_pred             HHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHH
Q 010455          204 FLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII  283 (510)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~  283 (510)
                      +..............++++++++|||||||.||+|.++|+++...+.+....+     ....+|+++..+|++|..++..
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~~~~~~~~  199 (502)
T TIGR01734       125 AETSGGPVSFDHAVKGDDNYYIIYTSGSTGNPKGVQISHDNLVSFTNWMLADF-----PLSEGKQFLNQAPFSFDLSVMD  199 (502)
T ss_pred             hhhhcCCccccccCCCCCeEEEEECCCCCCCCCEEEEecHHHHHHHHHHHHhC-----CCCCCceEEeecCceechhHHH
Confidence            11111111111234578899999999999999999999999999988876666     7788999999999999999888


Q ss_pred             HHHHHhcCcEEEEeCC----CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhcccC
Q 010455          284 ETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKG  359 (510)
Q Consensus       284 ~l~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (510)
                      ++.+++.|+++++.+.    ++..+++.+.+++++.+.++|.++..++...                             
T Consensus       200 ~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~p~~~~~~l~~~-----------------------------  250 (502)
T TIGR01734       200 LYPCLASGGTLHCLDKDITNNFKLLFEELPKTGLNVWVSTPSFVDMCLLDP-----------------------------  250 (502)
T ss_pred             HHHHHHCCCEEEEcCHHHhcCHHHHHHHHHHcCCeEEEEChhHHHHHHhcc-----------------------------
Confidence            8899999999998763    7899999999999999999999998765310                             


Q ss_pred             CCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhc-CCCeeeeccccccccceecccCC----CCcc
Q 010455          360 MPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESCSGCFTSLAD----VFNM  434 (510)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~-g~~l~~~yG~tE~~~~~~~~~~~----~~~~  434 (510)
                              .....++        ++++.++++|++++.++.+++.+.+ ++.+++.||+||++..++.....    ....
T Consensus       251 --------~~~~~~~--------~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~  314 (502)
T TIGR01734       251 --------NFNQENY--------PHLTHFLFCGEELPVKTAKALLERFPKATIYNTYGPTEATVAVTSVKITQEILDQYP  314 (502)
T ss_pred             --------ccccccC--------CcccEEEEcCCcCCHHHHHHHHHHCCCcEEEeCccCCcceEEEEEEEccccccccCC
Confidence                    0111111        3889999999999999999998887 78999999999987654432211    1222


Q ss_pred             CCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhh--cc--CccccCCe-eeccC
Q 010455          435 IGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI--VD--GWFHTGKN-PWQYT  505 (510)
Q Consensus       435 ~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~--~~--gw~~TGDl-~~d~d  505 (510)
                      ..++|.|.++++++|+| +++..++.+  +.|||+|+|+.++.||+++++.+.+.|  .+  +||+|||+ ++|++
T Consensus       315 ~~~vg~~~~~~~~~i~~-~~~~~~~~g--~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~TGDlg~~~~~  387 (502)
T TIGR01734       315 RLPIGFAKPDMNLFIMD-EEGEPLPEG--EKGEIVIVGPSVSKGYLNNPEKTAEAFFSHEGQPAYRTGDAGTITDG  387 (502)
T ss_pred             ccccccccCCCEEEEEC-CCCCCCCCC--CeeEEEEccccccccccCCcccchHhheeCCCcEEEECCCEEEEECC
Confidence            35799999999999999 888777766  899999999999999999999998887  23  59999999 99976

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=1.7e-48  Score=486.07  Aligned_cols=380  Identities=20%  Similarity=0.237  Sum_probs=315.0

Q ss_pred             CCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHH
Q 010455           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (510)
Q Consensus        42 ~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA  121 (510)
                      ..++.++|+++++++|+++|+++.   +      +.+||+||.++++++|+.|++.|+++|++|+++++|++++++++||
T Consensus      2002 ~~~~~~~~~~~a~~~p~~~A~~~~---~------~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~~~~~lA 2072 (5163)
T PRK12316       2002 GPGVHQRIAEQAARAPEAIAVVFG---D------QHLSYAELDSRANRLAHRLRARGVGPEVRVAIAAERSFELVVALLA 2072 (5163)
T ss_pred             CCCHHHHHHHHHHhCCCCeEEEcC---C------CeEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence            458999999999999999999875   4      4799999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCceeeeH
Q 010455          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW  201 (510)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  201 (510)
                      |+++|++++||+|.++.+++.++++.+++++++++......+...     .... .+.+...                  
T Consensus      2073 il~aGa~~vpld~~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~-----~~~~-~~~~~~~------------------ 2128 (5163)
T PRK12316       2073 VLKAGGAYVPLDPNYPAERLAYMLEDSGAALLLTQRHLLERLPLP-----AGVA-RLPLDRD------------------ 2128 (5163)
T ss_pred             HHhhceEEeecCCCCCHHHHHHHHHhcCCCEEEeChhhhhhcccc-----cccc-eEeccch------------------
Confidence            999999999999999999999999999999999987655432110     0111 1111110                  


Q ss_pred             HHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHH
Q 010455          202 EEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ  281 (510)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~  281 (510)
                      ..+ .............++++++|+|||||||.||||+++|+++.+.+.+....+     +++++|+++.+.|++|..++
T Consensus      2129 ~~~-~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~~fd~~~ 2202 (5163)
T PRK12316       2129 AEW-ADYPDTAPAVQLAGENLAYVIYTSGSTGLPKGVAVSHGALVAHCQAAGERY-----ELSPADCELQFMSFSFDGAH 2202 (5163)
T ss_pred             hhh-hccCccCCCCCCCCCCeEEEEeCccCCCCCCEeEEccHHHHHHHHHHHHhc-----CCCCcceEEEecCchHHHHH
Confidence            000 001111122345789999999999999999999999999999999988877     88899999999999999888


Q ss_pred             HHHHHHHhcCcEEEEeCC---CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhccc
Q 010455          282 IIETHCIHKGCSIGFWRG---DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKK  358 (510)
Q Consensus       282 ~~~l~~l~~G~~~v~~~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (510)
                      ..++.+|+.|+++++.+.   ++..+++.++++++|++.++|++++.+.......                         
T Consensus      2203 ~~~~~~L~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~------------------------- 2257 (5163)
T PRK12316       2203 EQWFHPLLNGARVLIRDDELWDPEQLYDEMERHGVTILDFPPVYLQQLAEHAERD------------------------- 2257 (5163)
T ss_pred             HHHHHHHhCCCEEEeCCcccCCHHHHHHHHHHcCCeEEEcChHHHHHHHhhhhcc-------------------------
Confidence            889999999999977653   7899999999999999999999999986521100                         


Q ss_pred             CCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhc-CCCeeeeccccccccceecccCCCCc----
Q 010455          359 GMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESCSGCFTSLADVFN----  433 (510)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~-g~~l~~~yG~tE~~~~~~~~~~~~~~----  433 (510)
                                  .         ...+||.+++||+++++++.+.|.+.+ +..+++.||+||++..++........    
T Consensus      2258 ------------~---------~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~ 2316 (5163)
T PRK12316       2258 ------------G---------RPPAVRVYCFGGEAVPAASLRLAWEALRPVYLFNGYGPTEAVVTPLLWKCRPQDPCGA 2316 (5163)
T ss_pred             ------------c---------CCcceeEEEEecccCCHHHHHHHHHhCCCcEEEECccchhheeeeeeeecccccccCC
Confidence                        0         002799999999999999999988765 67899999999998776654332211    


Q ss_pred             cCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhh-c-------cCccccCCe-eecc
Q 010455          434 MIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-V-------DGWFHTGKN-PWQY  504 (510)
Q Consensus       434 ~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~-------~gw~~TGDl-~~d~  504 (510)
                      ...++|+|++|++++|+| +++++++.|  +.|||+|+|+++++||+|+|+.|.++| .       ++||+|||+ ++++
T Consensus      2317 ~~~~iG~p~~~~~~~i~d-~~~~~vp~g--~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~~~~~~~~~~yrTGDl~~~~~ 2393 (5163)
T PRK12316       2317 AYVPIGRALGNRRAYILD-ADLNLLAPG--MAGELYLGGEGLARGYLNRPGLTAERFVPDPFSASGERLYRTGDLARYRA 2393 (5163)
T ss_pred             CcCCcccccCCCEEEEEC-CCCCCCCCC--CeeEEEecchhhcccccCChhhhhhhccCCCCCCCCCeeEecccEEEEcC
Confidence            125799999999999999 888888776  899999999999999999999999998 2       259999999 9999


Q ss_pred             CCccC
Q 010455          505 TFKKL  509 (510)
Q Consensus       505 dG~~~  509 (510)
                      ||.+.
T Consensus      2394 dG~l~ 2398 (5163)
T PRK12316       2394 DGVVE 2398 (5163)
T ss_pred             CCcEE
Confidence            99763

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=3.7e-48  Score=475.87  Aligned_cols=381  Identities=19%  Similarity=0.246  Sum_probs=317.1

Q ss_pred             CCCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHH
Q 010455           41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME  120 (510)
Q Consensus        41 ~~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~l  120 (510)
                      ...++.++|+++++++|+++|+++.   +      +.+||+||.++++++|+.|++.|+++|++|+++++|++++++++|
T Consensus       510 ~~~~~~~~~~~~a~~~pd~~Al~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~l  580 (3956)
T PRK12467        510 APDCVHQLIEAQARQHPERPALVFG---E------QVLSYAELNRQANRLAHVLIAAGVGPDVLVGIAVERSIEMVVGLL  580 (3956)
T ss_pred             CCCCHHHHHHHHHHHCCCCeEEEeC---C------ceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence            4578999999999999999999875   4      579999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCceeee
Q 010455          121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFS  200 (510)
Q Consensus       121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  200 (510)
                      ||+++|++++|++|.++.+++.++++.++++++|++......+..     .... .++.+....                
T Consensus       581 ail~aG~~~vpld~~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~-----~~~~-~~~~~~~~~----------------  638 (3956)
T PRK12467        581 AVLKAGGAYVPLDPEYPQDRLAYMLDDSGVRLLLTQSHLLAQLPV-----PAGL-RSLCLDEPA----------------  638 (3956)
T ss_pred             HHHHhCcEEeccCCCChHHHHHHHHHhcCCCEEEechhhhhhccc-----ccCc-cEEEecccc----------------
Confidence            999999999999999999999999999999999998754332210     0111 122222110                


Q ss_pred             HHHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHH
Q 010455          201 WEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD  280 (510)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g  280 (510)
                        ................++++++++|||||||.||||+++|+++.+.+.+....+     ++..+|+++...|++|..+
T Consensus       639 --~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~~fd~~  711 (3956)
T PRK12467        639 --DLLCGYSGHNPEVALDPDNLAYVIYTSGSTGQPKGVAISHGALANYVCVIAERL-----QLAADDSMLMVSTFAFDLG  711 (3956)
T ss_pred             --ccccccCCCCCCCCCCCCCeEEEEECCCCCCCcCEEEEecHHHHHHHHHHHHhc-----CCCCCCEEEEecCccHhHH
Confidence              001111111122345689999999999999999999999999999999988777     7889999999999999999


Q ss_pred             HHHHHHHHhcCcEEEEeCC----CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhc
Q 010455          281 QIIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNM  356 (510)
Q Consensus       281 ~~~~l~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (510)
                      ...++.+|+.|+++++.+.    ++..+++.|+++++|++.++|+++..+++.....                       
T Consensus       712 ~~~~~~~L~~G~~lv~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~-----------------------  768 (3956)
T PRK12467        712 VTELFGALASGATLHLLPPDCARDAEAFAALMADQGVTVLKIVPSHLQALLQASRVA-----------------------  768 (3956)
T ss_pred             HHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEEcCHHHHHHHHhhhccc-----------------------
Confidence            9889999999999999763    8999999999999999999999999986521100                       


Q ss_pred             ccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhc-CCCeeeeccccccccceecccCCCCc--
Q 010455          357 KKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESCSGCFTSLADVFN--  433 (510)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~-g~~l~~~yG~tE~~~~~~~~~~~~~~--  433 (510)
                                      .+        .++|.+++||+++++++.+.+.+.+ +++++|.||+||++..++........  
T Consensus       769 ----------------~~--------~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~  824 (3956)
T PRK12467        769 ----------------LP--------RPQRALVCGGEALQVDLLARVRALGPGARLINHYGPTETTVGVSTYELSDEERD  824 (3956)
T ss_pred             ----------------cC--------CcccEEEEEeecCCHHHHHHHHHhCCCCEEEeCcCCChhhhheeeEeccccccc
Confidence                            00        2679999999999999999998876 68999999999998876654432211  


Q ss_pred             -cCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhh-cc-------CccccCCe-eec
Q 010455          434 -MIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VD-------GWFHTGKN-PWQ  503 (510)
Q Consensus       434 -~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~-------gw~~TGDl-~~d  503 (510)
                       ...++|+|+++++++|+| +++++++.|  +.|||+|+|++++.||+|+|+.|.+.| .+       +||+|||+ +++
T Consensus       825 ~~~~~iG~p~~~~~~~i~d-~~~~~vp~G--~~GEL~i~G~~v~~GYl~~p~~T~~~F~~~p~~~~g~r~yrTGDl~~~~  901 (3956)
T PRK12467        825 FGNVPIGQPLANLGLYILD-HYLNPVPVG--VVGELYIGGAGLARGYHRRPALTAERFVPDPFGADGGRLYRTGDLARYR  901 (3956)
T ss_pred             CCCCcccCCcCCCEEEEEC-CCCCCCCCC--CceEEEecccccchhhcCCccccHhhCcCCCCCCCCceeEecCceeEEc
Confidence             125799999999999999 888888777  899999999999999999999999998 22       39999999 999


Q ss_pred             cCCccC
Q 010455          504 YTFKKL  509 (510)
Q Consensus       504 ~dG~~~  509 (510)
                      +||.+.
T Consensus       902 ~dG~l~  907 (3956)
T PRK12467        902 ADGVIE  907 (3956)
T ss_pred             CCCcEE
Confidence            999763

>PRK07867 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.9e-47  Score=397.97  Aligned_cols=377  Identities=18%  Similarity=0.226  Sum_probs=299.0

Q ss_pred             CCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhC-CCCCCCEEEEEcCCchhHHHHHH
Q 010455           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSR-GVNPGDRCGIYGSNCPEWIIAME  120 (510)
Q Consensus        42 ~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~-gv~~gd~Vai~~~ns~~~~~~~l  120 (510)
                      ..++.++|.+++.  ++++++++.   +      +.+||.||.++++++|.+|++. |+++|++|+++++|+++++++++
T Consensus         4 ~~~~~~~l~~~a~--~~~~a~~~~---~------~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~V~i~~~n~~~~~~~~l   72 (529)
T PRK07867          4 APTVAELLLPLAE--DDDRGLYFE---D------SFTSWREHIRGSAARAAALRARLDPTRPPHVGVLLDNTPEFSLLLG   72 (529)
T ss_pred             cccHHHHHHHhcc--cCCceEEEC---C------cEEeHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHHH
Confidence            4678999988875  788998764   3      5799999999999999999997 89999999999999999999999


Q ss_pred             HHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCceeee
Q 010455          121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFS  200 (510)
Q Consensus       121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  200 (510)
                      ||+++|++++|+++..+.+++..+++.++++++|+++.....+.+..    ..+ .++....                ..
T Consensus        73 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~----~~~-~~~~~~~----------------~~  131 (529)
T PRK07867         73 AAALSGIVPVGLNPTRRGAALARDIAHADCQLVLTESAHAELLDGLD----PGV-RVINVDS----------------PA  131 (529)
T ss_pred             HHHhcCCEEEEecCCCChHHHHHHHHhCCCeEEEECHhHHHHHHhhc----cCc-eEEEecc----------------cc
Confidence            99999999999999999999999999999999999987766443321    111 1122111                01


Q ss_pred             HHHHHHcC-CCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHH
Q 010455          201 WEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIY  279 (510)
Q Consensus       201 ~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~  279 (510)
                      +.+++... ..........++++++++|||||||.||+|+++|+++......+...+     ++..+|+++..+|++|..
T Consensus       132 ~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~~~~  206 (529)
T PRK07867        132 WADELAAHRDAEPPFRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLAQRF-----GLGPDDVCYVSMPLFHSN  206 (529)
T ss_pred             HHHHhcccCCCCCCcccCCccceEEEEECCCCCCCCcEEEecHHHHHHHHHHHHHhh-----CCCcccEEEEecchhHHH
Confidence            33333221 111222345678999999999999999999999999998888877776     778899999999999999


Q ss_pred             HHHH-HHHHHhcCcEEEEeCC-CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhcc
Q 010455          280 DQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMK  357 (510)
Q Consensus       280 g~~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (510)
                      ++.. ++.++..|+++++.+. ++..+++.++++++|++.++|..+..++....                          
T Consensus       207 ~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~ll~~~~--------------------------  260 (529)
T PRK07867        207 AVMAGWAVALAAGASIALRRKFSASGFLPDVRRYGATYANYVGKPLSYVLATPE--------------------------  260 (529)
T ss_pred             HHHHHHHHHHhcCceEEecCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCC--------------------------
Confidence            9875 5568999999988764 89999999999999999999999988754110                          


Q ss_pred             cCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeeccccccccceecccCCCCccCCc
Q 010455          358 KGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGT  437 (510)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~~~~~~~~~~~~~~s  437 (510)
                              ..  +. ..        .++|. ++||+.++... +.+.+.+|+++++.||+||++..+.....   ...++
T Consensus       261 --------~~--~~-~~--------~~lr~-~~gg~~~~~~~-~~~~~~~g~~l~~~YG~TE~~~~~~~~~~---~~~~~  316 (529)
T PRK07867        261 --------RP--DD-AD--------NPLRI-VYGNEGAPGDI-ARFARRFGCVVVDGFGSTEGGVAITRTPD---TPPGA  316 (529)
T ss_pred             --------cc--cc-cc--------cceEE-EecCCCChHHH-HHHHHHhCCcEEEeecccccccccccCCC---CCCCC
Confidence                    00  00 00        26774 56888887765 55666679999999999999865543221   23378


Q ss_pred             cccccCCeEEEEeecCCCCcCCCCCCC------------cceEEE-ecCCccccccCCchhhhhhhccCccccCCe-eec
Q 010455          438 VGVPMTTVEARLESVPEMGYDALSSVP------------RGEICL-RGNTLFSGYYKRPDLTEEVIVDGWFHTGKN-PWQ  503 (510)
Q Consensus       438 vG~p~~g~~i~ivd~~~~~~~~~~~~~------------~Gei~v-~g~~v~~gY~~~~~~~~~~~~~gw~~TGDl-~~d  503 (510)
                      +|.|+++  ++|+|.+++.+++.+  +            .|||++ +|++++.||+++++.+.+.|.+|||+|||+ ++|
T Consensus       317 ~g~~~~~--~~i~~~~~~~~~~~g--~~~~~~~~~~~~~~Gel~i~~g~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~  392 (529)
T PRK07867        317 LGPLPPG--VAIVDPDTGTECPPA--EDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEADAERMRGGVYWSGDLAYRD  392 (529)
T ss_pred             cCCCCCC--EEEEECCCCCCCCCC--ccccccccccCCcceEEEEecCCcccccccCChHhhhhhhcCCeEeeccEEEEe
Confidence            9999999  677773455555554  5            899999 999999999999999999899999999999 999


Q ss_pred             cCCccC
Q 010455          504 YTFKKL  509 (510)
Q Consensus       504 ~dG~~~  509 (510)
                      +||++.
T Consensus       393 ~~g~l~  398 (529)
T PRK07867        393 ADGYAY  398 (529)
T ss_pred             CCCcEE
Confidence            999864

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=4e-48  Score=482.68  Aligned_cols=380  Identities=19%  Similarity=0.218  Sum_probs=316.4

Q ss_pred             CCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHH
Q 010455           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (510)
Q Consensus        42 ~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA  121 (510)
                      ..++.++|+++++++|+++|+.+.   +      ..+||+||.++++++|+.|++.|+++|++|+++++|++++++++||
T Consensus       510 ~~~~~~~~~~~a~~~p~~~A~~~~---~------~~~TY~eL~~~~~~lA~~L~~~gv~~g~~V~l~~~~s~~~i~~~la  580 (5163)
T PRK12316        510 QRGVHRLFEEQVERTPEAPALAFG---E------ETLDYAELNRRANRLAHALIERGVGPDVLVGVAMERSIEMVVALLA  580 (5163)
T ss_pred             CCCHHHHHHHHHHHCCCCeEEEeC---C------ceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence            468999999999999999999865   4      5799999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCceeeeH
Q 010455          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW  201 (510)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  201 (510)
                      |+++|++++|++|.++.+++.++++.++++++|++......+..      .....++.++...                 
T Consensus       581 ~~~aG~~~vpld~~~p~~rl~~il~~~~~~~~l~~~~~~~~~~~------~~~~~~~~~~~~~-----------------  637 (5163)
T PRK12316        581 ILKAGGAYVPLDPEYPAERLAYMLEDSGVQLLLSQSHLGRKLPL------AAGVQVLDLDRPA-----------------  637 (5163)
T ss_pred             HHHcCCEEeccCccCcHHHHHHHHHhCCCCEEEEChhhhhhCCc------ccCceEEEecCcc-----------------
Confidence            99999999999999999999999999999999998765432211      0011222222111                 


Q ss_pred             HHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHH
Q 010455          202 EEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ  281 (510)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~  281 (510)
                       ................++++++++|||||||.||||+++|+++.+.+.+....+     ++..+|+++..+|++|..++
T Consensus       638 -~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~fd~~~  711 (5163)
T PRK12316        638 -AWLEGYSEENPGTELNPENLAYVIYTSGSTGKPKGAGNRHRALSNRLCWMQQAY-----GLGVGDTVLQKTPFSFDVSV  711 (5163)
T ss_pred             -hhhccCCCCCCCCCCCCCCeEEEEECCCcCCCCCEeeEcCHHHHHHHHHHHHhc-----CCCCCCEEEeeCCeehHHHH
Confidence             011111111222345678999999999999999999999999999999988887     88899999999999999999


Q ss_pred             HHHHHHHhcCcEEEEeC----CCHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhcc
Q 010455          282 IIETHCIHKGCSIGFWR----GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMK  357 (510)
Q Consensus       282 ~~~l~~l~~G~~~v~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (510)
                      ..++.+|+.|+++++.+    .++..+++.++++++|++.++|++++.+++..                           
T Consensus       712 ~~~~~~L~~G~~l~i~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~---------------------------  764 (5163)
T PRK12316        712 WEFFWPLMSGARLVVAAPGDHRDPAKLVELINREGVDTLHFVPSMLQAFLQDE---------------------------  764 (5163)
T ss_pred             HHHHHHHhCCCEEEECCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcc---------------------------
Confidence            88999999999999975    28999999999999999999999999886410                           


Q ss_pred             cCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhc-CCCeeeeccccccccceecccC-CCCccC
Q 010455          358 KGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESCSGCFTSLA-DVFNMI  435 (510)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~-g~~l~~~yG~tE~~~~~~~~~~-~~~~~~  435 (510)
                                ...  ++        ++||.+++||+++++++.+.+.+.+ +++++|.||+||++..++.... ......
T Consensus       765 ----------~~~--~~--------~~l~~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~  824 (5163)
T PRK12316        765 ----------DVA--SC--------TSLRRIVCSGEALPADAQEQVFAKLPQAGLYNLYGPTEAAIDVTHWTCVEEGGDS  824 (5163)
T ss_pred             ----------ccc--cC--------CCccEEEEeeccCCHHHHHHHHHhCCCCeEEeCcCcChheeeeeEEecccccCCC
Confidence                      000  11        2899999999999999999886655 7889999999999865544332 222334


Q ss_pred             CccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhh-c------cCccccCCe-eeccCCc
Q 010455          436 GTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-V------DGWFHTGKN-PWQYTFK  507 (510)
Q Consensus       436 ~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~------~gw~~TGDl-~~d~dG~  507 (510)
                      .++|+|++|++++|+| +++++++.|  +.|||+|+|++++.||+|+|+.|.++| .      ++||+|||+ ++|+||.
T Consensus       825 ~~iG~p~~~~~~~i~d-~~~~~~p~G--~~GEl~i~G~~v~~GYl~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~dG~  901 (5163)
T PRK12316        825 VPIGRPIANLACYILD-ANLEPVPVG--VLGELYLAGRGLARGYHGRPGLTAERFVPSPFVAGERMYRTGDLARYRADGV  901 (5163)
T ss_pred             CCCccccCCCEEEEEC-CCCCCCCCC--CceEEEecccccChhhCCChhhhhhhCCCCCCCCCCeeEecCccEEECCCCC
Confidence            6899999999999999 888887776  899999999999999999999999988 2      349999999 9999998


Q ss_pred             cC
Q 010455          508 KL  509 (510)
Q Consensus       508 ~~  509 (510)
                      +.
T Consensus       902 l~  903 (5163)
T PRK12316        902 IE  903 (5163)
T ss_pred             EE
Confidence            64

>PRK13390 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.2e-47  Score=397.27  Aligned_cols=381  Identities=18%  Similarity=0.207  Sum_probs=292.4

Q ss_pred             HHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHHHhcCCeEE
Q 010455           51 DSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYV  130 (510)
Q Consensus        51 ~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA~~~~G~~~v  130 (510)
                      .+++++|+++|+.+.   ++.    ..+||+||.++++++|+.|.+.|+++||+|+++++|++++++++|||+++|++++
T Consensus         5 ~~a~~~p~~~a~~~~---~~~----~~lTy~el~~~~~~la~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~Ga~~~   77 (501)
T PRK13390          5 THAQIAPDRPAVIVA---ETG----EQVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVVLWAALRSGLYIT   77 (501)
T ss_pred             hhhhhCCCCcEEEec---CCC----eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEe
Confidence            567789999999764   322    5799999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCceeeeHHHHHHcCCC
Q 010455          131 PLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTL  210 (510)
Q Consensus       131 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (510)
                      ++++.++++++.++++.++++.+++++......... ..   .....+.+.....           ....+++...... 
T Consensus        78 ~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~---~~~~~~~~~~~~~-----------~~~~~~~~~~~~~-  141 (501)
T PRK13390         78 AINHHLTAPEADYIVGDSGARVLVASAALDGLAAKV-GA---DLPLRLSFGGEID-----------GFGSFEAALAGAG-  141 (501)
T ss_pred             ccccCCCHHHHHHHHHhcCCcEEEEcchhhhHHHHh-hh---ccceEEEecCccc-----------ccccHHHHhcccC-
Confidence            999999999999999999999999987543322211 11   1111122211100           0122333322110 


Q ss_pred             CCCCCCCCCCCeEEEEecCCCCCCCceEEe--ecHHHHHHHhh----hhhhhhhccccCCCCcEEEEecChHHHHHHHHH
Q 010455          211 DCELPPKKKTNISTIMYTSGTTGEPKGVVL--TNQAIVAEVLS----VDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIE  284 (510)
Q Consensus       211 ~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~--sh~~l~~~~~~----~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~  284 (510)
                         ......++.++++|||||||.||+|++  +|.++......    ....+     .+..+|++++.+|++|.+++...
T Consensus       142 ---~~~~~~~~~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~~h~~~~~~~  213 (501)
T PRK13390        142 ---PRLTEQPCGAVMLYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAFY-----DISESDIYYSSAPIYHAAPLRWC  213 (501)
T ss_pred             ---CCCCCCcccEEEEeCCCCCCCCCEEEeeccccccccchhhhHhhHHHHh-----CCCCCCeEEecccchhhhHHHHH
Confidence               011123357999999999999999996  45555432211    11223     67789999999999999988665


Q ss_pred             HHHHhcCcEEEEeCC-CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhcccCCCCC
Q 010455          285 THCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQN  363 (510)
Q Consensus       285 l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (510)
                      +..+..|+++++.+. ++..+++.++++++|++.++|+++..+......                               
T Consensus       214 ~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-------------------------------  262 (501)
T PRK13390        214 SMVHALGGTVVLAKRFDAQATLGHVERYRITVTQMVPTMFVRLLKLDAD-------------------------------  262 (501)
T ss_pred             HHHHhcCceEEEcCCcCHHHHHHHHHHcCCeEEEecHHHHHHHHhccch-------------------------------
Confidence            556778999988765 899999999999999999999999888641100                               


Q ss_pred             CchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeeccccccccceecccCCCCccCCccccccC
Q 010455          364 KAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMT  443 (510)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~~~~~~~~~~~~~~svG~p~~  443 (510)
                          ..+..+++        ++|.+++||++++.++.+.+++.+|..+++.||+||++.++...........+++|+|++
T Consensus       263 ----~~~~~~~~--------~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~  330 (501)
T PRK13390        263 ----VRTRYDVS--------SLRAVIHAAAPCPVDVKHAMIDWLGPIVYEYYSSTEAHGMTFIDSPDWLAHPGSVGRSVL  330 (501)
T ss_pred             ----hcccCChh--------hhheEEEcCCCCCHHHHHHHHHhcCCceeeeecccccCceEEecchhhccCCCCcCCccc
Confidence                00111222        789999999999999999999988999999999999987655433222233478999999


Q ss_pred             CeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhh-c--cCccccCCe-eeccCCccC
Q 010455          444 TVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-V--DGWFHTGKN-PWQYTFKKL  509 (510)
Q Consensus       444 g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~--~gw~~TGDl-~~d~dG~~~  509 (510)
                      + +++|+| +++.+++.|  +.|||+|+|++++.||+++|+.+.+.| .  +||++|||+ ++|+||++.
T Consensus       331 g-~~~i~d-~~~~~~~~g--~~Gel~v~~~~~~~gy~~~~~~t~~~~~~~~~~w~~tGDl~~~~~dg~l~  396 (501)
T PRK13390        331 G-DLHICD-DDGNELPAG--RIGTVYFERDRLPFRYLNDPEKTAAAQHPAHPFWTTVGDLGSVDEDGYLY  396 (501)
T ss_pred             c-eEEEEC-CCCCCCCCC--CceEEEEecCCccccccCChhhhHHhhccCCCceEEcCceEEECCCCeEE
Confidence            9 799999 888777665  899999999999999999999998887 2  689999999 999999764

>PRK07787 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.2e-47  Score=393.84  Aligned_cols=354  Identities=24%  Similarity=0.320  Sum_probs=290.0

Q ss_pred             HhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHHHhcCCeEEEe
Q 010455           53 AKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPL  132 (510)
Q Consensus        53 a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA~~~~G~~~v~l  132 (510)
                      ++..++++|+++.   +      +.+||+||.++++++|..|.     ++|+|+++++|+++++++++||+++|++++|+
T Consensus        10 ~~~~~~~~a~~~~---~------~~~Ty~el~~~~~~~a~~L~-----~~~~V~l~~~~~~~~~~~~la~~~~G~~~v~l   75 (471)
T PRK07787         10 AAAADIADAVRIG---G------RVLSRSDLAGAATAVAERVA-----GARRVAVLATPTLATVLAVVGALIAGVPVVPV   75 (471)
T ss_pred             hcccCCceEEEeC---C------cEEEHHHHHHHHHHHHHHhc-----cCCEEEEECCCCHHHHHHHHHHHhcCcEEeec
Confidence            3456788888765   3      68999999999999999995     57999999999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCceeeeHHHHHHcCCCCC
Q 010455          133 YDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDC  212 (510)
Q Consensus       133 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (510)
                      ++..+.+++..+++.++++.++++.+...          ..+.........               ..+          .
T Consensus        76 ~~~~~~~~l~~~l~~~~~~~il~~~~~~~----------~~~~~~~~~~~~---------------~~~----------~  120 (471)
T PRK07787         76 PPDSGVAERRHILADSGAQAWLGPAPDDP----------AGLPHVPVRLHA---------------RSW----------H  120 (471)
T ss_pred             CCCCChHHHHHHHHhcCCCEEEecCCccc----------ccccceeeeccc---------------ccc----------c
Confidence            99999999999999999999999763110          001110000000               000          0


Q ss_pred             CCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHH-HHHHHhcC
Q 010455          213 ELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKG  291 (510)
Q Consensus       213 ~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~-~l~~l~~G  291 (510)
                      ......++++++++|||||||.||+|.++|+++...+......+     .+..+|++++.+|++|..|+.. ++.+++.|
T Consensus       121 ~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G  195 (471)
T PRK07787        121 RYPEPDPDAPALIVYTSGTTGPPKGVVLSRRAIAADLDALAEAW-----QWTADDVLVHGLPLFHVHGLVLGVLGPLRIG  195 (471)
T ss_pred             cCCCCCCCceEEEEECCCCCCCCCEEEEeHHHHHHHHHHHHHhc-----CCCccceeEeccCCeeechhHHHHHHHHhcC
Confidence            11123568999999999999999999999999999988877777     7788999999999999999875 77899999


Q ss_pred             cEEEEeCC-CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhcccCCCCCCchhhHH
Q 010455          292 CSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLD  370 (510)
Q Consensus       292 ~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (510)
                      +++++.+. ++..+++.++ +++|++.++|.++..+++...                                     . 
T Consensus       196 ~~~~~~~~~~~~~~~~~i~-~~~t~~~~~P~~~~~l~~~~~-------------------------------------~-  236 (471)
T PRK07787        196 NRFVHTGRPTPEAYAQALS-EGGTLYFGVPTVWSRIAADPE-------------------------------------A-  236 (471)
T ss_pred             CEEEecCCCCHHHHHHHHh-hCceEEEcchHHHHHHHhCcc-------------------------------------c-
Confidence            99998764 8999999999 999999999999988864100                                     0 


Q ss_pred             HHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeeccccccccceecccCCCCccCCccccccCCeEEEEe
Q 010455          371 SLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLE  450 (510)
Q Consensus       371 ~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~~~~~~~~~~~~~~svG~p~~g~~i~iv  450 (510)
                      ...+        .++|.+++||+++++++.+++.+.++..+++.||+||++..++.... ....++++|+|++|++++|+
T Consensus       237 ~~~l--------~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~-~~~~~~~vG~~~~g~~~~i~  307 (471)
T PRK07787        237 ARAL--------RGARLLVSGSAALPVPVFDRLAALTGHRPVERYGMTETLITLSTRAD-GERRPGWVGLPLAGVETRLV  307 (471)
T ss_pred             cccc--------cceeEEEECCCCCCHHHHHHHHHHcCCCeecccCccccCcceecCCC-CcccCCcccccCCCcEEEEE
Confidence            0011        28999999999999999999999889999999999999865444332 23334789999999999999


Q ss_pred             ecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhh-ccCccccCCe-eeccCCccC
Q 010455          451 SVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGKN-PWQYTFKKL  509 (510)
Q Consensus       451 d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~gw~~TGDl-~~d~dG~~~  509 (510)
                      | +++.+++...++.|||+++|++++.||+++++.+.+.| .+|||+|||+ ++|+||++.
T Consensus       308 d-~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~t~~~~~~~~~~~TGDlg~~~~dg~l~  367 (471)
T PRK07787        308 D-EDGGPVPHDGETVGELQVRGPTLFDGYLNRPDATAAAFTADGWFRTGDVAVVDPDGMHR  367 (471)
T ss_pred             C-CCCCCCCCCCCCceEEEEECcccchhhcCChhhchhcccCCCceecCceEEEcCCCCEE
Confidence            9 77877764322489999999999999999999999998 6899999999 999999864

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=7.2e-48  Score=477.28  Aligned_cols=382  Identities=18%  Similarity=0.182  Sum_probs=317.7

Q ss_pred             CCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHH
Q 010455           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (510)
Q Consensus        42 ~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA  121 (510)
                      ..++.++|+++++++|+++|+.+.   +      ..+||+||.++++++|+.|++.|+++|++|+|++++++++++++||
T Consensus      3719 ~~~~~~~~~~~~~~~p~~~Av~~~---~------~~~tY~eL~~~~~~la~~L~~~gv~~~~~V~v~~~~s~~~~v~~la 3789 (4334)
T PRK05691       3719 EQSYVRLFEAQVAAHPQRIAASCL---D------QQWSYAELNRAANRLGHALRAAGVGVDQPVALLAERGLDLLGMIVG 3789 (4334)
T ss_pred             ccCHHHHHHHHHHhCCCceEEEcC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence            468999999999999999999976   5      4699999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCC-CCccEEEEecCCChhhhhHhhhcCceeee
Q 010455          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCC-LYLKTIVSFANVSSSQKKEAEELGVSCFS  200 (510)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  200 (510)
                      ++++|+.++||+|.++.+++.++++.+++++++++............... .....++..++                  
T Consensus      3790 vlkaG~a~vpld~~~p~~r~~~il~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 3851 (4334)
T PRK05691       3790 SFKAGAGYLPLDPGLPAQRLQRIIELSRTPVLVCSAACREQARALLDELGCANRPRLLVWEE------------------ 3851 (4334)
T ss_pred             HHhhCcEEeCCCCCChHHHHHHHHHhcCCCEEEecCcccchhhhhhcccccccccceeeecc------------------
Confidence            99999999999999999999999999999999999876543322211110 01111211111                  


Q ss_pred             HHHHHHcC-CCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHH
Q 010455          201 WEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIY  279 (510)
Q Consensus       201 ~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~  279 (510)
                         ..... ..........+++++|++|||||||.||||+++|+++++.+.+....+     ++++.|+++...++.+..
T Consensus      3852 ---~~~~~~~~~~~~~~~~~~~~ayvi~TSGSTG~PKGV~~~h~~~~~~~~~~~~~~-----~~~~~~~~~~~~s~~fd~ 3923 (4334)
T PRK05691       3852 ---VQAGEVASHNPGIYSGPDNLAYVIYTSGSTGLPKGVMVEQRGMLNNQLSKVPYL-----ALSEADVIAQTASQSFDI 3923 (4334)
T ss_pred             ---cccccccccCCCCCCCCCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHHhc-----CCCccceEEEecCCchhH
Confidence               10000 111122345688999999999999999999999999999999988877     899999999999999999


Q ss_pred             HHHHHHHHHhcCcEEEEeCC----CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhh
Q 010455          280 DQIIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGN  355 (510)
Q Consensus       280 g~~~~l~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (510)
                      +...++.+|..|+++++.+.    ++..+++.++++++|++..+|+++..++.....                       
T Consensus      3924 s~~~~~~~l~~G~~l~i~~~~~~~~~~~l~~~~~~~~vt~~~~~Ps~~~~l~~~~~~----------------------- 3980 (4334)
T PRK05691       3924 SVWQFLAAPLFGARVEIVPNAIAHDPQGLLAHVQAQGITVLESVPSLIQGMLAEDRQ----------------------- 3980 (4334)
T ss_pred             HHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhccc-----------------------
Confidence            99889999999999998764    789999999999999999999999887641100                       


Q ss_pred             cccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhc-CCCeeeeccccccccceecccCCCC--
Q 010455          356 MKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESCSGCFTSLADVF--  432 (510)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~-g~~l~~~yG~tE~~~~~~~~~~~~~--  432 (510)
                                       .+        .+||.+++|||+++.++.+.|.+.+ ++.++|.||+||++..++.......  
T Consensus      3981 -----------------~~--------~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~~~~~~~~~~~ 4035 (4334)
T PRK05691       3981 -----------------AL--------DGLRWMLPTGEAMPPELARQWLQRYPQIGLVNAYGPAECSDDVAFFRVDLAST 4035 (4334)
T ss_pred             -----------------cC--------CCceEEEecCCcCCHHHHHHHHHhCCCCeEEeCccCccceeEEEEEEcccccc
Confidence                             01        2899999999999999999887664 7899999999999987765433221  


Q ss_pred             -ccCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhh-c-------cCccccCCe-ee
Q 010455          433 -NMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-V-------DGWFHTGKN-PW  502 (510)
Q Consensus       433 -~~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~-------~gw~~TGDl-~~  502 (510)
                       ....++|+|++++++.|+| +.++.+|.|  ..|||+|+|+++++||+|+|+.|+++| .       ++||+|||+ ++
T Consensus      4036 ~~~~~~iG~p~~~~~~~v~d-~~~~~~p~g--~~GEL~i~G~~v~~GY~~~~~~t~~~f~~~p~~~~~~~~yrTGDl~~~ 4112 (4334)
T PRK05691       4036 RGSYLPIGSPTDNNRLYLLD-EALELVPLG--AVGELCVAGTGVGRGYVGDPLRTALAFVPHPFGAPGERLYRTGDLARR 4112 (4334)
T ss_pred             cCCcCCCCCccCCCEEEEEC-CCCCCCCCC--CceEEEEecccccccccCCcccchhhcccCCCCCCCceeeccCcceee
Confidence             1224699999999999999 888888887  899999999999999999999999998 2       369999999 99


Q ss_pred             ccCCccC
Q 010455          503 QYTFKKL  509 (510)
Q Consensus       503 d~dG~~~  509 (510)
                      ++||.+.
T Consensus      4113 ~~dG~l~ 4119 (4334)
T PRK05691       4113 RSDGVLE 4119 (4334)
T ss_pred             cCCCcEE
Confidence            9999753

>PRK09192 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.3e-47  Score=405.27  Aligned_cols=395  Identities=19%  Similarity=0.232  Sum_probs=303.4

Q ss_pred             CCCCCCCCCCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCch
Q 010455           34 GLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCP  113 (510)
Q Consensus        34 ~~~~~~~~~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~  113 (510)
                      +++....+.+++.++|+..++.+|+..++ .     .+.+..+.+||.||..+++++|.+|++.|+++||+|+++++|++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~Ty~eL~~~~~~~a~~L~~~gi~~gd~V~l~~~n~~   85 (579)
T PRK09192         12 SLPRRYADFPTLVEALDYAALGEAGMNFY-D-----RRGQLEEALPYQTLRARAEAGARRLLALGLKPGDRVALIAETDG   85 (579)
T ss_pred             cccccccchhhHHHHHHHhhccCCceEEE-e-----cCCCEEEEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCch
Confidence            56666678899999999999988865443 2     22233478999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHhcCCeEEEecCCCC-------HHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChh
Q 010455          114 EWIIAMEACNSQAITYVPLYDTLG-------ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSS  186 (510)
Q Consensus       114 ~~~~~~lA~~~~G~~~v~l~~~~~-------~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  186 (510)
                      +++++++||+++|++++|+++..+       .+++..+++.++++++|+++...+.+.+.....    ..++        
T Consensus        86 ~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~~~~l~~~i~~~~~~~il~~~~~~~~~~~~~~~~----~~~~--------  153 (579)
T PRK09192         86 DFVEAFFACQYAGLVPVPLPLPMGFGGRESYIAQLRGMLASAQPAAIITPDELLPWVNEATHGN----PLLH--------  153 (579)
T ss_pred             hHHHHHHHHHHcCCeeEeccCCcccccchHHHHHHHHHHHhcCCCEEEeChHHHHHHHHhhccc----cccc--------
Confidence            999999999999999999986432       589999999999999999987665554332111    0111        


Q ss_pred             hhhHhhhcCceeeeHHHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhh-hhhhccccCCC
Q 010455          187 QKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQ-MFVVTGKVCSE  265 (510)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~-~~~~~~~~~~~  265 (510)
                                 ...++.+..............++++++++|||||||.||+|.++|++++..+..... .+     ++..
T Consensus       154 -----------~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~-----~~~~  217 (579)
T PRK09192        154 -----------VLSHAWFKALPEADVALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGL-----KVRP  217 (579)
T ss_pred             -----------eeehhhhcccCCCccccCCCCCCCeEEEEecCCCCCCCceEEeeHHHHHHHHHHHHhhcc-----cCCC
Confidence                       111222221111111122345689999999999999999999999999998887665 55     7888


Q ss_pred             CcEEEEecChHHHHHHHH-HHHHHhcCcEEEEeCC-----CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccCh
Q 010455          266 EDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGA  339 (510)
Q Consensus       266 ~d~~~~~~pl~h~~g~~~-~l~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~  339 (510)
                      +|+++..+|++|.+|+.. ++.++..|+++++.+.     ++..+++.+.++++++++..|..+..+.....        
T Consensus       218 ~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~l~~~~~~--------  289 (579)
T PRK09192        218 GDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLPTRDFARRPLQWLDLISRNRGTISYSPPFGYELCARRVN--------  289 (579)
T ss_pred             CCeEEEeCCCCCcchhHHHHHHHHHhCCeeEeeCHHHHHHCHHHHHHHHHhcCcEEEeCCcHHHHHHHHhhc--------
Confidence            999999999999999875 6667899999877652     68899999999999987765555544432110        


Q ss_pred             hHHHHHHHHHHhhhhhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcC------CCeee
Q 010455          340 LSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG------APLTQ  413 (510)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g------~~l~~  413 (510)
                                                ....+.++++        ++|.+++||+++++.+.+.+.+.++      ..+++
T Consensus       290 --------------------------~~~~~~~~l~--------~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~  335 (579)
T PRK09192        290 --------------------------SKDLAELDLS--------CWRVAGIGADMIRPDVLHQFAEAFAPAGFDDKAFMP  335 (579)
T ss_pred             --------------------------cccccccchh--------hhheeEecCccCCHHHHHHHHHHHHhcCCChhhccc
Confidence                                      0011223343        8999999999999999998888763      34899


Q ss_pred             eccccccccceecccCCCC---------------------------ccCCccccccCCeEEEEeecCCCCcCCCCCCCcc
Q 010455          414 GYGLTESCSGCFTSLADVF---------------------------NMIGTVGVPMTTVEARLESVPEMGYDALSSVPRG  466 (510)
Q Consensus       414 ~yG~tE~~~~~~~~~~~~~---------------------------~~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~G  466 (510)
                      .||+||++..++.......                           ....++|+|+|+++++|+| +++..++.+  +.|
T Consensus       336 ~yG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~p~~~v~i~d-~~~~~~~~g--~~G  412 (579)
T PRK09192        336 SYGLAEATLAVSFSPLGSGIVVEEVDRDRLEYQGKAVAPGAETRRVRTFVNCGKALPGHEIEIRN-EAGMPLPER--VVG  412 (579)
T ss_pred             ccccccceeEEeccCCCCCceEEEEcHHHhcCCceeeccCCCCccceeEeecCCcCCCcEEEEEC-CCCCCCCCC--CEE
Confidence            9999999876654322110                           0124799999999999999 888777665  899


Q ss_pred             eEEEecCCccccccCCchhhhhhh-ccCccccCCe-eeccCCccC
Q 010455          467 EICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGKN-PWQYTFKKL  509 (510)
Q Consensus       467 ei~v~g~~v~~gY~~~~~~~~~~~-~~gw~~TGDl-~~d~dG~~~  509 (510)
                      ||+++|++++.||+++ +.+.+.+ .+|||+|||+ ++ +||++.
T Consensus       413 el~i~g~~~~~gY~~~-~~~~~~~~~dgw~~TGDlg~~-~~G~l~  455 (579)
T PRK09192        413 HICVRGPSLMSGYFRD-EESQDVLAADGWLDTGDLGYL-LDGYLY  455 (579)
T ss_pred             EEEecCCchhhhhcCC-ccccccccCCceeeccceeeE-ECCEEE
Confidence            9999999999999999 5666666 7999999999 99 888764

>PRK08279 long-chain-acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.4e-47  Score=404.03  Aligned_cols=392  Identities=18%  Similarity=0.229  Sum_probs=301.3

Q ss_pred             CCCCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHH
Q 010455           40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM  119 (510)
Q Consensus        40 ~~~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~  119 (510)
                      ....++.++|.++++++|+++|+++.   +      +.+||+||.++++++|.+|.+.|+++|++|+++++|++++++++
T Consensus        34 ~~~~tl~~~l~~~a~~~p~~~Ai~~~---~------~~~Ty~eL~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~v~~~  104 (600)
T PRK08279         34 DSKRSLGDVFEEAAARHPDRPALLFE---D------QSISYAELNARANRYAHWAAARGVGKGDVVALLMENRPEYLAAW  104 (600)
T ss_pred             CCcccHHHHHHHHHHhCCCCcEEEeC---C------CcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHH
Confidence            45678999999999999999999875   4      57999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCceee
Q 010455          120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCF  199 (510)
Q Consensus       120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  199 (510)
                      |||+++|++++++++..+.+++.++++.++++++|++++....+.+..... .....++..++....          ...
T Consensus       105 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----------~~~  173 (600)
T PRK08279        105 LGLAKLGAVVALLNTQQRGAVLAHSLNLVDAKHLIVGEELVEAFEEARADL-ARPPRLWVAGGDTLD----------DPE  173 (600)
T ss_pred             HHHHhcCcEEeecCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHhhhh-cccceEEEecCcccc----------ccc
Confidence            999999999999999999999999999999999999988776654433222 122233333221100          011


Q ss_pred             eHHHHHHcC---CC--CCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecC
Q 010455          200 SWEEFLQLG---TL--DCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLP  274 (510)
Q Consensus       200 ~~~~~~~~~---~~--~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p  274 (510)
                      .+.++....   ..  .........+++++|+|||||||.||+|.+||+++.+++.++...+     .+.++|++++.+|
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~l~~~d~~l~~~p  248 (600)
T PRK08279        174 GYEDLAAAAAGAPTTNPASRSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLL-----RLTPDDVLYCCLP  248 (600)
T ss_pred             cHHHHhhhcccCCccCCCcccCCCccccEEEEEcCCCCCCCcEEEEeHHHHHHHHHHHHHhc-----CCCCCcEEEEecC
Confidence            222222211   11  1112334568999999999999999999999999999999887777     8889999999999


Q ss_pred             hHHHHHHHH-HHHHHhcCcEEEEeCC-CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhh
Q 010455          275 LAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYK  352 (510)
Q Consensus       275 l~h~~g~~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (510)
                      ++|.+++.. .+.++..|+++++.+. ++..+++.++++++|++.++|.+++.++....                     
T Consensus       249 l~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~l~~~l~~~~~---------------------  307 (600)
T PRK08279        249 LYHNTGGTVAWSSVLAAGATLALRRKFSASRFWDDVRRYRATAFQYIGELCRYLLNQPP---------------------  307 (600)
T ss_pred             chhhhhHHHHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhcceEEeehHHHHHHHHhCCC---------------------
Confidence            999999885 4557888998888765 89999999999999999999999988764110                     


Q ss_pred             hhhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCC-CeeeeccccccccceecccCCC
Q 010455          353 LGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGA-PLTQGYGLTESCSGCFTSLADV  431 (510)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~-~l~~~yG~tE~~~~~~~~~~~~  431 (510)
                                   ..   ....        .++|.+  +|+.+++++.+.+.+.++. .+++.||+||++..++. .   
T Consensus       308 -------------~~---~~~~--------~~l~~~--~g~~l~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~-~---  357 (600)
T PRK08279        308 -------------KP---TDRD--------HRLRLM--IGNGLRPDIWDEFQQRFGIPRILEFYAASEGNVGFIN-V---  357 (600)
T ss_pred             -------------Cc---cccC--------cceeEE--ecCCCCHHHHHHHHHHhCcceeeeeecccccceeecc-c---
Confidence                         00   0000        267654  4778999999999998886 59999999998764332 2   


Q ss_pred             CccCCccccccC----CeEE---------EEeecCCCCcCCCCCCCcceEE--EecCCccccccCCchhhhhhh-c----
Q 010455          432 FNMIGTVGVPMT----TVEA---------RLESVPEMGYDALSSVPRGEIC--LRGNTLFSGYYKRPDLTEEVI-V----  491 (510)
Q Consensus       432 ~~~~~svG~p~~----g~~i---------~ivd~~~~~~~~~~~~~~Gei~--v~g~~v~~gY~~~~~~~~~~~-~----  491 (510)
                      ...++++|++.+    +..+         .+.+ .++.......++.|||+  ++|++++.|| ++++.+.+.| .    
T Consensus       358 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~g~~Gel~~~i~~~~~~~GY-~~~~~t~~~~~~~~~~  435 (600)
T PRK08279        358 FNFDGTVGRVPLWLAHPYAIVKYDVDTGEPVRD-ADGRCIKVKPGEVGLLIGRITDRGPFDGY-TDPEASEKKILRDVFK  435 (600)
T ss_pred             CCCCcccccccccccccceeeeeccCcCceeeC-CCCccccCCCCCceeEEEEecCccccccc-CCchhhHHHHhhcccC
Confidence            123367887666    3333         2333 33332334455899998  6799999999 8888887776 2    


Q ss_pred             --cCccccCCe-eeccCCccC
Q 010455          492 --DGWFHTGKN-PWQYTFKKL  509 (510)
Q Consensus       492 --~gw~~TGDl-~~d~dG~~~  509 (510)
                        ++||+|||+ ++|+||++.
T Consensus       436 ~~~~~~~TGDlg~~~~dG~l~  456 (600)
T PRK08279        436 KGDAWFNTGDLMRDDGFGHAQ  456 (600)
T ss_pred             CCCceEeecceEEEcCCccEE
Confidence              579999999 999999865

>PRK08162 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2e-46  Score=394.08  Aligned_cols=403  Identities=23%  Similarity=0.278  Sum_probs=301.7

Q ss_pred             CCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHH
Q 010455           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (510)
Q Consensus        42 ~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA  121 (510)
                      +.++.++|++.++.+|+++|+.+.   +      ..+||+||.++++++|.+|.+.|+++||+|+++++|++++++++||
T Consensus        17 ~~~~~~~~~~~~~~~~~~~a~~~~---~------~~~ty~~L~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA   87 (545)
T PRK08162         17 PLTPLSFLERAAEVYPDRPAVIHG---D------RRRTWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFG   87 (545)
T ss_pred             cCCHHHHHHHHHHHCCCCeEEEEC---C------eEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHH
Confidence            368899999999999999999764   3      5799999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCceeeeH
Q 010455          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW  201 (510)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  201 (510)
                      |+++|++++|+++..+.+++..+++.++++.++++.+....+.+..... ... ..+.+.......   ..........+
T Consensus        88 ~~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~---~~~~~~~~~~~  162 (545)
T PRK08162         88 VPMAGAVLNTLNTRLDAASIAFMLRHGEAKVLIVDTEFAEVAREALALL-PGP-KPLVIDVDDPEY---PGGRFIGALDY  162 (545)
T ss_pred             HHHhCcEEeccccccChHHHHHHHHhCCCeEEEEccchhhHHHHHHhhC-CCC-ceEEEecCcccc---ccCCCcccccH
Confidence            9999999999999999999999999999999999988776554432211 111 122222111000   00011123345


Q ss_pred             HHHHHcCCCCCC-CCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHH
Q 010455          202 EEFLQLGTLDCE-LPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD  280 (510)
Q Consensus       202 ~~~~~~~~~~~~-~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g  280 (510)
                      +++......... ....+..++++++|||||||.||+|+++|+++..........+     .+..++++++.+|++|..+
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~-----~~~~~~~~l~~~pl~h~~~  237 (545)
T PRK08162        163 EAFLASGDPDFAWTLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAW-----GMPKHPVYLWTLPMFHCNG  237 (545)
T ss_pred             HHHhccCCccccccCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhc-----CCCCCCeeEeccCcHhhhh
Confidence            655543311111 1123446789999999999999999999999877766544444     6778899999999999999


Q ss_pred             HHHHHH-HHhcCcEEEEeCCCHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhcccC
Q 010455          281 QIIETH-CIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKG  359 (510)
Q Consensus       281 ~~~~l~-~l~~G~~~v~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (510)
                      +...+. .+..|.++++...++..+++.++++++|++.++|.++..|++....                           
T Consensus       238 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~---------------------------  290 (545)
T PRK08162        238 WCFPWTVAARAGTNVCLRKVDPKLIFDLIREHGVTHYCGAPIVLSALINAPAE---------------------------  290 (545)
T ss_pred             HHHHHHHHHHccEEEEeCCCCHHHHHHHHHHcCCeEEEechHHHHHHHhCccc---------------------------
Confidence            875444 4444444444445999999999999999999999999998752100                           


Q ss_pred             CCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeeccccccccceecccCCC--------
Q 010455          360 MPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADV--------  431 (510)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~~~~~~~~~--------  431 (510)
                                ....+        .+++.++++|++++..+.+++++. ++++++.||+||+++.+.......        
T Consensus       291 ----------~~~~~--------~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~  351 (545)
T PRK08162        291 ----------WRAGI--------DHPVHAMVAGAAPPAAVIAKMEEI-GFDLTHVYGLTETYGPATVCAWQPEWDALPLD  351 (545)
T ss_pred             ----------cccCC--------ccceEEEECCCCCCHHHHHHHHHh-CCceeecccccccCcceeecccccccccCCcc
Confidence                      00000        134556789999999999988774 999999999999865444322110        


Q ss_pred             --CccCCccccccCC-eEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhhccCccccCCe-eeccCCc
Q 010455          432 --FNMIGTVGVPMTT-VEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGKN-PWQYTFK  507 (510)
Q Consensus       432 --~~~~~svG~p~~g-~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDl-~~d~dG~  507 (510)
                        ....+++|.+.+. ..++|+|.+++.+++.+.++.|||+|+|+.++.||+++++.+.+.|.+|||+|||+ ++|+||+
T Consensus       352 ~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~g~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGDl~~~d~dg~  431 (545)
T PRK08162        352 ERAQLKARQGVRYPLQEGVTVLDPDTMQPVPADGETIGEIMFRGNIVMKGYLKNPKATEEAFAGGWFHTGDLAVLHPDGY  431 (545)
T ss_pred             chhhccCCCCcccCCcceEEEEcCCCCcccCCCCCceeEEEEecCcchhhhcCChhhhHHHhhCCCcccCceEEEcCCcc
Confidence              0112456776653 45788884456655553335799999999999999999999999999999999999 9999997


Q ss_pred             cC
Q 010455          508 KL  509 (510)
Q Consensus       508 ~~  509 (510)
                      +.
T Consensus       432 l~  433 (545)
T PRK08162        432 IK  433 (545)
T ss_pred             EE
Confidence            64

>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

Probab=100.00  E-value=7.9e-47  Score=393.46  Aligned_cols=377  Identities=19%  Similarity=0.202  Sum_probs=306.1

Q ss_pred             CCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHH
Q 010455           43 ESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC  122 (510)
Q Consensus        43 ~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA~  122 (510)
                      .++.++|+++++.+|+++++...   +      +.+||.||.++++++|.+|.+.|+.+|++|+++++|+.+++++++||
T Consensus         2 ~~~~~~l~~~a~~~p~~~~~~~~---~------~~~t~~~l~~~~~~~a~~l~~~g~~~~~~v~~~~~~~~~~~~~~~a~   72 (503)
T PRK04813          2 MDIIETIEEFAQTQPDFPAYDYL---G------EKLTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPEMLATFLGA   72 (503)
T ss_pred             chHHHHHHHHHHhCCCceEEEeC---C------cEEeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence            46889999999999999998754   3      57999999999999999999999999999999999999999999999


Q ss_pred             HhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCceeeeHH
Q 010455          123 NSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWE  202 (510)
Q Consensus       123 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  202 (510)
                      +++|++++|+++..+.+++..+++..+++++++++......        ..+ ..+...                  .+.
T Consensus        73 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~-~~~~~~------------------~~~  125 (503)
T PRK04813         73 VKAGHAYIPVDVSSPAERIEMIIEVAKPSLIIATEELPLEI--------LGI-PVITLD------------------ELK  125 (503)
T ss_pred             HHcCCEEecCCCCChHHHHHHHHHhcCCCEEEecccccccc--------cCC-cEEehH------------------Hhh
Confidence            99999999999999999999999999999999987641100        011 111110                  011


Q ss_pred             HHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHH
Q 010455          203 EFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQI  282 (510)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~  282 (510)
                      +...............++++++++|||||||.||+|.++|+++.....+....+     .+..+++++..+|++|..++.
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~~~~  200 (503)
T PRK04813        126 DIFATGNPYDFDHAVKGDDNYYIIFTSGTTGKPKGVQISHDNLVSFTNWMLEDF-----ALPEGPQFLNQAPYSFDLSVM  200 (503)
T ss_pred             hhhhccccccccccCCCCCcEEEEECCCCCCCCcEEEeehHHHHHHHHHHHHHc-----CCCcCceeeecCCcchhHhHH
Confidence            111111111112234578899999999999999999999999999888877766     788999999999999999987


Q ss_pred             HHHHHHhcCcEEEEeCC----CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhccc
Q 010455          283 IETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKK  358 (510)
Q Consensus       283 ~~l~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (510)
                      .++.++..|+++++.+.    ++..+++.++++++|++..+|+++..+.....                           
T Consensus       201 ~~~~~l~~g~~~v~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~---------------------------  253 (503)
T PRK04813        201 DLYPTLASGGTLVALPKDMTANFKQLFETLPQLPINVWVSTPSFADMCLLDPS---------------------------  253 (503)
T ss_pred             HHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCeEEEeChHHHHHHHHhhc---------------------------
Confidence            78889999999998764    78999999999999999999999987653110                           


Q ss_pred             CCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhc-CCCeeeeccccccccceecccCCC----Cc
Q 010455          359 GMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESCSGCFTSLADV----FN  433 (510)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~-g~~l~~~yG~tE~~~~~~~~~~~~----~~  433 (510)
                                ....++        +++|.++++|+++++.+.+++.+.+ ++.+++.||+||++...+......    ..
T Consensus       254 ----------~~~~~~--------~~l~~i~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~  315 (503)
T PRK04813        254 ----------FNEEHL--------PNLTHFLFCGEELPHKTAKKLLERFPSATIYNTYGPTEATVAVTSIEITDEMLDQY  315 (503)
T ss_pred             ----------cCcccC--------CCceEEEEecCcCCHHHHHHHHHHCCCceEEeCcccchheeEEEEEEecccccccC
Confidence                      001111        3899999999999999999999988 788999999999976554322111    12


Q ss_pred             cCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhh--ccC--ccccCCe-eeccCCcc
Q 010455          434 MIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI--VDG--WFHTGKN-PWQYTFKK  508 (510)
Q Consensus       434 ~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~--~~g--w~~TGDl-~~d~dG~~  508 (510)
                      ...++|+|.++++++|+| +++..++.+  +.|||+|+|+.++.||+++++.+.+.|  .+|  ||+|||+ ++ +||++
T Consensus       316 ~~~~~g~~~~~~~~~i~d-~~~~~~~~g--~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~g~~~~~tGD~~~~-~~g~~  391 (503)
T PRK04813        316 KRLPIGYAKPDSPLLIID-EEGTKLPDG--EQGEIVISGPSVSKGYLNNPEKTAEAFFTFDGQPAYHTGDAGYL-EDGLL  391 (503)
T ss_pred             CCCcccccCCCCEEEEEC-CCCCCCCCC--CceEEEEeccccccccCCChhHhHHhhccCCCceeEECCceEEe-eCCeE
Confidence            235799999999999999 888777665  899999999999999999999998887  244  9999999 99 88875


Q ss_pred             C
Q 010455          509 L  509 (510)
Q Consensus       509 ~  509 (510)
                      .
T Consensus       392 ~  392 (503)
T PRK04813        392 F  392 (503)
T ss_pred             E
Confidence            4

>PRK13391 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=7.3e-47  Score=394.17  Aligned_cols=387  Identities=19%  Similarity=0.206  Sum_probs=302.8

Q ss_pred             HHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHHHhcCCeE
Q 010455           50 CDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITY  129 (510)
Q Consensus        50 ~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA~~~~G~~~  129 (510)
                      ...++++|+++|+++.   ++.    +.+||.||.++++++|++|.+.|+++|++|+++++|+++++++++||+++|+++
T Consensus         4 ~~~a~~~p~~~a~~~~---~~~----~~~ty~~l~~~~~~la~~L~~~g~~~~~~V~v~~~~~~~~~~~~~a~~~~G~~~   76 (511)
T PRK13391          4 GIHAQTTPDKPAVIMA---STG----EVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYY   76 (511)
T ss_pred             hhhHhhCCCceEEEec---CCC----CEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhccEE
Confidence            4678889999999864   332    579999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCceeeeHHHHHHcCC
Q 010455          130 VPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGT  209 (510)
Q Consensus       130 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (510)
                      +++++..+.+++.++++.++++.++++......+.+.... .......+.......         ......+++..... 
T Consensus        77 ~~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~-  145 (511)
T PRK13391         77 TCVNSHLTPAEAAYIVDDSGARALITSAAKLDVARALLKQ-CPGVRHRLVLDGDGE---------LEGFVGYAEAVAGL-  145 (511)
T ss_pred             eccccccCHHHHHHHHhccCCcEEEEchhhHHHHHHHHhc-CCCceEEEEecCCCC---------CcccccHHHHhcCC-
Confidence            9999999999999999999999999998776654433222 223333333332111         00122233333211 


Q ss_pred             CCCCCCCCCCCCeEEEEecCCCCCCCceEEe--ecHHHHHHH---hhhhhhhhhccccCCCCcEEEEecChHHHHHHHHH
Q 010455          210 LDCELPPKKKTNISTIMYTSGTTGEPKGVVL--TNQAIVAEV---LSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIE  284 (510)
Q Consensus       210 ~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~--sh~~l~~~~---~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~  284 (510)
                        +.......++.++++|||||||.||+|.+  +|.++....   ..+...+     .+..++++++.+|++|..++...
T Consensus       146 --~~~~~~~~~~~a~il~TSGtTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~h~~~~~~~  218 (511)
T PRK13391        146 --PATPIADESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQRLW-----GFRSDMVYLSPAPLYHSAPQRAV  218 (511)
T ss_pred             --CCCCCCCcccccEEEECCCCCCCCCEEEEccccchhhhhhHHHHHHHHhc-----CCCCCCeEEEcCCHHHHHHHHHH
Confidence              11111234467899999999999999995  466654332   2233333     67788999999999999998877


Q ss_pred             HHHHhcCcEEEEeCC-CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhcccCCCCC
Q 010455          285 THCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQN  363 (510)
Q Consensus       285 l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (510)
                      +.++..|+++++.+. ++..+++.++++++|++.++|+++..+.+....                               
T Consensus       219 ~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~-------------------------------  267 (511)
T PRK13391        219 MLVIRLGGTVIVMEHFDAEQYLALIEEYGVTHTQLVPTMFSRMLKLPEE-------------------------------  267 (511)
T ss_pred             HHHHHcCceEEECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCchh-------------------------------
Confidence            889999999998865 999999999999999999999999887641110                               


Q ss_pred             CchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeeccccccccceecccCCCCccCCccccccC
Q 010455          364 KAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMT  443 (510)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~~~~~~~~~~~~~~svG~p~~  443 (510)
                          ..+++++        .++|.+++||+++++++.+++.+.+|..+++.||+||++.++..........++++|+|++
T Consensus       268 ----~~~~~~~--------~~l~~~~~gg~~~~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~~~~vG~~~~  335 (511)
T PRK13391        268 ----VRDKYDL--------SSLEVAIHAAAPCPPQVKEQMIDWWGPIIHEYYAATEGLGFTACDSEEWLAHPGTVGRAMF  335 (511)
T ss_pred             ----hcccCCc--------cceeEEEEccCCCCHHHHHHHHHHcCCceeeeeccccccceEEecCccccccCCCcCCccc
Confidence                0111122        2899999999999999999999988999999999999988765543333344579999999


Q ss_pred             CeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhh-c-cCccccCCe-eeccCCccC
Q 010455          444 TVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-V-DGWFHTGKN-PWQYTFKKL  509 (510)
Q Consensus       444 g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~-~gw~~TGDl-~~d~dG~~~  509 (510)
                      + .++|+| +++.+.+.|  +.|||+++|+ ++.||+++++.+.+.| . +|||+|||+ ++|+||++.
T Consensus       336 g-~~~i~d-~~~~~~~~g--~~Gel~~~g~-~~~gy~~~~~~~~~~~~~~~~w~~TGD~g~~~~~g~l~  399 (511)
T PRK13391        336 G-DLHILD-DDGAELPPG--EPGTIWFEGG-RPFEYLNDPAKTAEARHPDGTWSTVGDIGYVDEDGYLY  399 (511)
T ss_pred             c-eEEEEC-CCCCCCCCC--CceEEEEecC-cceEEcCChhHhHHhhccCCCEEecCCEEEECCCccEE
Confidence            9 699999 888777655  8999999999 8999999999998888 4 499999999 999999754

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=100.00  E-value=5.5e-47  Score=430.39  Aligned_cols=392  Identities=19%  Similarity=0.216  Sum_probs=302.6

Q ss_pred             CCCCHHHHHHHHHhhCC-CCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHH
Q 010455           41 GLESPWQFFCDSAKRIP-NNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM  119 (510)
Q Consensus        41 ~~~sl~~~l~~~a~~~p-~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~  119 (510)
                      ...++.+.|.+.++++| ++.++.+.   ++     +.+||+||.++++++|+.|++ |+++||+|+++++|++++++++
T Consensus       629 ~~~~~~~~l~~~~~~~~~~~~ai~~~---~~-----~~~Ty~el~~~~~~lA~~L~~-g~~~gd~V~i~~~n~~~~~~~~  699 (1140)
T PRK06814        629 YDRTLFEALIEAAKIHGFKKLAVEDP---VN-----GPLTYRKLLTGAFVLGRKLKK-NTPPGENVGVMLPNANGAAVTF  699 (1140)
T ss_pred             ccCCHHHHHHHHHHHcCCCCeEeECC---CC-----CccCHHHHHHHHHHHHHHHHh-cCCCCCeEEEEcCCchHHHHHH
Confidence            35778889999998886 45666532   22     579999999999999999975 9999999999999999999999


Q ss_pred             HHHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHh-hcCccCCCCccEEEEecCCChhhhhHhhhcCcee
Q 010455          120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSIL-SCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSC  198 (510)
Q Consensus       120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  198 (510)
                      +||+++|++++|+++..+.+++.+++++++++++|++++..+... ............++.+++.....        ...
T Consensus       700 la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~~  771 (1140)
T PRK06814        700 FALQSAGRVPAMINFSAGIANILSACKAAQVKTVLTSRAFIEKARLGPLIEALEFGIRIIYLEDVRAQI--------GLA  771 (1140)
T ss_pred             HHHHHCCCEEEEcCCCCCHHHHHHHHHHcCCCEEEecHHHHhhhcchhHHHHhccCceEEEehHhhccC--------ChH
Confidence            999999999999999999999999999999999999875443210 00000011122344443221100        000


Q ss_pred             eeHHHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHH
Q 010455          199 FSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHI  278 (510)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~  278 (510)
                      ..+.+...............++++++++|||||||.||+|.++|+++.+.+......+     ...++|++++.+|++|.
T Consensus       772 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~-----~~~~~d~~l~~~pl~h~  846 (1140)
T PRK06814        772 DKIKGLLAGRFPLVYFCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARI-----DFSPEDKVFNALPVFHS  846 (1140)
T ss_pred             HHHHHHhhccCCccccCCCCCCCcEEEEECCCccCCCcEEEecHHHHHHHHHHHHHhh-----CCCCcCEEEEecchHHH
Confidence            0111111111111111134679999999999999999999999999999988877777     78899999999999999


Q ss_pred             HHHH-HHHHHHhcCcEEEEeCC--CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhh
Q 010455          279 YDQI-IETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGN  355 (510)
Q Consensus       279 ~g~~-~~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (510)
                      +++. ..+.++..|+++++.+.  +...+.+.++++++|++.++|+++..+.+..                         
T Consensus       847 ~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~-------------------------  901 (1140)
T PRK06814        847 FGLTGGLVLPLLSGVKVFLYPSPLHYRIIPELIYDTNATILFGTDTFLNGYARYA-------------------------  901 (1140)
T ss_pred             HHHHHHHHHHHHcCCEEEEecCcccHHHHHHHHHhcCCEEEEecHHHHHHHHhhc-------------------------
Confidence            9985 47789999999998764  6677889999999999999999998875410                         


Q ss_pred             cccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeeccccccccceecccCCCCccC
Q 010455          356 MKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMI  435 (510)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~~~~~~~~~~~~~  435 (510)
                                    +..++        +++|.+++||+++++++.+.+.+.+|+++++.||+||++..++...... ...
T Consensus       902 --------------~~~~~--------~~lr~v~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~-~~~  958 (1140)
T PRK06814        902 --------------HPYDF--------RSLRYVFAGAEKVKEETRQTWMEKFGIRILEGYGVTETAPVIALNTPMH-NKA  958 (1140)
T ss_pred             --------------ccccc--------cceeEEEEcCCcCCHHHHHHHHHHhCCcEEeccccccccceEEecCCCC-CCC
Confidence                          01112        2899999999999999999999989999999999999988766544332 234


Q ss_pred             CccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhh-hccCccccCCe-eeccCCccC
Q 010455          436 GTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEV-IVDGWFHTGKN-PWQYTFKKL  509 (510)
Q Consensus       436 ~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~-~~~gw~~TGDl-~~d~dG~~~  509 (510)
                      +++|+|+|++++++++ .++      .++.|||+++|++++.||+++++..... +.+|||+|||+ ++|+||++.
T Consensus       959 ~~vG~p~~g~~~~~~~-~~~------~~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~ 1027 (1140)
T PRK06814        959 GTVGRLLPGIEYRLEP-VPG------IDEGGRLFVRGPNVMLGYLRAENPGVLEPPADGWYDTGDIVTIDEEGFIT 1027 (1140)
T ss_pred             CcCCccCCCCeEEEee-cCC------CCCceEEEEeCCCcchhhcCCCCCCccccCCCCeEecCCEEEECCCCeEE
Confidence            7999999999999988 332      2378999999999999999986543222 26899999999 999999764

>PRK05850 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.1e-47  Score=401.93  Aligned_cols=394  Identities=18%  Similarity=0.236  Sum_probs=290.3

Q ss_pred             CHHHHHHHHHhhCCCCcceeeeeccCC---CCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHH
Q 010455           44 SPWQFFCDSAKRIPNNQMLGGRKVSDG---KVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME  120 (510)
Q Consensus        44 sl~~~l~~~a~~~p~~~a~~~~~~~~~---~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~l  120 (510)
                      ++.++|++++..+|+++|+++.   +.   ..+..+.+||+||.++++++|++|.+.| .+||+|+++++|++++++++|
T Consensus         2 s~~~~l~~~a~~~p~~~a~~~~---~~~~~~~~~~~~lty~eL~~~v~~~A~~L~~~g-~~gd~V~l~~~n~~~~~~~~l   77 (578)
T PRK05850          2 SVPSLLRERASLQPDDAAFTFI---DYEQDPAGVAETLTWSQLYRRTLNVAEELRRHG-STGDRAVILAPQGLEYIVAFL   77 (578)
T ss_pred             cHHHHHHHHHhcCCCceEEEEE---ccCCCCCCceeeecHHHHHHHHHHHHHHHHHhC-CCCCEEEEEcCCcccHHHHHH
Confidence            5789999999999999999875   31   1122468999999999999999999999 689999999999999999999


Q ss_pred             HHHhcCCeEEEecC---CCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccC-CCCccEEEEecCCChhhhhHhhhcCc
Q 010455          121 ACNSQAITYVPLYD---TLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRC-CLYLKTIVSFANVSSSQKKEAEELGV  196 (510)
Q Consensus       121 A~~~~G~~~v~l~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~  196 (510)
                      ||+++|++++|+++   ..+.+++.++++.+++++++++++....+.+..... ......++..+..             
T Consensus        78 A~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------  144 (578)
T PRK05850         78 GALQAGLIAVPLSVPQGGAHDERVSAVLRDTSPSVVLTTSAVVDDVTEYVAPQPGQSAPPVIEVDLL-------------  144 (578)
T ss_pred             HHHHcCceEEecCCCCccchHHHHHHHHHhcCCCEEEEcHHHHHHHHHHHhhcccccccceEeeccc-------------
Confidence            99999999999997   457889999999999999999987666554321110 0011112211110             


Q ss_pred             eeeeHHHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhh-hhccccCCCCcEEEEecCh
Q 010455          197 SCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMF-VVTGKVCSEEDTYFSFLPL  275 (510)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~-~~~~~~~~~~d~~~~~~pl  275 (510)
                            ++..  ..........++++++++|||||||.||||+++|+++++++......+ .........++++++++|+
T Consensus       145 ------~~~~--~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl  216 (578)
T PRK05850        145 ------DLDS--PRGSDARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDTTVVSWLPF  216 (578)
T ss_pred             ------cccc--CCccccCCCCCCCeEEEEeCCCCCCCCceEEEeHHHHHHHHHHHHHhhccccccCCCCcceEEEECCC
Confidence                  0000  000111234568999999999999999999999999998876654332 1000113567899999999


Q ss_pred             HHHHHHHH-HHHHHhcCcEEEEeCC-----CHhhHHHHHhhhcCcEEEeccHHHHHHH-HHHHHHhhccChhHHHHHHHH
Q 010455          276 AHIYDQII-ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIY-TGISNKISSGGALSKKLFEFA  348 (510)
Q Consensus       276 ~h~~g~~~-~l~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~-~~~~~~~~~~~~~~~~~~~~~  348 (510)
                      +|..|+.. ++.+++.|+++++.+.     ++..+++.+++++++++ .+|.++..++ ....                 
T Consensus       217 ~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~-~~p~~~~~~~~~~~~-----------------  278 (578)
T PRK05850        217 YHDMGLVLGVCAPILGGCPAVLTSPVAFLQRPARWMQLLASNPHAFS-AAPNFAFELAVRKTS-----------------  278 (578)
T ss_pred             CCCchhHHHHHHHHhcCCcEEEeCHHHHHHCHHHHHHHHHHcCCeEE-eCCcHHHHHHHHhcc-----------------
Confidence            99999874 7889999999998763     68999999999999865 5666544332 2110                 


Q ss_pred             HHhhhhhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcC------CCeeeecccccccc
Q 010455          349 YNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG------APLTQGYGLTESCS  422 (510)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g------~~l~~~yG~tE~~~  422 (510)
                                       ......++++        ++|.+++||+++++++.++|.+.++      ..+++.||+||++.
T Consensus       279 -----------------~~~~~~~~~~--------~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~  333 (578)
T PRK05850        279 -----------------DDDMAGLDLG--------GVLGIISGSERVHPATLKRFADRFAPFNLRETAIRPSYGLAEATV  333 (578)
T ss_pred             -----------------hhhhcCcchh--------hheeEEECcCCCCHHHHHHHHHHHHhcCcCcccccCccchhhhhh
Confidence                             0011112232        7999999999999999999888763      36899999999876


Q ss_pred             ceecccCCCC------------------------ccCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCcccc
Q 010455          423 GCFTSLADVF------------------------NMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSG  478 (510)
Q Consensus       423 ~~~~~~~~~~------------------------~~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~g  478 (510)
                      .+........                        ....++|.|. +.+++|+|.+++.+++.|  +.|||+|+|++++.|
T Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~g~p~-~~~~~ivd~~~~~~~~~g--~~Gel~v~g~~~~~g  410 (578)
T PRK05850        334 YVATREPGQPPESVRFDYEKLSAGHAKRCETGGGTPLVSYGSPR-SPTVRIVDPDTCIECPAG--TVGEIWVHGDNVAAG  410 (578)
T ss_pred             heeccCCCCCceEEEECHHHHhCCceEecCCCCCceEEeccCCC-CCEEEEEcCCCCcCCCCC--CEEEEEEecCccccc
Confidence            5443221110                        0012345554 578999993345556555  899999999999999


Q ss_pred             ccCCchhhhhhhc------------cCccccCCe-eeccCCccC
Q 010455          479 YYKRPDLTEEVIV------------DGWFHTGKN-PWQYTFKKL  509 (510)
Q Consensus       479 Y~~~~~~~~~~~~------------~gw~~TGDl-~~d~dG~~~  509 (510)
                      |+++|+.+.+.|.            +|||+|||+ ++| ||++.
T Consensus       411 Y~~~~~~t~~~f~~~~~~~~~~~~~~~w~~TGDl~~~~-~G~l~  453 (578)
T PRK05850        411 YWQKPEETERTFGATLVDPSPGTPEGPWLRTGDLGFIS-EGELF  453 (578)
T ss_pred             ccCChhhhHHHhhcccccccccCCCCCeeeccceeeEE-CCEEE
Confidence            9999999998882            579999999 998 88764

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=2.8e-47  Score=472.07  Aligned_cols=379  Identities=20%  Similarity=0.281  Sum_probs=315.5

Q ss_pred             CCCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHH
Q 010455           41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME  120 (510)
Q Consensus        41 ~~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~l  120 (510)
                      ...++.++|+++++++|+++|+.+.   +      ..+||+||.++++++|++|++.|+++|++|++++++++++++++|
T Consensus      1129 ~~~~l~~~~~~~a~~~p~~~Al~~~---~------~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~s~~~iv~~l 1199 (4334)
T PRK05691       1129 AQAWLPELLNEQARQTPERIALVWD---G------GSLDYAELHAQANRLAHYLRDKGVGPDVCVAIAAERSPQLLVGLL 1199 (4334)
T ss_pred             ccCCHHHHHHHHHHhCCCCeEEEEC---C------ceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence            3468999999999999999999875   4      479999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCceeee
Q 010455          121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFS  200 (510)
Q Consensus       121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  200 (510)
                      |++++|++++|++|..+.+++.++++.++++++|++......+...     ... ..+......                
T Consensus      1200 ailkaG~~~vpld~~~p~~rl~~il~~~~~~~vi~~~~~~~~~~~~-----~~~-~~~~~~~~~---------------- 1257 (4334)
T PRK05691       1200 AILKAGGAYVPLDPDYPAERLAYMLADSGVELLLTQSHLLERLPQA-----EGV-SAIALDSLH---------------- 1257 (4334)
T ss_pred             HHHHhCCEEEecCcCChHHHHHHHHHhcCCCEEEecchhhhhcccc-----cCc-eEEeecccc----------------
Confidence            9999999999999999999999999999999999987654433111     000 111111110                


Q ss_pred             HHHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHH
Q 010455          201 WEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD  280 (510)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g  280 (510)
                      ...    ...........++++++++|||||||.||||+++|+++.+.+.+....+     ++.++|+++...|++|..+
T Consensus      1258 ~~~----~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~~fd~s 1328 (4334)
T PRK05691       1258 LDS----WPSQAPGLHLHGDNLAYVIYTSGSTGQPKGVGNTHAALAERLQWMQATY-----ALDDSDVLMQKAPISFDVS 1328 (4334)
T ss_pred             ccc----cCCCCCCCCCCCCCeEEEEEcCCCCCCCceeEeecHHHHHHHHHHHHhc-----CCCCCCEEEEeCCccHHHH
Confidence            000    0011112234678999999999999999999999999999999887777     8889999999999999999


Q ss_pred             HHHHHHHHhcCcEEEEeCC----CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhc
Q 010455          281 QIIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNM  356 (510)
Q Consensus       281 ~~~~l~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (510)
                      +..++.+|..|+++++.+.    ++..+++.++++++|++.++|++++.++....                         
T Consensus      1329 ~~~~~~~L~~G~~l~i~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~------------------------- 1383 (4334)
T PRK05691       1329 VWECFWPLITGCRLVLAGPGEHRDPQRIAELVQQYGVTTLHFVPPLLQLFIDEPL------------------------- 1383 (4334)
T ss_pred             HHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEECcHHHHHHHHhCcc-------------------------
Confidence            8888999999999999752    88999999999999999999999998864100                         


Q ss_pred             ccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhc-CCCeeeeccccccccceecccC-CCCcc
Q 010455          357 KKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESCSGCFTSLA-DVFNM  434 (510)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~-g~~l~~~yG~tE~~~~~~~~~~-~~~~~  434 (510)
                                    ..++        ++||.+++||+++++++.+++.+.+ ++.++|.||+||++..++.... .....
T Consensus      1384 --------------~~~~--------~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~ 1441 (4334)
T PRK05691       1384 --------------AAAC--------TSLRRLFSGGEALPAELRNRVLQRLPQVQLHNRYGPTETAINVTHWQCQAEDGE 1441 (4334)
T ss_pred             --------------cccC--------CcccEEEEeecCCCHHHHHHHHHhCCCcEEEeCCCcChheeeeeeeecccccCC
Confidence                          0011        3899999999999999999998876 6889999999999876664322 22223


Q ss_pred             CCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhh-c-----c--CccccCCe-eeccC
Q 010455          435 IGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-V-----D--GWFHTGKN-PWQYT  505 (510)
Q Consensus       435 ~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~-----~--gw~~TGDl-~~d~d  505 (510)
                      ..++|+|+++++++|+| ++++.++.|  +.|||+|+|+++++||+|+|+.+.+.| .     +  +||+|||+ ++++|
T Consensus      1442 ~~~iG~p~~~~~~~i~d-~~~~~vp~G--~~GEL~i~G~~v~~GYl~~p~~t~~~f~~~p~~~~~~r~yrTGDl~~~~~d 1518 (4334)
T PRK05691       1442 RSPIGRPLGNVLCRVLD-AELNLLPPG--VAGELCIGGAGLARGYLGRPALTAERFVPDPLGEDGARLYRTGDRARWNAD 1518 (4334)
T ss_pred             CCcccceeCCCEEEEEC-CCCCCCCCC--CceEEEecCcccchhhcCCccccHhhCCCCCCCCCCceEEEccceEEECCC
Confidence            46899999999999999 888888777  899999999999999999999999998 3     2  49999999 99999


Q ss_pred             CccC
Q 010455          506 FKKL  509 (510)
Q Consensus       506 G~~~  509 (510)
                      |.+.
T Consensus      1519 G~l~ 1522 (4334)
T PRK05691       1519 GALE 1522 (4334)
T ss_pred             CCEE
Confidence            9763

>PTZ00297 pantothenate kinase; Provisional

Probab=100.00  E-value=2.7e-45  Score=405.51  Aligned_cols=424  Identities=20%  Similarity=0.289  Sum_probs=331.8

Q ss_pred             CCCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHH
Q 010455           41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME  120 (510)
Q Consensus        41 ~~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~l  120 (510)
                      ...++.++|++.++++|+++|+...   . ..+.++++||+|+.++++++|.+|.++|+++||+|+|+++|+++|+++.+
T Consensus       425 ~~~Tl~dll~~~a~~~pd~~al~~~---~-~~g~~~~lTY~El~~~V~~lAa~L~~lGV~~GDrVaIls~N~~Ewvia~l  500 (1452)
T PTZ00297        425 GVRSLGEMWERSVTRHSTFRCLGQT---S-ESGESEWLTYGTVDARARELGSGLLALGVRPGDVIGVDCEASRNIVILEV  500 (1452)
T ss_pred             cCCCHHHHHHHHHHHCCCCeEEEEe---c-cCCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Confidence            3469999999999999999998642   1 12334689999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhh-hHhhhcCceee
Q 010455          121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQK-KEAEELGVSCF  199 (510)
Q Consensus       121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~  199 (510)
                      ||+++|++++|+++  +.+++.+++++++++++|++.+....+.+...   ..++.++++++...... ......+....
T Consensus       501 A~~~~GaV~VPly~--t~~eL~yIL~~S~akvVfv~~~~l~kl~~i~~---~~Lr~IIv~d~~~~~~~~~~~~~~~i~~~  575 (1452)
T PTZ00297        501 ACALYGFTTLPLVG--KGSTMRTLIDEHKIKVVFADRNSVAAILTCRS---RKLETVVYTHSFYDEDDHAVARDLNITLI  575 (1452)
T ss_pred             HHHHcCCEEEeCCC--CHHHHHHHHHhcCCcEEEEchhHHHHHHhhcc---cCCcEEEEECCCcccccccccccCCccee
Confidence            99999999999975  46799999999999999999887776655432   36788888864211000 00001123456


Q ss_pred             eHHHHHHcCCC-C-CCCCCCCCCCeEEEEe---cCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecC
Q 010455          200 SWEEFLQLGTL-D-CELPPKKKTNISTIMY---TSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLP  274 (510)
Q Consensus       200 ~~~~~~~~~~~-~-~~~~~~~~~~~a~i~~---TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p  274 (510)
                      +|+++...+.. . .......+++++.|+|   ||||||.||||++||+|+++++.........  .....+|++++++|
T Consensus       576 s~~~ll~~G~~~~~~~~~~~~~dDlatIiYtSyTSGTTG~PKGVmLTH~Nlla~~~~~~~~~~~--~~~~~~D~~Ls~LP  653 (1452)
T PTZ00297        576 PYEFVEQKGRLCPVPLKEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTGVL--PSSFKKHLMVHFTP  653 (1452)
T ss_pred             eHHHHHhcCcccCccccCCCCcccEEEEEecCCCCCCCcCCcEEEEeHHHHHHHHHHHhhhccc--cCCCCCCEEEEech
Confidence            78888876521 1 1123346788998986   9999999999999999999999886542200  13457899999999


Q ss_pred             hHHHHHHHHHHHHHhcCcEEEEeCCCHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhh
Q 010455          275 LAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLG  354 (510)
Q Consensus       275 l~h~~g~~~~l~~l~~G~~~v~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (510)
                      ++|+++....+.+++.|+++.+.  ++..+++.+++++||+++++|++|+.+.+.+..+....+.+.++++++|...+..
T Consensus       654 LaHI~er~~~~~~l~~G~~I~~~--d~~~lledL~~~rPTv~~~VPrv~ekI~~~i~~~~~~~~~~~~~lf~~A~~~k~~  731 (1452)
T PTZ00297        654 FAMLFNRVFVLGLFAHGSAVATV--DAAHLQRAFVKFQPTILVAAPSLFSTSRLQLSRANERYSAVYSWLFERAFQLRSR  731 (1452)
T ss_pred             HHHHHHHHHHHHHHHcCCEEEeC--CHHHHHHHHHHHCCEEEEecHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence            99999977778889999998753  7899999999999999999999999999999999988889999999999998876


Q ss_pred             hcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecC--CCCHHHHHHHHHhcCCCeeeeccccccccceecccCCCC
Q 010455          355 NMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAA--PLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVF  432 (510)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~--~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~~~~~~~~~~  432 (510)
                      ....+   ......++.+.++++|+.+|+++|.+++||+  +++..+..      ++.++.+||+||+.   +.+.....
T Consensus       732 ~~~~g---~~~~~l~d~LVf~kir~~lGGrlr~~isGga~~~l~~~l~~------~i~i~~g~glTE~~---~~~~~~~~  799 (1452)
T PTZ00297        732 LINIH---RRDSSLLRFIFFRATQELLGGCVEKIVLCVSEESTSFSLLE------HISVCYVPCLREVF---FLPSEGVF  799 (1452)
T ss_pred             HHhcC---CCCcHHHHHHHHHHHHHHhcCCeEEEEECCCccccChHHhC------CceEEEecceEEee---eecCCCCc
Confidence            55543   2234578899999999999999999999984  44432222      67889999999943   33333332


Q ss_pred             ccCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhhccCccccCCe-eecc
Q 010455          433 NMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGKN-PWQY  504 (510)
Q Consensus       433 ~~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDl-~~d~  504 (510)
                      .   ..|.|+||+++||++.++.+..    ...|||+++       |+++|+.|.+ +.+||+..|.+ .+|-
T Consensus       800 ~---~~G~PlpgvEvKI~~~~E~~~~----~~~GEIlvr-------~~kdpe~T~e-~~~gW~~dG~L~IidR  857 (1452)
T PTZ00297        800 C---VDGTPAPSLQVDLEPFDEPSDG----AGIGQLVLA-------KKGEPRRTLP-IAAQWKRDRTLRLLGP  857 (1452)
T ss_pred             c---cCCeecCceEEEEcccccccCC----CCCCeEEEE-------ECCChHHHHH-hhCcCccCCeEEEEec
Confidence            2   2399999999999974443221    136999995       4589999987 45899999998 6664

>PRK07798 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.2e-45  Score=384.18  Aligned_cols=400  Identities=22%  Similarity=0.248  Sum_probs=308.1

Q ss_pred             CHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHHH
Q 010455           44 SPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACN  123 (510)
Q Consensus        44 sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA~~  123 (510)
                      ++.++|+++++++|+++|+.+.   +      +.+||.||.++++++|++|.+.|+++||+|+++++|+++++++++||+
T Consensus         4 ~l~~~~~~~a~~~p~~~a~~~~---~------~~~ty~el~~~~~~la~~L~~~g~~~~~~v~v~~~n~~~~~~~~~a~~   74 (533)
T PRK07798          4 NIADLFEAVADAVPDRVALVCG---D------RRLTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAF   74 (533)
T ss_pred             cHHHHHHHHHHhCCCceEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHH
Confidence            7899999999999999999865   3      579999999999999999999999999999999999999999999999


Q ss_pred             hcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCceeeeHHH
Q 010455          124 SQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEE  203 (510)
Q Consensus       124 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (510)
                      ++|++++++++.++.+++.++++.+++++++++......+.+.... ....+.++.+++....      ........+++
T Consensus        75 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~------~~~~~~~~~~~  147 (533)
T PRK07798         75 KARAVPVNVNYRYVEDELRYLLDDSDAVALVYEREFAPRVAEVLPR-LPKLRTLVVVEDGSGN------DLLPGAVDYED  147 (533)
T ss_pred             hcCeEEEecCcCCCHHHHHHHHhhcCCCEEEEchhhHHHHHHHhcc-CCCccEEEEecCCccc------ccCCccccHHH
Confidence            9999999999999999999999999999999998776666554322 2445566666543211      00112335666


Q ss_pred             HHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhh----ccccC------CCCcEEEEec
Q 010455          204 FLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVV----TGKVC------SEEDTYFSFL  273 (510)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~----~~~~~------~~~d~~~~~~  273 (510)
                      ++........... ..++.++++|||||||.||+|+++|+++...+......+..    ....+      ..+++++..+
T Consensus       148 ~~~~~~~~~~~~~-~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (533)
T PRK07798        148 ALAAGSPERDFGE-RSPDDLYLLYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPAP  226 (533)
T ss_pred             HHhccCCcCCCCC-CCCCceEEEECCCCCCCCcEEEEecHHHHHHHhhhhhhhcccchhhhhhhcccccCCCCceEEEec
Confidence            6544322111112 23445789999999999999999999998765543221100    00111      5678999999


Q ss_pred             ChHHHHHHHHHHHHHhcCcEEEEeC--C-CHhhHHHHHhhhcCcEEEeccHHHHH-HHHHHHHHhhccChhHHHHHHHHH
Q 010455          274 PLAHIYDQIIETHCIHKGCSIGFWR--G-DVRYLMEDIQELKPTMFSGVPRVYDR-IYTGISNKISSGGALSKKLFEFAY  349 (510)
Q Consensus       274 pl~h~~g~~~~l~~l~~G~~~v~~~--~-~~~~~~~~i~~~~~t~~~~~P~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~  349 (510)
                      |++|..++..++.+++.|+++++.+  . ++..+++.++++++|++.++|..+.. +.+.+. .                
T Consensus       227 pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~-~----------------  289 (533)
T PRK07798        227 PLMHGAGQWAAFAALFSGQTVVLLPDVRFDADEVWRTIEREKVNVITIVGDAMARPLLDALE-A----------------  289 (533)
T ss_pred             chhhhhhHHHHHHHHhcCceEEEecCCCcCHHHHHHHHHHhCCeEEEechHHHHHHHHHHhc-c----------------
Confidence            9999999988889999999999987  3 89999999999999999999987654 332111 0                


Q ss_pred             HhhhhhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhc-CCCeeeeccccccccceeccc
Q 010455          350 NYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESCSGCFTSL  428 (510)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~-g~~l~~~yG~tE~~~~~~~~~  428 (510)
                                         ....++        .++|.+++||+++++++.+++.+.+ +..+++.||+||++.+.....
T Consensus       290 -------------------~~~~~~--------~~l~~i~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~  342 (533)
T PRK07798        290 -------------------RGPYDL--------SSLFAIASGGALFSPSVKEALLELLPNVVLTDSIGSSETGFGGSGTV  342 (533)
T ss_pred             -------------------cccCCC--------CceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeecccccccccccCC
Confidence                               000011        3899999999999999999999888 788999999999976554332


Q ss_pred             CCCCccCCccc--cccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhhc--c--CccccCCe-e
Q 010455          429 ADVFNMIGTVG--VPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV--D--GWFHTGKN-P  501 (510)
Q Consensus       429 ~~~~~~~~svG--~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~--~--gw~~TGDl-~  501 (510)
                      ....   ...|  ++.++..++|+| +++.+++.|....|+++ +++.++.||+++++.+.+.|.  +  +||+|||+ +
T Consensus       343 ~~~~---~~~g~~~~~~~~~~~i~~-~~~~~~~~g~~~~g~l~-~~~~~~~gy~~~~~~t~~~f~~~~~~~~~~TGD~~~  417 (533)
T PRK07798        343 AKGA---VHTGGPRFTIGPRTVVLD-EDGNPVEPGSGEIGWIA-RRGHIPLGYYKDPEKTAETFPTIDGVRYAIPGDRAR  417 (533)
T ss_pred             CCCC---ccCCCCccCCCceEEEEC-CCCCCCCCCCCCeeEEE-eecCccccccCChhhhHHhhccCCCCceEEcCcEEE
Confidence            2111   2334  788999999999 88887766632226665 556899999999999998882  3  59999999 9


Q ss_pred             eccCCccC
Q 010455          502 WQYTFKKL  509 (510)
Q Consensus       502 ~d~dG~~~  509 (510)
                      +|+||++.
T Consensus       418 ~~~~g~l~  425 (533)
T PRK07798        418 VEADGTIT  425 (533)
T ss_pred             EcCCCcEE
Confidence            99999764

>PRK08276 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=6.2e-46  Score=386.47  Aligned_cols=372  Identities=19%  Similarity=0.226  Sum_probs=294.6

Q ss_pred             EEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEE
Q 010455           76 VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFV  155 (510)
Q Consensus        76 ~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~  155 (510)
                      +.+||.||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|++++|+++..+.+++..+++.++++.+|+
T Consensus        10 ~~~ty~el~~~v~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~ii~   89 (502)
T PRK08276         10 EVVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLTAAEIAYIVDDSGAKVLIV   89 (502)
T ss_pred             cEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHhcCCCCEEEE
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCceeeeHHHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCC
Q 010455          156 QENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEP  235 (510)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~p  235 (510)
                      ++.....+.+........+..++......           .....+++......   .......++.++++|||||||.|
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~---~~~~~~~~~~a~i~~TSGtTG~P  155 (502)
T PRK08276         90 SAALADTAAELAAELPAGVPLLLVVAGPV-----------PGFRSYEEALAAQP---DTPIADETAGADMLYSSGTTGRP  155 (502)
T ss_pred             ccchhhHHHHHhhhccccccEEEEeCCCC-----------CccccHHHHHhcCC---CCCCCCCCcceEEEECCCCCCCC
Confidence            98776655443222211344444442211           11234444443221   11223456789999999999999


Q ss_pred             ceEEeecHHHHHHHh--hhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCcEEEEeCC-CHhhHHHHHhhhc
Q 010455          236 KGVVLTNQAIVAEVL--SVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELK  312 (510)
Q Consensus       236 K~v~~sh~~l~~~~~--~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~  312 (510)
                      |+|.++|.++.....  ........ ......++++++.+|++|..++...+.++..|+++++.+. ++..+++.+++++
T Consensus       156 K~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~  234 (502)
T PRK08276        156 KGIKRPLPGLDPDEAPGMMLALLGF-GMYGGPDSVYLSPAPLYHTAPLRFGMSALALGGTVVVMEKFDAEEALALIERYR  234 (502)
T ss_pred             ceEEEccCCcchhhhhHHhhhhhhh-cccCCCCCEEEEcCcHHHHHHHHHHHHHHhccceEEEcCCCCHHHHHHHHHHhC
Confidence            999999887654321  11111101 0123577899999999999998877789999999988765 8999999999999


Q ss_pred             CcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEec
Q 010455          313 PTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGA  392 (510)
Q Consensus       313 ~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg  392 (510)
                      +|++.++|+++..+++...                                   ...+.++++        ++|.+++||
T Consensus       235 ~t~~~~~P~~~~~l~~~~~-----------------------------------~~~~~~~~~--------~lr~i~~~g  271 (502)
T PRK08276        235 VTHSQLVPTMFVRMLKLPE-----------------------------------EVRARYDVS--------SLRVAIHAA  271 (502)
T ss_pred             CeEEEehHHHHHHHHhCcc-----------------------------------ccCCCCCcc--------cceEEEecC
Confidence            9999999999998864110                                   001122333        899999999


Q ss_pred             CCCCHHHHHHHHHhcCCCeeeeccccccccceecccCCCCccCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEec
Q 010455          393 APLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRG  472 (510)
Q Consensus       393 ~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~~~~~~~~~~~~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g  472 (510)
                      ++++.++.+++.+.+|..+++.||+||++.+++..........+++|+|+ +++++|+| +++.+++.|  +.|||+++|
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d-~~~~~~~~g--~~Gel~v~~  347 (502)
T PRK08276        272 APCPVEVKRAMIDWWGPIIHEYYASSEGGGVTVITSEDWLAHPGSVGKAV-LGEVRILD-EDGNELPPG--EIGTVYFEM  347 (502)
T ss_pred             CCCCHHHHHHHHHHhCcHhhhhcccccccceeEecCccccccCCCcceec-ccEEEEEC-CCCCCCcCC--CceEEEEEC
Confidence            99999999999998899999999999999876655444334457899999 88999999 788777655  899999999


Q ss_pred             CCccccccCCchhhhhhh-ccCccccCCe-eeccCCccC
Q 010455          473 NTLFSGYYKRPDLTEEVI-VDGWFHTGKN-PWQYTFKKL  509 (510)
Q Consensus       473 ~~v~~gY~~~~~~~~~~~-~~gw~~TGDl-~~d~dG~~~  509 (510)
                      +.++.||+++++.+.+.+ .+|||+|||+ ++|+||++.
T Consensus       348 ~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~  386 (502)
T PRK08276        348 DGYPFEYHNDPEKTAAARNPHGWVTVGDVGYLDEDGYLY  386 (502)
T ss_pred             CCccchhcCCHHHHHHHhcCCCceeecceEEEcCCcCEE
Confidence            999999999999999988 5699999999 999999754

>TIGR01733 AA-adenyl-dom amino acid adenylation domain

Probab=100.00  E-value=1e-45  Score=374.68  Aligned_cols=351  Identities=22%  Similarity=0.305  Sum_probs=289.2

Q ss_pred             eHHHHHHHHHHHHHHHHh-CCCCCCCEEEEEcCCchhHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcC
Q 010455           79 TYQEVYDAAIRFGSAMRS-RGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQE  157 (510)
Q Consensus        79 Ty~~l~~~v~~lA~~L~~-~gv~~gd~Vai~~~ns~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~  157 (510)
                      ||.||.++++++|.+|.+ .|+++||+|+++++|+++++++++||+++|++++|+++..+.+++..+++.++++.+++++
T Consensus         1 t~~~l~~~~~~~a~~l~~~~g~~~gd~v~l~~~n~~~~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~ii~~~   80 (408)
T TIGR01733         1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGARLLLTDS   80 (408)
T ss_pred             CHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHhcCCCEEEEcC
Confidence            799999999999999998 8999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCceeeeHHHHHHcC-CCCCCCCCCCCCCeEEEEecCCCCCCCc
Q 010455          158 NKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPK  236 (510)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGtTG~pK  236 (510)
                      .....+.....       .++.+...                 +....... ...........+++++++|||||||.||
T Consensus        81 ~~~~~~~~~~~-------~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTtG~pK  136 (408)
T TIGR01733        81 ALASRLAGLVL-------PIILVDPL-----------------ELAALDDAPAPPPPDAPSGPDDLAYVIYTSGSTGRPK  136 (408)
T ss_pred             chhhhccccCC-------ceEEechh-----------------hhhhcccccccccccCCCCCCCcEEEEEcCCCCCCCC
Confidence            76654432211       11111110                 00000000 0001111135788999999999999999


Q ss_pred             eEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCcEEEEeCC----CHhhHHHHHhhhc
Q 010455          237 GVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG----DVRYLMEDIQELK  312 (510)
Q Consensus       237 ~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~l~~l~~G~~~v~~~~----~~~~~~~~i~~~~  312 (510)
                      +|.+||+++......+...+     .+..+|++++..|++|.+++..++.++..|+++++.+.    .+..+.+.+++++
T Consensus       137 ~v~~s~~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~  211 (408)
T TIGR01733       137 GVVVTHRSLVNLLAWLARRY-----GLDPDDRVLQFASLSFDASVEEIFGTLLAGATLVVPPEDEERDAALLAALIAEHP  211 (408)
T ss_pred             EEEeccHHHHHHHHHHHHhc-----CCCCCceEEEecCCccchhHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHcC
Confidence            99999999999999888776     78899999999999999998889999999999998775    2688999999999


Q ss_pred             CcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEec
Q 010455          313 PTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGA  392 (510)
Q Consensus       313 ~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg  392 (510)
                      +|.+.++|.+++.+.+...                                        ..+        .+||.+++||
T Consensus       212 ~t~l~~~p~~~~~l~~~~~----------------------------------------~~~--------~~l~~v~~~g  243 (408)
T TIGR01733       212 VTVLNLTPSLLALLAAALP----------------------------------------PAL--------ASLRLVILGG  243 (408)
T ss_pred             ceEEEeCHHHHHHHHHhhh----------------------------------------hcc--------cCceEEEEeC
Confidence            9999999999999875321                                        111        3899999999


Q ss_pred             CCCCHHHHHHHHHhcC-CCeeeeccccccccceecccCCCCc----cCCccccccCCeEEEEeecCCCCcCCCCCCCcce
Q 010455          393 APLPIHVEEFLRVTSG-APLTQGYGLTESCSGCFTSLADVFN----MIGTVGVPMTTVEARLESVPEMGYDALSSVPRGE  467 (510)
Q Consensus       393 ~~~~~~~~~~~~~~~g-~~l~~~yG~tE~~~~~~~~~~~~~~----~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Ge  467 (510)
                      +++++++.+++.+.++ +.+++.||+||++.++.........    .+.++|.|+++++++|+| +++..++.|  +.||
T Consensus       244 ~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~~~~~g--~~Ge  320 (408)
T TIGR01733       244 EALTPALVDRWRARGPGARLINLYGPTETTVWSTATLVDADDAPRESPVPIGRPLANTRLYVLD-DDLRPVPVG--VVGE  320 (408)
T ss_pred             ccCCHHHHHHHHHhCCCcEEEecccCCceEEEEEEEEcCccccCCccccccCcccCCceEEEEC-CCCCCCCCC--CceE
Confidence            9999999999999997 8999999999999877533222211    147899999999999999 777766655  8999


Q ss_pred             EEEecCCccccccCCchhhhhhh-cc------C--ccccCCe-eeccCCccC
Q 010455          468 ICLRGNTLFSGYYKRPDLTEEVI-VD------G--WFHTGKN-PWQYTFKKL  509 (510)
Q Consensus       468 i~v~g~~v~~gY~~~~~~~~~~~-~~------g--w~~TGDl-~~d~dG~~~  509 (510)
                      |+++|+.++.||+++++.+.+.| .+      |  ||+|||+ ++|+||++.
T Consensus       321 l~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl~~~d~~g~~~  372 (408)
T TIGR01733       321 LYIGGPGVARGYLNRPELTAERFVPDPFAGGDGARLYRTGDLVRYLPDGNLE  372 (408)
T ss_pred             EEecCccccccccCChhhhhcceeeCCCCCCCCceEEECCceEEEcCCCCEE
Confidence            99999999999999999998887 22      3  9999999 999999764

This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.

>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=1.8e-45  Score=383.69  Aligned_cols=376  Identities=19%  Similarity=0.207  Sum_probs=293.2

Q ss_pred             EEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEE
Q 010455           76 VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFV  155 (510)
Q Consensus        76 ~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~  155 (510)
                      +.+||.||.++++++|++|.+.|+++|++|+++++|+++++++++||+++|++++++++..+.+++.++++.++++.+++
T Consensus        10 ~~~Ty~el~~~~~~la~~l~~~g~~~g~~V~v~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~i~~   89 (509)
T PRK12406         10 RRRSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEIAYILEDSGARVLIA   89 (509)
T ss_pred             eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCcccCHHHHHHHHhccCCcEEEE
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCChhhHhhcCccCCCCccEEEEecCCChhhh-----hHhhhcCceeeeHHHHHHcCCCCCCCCCCCCCCeEEEEecCC
Q 010455          156 QENKIPSILSCLPRCCLYLKTIVSFANVSSSQK-----KEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSG  230 (510)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSG  230 (510)
                      +......+.+.....   + .++..........     ............++++....   ........+++++++||||
T Consensus        90 ~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~a~i~~TSG  162 (509)
T PRK12406         90 HADLLHGLASALPAG---V-TVLSVPTPPEIAAAYRISPALLTPPAGAIDWEGWLAQQ---EPYDGPPVPQPQSMIYTSG  162 (509)
T ss_pred             ccchhhhhhhhhhcc---c-ceeecccccccccccccccccccCCCCccCHHHHhccc---CccCCCCCCCceEEEECCC
Confidence            887766554332211   1 1111111100000     00000011233455544321   1122335689999999999


Q ss_pred             CCCCCceEEeecHHHHH---HHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCcEEEEeCC-CHhhHHH
Q 010455          231 TTGEPKGVVLTNQAIVA---EVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG-DVRYLME  306 (510)
Q Consensus       231 tTG~pK~v~~sh~~l~~---~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~l~~l~~G~~~v~~~~-~~~~~~~  306 (510)
                      |||.||+|.++|.....   ........+     ++..++++++.+|++|..+....+.++..|+++++.+. ++..+++
T Consensus       163 tTG~PK~v~~s~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  237 (509)
T PRK12406        163 TTGHPKGVRRAAPTPEQAAAAEQMRALIY-----GLKPGIRALLTGPLYHSAPNAYGLRAGRLGGVLVLQPRFDPEELLQ  237 (509)
T ss_pred             CCCCCceEEEechhHHHHHHHHHhhhhhc-----CCCCCceEEEEeCCcccchHHHHHHHHhhheEEEEccCCCHHHHHH
Confidence            99999999987765433   333333444     67889999999999999887777778889999988765 8999999


Q ss_pred             HHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhcccCCCCCCchhhHHHHHHHHHHHHhCCcEe
Q 010455          307 DIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQ  386 (510)
Q Consensus       307 ~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr  386 (510)
                      .++++++|++.++|+++..++.....                                   ..+.+++        .++|
T Consensus       238 ~l~~~~~t~~~~~P~~~~~l~~~~~~-----------------------------------~~~~~~~--------~~l~  274 (509)
T PRK12406        238 LIERHRITHMHMVPTMFIRLLKLPEE-----------------------------------VRAKYDV--------SSLR  274 (509)
T ss_pred             HHHHcCCeEEEccHHHHHHHHhCchh-----------------------------------hcccCCC--------Ccee
Confidence            99999999999999999988641100                                   0111122        2899


Q ss_pred             EEEEecCCCCHHHHHHHHHhcCCCeeeeccccccccceecccCCCCccCCccccccCCeEEEEeecCCCCcCCCCCCCcc
Q 010455          387 AMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRG  466 (510)
Q Consensus       387 ~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~~~~~~~~~~~~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~G  466 (510)
                      .+++||+++++++.+++.+.+++.+++.||+||++.+++....+....++++|+|+++++++|+| +++.+++.|  +.|
T Consensus       275 ~v~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~g--~~G  351 (509)
T PRK12406        275 HVIHAAAPCPADVKRAMIEWWGPVIYEYYGSTESGAVTFATSEDALSHPGTVGKAAPGAELRFVD-EDGRPLPQG--EIG  351 (509)
T ss_pred             EEEEcCCCCCHHHHHHHHHHcCCcEEeeccccccCceEecCcccccccCCCcCccCCCcEEEEEC-CCCCCCCCC--Cce
Confidence            99999999999999999998899999999999999876655444334458899999999999999 888777665  899


Q ss_pred             eEEEecCCccc-cccCCchhhhhhhccCccccCCe-eeccCCccC
Q 010455          467 EICLRGNTLFS-GYYKRPDLTEEVIVDGWFHTGKN-PWQYTFKKL  509 (510)
Q Consensus       467 ei~v~g~~v~~-gY~~~~~~~~~~~~~gw~~TGDl-~~d~dG~~~  509 (510)
                      ||+++|+.++. ||+++++.+.+.+.+|||+|||+ ++|+||++.
T Consensus       352 el~v~~~~~~~~~y~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~  396 (509)
T PRK12406        352 EIYSRIAGNPDFTYHNKPEKRAEIDRGGFITSGDVGYLDADGYLF  396 (509)
T ss_pred             EEEEECCccccccccCCchhcccccCCCCeEEccEEEEcCCceEE
Confidence            99999998875 99999998888778999999999 999999754

>PRK07768 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.8e-45  Score=386.78  Aligned_cols=384  Identities=20%  Similarity=0.222  Sum_probs=297.4

Q ss_pred             CCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHH
Q 010455           43 ESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC  122 (510)
Q Consensus        43 ~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA~  122 (510)
                      .++.+.|...+..+|+.+++...   +..    +.+||.||.++++++|.+|.+.|+++||+|+++++|+++++++++||
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~---~~~----~~~ty~el~~~v~~~a~~L~~~g~~~gd~V~l~~~~~~~~~~~~la~   74 (545)
T PRK07768          2 SRFTEKMYANARTSPRGMVTGEP---DAP----VRHTWGEVHERARRIAGGLAAAGVGPGDAVAVLAGAPVEIAPTAQGL   74 (545)
T ss_pred             chHHHHHHHHhhCCCcceEEecC---CCc----eEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHH
Confidence            46888899999999999988654   432    67999999999999999999999999999999999999999999999


Q ss_pred             HhcCCeEEEecCCCCHHHH-------HHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcC
Q 010455          123 NSQAITYVPLYDTLGANAV-------EFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELG  195 (510)
Q Consensus       123 ~~~G~~~v~l~~~~~~~~l-------~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  195 (510)
                      +++|++++++++..+.+++       ..+++.++++.+++++.....+... ...                        .
T Consensus        75 ~~~g~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~------------------------~  129 (545)
T PRK07768         75 WMRGASLTMLHQPTPRTDLAVWAEDTLRVIGMIGAKAVVVGEPFLAAAPVL-EEK------------------------G  129 (545)
T ss_pred             HHcCccccccCCCCCcchhHHHHHHHHHHHHhCCCCEEEecchhhhhhhhh-ccc------------------------C
Confidence            9999999999988776544       4567778999999987654322111 000                        0


Q ss_pred             ceeeeHHHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCC-cEEEEecC
Q 010455          196 VSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEE-DTYFSFLP  274 (510)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~-d~~~~~~p  274 (510)
                      .....++++......  ......++++++++|||||||.||+|+++|+++...+......+     ++..+ |++++.+|
T Consensus       130 ~~~~~~~~l~~~~~~--~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~~d~~~~~~p  202 (545)
T PRK07768        130 IRVLTVADLLAADPI--DPVETGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAA-----EFDVETDVMVSWLP  202 (545)
T ss_pred             CceeehhhhcccCCC--CcCCCCCCCEEEEEeCCCCCCCCceEEEcHHHHHHHHHHHHHhc-----CCCCCCceeEEeCC
Confidence            012234444332211  12234578999999999999999999999999999888776666     56665 89999999


Q ss_pred             hHHHHHHHH-HHHHHhcCcEEEEeCC-----CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHH
Q 010455          275 LAHIYDQII-ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFA  348 (510)
Q Consensus       275 l~h~~g~~~-~l~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~  348 (510)
                      ++|..++.. ++.++..|+++++.+.     ++..+.+.+++++++++...|..+..+...+.....             
T Consensus       203 ~~~~~g~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~-------------  269 (545)
T PRK07768        203 LFHDMGMVGFLTVPMYFGAELVKVTPMDFLRDPLLWAELISKYRGTMTAAPNFAYALLARRLRRQAK-------------  269 (545)
T ss_pred             CccchHHHHHHHHHHHCCceEEEeCHHHHHHhHHHHHHHHHHhCCEEEECchHHHHHHHHHHhcccc-------------
Confidence            999999875 5668999999988753     678889999999999988777777665543211100             


Q ss_pred             HHhhhhhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHh---cCC---Ceeeecccccccc
Q 010455          349 YNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVT---SGA---PLTQGYGLTESCS  422 (510)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~---~g~---~l~~~yG~tE~~~  422 (510)
                                          ....+++        ++|.+++||+++++++.+++.+.   +|.   .+++.||+||++.
T Consensus       270 --------------------~~~~~~~--------~lr~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~yG~tE~~~  321 (545)
T PRK07768        270 --------------------PGAFDLS--------SLRFALNGAEPIDPADVEDLLDAGARFGLRPEAILPAYGMAEATL  321 (545)
T ss_pred             --------------------ccCCCch--------heeeEEeccCCCCHHHHHHHHHHHHhcCCCcccccccccccccce
Confidence                                0011222        89999999999999999988774   455   4999999999987


Q ss_pred             ceecccCCC-------------------------CccCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccc
Q 010455          423 GCFTSLADV-------------------------FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFS  477 (510)
Q Consensus       423 ~~~~~~~~~-------------------------~~~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~  477 (510)
                      .++......                         ....+++|+|+++++++|+| ++++.++.+  +.|||+++|+.++.
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~-~~~~~~~~g--~~Gel~v~~~~~~~  398 (545)
T PRK07768        322 AVSFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRRLATLGPPLPGLEVRVVD-EDGQVLPPR--GVGVIELRGESVTP  398 (545)
T ss_pred             EEEccCCCCCcceeeechhHhhccCceeccCCCCcceEEeccCCCCCCEEEEEC-CCCCCCCCC--CEEEEEEccCcccc
Confidence            654432211                         11236899999999999999 888777655  89999999999999


Q ss_pred             cccCCchhhhhhhccCccccCCe-eeccCCccC
Q 010455          478 GYYKRPDLTEEVIVDGWFHTGKN-PWQYTFKKL  509 (510)
Q Consensus       478 gY~~~~~~~~~~~~~gw~~TGDl-~~d~dG~~~  509 (510)
                      ||++++......+.+|||+|||+ ++|+||.+.
T Consensus       399 gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~  431 (545)
T PRK07768        399 GYLTMDGFIPAQDADGWLDTGDLGYLTEEGEVV  431 (545)
T ss_pred             cccCCCCCcccccCCCeeeccceEEEecCCEEE
Confidence            99987655444447899999999 999999754

>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=1e-45  Score=380.26  Aligned_cols=345  Identities=27%  Similarity=0.325  Sum_probs=282.7

Q ss_pred             CCHHHHH-HHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHH
Q 010455           43 ESPWQFF-CDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (510)
Q Consensus        43 ~sl~~~l-~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA  121 (510)
                      .++.+++ ..+++++|+++|+.+.   +      +.+||.||.++++++|++|.+.|+++|++|+++++|+++++++++|
T Consensus         2 ~~~~~~~~~~~a~~~~~~~a~~~~---~------~~~ty~el~~~~~~~a~~L~~~g~~~~~~v~l~~~~~~~~~~~~la   72 (458)
T PRK09029          2 MIFSDWPWRHWAQVRPQAIALRLN---D------EVLTWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPETLLAYLA   72 (458)
T ss_pred             chhhcChHHHHHHhCCCceeeecC---C------cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHH
Confidence            3444554 5668899999999754   3      5799999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCceeeeH
Q 010455          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW  201 (510)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  201 (510)
                      |+++|++++|+++..+.+++..+++.+++++++++++... +..        +...                      ..
T Consensus        73 ~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~--------~~~~----------------------~~  121 (458)
T PRK09029         73 LLQCGARVLPLNPQLPQPLLEELLPSLTLDFALVLEGENT-FSA--------LTSL----------------------HL  121 (458)
T ss_pred             HHHcCCEEeecCCCCCHHHHHHHHHhcCCCEEEEcCcccc-hhh--------cccc----------------------cc
Confidence            9999999999999999999999999999999999766422 100        0000                      00


Q ss_pred             HHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHH
Q 010455          202 EEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ  281 (510)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~  281 (510)
                      .     ...........++++++++|||||||.||+|.+||++++..+......+     ....+|+++..+|++|.+|+
T Consensus       122 ~-----~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~h~~g~  191 (458)
T PRK09029        122 Q-----LVEGAHAVAWQPQRLATMTLTSGSTGLPKAAVHTAQAHLASAEGVLSLM-----PFTAQDSWLLSLPLFHVSGQ  191 (458)
T ss_pred             c-----cccccCcccCCCCCeEEEEECCCCCCCCCEEEEeHHHHHHHHHHHhhcC-----CCCccceEEEecCcHhhhhh
Confidence            0     0000111234578899999999999999999999999999988877766     78889999999999999998


Q ss_pred             HHHHHHHhcCcEEEEeCCCHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhcccCCC
Q 010455          282 IIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMP  361 (510)
Q Consensus       282 ~~~l~~l~~G~~~v~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (510)
                      ...+.++..|+++++.+.  ..+++.+  .++|.+..+|+++..++....                              
T Consensus       192 ~~~~~~l~~G~~v~~~~~--~~~~~~i--~~~t~~~~~P~~~~~l~~~~~------------------------------  237 (458)
T PRK09029        192 GIVWRWLYAGATLVVRDK--QPLEQAL--AGCTHASLVPTQLWRLLDNRS------------------------------  237 (458)
T ss_pred             HHHHHHHhCCceEEeCCh--HHHHHHH--hhceeeecChHHHHHHHhccc------------------------------
Confidence            777788999999998763  5566666  479999999999988764110                              


Q ss_pred             CCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeeccccccccceecccCCCCccCCccccc
Q 010455          362 QNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVP  441 (510)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~~~~~~~~~~~~~~svG~p  441 (510)
                              +   .        .++|.+++||+++++.+.+++... |.++++.||+||++...+....+   ...++|+|
T Consensus       238 --------~---~--------~~l~~i~~gG~~~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~~~~~---~~~~~G~~  294 (458)
T PRK09029        238 --------E---P--------LSLKAVLLGGAAIPVELTEQAEQQ-GIRCWCGYGLTEMASTVCAKRAD---GLAGVGSP  294 (458)
T ss_pred             --------c---C--------CcceEEEECCCCCCHHHHHHHHHc-CCcEeccccccccCcceeccCCC---CCCCCCCC
Confidence                    0   0        279999999999999999998865 99999999999998765443322   12569999


Q ss_pred             cCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhhccCccccCCe-eeccCCccC
Q 010455          442 MTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGKN-PWQYTFKKL  509 (510)
Q Consensus       442 ~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDl-~~d~dG~~~  509 (510)
                      +++++++|++              |||+|+|+.++.||+++++.+.....+|||+|||+ ++| ||++.
T Consensus       295 ~~~~~~~i~~--------------gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~TGD~~~~~-~g~l~  348 (458)
T PRK09029        295 LPGREVKLVD--------------GEIWLRGASLALGYWRQGQLVPLVNDEGWFATRDRGEWQ-NGELT  348 (458)
T ss_pred             CCCCEEEEeC--------------CEEEEecCceeeeeecCccccccccCCCccCCCCcEEEe-CCEEE
Confidence            9999999986              89999999999999999988765557899999999 999 88764

>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed

Probab=100.00  E-value=1.1e-44  Score=370.24  Aligned_cols=318  Identities=16%  Similarity=0.125  Sum_probs=256.3

Q ss_pred             EeHHHHHHHHHHHHHHHHhCCC-CCCCEEEEEcCCchhHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEc
Q 010455           78 LTYQEVYDAAIRFGSAMRSRGV-NPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQ  156 (510)
Q Consensus        78 ~Ty~~l~~~v~~lA~~L~~~gv-~~gd~Vai~~~ns~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~  156 (510)
                      +.|+||.++++++|.+|.+.|+ ++|++|+++++|+++++++++||+++|++++|++|.++.+++.++++.+++++++++
T Consensus        20 ~~~~el~~~~~~~a~~L~~~g~~~~~~~V~i~~~n~~e~~~~~~A~~~~G~~~vpl~~~~~~~~~~~~~~~~~~~~~i~~   99 (452)
T PRK07445         20 YNSQRFYQLAQQLYLQLQQLATPRTPPKILLAESDPLQFLAAFLAAVAAGCPVFLANPHWGQQEWQQVLNLVQPDQIWGL   99 (452)
T ss_pred             cChHHHHHHHHHHHHHHHHhcCCCCCCeEEEecCCCHHHHHHHHHHHHhCcEEEeeccCCCHHHHHHHHHhcCCCEEEec
Confidence            7899999999999999999988 579999999999999999999999999999999999999999999999999999987


Q ss_pred             CCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCceeeeHHHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCc
Q 010455          157 ENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPK  236 (510)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK  236 (510)
                      .......                ....                           ........++++++++|||||||.||
T Consensus       100 ~~~~~~~----------------~~~~---------------------------~~~~~~~~~~~~~~i~~TSGTTG~PK  136 (452)
T PRK07445        100 DQLKLSH----------------PPPL---------------------------PSQGILPNLETGWIMIPTGGSSGQIR  136 (452)
T ss_pred             Ccccccc----------------CCCC---------------------------CccccCCCCCCcEEEEeCCCCCCCCc
Confidence            6532100                0000                           00001234688999999999999999


Q ss_pred             eEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCcEEEEeCC-CHhhHHHHHhhhcCcE
Q 010455          237 GVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTM  315 (510)
Q Consensus       237 ~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~  315 (510)
                      +|++||+++...+......+     .+.+ ++.++.+|++|.+|+..++.+++.|+++++.+. ..........++++|+
T Consensus       137 gV~~t~~~l~~~~~~~~~~~-----~~~~-~~~~~~~Pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~~~~~~t~  210 (452)
T PRK07445        137 FAIHTWETLTASVQGFQRYF-----QLQQ-VNSFCVLPLYHVSGLMQFMRSFLTGGKLVILPYKRLKSGQELPPNPSDFF  210 (452)
T ss_pred             EEEechHHHHHHHHHHHHHh-----cCCC-CceEeccCchhhhhHHHHHHHHHcCCeEEEcChHhccchhhhhhhcCceE
Confidence            99999999998888776655     4444 467889999999999888889999999998764 2232233445788999


Q ss_pred             EEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCC
Q 010455          316 FSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPL  395 (510)
Q Consensus       316 ~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~  395 (510)
                      +.++|.+++.+++.                                        ...++        ++||.+++||+++
T Consensus       211 ~~~vP~~l~~l~~~----------------------------------------~~~~l--------~~l~~i~~gG~~l  242 (452)
T PRK07445        211 LSLVPTQLQRLLQL----------------------------------------RPQWL--------AQFRTILLGGAPA  242 (452)
T ss_pred             EEehHHHHHHHHhh----------------------------------------Chhhh--------hcceEEEECCccC
Confidence            99999999987641                                        00112        2899999999999


Q ss_pred             CHHHHHHHHHhcCCCeeeeccccccccceecccCCC-CccCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCC
Q 010455          396 PIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADV-FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNT  474 (510)
Q Consensus       396 ~~~~~~~~~~~~g~~l~~~yG~tE~~~~~~~~~~~~-~~~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~  474 (510)
                      ++++.+.+.. +++++++.||+||++..+....++. ....+++|+|+|+++++|++           ++.|||+|+|++
T Consensus       243 ~~~~~~~~~~-~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~p~~~v~i~~-----------g~~Gel~v~g~~  310 (452)
T PRK07445        243 WPSLLEQARQ-LQLRLAPTYGMTETASQIATLKPDDFLAGNNSSGQVLPHAQITIPA-----------NQTGNITIQAQS  310 (452)
T ss_pred             CHHHHHHHHh-cCCeEecCcchhhhcccccccCchhhccCCCcCCccCCCCeEEEcC-----------CCcceEEEeCCc
Confidence            9999988876 4899999999999976544333222 22347899999999999972           268999999999


Q ss_pred             ccccccCCchhhhhhhccCccccCCe-eeccCCccC
Q 010455          475 LFSGYYKRPDLTEEVIVDGWFHTGKN-PWQYTFKKL  509 (510)
Q Consensus       475 v~~gY~~~~~~~~~~~~~gw~~TGDl-~~d~dG~~~  509 (510)
                      ++.||++++..     .+|||+|||+ ++|+||++.
T Consensus       311 ~~~gY~~~~~~-----~~g~~~TGDl~~~d~dG~l~  341 (452)
T PRK07445        311 LALGYYPQILD-----SQGIFETDDLGYLDAQGYLH  341 (452)
T ss_pred             cchhhcCCccC-----CCCEEECCCEEEEcCCCCEE
Confidence            99999986432     4789999999 999999864

>TIGR01923 menE O-succinylbenzoate-CoA ligase

Probab=100.00  E-value=2.8e-44  Score=367.40  Aligned_cols=335  Identities=24%  Similarity=0.350  Sum_probs=275.4

Q ss_pred             eHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCC
Q 010455           79 TYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQEN  158 (510)
Q Consensus        79 Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~  158 (510)
                      ||+||.++++++|..|.+.|+++||+|+++++|+++++++++||+++|++++++++..+.+++..+++.++++.+++++.
T Consensus         1 Ty~~l~~~~~~~a~~l~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   80 (436)
T TIGR01923         1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTDSL   80 (436)
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhcCcEEEecCcCCCHHHHHHHHHhcCCCEEEEcCc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999876


Q ss_pred             ChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCceeeeHHHHHHcCC-CCCCCCCCCCCCeEEEEecCCCCCCCce
Q 010455          159 KIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKG  237 (510)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGtTG~pK~  237 (510)
                      .....              +.                  ...+..+..... ..........+++++++|||||||.||+
T Consensus        81 ~~~~~--------------~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~  128 (436)
T TIGR01923        81 LEEKD--------------FQ------------------ADSLDRIEAAGRYETSLSASFNMDQIATLMFTSGTTGKPKA  128 (436)
T ss_pred             ccccc--------------ee------------------ecchHhhhhcccccccccccCCcCceEEEEeCCCCCCCCcE
Confidence            32110              00                  001111111111 1111223456889999999999999999


Q ss_pred             EEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCcEEEEeCCCHhhHHHHHhhhcCcEEE
Q 010455          238 VVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFS  317 (510)
Q Consensus       238 v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~l~~l~~G~~~v~~~~~~~~~~~~i~~~~~t~~~  317 (510)
                      |.++|+++...+......+     +..++|+++..+|++|..++..++.++..|+++++.+. ...+++.++++++|++.
T Consensus       129 v~~s~~~~~~~~~~~~~~~-----~~~~~d~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~-~~~~~~~l~~~~~t~~~  202 (436)
T TIGR01923       129 VPHTFRNHYASAVGSKENL-----GFTEDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDK-FNQLLEMIANERVTHIS  202 (436)
T ss_pred             EEEehHHHHHHHHHHHhhc-----CCCCCceEEEccCcHhHHHHHHHHHHHhcCceEEecch-HHHHHHHHHHhCCeEEE
Confidence            9999999999988887777     78899999999999999998878889999999998764 34999999999999999


Q ss_pred             eccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCH
Q 010455          318 GVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPI  397 (510)
Q Consensus       318 ~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~  397 (510)
                      ++|+++..+++...                                     ..            .++|.+++||+++++
T Consensus       203 ~~P~~l~~l~~~~~-------------------------------------~~------------~~l~~~~~~G~~~~~  233 (436)
T TIGR01923       203 LVPTQLNRLLDEGG-------------------------------------HN------------ENLRKILLGGSAIPA  233 (436)
T ss_pred             eHHHHHHHHHhCcC-------------------------------------CC------------CceEEEEECCCCCCH
Confidence            99999998865110                                     00            279999999999999


Q ss_pred             HHHHHHHHhcCCCeeeeccccccccceecccCCCCccCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccc
Q 010455          398 HVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFS  477 (510)
Q Consensus       398 ~~~~~~~~~~g~~l~~~yG~tE~~~~~~~~~~~~~~~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~  477 (510)
                      ++.+++... |+.+++.||+||++..++....+......++|+|+++++++|.. ++..       +.|||+++|+.++.
T Consensus       234 ~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~-------~~Gel~v~~~~~~~  304 (436)
T TIGR01923       234 PLIEEAQQY-GLPIYLSYGMTETCSQVTTATPEMLHARPDVGRPLAGREIKIKV-DNKE-------GHGEIMVKGANLMK  304 (436)
T ss_pred             HHHHHHHHh-CCceeeEecCCccchhccCcCccccccccCCCccCCCcEEEEEe-CCCC-------CceEEEEECCccch
Confidence            999988764 99999999999998765544333222223599999999999954 2221       67999999999999


Q ss_pred             cccCCchhhhhhhccCccccCCe-eeccCCccC
Q 010455          478 GYYKRPDLTEEVIVDGWFHTGKN-PWQYTFKKL  509 (510)
Q Consensus       478 gY~~~~~~~~~~~~~gw~~TGDl-~~d~dG~~~  509 (510)
                      ||+++++.+...+.+|||+|||+ ++|+||++.
T Consensus       305 gy~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~  337 (436)
T TIGR01923       305 GYLYQGELTPAFEQQGWFNTGDIGELDGEGFLY  337 (436)
T ss_pred             hhCCChhhhhhhhcCCCeeccceEEEcCCCCEE
Confidence            99998888877678899999999 999999764

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.

>PLN03051 acyl-activating enzyme; Provisional

Probab=100.00  E-value=2e-44  Score=373.99  Aligned_cols=344  Identities=17%  Similarity=0.101  Sum_probs=251.3

Q ss_pred             cCCchhHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCCh------hhHhhcCccCCCCccEEEEecC
Q 010455          109 GSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI------PSILSCLPRCCLYLKTIVSFAN  182 (510)
Q Consensus       109 ~~ns~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~v~~~~~  182 (510)
                      ++|++++++++|||+++|++++|+++.++.+++.++++.++++++|+++...      +.+.+....  .....++....
T Consensus         1 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~el~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~   78 (499)
T PLN03051          1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPLYSKVVEA--APAKAIVLPAA   78 (499)
T ss_pred             CCCcHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEecCceeeCCeeecchhhhhhc--ccceEEEEecc
Confidence            5899999999999999999999999999999999999999999999986421      111111111  11122222111


Q ss_pred             CChhhhhHhhhcCceeeeHHHHHHcCC-------CCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhh
Q 010455          183 VSSSQKKEAEELGVSCFSWEEFLQLGT-------LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQM  255 (510)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~  255 (510)
                      .... .   .........+++++....       .........++++++|+|||||||.||||++||++++.++......
T Consensus        79 ~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~  154 (499)
T PLN03051         79 GEPV-A---VPLREQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVESVTNILFSSGTTGEPKAIPWTHLSPLRCASDGWAH  154 (499)
T ss_pred             Cccc-C---CccccCcccHHHHHhhhccccccccccCCcccCCccceEEEEeCCCCCCCCceEEEccchHHHHHHHHHHh
Confidence            1000 0   000001224555542110       0111112356899999999999999999999999988776555444


Q ss_pred             hhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCcEEEEeCC--CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHH
Q 010455          256 FVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNK  333 (510)
Q Consensus       256 ~~~~~~~~~~~d~~~~~~pl~h~~g~~~~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~  333 (510)
                      +     ++..+|++++.+|++|..++..++.+++.|+++++.+.  ++..+++.|+++++|++.++|+++..|++...  
T Consensus       155 ~-----~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~i~~~~vt~~~~vP~~~~~l~~~~~--  227 (499)
T PLN03051        155 M-----DIQPGDVVCWPTNLGWMMGPWLLYSAFLNGATLALYGGAPLGRGFGKFVQDAGVTVLGLVPSIVKAWRHTGA--  227 (499)
T ss_pred             c-----CCCCCCEEEEccCcceeeehHHHHHHHHcCCEEEecCCCCCcHHHHHHHHHhCCcEEEeCHHHHHHHHhcCc--
Confidence            4     67889999999999999997777889999999998763  78899999999999999999999998864100  


Q ss_pred             hhccChhHHHHHHHHHHhhhhhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhc--CCCe
Q 010455          334 ISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS--GAPL  411 (510)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~--g~~l  411 (510)
                                                       ...+..+++        +||.+++||+++++++.+++++.+  ++.+
T Consensus       228 ---------------------------------~~~~~~~~~--------~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~  266 (499)
T PLN03051        228 ---------------------------------FAMEGLDWS--------KLRVFASTGEASAVDDVLWLSSVRGYYKPV  266 (499)
T ss_pred             ---------------------------------cccccCCch--------hheEEEecCCCCCHHHHHHHHHhcccccee
Confidence                                             001112233        899999999999999988887733  4789


Q ss_pred             eeeccccccccceecccCCCCccCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCc--cccccCCchhhhhh
Q 010455          412 TQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTL--FSGYYKRPDLTEEV  489 (510)
Q Consensus       412 ~~~yG~tE~~~~~~~~~~~~~~~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v--~~gY~~~~~~~~~~  489 (510)
                      ++.||+||++..++..........+++|+|.+|++++|+| ++|++++.|.++.|||+|+||.+  +.||||++. + +.
T Consensus       267 ~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~ivd-~~g~~~~~g~~~~Gel~v~g~~~~~~~gy~~~~~-~-~~  343 (499)
T PLN03051        267 IEYCGGTELASGYISSTLLQPQAPGAFSTASLGTRFVLLN-DNGVPYPDDQPCVGEVALAPPMLGASDRLLNADH-D-KV  343 (499)
T ss_pred             EeeeccccccceeecccccCCCCCccccCCCCCceEEEEC-CCCCCCCCCCCcceEEEEecCcCCCCccccCCcc-c-ce
Confidence            9999999987544332222222347899999999999999 88888877644689999999976  589998653 3 33


Q ss_pred             hccC----------ccccCCe-eeccCCccC
Q 010455          490 IVDG----------WFHTGKN-PWQYTFKKL  509 (510)
Q Consensus       490 ~~~g----------w~~TGDl-~~d~dG~~~  509 (510)
                      +.+|          ||+|||+ ++|+||++.
T Consensus       344 ~~~g~~~~~~~~~~~~~TGDlg~~d~dG~l~  374 (499)
T PLN03051        344 YYKGMPMYGSKGMPLRRHGDIMKRTPGGYFC  374 (499)
T ss_pred             eeecCCccccCCcceeecCCeEEECCCCcEE
Confidence            4344          6899999 999999875

>PRK07868 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.2e-43  Score=389.06  Aligned_cols=386  Identities=14%  Similarity=0.122  Sum_probs=277.9

Q ss_pred             CCCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHH
Q 010455           41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME  120 (510)
Q Consensus        41 ~~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~l  120 (510)
                      ...++.++|+++++++||++|+++.   +      +.+||+||.++++++|++|++.|+++||+|+|+++|+++++++++
T Consensus       445 ~~~sl~~ll~~~a~~~pd~~Al~~~---~------~~lTY~eL~~ra~rlA~~L~~~Gv~~Gd~VaI~~~n~~e~v~a~l  515 (994)
T PRK07868        445 TRISLGRIIAEQARDAPKGEFLLFD---G------RVHTYEAVNRRINNVVRGLIAVGVRQGDRVGVLMETRPSALVAIA  515 (994)
T ss_pred             CCccHHHHHHHHHHHCCCCeEEEeC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Confidence            3468999999999999999999865   3      579999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCceeee
Q 010455          121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFS  200 (510)
Q Consensus       121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  200 (510)
                      ||+++|++++|++|.   +++.++++.++++++|++.+....+.+.       ...+++++.........  ........
T Consensus       516 A~~~aGav~vpl~p~---~~l~~il~~s~~~~li~~~~~~~~~~~~-------~~~iiv~~~~~~~~~~~--~~~~~~~~  583 (994)
T PRK07868        516 ALSRLGAVAVLMPPD---TDLAAAVRLGGVTEIITDPTNLEAARQL-------PGRVLVLGGGESRDLDL--PDDADVID  583 (994)
T ss_pred             HHHhcCCEEEEeCCc---hhHHHHHhccCCeEEEEChHHHHHHHhc-------CceEEEecCCccccccC--Ccchhhhh
Confidence            999999999999984   6899999999999999987766554321       13444443211000000  00000011


Q ss_pred             HHHHHHcCCCCC---CCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHH
Q 010455          201 WEEFLQLGTLDC---ELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAH  277 (510)
Q Consensus       201 ~~~~~~~~~~~~---~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h  277 (510)
                      ++++.......+   ......++++++|+|| ||||.||++.++|.+...........+     .+..+|++++.+|++|
T Consensus       584 ~~~~~~~~~~~~~~~~~~~~~~dd~a~IiyT-gStgtpKpk~vt~~~~~~~~~~~~~~~-----~l~~~d~~L~~~Pl~h  657 (994)
T PRK07868        584 MEKIDPDAVELPGWYRPNPGLARDLAFIAFS-TAGGELVAKQITNYRWALSAFGTASAA-----ALDRRDTVYCLTPLHH  657 (994)
T ss_pred             hhhcCcccccCCcccCCCCCCCCccEEEEEe-CCCCCcCcEEEehHHHHHHHHhhhhhc-----CCCCCCeEEEecChHH
Confidence            111110000000   0112236889999998 588888888888877665554444444     7788999999999999


Q ss_pred             HHHHHHHHH-HHhcCcEEEEeCC-CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhh
Q 010455          278 IYDQIIETH-CIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGN  355 (510)
Q Consensus       278 ~~g~~~~l~-~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (510)
                      .+++...+. .+..|+++++.+. ++..+++.|+++++|+++++|+++..+++..                         
T Consensus       658 ~~gl~~~l~~~l~gG~~vvl~~~~~~~~~~~~I~~~~vT~~~~~Ps~l~~L~~~~-------------------------  712 (994)
T PRK07868        658 ESGLLVSLGGAVVGGSRIALSRGLDPDRFVQEVRQYGVTVVSYTWAMLREVVDDP-------------------------  712 (994)
T ss_pred             HhHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCc-------------------------
Confidence            999986554 5555666666554 9999999999999999999999999886510                         


Q ss_pred             cccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcC-CCeeeeccccccccceecccCCCCcc
Q 010455          356 MKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG-APLTQGYGLTESCSGCFTSLADVFNM  434 (510)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g-~~l~~~yG~tE~~~~~~~~~~~~~~~  434 (510)
                                  .....++        ++||.++  |+.+++++.+.+.+.++ +.+++.||+||++.+.. ...  ...
T Consensus       713 ------------~~~~~~~--------~slr~~~--g~gl~~~l~~~~~~~~~~~~l~~~YG~TE~~~~~~-~~~--~~~  767 (994)
T PRK07868        713 ------------AFVLHGN--------HPVRLFI--GSGMPTGLWERVVEAFAPAHVVEFFATTDGQAVLA-NVS--GAK  767 (994)
T ss_pred             ------------CCccCCC--------CceEEEe--cCCCCHHHHHHHHHHhCchheeeeeeccccccccc-ccC--CCC
Confidence                        0000111        2789776  33499999999999886 78999999999875433 221  223


Q ss_pred             CCccccccCCe-EEEEe-----------ecCCCCcCCCCCCCcceEEEecCCccccccCCchhhh--hhh--ccCccccC
Q 010455          435 IGTVGVPMTTV-EARLE-----------SVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTE--EVI--VDGWFHTG  498 (510)
Q Consensus       435 ~~svG~p~~g~-~i~iv-----------d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~--~~~--~~gw~~TG  498 (510)
                      ++++|+|+||+ +++|+           | ++|....+..|+.|||+++|+..    + +|+.+.  ..|  .+|||+||
T Consensus       768 ~~svG~p~pg~~~v~i~~~d~~~g~li~d-~~G~~~~~~~ge~Gel~~~~~~~----~-~p~~t~~~~~~~~~dgw~~TG  841 (994)
T PRK07868        768 IGSKGRPLPGAGRVELAAYDPEHDLILED-DRGFVRRAEVNEVGVLLARARGP----I-DPTASVKRGVFAPADTWISTE  841 (994)
T ss_pred             CcccCCccCCCCceeEEEecCcCCceeec-CCceEEEcCCCCceEEEEecCCC----C-ChhhhhHhcccccCCEEEecc
Confidence            48999999998 67664           3 33411122345899999999863    3 344332  234  37999999


Q ss_pred             Ce-eeccCCccC
Q 010455          499 KN-PWQYTFKKL  509 (510)
Q Consensus       499 Dl-~~d~dG~~~  509 (510)
                      |+ ++|+||++.
T Consensus       842 Dlg~~d~dG~l~  853 (994)
T PRK07868        842 YLFRRDDDGDYW  853 (994)
T ss_pred             ceEEEcCCCCEE
Confidence            99 999999875

>KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=1.5e-43  Score=355.72  Aligned_cols=404  Identities=19%  Similarity=0.225  Sum_probs=317.6

Q ss_pred             CCCHHH-HHHHHHhh-CCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHH
Q 010455           42 LESPWQ-FFCDSAKR-IPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM  119 (510)
Q Consensus        42 ~~sl~~-~l~~~a~~-~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~  119 (510)
                      ..++.+ .++++.+. .++++++++.   +...+....+||.|+.+++.++|..|.+.|+++||+|++++|+.+++++++
T Consensus        62 ~ln~~~n~~~~~~~~~~~~~~a~~~~---~~~~~~~~~~t~~el~~~v~~~a~~l~~~g~~kGD~V~~~mPm~~e~~ia~  138 (626)
T KOG1175|consen   62 FLNACYNCLDRHIKEKGGDKVAIIFE---GNEGGDTEVWTYKELLDQVVRLANVLRKCGLKKGDTVAIYMPMIPEAVIAM  138 (626)
T ss_pred             hhhhhHhhhhhhhhhcCCCCcEEEEE---ecCCCceEEEEHHHHHHHHHHHHHHHHhcCCCCCcEEEEeccCChHHHHHH
Confidence            344443 34444433 4889999887   433333344999999999999999999889999999999999999999999


Q ss_pred             HHHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHh---------hcCccCC---CCccEEEEecCCChhh
Q 010455          120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSIL---------SCLPRCC---LYLKTIVSFANVSSSQ  187 (510)
Q Consensus       120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~---------~~~~~~~---~~~~~v~~~~~~~~~~  187 (510)
                      |||.++|++.+++-..+++.++...+++++++++|+.+......+         ++.....   ......+.+....   
T Consensus       139 lA~~r~Gai~~~v~~~fs~~~l~~Rl~~~~~k~i~t~d~~~~~~k~i~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---  215 (626)
T KOG1175|consen  139 LACARIGAIHSSVFAGFSAKELLDRLQDSKAKVIITQDVVARGGKSINLKCIVLEALLLVSDKSRPVWLDLIVSRRN---  215 (626)
T ss_pred             HHHhhcCeEEEEeeccCCHHHHHHHHHhcCCCEEEEEeeeccCCCccchhhhHHHHhhcccccccccceeeEEeccc---
Confidence            999999999999999999999999999999999999875332211         1111000   0001111111110   


Q ss_pred             hhHhhhcCceeeeHHHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHH-hhhhhhhhhccccCCCC
Q 010455          188 KKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEV-LSVDQMFVVTGKVCSEE  266 (510)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~-~~~~~~~~~~~~~~~~~  266 (510)
                               ....++..+............+.+|+.+|+|||||||.||++.+++....-.+ ......+     .+.+.
T Consensus       216 ---------~d~~~~~~~~~a~~~~~~~~~~~edpl~IlfTSGtTg~PK~v~ht~~g~ll~~~~~~~~~~-----d~q~~  281 (626)
T KOG1175|consen  216 ---------RDLFWSLELKKASPEHPCVPVKAEDPLFILFTSGTTGKPKGVIHTTGGYLLGAALTSRYHF-----DLQPS  281 (626)
T ss_pred             ---------ccccHHHHhhhcCCCCCceecCccCceEEEecCCCCCCCCceeeccCcchHHHhhhcceec-----cCCCc
Confidence                     12345555555544444677789999999999999999999999988654444 4444444     88999


Q ss_pred             cEEEEecChHHHHHHHH-HHHHHhcCcEEEEeCC---CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHH
Q 010455          267 DTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG---DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSK  342 (510)
Q Consensus       267 d~~~~~~pl~h~~g~~~-~l~~l~~G~~~v~~~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~  342 (510)
                      |++++...+.|+.+.+. .+.+|++|+++++.+.   ++..+++.+.++++|++++.|+.++.+....            
T Consensus       282 dv~~~~~d~GWi~g~~~~~~gpl~~Ga~~vl~~g~p~~~~~~~~~v~k~~it~l~t~pt~~r~l~~~~------------  349 (626)
T KOG1175|consen  282 DVLWCASDLGWITGHSYVLYGPLLNGATVVLYEGPPFDPGRIWKILDKYKVTVLYTAPTAYRLLRRLG------------  349 (626)
T ss_pred             ceEEEecccCeeeccchhhhhhhhcCcEEEEEcCCCCChhhhhhhHhhcceEEEEeccHHHHHHHHhc------------
Confidence            99999999999999886 6669999999999875   8899999999999999999999999875421            


Q ss_pred             HHHHHHHHhhhhhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCC-Ceeeeccccccc
Q 010455          343 KLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGA-PLTQGYGLTESC  421 (510)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~-~l~~~yG~tE~~  421 (510)
                                             ......+.++        +||.+.++||+++++...++.+.++. +|.+.||+||+|
T Consensus       350 -----------------------~~~~~~~~~~--------sLk~~~S~Gepi~~~~~ew~~~~~~~~pv~e~~~qtEtG  398 (626)
T KOG1175|consen  350 -----------------------QEDVTSYSLK--------SLRTCGSVGEPINPEAWEWWKRVTGLDPIYETYGQTETG  398 (626)
T ss_pred             -----------------------cccccccccc--------eEEEEeecCccCCcchHHHHHHhcCccchhhceeeeccC
Confidence                                   1112222222        79999999999999999999999988 599999999999


Q ss_pred             cceecccCCC-CccCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEec--C-CccccccCCchhhhhhh---ccCc
Q 010455          422 SGCFTSLADV-FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRG--N-TLFSGYYKRPDLTEEVI---VDGW  494 (510)
Q Consensus       422 ~~~~~~~~~~-~~~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g--~-~v~~gY~~~~~~~~~~~---~~gw  494 (510)
                      +.++...... ...+++.|.|.+|+.+.|.| ++|++.+... +.|+|+++.  | +.+++||+|++....+.   ..|+
T Consensus       399 ~~~i~~~~g~~p~~pg~~~~p~~g~~v~i~d-e~g~~~~~~~-~~G~l~~~~~~P~~~~r~~~~n~erf~~~yf~k~pg~  476 (626)
T KOG1175|consen  399 GICITPKPGKLPIKPGSAGKPFPGYDVQILD-ENGNELPPST-GNGELRLKPPWPPGMFRTLWGNHERFRAAYFKKFPGY  476 (626)
T ss_pred             ceeeeccCCCCCcCccccCCCCCCcceEEEC-CCCCCcCCCC-ceeEEEEeCCCCccccccccCCHHHhhhhhcccCCce
Confidence            9998887777 56679999999999999999 7888887755 789999997  4 88999999999554444   4799


Q ss_pred             cccCCe-eeccCCccCC
Q 010455          495 FHTGKN-PWQYTFKKLM  510 (510)
Q Consensus       495 ~~TGDl-~~d~dG~~~~  510 (510)
                      |.|||. ++|+||++.|
T Consensus       477 y~tGD~~~rd~dGY~~i  493 (626)
T KOG1175|consen  477 YFTGDGGRRDEDGYYWI  493 (626)
T ss_pred             EEecCceEEcCCceEEE
Confidence            999999 9999998753

>KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism]

Probab=100.00  E-value=9.2e-43  Score=335.15  Aligned_cols=397  Identities=16%  Similarity=0.147  Sum_probs=302.6

Q ss_pred             CCCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHH
Q 010455           41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME  120 (510)
Q Consensus        41 ~~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~l  120 (510)
                      ...+++++|..+++++|+++|+++.   +..    +++||+|+.++++++|+.|...|++.||.||++++|.+|++..+|
T Consensus        75 ~~~ti~~~F~~~vrr~p~k~aii~~---~~~----~~~Tf~e~~~~s~~~A~~~~~~~l~~GD~VAL~men~pefv~lWl  147 (649)
T KOG1179|consen   75 ERRTIAELFLSQVRRQPDKPAIIYE---GPF----QSLTFAELDARSNRVANYLHAEGLKAGDVVALLMENRPEFVALWL  147 (649)
T ss_pred             cCCcHHHHHHHHHHhCCCccEEEEe---CCC----ceeeHHHHHHHHHHHHHHHHHhhcccCCEEEEecCCChhHHHHHH
Confidence            4589999999999999999999998   532    689999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCceeee
Q 010455          121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFS  200 (510)
Q Consensus       121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  200 (510)
                      +++++|++...||+++..+.|.+.++.++++.+|++.+....+.+..+......-.++..+.....         .+..+
T Consensus       148 GLaKlGv~tA~iNtNlR~~~LlHsi~~s~aralv~~~el~~~~~e~~~~l~~~~i~~~~~~~~~~~---------~g~~~  218 (649)
T KOG1179|consen  148 GLAKLGVITAFINTNLRGEPLLHSITVSGARALVVGPELLNALEEILPLLIKNGIHVFSLGPTSVP---------DGIES  218 (649)
T ss_pred             hHHhhCceeeeeccccccchhhhhhhhcCceEEEECHHHHHHHHhcchhhhhccceEEecCCCCCC---------chHHH
Confidence            999999999999999999999999999999999999998887777643322222223333222111         01122


Q ss_pred             HHHHHHcC-CCC---CCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChH
Q 010455          201 WEEFLQLG-TLD---CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLA  276 (510)
Q Consensus       201 ~~~~~~~~-~~~---~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~  276 (510)
                      +...++.. ..+   ......+-.++++.+|||||||.||+++++|..+......+...+     +.+++|+++..+|++
T Consensus       219 L~~~l~~~~~~~vp~~~~~~~~~~s~~lyIYTSGTTGLPKaAvith~r~~~~a~g~~~~~-----g~~~~DvvY~~lPLY  293 (649)
T KOG1179|consen  219 LLAKLSAAPKHPVPVSTRSGLTFRSPLLYIYTSGTTGLPKAAVITHLRYLQGAAGFYYVF-----GMTADDVVYTTLPLY  293 (649)
T ss_pred             HHHhhcccccCCCCcccCCCccccceeEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHh-----CCCccceEEEcchhH
Confidence            33333322 222   122344667889999999999999999999999988888777777     999999999999999


Q ss_pred             HHHHHHH-HHHHHhcCcEEEEeCC-CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhh
Q 010455          277 HIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLG  354 (510)
Q Consensus       277 h~~g~~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (510)
                      |..|.+. +..|+..|+++|+-.. +..++++...+|++|++..+-.+.+.|+.+                         
T Consensus       294 Hsaa~ilGi~~~l~~GaT~VlrkKFSAS~FW~DC~k~~~Tv~QYIGElcRYLl~~-------------------------  348 (649)
T KOG1179|consen  294 HSAAGILGIGGCLLHGATVVLRKKFSASNFWDDCRKYNVTVIQYIGELCRYLLNQ-------------------------  348 (649)
T ss_pred             HHHHHHHHHHHHHhcCceEEEecccchhhhHHHHHHhCCeeeehHHHHHHHHHcC-------------------------
Confidence            9998875 7889999999999875 999999999999999999998888888752                         


Q ss_pred             hcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCC-eeeeccccccccceecccCCCCc
Q 010455          355 NMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAP-LTQGYGLTESCSGCFTSLADVFN  433 (510)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~-l~~~yG~tE~~~~~~~~~~~~~~  433 (510)
                                  |..+.-        ..+.+|.++  |.-+.+++.+.|.++||.. |.+.||.||....... ...   
T Consensus       349 ------------p~~~~e--------r~HkVRla~--GNGLR~diW~~Fv~RFg~~~IgE~YgaTEgn~~~~N-~d~---  402 (649)
T KOG1179|consen  349 ------------PPSPEE--------RQHKVRLAY--GNGLRPDIWQQFVKRFGIIKIGEFYGATEGNSNLVN-YDG---  402 (649)
T ss_pred             ------------CCChhh--------cCceEEEEe--cCCCCchHHHHHHHHcCCCeEEEEeccccCcceeee-ecC---
Confidence                        111111        114788776  5558899999999999876 9999999997764332 221   


Q ss_pred             cCCcccc------ccCCeEEEEeec--------CCCCcCCCCCCCcceEEEe--c--C-CccccccCCchhhhhh-----
Q 010455          434 MIGTVGV------PMTTVEARLESV--------PEMGYDALSSVPRGEICLR--G--N-TLFSGYYKRPDLTEEV-----  489 (510)
Q Consensus       434 ~~~svG~------p~~g~~i~ivd~--------~~~~~~~~~~~~~Gei~v~--g--~-~v~~gY~~~~~~~~~~-----  489 (510)
                      ..|.+|+      -+--+++.-+|.        ++|-..++.+||+|.++-+  .  | .-|.||.++.+.+++.     
T Consensus       403 ~vGA~G~~~~~~~~l~p~~LIk~D~~t~E~iRd~~G~Ci~~~~GEpGlLv~~i~~k~P~~~F~GY~g~~~~t~kKl~rDV  482 (649)
T KOG1179|consen  403 RVGACGFMSRLLKLLYPFRLIKVDPETGEPIRDSQGLCIPCPPGEPGLLVGKIVQKNPLRSFLGYAGPKKATEKKLLRDV  482 (649)
T ss_pred             ccccccchhhhhhhccceEEEEecCCCCceeecCCceEEECCCCCCceEEEEeccCCchhhhccccCchhhhhhhhHHhh
Confidence            1133333      112222222231        4444456677899966544  2  2 2399999988777554     


Q ss_pred             h--ccCccccCCe-eeccCCccC
Q 010455          490 I--VDGWFHTGKN-PWQYTFKKL  509 (510)
Q Consensus       490 ~--~~gw~~TGDl-~~d~dG~~~  509 (510)
                      |  .|-||.|||+ ..|+.|+++
T Consensus       483 FkkGD~~f~tGDlLv~D~~GylY  505 (649)
T KOG1179|consen  483 FKKGDVYFNTGDLLVADELGYLY  505 (649)
T ss_pred             hccCcEEEeeCcEEEEecCCcEE
Confidence            4  3459999999 999999864

>PRK08308 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.8e-40  Score=336.57  Aligned_cols=299  Identities=17%  Similarity=0.158  Sum_probs=252.7

Q ss_pred             EEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEE
Q 010455           76 VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFV  155 (510)
Q Consensus        76 ~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~  155 (510)
                      +.+||+||.++++++|+.|. .|+++|++|+++++|+++++++++|++++|++++|+++..+.+++..+++.++++.+++
T Consensus         7 ~~~ty~el~~~~~~~a~~l~-~~~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~i~   85 (414)
T PRK08308          7 EEYSKSDFDLRLQRYEEMEQ-FQEAAGNRFAVCLKDPFDIITLVFFLKEKGASVLPIHPDTPKEAAIRMAKRAGCHGLLY   85 (414)
T ss_pred             ceecHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHHCCeEEEecCCCCCHHHHHHHHHhCCCCEEEe
Confidence            57999999999999999985 68999999999999999999999999999999999999999999999999999999998


Q ss_pred             cCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCceeeeHHHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCC
Q 010455          156 QENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEP  235 (510)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~p  235 (510)
                      ++....                  ..                               ......++++++++|||||||.|
T Consensus        86 ~~~~~~------------------~~-------------------------------~~~~~~~~~~~~i~~TSGtTG~P  116 (414)
T PRK08308         86 GESDFT------------------KL-------------------------------EAVNYLAEEPSLLQYSSGTTGEP  116 (414)
T ss_pred             cCcccc------------------cc-------------------------------cCCCCCCCCceEEEECCCCCCCC
Confidence            753100                  00                               00123467899999999999999


Q ss_pred             ceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHH-HHHHHhcCcEEEEeCC-CHhhHHHHHhhhcC
Q 010455          236 KGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKP  313 (510)
Q Consensus       236 K~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~  313 (510)
                      |+|++||+++.+++..+...+     ....+|+++..+|++|.+|+.. ++.++..|+++++.+. ++..+++.++++++
T Consensus       117 Kgv~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~  191 (414)
T PRK08308        117 KLIRRSWTEIDREIEAYNEAL-----NCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIITNKNPKFALNILRNTPQ  191 (414)
T ss_pred             cEEEEehHhHHHHHHHHHHhh-----CCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecCCCCHHHHHHHHHHhCC
Confidence            999999999999888877776     7788899999999999999864 7789999999988775 99999999999999


Q ss_pred             cEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecC
Q 010455          314 TMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAA  393 (510)
Q Consensus       314 t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~  393 (510)
                      |+++++|.++..+.+...                                      ..           .+++.+++||+
T Consensus       192 t~~~~~P~~~~~l~~~~~--------------------------------------~~-----------~~l~~~~~~G~  222 (414)
T PRK08308        192 HILYAVPLMLHILGRLLP--------------------------------------GT-----------FQFHAVMTSGT  222 (414)
T ss_pred             eEEEcCHHHHHHHHhcCC--------------------------------------cc-----------ccccEEEEccC
Confidence            999999999998864210                                      00           16788999999


Q ss_pred             CCCHHHHHHHHHhcCCCeeeeccccccccceecccCCCCccCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecC
Q 010455          394 PLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGN  473 (510)
Q Consensus       394 ~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~~~~~~~~~~~~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~  473 (510)
                      ++++++.+.+++. +.++++.||+||++.+....  + ...++++|+|+|++++++.+ ++        ++.|||++++.
T Consensus       223 ~l~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~--~-~~~~~~~G~p~~~~~~~~~~-~~--------~~~gel~v~~~  289 (414)
T PRK08308        223 PLPEAWFYKLRER-TTYMMQQYGCSEAGCVSICP--D-MKSHLDLGNPLPHVSVSAGS-DE--------NAPEEIVVKMG  289 (414)
T ss_pred             CCCHHHHHHHHHh-CChhhhccCccccCCeeecC--C-CCCCCccCccCCCeEEEEec-CC--------CCCceEEEEcC
Confidence            9999999999886 67899999999998644321  1 22347899999999999976 32        25799999852


Q ss_pred             CccccccCCchhhhhhhccCccccCCe-eeccCCccC
Q 010455          474 TLFSGYYKRPDLTEEVIVDGWFHTGKN-PWQYTFKKL  509 (510)
Q Consensus       474 ~v~~gY~~~~~~~~~~~~~gw~~TGDl-~~d~dG~~~  509 (510)
                                        ++||+|||+ ++|+||++.
T Consensus       290 ------------------~~~~~TGDl~~~~~dg~l~  308 (414)
T PRK08308        290 ------------------DKEIFTKDLGYKSERGTLH  308 (414)
T ss_pred             ------------------CceEECCceEEECCCccEE
Confidence                              579999999 999999754

>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=1e-34  Score=311.10  Aligned_cols=378  Identities=22%  Similarity=0.241  Sum_probs=304.6

Q ss_pred             CCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHH
Q 010455           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (510)
Q Consensus        42 ~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA  121 (510)
                      ..++.+.|.+.+.+.|+++|+.+.   +      ..+||+++..+++++|+.|.+.|+.++++|+++.+.+.+++++++|
T Consensus       226 ~~~i~~~f~~~a~~~p~~~a~~~~---~------~~lty~el~~~a~~la~~l~~~g~~~~~~V~i~~~rs~~~i~~~l~  296 (642)
T COG1020         226 RLTIHLLFEEQAATTPDAVALVRG---G------QQLTYAELDARANRLARLLISLGVGPGETVAILADRSLELVVALLA  296 (642)
T ss_pred             cchHHHHHHHHHHhCCCceeEecC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCHHHHHHHHH
Confidence            468999999999999999888764   3      5799999999999999999999999999999999889999999999


Q ss_pred             HHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCceeeeH
Q 010455          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW  201 (510)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  201 (510)
                      ++++|+.++|++|..+.+.+..+++.++++.+++.........        .... +..+..                ..
T Consensus       297 ilkaG~~yvP~d~~~P~~r~~~~l~~~~~~~~~~~~~~~~~~~--------~~~~-~~~~~~----------------~~  351 (642)
T COG1020         297 VLKAGAAYVPLDPLYPAERLAYILEDSRPTLLLTQAHLRVDDV--------GLPG-LALDDA----------------LS  351 (642)
T ss_pred             HHhcCCeEecCCCCChHHHHHHHHhhcCccEEEeccccccccc--------cCCc-cccccc----------------cc
Confidence            9999999999999999999999999999999999833221100        0000 010000                00


Q ss_pred             HHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHH
Q 010455          202 EEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ  281 (510)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~  281 (510)
                      .    .....+......+++.+|++|||||||.||||.++|+++.+...+....+     ..+..|+++...++.+....
T Consensus       352 ~----~~~~~~~~~~~~~~~~ayiiytsgstg~Pkgv~~~h~~~~~~~~~~~~~~-----~~~~~d~~l~~~s~~fD~~~  422 (642)
T COG1020         352 E----IPDTDPIPQALLGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARF-----GLDADDRVLALASLSFDASV  422 (642)
T ss_pred             c----CCccCcccccCCCCCeEEEEEccCCCCCCCCceecCHHHHHHHHHHHHhc-----CCCcccEEeecCCcccchhH
Confidence            0    00001112234568999999999999999999999999999888877777     88899999999999888888


Q ss_pred             HHHHHHHhcCcEEEEeCC----CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhcc
Q 010455          282 IIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMK  357 (510)
Q Consensus       282 ~~~l~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (510)
                      ..++.++..|+++++.+.    ++..+.+.+.++++|++..+|.++..++........                      
T Consensus       423 ~~~f~~l~~G~~l~~~~~~~~~~~~~l~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~----------------------  480 (642)
T COG1020         423 FEIFGALLEGARLVLAPALLQVDPAALLELLEAQGITVLLLVPLLLRLLLLAALAPDL----------------------  480 (642)
T ss_pred             HHHHHHHhCCCEEEecCccccCCHHHHHHHHHHcCCEEEEecHHHHHHHHhchhhccc----------------------
Confidence            889999999999998764    899999999999999999999999998752000000                      


Q ss_pred             cCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhc--CCCeeeeccccccccceecccCCCCcc-
Q 010455          358 KGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS--GAPLTQGYGLTESCSGCFTSLADVFNM-  434 (510)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~--g~~l~~~yG~tE~~~~~~~~~~~~~~~-  434 (510)
                                      ..     ....+|.+++||+.++..+...+....  ...+.+.||.||+.............. 
T Consensus       481 ----------------~~-----~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~l~~~ygpTe~~~~~~~~~~~~~~~~  539 (642)
T COG1020         481 ----------------IS-----PCERLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEATLDAPSFPISAELES  539 (642)
T ss_pred             ----------------cC-----CcccccEEEEcCCCCCHHHHHHHHHhccccceEeeccCccHHhhheeeEEcccccCC
Confidence                            00     001489999999999999998877665  467999999999665544333222111 


Q ss_pred             CCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhhcc-CccccCCe-eeccCCcc
Q 010455          435 IGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVD-GWFHTGKN-PWQYTFKK  508 (510)
Q Consensus       435 ~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~-gw~~TGDl-~~d~dG~~  508 (510)
                      ...+|+|+++..+.|.| ..++.++.+  ..||+++.|.++..||+++|+.+.+.|.. .+|+|||+ +...||..
T Consensus       540 ~~piG~p~~n~~~~ild-~~~~~~p~g--v~gel~i~g~~~a~gy~~~p~lt~~~f~~~~~y~tgD~~r~~~dg~~  612 (642)
T COG1020         540 RVPIGRPVANTQLYILD-QGLRPLPLG--VPGELYIAGLGLALGYLNRPDLTAERFIALRLYRTGDLARPLADGAL  612 (642)
T ss_pred             CCCcceeeCCCeEEEEC-CCCCcCCCC--CCeeeEECCcchhhhhcCChhhhHHHhhhccCccCCCeeeECCCCeE
Confidence            35799999999999999 888888888  78999999999999999999999999944 59999999 99999864

>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=99.96  E-value=3.2e-28  Score=242.09  Aligned_cols=212  Identities=27%  Similarity=0.380  Sum_probs=170.3

Q ss_pred             CCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCcEEE
Q 010455          216 PKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIG  295 (510)
Q Consensus       216 ~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~l~~l~~G~~~v  295 (510)
                      ...++++++++|||||||.||+|+++|+++...+......+       ...++++..+|++|..++...+.++..|++++
T Consensus        31 ~~~~~d~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~-------~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~v  103 (358)
T PRK07824         31 EPIDDDVALVVATSGTTGTPKGAMLTAAALTASADATHDRL-------GGPGQWLLALPAHHIAGLQVLVRSVIAGSEPV  103 (358)
T ss_pred             CCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHhcc-------CCCCeEEEECChHHHHHHHHHHHHHHcCCeEE
Confidence            34568999999999999999999999999998887654433       34578899999999999988888999999988


Q ss_pred             EeC----CCHhhHHHHHhhhc--CcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhcccCCCCCCchhhH
Q 010455          296 FWR----GDVRYLMEDIQELK--PTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLL  369 (510)
Q Consensus       296 ~~~----~~~~~~~~~i~~~~--~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (510)
                      +..    .++..+++.+++++  .++...+|..+..++...                                     . 
T Consensus       104 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~l~~~~~~~-------------------------------------~-  145 (358)
T PRK07824        104 ELDVSAGFDPTALPRAVAELGGGRRYTSLVPMQLAKALDDP-------------------------------------A-  145 (358)
T ss_pred             ecCcCCCcCHHHHHHHHHHhCCCceEEEecHHHHHHHHhCc-------------------------------------c-
Confidence            732    28999999999998  556667787776554310                                     0 


Q ss_pred             HHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeeccccccccceecccCCCCccCCccccccCCeEEEE
Q 010455          370 DSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARL  449 (510)
Q Consensus       370 ~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~~~~~~~~~~~~~~svG~p~~g~~i~i  449 (510)
                      ...++        .++|.+++||+++++++.+++.+. ++++++.||+||++..+.           ..|+|++++++++
T Consensus       146 ~~~~~--------~~l~~i~~gG~~l~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~-----------~~G~~~~g~~v~i  205 (358)
T PRK07824        146 ATAAL--------AELDAVLVGGGPAPAPVLDAAAAA-GINVVRTYGMSETSGGCV-----------YDGVPLDGVRVRV  205 (358)
T ss_pred             ccCCc--------ccceEEEECCCCCCHHHHHHHHhc-CCcEEecccCCccCCCcC-----------cCceeCCCCEEEe
Confidence            00011        289999999999999999988764 999999999999875432           3589999999998


Q ss_pred             eecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhh-ccCccccCCe-eeccCCccC
Q 010455          450 ESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGKN-PWQYTFKKL  509 (510)
Q Consensus       450 vd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~gw~~TGDl-~~d~dG~~~  509 (510)
                      .+              |||+++|+.++.||+++++.+  .| .+|||+|||+ ++ +||++.
T Consensus       206 ~~--------------Gei~v~g~~~~~gY~~~~~~~--~~~~~g~~~TGDl~~~-~~g~l~  250 (358)
T PRK07824        206 ED--------------GRIALGGPTLAKGYRNPVDPD--PFAEPGWFRTDDLGAL-DDGVLT  250 (358)
T ss_pred             cC--------------CEEEEecCccccccCCCcccc--cccCCCceecccEEEE-eCCEEE
Confidence            44              999999999999999988743  34 6889999999 98 777653

>TIGR03089 conserved hypothetical protein TIGR03089

Probab=99.95  E-value=7e-26  Score=208.13  Aligned_cols=222  Identities=13%  Similarity=0.069  Sum_probs=163.5

Q ss_pred             HHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHh-CCCCCCCEEEEEcCCchhHHHHHHHHHhcCC
Q 010455           49 FCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRS-RGVNPGDRCGIYGSNCPEWIIAMEACNSQAI  127 (510)
Q Consensus        49 l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~-~gv~~gd~Vai~~~ns~~~~~~~lA~~~~G~  127 (510)
                      |...++++|+++|+++.   ++..+..+++||+|+.++++++|..|++ .|+++||+|+++++|+++++++++||+++|+
T Consensus         2 ~~~~~~~~p~~~al~~~---~~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~Gv~~GdrV~i~~~n~~~~~~~~~a~~~~G~   78 (227)
T TIGR03089         2 LSPLLAADPASPRLTFY---DDATGERVELSAATLANWVAKTANLLQDELDAEPGSRVALDLPAHWQTAVWLLAAWSTGV   78 (227)
T ss_pred             hhhhhhhCCCCcEEEEE---cCCCCeeEEEEHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCC
Confidence            56788899999999865   3322123579999999999999999998 7999999999999999999999999999999


Q ss_pred             eEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCceeeeHHHHHHc
Q 010455          128 TYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQL  207 (510)
Q Consensus       128 ~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (510)
                      +++|++             .+++++++++.+....+. .     .  +.++.+.+....... .......+.++.+.+..
T Consensus        79 v~vp~n-------------~s~a~~~v~~~~~~~~~~-~-----~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  136 (227)
T TIGR03089        79 EVVLAG-------------DPDADVVVTGPDRLAAAA-G-----S--GEVVALSLDPLGRRV-AGELPPGVIDFAPEVRV  136 (227)
T ss_pred             EEEeCC-------------CCCCCEEEeCcchhhhcc-c-----C--CceEEEeccccccCC-CCCCCCcccchhhhhhc
Confidence            999995             689999999988766542 1     1  223332110000000 00001122355555543


Q ss_pred             CCCCCCCC-CCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHH-HH
Q 010455          208 GTLDCELP-PKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII-ET  285 (510)
Q Consensus       208 ~~~~~~~~-~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~-~l  285 (510)
                      ........ ...++|++.++||||+         +|++++.+.    ..+     +++++|+++ .+|++|++|+.. ++
T Consensus       137 ~~~~~~~~~~~~~~D~a~l~yTsg~---------~~~~~~~~~----~~~-----~l~~~D~~l-~~Pl~H~~gl~~~~~  197 (227)
T TIGR03089       137 HGDQFAPYEPPDATAPALVAGGGEW---------TGAELVAAA----RAA-----GLPPGDRVL-VLAWTDLEDFLATLL  197 (227)
T ss_pred             cCCCCCCCCCCCCCcceeeeccccc---------cHHHHHHHH----hhc-----CCCCCCeEE-ecCCCchHHHHHHHH
Confidence            21111112 3466899999999975         666666655    333     778999999 999999999974 88


Q ss_pred             HHHhcCcEEEEeC-CCHhhHHHHHhhhcCc
Q 010455          286 HCIHKGCSIGFWR-GDVRYLMEDIQELKPT  314 (510)
Q Consensus       286 ~~l~~G~~~v~~~-~~~~~~~~~i~~~~~t  314 (510)
                      .+++.|+++++.+ +++..+++.|+++|+|
T Consensus       198 ~~l~~G~t~v~~~rFd~~~~l~~i~~~~vT  227 (227)
T TIGR03089       198 APLAAGGSLVLVTHPDPARLDQIAETERVT  227 (227)
T ss_pred             HHhccCceEEEecCCCHHHHHHHHHhhcCC
Confidence            8999999998886 4999999999999987

This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501.

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=99.94  E-value=4.7e-25  Score=226.07  Aligned_cols=401  Identities=11%  Similarity=0.075  Sum_probs=274.6

Q ss_pred             CCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhC-CCCCCCEEEEEcCCchhHHHHHHH
Q 010455           43 ESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSR-GVNPGDRCGIYGSNCPEWIIAMEA  121 (510)
Q Consensus        43 ~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~-gv~~gd~Vai~~~ns~~~~~~~lA  121 (510)
                      .++.|+|+++++.+||.+|+...   +..+....++||.+|..+|.+++..|... .+++||.|+++++++.|++++++|
T Consensus       770 ~~ile~Lq~R~a~tp~~~a~~~~---n~~~~~~~~~Tw~~f~krva~i~~~l~~k~~lk~Gd~V~Lmy~~sie~vaa~~~  846 (1363)
T KOG3628|consen  770 LTILEILQWRAAKTPDHIAFTTL---NARGATKKTLTWAQFHKRVARIAEYLQDKGHLKAGDHVVLMYPPSIEFVAAIYA  846 (1363)
T ss_pred             HHHHHHHHHHhhcCCCceEEEEe---ccCCcccceeEHHHHHHHHHHHHHHHHhcccCCCCCeEEEEcCChHHHHHHHHH
Confidence            67999999999999999999987   77666778999999999999999999977 689999999999999999999999


Q ss_pred             HHhcCCeEEEecCCCC------HHHHHHHHHhcCccEEEEcCCChhhHhhcCc---cCCCCccEEEEecCCChhhhhHhh
Q 010455          122 CNSQAITYVPLYDTLG------ANAVEFIINHAEVSIAFVQENKIPSILSCLP---RCCLYLKTIVSFANVSSSQKKEAE  192 (510)
Q Consensus       122 ~~~~G~~~v~l~~~~~------~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~  192 (510)
                      |+.+|++++|+.|...      -..+..+++.+++..|+++.+....+.+--.   .....+..++++.+.....     
T Consensus       847 Cly~GliPIpv~p~~~s~l~~~l~~~~~ii~~~kv~ailv~~~v~~lLrsr~~s~~~~~s~~p~i~~~~~~~~t~-----  921 (1363)
T KOG3628|consen  847 CLYLGLIPIPVPPPHASNLIEDLPTFRMIIKVYKVAAILVDQKVLKLLRSREASAHVDQSAIPLILVLPKLPETI-----  921 (1363)
T ss_pred             HHhcCeeeeccCCccHHhhhhhhHHHHHHHHHhhhheEEecHHHHHHHhhhhHHHHhhhhcchhhhcccccchhh-----
Confidence            9999999999988543      2368889999999999999876554432110   0112222233332221100     


Q ss_pred             hcCceeeeHHHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEe
Q 010455          193 ELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSF  272 (510)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~  272 (510)
                           .....+..+.. ...+....+.+.+|++-|.--++|.--++.++|.++++..+.....+     .+.+..-++..
T Consensus       922 -----~k~~~~~~k~~-~~~~~g~~~k~~~a~v~~~~~~dg~l~~~~msHsslla~Ck~iKe~~-----~l~~~rpl~~~  990 (1363)
T KOG3628|consen  922 -----RKRKKNIKKLN-TPTPPGLNNKETPALVWFNVSTDGMLIGVKMSHSSLLAFCKIIKETC-----QLYKSRPLLGC  990 (1363)
T ss_pred             -----hhhhhhhhccC-CCCCccccCCCceEEEEEEecCCcceeeeeccHHHHHHHHHHHHHHH-----ccccCCceEEE
Confidence                 00011111111 11122234568899999999999999999999999999999999988     66566666666


Q ss_pred             cChHHHHHHH-HHHHHHhcCcEEEEeCC-----CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHH
Q 010455          273 LPLAHIYDQI-IETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFE  346 (510)
Q Consensus       273 ~pl~h~~g~~-~~l~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~  346 (510)
                      .+.+.+.|+. ++|..+|.|.+.++++.     ++..|++.+.++++.-++.+-..+....+.+.+.-            
T Consensus       991 ~~~~sGlgf~~wcLlgVysGh~T~Li~p~~l~nnpsLll~~i~~~kvkDt~~~~~tln~c~~~l~t~~------------ 1058 (1363)
T KOG3628|consen  991 SSPYSGLGFNHWCLLGVYSGHPTLLISPMDLENNPSLLLQIISQYKVKDTYPTYSTLNLCQKGLETSV------------ 1058 (1363)
T ss_pred             ecCccchhHHHHHHHHHHcCCceeecCHHHhhcCHHHHHHHHhcccccccchhHHHHHHHHhcccccc------------
Confidence            6666667765 79999999999888764     99999999999999998887777777655333221            


Q ss_pred             HHHHhhhhhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhc---CC---Ceeeecccccc
Q 010455          347 FAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS---GA---PLTQGYGLTES  420 (510)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~---g~---~l~~~yG~tE~  420 (510)
                                          +.+......       .+-..++..-+.....+.+.|.+.|   |.   .+-..|+.--.
T Consensus      1059 --------------------enl~~~gnn-------~s~s~vv~~~~RPr~ali~sf~klfa~igLsp~avStsys~r~N 1111 (1363)
T KOG3628|consen 1059 --------------------ENLSKRGNN-------TSSSIVVPAEERPRIALIASFKKLFAAIGLSPRAVSTSYSSRVN 1111 (1363)
T ss_pred             --------------------chhhhhhcc-------cccceeeecCCccHHHHHHHHHHHHHHcCCChhhhcccccccCC
Confidence                                111111110       0112233334455556666666554   22   24445554443


Q ss_pred             ccceecccCCCC----------------c----------cCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCC
Q 010455          421 CSGCFTSLADVF----------------N----------MIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNT  474 (510)
Q Consensus       421 ~~~~~~~~~~~~----------------~----------~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~  474 (510)
                      -.+|.....+..                +          .....|...+++++.|++ |+.. .+++.++.||||++|.+
T Consensus      1112 p~Ic~r~~sg~~Pt~~y~D~raLR~grV~~ve~~ap~~l~L~dSG~~~~~~~i~Ivn-PEtk-~pc~dge~GEIW~~S~h 1189 (1363)
T KOG3628|consen 1112 PFICLRSYSGPEPTTVYLDARALREGRVRLVEVGAPHSLLLYDSGKLPVYTDIAIVN-PETK-GPCRDGELGEIWVNSAH 1189 (1363)
T ss_pred             hHhhhccccCCCCcceeechhhhhccceeeeecCCCCccccccCCcccccceeEEeC-Cccc-cccccCCcceEEecccc
Confidence            333333211110                0          011248888999999999 5544 45555699999999998


Q ss_pred             ccccccCCchhh-hhhh----------ccCccccCCe-eec
Q 010455          475 LFSGYYKRPDLT-EEVI----------VDGWFHTGKN-PWQ  503 (510)
Q Consensus       475 v~~gY~~~~~~~-~~~~----------~~gw~~TGDl-~~d  503 (510)
                      -+.+|++..+.. ...|          ..+|.||||+ ++.
T Consensus      1190 nA~~~~~~~d~~~~~~fn~rl~~g~~~~~sy~RTG~LGFl~ 1230 (1363)
T KOG3628|consen 1190 NASCSFTIGDELRSNHFNARLSSGDLLGKSYARTGDLGFLR 1230 (1363)
T ss_pred             ccccccccCchhhhhhhhhhccccccccccceeeeeeeeee
Confidence            888887653221 1122          1359999999 863

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=99.91  E-value=4e-23  Score=209.79  Aligned_cols=224  Identities=17%  Similarity=0.139  Sum_probs=162.4

Q ss_pred             CCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHH-HHHHHHHhcCcEEEE
Q 010455          218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ-IIETHCIHKGCSIGF  296 (510)
Q Consensus       218 ~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~-~~~l~~l~~G~~~v~  296 (510)
                      ..++++.+++||||||.||+|.++|.++..........+..  .++..+|++++..+..+..+. ...+.++..|++++.
T Consensus        73 ~~~~~~~~~~TSGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~--~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  150 (422)
T TIGR02155        73 PREQVVRIHASSGTTGKPTVVGYTQNDIDTWSSVVARSIRA--AGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVP  150 (422)
T ss_pred             ChHHcEEEEECCCCCCCCeEeccCHHHHHHHHHHHHHHHHH--cCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEe
Confidence            45678889999999999999999999987665443332211  167788999887665443332 235557888999887


Q ss_pred             eCC-CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhcccCCCCCCchhhHHHHHHH
Q 010455          297 WRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFS  375 (510)
Q Consensus       297 ~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (510)
                      .+. ++..+++.|++++||+++++|+++..|++.....-                                  .+ ... 
T Consensus       151 ~~~~~~~~~~~~i~~~~~t~l~~~Ps~l~~L~~~~~~~~----------------------------------~~-~~~-  194 (422)
T TIGR02155       151 ISGGQTEKQVQLIQDFKPDIIMVTPSYMLNLLEELKRMG----------------------------------ID-PAQ-  194 (422)
T ss_pred             cCCCCHHHHHHHHHHHCCCEEEEcHHHHHHHHHHHHHcC----------------------------------CC-ccc-
Confidence            654 78999999999999999999999999876432110                                  00 000 


Q ss_pred             HHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeecccccccc-ceecccCCCCccCCcccccc--CCeEEEEeec
Q 010455          376 KIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCS-GCFTSLADVFNMIGTVGVPM--TTVEARLESV  452 (510)
Q Consensus       376 ~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~-~~~~~~~~~~~~~~svG~p~--~g~~i~ivd~  452 (510)
                             .++|.+++||+++++++.+.+++.||+++++.||+||+++ .+......     ...|.++  ++..++|+|.
T Consensus       195 -------~~lr~i~~~ge~l~~~~~~~i~~~~g~~v~~~YG~tE~~~~~~~~~~~~-----~~~g~~~~~~~~~~eivd~  262 (422)
T TIGR02155       195 -------TSLQVGIFGAEPWTNAMRKEIEARLGMKATDIYGLSEVIGPGVAMECVE-----TQDGLHIWEDHFYPEIIDP  262 (422)
T ss_pred             -------CceEEEEEeCCcCCHHHHHHHHHHhCCceEecccchhhcCCceeecccc-----cCCCceEecCeeEEEEECC
Confidence                   2799999999999999999999999999999999999853 22221111     1123333  3577789994


Q ss_pred             CCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhhccCccccCCe-eeccC
Q 010455          453 PEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGKN-PWQYT  505 (510)
Q Consensus       453 ~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDl-~~d~d  505 (510)
                      +++.+++.|  +.|||++++.            +.+.|..+||+|||+ +++++
T Consensus       263 ~~g~~v~~G--e~Gelvvt~~------------~~~~~p~~ry~TGDl~~~~~~  302 (422)
T TIGR02155       263 HTGEVLPDG--EEGELVFTTL------------TKEALPVIRYRTRDLTRLLPG  302 (422)
T ss_pred             CCCCCCCCC--CeeEEEEecC------------CccccceeeEEcCcEEEEECC
Confidence            466666655  8999999973            233455789999999 98875

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family

Probab=99.89  E-value=2.6e-22  Score=199.23  Aligned_cols=193  Identities=16%  Similarity=0.174  Sum_probs=146.4

Q ss_pred             CCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccC--CCCcEEEEecChHHHHHHHH-HHHHHhcCcEEEE
Q 010455          220 TNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVC--SEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGF  296 (510)
Q Consensus       220 ~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~--~~~d~~~~~~pl~h~~g~~~-~l~~l~~G~~~v~  296 (510)
                      +..++++|||||||.||+|++||+++.+.+..+...+     +.  .+.|++++.+|++|.+|+.+ ++.++..|+++++
T Consensus        95 ~~~~~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~  169 (386)
T TIGR02372        95 PTARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKIL-----GERPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQ  169 (386)
T ss_pred             CCceEEEECCCCCCCCceeEeeHHHHHHHHHHHHHHh-----CcCCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEe
Confidence            4578999999999999999999999999888877766     44  34468999999999999864 6778999999988


Q ss_pred             eCC-CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhcccCCCCCCchhhHHHHHHH
Q 010455          297 WRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFS  375 (510)
Q Consensus       297 ~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (510)
                      .+. ++..+++.++.+  |+++++|.+++.+.+.                                     +    .++ 
T Consensus       170 ~~~~~~~~~l~~i~~~--t~~~~~P~~l~~l~~~-------------------------------------~----~~l-  205 (386)
T TIGR02372       170 LAAAPASGIMRHARPG--DLIVGTPFIWEQLADL-------------------------------------D----YRL-  205 (386)
T ss_pred             cCCCChHHHHHhhccC--CEEEECcHHHHHHHhh-------------------------------------C----cCC-
Confidence            764 778888887654  8999999999988641                                     0    011 


Q ss_pred             HHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCC-CeeeeccccccccceecccCCCCccCCccccccCCeEEEEeecCC
Q 010455          376 KIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGA-PLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPE  454 (510)
Q Consensus       376 ~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~-~l~~~yG~tE~~~~~~~~~~~~~~~~~svG~p~~g~~i~ivd~~~  454 (510)
                             +++|. ++||+++++++.+.+++. +. .+++.||+||+++++....      ++..|+|+|+.++++ +  +
T Consensus       206 -------~slr~-i~gGa~l~~~l~~~~~~~-g~~~v~~~YG~TEt~~i~~~~~------~~~~~~~~p~~~~~~-~--~  267 (386)
T TIGR02372       206 -------PGVVG-VSSGAPSTAATWRCLLAA-GLARLLEVYGATETGGIGLREA------PDDPFRLLPDLACFA-D--T  267 (386)
T ss_pred             -------Cccee-EecCCCCCHHHHHHHHHh-cccchhheeccccccccccccC------CCCCcccCCCccccC-C--C
Confidence                   25665 688999999999999886 64 6999999999987554321      134678888876543 1  1


Q ss_pred             CCcCCCCCCCcceEEEecCCccccccCCchhhhhhhccCccccCCe-eeccCCccCC
Q 010455          455 MGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGKN-PWQYTFKKLM  510 (510)
Q Consensus       455 ~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDl-~~d~dG~~~~  510 (510)
                      +.       +      .|+                  ..|++|||+ ++|++|++.+
T Consensus       268 ~~-------~------~g~------------------~~~~~tgD~g~~d~~G~l~i  293 (386)
T TIGR02372       268 LS-------S------AGL------------------ARRLDLQDRLAWDKDGGFTI  293 (386)
T ss_pred             cc-------C------CCc------------------cceeecCceEEEcCCCcEEE
Confidence            11       0      022                  126899999 9999998753

Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=99.82  E-value=6.2e-19  Score=179.38  Aligned_cols=199  Identities=18%  Similarity=0.153  Sum_probs=146.6

Q ss_pred             CCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHH-HHHHHhcCcEEEE
Q 010455          218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGF  296 (510)
Q Consensus       218 ~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~-~l~~l~~G~~~v~  296 (510)
                      ..++++.+.+||||||.||+|.+||.++........+.+..  .++.++|+++...|+.+..+... .+.+...|++++.
T Consensus        84 ~~~~i~~i~~TSGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~--~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~  161 (445)
T TIGR03335        84 DWKDIYTIHETSGTSGTPKSFFLTWDDWKRYAEKYARSFVS--QGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIP  161 (445)
T ss_pred             CHHHeEEEEeCCCCCCCcceeeecHHHHHHHHHHHHHHHHH--cCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEc
Confidence            45678889999999999999999999988776655443311  26778899999988877666543 4556788887654


Q ss_pred             eCCCHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhcccCCCCCCchhhHHHHHHHH
Q 010455          297 WRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSK  376 (510)
Q Consensus       297 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (510)
                      . ......++.++++++|++.++|+.+..+++.+....                                  .+. ..  
T Consensus       162 ~-~~~~~~~~~i~~~~~t~l~~~ps~ll~La~~~~~~g----------------------------------~~~-~~--  203 (445)
T TIGR03335       162 E-GKCTFPIRIIESYRPTGIVASVFKLLRLARRMKAEG----------------------------------IDP-AE--  203 (445)
T ss_pred             C-CchhHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcC----------------------------------CCc-cc--
Confidence            3 344567899999999999999998887765432210                                  000 00  


Q ss_pred             HHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeeccccccccceecccCCCCccCCccccc--cCCeEEEEeecCC
Q 010455          377 IREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVP--MTTVEARLESVPE  454 (510)
Q Consensus       377 ~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~~~~~~~~~~~~~~svG~p--~~g~~i~ivd~~~  454 (510)
                            .++|.+++||+++++++.+++++.+|+.+++.||+||++..+.+..        ..|..  .+.+.++|+| ++
T Consensus       204 ------~~lr~ii~gGE~l~~~~r~~ie~~~g~~v~~~YG~TE~~~~~~c~~--------~~g~h~~~d~~~vEIvD-p~  268 (445)
T TIGR03335       204 ------SSIRRLVVGGESFADESRNYVEELWGCEVYNTYGSTEGTMCGECQA--------VAGLHVPEDLVHLDVYD-PR  268 (445)
T ss_pred             ------CcceEEEEcCCCCCHHHHHHHHHHhCCcEEecCChhhhhheEEecC--------CCCccccCCceEEEEEc-CC
Confidence                  2799999999999999999999999999999999999864332211        12333  3558899999 66


Q ss_pred             CC-cCCCCCCCcceEEEecC
Q 010455          455 MG-YDALSSVPRGEICLRGN  473 (510)
Q Consensus       455 ~~-~~~~~~~~~Gei~v~g~  473 (510)
                      ++ +++.|  +.|||++++-
T Consensus       269 ~~~~vp~G--e~GELvvT~L  286 (445)
T TIGR03335       269 HQRFLPDG--ECGRIVLTTL  286 (445)
T ss_pred             CCCCCcCC--CceEEEEEec
Confidence            54 35544  9999999974

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=99.69  E-value=8.7e-16  Score=158.78  Aligned_cols=407  Identities=15%  Similarity=0.103  Sum_probs=271.4

Q ss_pred             CCCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHH-HHHhCCCCCCCEEEEEcCCc--hhHHH
Q 010455           41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGS-AMRSRGVNPGDRCGIYGSNC--PEWII  117 (510)
Q Consensus        41 ~~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~-~L~~~gv~~gd~Vai~~~ns--~~~~~  117 (510)
                      ....+...++.+-.+++...|.++.   |.+++ ...+||..+..++.++|+ .|.+.|+.++|+|.+++..+  .++++
T Consensus        92 a~~d~~avl~~~~nhs~~~ta~i~i---d~kgk-~~~~twdkl~~rA~k~a~~~l~ksgl~~~~~vvL~Y~~~e~ie~~i  167 (1363)
T KOG3628|consen   92 ALTDIIAVLRYRRNHSATSTAHICI---DKKGK-ATSITWDKLLNRAEKVAHVELNKSGLKPGDRVVLYYRKCEAIEFLI  167 (1363)
T ss_pred             hhcchHHHHHhhccCCCCCceEEEE---cCCCc-eeeeeHHHHHHHHHhhccHHhhccCCCCCcEEEEEEEhhhhhHHhh
Confidence            3456777788888899999999998   87766 789999999999999999 67777999999999999876  89999


Q ss_pred             HHHHHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCce
Q 010455          118 AMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS  197 (510)
Q Consensus       118 ~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  197 (510)
                      ..++|...|.+++|+.+..+.+++..+++....+++++..+............              ...+.      ..
T Consensus       168 sl~gc~l~g~~~vp~~e~~s~~el~~i~~~~~~~~~l~t~a~~r~~~~~~~~~--------------s~~k~------v~  227 (1363)
T KOG3628|consen  168 SLFGCFLLGIVAVPLSELSSSEELKDIVNPTPERVALTTEAGERAFINDNSPV--------------SLAKA------VA  227 (1363)
T ss_pred             hhccccccceeeccchhhhhhhhhhcccCCCccceEeehhhhHHHhhhccCcc--------------cHHHH------HH
Confidence            99999999999999999999999999999999999998876655432211000              00000      00


Q ss_pred             eeeHHHHHHcCC-CCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhh---------------ccc
Q 010455          198 CFSWEEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVV---------------TGK  261 (510)
Q Consensus       198 ~~~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~---------------~~~  261 (510)
                      ++...++-.... +....+...-. ..+|-||++++|.--|++.+|. ++.+.+.+....+.               ...
T Consensus       228 ~w~t~~~k~~~~~~k~~~P~~~~~-~~~i~~t~s~l~~~~g~V~~~~-~~~q~r~~~~~~nt~Pa~~~~~~~~~~~~~v~  305 (1363)
T KOG3628|consen  228 WWKTNDFKGNYTKDKIKKPRMQLP-YGYIEFTRSPLGNLIGVVYKHK-FLPQMRVLTSIPNTNPARFAAAFYGCLHAHVF  305 (1363)
T ss_pred             hhhcccccceeehhhccCCceeee-eEEEEEeccchhceeeeEeecc-cccchhhhhhccCcChHHHHHhhhcchhhhcc
Confidence            111111100000 00011111222 7899999999999999999998 66555443322211               012


Q ss_pred             cCCCCcEEEEecChHHHHHHHH-HHHHHhcCcEEEEeCC----CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhc
Q 010455          262 VCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISS  336 (510)
Q Consensus       262 ~~~~~d~~~~~~pl~h~~g~~~-~l~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~  336 (510)
                      ....+++++-.+......|++. ++.+++.|.+.+.++.    .|..+...+.+++++++..--..+......+++.   
T Consensus       306 ~~~~~~~~l~~~~~s~~lGlilGV~~alfsg~c~i~~p~~~l~~pG~~~~l~~k~R~~~~ltd~~~Lkq~~~ny~~~---  382 (1363)
T KOG3628|consen  306 PVPSEDVLLTNLDPSQQLGLILGVLVALFSGYCTIGCPKEVLKPPGLIANLITKYRATWSLTDYAGLKQPVYNYQED---  382 (1363)
T ss_pred             ccCcccceeeccCcccccchhhhhhhhhhcCceeecCchhhcCCCcchhhhhccceeEEEeecccccCcccccccCC---
Confidence            3456677777777777788774 8889999999998875    7888999999999999887666665554433221   


Q ss_pred             cChhHHHHHHHHHHhhhhhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHh----c-----
Q 010455          337 GGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVT----S-----  407 (510)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~----~-----  407 (510)
                                                ..+....++     -.+.-.+++|.+++....+..+.......+    +     
T Consensus       383 --------------------------p~a~~s~~k-----~~t~d~sslk~C~Vtc~~vd~~~~~ivs~~wlk~lg~~~~  431 (1363)
T KOG3628|consen  383 --------------------------PKATLSFKK-----YKTPDLSSLKGCMVTCTAVDTEFQEIVSDRWLKPLGETNV  431 (1363)
T ss_pred             --------------------------cccccchhh-----ccCCCccceeeeEEeeeecchHHHHHHHHhhcccccCcCc
Confidence                                      001111111     111112499999999999888765543322    1     


Q ss_pred             -------------CCCeeeeccccccccceecccCCCC-----------------------------ccCCccccccCC-
Q 010455          408 -------------GAPLTQGYGLTESCSGCFTSLADVF-----------------------------NMIGTVGVPMTT-  444 (510)
Q Consensus       408 -------------g~~l~~~yG~tE~~~~~~~~~~~~~-----------------------------~~~~svG~p~~g-  444 (510)
                                   |.-....=+++|.+......+....                             .....+|...|| 
T Consensus       432 ~~~~~p~l~ll~hGgi~is~k~~~~~~~~~~r~p~~~~~~~~~e~ll~~~~L~~~~V~v~~e~~is~~s~kd~~~i~~g~  511 (1363)
T KOG3628|consen  432 KVVDFPILCLLWHGGIPISFKDWMEIGTVSIRRPEQMADTLPGEGLLSKEALKLNEVEVDTEDDISSLSVKDVLCIMPGD  511 (1363)
T ss_pred             ceeechhhhhhhcCceEEEeccchhhhcccccCcccccccCccceeeeccccccceEEEcchhhhhhcCccccceecccc
Confidence                         2222233334565554433332100                             001235665555 


Q ss_pred             eEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhhc-------------cCccccCCe-eeccCCccC
Q 010455          445 VEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV-------------DGWFHTGKN-PWQYTFKKL  509 (510)
Q Consensus       445 ~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~-------------~gw~~TGDl-~~d~dG~~~  509 (510)
                      +.+.|++  ++...-+..+|+|||||.++++..+||.-+..|...|.             ..|.|||=+ ++.+++.++
T Consensus       512 ~t~~vv~--~~t~~LC~~~eVGEIwVsS~~~~~~~~al~~~t~~~F~~~~~~s~~~~~~n~~FmRtGLlGFv~~gki~v  588 (1363)
T KOG3628|consen  512 ATLAVVN--PDTNQLCKTDEVGEIWVSSNSLGKLFYALDKQTENTFKATPVESSGKPPSNVPFMRTGLLGFVHNGKIYV  588 (1363)
T ss_pred             eEEEEeC--CCcccccccCcceeEEEecCCcccceeeccccccceEEeeeccccCCCCccchhhhhcceeeeeCCeEEE
Confidence            5555666  33344555669999999999999999998888877761             138999999 998887654

>KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.67  E-value=9.9e-16  Score=162.99  Aligned_cols=326  Identities=15%  Similarity=0.098  Sum_probs=206.7

Q ss_pred             CCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHH
Q 010455           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (510)
Q Consensus        42 ~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA  121 (510)
                      +.++...+.+.+...|.+.+..+.+. ....+.....||.+....++.+++.|.+.|..+|+.|++++..+.++++..++
T Consensus        35 ~g~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~i~~~t~r~~~~~~n~~~q~l~~~~~~~~~~v~i~~~~~~d~~v~v~~  113 (1032)
T KOG1178|consen   35 MGTLEDSFRRELAEAPENTGHVIIPT-ASESGIIDSFTYRLIRLLSNIIAQFLVSLGSLRGTTVAIYMLPSVDLVVSVFA  113 (1032)
T ss_pred             hcchhhHHHHHHhhcccCCCceEeec-ccccccccchhhhhhhcccchhHHHhhhcccccCceEEEeccCcCCeeeeeee
Confidence            45777788999999999998876643 33445567899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEEecCCCC----HHHHHHHHHh-cCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCc
Q 010455          122 CNSQAITYVPLYDTLG----ANAVEFIINH-AEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGV  196 (510)
Q Consensus       122 ~~~~G~~~v~l~~~~~----~~~l~~~l~~-~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  196 (510)
                      ++++|..+++++|.++    ++++..+... .....-+......-.+  ...   ...+..-               ...
T Consensus       114 ~~~~g~~~~~idp~~~~~e~~~~~~~ia~~~~s~~~~i~~~l~i~~~--~~~---~~~~~~s---------------v~~  173 (1032)
T KOG1178|consen  114 VLAAGLTFLPIDPSWPNSELAGYLMRIAHFLTSVELEIVRRLNIIDI--LLN---SLFPKLS---------------VET  173 (1032)
T ss_pred             hhhcceEEEEecCCCcccccchHHHhhhhhheeccceehhhhhhHHH--Hhh---ccccccc---------------hhh
Confidence            9999999999999998    2222111111 0010111110000000  000   0000000               000


Q ss_pred             eeeeHHHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecCh-
Q 010455          197 SCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPL-  275 (510)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl-  275 (510)
                      ....|..+.. ...........++..+++.||||+||.||+|.-+|..+.....++...+     .+...+.+-..... 
T Consensus       174 ~~~~f~~~~~-~~~~r~~~~~~~ds~~~l~~tSgs~G~pk~v~~~~~sl~~~fdw~~~~f-----~~t~s~~~~~~~~~~  247 (1032)
T KOG1178|consen  174 IADSFQMVLH-NEDTREIRVGGNDSTALLSFTSGSTGVPKGVAGTHFSLANAFDWMFTTF-----PPTGSDRFTFKTSVY  247 (1032)
T ss_pred             ccchhhhhhc-cCCCcceeeecccccceEeecccccccccccchhHHHHHhhhhhccccC-----CcCccchhhhhheee
Confidence            0011111111 1112222344678889999999999999999999999999999988887     55556554222222 


Q ss_pred             HHHHHHHHHHHHHhcCcEEEEeCC----CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHh
Q 010455          276 AHIYDQIIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNY  351 (510)
Q Consensus       276 ~h~~g~~~~l~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  351 (510)
                      ++..-.......|..|+.+..+..    ++..+...+++++++..+.+|++.+.++......+...              
T Consensus       248 ~~d~i~~~~~~~L~~~~~l~~p~~~~~~~~~~l~~~le~y~i~~~~~~~a~~~~l~~~~~~~~~~l--------------  313 (1032)
T KOG1178|consen  248 FDDTIQKFIGALLFNGNNLLVPTATIKDTPGQLASTLERYGITVSHLLPAMCQLLLAILTTSLPLL--------------  313 (1032)
T ss_pred             cccchHHHHhhHhhcCceeecccccCccchhhHHHHHHhhhheeeeechhhhhhhhhhcCcchhhh--------------
Confidence            222222334556777776666543    58999999999999999999999988876432210000              


Q ss_pred             hhhhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcC-CCeeeeccccccccceec
Q 010455          352 KLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG-APLTQGYGLTESCSGCFT  426 (510)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g-~~l~~~yG~tE~~~~~~~  426 (510)
                                   .+.    ....++.+.. ..|+....+|++....+...+...+- .....-|+.++...-+..
T Consensus       314 -------------~~~----~~~~dl~~~~-~~Lkl~~~~~ep~~v~l~~s~~~~~~~~~~~~~y~s~~~~~~~s~  371 (1032)
T KOG1178|consen  314 -------------EHA----FSLSDLLTKR-SCLKLVVLGGEPLLVSLYTSTFDLLAEIFFGLPYLSTDPTGLVSY  371 (1032)
T ss_pred             -------------hhh----hhcccccccc-hhheeeeecCCccchhhhhhhhhcccceeeeecccCCCCccceeH
Confidence                         000    0000000000 26899999999999998885554442 222233888887765554

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=99.64  E-value=1.3e-14  Score=140.86  Aligned_cols=224  Identities=16%  Similarity=0.092  Sum_probs=159.1

Q ss_pred             CCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChH-HHHHHHHHHHHHhcCcEEEE
Q 010455          218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLA-HIYDQIIETHCIHKGCSIGF  296 (510)
Q Consensus       218 ~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~-h~~g~~~~l~~l~~G~~~v~  296 (510)
                      ..++...|--||||||.|+.+.+++..+...+..+.+.+...  +...+|++....-.. +..|+..-+++--.|++++=
T Consensus        88 ~~~~i~~ihaSSGTTGkPt~~~~t~~D~~~wa~~~aR~~~~~--g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip  165 (438)
T COG1541          88 PKEEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSLYSA--GVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIP  165 (438)
T ss_pred             cccceEEEEccCCCCCCceeeecCHHHHHHHHHHHHHHHHHc--cCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEc
Confidence            445666688899999999999999999999988888877443  677778777664421 12223334445556666554


Q ss_pred             eCC-CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhcccCCCCCCchhhHHHHHHH
Q 010455          297 WRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFS  375 (510)
Q Consensus       297 ~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (510)
                      ... +-..-++.++.+++|++.++|+++..+++.+....                                  .+..+  
T Consensus       166 ~~~g~~~~~~~l~~df~~tvI~~tps~~l~lae~~~~~G----------------------------------~~~~~--  209 (438)
T COG1541         166 ISGGNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEEG----------------------------------IDPDK--  209 (438)
T ss_pred             cCCccHHHHHHHHHhcCCcEEEEChHHHHHHHHHHHHcC----------------------------------CChhh--
Confidence            333 88999999999999999999999999988655431                                  11111  


Q ss_pred             HHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeeccccccccceecccCCCCccCCccccccCCeEEEEeecCCC
Q 010455          376 KIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEM  455 (510)
Q Consensus       376 ~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~~~~~~~~~~~~~~svG~p~~g~~i~ivd~~~~  455 (510)
                             .+||.+++|+|+++++..+.+++.||+..++.||+||..+.........    .-.-..-+..-+.|+|++++
T Consensus       210 -------~~lk~~i~gaE~~see~R~~ie~~~g~~~~diYGltE~~g~g~~eC~~~----~glhi~eD~~~~Ei~dP~t~  278 (438)
T COG1541         210 -------LSLKKGIFGAEPWSEEMRKVIENRFGCKAFDIYGLTEGFGPGAGECTER----NGLHIWEDHFIFEIVDPETG  278 (438)
T ss_pred             -------cceeEEEEecccCCHHHHHHHHHHhCCceeeccccccccCCcccccccc----cCCCcchhhceeeeecCCcC
Confidence                   2899999999999999999999999999999999999976531111111    10112346788899996666


Q ss_pred             CcCCCCCCCcceEEEecCCccccccCCchhhhhhhccCccccCCe-eecc
Q 010455          456 GYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGKN-PWQY  504 (510)
Q Consensus       456 ~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDl-~~d~  504 (510)
                      ..++.|  +.|||++..-.  +.+          +.==-|+|||+ .+.+
T Consensus       279 e~l~dg--e~GelV~T~L~--~~~----------~PlIRYrtgDit~i~~  314 (438)
T COG1541         279 EQLPDG--ERGELVITTLT--KEG----------MPLIRYRTGDITVILS  314 (438)
T ss_pred             ccCCCC--CeeEEEEEecc--ccC----------cceEEEEcCCeeEecc
Confidence            666665  88999998732  100          00013899999 8766

>TIGR02304 aden_form_hyp probable adenylate-forming enzyme

Probab=99.20  E-value=9.8e-10  Score=109.83  Aligned_cols=144  Identities=16%  Similarity=0.167  Sum_probs=97.9

Q ss_pred             EEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEe--cChHHHHHHHHHHHHHhcC-cEEEEeC-
Q 010455          223 STIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSF--LPLAHIYDQIIETHCIHKG-CSIGFWR-  298 (510)
Q Consensus       223 a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~--~pl~h~~g~~~~l~~l~~G-~~~v~~~-  298 (510)
                      ..+..||||||.|-.+.++.................  .+...++++...  .+. +.+      ..+... ..+-+.. 
T Consensus       102 ~~v~~TSGSSG~p~~f~~~~~~~~~~~a~~~~~~~~--~g~~~g~r~a~~~~~~~-~ly------~~~~~~~~~~~~~~l  172 (430)
T TIGR02304       102 ISVGLSSGTSGRRGLFVVSPEEQQMWAGGILAKVLP--DGLFAKHRIAFFLRADN-NLY------QSVNNRWISLDFFDL  172 (430)
T ss_pred             EEEEECCCCCCCceEEEECHHHHHHHHHHHHhhhCc--cccccCCcEEEEEccCh-hHH------HHHHhccceeeecCC
Confidence            456779999999999999998765443332222211  133344444433  221 111      111111 1122222 


Q ss_pred             -CCHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhcccCCCCCCchhhHHHHHHHHH
Q 010455          299 -GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKI  377 (510)
Q Consensus       299 -~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (510)
                       .+....++.|.+++|+++.+.|+.+..|++..+...                                  ++       
T Consensus       173 ~~~~~~~l~~L~~~~P~~L~g~pS~l~~LA~~~~~~~----------------------------------l~-------  211 (430)
T TIGR02304       173 LAPFQAHIKRLNQRKPSIIVAPPSVLRALALEVMEGE----------------------------------LT-------  211 (430)
T ss_pred             CcCHHHHHHHHHHhCCCEEEEcHHHHHHHHHHHHhcC----------------------------------CC-------
Confidence             378899999999999999999999999987543210                                  00       


Q ss_pred             HHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeecccccccc
Q 010455          378 REAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCS  422 (510)
Q Consensus       378 ~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~  422 (510)
                           .+++.++++||+++++..+.+++.||+++++.||+|| |.
T Consensus       212 -----~~~k~ii~~~E~l~~~~r~~Ie~~fg~~V~~~YG~tE-g~  250 (430)
T TIGR02304       212 -----IKPKKVISVAEVLEPQDRELIRNVFKNTVHQIYQATE-GF  250 (430)
T ss_pred             -----CCceEEEEccCCCCHHHHHHHHHHhCCCeeEccCCch-hh
Confidence                 1689999999999999999999999999999999999 44

Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.

>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria

Probab=98.41  E-value=4.1e-05  Score=75.10  Aligned_cols=222  Identities=13%  Similarity=0.113  Sum_probs=123.6

Q ss_pred             CCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHH---HH--HHHHHHHHhcCc
Q 010455          218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHI---YD--QIIETHCIHKGC  292 (510)
Q Consensus       218 ~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~---~g--~~~~l~~l~~G~  292 (510)
                      ..+++..++-||||||.|--+.+.+..+..+..++...+..........-.++...|-...   .+  ....+..+..+.
T Consensus        87 ~~e~~~~~~tSSGTtG~~S~i~~D~~t~~~~~~~~~~~~~~~~~~~~~~~~il~l~p~~~~~~~~~~~~~~~~~~~~~~~  166 (365)
T PF04443_consen   87 PEEEVEKVFTSSGTTGQPSRIFRDRETAERQQKSLNKIFQHFLGPSRLPMLILDLSPSPENRNSFSARYAGILGELFFGS  166 (365)
T ss_pred             ChhhheeEEECCCCCCCCcEEEECHHHHHHHHHHHHHHHHhhcccccCCeEEEEecCCcccccchHHHHHHHHhhcccCc
Confidence            3566778899999999986666666666666655555443221111122233333343211   11  112333444555


Q ss_pred             EEEEeCC--CHhhHHHHHh----hhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhcccCCCCCCch
Q 010455          293 SIGFWRG--DVRYLMEDIQ----ELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAA  366 (510)
Q Consensus       293 ~~v~~~~--~~~~~~~~i~----~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (510)
                      ...+-..  +...++..+.    +.++-.+++.|.++-.++..++.....                              
T Consensus       167 ~~~l~~~~ld~~~~~~~L~~~~~~~~pv~l~Gftf~~~~~~~~l~~~~~~------------------------------  216 (365)
T PF04443_consen  167 RFALDNDELDLEGLIEALFRAEHSGEPVLLFGFTFFIWFLLDELEERGIR------------------------------  216 (365)
T ss_pred             eeeecCCccCHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHHHHhcCCc------------------------------
Confidence            5444222  5665555553    566888999898777666543322110                              


Q ss_pred             hhHHHHHHHHHHHHhCCcEeEEEEec------CCCC-HHHHHHHHHhcCC----CeeeeccccccccceecccCCCCccC
Q 010455          367 PLLDSLVFSKIREAFGGRLQAMLSGA------APLP-IHVEEFLRVTSGA----PLTQGYGLTESCSGCFTSLADVFNMI  435 (510)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~lr~i~~gg------~~~~-~~~~~~~~~~~g~----~l~~~yG~tE~~~~~~~~~~~~~~~~  435 (510)
                           +.+.       ...+.+-.||      +.++ .++.+.+.+.||+    .+++.|||||..........      
T Consensus       217 -----~~L~-------~~s~vi~~GGwK~~~~e~v~r~ef~~~l~~~~Gv~~~~~i~~~ygmtEl~s~~~~~~~------  278 (365)
T PF04443_consen  217 -----FRLP-------KGSIVIHGGGWKGRRKEAVSREEFYARLQEVFGVIPIENIYDMYGMTELNSQAYECGH------  278 (365)
T ss_pred             -----ccCC-------CCCEEEeCCCCCccccCccCHHHHHHHHHHHHCCCCHHHeeeeeeccccchhheeCCC------
Confidence                 0010       1345566666      3465 4677788888898    59999999997653322211      


Q ss_pred             CccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhhccCccccCCe-eeccC
Q 010455          436 GTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGKN-PWQYT  505 (510)
Q Consensus       436 ~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDl-~~d~d  505 (510)
                      +..  +.|.- +.|+|+.+..+++.  |+.|-|.+-.+... .|            -|..-|.|+ .+..+
T Consensus       279 ~~~--~~p~w-V~iRDp~tl~~~~~--Ge~Gli~vidl~~~-s~------------p~~IlTeDlGvl~~~  331 (365)
T PF04443_consen  279 GHF--HVPPW-VIIRDPETLEPLPP--GETGLIQVIDLANT-SY------------PGFILTEDLGVLHGD  331 (365)
T ss_pred             Ccc--cCCCe-EEEECCCCCcCCCC--CCeeEEEEEccccc-CC------------CcEEEEcceeeecCC
Confidence            111  22222 67778445455555  48999999886432 23            234668888 76554

LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=94.42  E-value=0.18  Score=50.28  Aligned_cols=107  Identities=12%  Similarity=-0.009  Sum_probs=81.9

Q ss_pred             EEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCc--hhHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHhcCccEE
Q 010455           76 VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNC--PEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA  153 (510)
Q Consensus        76 ~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns--~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~v  153 (510)
                      .-+|+.++...+..+|+.|...|..+||+|.....-.  ..-.-..+|+.++|+.++|+.+.. -+....++++.++.+|
T Consensus       108 ~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~~g~-~~~~~~l~~df~~tvI  186 (438)
T COG1541         108 FGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPISGGN-TERQLELMKDFKPTVI  186 (438)
T ss_pred             eecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccCCcc-HHHHHHHHHhcCCcEE
Confidence            4579999999999999999999999999998887722  122678899999999999998843 4566678899999999


Q ss_pred             EEcCCChhhHhhcCccC-----CCCccEEEEecCC
Q 010455          154 FVQENKIPSILSCLPRC-----CLYLKTIVSFANV  183 (510)
Q Consensus       154 i~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~  183 (510)
                      .+.....-.+.+...+.     ...++.++.-++.
T Consensus       187 ~~tps~~l~lae~~~~~G~~~~~~~lk~~i~gaE~  221 (438)
T COG1541         187 AATPSYLLYLAEEAEEEGIDPDKLSLKKGIFGAEP  221 (438)
T ss_pred             EEChHHHHHHHHHHHHcCCChhhcceeEEEEeccc
Confidence            99988766555444333     2444555554444

>PRK09188 serine/threonine protein kinase; Provisional

Probab=93.86  E-value=0.021  Score=56.29  Aligned_cols=20  Identities=20%  Similarity=-0.052  Sum_probs=17.5

Q ss_pred             hccCccccCCe-ee-ccCCccC
Q 010455          490 IVDGWFHTGKN-PW-QYTFKKL  509 (510)
Q Consensus       490 ~~~gw~~TGDl-~~-d~dG~~~  509 (510)
                      +.||||+|||+ ++ |+||++.
T Consensus       206 ~~dgW~~TGDlg~~~d~dG~l~  227 (365)
T PRK09188        206 PSRIWLATGKKVYNFITRGLFS  227 (365)
T ss_pred             ccCcEEeCCCEEEEEcCCCeEE
Confidence            37999999999 98 7999875

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=87.27  E-value=5.5  Score=40.77  Aligned_cols=112  Identities=16%  Similarity=0.132  Sum_probs=75.4

Q ss_pred             CCCCCCe--EEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchh--HHHHHHHHHhcCCeEEEecCCCCHHHHHHH
Q 010455           69 DGKVGPY--VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPE--WIIAMEACNSQAITYVPLYDTLGANAVEFI  144 (510)
Q Consensus        69 ~~~~~~~--~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~--~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~  144 (510)
                      .|..|.+  ..+|+.++...+..+++.+...|+++||++.++.+....  .....+++..+|+.+++...   ......+
T Consensus        95 SGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~~---~~~~~~~  171 (445)
T TIGR03335        95 SGTSGTPKSFFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEGK---CTFPIRI  171 (445)
T ss_pred             CCCCCCcceeeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCCc---hhHHHHH
Confidence            3444433  357999999999899988888999999999998876543  23456788999998876653   2345677


Q ss_pred             HHhcCccEEEEcCCChhhHhhcCcc-----CCCCccEEEEecCC
Q 010455          145 INHAEVSIAFVQENKIPSILSCLPR-----CCLYLKTIVSFANV  183 (510)
Q Consensus       145 l~~~~~~~vi~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~~  183 (510)
                      ++..++..++......-.+.+...+     ....++.++.-++.
T Consensus       172 i~~~~~t~l~~~ps~ll~La~~~~~~g~~~~~~~lr~ii~gGE~  215 (445)
T TIGR03335       172 IESYRPTGIVASVFKLLRLARRMKAEGIDPAESSIRRLVVGGES  215 (445)
T ss_pred             HHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCcceEEEEcCCC
Confidence            8889999988765544333221111     12356666665544

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=87.10  E-value=5.1  Score=40.63  Aligned_cols=96  Identities=17%  Similarity=0.122  Sum_probs=71.0

Q ss_pred             CCCCCCeE--EEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCch--hHHHHHHHHHhcCCeEEEecCCCCHHHHHHH
Q 010455           69 DGKVGPYV--WLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCP--EWIIAMEACNSQAITYVPLYDTLGANAVEFI  144 (510)
Q Consensus        69 ~~~~~~~~--~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~--~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~  144 (510)
                      .|..|.+.  .+|...+......+++.+...|+++||++........  ......+++...|+.+++++... .+.+...
T Consensus        84 SGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~  162 (422)
T TIGR02155        84 SGTTGKPTVVGYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPISGGQ-TEKQVQL  162 (422)
T ss_pred             CCCCCCCeEeccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecCCCC-HHHHHHH
Confidence            45555444  4578888777777788888889999999887665442  22334677889999999988764 5778889


Q ss_pred             HHhcCccEEEEcCCChhhHhh
Q 010455          145 INHAEVSIAFVQENKIPSILS  165 (510)
Q Consensus       145 l~~~~~~~vi~~~~~~~~~~~  165 (510)
                      ++..++.+++........+.+
T Consensus       163 i~~~~~t~l~~~Ps~l~~L~~  183 (422)
T TIGR02155       163 IQDFKPDIIMVTPSYMLNLLE  183 (422)
T ss_pred             HHHHCCCEEEEcHHHHHHHHH
Confidence            999999999998876655443

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	510
3nyq_A	505	Malonyl-Coa Ligase Ternary Product Complex With Met		3e-17
1ult_A	541	Crystal Structure Of Tt0168 From Thermus Thermophil		1e-15
3a9u_A	536	Crystal Structures And Enzymatic Mechanisms Of A Po		7e-15
3tsy_A	979	4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr		2e-14
4g37_A	555	Structure Of Cross-Linked Firefly Luciferase In Sec		3e-14
4g36_A	555	Photinus Pyralis Luciferase In The Adenylate-Formin		2e-13
1ba3_A	550	Firefly Luciferase In Complex With Bromoform Length		2e-13
3iep_A	551	Firefly Luciferase Apo Structure (P41 Form) Length		3e-13
4fuq_A	503	Crystal Structure Of Apo Matb From Rhodopseudomonas		1e-11
2d1q_A	548	Crystal Structure Of The Thermostable Japanese Fire		4e-11
3r44_A	517	Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas		4e-11
2d1s_A	548	Crystal Structure Of The Thermostable Japanese Fire		5e-11
3t5b_A	396	Crystal Structure Of N-Terminal Domain Of Facl13 Fr		5e-11
2d1t_A	548	Crystal Structure Of The Thermostable Japanese Fire		5e-11
3qya_A	582	Crystal Structure Of A Red-Emitter Mutant Of Lampyr		8e-10
4gxr_A	503	Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len		2e-09
4gxq_A	506	Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer		2e-09
4fut_A	503	Crystal Structure Of Atp Bound Matb From Rhodopseud		2e-09
3ivr_A	509	Crystal Structure Of Putative Long-Chain-Fatty-Acid		2e-08
3g7s_A	549	Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Li		4e-08
3pbk_A	583	Structural And Functional Studies Of Fatty Acyl-Ade		3e-05
3ipl_A	501	Crystal Structure Of O-Succinylbenzoic Acid-Coa Lig		4e-05
2v7b_A	529	Crystal Structures Of A Benzoate Coa Ligase From Bu		6e-05
1pg3_A	652	Acetyl Coa Synthetase, Acetylated On Lys609 Length		9e-05
2p2m_A	652	Acetyl-Coa Synthetase, R194a Mutation Length = 652		1e-04
2p2f_A	652	Acetyl-coa Synthetase, Wild-type With Acetate, Amp,		1e-04
2p2b_A	652	Acetyl-coa Synthetase, V386a Mutation Length = 652		1e-04
2p2q_A	652	Acetyl-Coa Synthetase, R584e Mutation Length = 652		1e-04
2p2j_A	652	Acetyl-Coa Synthetase, K609a Mutation Length = 652		1e-04
2p20_A	652	Acetyl-Coa Synthetase, R584a Mutation Length = 652		1e-04
2vsq_A	1304	Structure Of Surfactin A Synthetase C (Srfa-C), A N		1e-04
1amu_A	563	Phenylalanine Activating Domain Of Gramicidin Synth		8e-04

>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505

Iteration: 1
 Score = 86.7 bits (213), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 98/344 (28%), Positives = 140/344 (40%), Gaps = 82/344 (23%)
Query: 182 NVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPK----KKTNIST------------- 224
           N  S  K+ A  L  S  S    L L   D ELPP     ++ ++               
Sbjct: 99  NPKSGDKELAHILSDSAPS----LVLAPPDAELPPALGALERVDVDVRARGAVPEDGADD 154
Query: 225 -----IMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIY 279
                ++YTSGTTG PKG V+  +A+   + ++   +  TG     ED     LPL H++
Sbjct: 155 GDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTG-----EDVLVQGLPLFHVH 209
Query: 280 DQIIET-HCIHKGCSIGFWRGDVRYLMEDI-QELK--PTMFSGVPRVYDRIYTGISNKIS 335
             ++     + +G S+   R   R+  E   +EL    TM  GVP +Y RI    +  + 
Sbjct: 210 GLVLGILGPLRRGGSV---RHLGRFSTEGAARELNDGATMLFGVPTMYHRI----AETLP 262
Query: 336 SGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPL 395
           +   L+K L                                     G RL  ++SG+A L
Sbjct: 263 ADPELAKALA------------------------------------GARL--LVSGSAAL 284
Query: 396 PIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEM 455
           P+H  E +   +G  + + YG+TE+        AD     GTVGVP+  VE RL      
Sbjct: 285 PVHDHERIAAATGRRVIERYGMTETLMNTSVR-ADGEPRAGTVGVPLPGVELRLVEEDGT 343
Query: 456 GYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV-DGWFHTG 498
              AL     GEI +RG  LF+ Y  RPD T      DG+F TG
Sbjct: 344 PIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTG 387

>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541

Iteration: 1
 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 116/473 (24%), Positives = 178/473 (37%), Gaps = 96/473 (20%)
Query: 46  WQFFCDSAKRIPNNQMLGGRK--VSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGD 103
           W F   +A        L GRK  VS    G     TY EVY  A R    +R+ GV  GD
Sbjct: 21  WDFLERAAA-------LFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGD 73
Query: 104 RCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSI 163
           R    G N    + A  A              L    + +I+NHAE  +     N +P +
Sbjct: 74  RVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLV 133
Query: 164 LSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNIS 223
            +        LKT+  F  +     +          ++EE L        +P +    ++
Sbjct: 134 EAIRGE----LKTVQHFVVMDEKAPE-------GYLAYEEALGEEADPVRVPERAACGMA 182
Query: 224 TIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII 283
              YT+GTTG PKGVV +++A+V   L+     +V G   SE+D     +P+ H+    +
Sbjct: 183 ---YTTGTTGLPKGVVYSHRALVLHSLAAS---LVDGTALSEKDVVLPVVPMFHVNAWCL 236
Query: 284 ETHCIHKGCS--IGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALS 341
                  G    +   R D   L+E       T  +GVP V    +  +++ + S G   
Sbjct: 237 PYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTV----WLALADYLESTG--- 289
Query: 342 KKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEE 401
                    ++L  +++ +    AAP   SL+          R + M             
Sbjct: 290 ---------HRLKTLRRLVVGGSAAP--RSLI---------ARFERM------------- 316
Query: 402 FLRVTSGAPLTQGYGLTES--------CSGCFTSLA--DVFNMIGTVGVPMTTVEARLES 451
                 G  + QGYGLTE+              SL+  +   +    G+P+  V  RL  
Sbjct: 317 ------GVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLV--RLRV 368
Query: 452 VPEMGYDALSSVPR-----GEICLRGNTLFSGYYKRPDLTEEVIV-DGWFHTG 498
             E G      VP+     GE+ L+G  +  GYY   + T   +  DG+F TG
Sbjct: 369 ADEEG----RPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTG 417

>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536

Iteration: 1
 Score = 78.6 bits (192), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 109/436 (25%), Positives = 171/436 (39%), Gaps = 88/436 (20%)
Query: 79  TYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQA--ITYVPLYDTL 136
           TY +V   A R  S +   G+  GD   ++  + PE+++A    + +   IT    + T 
Sbjct: 51  TYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTP 110
Query: 137 GANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGV 196
              A      HA+ S A +           + + C Y K +  FA  S  +    +    
Sbjct: 111 AELA-----KHAKASRAKL----------LITQACYYEK-VKDFARESDVKVMCVDSAPD 154
Query: 197 SCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMF 256
            C  + E  Q    +         ++  + Y+SGTTG PKGV+LT++ ++    SV Q  
Sbjct: 155 GCLHFSELTQADENEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLIT---SVAQQ- 210
Query: 257 VVTGK----VCSEEDTYFSFLPLAHIYDQIIETHC-IHKGCSIGFW-RGDVRYLMEDIQE 310
            V G         ED     LP+ HIY       C +  G  I    + ++  L+  I++
Sbjct: 211 -VDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEK 269
Query: 311 LKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLD 370
            K ++   VP V   I                                       +P LD
Sbjct: 270 YKVSIAPVVPPVMMSI-------------------------------------AKSPDLD 292
Query: 371 SLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVT-SGAPLTQGYGLTES---CSGCFT 426
               S +R         + SG APL   +E+ +R     A L QGYG+TE+    + C  
Sbjct: 293 KHDLSSLR--------MIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLA 344
Query: 427 SLADVFNMI-GTVGVPMTTVEARLESVPEMGYDALSSVPR---GEICLRGNTLFSGYYKR 482
              + F++  G  G  +   E ++   PE G    +S+PR   GEIC+RG+ +  GY   
Sbjct: 345 FAKEPFDIKPGACGTVVRNAEMKIVD-PETG----ASLPRNQPGEICIRGDQIMKGYLND 399
Query: 483 PDLTEEVI-VDGWFHT 497
           P+ T   I  +GW HT
Sbjct: 400 PEATSRTIDKEGWLHT 415

>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 109/440 (24%), Positives = 171/440 (38%), Gaps = 88/440 (20%)
Query: 79  TYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGA 138
           TY +V+  + +  +     GVN  D   +   NCPE++++  A + +  T         A
Sbjct: 90  TYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGAT---------A 140
Query: 139 NAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFAN-----VSSSQKKEAEE 193
            A       AE++      N    I         Y+  I    N     +      E+  
Sbjct: 141 TAANPFFTPAEIAKQAKASNTKLIITEAR-----YVDKIKPLQNDDGVVIVCIDDNESVP 195
Query: 194 LGVSCFSWEEFLQLGTLDCELPPKKKT---NISTIMYTSGTTGEPKGVVLTNQAIVAEVL 250
           +   C  + E  Q  T   E+    +    ++  + Y+SGTTG PKGV+LT++ +V    
Sbjct: 196 IPEGCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVT--- 252
Query: 251 SVDQMFVVTGK----VCSEEDTYFSFLPLAHIYDQIIETHC-IHKGCSIGFW-RGDVRYL 304
           SV Q   V G+        +D     LP+ HIY       C +  G +I    + ++  L
Sbjct: 253 SVAQQ--VDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLL 310
Query: 305 MEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNK 364
           +E IQ  K T+   VP                                            
Sbjct: 311 LELIQRCKVTVAPMVP-------------------------------------------- 326
Query: 365 AAPLLDSLVFSKIREAFG-GRLQAMLSGAAPLPIHVEEFLRVT-SGAPLTQGYGLTESCS 422
             P++ ++  S   E +    ++ + SGAAPL   +E+ +      A L QGYG+TE+  
Sbjct: 327 --PIVLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGP 384
Query: 423 GCFTSLA---DVFNM-IGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSG 478
               SL    + F +  G  G  +   E ++   P+ G D+LS    GEIC+RG+ +  G
Sbjct: 385 VLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVD-PDTG-DSLSRNQPGEICIRGHQIMKG 442
Query: 479 YYKRPDLTEEVI-VDGWFHT 497
           Y   P  T E I  DGW HT
Sbjct: 443 YLNNPAATAETIDKDGWLHT 462

>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555

Iteration: 1
 Score = 76.6 bits (187), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 97/451 (21%), Positives = 169/451 (37%), Gaps = 106/451 (23%)
Query: 76  VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDT 135
           V +TY E ++ ++R   AM+  G+N   R  +   N  ++ + +       +   P  D 
Sbjct: 54  VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVSSENSLQFFMPVLGALFIGVAVAPANDC 113
Query: 136 LGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELG 195
                +   +N ++ ++ FV +  +  IL+   +  +  K I+  +              
Sbjct: 114 YNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTD----------- 162
Query: 196 VSCFSWEEFLQLGT-LDCELPP------------KKKTNISTIMYTSGTTGEPKGVVLTN 242
                ++ F  + T +   LPP             +   I+ IM +SG+TG PKGV L +
Sbjct: 163 -----YQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPH 217
Query: 243 QAIVAEVLSV-DQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGF-WRGD 300
           +A+        D +F   G   + +    S +P  H +        +  G  +   +R +
Sbjct: 218 RALAVRFSHARDPIF---GNQIAPDTAILSVVPFHHGFGMFTTLGYLISGFRVVLMYRFE 274
Query: 301 VRYLMEDIQELK-------PTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKL 353
               +  +Q+ K       PT+FS + +                                
Sbjct: 275 EELFLRSLQDYKIQSALLVPTLFSFLAK-------------------------------- 302
Query: 354 GNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAP-LT 412
                       + L+D    S + E        + SG APL   V E +      P + 
Sbjct: 303 ------------STLIDKYDLSNLHE--------IASGGAPLSKEVGEAVAKRFHLPGIR 342
Query: 413 QGYGLTESCSGCF-TSLADVFNMIGTVGVPMTTVEAR---LESVPEMGYDALSSVPRGEI 468
           QGYGLTE+ S    T   D  +  G VG  +   EA+   L++   +G +      RGE+
Sbjct: 343 QGYGLTETTSAILITPKGD--DKPGAVGKVVPFFEAKVVDLDTGKTLGVNQ-----RGEL 395
Query: 469 CLRGNTLFSGYYKRPDLTEEVI-VDGWFHTG 498
            +RG  + SGY   P+ T  +I  DGW H+G
Sbjct: 396 SVRGPMIMSGYVNNPEATNALIDKDGWLHSG 426

>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 99/443 (22%), Positives = 169/443 (38%), Gaps = 90/443 (20%)
Query: 76  VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDT 135
           V +TY E ++ ++R   AM+  G+N   R  +   N  ++ + +       +   P  D 
Sbjct: 54  VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDI 113
Query: 136 LGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELG 195
                +   +N ++ ++ FV +  +  IL+   +  +  K I+  +              
Sbjct: 114 YNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTD----------- 162
Query: 196 VSCFSWEEFLQLGT-LDCELPP------------KKKTNISTIMYTSGTTGEPKGVVLTN 242
                ++ F  + T +   LPP             +   I+ IM +SG+TG PKGV L +
Sbjct: 163 -----YQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPH 217
Query: 243 Q-AIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGF-WRGD 300
           + A V    + D +F   G     +    S +P  H +        +  G  +   +R +
Sbjct: 218 RTACVRFSHARDPIF---GNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFE 274
Query: 301 VRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGM 360
               +  +Q+ K                     I S   L   LF F             
Sbjct: 275 EELFLRSLQDYK---------------------IQSA-LLVPTLFSFF------------ 300
Query: 361 PQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAP-LTQGYGLTE 419
                + L+D    S + E        + SG APL   V E +      P + QGYGLTE
Sbjct: 301 ---AKSTLIDKYDLSNLHE--------IASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTE 349
Query: 420 SCSGCFTSLADVFNMIGTVGVPMTTVEAR---LESVPEMGYDALSSVPRGEICLRGNTLF 476
           + S    +  +  +  G VG  +   EA+   L++   +G +      RGE+C+RG  + 
Sbjct: 350 TTSAILIT-PEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQ-----RGELCVRGPMIM 403
Query: 477 SGYYKRPDLTEEVI-VDGWFHTG 498
           SGY   P+ T  +I  DGW H+G
Sbjct: 404 SGYVNNPEATNALIDKDGWLHSG 426

>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 98/443 (22%), Positives = 168/443 (37%), Gaps = 90/443 (20%)
Query: 76  VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDT 135
           V +TY E ++ ++R   AM+  G+N   R  +   N  ++ + +       +   P  D 
Sbjct: 49  VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDI 108
Query: 136 LGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELG 195
                +   +N ++ ++ FV +  +  IL+   +  +  K I+  +              
Sbjct: 109 YNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTD----------- 157
Query: 196 VSCFSWEEFLQLGT-LDCELPP------------KKKTNISTIMYTSGTTGEPKGVVLTN 242
                ++ F  + T +   LPP             +   I+ IM +SG+TG PKGV L +
Sbjct: 158 -----YQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPH 212
Query: 243 Q-AIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGF-WRGD 300
           + A V    + D +F   G     +    S +P  H +        +  G  +   +R +
Sbjct: 213 RTACVRFSHARDPIF---GNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFE 269
Query: 301 VRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGM 360
               +  +Q+ K      VP                       LF F             
Sbjct: 270 EELFLRSLQDYKIQSALLVP----------------------TLFSFF------------ 295
Query: 361 PQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAP-LTQGYGLTE 419
                + L+D    S + E        + SG APL   V E +      P + QGYGLTE
Sbjct: 296 ---AKSTLIDKYDLSNLHE--------IASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTE 344
Query: 420 SCSGCFTSLADVFNMIGTVGVPMTTVEAR---LESVPEMGYDALSSVPRGEICLRGNTLF 476
           + S    +  +  +  G VG  +   EA+   L++   +G +      RGE+C+RG  + 
Sbjct: 345 TTSAILIT-PEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQ-----RGELCVRGPMIM 398
Query: 477 SGYYKRPDLTEEVI-VDGWFHTG 498
           SGY   P+ T  +I  DGW H+G
Sbjct: 399 SGYVNNPEATNALIDKDGWLHSG 421

>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 99/443 (22%), Positives = 169/443 (38%), Gaps = 90/443 (20%)
Query: 76  VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDT 135
           V +TY E ++ ++R   AM+  G+N   R  +   N  ++ + +       +   P  D 
Sbjct: 49  VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDI 108
Query: 136 LGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELG 195
                +   +N ++ ++ FV +  +  IL+   +  +  K I+  +              
Sbjct: 109 YNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTD----------- 157
Query: 196 VSCFSWEEFLQLGT-LDCELPP------------KKKTNISTIMYTSGTTGEPKGVVLTN 242
                ++ F  + T +   LPP             +   I+ IM +SG+TG PKGV L +
Sbjct: 158 -----YQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPH 212
Query: 243 Q-AIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGF-WRGD 300
           + A V    + D +F   G     +    S +P  H +        +  G  +   +R +
Sbjct: 213 RTACVRFSHARDPIF---GNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFE 269
Query: 301 VRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGM 360
               +  +Q+ K                     I S   L   LF F             
Sbjct: 270 EELFLRSLQDYK---------------------IQSA-LLVPTLFSFF------------ 295
Query: 361 PQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAP-LTQGYGLTE 419
                + L+D    S + E        + SG APL   V E +      P + QGYGLTE
Sbjct: 296 ---AKSTLIDKYDLSNLHE--------IASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTE 344
Query: 420 SCSGCFTSLADVFNMIGTVGVPMTTVEAR---LESVPEMGYDALSSVPRGEICLRGNTLF 476
           + S    +  +  +  G VG  +   EA+   L++   +G +      RGE+C+RG  + 
Sbjct: 345 TTSAILIT-PEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQ-----RGELCVRGPMIM 398
Query: 477 SGYYKRPDLTEEVI-VDGWFHTG 498
           SGY   P+ T  +I  DGW H+G
Sbjct: 399 SGYVNNPEATNALIDKDGWLHSG 421

>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 88/427 (20%), Positives = 161/427 (37%), Gaps = 80/427 (18%)
Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           ++Y E+   A R  + + +RG+  GDR         E ++   A       Y+PL     
Sbjct: 29  ISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLNTAYT 88
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
            + +++ I  AE           P I+ C P     +  I +    +           ++
Sbjct: 89  LHELDYFITDAE-----------PKIVVCDPSKRDGIAAIAAKVGATVETLGPDGRGSLT 137
Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV 257
             +        T+D     +   +++ I+YTSGTTG  KG  L++  + +  L++   + 
Sbjct: 138 DAAAGASEAFATID-----RGADDLAAILYTSGTTGRSKGAXLSHDNLASNSLTLVDYWR 192
Query: 258 VTGKVCSEEDTYFSFLPLAHIYDQIIETHC--IHKGCSIGFWRGDVRYLMEDIQELKPTM 315
            T      +D     LP+ H +   + ++     +G  I   + D   +++     + T+
Sbjct: 193 FT-----PDDVLIHALPIYHTHGLFVASNVTLFARGSXIFLPKFDPDKILD--LXARATV 245
Query: 316 FSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFS 375
             GVP  Y R+                                             L   
Sbjct: 246 LXGVPTFYTRL---------------------------------------------LQSP 260
Query: 376 KIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMI 435
           ++ +   G  +  +SG+APL           +G  + + YG TE+     ++  D   + 
Sbjct: 261 RLTKETTGHXRLFISGSAPLLADTHREWSAKTGHAVLERYGXTETNXNT-SNPYDGDRVP 319
Query: 436 GTVGVPMTTVEARLESVPEMGYDALSSVPRGEIC---LRGNTLFSGYYKRPDLTE-EVIV 491
           G VG  +  V AR+   PE G      +PRG+I    ++G  +F GY++ P+ T+ E   
Sbjct: 320 GAVGPALPGVSARVTD-PETG----KELPRGDIGXIEVKGPNVFKGYWRXPEKTKSEFRD 374
Query: 492 DGWFHTG 498
           DG+F TG
Sbjct: 375 DGFFITG 381

>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 97/439 (22%), Positives = 169/439 (38%), Gaps = 82/439 (18%)
Query: 76  VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDT 135
           V  +Y E  + +   G A+++ G+    R  +   NC E+ I + A     +   P  + 
Sbjct: 51  VDYSYAEYLEKSXXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEI 110
Query: 136 LGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELG 195
                +   +  ++ +I F  +  +  +++ + +    +KTIV   +       + +  G
Sbjct: 111 YTLRELVHSLGISKPTIVFSSKKGLDKVIT-VQKTVTTIKTIVILDS-------KVDYRG 162
Query: 196 VSCFSWEEFLQLGTLDCELPP------------KKKTNISTIMYTSGTTGEPKGVVLTNQ 243
             C   + F++  T     PP             +K  ++ IM +SG+TG PKGV LT++
Sbjct: 163 YQCL--DTFIKRNT-----PPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHE 215
Query: 244 AIVAEVLSV-DQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW-RGDV 301
            IV       D ++   G   S      + +P  H +        +  G  +    + D 
Sbjct: 216 NIVTRFSHARDPIY---GNQVSPGTAVLTVVPFHHGFGMFTTLGYLICGFRVVMLTKFDE 272
Query: 302 RYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMP 361
              ++ +Q+ K T    VP ++      I NK            E    Y L N      
Sbjct: 273 ETFLKTLQDYKCTSVILVPTLF-----AILNK-----------SELLNKYDLSN------ 310
Query: 362 QNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAP-LTQGYGLTES 420
                                  L  + SG APL   V E +      P + QGYGLTE+
Sbjct: 311 -----------------------LVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTET 347
Query: 421 CSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYY 480
            S    +  +  +  G  G  +   +A++  +      +L    RGE+C++G  L  GY 
Sbjct: 348 TSAIIIT-PEGDDKPGASGKVVPLFKAKVIDLDTK--KSLGPNRRGEVCVKGPMLMKGYV 404
Query: 481 KRPDLTEEVI-VDGWFHTG 498
             P+ T+E+I  +GW HTG
Sbjct: 405 NNPEATKELIDEEGWLHTG 423

>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 94/434 (21%), Positives = 159/434 (36%), Gaps = 91/434 (20%)
Query: 76  VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDT 135
           V +TY ++   A R    + + G+  GDR  +   N  E+              VP+   
Sbjct: 42  VRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTR 101
Query: 136 LGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKK----EA 191
           L A  V FI++ +   +        P ++  +        T+  +    S  ++     A
Sbjct: 102 LAAPEVSFILSDSGSKVVIYGAPSAP-VIDAIRAQADPPGTVTDWIGADSLAERLRSAAA 160
Query: 192 EELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLS 251
           +E  V C   +                      IMYTSGTTG PKGVV T++++ +   S
Sbjct: 161 DEPAVECGGDDNLF-------------------IMYTSGTTGHPKGVVHTHESVHSAASS 201
Query: 252 VDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQEL 311
                 V  +     D     LP+ H+           +G ++                +
Sbjct: 202 WASTIDVRYR-----DRLLLPLPMFHVAALTTVIFSAMRGVTL----------------I 240
Query: 312 KPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDS 371
               F    +V+  I   +  ++  GGA+   L          N  + +P+      LD+
Sbjct: 241 SMPQFDAT-KVWSLI---VEERVCIGGAVPAIL----------NFMRQVPEFAE---LDA 283
Query: 372 LVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPL--TQGYGLTESCSGCFTSLA 429
             F           +  ++G AP+P   E  +++ +   +   QGY LTESC G    L+
Sbjct: 284 PDF-----------RYFITGGAPMP---EALIKIYAAKNIEVVQGYALTESCGGGTLLLS 329
Query: 430 -DVFNMIGTVG--VPMTTVEARLES--VPEMGYDALSSVPRGEICLRGNTLFSGYYKRPD 484
            D     G+ G     T V  R +   + E G         GE+ ++ + L   Y+ RP+
Sbjct: 330 EDALRKAGSAGRATMFTDVAVRGDDGVIREHG--------EGEVVIKSDILLKEYWNRPE 381
Query: 485 LTEEVIVDGWFHTG 498
            T +   +GWF TG
Sbjct: 382 ATRDAFDNGWFRTG 395

>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score = 65.9 bits (159), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 97/439 (22%), Positives = 169/439 (38%), Gaps = 82/439 (18%)
Query: 76  VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDT 135
           V  +Y E  + +   G A+++ G+    R  +   NC E+ I + A     +   P  + 
Sbjct: 51  VDYSYAEYLEKSCXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEI 110
Query: 136 LGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELG 195
                +   +  ++ +I F  +  +  +++ + +    +KTIV   +       + +  G
Sbjct: 111 YTLRELVHSLGISKPTIVFSSKKGLDKVIT-VQKTVTTIKTIVILDS-------KVDYRG 162
Query: 196 VSCFSWEEFLQLGTLDCELPP------------KKKTNISTIMYTSGTTGEPKGVVLTNQ 243
             C   + F++  T     PP             +K  ++ IM +SG+TG PKGV LT++
Sbjct: 163 YQCL--DTFIKRNT-----PPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHE 215
Query: 244 AIVAEVLSV-DQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW-RGDV 301
            IV       D ++   G   S      + +P  H +        +  G  +    + D 
Sbjct: 216 NIVTRFSHARDPIY---GNQVSPGTAVLTVVPFHHGFGMFTTLGYLICGFRVVMLTKFDE 272
Query: 302 RYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMP 361
              ++ +Q+ K T    VP ++      I NK            E    Y L N      
Sbjct: 273 ETFLKTLQDYKCTSVILVPTLF-----AILNK-----------SELLNKYDLSN------ 310
Query: 362 QNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAP-LTQGYGLTES 420
                                  L  + SG APL   V E +      P + QGYGLTE+
Sbjct: 311 -----------------------LVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTET 347
Query: 421 CSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYY 480
            S    +  +  +  G  G  +   +A++  +      +L    RGE+C++G  L  GY 
Sbjct: 348 TSAIIIT-PEGDDKPGASGKVVPLFKAKVIDLDTK--KSLGPNRRGEVCVKGPMLMKGYV 404
Query: 481 KRPDLTEEVI-VDGWFHTG 498
             P+ T+E+I  +GW HTG
Sbjct: 405 NNPEATKELIDEEGWLHTG 423

>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396

Iteration: 1
 Score = 65.9 bits (159), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 94/434 (21%), Positives = 159/434 (36%), Gaps = 91/434 (20%)
Query: 76  VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDT 135
           V +TY ++   A R    + + G+  GDR  +   N  E+              VP+   
Sbjct: 28  VRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTR 87
Query: 136 LGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKK----EA 191
           L A  V FI++ +   +        P ++  +        T+  +    S  ++     A
Sbjct: 88  LAAPEVSFILSDSGSKVVIYGAPSAP-VIDAIRAQADPPGTVTDWIGADSLAERLRSAAA 146
Query: 192 EELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLS 251
           +E  V C   +                      IMYTSGTTG PKGVV T++++ +   S
Sbjct: 147 DEPAVECGGDDNLF-------------------IMYTSGTTGHPKGVVHTHESVHSAASS 187
Query: 252 VDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQEL 311
                 V  +     D     LP+ H+           +G ++                +
Sbjct: 188 WASTIDVRYR-----DRLLLPLPMFHVAALTTVIFSAMRGVTL----------------I 226
Query: 312 KPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDS 371
               F    +V+  I   +  ++  GGA+   L          N  + +P+      LD+
Sbjct: 227 SMPQFDAT-KVWSLI---VEERVCIGGAVPAIL----------NFMRQVPEFAE---LDA 269
Query: 372 LVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPL--TQGYGLTESCSGCFTSLA 429
             F           +  ++G AP+P   E  +++ +   +   QGY LTESC G    L+
Sbjct: 270 PDF-----------RYFITGGAPMP---EALIKIYAAKNIEVVQGYALTESCGGGTLLLS 315
Query: 430 -DVFNMIGTVG--VPMTTVEARLES--VPEMGYDALSSVPRGEICLRGNTLFSGYYKRPD 484
            D     G+ G     T V  R +   + E G         GE+ ++ + L   Y+ RP+
Sbjct: 316 EDALRKAGSAGRATMFTDVAVRGDDGVIREHG--------EGEVVIKSDILLKEYWNRPE 367
Query: 485 LTEEVIVDGWFHTG 498
            T +   +GWF TG
Sbjct: 368 ATRDAFDNGWFRTG 381

>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score = 65.9 bits (159), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 97/439 (22%), Positives = 169/439 (38%), Gaps = 82/439 (18%)
Query: 76  VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDT 135
           V  +Y E  + +   G A+++ G+    R  +   NC E+ I + A     +   P  + 
Sbjct: 51  VDYSYAEYLEKSCXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEI 110
Query: 136 LGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELG 195
                +   +  ++ +I F  +  +  +++ + +    +KTIV   +       + +  G
Sbjct: 111 YTLRELVHSLGISKPTIVFSSKKGLDKVIT-VQKTVTTIKTIVILDS-------KVDYRG 162
Query: 196 VSCFSWEEFLQLGTLDCELPP------------KKKTNISTIMYTSGTTGEPKGVVLTNQ 243
             C   + F++  T     PP             +K  ++ IM +SG+TG PKGV LT++
Sbjct: 163 YQCL--DTFIKRNT-----PPGYQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHE 215
Query: 244 AIVAEVLSV-DQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW-RGDV 301
            IV       D ++   G   S      + +P  H +        +  G  +    + D 
Sbjct: 216 NIVTRFSHARDPIY---GNQVSPGTAVLTVVPFHHGFGMFTTLGYLICGFRVVMLTKFDE 272
Query: 302 RYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMP 361
              ++ +Q+ K T    VP ++      I NK            E    Y L N      
Sbjct: 273 ETFLKTLQDYKCTNVILVPTLF-----AILNK-----------SELLNKYDLSN------ 310
Query: 362 QNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAP-LTQGYGLTES 420
                                  L  + SG APL   V E +      P + QGYGLTE+
Sbjct: 311 -----------------------LVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTET 347
Query: 421 CSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYY 480
            S    +  +  +  G  G  +   +A++  +      +L    RGE+C++G  L  GY 
Sbjct: 348 TSAIIIT-PEGDDKPGASGKVVPLFKAKVIDLDTK--KSLGPNRRGEVCVKGPMLMKGYV 404
Query: 481 KRPDLTEEVI-VDGWFHTG 498
             P+ T+E+I  +GW HTG
Sbjct: 405 NNPEATKELIDEEGWLHTG 423

>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582

Iteration: 1
 Score = 62.0 bits (149), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 94/434 (21%), Positives = 165/434 (38%), Gaps = 71/434 (16%)
Query: 76  VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDT 135
           V +TY E ++ A R    M+  G+       +   N  ++ + +       +   P  D 
Sbjct: 83  VNITYSEYFEMACRLAETMKRYGLGLQHHIAVCSENSLQFFMPVCGALFIGVGVAPTNDI 142
Query: 136 LGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELG 195
                +   ++ ++ +I F  +  +  IL    +  +  K ++    + S +    ++  
Sbjct: 143 YNERELYNSLSISQPTIVFCSKRALQKILGVQKKLPIIQKIVI----LDSREDYMGKQ-- 196
Query: 196 VSCFSW-EEFLQLGTLDCELPPK---KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLS 251
            S +S+ E  L  G  + +  P    ++T  + IM +SG+TG PKGV LT++ I      
Sbjct: 197 -SMYSFIESHLPAGFNEYDYIPDSFDRETATALIMNSSGSTGLPKGVELTHKNICVRFSH 255
Query: 252 V-DQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGF-WRGDVRYLMEDIQ 309
             D +F   G     +    + +P  H +        +  G  I   +R +    +  +Q
Sbjct: 256 CRDPVF---GNQIIPDTAILTVIPFHHGFGMFTTLGYLTCGFRIVLMYRFEEELFLRSLQ 312
Query: 310 ELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLL 369
           + K                     I S   L   LF F                  + L+
Sbjct: 313 DYK---------------------IQSA-LLVPTLFSFF---------------AKSTLV 335
Query: 370 DSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAP-LTQGYGLTESCSGCFTSL 428
           D    S + E        + SG APL   V E +      P + QGYGLTE+ S    + 
Sbjct: 336 DKYDLSNLHE--------IASGGAPLAKEVGEAVAKRFKLPGIRQGYGLTETTSAIIITP 387
Query: 429 ADVFNMIGTVG--VPMTTVE-ARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDL 485
               +  G  G  VP  + +   L++   +G +      RGE+C++G  +  GY   P+ 
Sbjct: 388 RGRDDKPGACGKVVPFFSAKIVDLDTGKTLGVNQ-----RGELCVKGPMIMKGYVNNPEA 442
Query: 486 TEEVI-VDGWFHTG 498
           T  +I  DGW H+G
Sbjct: 443 TSALIDKDGWLHSG 456

>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 92/433 (21%), Positives = 164/433 (37%), Gaps = 90/433 (20%)
Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           ++Y E+   A R  + + +RG+  GDR         E ++   A       Y+PL     
Sbjct: 29  ISYAELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVYLPLNTAYT 88
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
            + +++ I  AE           P I+ C P     +  I +    +           ++
Sbjct: 89  LHELDYFITDAE-----------PXIVVCDPSXRDGIAAIAAXVGATVETLGPDGRGSLT 137
Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV 257
             +        T+D     +   +++ I+YTSGTTG   G +L++  + +  L++   + 
Sbjct: 138 DAAAGASEAFATID-----RGADDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWR 192
Query: 258 VTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIG-FWRGDVRYLM----EDIQEL- 311
            T      +D     LP+ H       TH +    ++  F RG + +L     + I +L 
Sbjct: 193 FT-----PDDVLIHALPIYH-------THGLFVASNVTLFARGSMIFLPXFDPDXILDLM 240
Query: 312 -KPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLD 370
            + T+  GVP  Y R+                                            
Sbjct: 241 ARATVLMGVPTFYTRL-------------------------------------------- 256
Query: 371 SLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLAD 430
            L   ++     G ++  +SG+APL           +G  + + YG+TE+     ++  D
Sbjct: 257 -LQSPRLTXETTGHMRLFISGSAPLLADTHREWSAXTGHAVLERYGMTETNMNT-SNPYD 314
Query: 431 VFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICL---RGNTLFSGYYKRPDLT- 486
              + G VG  +  V AR+   PE G +    +PRG+I +    G  +F GY++ P+ T 
Sbjct: 315 GDRVPGAVGPALPGVSARVTD-PETGXE----LPRGDIGMIEVXGPNVFXGYWRMPEXTX 369
Query: 487 EEVIVDGWFHTGK 499
            E   DG+F TG 
Sbjct: 370 SEFRDDGFFITGD 382

>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 92/433 (21%), Positives = 164/433 (37%), Gaps = 90/433 (20%)
Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           ++Y E+   A R  + + +RG+  GDR         E ++   A       Y+PL     
Sbjct: 29  ISYAELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVYLPLNTAYT 88
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
            + +++ I  AE           P I+ C P     +  I +    +           ++
Sbjct: 89  LHELDYFITDAE-----------PXIVVCDPSXRDGIAAIAAXVGATVETLGPDGRGSLT 137
Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV 257
             +        T+D     +   +++ I+YTSGTTG   G +L++  + +  L++   + 
Sbjct: 138 DAAAGASEAFATID-----RGADDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWR 192
Query: 258 VTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIG-FWRGDVRYLM----EDIQEL- 311
            T      +D     LP+ H       TH +    ++  F RG + +L     + I +L 
Sbjct: 193 FT-----PDDVLIHALPIYH-------THGLFVASNVTLFARGSMIFLPXFDPDXILDLM 240
Query: 312 -KPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLD 370
            + T+  GVP  Y R+                                            
Sbjct: 241 ARATVLMGVPTFYTRL-------------------------------------------- 256
Query: 371 SLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLAD 430
            L   ++     G ++  +SG+APL           +G  + + YG+TE+     ++  D
Sbjct: 257 -LQSPRLTXETTGHMRLFISGSAPLLADTHREWSAXTGHAVLERYGMTETNMNT-SNPYD 314
Query: 431 VFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICL---RGNTLFSGYYKRPDLT- 486
              + G VG  +  V AR+   PE G +    +PRG+I +    G  +F GY++ P+ T 
Sbjct: 315 GDRVPGAVGPALPGVSARVTD-PETGXE----LPRGDIGMIEVXGPNVFXGYWRMPEXTX 369
Query: 487 EEVIVDGWFHTGK 499
            E   DG+F TG 
Sbjct: 370 SEFRDDGFFITGD 382

>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 92/433 (21%), Positives = 164/433 (37%), Gaps = 90/433 (20%)
Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           ++Y E+   A R  + + +RG+  GDR         E ++   A       Y+PL     
Sbjct: 29  ISYAELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVYLPLNTAYT 88
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
            + +++ I  AE           P I+ C P     +  I +    +           ++
Sbjct: 89  LHELDYFITDAE-----------PXIVVCDPSXRDGIAAIAAXVGATVETLGPDGRGSLT 137
Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV 257
             +        T+D     +   +++ I+YTSGTTG   G +L++  + +  L++   + 
Sbjct: 138 DAAAGASEAFATID-----RGADDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWR 192
Query: 258 VTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIG-FWRGDVRYLM----EDIQEL- 311
            T      +D     LP+ H       TH +    ++  F RG + +L     + I +L 
Sbjct: 193 FT-----PDDVLIHALPIYH-------THGLFVASNVTLFARGSMIFLPXFDPDXILDLM 240
Query: 312 -KPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLD 370
            + T+  GVP  Y R+                                            
Sbjct: 241 ARATVLMGVPTFYTRL-------------------------------------------- 256
Query: 371 SLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLAD 430
            L   ++     G ++  +SG+APL           +G  + + YG+TE+     ++  D
Sbjct: 257 -LQSPRLTXETTGHMRLFISGSAPLLADTHREWSAXTGHAVLERYGMTETNMNT-SNPYD 314
Query: 431 VFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICL---RGNTLFSGYYKRPDLT- 486
              + G VG  +  V AR+   PE G +    +PRG+I +    G  +F GY++ P+ T 
Sbjct: 315 GDRVPGAVGPALPGVSARVTD-PETGXE----LPRGDIGMIEVXGPNVFXGYWRMPEXTX 369
Query: 487 EEVIVDGWFHTGK 499
            E   DG+F TG 
Sbjct: 370 SEFRDDGFFITGD 382

>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 93/432 (21%), Positives = 154/432 (35%), Gaps = 90/432 (20%)
Query: 76  VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDT 135
           V LT+++    A R  S +   GV+ GDR  I   NC E I  + A        +P+   
Sbjct: 30  VRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAILLPVNYR 89
Query: 136 LGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELG 195
           L A+ + F++     S+     +    +   LP          S   V     K+A  +G
Sbjct: 90  LNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLP----------SLGGV-----KKAYAIG 134
Query: 196 VSCFSWEEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQ 254
                +  F  L +      P     +   I++T+   G P+G +++   ++     + Q
Sbjct: 135 DGSGPFAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLL-----IAQ 189
Query: 255 MFVVTGKVCSEEDTYFSFLPLAHIYD-QIIETHCIHKGCSIGFWRGDVRYLMEDIQELKP 313
             +V     +E D     LPL H+    ++ T     G S+   + D      DI+  K 
Sbjct: 190 SSLVDAWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAAKFDPAQAARDIEAHKV 249
Query: 314 TMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLV 373
           T+ +                            EFA    LGN+      ++AAP      
Sbjct: 250 TVMA----------------------------EFA--PMLGNI-----LDQAAPAQ---- 270
Query: 374 FSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFN 433
            + +R   G             P  +E F      A     +G +E+     ++ A   +
Sbjct: 271 LASLRAVTG----------LDTPETIERFEATCPNATFWATFGQSETSG--LSTFAPYRD 318
Query: 434 MIGTVGVPM-----TTVEARLESVP--EMGYDALSSVPRGEICLRGNTLFSGYYKRPDLT 486
              + G P+       V+A    +P  E+G          EI LRG T+F GY+     T
Sbjct: 319 RPKSAGRPLFWRTVAVVDAEDRPLPPGEVG----------EIVLRGPTVFKGYWNNAAAT 368
Query: 487 EEVIVDGWFHTG 498
           +    +GW HTG
Sbjct: 369 QHAFRNGWHHTG 380

>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase (Fadd1) From Archaeoglobus Fulgidus Length = 549

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 95/423 (22%), Positives = 166/423 (39%), Gaps = 83/423 (19%)
Query: 79  TYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGA 138
            + E+ +   +  S +  +GV  G+  G+   N  +++  + A    A T VP+     +
Sbjct: 54  NFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVXTIYALWRVAATPVPINPXYKS 113
Query: 139 NAVEFIINHAEVSIAFVQ----ENKIPSILSC-LPRCCLYLKTIVSFANVSSSQKKEAEE 193
             +E I+N +E +   V     EN  P +    + R  +    + S + V  S  ++ E 
Sbjct: 114 FELEHILNDSEATTLVVHSXLYENFKPVLEKTGVERVFVVGGEVNSLSEVXDSGSEDFEN 173
Query: 194 LGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVD 253
           + V+                     + +++ I YT GTTG PKGV LT+  + A  L   
Sbjct: 174 VKVN--------------------PEEDVALIPYTGGTTGXPKGVXLTHFNLAANAL--- 210
Query: 254 QMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCS-IGFWRGDVRYLMEDIQELK 312
           Q+ V TG   S  DT     P  H  +  +    +  G   +     +   L E+I++ K
Sbjct: 211 QLAVATG--LSHXDTIVGCXPXFHSAEFGLVNLXVTVGNEYVVXGXFNQEXLAENIEKYK 268
Query: 313 PTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSL 372
            T    VP   + +   + +        S K ++++Y                       
Sbjct: 269 GTFSWAVPPALNVLVNTLES--------SNKTYDWSY----------------------- 297
Query: 373 VFSKIREAFGGRLQAMLSGAAPL-PIHVEEFLRVTSGA------PLTQGYGLTESCSGCF 425
                       L+   +GA P+ P  VE+ L++ +           Q +G TE+C    
Sbjct: 298 ------------LKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGXTEACPXVT 345
Query: 426 TSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDL 485
           T+     +   T GVP + +E ++ S+ E G + L     GEI +RG  +F GY+KR   
Sbjct: 346 TNPPLRLDKSTTQGVPXSDIELKVISL-EDGRE-LGVGESGEIVIRGPNIFKGYWKREKE 403
Query: 486 TEE 488
            +E
Sbjct: 404 NQE 406

>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate Ligases From E. Coli And L. Pneumophila Length = 583

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 80/203 (39%), Gaps = 26/203 (12%)
Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           L YQ +   A      + S  +  GDR  +      E++ A  AC    +  VPL    G
Sbjct: 49  LEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEFVEAFFACQYAGLVAVPLAIPXG 108
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSIL-SCLPRCCLYLKTIVSFANVSSSQKKEAEELGV 196
               +                K+  +L SC P   +     +   N ++    +  EL V
Sbjct: 109 VGQRD------------SWSAKLQGLLASCQPAAIITGDEWLPLVNAAT---HDNPELHV 153
Query: 197 SCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEV--LSVDQ 254
              +W  F  L   D  L      +I+ + YTSG+T  P+GV++T++ + A +  +S D 
Sbjct: 154 LSHAW--FKALPEADVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVXANLRAISHDG 211
Query: 255 MFVVTGKVCSEEDTYFSFLPLAH 277
           + +  G  C       S+LP  H
Sbjct: 212 IKLRPGDRC------VSWLPFYH 228

>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase From Staphylococcus Aureus Subsp. Aureus Mu50 Length = 501

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 61/280 (21%), Positives = 119/280 (42%), Gaps = 65/280 (23%)
Query: 221 NISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDT-YFSFLPLAHIY 279
           +I++IM+TSGTTG  K V  T +   A  +   +       +  + DT + S LP+ HI 
Sbjct: 164 DIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKE------SLGFDRDTNWLSVLPIYHIS 217
Query: 280 DQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGA 339
              +    + +G ++                          R+ D+              
Sbjct: 218 GLSVLLRAVIEGFTV--------------------------RIVDKFN------------ 239
Query: 340 LSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHV 399
            ++++     N ++ ++   +PQ      L+ L+   + E +   LQ +L G A L   +
Sbjct: 240 -AEQILTMIKNERITHISL-VPQT-----LNWLMQQGLHEPYN--LQKILLGGAKLSATM 290
Query: 400 EEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMI-GTVGVPMTTVEARLESVPEMGYD 458
            E   +    P+   +G+TE+CS   T+  ++ +    TVG+P   V+ ++++  + G+ 
Sbjct: 291 IE-TALQYNLPIYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPNKEGH- 348
Query: 459 ALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTG 498
                  GE+ ++G  + +GY    DLT     +G+F+TG
Sbjct: 349 -------GELMIKGANVMNGYLYPTDLT-GTFENGYFNTG 380

>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From Burkholderia Xenovorans Lb400 Length = 529

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 116/299 (38%), Gaps = 42/299 (14%)
Query: 40  AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGV 99
           A +E+P   F  +A     N+   G+       G     TY E+ + A RF SA+R+ GV
Sbjct: 14  ATVEAPPALFNFAAYLFRLNETRAGKTAYIDDTGS---TTYGELEERARRFASALRTLGV 70
Query: 100 NPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEV-----SIAF 154
           +P +R  +   +     +A        +  V     L      +++ H+       S A 
Sbjct: 71  HPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGAL 130
Query: 155 VQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCEL 214
           VQ N   ++ S     C   + IVS       Q +E+E      F  EE +       + 
Sbjct: 131 VQ-NVTQALESAEHDGC---QLIVS-------QPRESEPRLAPLF--EELIDAAAPAAKA 177
Query: 215 PPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLP 274
                 +I+  +Y+SG+TG+PKG V T+    A +    +++       +E D  FS   
Sbjct: 178 AATGCDDIAFWLYSSGSTGKPKGTVHTH----ANLYWTAELYAKPILGIAENDVVFSAAK 233
Query: 275 LAHIYDQIIETHCIHKGCSIGFWRGDVRYLMED----------IQELKPTMFSGVPRVY 323
           L   Y        +  G +     G    LM +          + E +PT+F GVP +Y
Sbjct: 234 LFFAYG-------LGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLY 285

>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609 Length = 652

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 73/176 (41%), Gaps = 18/176 (10%)
Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           ++Y+E++    RF + +   G+  GD   IY    PE  +AM AC      +  ++    
Sbjct: 108 ISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFS 167
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFA----NVSSSQKKEAEE 193
             AV   I  +   +    +  + +  S      + LK  V  A    NV+S +     +
Sbjct: 168 PEAVAGCIIDSSSRLVITADEGVRAGRS------IPLKKNVDDALKNPNVTSVEHVIVLK 221
Query: 194 LGVSCFSWEEFLQLGTLDC--ELPPKKKTNIST------IMYTSGTTGEPKGVVLT 241
              S   W+E   L   D   +  P+ +           I+YTSG+TG+PKGV+ T
Sbjct: 222 RTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHT 277

>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation Length = 652

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 73/176 (41%), Gaps = 18/176 (10%)
Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           ++Y+E++    RF + +   G+  GD   IY    PE  +AM AC      +  ++    
Sbjct: 108 ISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFS 167
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFA----NVSSSQKKEAEE 193
             AV   I  +   +    +  + +  S      + LK  V  A    NV+S +     +
Sbjct: 168 PEAVAGRIIDSSSRLVITADEGVRAGAS------IPLKKNVDDALKNPNVTSVEHVIVLK 221
Query: 194 LGVSCFSWEEFLQLGTLDC--ELPPKKKTNIST------IMYTSGTTGEPKGVVLT 241
              S   W+E   L   D   +  P+ +           I+YTSG+TG+PKGV+ T
Sbjct: 222 RTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHT 277

>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And Coa Bound Length = 652

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 73/176 (41%), Gaps = 18/176 (10%)
Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           ++Y+E++    RF + +   G+  GD   IY    PE  +AM AC      +  ++    
Sbjct: 108 ISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFS 167
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFA----NVSSSQKKEAEE 193
             AV   I  +   +    +  + +  S      + LK  V  A    NV+S +     +
Sbjct: 168 PEAVAGRIIDSSSRLVITADEGVRAGRS------IPLKKNVDDALKNPNVTSVEHVIVLK 221
Query: 194 LGVSCFSWEEFLQLGTLDC--ELPPKKKTNIST------IMYTSGTTGEPKGVVLT 241
              S   W+E   L   D   +  P+ +           I+YTSG+TG+PKGV+ T
Sbjct: 222 RTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHT 277

>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation Length = 652

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 73/176 (41%), Gaps = 18/176 (10%)
Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           ++Y+E++    RF + +   G+  GD   IY    PE  +AM AC      +  ++    
Sbjct: 108 ISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFS 167
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFA----NVSSSQKKEAEE 193
             AV   I  +   +    +  + +  S      + LK  V  A    NV+S +     +
Sbjct: 168 PEAVAGRIIDSSSRLVITADEGVRAGRS------IPLKKNVDDALKNPNVTSVEHVIVLK 221
Query: 194 LGVSCFSWEEFLQLGTLDC--ELPPKKKTNIST------IMYTSGTTGEPKGVVLT 241
              S   W+E   L   D   +  P+ +           I+YTSG+TG+PKGV+ T
Sbjct: 222 RTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHT 277

>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation Length = 652

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 73/176 (41%), Gaps = 18/176 (10%)
Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           ++Y+E++    RF + +   G+  GD   IY    PE  +AM AC      +  ++    
Sbjct: 108 ISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFS 167
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFA----NVSSSQKKEAEE 193
             AV   I  +   +    +  + +  S      + LK  V  A    NV+S +     +
Sbjct: 168 PEAVAGRIIDSSSRLVITADEGVRAGRS------IPLKKNVDDALKNPNVTSVEHVIVLK 221
Query: 194 LGVSCFSWEEFLQLGTLDC--ELPPKKKTNIST------IMYTSGTTGEPKGVVLT 241
              S   W+E   L   D   +  P+ +           I+YTSG+TG+PKGV+ T
Sbjct: 222 RTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHT 277

>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation Length = 652

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 73/176 (41%), Gaps = 18/176 (10%)
Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           ++Y+E++    RF + +   G+  GD   IY    PE  +AM AC      +  ++    
Sbjct: 108 ISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFS 167
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFA----NVSSSQKKEAEE 193
             AV   I  +   +    +  + +  S      + LK  V  A    NV+S +     +
Sbjct: 168 PEAVAGRIIDSSSRLVITADEGVRAGRS------IPLKKNVDDALKNPNVTSVEHVIVLK 221
Query: 194 LGVSCFSWEEFLQLGTLDC--ELPPKKKTNIST------IMYTSGTTGEPKGVVLT 241
              S   W+E   L   D   +  P+ +           I+YTSG+TG+PKGV+ T
Sbjct: 222 RTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHT 277

>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation Length = 652

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 73/176 (41%), Gaps = 18/176 (10%)
Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           ++Y+E++    RF + +   G+  GD   IY    PE  +AM AC      +  ++    
Sbjct: 108 ISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFS 167
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFA----NVSSSQKKEAEE 193
             AV   I  +   +    +  + +  S      + LK  V  A    NV+S +     +
Sbjct: 168 PEAVAGRIIDSSSRLVITADEGVRAGRS------IPLKKNVDDALKNPNVTSVEHVIVLK 221
Query: 194 LGVSCFSWEEFLQLGTLDC--ELPPKKKTNIST------IMYTSGTTGEPKGVVLT 241
              S   W+E   L   D   +  P+ +           I+YTSG+TG+PKGV+ T
Sbjct: 222 RTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHT 277

>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A Nonribosomal Peptide Synthetase Termination Module Length = 1304

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 78/202 (38%), Gaps = 47/202 (23%)
Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           L+Y+E+ + A R    ++  G   G    +Y     E +I +         Y+P+   L 
Sbjct: 490 LSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAYLPVDPKLP 549
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEEL--- 194
                              E++I  +L+     CL               K++A EL   
Sbjct: 550 -------------------EDRISYMLADSAAACLL---------THQEMKEQAAELPYT 581
Query: 195 GVSCF-----SWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEV 249
           G + F      +EE  Q       + P    + + IMYTSGTTG+PKG + T+  I   V
Sbjct: 582 GTTLFIDDQTRFEE--QASDPATAIDP---NDPAYIMYTSGTTGKPKGNITTHANIQGLV 636
Query: 250 LSVDQMFVVTGKVCSEEDTYFS 271
             VD M        S++DT+ S
Sbjct: 637 KHVDYM------AFSDQDTFLS 652

>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1 In A Complex With Amp And Phenylalanine Length = 563

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 41/199 (20%), Positives = 75/199 (37%), Gaps = 34/199 (17%)
Query: 47  QFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCG 106
           Q F +   + PNN  +         V     LTY E+   A +       +G+      G
Sbjct: 43  QLFEEQVSKRPNNVAI---------VCENEQLTYHELNVKANQLARIFIEKGIGKDTLVG 93
Query: 107 IYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSC 166
           I      +  I + A       YVP+        +++I++ ++  +   Q++ +  I + 
Sbjct: 94  IMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHN- 152
Query: 167 LPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIM 226
                +     V      + + +E   L V                   P K T+++ ++
Sbjct: 153 -----IQFNGQVEIFEEDTIKIREGTNLHV-------------------PSKSTDLAYVI 188
Query: 227 YTSGTTGEPKGVVLTNQAI 245
           YTSGTTG PKG +L ++ I
Sbjct: 189 YTSGTTGNPKGTMLEHKGI 207

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	510
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	7e-70
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	7e-67
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	8e-67
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	7e-65
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	7e-65
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	4e-64
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	9e-64
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	1e-62
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	3e-61
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	3e-59
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	4e-59
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	2e-58
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	4e-51
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	6e-49
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	2e-48
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	4e-35
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	2e-31
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	1e-26
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	1e-25
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	3e-24
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	8e-18
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	1e-05
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	2e-11
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	1e-08
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	1e-07
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	4e-04
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	1e-07
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	2e-07
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	2e-06
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	7e-07
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	7e-07
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	2e-06
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	2e-05
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	1e-04
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517

 Score =  231 bits (591), Expect = 7e-70
 Identities = 83/425 (19%), Positives = 136/425 (32%), Gaps = 77/425 (18%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           +TY ++   A R    + + G+  GDR  +   N  E+              VP+   L 
Sbjct: 44  MTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLA 103

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
           A  V FI++ +   +        P I +   +      T+  +                 
Sbjct: 104 APEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADP-PGTVTDWIGAD------------- 149

Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV 257
             S  E L+    D         +   IMYTSGTTG PKGVV T++++ +   S      
Sbjct: 150 --SLAERLRSAAADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTID 207

Query: 258 VTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMF 316
           V        D     LP+ H+           +G ++      D   +   I E +  + 
Sbjct: 208 VR-----YRDRLLLPLPMFHVAALTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIG 262

Query: 317 SGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSK 376
             VP + + +                                        P    L    
Sbjct: 263 GAVPAILNFMR-------------------------------------QVPEFAELDAPD 285

Query: 377 IREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSG-CFTSLADVFNMI 435
            R          ++G AP+P  + +         + QGY LTESC G       D     
Sbjct: 286 FR--------YFITGGAPMPEALIKIYAAK-NIEVVQGYALTESCGGGTLLLSEDALRKA 336

Query: 436 GTVGVPMTTVEARLESVPEMGYDALSSVPR--GEICLRGNTLFSGYYKRPDLTEEVIVDG 493
           G+ G      +  +    + G           GE+ ++ + L   Y+ RP+ T +   +G
Sbjct: 337 GSAGRATMFTDVAV--RGDDGVI----REHGEGEVVIKSDILLKEYWNRPEATRDAFDNG 390

Query: 494 WFHTG 498
           WF TG
Sbjct: 391 WFRTG 395

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509

 Score =  223 bits (570), Expect = 7e-67
 Identities = 78/427 (18%), Positives = 132/427 (30%), Gaps = 84/427 (19%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           LT+++    A R  S +   GV+ GDR  I   NC E I  + A        +P+   L 
Sbjct: 32  LTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAILLPVNYRLN 91

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
           A+ + F++     S+     +    +   LP     +K   +  + S             
Sbjct: 92  ADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGG-VKKAYAIGDGSG------------ 138

Query: 198 CFSWEEFLQL-GTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMF 256
              +  F  L        P     +   I++T+   G P+G +++   ++    S+   +
Sbjct: 139 --PFAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAW 196

Query: 257 VVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTM 315
            +T     E D     LPL H+    +       G +       D      DI+  K T+
Sbjct: 197 RLT-----EADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAAKFDPAQAARDIEAHKVTV 251

Query: 316 FSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFS 375
            +    +   I                                                +
Sbjct: 252 MAEFAPMLGNI---------------------------------------LDQAAPAQLA 272

Query: 376 KIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSG-CFTSLADVFNM 434
            +R        A+     P    +E F      A     +G +E+     F    D    
Sbjct: 273 SLR--------AVTGLDTPET--IERFEATCPNATFWATFGQSETSGLSTFAPYRDR--- 319

Query: 435 IGTVGVPMTTVEARLESVPEMGYDALSSVPR---GEICLRGNTLFSGYYKRPDLTEEVIV 491
             + G P+      +  V          +P    GEI LRG T+F GY+     T+    
Sbjct: 320 PKSAGRPLFWRTVAV--VDAEDRP----LPPGEVGEIVLRGPTVFKGYWNNAAATQHAFR 373

Query: 492 DGWFHTG 498
           +GW HTG
Sbjct: 374 NGWHHTG 380

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503

 Score =  222 bits (569), Expect = 8e-67
 Identities = 87/429 (20%), Positives = 159/429 (37%), Gaps = 84/429 (19%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           ++Y E+   A R  + + +RG+  GDR         E ++   A       Y+PL     
Sbjct: 29  ISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLNTAYT 88

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
            + +++ I  AE  I     +K   I +   +    ++T+                    
Sbjct: 89  LHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLGPDGRG-------------- 134

Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV 257
             S  +     +       +   +++ I+YTSGTTG  KG +L++  + +  L++   + 
Sbjct: 135 --SLTDAAAGASEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWR 192

Query: 258 VTGKVCSEEDTYFSFLPLAHIYDQIIETH-CIHKGCSIGFWRG-DVRYLMEDIQELKPTM 315
            T      +D     LP+ H +   + ++  +    S+ F    D   +++ +   + T+
Sbjct: 193 FT-----PDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPKFDPDKILDLMA--RATV 245

Query: 316 FSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFS 375
             GVP  Y R+                                       +P L      
Sbjct: 246 LMGVPTFYTRLL-------------------------------------QSPRLTKETTG 268

Query: 376 KIREAFGGRLQAMLSGAAPLPIHV-EEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNM 434
            +R          +SG+APL      E+   T G  + + YG+TE+             +
Sbjct: 269 HMR--------LFISGSAPLLADTHREWSAKT-GHAVLERYGMTETNMNTSNPYDGD-RV 318

Query: 435 IGTVGVPMTTVEARLESV-PEMGYDALSSVPR---GEICLRGNTLFSGYYKRPDLTEEVI 490
            G VG  +  V AR+    PE G +    +PR   G I ++G  +F GY++ P+ T+   
Sbjct: 319 PGAVGPALPGVSARV--TDPETGKE----LPRGDIGMIEVKGPNVFKGYWRMPEKTKSEF 372

Query: 491 V-DGWFHTG 498
             DG+F TG
Sbjct: 373 RDDGFFITG 381

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501

 Score =  217 bits (555), Expect = 7e-65
 Identities = 75/457 (16%), Positives = 146/457 (31%), Gaps = 86/457 (18%)

Query: 47  QFFCDSAKRIPNNQML--GGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDR 104
            +    A++  ++  +  G               TYQ +Y  A      +         R
Sbjct: 5   FWLYKQAQQNGHHIAITDGQES-----------YTYQNLYCEASLLAKRL---KAYQQSR 50

Query: 105 CGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSIL 164
            G+Y  N  + II + AC    I    +   L  N +   +   +V + F          
Sbjct: 51  VGLYIDNSIQSIILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGF 110

Query: 165 SCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNIST 224
             +    +           ++        +     +     +    +         +I++
Sbjct: 111 QIVSLDDI---EFAGRDITTNGLLDNTMGIQYDTSNETVVPKESPSNILNTSFNLDDIAS 167

Query: 225 IMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIE 284
           IM+TSGTTG  K V  T +   A  +   +           +  + S LP+ HI    + 
Sbjct: 168 IMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFD-----RDTNWLSVLPIYHISGLSVL 222

Query: 285 THCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKK 343
              + +G ++      +   ++  I+  + T  S VP+  + +                 
Sbjct: 223 LRAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLM---------------- 266

Query: 344 LFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHV-EEF 402
                                   L +              LQ +L G A L   + E  
Sbjct: 267 ---------------------QQGLHEPY-----------NLQKILLGGAKLSATMIETA 294

Query: 403 LRVTSGAPLTQGYGLTESCSG-CFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALS 461
           L+     P+   +G+TE+CS     +   +     TVG+P   V+ ++++ P        
Sbjct: 295 LQY--NLPIYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKN-PNKE----- 346

Query: 462 SVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTG 498
               GE+ ++G  + +GY    D       +G+F+TG
Sbjct: 347 --GHGELMIKGANVMNGYLYPTD-LTGTFENGYFNTG 380

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549

 Score =  218 bits (559), Expect = 7e-65
 Identities = 87/477 (18%), Positives = 165/477 (34%), Gaps = 101/477 (21%)

Query: 46  WQFFCDSAKRIPNN----QMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNP 101
                 +A++                   +      + + E+ +   +  S +  +GV  
Sbjct: 22  ADRIDAAAEKFGEKTAIISAEPKFPSEFPES-----MNFLEICEVTKKLASGISRKGVRK 76

Query: 102 GDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP 161
           G+  G+   N  ++++ + A    A T VP+     +  +E I+N +E +   V      
Sbjct: 77  GEHVGVCIPNSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYE 136

Query: 162 SILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPP-KKKT 220
           +    L +    ++ +                +G    S  E +  G+ D E      + 
Sbjct: 137 NFKPVLEKTG--VERVFV--------------VGGEVNSLSEVMDSGSEDFENVKVNPEE 180

Query: 221 NISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD 280
           +++ I YT GTTG PKGV+LT+  + A  L +     ++       DT    +P+ H  +
Sbjct: 181 DVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSH-----MDTIVGCMPMFHSAE 235

Query: 281 QIIETHCIHKGCSI----GFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISS 336
             +    +  G        F   +   L E+I++ K T    VP   +            
Sbjct: 236 FGLVNLMVTVGNEYVVMGMF---NQEMLAENIEKYKGTFSWAVPPALN------------ 280

Query: 337 GGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLP 396
              L                      N       +  +S ++           +GA P+ 
Sbjct: 281 --VLV---------------------NTLESSNKTYDWSYLK--------VFATGAWPVA 309

Query: 397 IHVEE-FLRVT------SGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARL 449
             + E  L++             Q +G+TE+C    T+     +   T GVPM+ +E ++
Sbjct: 310 PALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLRLDKSTTQGVPMSDIELKV 369

Query: 450 ESVPEMGYDALSSVPR---GEICLRGNTLFSGYYKRPDLTEEVIV-----DGWFHTG 498
                +  +    +     GEI +RG  +F GY+KR    +E          +F TG
Sbjct: 370 -----ISLEDGRELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTG 421

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548

 Score =  216 bits (553), Expect = 4e-64
 Identities = 89/469 (18%), Positives = 161/469 (34%), Gaps = 87/469 (18%)

Query: 46  WQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRC 105
                   +R      +       G        +Y E  + +   G A+++ G+    R 
Sbjct: 26  GTQLRKYMERYAKLGAIAFTNAVTGVD-----YSYAEYLEKSCCLGKALQNYGLVVDGRI 80

Query: 106 GIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILS 165
            +   NC E+ I + A     +   P  +      +   +  ++ +I F  +  +  +++
Sbjct: 81  ALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVIT 140

Query: 166 CLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDC-------ELPPKK 218
                      ++  + V                  + F++  T           +   +
Sbjct: 141 VQKTVTTIKTIVILDSKVDYR----------GYQCLDTFIKRNTPPGFQASSFKTVEVDR 190

Query: 219 KTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHI 278
           K  ++ IM +SG+TG PKGV LT++ IV             G   S      + +P  H 
Sbjct: 191 KEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPI--YGNQVSPGTAVLTVVPFHHG 248

Query: 279 YDQIIETHCIHKGCSI----GFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKI 334
           +        +  G  +     F   D    ++ +Q+ K T    VP ++           
Sbjct: 249 FGMFTTLGYLICGFRVVMLTKF---DEETFLKTLQDYKCTSVILVPTLFA---------- 295

Query: 335 SSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAP 394
                L+K                       + LL+    S +          + SG AP
Sbjct: 296 ----ILNK-----------------------SELLNKYDLSNLV--------EIASGGAP 320

Query: 395 LPIHV-EEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEAR---LE 450
           L   V E   R  +   + QGYGLTE+ S    +        G  G  +   +A+   L+
Sbjct: 321 LSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDK-PGASGKVVPLFKAKVIDLD 379

Query: 451 SVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTG 498
           +   +G +      RGE+C++G  L  GY   P+ T+E+I  +GW HTG
Sbjct: 380 TKKSLGPNR-----RGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTG 423

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536

 Score =  215 bits (550), Expect = 9e-64
 Identities = 91/467 (19%), Positives = 157/467 (33%), Gaps = 89/467 (19%)

Query: 46  WQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRC 105
             +  ++     +   L     ++G V      TY +V   A R  S +   G+  GD  
Sbjct: 25  HSYVLENLSNHSSKPCL--INGANGDV-----YTYADVELTARRVASGLNKIGIQQGDVI 77

Query: 106 GIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILS 165
            ++  + PE+++A    + +               +      +   +   Q      +  
Sbjct: 78  MLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKD 137

Query: 166 CLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTI 225
                 + +  + S  +               C  + E  Q    +         ++  +
Sbjct: 138 FARESDVKVMCVDSAPD--------------GCLHFSELTQADENEAPQVDISPDDVVAL 183

Query: 226 MYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIET 285
            Y+SGTTG PKGV+LT++ ++  V                ED     LP+ HIY      
Sbjct: 184 PYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYF-HSEDVILCVLPMFHIYALNSIM 242

Query: 286 HC-IHKGCSI----GFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGAL 340
            C +  G  I     F   ++  L+  I++ K ++   VP V                ++
Sbjct: 243 LCGLRVGAPILIMPKF---EIGSLLGLIEKYKVSIAPVVPPVMM--------------SI 285

Query: 341 SKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHV- 399
           +K                       +P LD    S +R         + SG APL   + 
Sbjct: 286 AK-----------------------SPDLDKHDLSSLR--------MIKSGGAPLGKELE 314

Query: 400 EEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNM----IGTVGVPMTTVEARL---ESV 452
           +        A L QGYG+TE+       LA          G  G  +   E ++   E+ 
Sbjct: 315 DTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETG 374

Query: 453 PEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTG 498
             +  +       GEIC+RG+ +  GY   P+ T   I  +GW HTG
Sbjct: 375 ASLPRNQ-----PGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTG 416

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550

 Score =  212 bits (543), Expect = 1e-62
 Identities = 88/437 (20%), Positives = 158/437 (36%), Gaps = 82/437 (18%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           +TY E ++ ++R   AM+  G+N   R  +   N  ++ + +       +   P  D   
Sbjct: 51  ITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYN 110

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
              +   +N ++ ++ FV +  +  IL+   +  +  K I+           +++     
Sbjct: 111 ERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIM----------DSKTDYQG 160

Query: 198 CFSWEEFLQ----LGTLDCELPPKK---KTNISTIMYTSGTTGEPKGVVLTNQAIVAEVL 250
             S   F+      G  + +  P+       I+ IM +SG+TG PKGV L ++       
Sbjct: 161 FQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFS 220

Query: 251 SVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSI----GFWRGDVRYLME 306
                  + G     +    S +P  H +        +  G  +     F   +    + 
Sbjct: 221 HARD--PIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRF---EEELFLR 275

Query: 307 DIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAA 366
            +Q+ K      VP ++                 +K                       +
Sbjct: 276 SLQDYKIQSALLVPTLFS--------------FFAK-----------------------S 298

Query: 367 PLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHV-EEFLRVTSGAPLTQGYGLTESCSGCF 425
            L+D    S +          + SG APL   V E   +      + QGYGLTE+ S   
Sbjct: 299 TLIDKYDLSNLH--------EIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAIL 350

Query: 426 TSLADVFNMIGTVGVPMTTVEAR---LESVPEMGYDALSSVPRGEICLRGNTLFSGYYKR 482
            +        G VG  +   EA+   L++   +G +      RGE+C+RG  + SGY   
Sbjct: 351 ITPEGDDK-PGAVGKVVPFFEAKVVDLDTGKTLGVNQ-----RGELCVRGPMIMSGYVNN 404

Query: 483 PDLTEEVIV-DGWFHTG 498
           P+ T  +I  DGW H+G
Sbjct: 405 PEATNALIDKDGWLHSG 421

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504

 Score =  208 bits (531), Expect = 3e-61
 Identities = 69/427 (16%), Positives = 127/427 (29%), Gaps = 78/427 (18%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           LT+ E+        + + + G+ P  R  +   N  + +IA+ A +        L   L 
Sbjct: 30  LTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLK 89

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
           +  +  +I   E++ A +       +   + +     + I                  + 
Sbjct: 90  SAELAELIKRGEMTAAVIAVG--RQVADAIFQSGSGARIIF-----------------LG 130

Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV 257
               +          E P ++    + I YTSGTTG PK  ++  +A  + VL +     
Sbjct: 131 DLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV- 189

Query: 258 VTGKVCSEEDTYFSFLPLAHIYDQIIETH-CIHKGCSIGFWRG-DVRYLMEDIQELKPTM 315
             G      +     +PL H+          +    +            ++ +Q+ + T 
Sbjct: 190 --GLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTS 247

Query: 316 FSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFS 375
               P   D                                           L  +   +
Sbjct: 248 LFATPTHLDA------------------------------------------LAAAAAHA 265

Query: 376 KIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMI 435
                    L+ +    A +P  V E +           YG TE+ +  +          
Sbjct: 266 GSSLKLD-SLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPKT---- 320

Query: 436 GTVGVPMTTVEARLESVPEMGYDALSSVPR---GEICLRG-NTLFSGYYKRPDLTEEVIV 491
           GT   P    E R+  V   G      V     GE+ +   ++ F GY  +P  T E + 
Sbjct: 321 GTEMAPGFFSEVRI--VRIGG-GVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQ 377

Query: 492 DGWFHTG 498
           DGW+ T 
Sbjct: 378 DGWYRTS 384

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505

 Score =  202 bits (517), Expect = 3e-59
 Identities = 89/426 (20%), Positives = 147/426 (34%), Gaps = 92/426 (21%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           LTY E+  AA        +  +    R  ++ +   E  +A+ A     +  VPL    G
Sbjct: 49  LTYAELAAAAGAT-----AGRIGGAGRVAVWATPAMETGVAVVAALLAGVAAVPLNPKSG 103

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
              +  I++ +  S+                                           + 
Sbjct: 104 DKELAHILSDSAPSLVLAPP-------------------------------DAELPPALG 132

Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV 257
                +                 + + ++YTSGTTG PKG V+  +A+   + ++   + 
Sbjct: 133 ALERVDVDVRARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQ 192

Query: 258 VTGKVCSEEDTYFSFLPLAHIYDQIIETHC-IHKGCSIGFWRG-DVRYLMEDIQELKPTM 315
            T      ED     LPL H++  ++     + +G S+             ++ +   TM
Sbjct: 193 WT-----GEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAARELND-GATM 246

Query: 316 FSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFS 375
             GVP +Y R                                          + ++L   
Sbjct: 247 LFGVPTMYHR------------------------------------------IAETLPAD 264

Query: 376 KIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMI 435
                     + ++SG+A LP+H  E +   +G  + + YG+TE+     +  AD     
Sbjct: 265 PELAKALAGARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNT-SVRADGEPRA 323

Query: 436 GTVGVPMTTVEARLESVPEMGYDALSSVP--RGEICLRGNTLFSGYYKRPDLTEEVIV-D 492
           GTVGVP+  VE RL  V E G    +      GEI +RG  LF+ Y  RPD T      D
Sbjct: 324 GTVGVPLPGVELRL--VEEDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTED 381

Query: 493 GWFHTG 498
           G+F TG
Sbjct: 382 GFFRTG 387

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529

 Score =  203 bits (518), Expect = 4e-59
 Identities = 85/463 (18%), Positives = 142/463 (30%), Gaps = 89/463 (19%)

Query: 47  QFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCG 106
            +     +            + D         TY E+ + A RF SA+R+ GV+P +R  
Sbjct: 27  AYLFRLNETRAGKTAY----IDDTGS-----TTYGELEERARRFASALRTLGVHPEERIL 77

Query: 107 IYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSC 166
           +   +     +A        +  V     L      +++ H+           + ++   
Sbjct: 78  LVMLDTVALPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQA 137

Query: 167 LPRC-CLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTI 225
           L        + IVS         +  E        +EE +       +       +I+  
Sbjct: 138 LESAEHDGCQLIVS---------QPRESEPRLAPLFEELIDAAAPAAKAAATGCDDIAFW 188

Query: 226 MYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVC---SEEDTYFSFLPLAHIYDQI 282
           +Y+SG+TG+PKG V T+  +            +  K     +E D  FS   L   Y   
Sbjct: 189 LYSSGSTGKPKGTVHTHANLYW-------TAELYAKPILGIAENDVVFSAAKLFFAYGLG 241

Query: 283 IETH-CIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGA 339
                 +  G +            +   + E +PT+F GVP       T           
Sbjct: 242 NGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVP-------T----------- 283

Query: 340 LSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHV 399
                    Y   L            +P L +     IR           S    LP  +
Sbjct: 284 --------LYANML-----------VSPNLPARADVAIRIC--------TSAGEALPREI 316

Query: 400 -EEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYD 458
            E F     G  +  G G TE     F S        GT G P+   E  L    E G+ 
Sbjct: 317 GERFTAHF-GCEILDGIGSTE-MLHIFLSNRAGAVEYGTTGRPVPGYEIEL--RDEAGHA 372

Query: 459 ALSSVPR---GEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTG 498
               VP    G++ ++G +    Y+   + +    +  W  +G
Sbjct: 373 ----VPDGEVGDLYIKGPSAAVMYWNNREKSRATFLGEWIRSG 411

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979

 Score =  207 bits (530), Expect = 2e-58
 Identities = 101/470 (21%), Positives = 162/470 (34%), Gaps = 87/470 (18%)

Query: 46  WQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRC 105
             +   +         L      +G  G     TY +V+  + +  +     GVN  D  
Sbjct: 64  HDYIFQNISEFATKPCL-----INGPTGHV--YTYSDVHVISRQIAANFHKLGVNQNDVV 116

Query: 106 GIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILS 165
            +   NCPE++++  A + +  T            +      +   +   +   +  I  
Sbjct: 117 MLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKP 176

Query: 166 CLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTN---I 222
                 + +  I    +V   +          C  + E  Q  T   E+    + +   +
Sbjct: 177 LQNDDGVVIVCIDDNESVPIPE---------GCLRFTELTQSTTEASEVIDSVEISPDDV 227

Query: 223 STIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQI 282
             + Y+SGTTG PKGV+LT++ +V  V                +D     LP+ HIY   
Sbjct: 228 VALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYF-HSDDVILCVLPMFHIYALN 286

Query: 283 IETHC-IHKGCSI----GFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSG 337
               C +  G +I     F   ++  L+E IQ  K T+   VP +               
Sbjct: 287 SIMLCGLRVGAAILIMPKF---EINLLLELIQRCKVTVAPMVPPIVL------------- 330

Query: 338 GALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPI 397
            A++K                       +   +    S IR         + SGAAPL  
Sbjct: 331 -AIAK-----------------------SSETEKYDLSSIR--------VVKSGAAPLGK 358

Query: 398 HV-EEFLRVTSGAPLTQGYGLTESCSGCFTSLA----DVFNMIGTVGVPMTTVEARLESV 452
            + +        A L QGYG+TE+      SL           G  G  +   E ++   
Sbjct: 359 ELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVD- 417

Query: 453 PEMGYDALSSVP---RGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTG 498
           P+ G     S+     GEIC+RG+ +  GY   P  T E I  DGW HTG
Sbjct: 418 PDTG----DSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTG 463

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617

 Score =  183 bits (466), Expect = 4e-51
 Identities = 67/434 (15%), Positives = 124/434 (28%), Gaps = 81/434 (18%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           L+Y+E+  AA     ++R +G+ PG+   +   N  E  I   A     +  V    +  
Sbjct: 51  LSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVLALFSHQ 110

Query: 138 ANAVEFIINHAEVSIAFVQENKIPS----ILSCLPRCCLYLKTIVSFANVSSSQKKEAEE 193
            + +    +  E ++               L+        ++ +                
Sbjct: 111 RSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLN------------ 158

Query: 194 LGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVD 253
                 + ++ +     D    P     ++    + GTTG PK +  T+      V    
Sbjct: 159 -DSGEHNLQDAINHPAEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSV 217

Query: 254 QMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETH--CIHKGCSIGFWRG-DVRYLMEDIQE 310
           ++   T     ++  Y   +P AH Y             G ++              I++
Sbjct: 218 EICQFT-----QQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEK 272

Query: 311 LKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLD 370
            +  + + VP                                                  
Sbjct: 273 HQVNVTALVPPAVSLWL-----------------------------------QALIEGES 297

Query: 371 SLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLAD 430
               +         L+ +  G A L   +   +    G  L Q +G+ E     +T L D
Sbjct: 298 RAQLA--------SLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAE-GLVNYTRLDD 348

Query: 431 VFNMI-GTVGVPMT-TVEARLESVPEMGYDALSSVPR---GEICLRGNTLFSGYYKRPDL 485
               I  T G PM    E  +      G      +P+   G +  RG   F GYYK P  
Sbjct: 349 SAEKIIHTQGYPMCPDDEVWV--ADAEGNP----LPQGEVGRLMTRGPYTFRGYYKSPQH 402

Query: 486 TEEVI-VDGWFHTG 498
                  +G++ +G
Sbjct: 403 NASAFDANGFYCSG 416

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539

 Score =  175 bits (447), Expect = 6e-49
 Identities = 80/475 (16%), Positives = 144/475 (30%), Gaps = 112/475 (23%)

Query: 46  WQFFCDSAKRIPNNQML--GGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGD 103
                D A +  +   +  G               +Y+E+   A R  +  +  G+   D
Sbjct: 28  GDLLRDRAAKYGDRIAITCGNTH-----------WSYRELDTRADRLAAGFQKLGIQQKD 76

Query: 104 RCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENK---- 159
           R  +   N  E+   + A        V    +  ++ + +    AE +   + +      
Sbjct: 77  RVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFD 136

Query: 160 ----IPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELP 215
                  + S LP     LK I+           EAEE       +     L T   +LP
Sbjct: 137 YRSLARQVQSKLP----TLKNIIVAG--------EAEE-------FLPLEDLHTEPVKLP 177

Query: 216 PKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPL 275
             K ++++ +  + G+TG  K +  T+   +  +    ++  +          Y + LP+
Sbjct: 178 EVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLD-----HSTVYLAALPM 232

Query: 276 AHIYDQIIETH--CIHKGCSI----GFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTG 329
           AH Y          ++ G  +                 I+  K T+ + VP +       
Sbjct: 233 AHNYPLSSPGVLGVLYAGGRVVLSPSP---SPDDAFPLIEREKVTITALVPPLAMVWM-- 287

Query: 330 ISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAML 389
                                               A        S ++         + 
Sbjct: 288 -----------------------------------DAASSRRDDLSSLQ--------VLQ 304

Query: 390 SGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMI-GTVGVPMT-TVEA 447
            G A         ++   G  L Q +G+ E     +T L D   +I  T G PM+   E+
Sbjct: 305 VGGAKFSAEAARRVKAVFGCTLQQVFGMAE-GLVNYTRLDDPEEIIVNTQGKPMSPYDES 363

Query: 448 RLESVPEMGYDALSSVPR---GEICLRGNTLFSGYYKRPDLTEEVIV-DGWFHTG 498
           R+    +   D    V     G +  RG     GYYK  +        DG++ TG
Sbjct: 364 RV--WDDHDRD----VKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTG 412

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544

 Score =  174 bits (444), Expect = 2e-48
 Identities = 65/469 (13%), Positives = 128/469 (27%), Gaps = 96/469 (20%)

Query: 46  WQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRC 105
            +      +  P++  +    +   +      L+Y E+   +    + +  +G+  GD  
Sbjct: 33  TRILTVGVQSHPHSLAI----ICGERQ-----LSYIELDRLSTNLATRLAEKGLGKGDTA 83

Query: 106 GIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQEN----KIP 161
            +   N  E+ I   A     +  +    +     +   I   +  +             
Sbjct: 84  LVQLPNVAEFYIVFFALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNN 143

Query: 162 SILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTN 221
             +  L    L  + I+             +        W E         +        
Sbjct: 144 QFIDSLHDVNLSPEIILML---------NHQATDFGLLDWIE--TPAETFVDFSSTPADE 192

Query: 222 ISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ 281
           ++    + G+TG PK +  T+      V +  ++  +              LP  H +  
Sbjct: 193 VAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLN-----SNTRLLCALPAPHNFML 247

Query: 282 IIETH--CIHKGCSI----GFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKIS 335
                   +H G  +         +       IQ  +  M S VP               
Sbjct: 248 SSPGALGVLHAGGCVVMAPNP---EPLNCFSIIQRHQVNMASLVPSAVIMWL-------- 296

Query: 336 SGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPL 395
                                                    ++         +  G A  
Sbjct: 297 -----------------------------EKAAQYKDQIQSLK--------LLQVGGASF 319

Query: 396 PIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMI-GTVGVPMT-TVEARLESVP 453
           P  +   +       L Q +G+ E     +T L D    I  T G P++   E ++  V 
Sbjct: 320 PESLARQVPEVLNCKLQQVFGMAE-GLVNYTRLDDSDEQIFTTQGRPISSDDEIKI--VD 376

Query: 454 EMGYDALSSVPR---GEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTG 498
           E   +    VP    G +  RG   F GYY+ P+   +V   D ++++G
Sbjct: 377 EQYRE----VPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSG 421

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541

 Score =  136 bits (346), Expect = 4e-35
 Identities = 104/477 (21%), Positives = 157/477 (32%), Gaps = 141/477 (29%)

Query: 67  VSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQA 126
           VS    G     TY EVY  A R    +R+ GV  GDR    G N       +EA     
Sbjct: 37  VSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFR---HLEA----- 88

Query: 127 ITY--VPLYDTLGA-----------NAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLY 173
             Y  VP    +GA             + +I+NHAE  +     N +P + +        
Sbjct: 89  --YFAVPG---MGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGE-LKT 142

Query: 174 LKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTG 233
           ++  V             E+      ++EE L        +P   +     + YT+GTTG
Sbjct: 143 VQHFVVM----------DEKAPEGYLAYEEALGEEADPVRVP---ERAACGMAYTTGTTG 189

Query: 234 EPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCS 293
            PKGVV +++A+V   L+   +        SE+D     +P+ H               +
Sbjct: 190 LPKGVVYSHRALVLHSLAASLVDGTA---LSEKDVVLPVVPMFH--------------VN 232

Query: 294 ------IGFWRG----------DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSG 337
                      G          D   L+E       T  +GVP V+              
Sbjct: 233 AWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVW-------------- 278

Query: 338 GALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPI 397
                                         L D L             + ++ G+A    
Sbjct: 279 -----------------LA-----------LADYL--ESTGHRLKTLRRLVVGGSAAPRS 308

Query: 398 HVEEFLRVTSGAPLTQGYGLTESC---SGCF-------TSLADVFNMIGTVGVPMTTVEA 447
            +  F R+  G  + QGYGLTE+       F        S  +   +    G+P+  V  
Sbjct: 309 LIARFERM--GVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRL 366

Query: 448 RLESVPEMGYDALSSVPR-----GEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTG 498
           R+    E G      VP+     GE+ L+G  +  GYY   + T   +  DG+F TG
Sbjct: 367 RV--ADEEGRP----VPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTG 417

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570

 Score =  126 bits (319), Expect = 2e-31
 Identities = 59/436 (13%), Positives = 137/436 (31%), Gaps = 86/436 (19%)

Query: 78  LTYQEVYDAAIRFGSAMRSR-GVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTL 136
             ++E+ + + +  + +    G+  GDR  +     PEW + +  C    + ++P    +
Sbjct: 74  WNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQM 133

Query: 137 GANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGV 196
            +  + + +  ++       +  I  + +    C   L+  +  +          E+   
Sbjct: 134 KSTDILYRLQMSKAKAIVAGDEVIQEVDTVASEC-PSLRIKLLVS----------EKSCD 182

Query: 197 SCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMF 256
              ++++ L   +             S I +TSGT+G PK    +  ++  +        
Sbjct: 183 GWLNFKKLLNEASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDAGWT 242

Query: 257 VVTGKVCSEEDTYFSFLPLA---HIYDQIIETHCIHKGCSIGFWRG---DVRYLMEDIQE 310
            +        D  ++        +I   ++E      G           D   +++ +  
Sbjct: 243 GLQ-----ASDIMWTISDTGWILNILCSLMEP--WALGACTFVHLLPKFDPLVILKTLSS 295

Query: 311 LKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLD 370
                  G P VY                   ++           +++ +   K      
Sbjct: 296 YPIKSMMGAPIVY-------------------RML----------LQQDLSSYK------ 320

Query: 371 SLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLAD 430
              F  ++          ++    L     E  R  +G  + + YG TE           
Sbjct: 321 ---FPHLQNC--------VTVGESLLPETLENWRAQTGLDIRESYGQTE-TGLTCMVSKT 368

Query: 431 VFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPR---GEICLRGNT-----LFSGYYKR 482
           +    G +G   +  + ++  + + G    + +P    G+I +R        +FSGY   
Sbjct: 369 MKIKPGYMGTAASCYDVQI--IDDKG----NVLPPGTEGDIGIRVKPIRPIGIFSGYVDN 422

Query: 483 PDLTEEVIVDGWFHTG 498
           PD T   I   ++  G
Sbjct: 423 PDKTAANIRGDFWLLG 438

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480

 Score =  109 bits (273), Expect = 1e-25
 Identities = 72/500 (14%), Positives = 136/500 (27%), Gaps = 122/500 (24%)

Query: 53  AKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNC 112
           A+  P++             G  + LT+ ++Y   +     +   G   GDR  I     
Sbjct: 34  ARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQG 92

Query: 113 PEWIIAMEACNSQAITYVPLYDTLGANAVE---FIINHAEVSIAFVQENKIPSILSCLPR 169
            E+++A           VPL    G    E    +++ +         + +  ++  + R
Sbjct: 93  LEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVAR 152

Query: 170 CCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTS 229
                                  E   S    +               +  + + + YTS
Sbjct: 153 --------------------RPGESPPSIIEVDLLDLDAPNGYTFKEDEYPSTAYLQYTS 192

Query: 230 GTTGEPKGVVLTNQAIVAEVLSVDQMFVVT-GKVCSEEDTYFSFLPLAHIYDQIIETH-- 286
           G+T  P GVV+++Q +      +   +      +        S+LP  H    ++     
Sbjct: 193 GSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHDM-GLVIGICA 251

Query: 287 CIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRV-------YDRIYTGISNKISSGGA 339
            I  G            L        P  F   P             ++   N       
Sbjct: 252 PILGGYPA--------VLT------SPVSFLQRPARWMHLMASDFHAFSAAPN------- 290

Query: 340 LSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIH- 398
                  FA+       ++    + A    D      I            SG+  +    
Sbjct: 291 -------FAFELAA---RRTTDDDMAG--RD---LGNILTIL--------SGSERVQAAT 327

Query: 399 VEEFLRVTSGAPLTQ-----GYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEA-RLESV 452
           ++ F    +   L +      Y L E+      + +       TV     ++ A   +  
Sbjct: 328 IKRFADRFARFNLQERVIRPSYWLAEATVYV--ATSKPGQPPETVDFDTESLSAGHAKPC 385

Query: 453 PEMGYDALSSVPR----------------------GEICLRGNTLFSGYYKRPDLTEEVI 490
              G  +L S                         GEI + G+ + +GY+++PD +E   
Sbjct: 386 AGGGATSLISYMLPRSPIVRIVDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTF 445

Query: 491 V------------DGWFHTG 498
                          W  TG
Sbjct: 446 GGKIVTPSPGTPEGPWLRTG 465

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590

 Score =  105 bits (264), Expect = 3e-24
 Identities = 82/470 (17%), Positives = 150/470 (31%), Gaps = 118/470 (25%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           +TY+++   A    + +++ G  PGDR  +  +     I A   C       VP+Y    
Sbjct: 41  MTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVPIYPPAQ 100

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILS-CLPRCCLYLKTIVSFANVSSSQKKEAEELGV 196
              ++                K   I++   P   L +   +     +       + L +
Sbjct: 101 EKLLD----------------KAQRIVTNSKPVIVLMIADHIKKF-TADELNTNPKFLKI 143

Query: 197 SCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMF 256
              + E      +   +    K  +I+ + YTSG+T  PKGV++++  ++  +  +   F
Sbjct: 144 PAIALESIELNRSSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSF 203

Query: 257 VVTGKVCSEEDTYFSFLPLAHIYDQIIETHC--IHKGCSIGFWRGDVRYLMEDIQELKPT 314
            +      +E   FS+LP  H    +I      I+ G            +M       P 
Sbjct: 204 HMN-----DETIIFSWLPPHHDM-GLIGCILTPIYGGIQA--------IMM------SPF 243

Query: 315 MFSGVPRV-------YDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAP 367
            F   P         Y    +G  N              FAY+Y +   K+   + K   
Sbjct: 244 SFLQNPLSWLKHITKYKATISGSPN--------------FAYDYCV---KRIREEKKEG- 285

Query: 368 LLDSLVFSKIREAFGGRLQAMLSGAAPLPIH-VEEFLRVTSGAPLTQ-----GYGLTESC 421
            LD    S    AF        +GA P+    +E F +        +      YGL E+ 
Sbjct: 286 -LD---LSSWVTAF--------NGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEAT 333

Query: 422 SGCFTSLADVFNMIGTVGVPMTTVEA-RLESVPEMGYDALSSV----PR----------- 465
                +     +   T+ +     +  R+    +    +   V    P            
Sbjct: 334 LLV--TGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQEVKIIDPDTL 391

Query: 466 --------GEICLRGNTLFSGYYKRPDLTEEVIV---------DGWFHTG 498
                   GEI ++ N++  GY+ +P+ T                +  TG
Sbjct: 392 IPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTG 441

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score = 85.3 bits (212), Expect = 8e-18
 Identities = 26/176 (14%), Positives = 56/176 (31%), Gaps = 16/176 (9%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
            T++++   + +  +     G+  GD   +   +  ++   M   +      VP    L 
Sbjct: 87  FTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPATHMLK 146

Query: 138 ANAVEFIINHAEVS--IAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELG 195
              + + I  A +   +   +++    +      C      I            E     
Sbjct: 147 TRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAEC----GDIPLKKAKVGGDVLEGWI-- 200

Query: 196 VSCFSWEEFLQLGTLDCELP-PKKKTN---ISTIMYTSGTTGEPKGVVLTNQAIVA 247
                + + L+  +   E P  +  T    I  + ++SGT G PK V   N   + 
Sbjct: 201 ----DFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLG 252

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score = 47.2 bits (113), Expect = 1e-05
 Identities = 30/108 (27%), Positives = 43/108 (39%), Gaps = 16/108 (14%)

Query: 399 VEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYD 458
              FL  T G  L +G+G TE+      +   +    G++G P    +  L  +   G  
Sbjct: 358 FNRFLEFT-GIKLMEGFGQTETVVTI-ATFPWMEPKPGSIGKPTPGYKIEL--MDRDG-- 411

Query: 459 ALSSVPR---GEICLRGNT-----LFSGYYKRPDLTEEVIVDGWFHTG 498
                     GEI +         LF  Y K P+ TEE   DG++HTG
Sbjct: 412 --RLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHDGYYHTG 457

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512

 Score = 65.2 bits (160), Expect = 2e-11
 Identities = 61/443 (13%), Positives = 123/443 (27%), Gaps = 133/443 (30%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAI-----TYVPL 132
           +TY+++ + +      + S   +      +YG   PE II                Y+P+
Sbjct: 27  ITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINF-----LGCVKAGHAYIPV 81

Query: 133 YDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAE 192
             ++ A+ V+ I  ++   +         + L         LK I      ++       
Sbjct: 82  DLSIPADRVQRIAENSGAKLLLSATAVTVTDLPVRIVSEDNLKDIFFTHKGNTP------ 135

Query: 193 ELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSV 252
                             +  +          I+YTSG+TG PKGV +T   +V+     
Sbjct: 136 ----------------NPEHAVKG---DENFYIIYTSGSTGNPKGVQITYNCLVSFTKWA 176

Query: 253 DQMFVVTGKVCSEEDTY-----FSF--------LPL---AHIYDQIIETHCIHKGCSIGF 296
            + F +          +     FSF          L     ++        +        
Sbjct: 177 VEDFNLQ-----TGQVFLNQAPFSFDLSVMDIYPSLVTGGTLW---AIDKDMIA------ 222

Query: 297 WRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNM 356
                + L   +++    +++  P                                    
Sbjct: 223 ---RPKDLFASLEQSDIQVWTSTP------------------------------------ 243

Query: 357 KKGMPQNKAAPLLDSLV-FSKIREAFGGRLQAMLSGAAPLPI-HVEEFLRVTSGAPLTQG 414
                        +  +  +   E+    ++  L     LP     + +     A +   
Sbjct: 244 ----------SFAEMCLMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNT 293

Query: 415 YGLTES--CSGCFTSLADVFNMIGTV--GVPM--TTV---EARLESVPEMGYDALSSVPR 465
           YG TE+           +V +   ++  G       +   +      P  G         
Sbjct: 294 YGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMKEDGTIAP-DG------EK- 345

Query: 466 GEICLRGNTLFSGYYKRPDLTEE 488
           GEI + G ++  GY   P+LTE+
Sbjct: 346 GEIVIVGPSVSVGYLGSPELTEK 368

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Length = 369

 Score = 55.5 bits (133), Expect = 1e-08
 Identities = 41/288 (14%), Positives = 80/288 (27%), Gaps = 40/288 (13%)

Query: 221 NISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD 280
           +   +  + GTTG PK VV  +  I A +      +          +T  +     HI  
Sbjct: 92  SHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGR-PSGNTLAAIPTGPHIVG 150

Query: 281 QIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGAL 340
            I +   +  G        D R++   + E      + V +    +   + N + +    
Sbjct: 151 AINKERALRLGGMFFSIDIDPRWVKRSLSE---GDTATVRKYTHHLVDQVQNTLMNQDI- 206

Query: 341 SKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLV-FSKIREAFGGRLQAMLSGAAPLPIHV 399
            + L                P     P+L  L+   ++       L  +  G   L +  
Sbjct: 207 -RFLV-------------TTP-----PVLRELLKRPEVVLQMKQSLAQITLGGTELNLDE 247

Query: 400 EEFLR--VTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESV-PEMG 456
            +F+   +      +  YG T +     + L    +           +   +  V     
Sbjct: 248 IKFIASEILPDCEFSASYGSTSALGVSRSLLITSESQQVIYDSFSPFITYDV--VDSITA 305

Query: 457 YDALSSVP---RGEIC---LRGNTLFSGYYKRPDLTEEVIVDGWFHTG 498
                 V    RG +    L     +    +R        V G+    
Sbjct: 306 QT----VEYGERGNVIVTHLSPWAFYPRVAERDTAIRLPGVSGFAGDR 349

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304

 Score = 53.8 bits (130), Expect = 1e-07
 Identities = 29/179 (16%), Positives = 58/179 (32%), Gaps = 45/179 (25%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAI-----TYVPL 132
           L+Y+E+ + A R    ++  G   G    +Y     E +I +       +      Y+P+
Sbjct: 490 LSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGI-----LGVLKAGAAYLPV 544

Query: 133 ---Y--DTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQ 187
                 D +      +++  +  +     +     +            T+         +
Sbjct: 545 DPKLPEDRI-----SYMLADSAAACLLTHQ----EMKEQAAELPYTGTTLFIDDQTRFEE 595

Query: 188 KKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIV 246
           +                         + P    + + IMYTSGTTG+PKG + T+  I 
Sbjct: 596 QASD------------------PATAIDPN---DPAYIMYTSGTTGKPKGNITTHANIQ 633

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304

 Score = 42.2 bits (100), Expect = 4e-04
 Identities = 30/114 (26%), Positives = 49/114 (42%), Gaps = 19/114 (16%)

Query: 385 LQAMLSGAAPLPI-HVEEFLRVTSGAPLTQGYGLTES--CSGCFTSLADVFNMIGTV--G 439
           L+ +L G     + HV + LR+     L   YG TE    +     + D+ + I ++  G
Sbjct: 722 LRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHV-VHDLPDSISSLPIG 780

Query: 440 VPM--TTV---EARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEE 488
            P+   +V     + +  P  G         GE+C+ G  +  GY  R DLT+E
Sbjct: 781 KPISNASVYILNEQSQLQP-FG------AV-GELCISGMGVSKGYVNRADLTKE 826

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563

 Score = 53.3 bits (129), Expect = 1e-07
 Identities = 36/207 (17%), Positives = 69/207 (33%), Gaps = 49/207 (23%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAI-----TYVPL 132
           LTY E+   A +       +G+      GI      +  I +      A+      YVP+
Sbjct: 65  LTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGI-----LAVLKAGGAYVPI 119

Query: 133 YDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAE 192
                   +++I++ ++  +   Q+     ++  +       +                 
Sbjct: 120 DIEYPKERIQYILDDSQARMLLTQK----HLVHLIHNIQFNGQVE--------------- 160

Query: 193 ELGVSCFSWEEFLQLGT--LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVL 250
                 F  +         L         T+++ ++YTSGTTG PKG +L ++ I    +
Sbjct: 161 -----IFEEDTIKIREGTNLHVPSKS---TDLAYVIYTSGTTGNPKGTMLEHKGISNLKV 212

Query: 251 SVDQMFVVTGKVCSEEDTY-----FSF 272
             +    VT     E+D        SF
Sbjct: 213 FFENSLNVT-----EKDRIGQFASISF 234

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620

 Score = 52.9 bits (128), Expect = 2e-07
 Identities = 28/174 (16%), Positives = 48/174 (27%), Gaps = 41/174 (23%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAI-----TYVPL 132
           + Y+++ D+A +    +      PG   G+YG    E I  +      AI      Y+ +
Sbjct: 53  VDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCL-----LAILLSGHHYLYI 107

Query: 133 YDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAE 192
                A     +    +  +                                S+    A 
Sbjct: 108 DLKQPAAWNAELCRQVDCRLILDC----------------------------STTPTPAN 139

Query: 193 ELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIV 246
            L                           I+ I ++SGTTG PK +  T+  I 
Sbjct: 140 GLPCVPVRHLPAAPASVARPCFAA---DQIAYINFSSGTTGRPKAIACTHAGIT 190

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620

 Score = 49.4 bits (119), Expect = 2e-06
 Identities = 27/118 (22%), Positives = 38/118 (32%), Gaps = 15/118 (12%)

Query: 379 EAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTES--CSGCFT-SLADVFNMI 435
           +  GG  Q +  G      HV   L       L  GYG TE+   + C   +  D+    
Sbjct: 273 DCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDLEEDD 332

Query: 436 GTVGVPM--TTV---EARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEE 488
             +G  +  T V   +   + + E           GEI   G  L  GY      T  
Sbjct: 333 IPIGKAIAGTAVLLLDEHGQEIAEPD------RA-GEIVAFGAGLAQGYRNDAARTRA 383

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Length = 652

 Score = 51.0 bits (123), Expect = 7e-07
 Identities = 15/45 (33%), Positives = 24/45 (53%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC 122
           ++Y+E++    RF + +   G+  GD   IY    PE  +AM AC
Sbjct: 108 ISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLAC 152

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562

 Score = 50.7 bits (122), Expect = 7e-07
 Identities = 30/184 (16%), Positives = 63/184 (34%), Gaps = 33/184 (17%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAI-----TYVPL 132
            TY+++ + A +  + +    +  G    +           +       I     TYVP+
Sbjct: 56  WTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAFAII-----VGIMKSGNTYVPI 109

Query: 133 YDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAE 192
              L  +   F++  +  ++AFV +N    +        L  K      N+S+       
Sbjct: 110 EAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVELPPETKVLDTKNQSFIENLSTQD----- 164

Query: 193 ELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSV 252
                            +    P       + ++YTSG+TG PKGV ++   + +   + 
Sbjct: 165 --------------TSDILNNYPE---NLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAW 207

Query: 253 DQMF 256
            ++ 
Sbjct: 208 GKLI 211

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521

 Score = 49.1 bits (118), Expect = 2e-06
 Identities = 28/174 (16%), Positives = 58/174 (33%), Gaps = 37/174 (21%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAIT-----YVPL 132
            TY ++   +    + + S  +       ++G+   + +         A+T     Y+P+
Sbjct: 30  RTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATF-----VALTKSGHAYIPV 84

Query: 133 YDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAE 192
                   +  II  A+ S+    E + P  +  +    L                    
Sbjct: 85  DVHSAPERILAIIEIAKPSLIIAIE-EFPLTIEGISLVSL-------------------- 123

Query: 193 ELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIV 246
                       L     +      K  +   I++TSGTTG+PKGV +++  ++
Sbjct: 124 -----SEIESAKLAEMPYER-THSVKGDDNYYIIFTSGTTGQPKGVQISHDNLL 171

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 Length = 663

 Score = 46.4 bits (111), Expect = 2e-05
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 78  LTYQEVYDAAIRFGSAMR-SRGVNPGDRCGIYGSNCPEWIIAMEAC 122
           +TY+E+ +   +    +  S GV  GD   +Y    PE II + A 
Sbjct: 114 ITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAI 159

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511

 Score = 44.0 bits (105), Expect = 1e-04
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 10/53 (18%)

Query: 225 IMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTY-----FSF 272
           I+YTSG+TG PKGV ++   + +    +   F V+         +     FSF
Sbjct: 148 IIYTSGSTGNPKGVQISAANLQSFTDWICADFPVS-----GGKIFLNQAPFSF 195

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511

 Score = 42.5 bits (101), Expect = 3e-04
 Identities = 23/110 (20%), Positives = 37/110 (33%), Gaps = 17/110 (15%)

Query: 388 MLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTES--CSGCFTSLADVFNMIGTV--GVPMT 443
           M  G        +  L     A +   YG TE+           DV +   ++  G    
Sbjct: 266 MFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVISRSESLPVGFAKP 325

Query: 444 TVE-----ARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEE 488
            +         + +P  G         GEI + G ++  GY   P+LTE+
Sbjct: 326 DMNIFIMDEEGQPLP-EG------EK-GEIVIAGPSVSRGYLGEPELTEK 367

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 5e-04
 Identities = 49/349 (14%), Positives = 93/349 (26%), Gaps = 117/349 (33%)

Query: 61  MLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120
           +LG      GK     W+                 S  V       I+      W+  ++
Sbjct: 158 VLGS-----GKT----WVA-----------LDVCLSYKVQCKMDFKIF------WL-NLK 190

Query: 121 ACNSQAITYVP---LYDTLGANAVEFIINHAEVSIAFVQENKIPSILSC---LPRCCLYL 174
            CNS          L   +  N      + + + +           L        C L L
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL 250

Query: 175 KTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGE 234
                  NV +++            +W  F     L C      K               
Sbjct: 251 ------LNVQNAK------------AWNAF----NLSC------KI-------------- 268

Query: 235 PKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSI 294
              ++ T    V + LS      +     S +    +  P     D++            
Sbjct: 269 ---LLTTRFKQVTDFLSAATTTHI-----SLDHHSMTLTP-----DEVKSL--------- 306

Query: 295 GFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLG 354
                 ++YL    Q+L   + +  PR            +S      +       N+K  
Sbjct: 307 -L----LKYLDCRPQDLPREVLTTNPRR-----------LSIIAESIRDGLATWDNWKHV 350

Query: 355 NMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFL 403
           N  K     +++  L+ L  ++ R+ F     ++   +A +P  +   +
Sbjct: 351 NCDKLTTIIESS--LNVLEPAEYRKMF--DRLSVFPPSAHIPTILLSLI 395

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	510
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	100.0
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	100.0
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	100.0
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	100.0
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	100.0
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	100.0
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	100.0
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	100.0
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	100.0
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	100.0
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	100.0
4gr5_A	570	Non-ribosomal peptide synthetase; MBTH-like domain	100.0
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	100.0
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	100.0
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	100.0
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	100.0
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	100.0
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	100.0
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	100.0
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	100.0
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	100.0
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	100.0
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	100.0
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	100.0
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	100.0
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	100.0
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	100.0
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	100.0
4gs5_A	358	Acyl-COA synthetase (AMP-forming)/AMP-acid ligase	100.0
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	99.98
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	99.97
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	99.97
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	99.96
4eql_A	581	4-substituted benzoates-glutamate ligase GH3.12; f	96.09
4b2g_A	609	GH3-1 auxin conjugating enzyme; signaling protein,	94.62
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	91.99
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	91.97
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	90.68
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	86.94
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	82.39
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	82.32
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	81.27

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}

Probab=100.00  E-value=2.3e-61  Score=505.69  Aligned_cols=403  Identities=22%  Similarity=0.262  Sum_probs=339.7

Q ss_pred             CCCCCCCHHHHHHHHHhhCCCCcceeeeeccCC--CCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhH
Q 010455           38 SPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDG--KVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEW  115 (510)
Q Consensus        38 ~~~~~~sl~~~l~~~a~~~p~~~a~~~~~~~~~--~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~  115 (510)
                      .+.+..++.++|+++++++|+++|+++.   ++  ..+..+++||+||.++++++|++|++.|+++||+|+++++|++++
T Consensus        14 ~~~~~~~l~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~   90 (549)
T 3g7s_A           14 LYYPKISLADRIDAAAEKFGEKTAIISA---EPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDY   90 (549)
T ss_dssp             CCCCCCCTTHHHHHHHHHHTTSEEEEEE---SSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH
T ss_pred             CCcCCCCHHHHHHHHHHhCCCceEEEeC---CCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH
Confidence            4455689999999999999999999987   52  123346899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcC
Q 010455          116 IIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELG  195 (510)
Q Consensus       116 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  195 (510)
                      ++++|||+++|++++|++|.++.+++.++++.++++++|++......+.......  ....++..+..            
T Consensus        91 ~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~------------  156 (549)
T 3g7s_A           91 VMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKT--GVERVFVVGGE------------  156 (549)
T ss_dssp             HHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTS--CCCEEEEETCS------------
T ss_pred             HHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhC--CCcEEEEeCCC------------
Confidence            9999999999999999999999999999999999999999998777665544332  24455555432            


Q ss_pred             ceeeeHHHHHHcCCCCCCCCCCCC-CCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecC
Q 010455          196 VSCFSWEEFLQLGTLDCELPPKKK-TNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLP  274 (510)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p  274 (510)
                        ...++++..............+ +++++|+|||||||.||||+++|+++.+.+..+...+     ++...|++++.+|
T Consensus       157 --~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~~~~~p  229 (549)
T 3g7s_A          157 --VNSLSEVMDSGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVAT-----GLSHMDTIVGCMP  229 (549)
T ss_dssp             --SSCHHHHHHHSCSCCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHH-----CCCTTCEEECCSC
T ss_pred             --CcCHHHHHhcCccccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHc-----CCCCCCEEEEeCc
Confidence              2345666655432222233334 8999999999999999999999999999999988877     8889999999999


Q ss_pred             hHHHHHHHHHHHHHhcCcEEEEeCC-CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhh
Q 010455          275 LAHIYDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKL  353 (510)
Q Consensus       275 l~h~~g~~~~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (510)
                      ++|.+++...+.++..|+++++.+. ++..+++.++++++|+++++|+++..+++.......                  
T Consensus       230 ~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~------------------  291 (549)
T 3g7s_A          230 MFHSAEFGLVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNK------------------  291 (549)
T ss_dssp             TTSHHHHHHHTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCC------------------
T ss_pred             HHHHHHHHHHHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcc------------------
Confidence            9999998887789999999999875 999999999999999999999999998764332110                  


Q ss_pred             hhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHh----cC---CCeeeeccccccccceec
Q 010455          354 GNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVT----SG---APLTQGYGLTESCSGCFT  426 (510)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~----~g---~~l~~~yG~tE~~~~~~~  426 (510)
                                       ..++        ++||.+++||+++++++.+++.+.    ++   +.+++.||+||++.+++.
T Consensus       292 -----------------~~~~--------~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~  346 (549)
T 3g7s_A          292 -----------------TYDW--------SYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTT  346 (549)
T ss_dssp             -----------------CCCC--------TTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEEEE
T ss_pred             -----------------cCCc--------cceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccceEeccccchhhhc
Confidence                             0011        389999999999999999999887    56   889999999999988777


Q ss_pred             ccCCCCccCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhh---ccC--ccccCCe-
Q 010455          427 SLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI---VDG--WFHTGKN-  500 (510)
Q Consensus       427 ~~~~~~~~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~---~~g--w~~TGDl-  500 (510)
                      .........+++|+|+++++++|+|.+++++++.|  +.|||+|+||+++.|||++|+.+.+.|   .+|  ||+|||+ 
T Consensus       347 ~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDl~  424 (549)
T 3g7s_A          347 NPPLRLDKSTTQGVPMSDIELKVISLEDGRELGVG--ESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVG  424 (549)
T ss_dssp             CCGGGGGGTTSCCEECTTCEEEEECSSSCCEECTT--CCEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEEEEEEE
T ss_pred             CCccccCcCCCccccCCCCEEEEEeCCCCcCCCCC--CceEEEEECcchhhhhCCChhhhhhhhhccCCCCceEccCcEE
Confidence            65554445589999999999999996777777766  899999999999999999999999998   678  9999999 


Q ss_pred             eeccCCccC
Q 010455          501 PWQYTFKKL  509 (510)
Q Consensus       501 ~~d~dG~~~  509 (510)
                      ++|+||.+.
T Consensus       425 ~~~~dG~l~  433 (549)
T 3g7s_A          425 FIDEEGFLH  433 (549)
T ss_dssp             EECTTSCEE
T ss_pred             EEcCCceEE
Confidence            999999764

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*

Probab=100.00  E-value=5.7e-62  Score=508.74  Aligned_cols=416  Identities=21%  Similarity=0.283  Sum_probs=337.9

Q ss_pred             CCCCccccccccCCCCCCCCCCCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCC
Q 010455           21 SGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVN  100 (510)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~  100 (510)
                      .+..+|++..+...++.    ..++.++|.++++++|+++|+++.   ++.    +.+||+||.++++++|++|++.|++
T Consensus         4 ~~~~i~~~~~~~~~~p~----~~~l~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~   72 (536)
T 3ni2_A            4 QEEFIFRSKLPDIYIPK----NLPLHSYVLENLSNHSSKPCLING---ANG----DVYTYADVELTARRVASGLNKIGIQ   72 (536)
T ss_dssp             -CCCCBCCSSCCCCCCS----SCCHHHHHTTTGGGSTTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHTTCC
T ss_pred             ccceEEecCCCCCCCCC----CCcHHHHHHHHhhcCCCceEEEEC---CCC----CEEEHHHHHHHHHHHHHHHHHcCCC
Confidence            44556666665433332    478999999999999999999864   322    5799999999999999999999999


Q ss_pred             CCCEEEEEcCCchhHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEe
Q 010455          101 PGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSF  180 (510)
Q Consensus       101 ~gd~Vai~~~ns~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~  180 (510)
                      +||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++|++......+.+.....  .. .++.+
T Consensus        73 ~gd~V~i~~~~~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~--~~-~~~~~  149 (536)
T 3ni2_A           73 QGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARES--DV-KVMCV  149 (536)
T ss_dssp             TTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHH--TC-EEEES
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhc--Cc-eEEEe
Confidence            9999999999999999999999999999999999999999999999999999999988776655433221  11 33444


Q ss_pred             cCCChhhhhHhhhcCceeeeHHHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhcc
Q 010455          181 ANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTG  260 (510)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~  260 (510)
                      +....           ....++++..............++++++|+|||||||.||||+++|+++++.+......... .
T Consensus       150 ~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~-~  217 (536)
T 3ni2_A          150 DSAPD-----------GCLHFSELTQADENEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNP-N  217 (536)
T ss_dssp             SCCCT-----------TCEETHHHHTSCGGGCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSC-S
T ss_pred             cCCCC-----------CccCHHHHhhccccccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccc-c
Confidence            33211           23456666554433333445678999999999999999999999999999887664432100 1


Q ss_pred             ccCCCCcEEEEecChHHHHHHHH-HHHHHhcCcEEEEeCC-CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccC
Q 010455          261 KVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGG  338 (510)
Q Consensus       261 ~~~~~~d~~~~~~pl~h~~g~~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~  338 (510)
                      ..+...|++++.+|++|.+++.. ++.++..|+++++.+. ++..+++.++++++|++.++|+++..+++          
T Consensus       218 ~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~----------  287 (536)
T 3ni2_A          218 LYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAK----------  287 (536)
T ss_dssp             SCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHT----------
T ss_pred             ccCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHh----------
Confidence            25788999999999999999865 7789999999999875 99999999999999999999999999864          


Q ss_pred             hhHHHHHHHHHHhhhhhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhc-CCCeeeeccc
Q 010455          339 ALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGL  417 (510)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~-g~~l~~~yG~  417 (510)
                                                 .+..+..++        ++||.+++||+++++++.+++++.+ ++.+++.||+
T Consensus       288 ---------------------------~~~~~~~~l--------~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~  332 (536)
T 3ni2_A          288 ---------------------------SPDLDKHDL--------SSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGM  332 (536)
T ss_dssp             ---------------------------CSCGGGSCC--------TTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEEEC
T ss_pred             ---------------------------CcccccCCC--------ccceEEEECCCCCCHHHHHHHHHHCCCCCccccccc
Confidence                                       111222222        3899999999999999999999988 8999999999


Q ss_pred             cccccceeccc----CCCCccCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhh-cc
Q 010455          418 TESCSGCFTSL----ADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VD  492 (510)
Q Consensus       418 tE~~~~~~~~~----~~~~~~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~  492 (510)
                      ||++.+++...    ......++++|+|+++++++|+|.+++.+++.|  +.|||+|+|++++.|||++|+.+.+.| .+
T Consensus       333 TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g--~~GEl~v~g~~v~~GY~~~p~~t~~~~~~~  410 (536)
T 3ni2_A          333 TEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRN--QPGEICIRGDQIMKGYLNDPEATSRTIDKE  410 (536)
T ss_dssp             GGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBCCTT--CCEEEEEESTTSCSEETTCHHHHHHHBCTT
T ss_pred             cccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCCCCC--CccEEEEeCcccchhhcCChhHHHhhccCC
Confidence            99987655432    112334589999999999999995557777666  899999999999999999999999999 89


Q ss_pred             CccccCCe-eeccCCccC
Q 010455          493 GWFHTGKN-PWQYTFKKL  509 (510)
Q Consensus       493 gw~~TGDl-~~d~dG~~~  509 (510)
                      |||+|||+ ++|+||++.
T Consensus       411 g~~~TGDl~~~~~dG~l~  428 (536)
T 3ni2_A          411 GWLHTGDIGYIDDDDELF  428 (536)
T ss_dssp             SCEEEEEEEEECTTSCEE
T ss_pred             CceEcccEEEEcCCceEE
Confidence            99999999 999999864

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A

Probab=100.00  E-value=1.5e-61  Score=507.10  Aligned_cols=410  Identities=22%  Similarity=0.328  Sum_probs=331.1

Q ss_pred             CCCCCCCCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhH
Q 010455           36 LESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEW  115 (510)
Q Consensus        36 ~~~~~~~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~  115 (510)
                      +..+.+..|+.++|.++++++|+++|++...  ++..+  +.+||+||.++++++|++|++.|+++||+|+++++|++++
T Consensus        13 ~~~~~~~~tl~~~l~~~a~~~p~~~a~~a~~--~~~~~--~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~   88 (550)
T 3rix_A           13 PFYPLEDGTAGEQLHKAMKRYALVPGTIAFT--DAHIE--VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQF   88 (550)
T ss_dssp             CSSCCCCSCHHHHHHHHHHHHHTSTTCEEEE--ETTTC--CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTT
T ss_pred             CCCCcccCCHHHHHHHHHHhCCCCceEEEee--ecCCC--cEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccH
Confidence            3444567899999999999999999976220  21111  5899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcC
Q 010455          116 IIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELG  195 (510)
Q Consensus       116 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  195 (510)
                      ++++|||+++|++++|+++.++.+++.++++.++++++|++.+....+...... .+.+..++.++.....         
T Consensus        89 ~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---------  158 (550)
T 3rix_A           89 FMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKK-LPIIQKIIIMDSKTDY---------  158 (550)
T ss_dssp             HHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHH-CTTCCEEEETTCSSCB---------
T ss_pred             HHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhh-CCCcceEEEEcCCccc---------
Confidence            999999999999999999999999999999999999999999877766554332 2445666665543211         


Q ss_pred             ceeeeHHHHHHcCCC------C-CCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcE
Q 010455          196 VSCFSWEEFLQLGTL------D-CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDT  268 (510)
Q Consensus       196 ~~~~~~~~~~~~~~~------~-~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~  268 (510)
                      .....+.++......      . .+.....++++++|+|||||||.||+|+++|+++...+......+  ....+.++|+
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~--~~~~~~~~~~  236 (550)
T 3rix_A          159 QGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPI--FGNQIIPDTA  236 (550)
T ss_dssp             TTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTT--TSCCCCTTCE
T ss_pred             cCcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhh--ccccCCCCcE
Confidence            123455555543211      1 111222457899999999999999999999999998887755431  0126778999


Q ss_pred             EEEecChHHHHHHHHHHHHHhcCcEEEEeCC-CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHH
Q 010455          269 YFSFLPLAHIYDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEF  347 (510)
Q Consensus       269 ~~~~~pl~h~~g~~~~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~  347 (510)
                      +++.+|++|.+++...+.+++.|+++++.+. ++..+++.++++++|+++++|+++..+++.                  
T Consensus       237 ~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~------------------  298 (550)
T 3rix_A          237 ILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKS------------------  298 (550)
T ss_dssp             EEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHC------------------
T ss_pred             EEEechHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhC------------------
Confidence            9999999999999888889999999999875 999999999999999999999999998751                  


Q ss_pred             HHHhhhhhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCC-eeeeccccccccceec
Q 010455          348 AYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAP-LTQGYGLTESCSGCFT  426 (510)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~-l~~~yG~tE~~~~~~~  426 (510)
                                         ...+..++        ++||.+++||+++++++.+++.+.++.. +++.||+||++..++.
T Consensus       299 -------------------~~~~~~~l--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~  351 (550)
T 3rix_A          299 -------------------TLIDKYDL--------SNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILI  351 (550)
T ss_dssp             -------------------CGGGGSCC--------TTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEE
T ss_pred             -------------------ccccccCc--------ccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCccccceec
Confidence                               11222222        3899999999999999999999999875 9999999999987776


Q ss_pred             ccCCCCccCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhh-ccCccccCCe-eecc
Q 010455          427 SLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGKN-PWQY  504 (510)
Q Consensus       427 ~~~~~~~~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~gw~~TGDl-~~d~  504 (510)
                      ...... ..+++|+|+|+++++|+|.+++.+++.|  +.|||+|+|++++.|||++|+.+.+.| .+|||+|||+ ++|+
T Consensus       352 ~~~~~~-~~~~vG~~~~~~~~~i~d~~~~~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~  428 (550)
T 3rix_A          352 TPEGDD-KPGAVGKVVPFFEAKVVDLDTGKTLGVN--QRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDE  428 (550)
T ss_dssp             CCTTCC-CTTEEEEECTTCEEEEECTTTCCBCCTT--CCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECT
T ss_pred             CCCCCC-CCCCcccccCCcEEEEEeCCCCcCCCCC--CCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEeC
Confidence            655443 3489999999999999995556666665  899999999999999999999999999 8999999999 9999


Q ss_pred             CCccC
Q 010455          505 TFKKL  509 (510)
Q Consensus       505 dG~~~  509 (510)
                      ||++.
T Consensus       429 dG~l~  433 (550)
T 3rix_A          429 DEHFF  433 (550)
T ss_dssp             TCCEE
T ss_pred             CceEE
Confidence            99864

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*

Probab=100.00  E-value=7.8e-61  Score=500.52  Aligned_cols=397  Identities=23%  Similarity=0.311  Sum_probs=329.1

Q ss_pred             CCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHH
Q 010455           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (510)
Q Consensus        42 ~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA  121 (510)
                      +.++.++|+++++++|+++|+++.   ++  +..+.+||+||.++++++|++|++.|+++||+|+++++|++++++++||
T Consensus        17 ~~~l~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA   91 (541)
T 1v25_A           17 ELNLWDFLERAAALFGRKEVVSRL---HT--GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFA   91 (541)
T ss_dssp             CCCTHHHHHHHHHHSTTCEEEEEC---TT--SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhCCCceEEEEe---cC--CCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence            468999999999999999999864   22  2237899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCceeeeH
Q 010455          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW  201 (510)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  201 (510)
                      |+++|++++|+++.++.+++.++++.++++++|++.+....+...... .+.++.++.+++...          .....+
T Consensus        92 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----------~~~~~~  160 (541)
T 1v25_A           92 VPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGE-LKTVQHFVVMDEKAP----------EGYLAY  160 (541)
T ss_dssp             HHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGG-CSSCCEEEESSSCCC----------TTCEEH
T ss_pred             HHhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhh-CCCccEEEEecCCCC----------cccccH
Confidence            999999999999999999999999999999999998876655443322 244555666544321          012345


Q ss_pred             HHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhh--hhhhhhccccCCCCcEEEEecChHHHH
Q 010455          202 EEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSV--DQMFVVTGKVCSEEDTYFSFLPLAHIY  279 (510)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~--~~~~~~~~~~~~~~d~~~~~~pl~h~~  279 (510)
                      ++++.....   .....++++++|+|||||||.||||++||+++++.....  ...+     .+.++|++++.+|++|.+
T Consensus       161 ~~~~~~~~~---~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~h~~  232 (541)
T 1v25_A          161 EEALGEEAD---PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGT-----ALSEKDVVLPVVPMFHVN  232 (541)
T ss_dssp             HHHCCSCCC---CCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTT-----CCCTTCEEEECSCTTSHH
T ss_pred             HHHhhccCC---cccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccc-----cCCCCCEEEEeccchhhh
Confidence            555433211   134467899999999999999999999999998776652  2333     678999999999999999


Q ss_pred             HHHHHHHHHhcCcEEEEeCC--CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhcc
Q 010455          280 DQIIETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMK  357 (510)
Q Consensus       280 g~~~~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (510)
                      ++...+.+++.|+++++.+.  ++..+++.++++++|+++++|+++..+++.......                      
T Consensus       233 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~----------------------  290 (541)
T 1v25_A          233 AWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGH----------------------  290 (541)
T ss_dssp             HHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTC----------------------
T ss_pred             HHHHHHHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCC----------------------
Confidence            98777889999999999863  999999999999999999999999998764322100                      


Q ss_pred             cCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeeccccccccceecccCCC------
Q 010455          358 KGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADV------  431 (510)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~~~~~~~~~------  431 (510)
                                     ++        ++||.+++||+++++++.+++ +.+|+++++.||+||++.+++......      
T Consensus       291 ---------------~l--------~~lr~i~~gG~~l~~~~~~~~-~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~  346 (541)
T 1v25_A          291 ---------------RL--------KTLRRLVVGGSAAPRSLIARF-ERMGVEVRQGYGLTETSPVVVQNFVKSHLESLS  346 (541)
T ss_dssp             ---------------CC--------SSCCEEEECSSCCCHHHHHHH-HHTTCEEEEEEECGGGSSEEEECCCCGGGTTSC
T ss_pred             ---------------cc--------hhccEEEECCCCCCHHHHHHH-HHhCCceeecccccccccceecccccccccccC
Confidence                           11        389999999999999999999 557999999999999988776553321      


Q ss_pred             ----CccCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhh-ccCccccCCe-eeccC
Q 010455          432 ----FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGKN-PWQYT  505 (510)
Q Consensus       432 ----~~~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~gw~~TGDl-~~d~d  505 (510)
                          ....+++|+|+|+++++|+| +++++++.+.++.|||+|+||+++.|||++|+.+.+.| .+|||+|||+ ++|+|
T Consensus       347 ~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~~~~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDlg~~d~d  425 (541)
T 1v25_A          347 EEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEE  425 (541)
T ss_dssp             HHHHHHHHTSCBEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECTT
T ss_pred             ccccccccCCCCCcCCCcEEEEEC-CCCCCCCCCCCcceEEEEeCcchhccccCChhhhhhhccCCCCeEcCCEEEEcCC
Confidence                02247899999999999999 88888876545789999999999999999999999999 5999999999 99999


Q ss_pred             CccC
Q 010455          506 FKKL  509 (510)
Q Consensus       506 G~~~  509 (510)
                      |++.
T Consensus       426 G~l~  429 (541)
T 1v25_A          426 GYVE  429 (541)
T ss_dssp             CCEE
T ss_pred             ceEE
Confidence            9764

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*

Probab=100.00  E-value=5.2e-61  Score=502.17  Aligned_cols=394  Identities=14%  Similarity=0.168  Sum_probs=329.2

Q ss_pred             CCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHH
Q 010455           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (510)
Q Consensus        42 ~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA  121 (510)
                      ..++.++|+++++++|+++|+++.   +      +++||+||.++++++|++|++.|+++||+|+++++|++++++++||
T Consensus        29 ~~tl~~~l~~~a~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA   99 (544)
T 3o83_A           29 DQPLTRILTVGVQSHPHSLAIICG---E------RQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFA   99 (544)
T ss_dssp             CCCTTHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhCCCceEEEcC---C------CceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHH
Confidence            578999999999999999999865   3      6899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChh----hHhhcCccCCCCccEEEEecCCChhhhhHhhhcCce
Q 010455          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP----SILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS  197 (510)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  197 (510)
                      |+++|++++|+++.++.+++.++++.++++++|++.....    ...+...........++..+....            
T Consensus       100 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  167 (544)
T 3o83_A          100 LLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQAT------------  167 (544)
T ss_dssp             HHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCTT------------
T ss_pred             HHHhCcEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCCcc------------
Confidence            9999999999999999999999999999999999987541    111222222244455555544321            


Q ss_pred             eeeHHHHHHcCC-CCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChH
Q 010455          198 CFSWEEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLA  276 (510)
Q Consensus       198 ~~~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~  276 (510)
                      ...+.++..... .........++++++|+|||||||.||||+++|+++.+.+......+     ++.++|++++.+|++
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~  242 (544)
T 3o83_A          168 DFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEIC-----GLNSNTRLLCALPAP  242 (544)
T ss_dssp             SEEHHHHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTT
T ss_pred             ccchhhhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHh-----CCCCCCeEEEecCcc
Confidence            123444444332 12222455689999999999999999999999999999999988877     889999999999999


Q ss_pred             HHHHHHH--HHHHHhcCcEEEEeCC-CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhh
Q 010455          277 HIYDQII--ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKL  353 (510)
Q Consensus       277 h~~g~~~--~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (510)
                      |.+++..  ++.++..|+++++.+. ++..+++.++++++|++.++|+++..+++...                      
T Consensus       243 h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~----------------------  300 (544)
T 3o83_A          243 HNFMLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAA----------------------  300 (544)
T ss_dssp             SHHHHHSSHHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHT----------------------
T ss_pred             eEeecchHHHHHHHHcCCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchh----------------------
Confidence            9999873  7789999999999875 99999999999999999999999999876321                      


Q ss_pred             hhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeeccccccccceecccCCCCc
Q 010455          354 GNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFN  433 (510)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~~~~~~~~~~~  433 (510)
                                     ....+++        +||.+++||+++++++.+++.+.+|+.+++.||+||++..++........
T Consensus       301 ---------------~~~~~~~--------~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~  357 (544)
T 3o83_A          301 ---------------QYKDQIQ--------SLKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTRLDDSDEQ  357 (544)
T ss_dssp             ---------------TTHHHHT--------TCCEEEEESSCCCHHHHTHHHHHHCSEEEEEEECTTSCEEECCTTSCHHH
T ss_pred             ---------------hccccCC--------cceEEEEcCCCCCHHHHHHHHHHhCCcEEeeeccccccceeecCCCchhh
Confidence                           1222333        89999999999999999999999999999999999987654433322233


Q ss_pred             cCCcccccc-CCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhh-ccCccccCCe-eeccCCccC
Q 010455          434 MIGTVGVPM-TTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGKN-PWQYTFKKL  509 (510)
Q Consensus       434 ~~~svG~p~-~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~gw~~TGDl-~~d~dG~~~  509 (510)
                      ..+++|+|+ ++++++|+| +++++++.|  +.|||+|+||+++.||+++|+.+.+.| .+|||+|||+ ++|+||.+.
T Consensus       358 ~~~~~G~p~~~~~~~~i~d-~~~~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~  433 (544)
T 3o83_A          358 IFTTQGRPISSDDEIKIVD-EQYREVPEG--EIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLR  433 (544)
T ss_dssp             HHHCCCEESCTTCEEEEEC-TTSCBCCTT--CCEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECTTSCEE
T ss_pred             ccCCCceecCCCcEEEEEC-CCCCCCCCC--CeeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEcCCCCEE
Confidence            347899996 899999999 898888777  899999999999999999999999999 8999999999 999999864

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}

Probab=100.00  E-value=1.9e-60  Score=500.58  Aligned_cols=400  Identities=17%  Similarity=0.171  Sum_probs=331.1

Q ss_pred             CCCCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHH
Q 010455           40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM  119 (510)
Q Consensus        40 ~~~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~  119 (510)
                      ...+.+.++|+++|+++|+++|+++.   ++ .+..+.+||+||.++++++|.+|++.|+++||+|+++++|++++++++
T Consensus        53 ~~~n~~~~~l~~~a~~~pd~~Al~~~---~~-~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~~  128 (580)
T 3etc_A           53 ENFNFAYDVVDVYARDSPEKLAMIWC---DD-YGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCM  128 (580)
T ss_dssp             SSCCHHHHTHHHHHHHCTTCEEEEEE---ES-SSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHHH
T ss_pred             ccchHHHHHHHHHHhhCCCCEEEEEE---cC-CCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence            44566679999999999999999986   43 234478999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCCh--hhHhhcCccCCCCc-cEEEEecCCChhhhhHhhhcCc
Q 010455          120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI--PSILSCLPRCCLYL-KTIVSFANVSSSQKKEAEELGV  196 (510)
Q Consensus       120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~--~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~  196 (510)
                      |||+++|++++|+++.++.+++.++++.++++++|++.+..  ..+.+..... +.+ ..++.++...          ..
T Consensus       129 lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~----------~~  197 (580)
T 3etc_A          129 LGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAEC-GDIPLKKAKVGGDV----------LE  197 (580)
T ss_dssp             HHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHH-CSCCCEEEEESSSC----------CT
T ss_pred             HHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhC-CCcceEEEEeCCcc----------cc
Confidence            99999999999999999999999999999999999988764  4443332222 222 3444544321          11


Q ss_pred             eeeeHHHHHHcCCCCCC-C---CCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEe
Q 010455          197 SCFSWEEFLQLGTLDCE-L---PPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSF  272 (510)
Q Consensus       197 ~~~~~~~~~~~~~~~~~-~---~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~  272 (510)
                      .+..+.+.+........ .   ....++++++|+|||||||.||+|.++|.+++..+......+     .+.+++++++.
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~  272 (580)
T 3etc_A          198 GWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQ-----NVEDDGLHYTV  272 (580)
T ss_dssp             TCEEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTS-----CCCTTCEEEEC
T ss_pred             ccccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhh-----CCCCCceEEEe
Confidence            25567766654422111 1   245789999999999999999999999999988877655444     78899999999


Q ss_pred             cChHHHHHHHH-HHHHHhcCcEEEEeC---CCHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHH
Q 010455          273 LPLAHIYDQII-ETHCIHKGCSIGFWR---GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFA  348 (510)
Q Consensus       273 ~pl~h~~g~~~-~l~~l~~G~~~v~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~  348 (510)
                      .|+.|..+... ++.++..|+++++.+   +++..+++.++++++|+++++|++++.+++.                   
T Consensus       273 ~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~-------------------  333 (580)
T 3etc_A          273 ADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKE-------------------  333 (580)
T ss_dssp             CCTTSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTS-------------------
T ss_pred             CChHHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhc-------------------
Confidence            99999888774 778999999998873   3899999999999999999999999988641                   


Q ss_pred             HHhhhhhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeeccccccccceeccc
Q 010455          349 YNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSL  428 (510)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~~~~~~  428 (510)
                                         .....++        ++||.+++||+++++++.+++.+.+|+++++.||+||++..++...
T Consensus       334 -------------------~~~~~~l--------~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~  386 (580)
T 3etc_A          334 -------------------DLSHYNF--------STLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIATFP  386 (580)
T ss_dssp             -------------------CC---CC--------TTCCEEEECSSCCCHHHHHHHHHHHSCCCEEEECCTTSSCCEECCT
T ss_pred             -------------------ccccCCC--------ccceEEEEccCCCCHHHHHHHHHHhCCeEecccccccccceeecCC
Confidence                               1112222        3899999999999999999999989999999999999987666544


Q ss_pred             CCCCccCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEec-----CCccccccCCchhhhhhhccCccccCCe-ee
Q 010455          429 ADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRG-----NTLFSGYYKRPDLTEEVIVDGWFHTGKN-PW  502 (510)
Q Consensus       429 ~~~~~~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g-----~~v~~gY~~~~~~~~~~~~~gw~~TGDl-~~  502 (510)
                      .. ...++++|+|+||++++|+| ++|++++.|  +.|||+|+|     ++++.||+++|+.+.+.|.+|||+|||+ ++
T Consensus       387 ~~-~~~~~~~G~p~~~~~v~ivd-~~g~~~~~g--~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~~gwy~TGDlg~~  462 (580)
T 3etc_A          387 WM-EPKPGSIGKPTPGYKIELMD-RDGRLCEVG--EEGEIVINTMEGKPVGLFVHYGKDPERTEETWHDGYYHTGDMAWM  462 (580)
T ss_dssp             TS-CCCTTCCBEECTTCEEEEEC-TTSCBCCTT--CCEEEEEECTTCCCTTCCCEETTCHHHHHHHEETTEEEEEEEEEE
T ss_pred             CC-CCCCCccccCCCCCEEEEEC-CCCCCCCCC--CceEEEEecCCCCCCeeeccccCCHhHHHhhcCCCEEecCcEEEE
Confidence            33 33458999999999999999 888888777  899999997     7899999999999999999999999999 99


Q ss_pred             ccCCccC
Q 010455          503 QYTFKKL  509 (510)
Q Consensus       503 d~dG~~~  509 (510)
                      |+||++.
T Consensus       463 d~dG~l~  469 (580)
T 3etc_A          463 DEDGYLW  469 (580)
T ss_dssp             CTTSCEE
T ss_pred             CCCCcEE
Confidence            9999864

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A

Probab=100.00  E-value=5.4e-61  Score=501.47  Aligned_cols=391  Identities=18%  Similarity=0.184  Sum_probs=320.6

Q ss_pred             CCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHH
Q 010455           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (510)
Q Consensus        42 ~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA  121 (510)
                      ..++.++|+++++++|+++|+++.   +      +++||+||.++++++|++|++.|+++||+|+++++|++++++++||
T Consensus        24 ~~tl~~~l~~~a~~~p~~~A~~~~---~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA   94 (539)
T 1mdb_A           24 GETFGDLLRDRAAKYGDRIAITCG---N------THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFA   94 (539)
T ss_dssp             SCCHHHHHHHHHHHHTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHCCCCEEEEeC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence            478999999999999999999864   3      6899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChh----hHhhcCccCCCCccEEEEecCCChhhhhHhhhcCce
Q 010455          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP----SILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS  197 (510)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  197 (510)
                      |+++|++++|++|.++.+++.++++.++++++|++++...    ..........+.++.++..++...            
T Consensus        95 ~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  162 (539)
T 1mdb_A           95 LFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEE------------  162 (539)
T ss_dssp             HHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCTT------------
T ss_pred             HHHcCeEEecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCccc------------
Confidence            9999999999999999999999999999999999875321    111111111233444444433210            


Q ss_pred             eeeHHHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHH
Q 010455          198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAH  277 (510)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h  277 (510)
                         +.++..............++++++++|||||||.||||+++|+++.+.+......+     ++..+|++++.+|++|
T Consensus       163 ---~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~h  234 (539)
T 1mdb_A          163 ---FLPLEDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-----WLDHSTVYLAALPMAH  234 (539)
T ss_dssp             ---SEEGGGCCCCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECSCTTS
T ss_pred             ---hhhhhhccccccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhh-----CCCCCCEEEEeecccc
Confidence               11111111111122345678999999999999999999999999999998887777     7889999999999999


Q ss_pred             HHHHH--HHHHHHhcCcEEEEeCC-CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhh
Q 010455          278 IYDQI--IETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLG  354 (510)
Q Consensus       278 ~~g~~--~~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (510)
                      .+++.  .++.+++.|+++++.+. ++..+++.++++++|+++++|+++..+++.....                     
T Consensus       235 ~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~---------------------  293 (539)
T 1mdb_A          235 NYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSR---------------------  293 (539)
T ss_dssp             HHHHHSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHC---------------------
T ss_pred             cchhhHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCcccc---------------------
Confidence            99987  47889999999999875 9999999999999999999999999987633211                     


Q ss_pred             hcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeeccccccccceecccCCCCcc
Q 010455          355 NMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNM  434 (510)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~~~~~~~~~~~~  434 (510)
                                      ..++        ++||.+++||+++++++.+++.+.+|+.+++.||+||++..++.........
T Consensus       294 ----------------~~~l--------~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~  349 (539)
T 1mdb_A          294 ----------------RDDL--------SSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEII  349 (539)
T ss_dssp             ----------------CCCC--------TTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCTTSCHHHH
T ss_pred             ----------------CCCc--------cceeEEEEcCCCCCHHHHHHHHHHhCCcEEEEEcCCCCcccccCCCCcHHhc
Confidence                            0011        3899999999999999999999988999999999999654333211111223


Q ss_pred             CCccccccCC-eEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhh-ccCccccCCe-eeccCCccC
Q 010455          435 IGTVGVPMTT-VEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGKN-PWQYTFKKL  509 (510)
Q Consensus       435 ~~svG~p~~g-~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~gw~~TGDl-~~d~dG~~~  509 (510)
                      .+++|+|+++ .+++|+| +++++++.|  +.|||+|+||+++.|||++|+.+.+.| .+|||+|||+ ++|+||++.
T Consensus       350 ~~~~G~p~~~~~~~~i~d-~~~~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~  424 (539)
T 1mdb_A          350 VNTQGKPMSPYDESRVWD-DHDRDVKPG--ETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIV  424 (539)
T ss_dssp             HHCCCEESSTTCEEEEEC-TTSCBCCTT--CCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEE
T ss_pred             CCCCCcccCCCceEEEEC-CCCCCCcCC--CcceEEeeCcccchhhcCChhhhhhhccCCCCeecCceEEECCCCcEE
Confidence            4789999976 5899999 888888776  899999999999999999999999999 7999999999 999999764

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A

Probab=100.00  E-value=1.2e-60  Score=496.38  Aligned_cols=391  Identities=21%  Similarity=0.279  Sum_probs=324.4

Q ss_pred             CCCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHH
Q 010455           41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME  120 (510)
Q Consensus        41 ~~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~l  120 (510)
                      ...++.++|+++++++|+++|+++.   +..    +.+||+||.++++++|++|++.|+++||+|+++++|++++++++|
T Consensus        14 ~~~~l~~~l~~~a~~~p~~~A~~~~---~~~----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~l   86 (517)
T 3r44_A           14 KMKNIGWMLRQRATVSPRLQAYVEP---STD----VRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFY   86 (517)
T ss_dssp             GGGCHHHHHHHHHHHSTTSEEEEEG---GGT----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred             cccCHHHHHHHHHHhCCCCeEEEeC---CcC----ceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHHH
Confidence            3579999999999999999999875   322    589999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCceeee
Q 010455          121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFS  200 (510)
Q Consensus       121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  200 (510)
                      ||+++|++++|+++.++.+++.++++.++++++|++......+....... .....++.+..               ...
T Consensus        87 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~---------------~~~  150 (517)
T 3r44_A           87 GAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQA-DPPGTVTDWIG---------------ADS  150 (517)
T ss_dssp             HHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSS-SCCTTCCEEEE---------------HHH
T ss_pred             HHHHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhcc-CCccEEEEccC---------------ccc
Confidence            99999999999999999999999999999999999987766554332211 11111111110               012


Q ss_pred             HHHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHH
Q 010455          201 WEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD  280 (510)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g  280 (510)
                      +.+...............++++++|+|||||||.||||+++|+++.+.+......+     ++..+|++++.+|++|..+
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~  225 (517)
T 3r44_A          151 LAERLRSAAADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTI-----DVRYRDRLLLPLPMFHVAA  225 (517)
T ss_dssp             HHHHHHHCCCCCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHS-----CCCTTCEEEECSCTTSHHH
T ss_pred             HHHHhhccCcCCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhc-----CCCCCCEEEEeCchHHHHH
Confidence            33444333333334456789999999999999999999999999999999988877     8899999999999999999


Q ss_pred             HHHHHHHHhcCcEEEEeCC-CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhcccC
Q 010455          281 QIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKG  359 (510)
Q Consensus       281 ~~~~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (510)
                      +...+.+++.|+++++.+. ++..+++.++++++|++.++|+++..+.+..                             
T Consensus       226 ~~~~~~~~~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-----------------------------  276 (517)
T 3r44_A          226 LTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVP-----------------------------  276 (517)
T ss_dssp             HHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSH-----------------------------
T ss_pred             HHHHHHHHhcCeEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCc-----------------------------
Confidence            9876666669999998875 9999999999999999999999999987521                             


Q ss_pred             CCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeeccccccccceecccCCC-CccCCcc
Q 010455          360 MPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADV-FNMIGTV  438 (510)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~~~~~~~~~-~~~~~sv  438 (510)
                              .....++        ++||.+++||+++++++.+++.+. ++.+++.||+||++..++...... ....+++
T Consensus       277 --------~~~~~~~--------~~lr~i~~gGe~l~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~  339 (517)
T 3r44_A          277 --------EFAELDA--------PDFRYFITGGAPMPEALIKIYAAK-NIEVVQGYALTESCGGGTLLLSEDALRKAGSA  339 (517)
T ss_dssp             --------HHHHCCC--------TTCCEEEECSSCCCHHHHHHHHHT-TCEEEEEEECGGGTTCEEEECGGGTTTTTTCC
T ss_pred             --------ccccCCC--------CcccEEEECCCCCCHHHHHHHHhc-CCcEEEeecccccccceeecCCccccccCCCC
Confidence                    1112222        389999999999999999999887 999999999999988766544332 3445899


Q ss_pred             ccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhhccCccccCCe-eeccCCccC
Q 010455          439 GVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGKN-PWQYTFKKL  509 (510)
Q Consensus       439 G~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDl-~~d~dG~~~  509 (510)
                      |+|+++++++|+| +++..++.|   .|||+|+|++++.|||++|+.+.+.|.+|||+|||+ ++|+||.+.
T Consensus       340 G~~~~~~~~~i~d-~~~~~~~~g---~GEl~v~g~~v~~GY~~~p~~t~~~f~~g~~~TGDl~~~~~dG~l~  407 (517)
T 3r44_A          340 GRATMFTDVAVRG-DDGVIREHG---EGEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDDEGYLY  407 (517)
T ss_dssp             BEECTTEEEEEEC-TTSCEESSE---EEEEEEEETTSCSEETTCHHHHHHTEETTEEEEEEEEEECTTSCEE
T ss_pred             CcCCCCeEEEEEC-CCCCCCCCC---CeEEEEeCcchhhhhCCChhhhHhhhcCCCEecceeEEEcCCeeEE
Confidence            9999999999999 888776654   799999999999999999999999999999999999 999999864

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*

Probab=100.00  E-value=5.2e-60  Score=496.58  Aligned_cols=398  Identities=17%  Similarity=0.223  Sum_probs=330.0

Q ss_pred             CCCCCHHHHHHHHHhh-----CCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhC-CCCCCCEEEEEcCCch
Q 010455           40 AGLESPWQFFCDSAKR-----IPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSR-GVNPGDRCGIYGSNCP  113 (510)
Q Consensus        40 ~~~~sl~~~l~~~a~~-----~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~-gv~~gd~Vai~~~ns~  113 (510)
                      ...+++.++|++++++     +|+++|+++.   ++ .+..+.+||+||.++++++|++|++. |+++||+|+++++|++
T Consensus        35 ~~~~~~~~~l~~~a~~~~a~~~p~~~al~~~---~~-~g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~  110 (570)
T 3c5e_A           35 AKFNFASDVLDHWADMEKAGKRPPSPALWWV---NG-KGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVP  110 (570)
T ss_dssp             SBCCHHHHTHHHHHHHHHTTSSCCCEEEEEE---CS-SSCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCH
T ss_pred             ccccHHHHHHHHHHhhccccCCCCceEEEEE---cC-CCceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCH
Confidence            3456778999999999     9999999876   42 22247899999999999999999999 9999999999999999


Q ss_pred             hHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhh
Q 010455          114 EWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEE  193 (510)
Q Consensus       114 ~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  193 (510)
                      ++++++|||+++|++++|+++.++.+++.++++.++++++|++++....+.+.... .+.++.++.+++...        
T Consensus       111 e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--------  181 (570)
T 3c5e_A          111 EWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASE-CPSLRIKLLVSEKSC--------  181 (570)
T ss_dssp             HHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGG-CTTCCEEEEESSSCC--------
T ss_pred             HHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhc-CCceeEEEEecccCc--------
Confidence            99999999999999999999999999999999999999999999887766543332 244555666554211        


Q ss_pred             cCceeeeHHHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHH--HHhhhhhhhhhccccCCCCcEEEE
Q 010455          194 LGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVA--EVLSVDQMFVVTGKVCSEEDTYFS  271 (510)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~--~~~~~~~~~~~~~~~~~~~d~~~~  271 (510)
                        ..+..+++++.............++++++|+|||||||.||||+++|+ ++.  ..... ..+     ++..+|++++
T Consensus       182 --~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~-----~~~~~d~~~~  252 (570)
T 3c5e_A          182 --DGWLNFKKLLNEASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWT-----GLQASDIMWT  252 (570)
T ss_dssp             --TTSEEHHHHHHHSCSCCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTT-----SCCTTCEEEE
T ss_pred             --cccccHHHHhhcccccccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhc-----CCCCCceEEE
Confidence              013456666654432222344568999999999999999999999999 554  33333 444     7889999999


Q ss_pred             ecChHHHHHHH-HHHHHHhcCcEEEEeC---CCHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHH
Q 010455          272 FLPLAHIYDQI-IETHCIHKGCSIGFWR---GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEF  347 (510)
Q Consensus       272 ~~pl~h~~g~~-~~l~~l~~G~~~v~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~  347 (510)
                      .+|++|..++. .++.++..|+++++.+   .++..+++.++++++|+++++|+++..+++.                  
T Consensus       253 ~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~------------------  314 (570)
T 3c5e_A          253 ISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQ------------------  314 (570)
T ss_dssp             CCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTS------------------
T ss_pred             cCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhc------------------
Confidence            99999999987 4788999999999985   3999999999999999999999999998641                  


Q ss_pred             HHHhhhhhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeeccccccccceecc
Q 010455          348 AYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTS  427 (510)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~~~~~  427 (510)
                                         . .+..++        ++||.+++||+++++++.+++.+.+|+.+++.||+||++.+++..
T Consensus       315 -------------------~-~~~~~~--------~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~  366 (570)
T 3c5e_A          315 -------------------D-LSSYKF--------PHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMVS  366 (570)
T ss_dssp             -------------------C-TTTCCC--------TTCCEEEEESSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECC
T ss_pred             -------------------c-cccccc--------ccceEEEEcCCcCCHHHHHHHHHHhCCchhhccchhhcccceecC
Confidence                               0 001111        389999999999999999999998899999999999998766554


Q ss_pred             cCCCCccCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEe-----cCCccccccCCchhhhhhhccCccccCCe-e
Q 010455          428 LADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLR-----GNTLFSGYYKRPDLTEEVIVDGWFHTGKN-P  501 (510)
Q Consensus       428 ~~~~~~~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~-----g~~v~~gY~~~~~~~~~~~~~gw~~TGDl-~  501 (510)
                      ... ....+++|+|+++++++|+| +++++++.|  +.|||+|+     |++++.||+++|+.+.+.|.+|||+|||+ +
T Consensus       367 ~~~-~~~~~~vG~p~~~~~v~i~d-~~g~~~~~G--~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f~~~~~~TGDlg~  442 (570)
T 3c5e_A          367 KTM-KIKPGYMGTAASCYDVQIID-DKGNVLPPG--TEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLLGDRGI  442 (570)
T ss_dssp             TTS-CCCTTCCCEECTTCCEEEEC-TTSCBCCTT--CCEEEEEECSSBCCTTCCCEETTCHHHHHHTEETTEEEEEEEEE
T ss_pred             ccc-ccCCCcccccCCCceEEEEC-CCCCCCCCC--CCCeeEEeccCCCCchhhccccCChhHhhhhhcCCccccceeEE
Confidence            332 23448999999999999999 888888776  89999999     99999999999999999999999999999 9


Q ss_pred             eccCCccC
Q 010455          502 WQYTFKKL  509 (510)
Q Consensus       502 ~d~dG~~~  509 (510)
                      +|+||++.
T Consensus       443 ~d~dG~l~  450 (570)
T 3c5e_A          443 KDEDGYFQ  450 (570)
T ss_dssp             ECTTSCEE
T ss_pred             EcCCceEE
Confidence            99999864

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A

Probab=100.00  E-value=9.9e-61  Score=493.52  Aligned_cols=397  Identities=16%  Similarity=0.185  Sum_probs=311.2

Q ss_pred             CCCCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHH
Q 010455           40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM  119 (510)
Q Consensus        40 ~~~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~  119 (510)
                      .+..++.++|+++++++||++|+++....++..+..+++||+||.++++++|++|++.|+ +||+|+++++|++++++++
T Consensus        21 ~~~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~   99 (480)
T 3t5a_A           21 MSVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAF   99 (480)
T ss_dssp             ---CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHH
T ss_pred             CCcccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHH
Confidence            346899999999999999999999872111233445789999999999999999999996 9999999999999999999


Q ss_pred             HHHHhcCCeEEEecC---CCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCC-CccEEEEecCCChhhhhHhhhcC
Q 010455          120 EACNSQAITYVPLYD---TLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCL-YLKTIVSFANVSSSQKKEAEELG  195 (510)
Q Consensus       120 lA~~~~G~~~v~l~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~  195 (510)
                      |||+++|++++||++   .++.+++.++++.++++++|++.+....+.+....... ....++.++...           
T Consensus       100 lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------  168 (480)
T 3t5a_A          100 LGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDLLD-----------  168 (480)
T ss_dssp             HHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGGGSC-----------
T ss_pred             HHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEecccc-----------
Confidence            999999999999999   77899999999999999999999888776654432211 111222222111           


Q ss_pred             ceeeeHHHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCC------CcEE
Q 010455          196 VSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSE------EDTY  269 (510)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~------~d~~  269 (510)
                                .............++++++|+|||||||.||||++||+++.+++......+     ....      +|++
T Consensus       169 ----------~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~~~~~~~d~~  233 (480)
T 3t5a_A          169 ----------LDAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGY-----FADTDGIPPPNSAL  233 (480)
T ss_dssp             ----------TTCC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHH-----CTTTTTCCCTTEEE
T ss_pred             ----------cccccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHh-----ccccccCCCCCCeE
Confidence                      011111223445678999999999999999999999999999998887777     5555      8999


Q ss_pred             EEecChHHHHHHHH-HHHHHhcCcEEEEeCC-----CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHH
Q 010455          270 FSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKK  343 (510)
Q Consensus       270 ~~~~pl~h~~g~~~-~l~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~  343 (510)
                      ++++|++|.+|+.. ++.+++.|+++++.+.     ++..+++.++++++| +..+|+++..++.....           
T Consensus       234 l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~-----------  301 (480)
T 3t5a_A          234 VSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTT-----------  301 (480)
T ss_dssp             EECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCC-----------
T ss_pred             EEeCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcC-----------
Confidence            99999999999764 7889999999999862     899999999999999 88999998887652210           


Q ss_pred             HHHHHHHhhhhhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcC------CCeeeeccc
Q 010455          344 LFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG------APLTQGYGL  417 (510)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g------~~l~~~yG~  417 (510)
                                            .+..+..++        ++||.+++||+++++++.+++.+.++      +.+++.||+
T Consensus       302 ----------------------~~~~~~~~l--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~  351 (480)
T 3t5a_A          302 ----------------------DDDMAGRDL--------GNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWL  351 (480)
T ss_dssp             ----------------------TGGGTTCCC--------TTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEE
T ss_pred             ----------------------cccccccch--------hhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhccccccc
Confidence                                  111112222        38999999999999999999999874      469999999


Q ss_pred             cccccceecccCCC------------------------CccCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecC
Q 010455          418 TESCSGCFTSLADV------------------------FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGN  473 (510)
Q Consensus       418 tE~~~~~~~~~~~~------------------------~~~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~  473 (510)
                      ||++.+++......                        ....+++|+|++ ++++|+|.+++++++.|  +.|||+|+||
T Consensus       352 TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~ivd~~~g~~~~~g--~~GEl~v~g~  428 (480)
T 3t5a_A          352 AEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIVDSDTCIECPDG--TVGEIWVHGD  428 (480)
T ss_dssp             TTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEEETTTTEECCTT--BCEEEEEEST
T ss_pred             cccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEEEEEcCCCCcCCCCC--CEEEEEEeCC
Confidence            99998777654332                        123368999999 99999993336777766  8999999999


Q ss_pred             CccccccCCchhhhhhh------------ccCccccCCe-eeccCCccC
Q 010455          474 TLFSGYYKRPDLTEEVI------------VDGWFHTGKN-PWQYTFKKL  509 (510)
Q Consensus       474 ~v~~gY~~~~~~~~~~~------------~~gw~~TGDl-~~d~dG~~~  509 (510)
                      +++.||||+|+.|.++|            .+|||+|||+ ++| ||++.
T Consensus       429 ~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~  476 (480)
T 3t5a_A          429 NVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMF  476 (480)
T ss_dssp             TSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEE
T ss_pred             ccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEEE
Confidence            99999999999999998            3569999999 997 89764

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*

Probab=100.00  E-value=9.5e-60  Score=492.81  Aligned_cols=398  Identities=22%  Similarity=0.328  Sum_probs=322.7

Q ss_pred             CCHHH-HHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHH
Q 010455           43 ESPWQ-FFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (510)
Q Consensus        43 ~sl~~-~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA  121 (510)
                      .++.+ +|.++++++ +++|+++.   ++.    +.+||+||.++++++|++|++.|+++||+|+++++|++++++++||
T Consensus        25 ~~l~~~~l~~~~~~~-~~~A~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~la   96 (548)
T 2d1s_A           25 AGTQLRKYMERYAKL-GAIAFTNA---VTG----VDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIA   96 (548)
T ss_dssp             HHHHHHHHHHHHHHH-TCEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHH
T ss_pred             CcHHHHHHHhhhccc-CCceEEEc---CCC----CEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Confidence            58999 899999999 99999863   221    5799999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCceeeeH
Q 010455          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW  201 (510)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  201 (510)
                      |+++|++++|+++.++.+++.++++.++++++|++.+....+.+..... +....++.++.....         .....+
T Consensus        97 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---------~~~~~~  166 (548)
T 2d1s_A           97 GLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTV-TTIKTIVILDSKVDY---------RGYQCL  166 (548)
T ss_dssp             HHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHS-TTCCEEEETTCSSCB---------TTBCBH
T ss_pred             HHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCC-CCCCEEEEeCCcccc---------cccccH
Confidence            9999999999999999999999999999999999998776654432211 223445554432100         012345


Q ss_pred             HHHHHcCCCC-CCCCCC------CCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecC
Q 010455          202 EEFLQLGTLD-CELPPK------KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLP  274 (510)
Q Consensus       202 ~~~~~~~~~~-~~~~~~------~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p  274 (510)
                      +++....... ......      .++++++++|||||||.||+|++||+++.+.+......+.  ..++.++|++++.+|
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~--~~~~~~~d~~l~~~p  244 (548)
T 2d1s_A          167 DTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIY--GNQVSPGTAVLTVVP  244 (548)
T ss_dssp             HHHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTT--SCCCCTTCEEEECSC
T ss_pred             HHHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhh--ccCCCccceEEEecc
Confidence            6665443111 111111      2389999999999999999999999999998887665410  016788999999999


Q ss_pred             hHHHHHHHH-HHHHHhcCcEEEEeCC-CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhh
Q 010455          275 LAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYK  352 (510)
Q Consensus       275 l~h~~g~~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (510)
                      ++|.+++.. ++.++ .|+++++.+. ++..+++.++++++|+++++|+++..+++.                       
T Consensus       245 ~~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-----------------------  300 (548)
T 2d1s_A          245 FHHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKS-----------------------  300 (548)
T ss_dssp             TTSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHC-----------------------
T ss_pred             HHHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhC-----------------------
Confidence            999999876 55566 9999998774 999999999999999999999999998651                       


Q ss_pred             hhhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhc-CCCeeeeccccccccceecccCCC
Q 010455          353 LGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESCSGCFTSLADV  431 (510)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~-g~~l~~~yG~tE~~~~~~~~~~~~  431 (510)
                                    +..+..++        ++||.+++||+++++++.+++.+.+ ++.+++.||+||++.+++..... 
T Consensus       301 --------------~~~~~~~l--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~-  357 (548)
T 2d1s_A          301 --------------ELLNKYDL--------SNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEG-  357 (548)
T ss_dssp             --------------SCGGGSCC--------TTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTT-
T ss_pred             --------------cccccccc--------cceeEEEEcCccCCHHHHHHHHHHcCCCceeeccccccccceeeecCcc-
Confidence                          11111122        3899999999999999999999988 68899999999998877664333 


Q ss_pred             CccCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhh-ccCccccCCe-eeccCCccC
Q 010455          432 FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGKN-PWQYTFKKL  509 (510)
Q Consensus       432 ~~~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~gw~~TGDl-~~d~dG~~~  509 (510)
                      ....+++|+|+|+++++|+|.+++++++.|  +.|||+|+|++++.|||++|+.+.+.| .+|||+|||+ ++|+||++.
T Consensus       358 ~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~  435 (548)
T 2d1s_A          358 DDKPGASGKVVPLFKAKVIDLDTKKSLGPN--RRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFF  435 (548)
T ss_dssp             CCCTTCCBEECTTCEEEEECTTTCCBCCTT--CCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEE
T ss_pred             cCCCCCCCccCCCceEEEEeCCcCccCCCC--CCeEEEECCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcCCCeEE
Confidence            234489999999999999995567766665  899999999999999999999999999 7999999999 999999764

>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A

Probab=100.00  E-value=1.2e-59  Score=494.62  Aligned_cols=375  Identities=18%  Similarity=0.203  Sum_probs=312.6

Q ss_pred             CCCCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHH
Q 010455           40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM  119 (510)
Q Consensus        40 ~~~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~  119 (510)
                      ....++.++|+++++++|+++|+++.   +      +++||+||.++++++|++|++.|+++||+|+++++|++++++++
T Consensus        72 ~~~~~l~~~l~~~a~~~pd~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~  142 (570)
T 4gr5_A           72 PAGACVHELFEAQAARAPDAVALLHE---A------DELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVAL  142 (570)
T ss_dssp             CCSCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred             CccCCHHHHHHHHHHHCCCCeEEECC---C------CcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence            44679999999999999999999865   3      68999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCceee
Q 010455          120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCF  199 (510)
Q Consensus       120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  199 (510)
                      |||+++|++++|+++.++.+++.++++.++++++|++......+        .....++..+..                
T Consensus       143 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~--------~~~~~~~~~~~~----------------  198 (570)
T 4gr5_A          143 LAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRL--------TGTTTLYVEDEA----------------  198 (570)
T ss_dssp             HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSS--------CSSEEEECCC------------------
T ss_pred             HHHHHHCCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhcc--------cCCcceeeeccc----------------
Confidence            99999999999999999999999999999999999987654332        111122111110                


Q ss_pred             eHHHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHH
Q 010455          200 SWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIY  279 (510)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~  279 (510)
                           ..............++++++|+|||||||.||||+++|+++.+.... ...+     ++.++|++++.+|++|..
T Consensus       199 -----~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~-----~~~~~d~~l~~~p~~~~~  267 (570)
T 4gr5_A          199 -----ASDAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYA-----GFGPDEVFLQCSPVSWDA  267 (570)
T ss_dssp             ----------CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSS-----CCSTTCEEEECSCTTSST
T ss_pred             -----cccccccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhc-----CCCCCCEEEEecCccHHH
Confidence                 00001112223456899999999999999999999999999877665 2333     678999999999999877


Q ss_pred             HHHHHHHHHhcCcEEEEeCC---CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhc
Q 010455          280 DQIIETHCIHKGCSIGFWRG---DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNM  356 (510)
Q Consensus       280 g~~~~l~~l~~G~~~v~~~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (510)
                      +...++.+++.|+++++.+.   ++..+++.++++++|++.++|+++..+++....                        
T Consensus       268 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~------------------------  323 (570)
T 4gr5_A          268 FGLELFGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPE------------------------  323 (570)
T ss_dssp             HHHHHHHHHTTTCEEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGG------------------------
T ss_pred             HHHHHHHHHhcCCEEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhchh------------------------
Confidence            77778889999999999763   899999999999999999999999998752110                        


Q ss_pred             ccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhc-CCCeeeeccccccccceecccCCC---C
Q 010455          357 KKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESCSGCFTSLADV---F  432 (510)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~-g~~l~~~yG~tE~~~~~~~~~~~~---~  432 (510)
                                      ++        ++||.+++||++++.++.+.+.+.+ ++.+++.||+||++.+++......   .
T Consensus       324 ----------------~~--------~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~  379 (570)
T 4gr5_A          324 ----------------AF--------EGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDLS  379 (570)
T ss_dssp             ----------------GG--------TTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCGGGTT
T ss_pred             ----------------hC--------CCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeeeeeeecccccC
Confidence                            11        3899999999999999888888776 789999999999987766543322   2


Q ss_pred             ccCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhh-cc--------CccccCCe-ee
Q 010455          433 NMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VD--------GWFHTGKN-PW  502 (510)
Q Consensus       433 ~~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~--------gw~~TGDl-~~  502 (510)
                      ....++|+|+++++++|+| +++++++.|  +.|||+|+|++++.|||++|+.+.++| .+        |||+|||+ ++
T Consensus       380 ~~~~~iG~p~~~~~v~i~d-~~~~~~~~G--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~  456 (570)
T 4gr5_A          380 GTALPIGVPLAGKRAYVLD-DDLKPAANG--ALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARR  456 (570)
T ss_dssp             SSSCCCBEECTTEEEEEEC-TTSCBCCTT--CEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEE
T ss_pred             CCccccceeeCCCEEEEEC-CCCCCCCCC--CcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCCCeEEE
Confidence            2336799999999999999 888888776  999999999999999999999999998 43        79999999 99


Q ss_pred             ccCCccC
Q 010455          503 QYTFKKL  509 (510)
Q Consensus       503 d~dG~~~  509 (510)
                      |+||++.
T Consensus       457 d~dG~l~  463 (570)
T 4gr5_A          457 RADGVLE  463 (570)
T ss_dssp             CTTSCEE
T ss_pred             CCCCeEE
Confidence            9999864

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0

Probab=100.00  E-value=1.6e-59  Score=487.42  Aligned_cols=385  Identities=20%  Similarity=0.249  Sum_probs=321.3

Q ss_pred             CCCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHH
Q 010455           41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME  120 (510)
Q Consensus        41 ~~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~l  120 (510)
                      .+.|+.++|+++++++||++|+++.   +      +++||+||.++++++|.+|++.|+++||+|+++++|++++++++|
T Consensus         4 ~~~tl~~~l~~~a~~~pd~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~l   74 (509)
T 3ivr_A            4 HDFTLADVYRRNAALFPDRTAFMVD---G------VRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIG   74 (509)
T ss_dssp             TCCCHHHHHHHHHHHSTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHHCCCceEEEEC---C------cEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Confidence            4579999999999999999999865   3      689999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCceeee
Q 010455          121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFS  200 (510)
Q Consensus       121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  200 (510)
                      ||+++|++++|+++.++.+++.++++.++++++|++.+....+..... ....+..++.+++...              .
T Consensus        75 A~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--------------~  139 (509)
T 3ivr_A           75 AVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLP-SLGGVKKAYAIGDGSG--------------P  139 (509)
T ss_dssp             HHHHTTCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGG-GCSSCCEEEESSCCCS--------------S
T ss_pred             HHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhc-ccCCceEEEEcCCCCc--------------C
Confidence            999999999999999999999999999999999999988776444442 2345566666554211              1


Q ss_pred             HHHHHH-cCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHH
Q 010455          201 WEEFLQ-LGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIY  279 (510)
Q Consensus       201 ~~~~~~-~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~  279 (510)
                      +.++.. ............++++++|+|||||||.||+|+++|+++.+.+.+....+     ++.++|++++.+|++|.+
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~  214 (509)
T 3ivr_A          140 FAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAW-----RLTEADVNLGMLPLFHVT  214 (509)
T ss_dssp             CEEGGGTCCCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTTSHH
T ss_pred             hhhHhhccCCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhh-----CCCCCcEEEEeCCCcchh
Confidence            122222 11222233456789999999999999999999999999999999988877     889999999999999999


Q ss_pred             HHHHHHHH-HhcCcEEEEeCCCHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhccc
Q 010455          280 DQIIETHC-IHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKK  358 (510)
Q Consensus       280 g~~~~l~~-l~~G~~~v~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (510)
                      ++...+.+ +..|+++++...++..+++.++++++|+++++|+++..+++..                            
T Consensus       215 g~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~----------------------------  266 (509)
T 3ivr_A          215 GLGLMLTLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQA----------------------------  266 (509)
T ss_dssp             HHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHC----------------------------
T ss_pred             HHHHHHHHHHhCCcEEEecccCHHHHHHHHHHHCCcEEEecHHHHHHHHhcc----------------------------
Confidence            99876664 4455555555459999999999999999999999999987521                            


Q ss_pred             CCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhc-CCCeeeeccccccccceecccCCCCccCCc
Q 010455          359 GMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESCSGCFTSLADVFNMIGT  437 (510)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~-g~~l~~~yG~tE~~~~~~~~~~~~~~~~~s  437 (510)
                                 ...++        +++|.++.+|++   ++.+.+.+.+ ++.+++.||+||++.+++.......  ..+
T Consensus       267 -----------~~~~l--------~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~--~~~  322 (509)
T 3ivr_A          267 -----------APAQL--------ASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGLSTFAPYRDR--PKS  322 (509)
T ss_dssp             -----------CGGGG--------TTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGGGTEEEEEEEGGGS--TTS
T ss_pred             -----------cccch--------hhhheecccCCh---HHHHHHHHhcCCCeEEcccCccccccccccCccccC--CCc
Confidence                       00111        289999999988   7788888887 8999999999999987766544322  256


Q ss_pred             cccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhhccCccccCCe-eeccCCccC
Q 010455          438 VGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGKN-PWQYTFKKL  509 (510)
Q Consensus       438 vG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDl-~~d~dG~~~  509 (510)
                      +|+|+++++++|+| +++++++.|  +.|||+|+|++++.||+++|+.+.+.|.+|||+|||+ ++|+||++.
T Consensus       323 ~G~p~~~~~~~i~d-~~~~~~~~g--~~GEl~v~g~~~~~gY~~~~~~t~~~f~~g~~~TGDl~~~~~dG~l~  392 (509)
T 3ivr_A          323 AGRPLFWRTVAVVD-AEDRPLPPG--EVGEIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDMGRFDADGYLF  392 (509)
T ss_dssp             CCEECTTCEEEEEC-TTSCBCCTT--CCEEEEEESTTSCCEETTCHHHHHHHTGGGSEEEEEEEEECTTSCEE
T ss_pred             ccccCCCcEEEEEC-CCCCCCCCC--CceEEEEecCCccccccCCHHHhHHHhhcCCcccccEEEECCCceEE
Confidence            99999999999999 888888776  8999999999999999999999999999999999999 999999864

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*

Probab=100.00  E-value=7.4e-60  Score=488.75  Aligned_cols=386  Identities=22%  Similarity=0.326  Sum_probs=314.9

Q ss_pred             HHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHHHhcC
Q 010455           47 QFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQA  126 (510)
Q Consensus        47 ~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA~~~~G  126 (510)
                      ++|++.++++|+++++..... ++     +++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|
T Consensus         4 ~l~~~~a~~~p~~~a~~~~~~-~~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G   77 (503)
T 4fuq_A            4 NLFARLFDKLDDPHKLAIETA-AG-----DKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAG   77 (503)
T ss_dssp             CHHHHHHSCCSCTTSEEEEET-TC-----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHhCCCCceEEEecC-CC-----cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence            478899999999999986410 22     579999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCceeeeHHHHHH
Q 010455          127 ITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQ  206 (510)
Q Consensus       127 ~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (510)
                      ++++|+++.++.+++.+++++++++++|++.+....+....... .  ..+..++....             ..+.....
T Consensus        78 a~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~-------------~~~~~~~~  141 (503)
T 4fuq_A           78 GVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKV-G--ATVETLGPDGR-------------GSLTDAAA  141 (503)
T ss_dssp             CEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHH-T--CEEEECCTTSC-------------SHHHHHHH
T ss_pred             cEEEecCCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhc-C--ceEEEecCCcc-------------cccchhhh
Confidence            99999999999999999999999999999976554333222111 1  12333322211             11222222


Q ss_pred             cCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHH-HH
Q 010455          207 LGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII-ET  285 (510)
Q Consensus       207 ~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~-~l  285 (510)
                      ............++++++|+|||||||.||+|+++|+++.+.+..+...+     ++.++|++++.+|++|.+|+.. .+
T Consensus       142 ~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~~~~~p~~~~~g~~~~~~  216 (503)
T 4fuq_A          142 GASEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYW-----RFTPDDVLIHALPIYHTHGLFVASN  216 (503)
T ss_dssp             TSCSCCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCSSSHCCCCCCHH
T ss_pred             cCCCCcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHh-----CCCCCCEEEEeCChHHHHHHHHHHH
Confidence            22222233355789999999999999999999999999999999988877     8899999999999999999764 77


Q ss_pred             HHHhcCcEEEEeCC-CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhcccCCCCCC
Q 010455          286 HCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNK  364 (510)
Q Consensus       286 ~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (510)
                      .+++.|+++++.+. ++..+++.++  ++|+++++|+++..+++.                                   
T Consensus       217 ~~l~~g~~~~~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~-----------------------------------  259 (503)
T 4fuq_A          217 VTLFARGSMIFLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQS-----------------------------------  259 (503)
T ss_dssp             HHHHTTCEEEECSSCCHHHHHHHHT--TCCEEEECHHHHHHHHTC-----------------------------------
T ss_pred             HHHHhCCEEEEcCCCCHHHHHHHHh--hcCEEEEHHHHHHHHHhC-----------------------------------
Confidence            88999999998875 9999999998  899999999999998641                                   


Q ss_pred             chhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeeccccccccceecccCCCCccCCccccccCC
Q 010455          365 AAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTT  444 (510)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~~~~~~~~~~~~~~svG~p~~g  444 (510)
                        +.....++        +++|.+++||+++++++.+.+.+.+|+.+++.||+||++..++... .....++++|+|+|+
T Consensus       260 --~~~~~~~~--------~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~-~~~~~~~~~G~p~~~  328 (503)
T 4fuq_A          260 --PRLTKETT--------GHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNTSNPY-DGDRVPGAVGPALPG  328 (503)
T ss_dssp             --TTCSTTTT--------TTCCEEEECSSCCCHHHHHHHHHHHSCCEEECCEETTTEECBCCCS-SSCCCTTEEEEBCTT
T ss_pred             --CCccccch--------hhcEEEEECCCCCCHHHHHHHHHHhCCCccceEcccccCcccccCC-CCCCcCCccccCCCC
Confidence              11111112        3899999999999999999999999999999999999987654332 333445899999999


Q ss_pred             eEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhh-ccCccccCCe-eeccCCccC
Q 010455          445 VEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGKN-PWQYTFKKL  509 (510)
Q Consensus       445 ~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~gw~~TGDl-~~d~dG~~~  509 (510)
                      ++++|+|.+++++++.|  +.|||+|+|++++.|||++|+.+.+.| .+|||+|||+ ++|+||.+.
T Consensus       329 ~~~~i~d~~~g~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~  393 (503)
T 4fuq_A          329 VSARVTDPETGKELPRG--DIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDERGYVH  393 (503)
T ss_dssp             CEEEEECTTTCCBCCTT--CCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECTTCEEE
T ss_pred             eEEEEEECCCCCCCcCC--CceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcCCCcEE
Confidence            99999996667777766  899999999999999999999999999 6999999999 999999764

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}

Probab=100.00  E-value=2.9e-59  Score=487.85  Aligned_cols=397  Identities=18%  Similarity=0.214  Sum_probs=318.4

Q ss_pred             CCCCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHH
Q 010455           40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM  119 (510)
Q Consensus        40 ~~~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~  119 (510)
                      ...+++.++|+++++ +|+++|+++.   +      +++||+||.++++++|++|++.|+++||+|+++++|++++++++
T Consensus        21 ~~~~~~~~~l~~~~~-~p~~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~   90 (529)
T 2v7b_A           21 ALFNFAAYLFRLNET-RAGKTAYIDD---T------GSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAF   90 (529)
T ss_dssp             -CCCHHHHHHHHTGG-GTTSEEEECS---S------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHH
T ss_pred             cceeHHHHHHHhhhc-cCCceEEEeC---C------CCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHH
Confidence            345679999999999 9999999854   3      57999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCc-cEEEEecCCChhhhhHhhhcCcee
Q 010455          120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYL-KTIVSFANVSSSQKKEAEELGVSC  198 (510)
Q Consensus       120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~  198 (510)
                      |||+++|++++|+++.++.+++.++++.++++++|++.+....+.+..... ... ..++..+.....        ....
T Consensus        91 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--------~~~~  161 (529)
T 2v7b_A           91 LGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESA-EHDGCQLIVSQPRESE--------PRLA  161 (529)
T ss_dssp             HHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC----CCEEEEECC--------------CC
T ss_pred             HHHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhc-cccCceEEEecccccc--------cccc
Confidence            999999999999999999999999999999999999988766554432211 122 344443322100        0011


Q ss_pred             eeHHHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHH-HHHHhhhhhhhhhccccCCCCcEEEEecChHH
Q 010455          199 FSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAI-VAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAH  277 (510)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l-~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h  277 (510)
                      ..++++..............++++++++|||||||.||+|+++|+++ .+........+     ++.++|++++.+|++|
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~-----~~~~~d~~~~~~p~~~  236 (529)
T 2v7b_A          162 PLFEELIDAAAPAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPIL-----GIAENDVVFSAAKLFF  236 (529)
T ss_dssp             CBHHHHHHTSCCCSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCC-----CCCTTCEEEESSCTTS
T ss_pred             cchhhhhccCCCcccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhcc-----CCCCCcEEEEeecHHH
Confidence            24566655332222233457899999999999999999999999999 66666555445     7889999999999999


Q ss_pred             HHHHHH-HHHHHhcCcEEEEeC--CCHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhh
Q 010455          278 IYDQII-ETHCIHKGCSIGFWR--GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLG  354 (510)
Q Consensus       278 ~~g~~~-~l~~l~~G~~~v~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (510)
                      .+++.. ++.++..|+++++.+  .++..+++.++++++|+++++|+++..++...                        
T Consensus       237 ~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~------------------------  292 (529)
T 2v7b_A          237 AYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSP------------------------  292 (529)
T ss_dssp             HHHHHHHTHHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCT------------------------
T ss_pred             HHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCc------------------------
Confidence            999875 667999999999873  39999999999999999999999998876410                        


Q ss_pred             hcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeeccccccccceecccCCCCcc
Q 010455          355 NMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNM  434 (510)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~~~~~~~~~~~~  434 (510)
                                   ......        ..+||.+++||++++.++.+++.+.+|+.+++.||+||++.+++...... ..
T Consensus       293 -------------~~~~~~--------~~~lr~~~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~-~~  350 (529)
T 2v7b_A          293 -------------NLPARA--------DVAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGA-VE  350 (529)
T ss_dssp             -------------TCCCGG--------GCCCCEEEECSSCCCHHHHHHHHHHHSCCEEEEEECTTTSSEEEECCTTC-CC
T ss_pred             -------------cccccc--------CCceEEEEEcCCCCCHHHHHHHHHHhCCceeeeEchhhcCceeeccccCC-Cc
Confidence                         000000        02799999999999999999999989999999999999976655544333 33


Q ss_pred             CCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhhccCccccCCe-eeccCCccC
Q 010455          435 IGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGKN-PWQYTFKKL  509 (510)
Q Consensus       435 ~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDl-~~d~dG~~~  509 (510)
                      .+++|+|+++++++|+| +++++++.|  +.|||+|+|++++.|||++++.+.+.|.+|||+|||+ ++|+||++.
T Consensus       351 ~~~~G~p~~~~~~~i~d-~~g~~~~~g--~~GEl~v~g~~~~~gY~~~~~~t~~~f~~~~~~TGDl~~~~~~G~l~  423 (529)
T 2v7b_A          351 YGTTGRPVPGYEIELRD-EAGHAVPDG--EVGDLYIKGPSAAVMYWNNREKSRATFLGEWIRSGDKYCRLPNGCYV  423 (529)
T ss_dssp             TTSCCEECTTCEEEEEC-TTSCBCCTT--SCEEEEEECTTCCCCBTTCHHHHHHHEETTEEEEEEEEEECTTSCEE
T ss_pred             cCCcccCCCCCEEEEEC-CCCCCCCCC--CccEEEEecCCcccccCCChHHHHHhhhcCCcccCceEEECCCccEE
Confidence            48999999999999999 888888776  8999999999999999999999999999999999999 999999764

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*

Probab=100.00  E-value=3.3e-59  Score=484.40  Aligned_cols=380  Identities=19%  Similarity=0.249  Sum_probs=309.8

Q ss_pred             CCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHH
Q 010455           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (510)
Q Consensus        42 ~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA  121 (510)
                      +.++.++|+++++++|+++|+.+.   ++.    +++||+||.++++++|++|++.|+++||+|+++++|++++++++||
T Consensus         1 M~tl~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA   73 (504)
T 1t5h_X            1 MQTVNEMLRRAATRAPDHCALAVP---ARG----LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILA   73 (504)
T ss_dssp             CCCHHHHHHHHHHHCTTSEEEEET---TTT----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHhCCCceEEEEc---CCC----ceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence            468999999999999999999864   322    6899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEE--cCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCceee
Q 010455          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFV--QENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCF  199 (510)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  199 (510)
                      |+++|++++|+++.++.+++.++++.++++++|+  +....+.+.....    .++ ++.                    
T Consensus        74 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~----~~~-~~~--------------------  128 (504)
T 1t5h_X           74 LHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGS----GAR-IIF--------------------  128 (504)
T ss_dssp             HHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHHCC----CCE-EEE--------------------
T ss_pred             HHHhCcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhccc----cce-eEE--------------------
Confidence            9999999999999999999999999999999999  6665444412111    111 221                    


Q ss_pred             eHHHHHHcC-----CCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccC--CCCcEEEEe
Q 010455          200 SWEEFLQLG-----TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVC--SEEDTYFSF  272 (510)
Q Consensus       200 ~~~~~~~~~-----~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~--~~~d~~~~~  272 (510)
                       ++++....     ..........++++++|+|||||||.||||+++|+++.+.+..+...+     ++  ..+|++++.
T Consensus       129 -~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~-----~~~~~~~~~~l~~  202 (504)
T 1t5h_X          129 -LGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV-----GLRHGRHNVVLGL  202 (504)
T ss_dssp             -GGGTEETTEECCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTT-----CCCSSTTCEEEEC
T ss_pred             -ecchhhcCcccccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhh-----CCCCCCCceEEee
Confidence             12221110     011111345678999999999999999999999999999988877666     56  789999999


Q ss_pred             cChHHHHHHH-HHHHHHhcCcEEEEeCC-CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHH
Q 010455          273 LPLAHIYDQI-IETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYN  350 (510)
Q Consensus       273 ~pl~h~~g~~-~~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  350 (510)
                      +|++|.+++. .++.+++.|+++++.+. ++..+++.++++++|+++++|+++..+++.....                 
T Consensus       203 ~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-----------------  265 (504)
T 1t5h_X          203 MPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHA-----------------  265 (504)
T ss_dssp             SCTTSHHHHTTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCT-----------------
T ss_pred             cchhhcchHHHHHHHHHHcCceEEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccc-----------------
Confidence            9999999985 57889999999999875 9999999999999999999999999987532100                 


Q ss_pred             hhhhhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeeccccccccceecccCC
Q 010455          351 YKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLAD  430 (510)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~~~~~~~~  430 (510)
                                        .+..++        ++||.+++||+++++++.+++++.+++.+++.||+||++. +....  
T Consensus       266 ------------------~~~~~l--------~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~-~~~~~--  316 (504)
T 1t5h_X          266 ------------------GSSLKL--------DSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMN-SLYMR--  316 (504)
T ss_dssp             ------------------TCCCCC--------TTCCEEEECCTTCCHHHHHHHHHHCCSEEEEEEEETTTEE-EEEEE--
T ss_pred             ------------------cccccC--------ccccEEEEcCCcCCHHHHHHHHHhcCcceeeeeccccccc-ccccc--
Confidence                              000011        3899999999999999999999999999999999999933 33222  


Q ss_pred             CCccCCccccccCCeEEEEeecCCC---CcCCCCCCCcceEEEe-cCCccccccCCchhhhhhhccCccccCCe-eeccC
Q 010455          431 VFNMIGTVGVPMTTVEARLESVPEM---GYDALSSVPRGEICLR-GNTLFSGYYKRPDLTEEVIVDGWFHTGKN-PWQYT  505 (510)
Q Consensus       431 ~~~~~~svG~p~~g~~i~ivd~~~~---~~~~~~~~~~Gei~v~-g~~v~~gY~~~~~~~~~~~~~gw~~TGDl-~~d~d  505 (510)
                       ....+++|.|.++++++|+| +++   ++++.|  +.|||+|+ |++++.||+++|+.+.+.|.+|||+|||+ ++|+|
T Consensus       317 -~~~~~~~g~p~~~~~~~i~~-~~~~~~~~~~~g--~~GEl~v~gg~~~~~GY~~~~~~t~~~f~~g~~~TGDlg~~~~d  392 (504)
T 1t5h_X          317 -QPKTGTEMAPGFFSEVRIVR-IGGGVDEIVANG--EEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPE  392 (504)
T ss_dssp             -SCSSSSEEBCCTTCCEEEEC-TTSCTTCBCCTT--CCEEEEEECCTTSCCCBTTCHHHHHHHEETTEEEEEEEEEECTT
T ss_pred             -CCCCCccccCCCCCceeEEe-ccCCCCCcCCCC--CcceEEEeCCceeeceecCCchhhhhhhcCCccccCcEEEECCC
Confidence             22347899999999999999 666   555555  89999999 99999999999999999999999999999 99999


Q ss_pred             CccC
Q 010455          506 FKKL  509 (510)
Q Consensus       506 G~~~  509 (510)
                      |++.
T Consensus       393 G~l~  396 (504)
T 1t5h_X          393 GTVR  396 (504)
T ss_dssp             SCEE
T ss_pred             ceEE
Confidence            9864

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*

Probab=100.00  E-value=3e-59  Score=498.11  Aligned_cols=410  Identities=14%  Similarity=0.186  Sum_probs=330.4

Q ss_pred             CCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHH
Q 010455           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (510)
Q Consensus        42 ~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA  121 (510)
                      .+++.++|+++++++|+++|+++.   ++..+..+.+||+||.++++++|++|+++|+++||+|+++++|++++++++||
T Consensus        75 ~n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA  151 (652)
T 1pg4_A           75 LNLAANCLDRHLQENGDRTAIIWE---GDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLA  151 (652)
T ss_dssp             ECHHHHHTGGGHHHHTTSEEEEEE---CSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred             hhHHHHHHHHHhccCCCceEEEEE---cCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence            356889999999999999999986   43334457899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChh---------hHhhcCccCC-CCccEEEEecCCChhhhhHh
Q 010455          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP---------SILSCLPRCC-LYLKTIVSFANVSSSQKKEA  191 (510)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~  191 (510)
                      |+++|++++|+++.++.+++.+++++++++++|+++....         .+.+...... ..+..+++++.......   
T Consensus       152 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~---  228 (652)
T 1pg4_A          152 CARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDID---  228 (652)
T ss_dssp             HHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCC---
T ss_pred             HHHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCccc---
Confidence            9999999999999999999999999999999999876421         2222222111 23456666653221000   


Q ss_pred             hhcCceeeeHHHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhh-hhhhhhhccccCCCCcEEE
Q 010455          192 EELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLS-VDQMFVVTGKVCSEEDTYF  270 (510)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~-~~~~~~~~~~~~~~~d~~~  270 (510)
                       ........|++++.............++++++|+|||||||.||||+++|++++..+.. ....+     ++.++|+++
T Consensus       229 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~~l  302 (652)
T 1pg4_A          229 -WQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVF-----DYHPGDIYW  302 (652)
T ss_dssp             -CCBTTEEEHHHHHTTSCSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHT-----TCCTTCEEE
T ss_pred             -ccCCCceeHHHHHhhcCCCCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhc-----CCCCCCEEE
Confidence             00011345777765432222333456799999999999999999999999998877643 34445     788999999


Q ss_pred             EecChHHHHHHH-HHHHHHhcCcEEEEeCC-----CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHH
Q 010455          271 SFLPLAHIYDQI-IETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKL  344 (510)
Q Consensus       271 ~~~pl~h~~g~~-~~l~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~  344 (510)
                      +.+|++|..|+. .++.+|+.|+++++.+.     ++..+++.++++++|+++++|++++.+++....            
T Consensus       303 ~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~------------  370 (652)
T 1pg4_A          303 CTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDK------------  370 (652)
T ss_dssp             ECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGG------------
T ss_pred             EccCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCcc------------
Confidence            999999999985 47889999999999863     789999999999999999999999998642110            


Q ss_pred             HHHHHHhhhhhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcC---CCeeeeccccccc
Q 010455          345 FEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG---APLTQGYGLTESC  421 (510)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g---~~l~~~yG~tE~~  421 (510)
                                             ..+..++        ++||.+++||+++++++.+++.+.+|   +.+++.||+||++
T Consensus       371 -----------------------~~~~~~l--------~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~  419 (652)
T 1pg4_A          371 -----------------------AIEGTDR--------SSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETG  419 (652)
T ss_dssp             -----------------------GTTTCCC--------TTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGS
T ss_pred             -----------------------ccccCCc--------CceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCcccc
Confidence                                   0111122        38999999999999999999999888   8999999999999


Q ss_pred             cceecccCC-CCccCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEec--CCccccccCCchhhhhhh---ccCcc
Q 010455          422 SGCFTSLAD-VFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRG--NTLFSGYYKRPDLTEEVI---VDGWF  495 (510)
Q Consensus       422 ~~~~~~~~~-~~~~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g--~~v~~gY~~~~~~~~~~~---~~gw~  495 (510)
                      .+++..... ....++++|+|++|++++|+| ++|++++.|  +.|||+|+|  |+++.|||++++.+.+.|   .+|||
T Consensus       420 ~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d-~~g~~v~~g--~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~y  496 (652)
T 1pg4_A          420 GFMITPLPGAIELKAGSATRPFFGVQPALVD-NEGHPQEGA--TEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMY  496 (652)
T ss_dssp             SCSBCCCTTTCCBCTTCCBSBCTTCCEEEEC-TTCCBCCSS--EEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSE
T ss_pred             cceecCCCCCcCccCCccccCcCCCeEEEEC-CCCCCcCCC--ceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCEE
Confidence            776655433 233458999999999999999 888887765  899999999  799999999999888877   38999


Q ss_pred             ccCCe-eeccCCccC
Q 010455          496 HTGKN-PWQYTFKKL  509 (510)
Q Consensus       496 ~TGDl-~~d~dG~~~  509 (510)
                      +|||+ ++|+||++.
T Consensus       497 ~TGDlg~~d~dG~l~  511 (652)
T 1pg4_A          497 FSGDGARRDEDGYYW  511 (652)
T ss_dssp             EEEEEEEECTTSCEE
T ss_pred             ECCcEEEEcCCCcEE
Confidence            99999 999999865

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1

Probab=100.00  E-value=8.5e-59  Score=494.91  Aligned_cols=411  Identities=18%  Similarity=0.235  Sum_probs=329.7

Q ss_pred             CCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHH-hCCCCCCCEEEEEcCCchhHHHHHH
Q 010455           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMR-SRGVNPGDRCGIYGSNCPEWIIAME  120 (510)
Q Consensus        42 ~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~-~~gv~~gd~Vai~~~ns~~~~~~~l  120 (510)
                      .+++.++|+++++++|+++|+++.   ++..+..+++||+||.++++++|++|+ ++|+++||+|+++++|++++++++|
T Consensus        81 ~n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~l  157 (663)
T 1ry2_A           81 LNACYNCVDRHALKTPNKKAIIFE---GDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLL  157 (663)
T ss_dssp             ECHHHHHTHHHHTTCTTSEEEEEE---CSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHH
T ss_pred             ccHHHHHHHHHhccCCCceEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHH
Confidence            367899999999999999999986   433344578999999999999999999 9999999999999999999999999


Q ss_pred             HHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChh---------hHhhcCccCCCCccEEEEecCCChhhhhHh
Q 010455          121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP---------SILSCLPRCCLYLKTIVSFANVSSSQKKEA  191 (510)
Q Consensus       121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  191 (510)
                      ||+++|++++|+++.++.+++..++++++++++|+++....         .+.+... ..+.++.+++++......   .
T Consensus       158 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~vi~~~~~~~~~---~  233 (663)
T 1ry2_A          158 AISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALR-ETPGVRHVLVYRKTNNPS---V  233 (663)
T ss_dssp             HHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTT-SCTTCCEEEEECSSCCSS---C
T ss_pred             HHHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHH-hCCCCceEEEEecCCCCc---c
Confidence            99999999999999999999999999999999999876532         2223222 224456677665432100   0


Q ss_pred             hhcCceeeeHHHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhh-hhhhhhhccccCCCCcEEE
Q 010455          192 EELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLS-VDQMFVVTGKVCSEEDTYF  270 (510)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~-~~~~~~~~~~~~~~~d~~~  270 (510)
                      .........|+++..............++++++|+|||||||.||||+++|.+++..+.. ....+     ++.++|+++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~~~  308 (663)
T 1ry2_A          234 AFHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTF-----DTHQEDVFF  308 (663)
T ss_dssp             CCCSSSEEEHHHHHTTSCSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHS-----CCCSSCEEE
T ss_pred             ccCCCccccHHHHHhhcCCCCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhc-----CCCCCcEEE
Confidence            000112345777665432222334456899999999999999999999999998876643 33344     788999999


Q ss_pred             EecChHHHHHHH-HHHHHHhcCcEEEEeCC-----CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHH
Q 010455          271 SFLPLAHIYDQI-IETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKL  344 (510)
Q Consensus       271 ~~~pl~h~~g~~-~~l~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~  344 (510)
                      +..|++|..+.. .++.+|+.|+++++.+.     ++..+++.|+++++|+++++|++++.+.+..              
T Consensus       309 ~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~--------------  374 (663)
T 1ry2_A          309 TAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAG--------------  374 (663)
T ss_dssp             ECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSC--------------
T ss_pred             EcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcC--------------
Confidence            999999999985 47889999999999863     7899999999999999999999999875310              


Q ss_pred             HHHHHHhhhhhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcC---CCeeeeccccccc
Q 010455          345 FEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG---APLTQGYGLTESC  421 (510)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g---~~l~~~yG~tE~~  421 (510)
                                           ....+..++        ++||.+++||+++++++.+++.+.+|   +.+++.||+||++
T Consensus       375 ---------------------~~~~~~~~l--------~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~  425 (663)
T 1ry2_A          375 ---------------------DSYIENHSL--------KSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESG  425 (663)
T ss_dssp             ---------------------TTSSSSCCC--------TTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTC
T ss_pred             ---------------------ccccccCCc--------CceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCcccc
Confidence                                 000111122        38999999999999999999999887   8999999999998


Q ss_pred             cceecccC--CCCccCCccccccCCeEEEEeecC-CCCcCCCCCCCcceEEEec--CCccccccCCchhhhhhh-c--cC
Q 010455          422 SGCFTSLA--DVFNMIGTVGVPMTTVEARLESVP-EMGYDALSSVPRGEICLRG--NTLFSGYYKRPDLTEEVI-V--DG  493 (510)
Q Consensus       422 ~~~~~~~~--~~~~~~~svG~p~~g~~i~ivd~~-~~~~~~~~~~~~Gei~v~g--~~v~~gY~~~~~~~~~~~-~--~g  493 (510)
                      ..++....  .....++++|+|++|++++|+| + +|++++. .++.|||+|+|  |+++.|||++|+.+.+.| .  +|
T Consensus       426 ~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d-~~~g~~v~~-~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~g  503 (663)
T 1ry2_A          426 SHLVTPLAGGVTPMKPGSASFPFFGIDAVVLD-PNTGEELNT-SHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPG  503 (663)
T ss_dssp             SCSEECCTTTCCCCCTTCCCEECTTCCEEEEC-SSSTTCEEC-SSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTT
T ss_pred             CeeeccCCCCCcccCCCccccCcCCCeEEEEc-CCCCCcCCC-CCcceEEEEecCCCchhcccccChHHHHHhhhcCCCC
Confidence            76665543  2233458999999999999999 6 7877765 13899999999  589999999999998887 3  89


Q ss_pred             ccccCCe-eeccCCccC
Q 010455          494 WFHTGKN-PWQYTFKKL  509 (510)
Q Consensus       494 w~~TGDl-~~d~dG~~~  509 (510)
                      ||+|||+ ++|+||++.
T Consensus       504 ~y~TGDlg~~d~dG~l~  520 (663)
T 1ry2_A          504 YYFTGDGAAKDKDGYIW  520 (663)
T ss_dssp             SEEEEEEEEECTTCCEE
T ss_pred             EEEcCCEEEEcCCCCEE
Confidence            9999999 999999864

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}

Probab=100.00  E-value=3.1e-58  Score=488.13  Aligned_cols=393  Identities=16%  Similarity=0.199  Sum_probs=326.4

Q ss_pred             CCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHH
Q 010455           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (510)
Q Consensus        42 ~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA  121 (510)
                      ..++.++|+++++  ||++|+++.   +      +++||+||.++++++|++|++.|+++||+|+++++|++++++++||
T Consensus        26 ~~~l~~~~~~~a~--pd~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA   94 (617)
T 3rg2_A           26 DLPLTDILTRHAA--SDSIAVIDG---E------RQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFA   94 (617)
T ss_dssp             CCCTTHHHHTTTT--CCSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred             cCCHHHHHHHhhC--CCCeEEecC---C------ceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHH
Confidence            5789999999988  999999865   3      6899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChh----hHhhcCccCCCCccEEEEecCCChhhhhHhhhcCce
Q 010455          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP----SILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS  197 (510)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  197 (510)
                      |+++|++++|+++..+.+++.++++.+++++++++.....    ............+..+....+...            
T Consensus        95 ~l~aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  162 (617)
T 3rg2_A           95 LLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGE------------  162 (617)
T ss_dssp             HHHHTCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCCST------------
T ss_pred             HHhcCeEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeecccccc------------
Confidence            9999999999999999999999999999999999987641    111111111234444544443321            


Q ss_pred             eeeHHHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHH
Q 010455          198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAH  277 (510)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h  277 (510)
                       ..+.+...............++++++++|||||||.||||+++|+++.+.+......+     ++.++|++++.+|++|
T Consensus       163 -~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~~  236 (617)
T 3rg2_A          163 -HNLQDAINHPAEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEIC-----QFTQQTRYLCAIPAAH  236 (617)
T ss_dssp             -TBHHHHHHSCCSSCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECSCTTS
T ss_pred             -cchhhhhcccccccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhc-----CCCCcceEEEeccchh
Confidence             1234444433323333455689999999999999999999999999999999988887     8899999999999999


Q ss_pred             HHHHHH--HHHHHhcCcEEEEeCC-CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhh
Q 010455          278 IYDQII--ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLG  354 (510)
Q Consensus       278 ~~g~~~--~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (510)
                      .+++..  ++.+++.|+++++.+. ++..+++.++++++|++.++|+++..+++.......                   
T Consensus       237 ~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~-------------------  297 (617)
T 3rg2_A          237 NYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGES-------------------  297 (617)
T ss_dssp             HHHHHSSHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCC-------------------
T ss_pred             hhhhhHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccc-------------------
Confidence            998863  7889999999999875 899999999999999999999999998764322110                   


Q ss_pred             hcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeeccccccccceecccCCCCcc
Q 010455          355 NMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNM  434 (510)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~~~~~~~~~~~~  434 (510)
                                      ..++        ++||.+++||+++++++.+++.+.+|+++++.||+||++..++.........
T Consensus       298 ----------------~~~l--------~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~  353 (617)
T 3rg2_A          298 ----------------RAQL--------ASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRLDDSAEKI  353 (617)
T ss_dssp             ----------------TTTT--------TTCCEEEEESSCCCHHHHHHHHHHTCSEEEEEEEETTEEEEECCTTSCHHHH
T ss_pred             ----------------cccC--------CCccEEEEcCCcCCHHHHHHHHHHhCCcEEEEeccCcceeecccCCCccccc
Confidence                            0011        3899999999999999999999989999999999999886554433222223


Q ss_pred             CCcccccc-CCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhh-ccCccccCCe-eeccCCccC
Q 010455          435 IGTVGVPM-TTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGKN-PWQYTFKKL  509 (510)
Q Consensus       435 ~~svG~p~-~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~gw~~TGDl-~~d~dG~~~  509 (510)
                      ..++|+|+ ++++++|+| +++++++.|  +.|||+|+|++++.||+|+|+.|.+.| .+|||+|||+ ++|+||.+.
T Consensus       354 ~~~~G~p~~~~~~~~i~d-~~~~~~p~G--~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~dG~l~  428 (617)
T 3rg2_A          354 IHTQGYPMCPDDEVWVAD-AEGNPLPQG--EVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYIT  428 (617)
T ss_dssp             HHCCCEESCTTCEEEEEC-TTSCBCCTT--CCEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEE
T ss_pred             ccCCCccCCCCceEEEEC-CCCCCCCCC--CceEEEecCccccchhcCChhhhhhccCCCCceecCceEEEcCCceEE
Confidence            36789997 788999999 899888877  899999999999999999999999999 8999999999 999999764

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*

Probab=100.00  E-value=3.3e-58  Score=486.27  Aligned_cols=372  Identities=16%  Similarity=0.130  Sum_probs=308.9

Q ss_pred             CCCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHH
Q 010455           41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME  120 (510)
Q Consensus        41 ~~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~l  120 (510)
                      ...++.++|+++++++||++|+++.   +      +++||+||.++++++|++|++.|+++||+|+++++|++++++++|
T Consensus        25 ~~~tl~~~~~~~a~~~Pd~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~l   95 (620)
T 4dg8_A           25 AHPTVVARFSEMAALHPHREAIRDR---F------GSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLL   95 (620)
T ss_dssp             GSCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHhCCCCeEEEcC---C------CcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence            3579999999999999999999875   4      689999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCceeee
Q 010455          121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFS  200 (510)
Q Consensus       121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  200 (510)
                      ||+++|++++|++|.++.+++.++++.++++++++++......        .....+ .                     
T Consensus        96 ailkaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~--------~~~~~~-~---------------------  145 (620)
T 4dg8_A           96 AILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPA--------NGLPCV-P---------------------  145 (620)
T ss_dssp             HHHHTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCC--------TTSCEE-E---------------------
T ss_pred             HHHHhCCEEEeeCccChHHHHHHHHHhCCCcEEEecCcccccc--------cCCcee-e---------------------
Confidence            9999999999999999999999999999999999765433211        011111 0                     


Q ss_pred             HHHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHH
Q 010455          201 WEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD  280 (510)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g  280 (510)
                      +.... ............++++++|+|||||||.||||+++|+++.+.+.. ...+     .+.++|+++..+|++|..+
T Consensus       146 ~~~~~-~~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~-----~~~~~d~~l~~~p~~~~~~  218 (620)
T 4dg8_A          146 VRHLP-AAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFL-----AFAPQMRFLVNSPLSFDAA  218 (620)
T ss_dssp             GGGCC-CCCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGG-----TTCTTCEEEECSCTTSTHH
T ss_pred             eccCC-cCCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhh-----CCCCCCEEEEECccCHHHH
Confidence            00000 001111223346899999999999999999999999999887766 3344     7889999999999999999


Q ss_pred             HHHHHHHHhcCcEEEEeC---CCHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhcc
Q 010455          281 QIIETHCIHKGCSIGFWR---GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMK  357 (510)
Q Consensus       281 ~~~~l~~l~~G~~~v~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (510)
                      +..++.+|+.|+++++.+   .++..+++.++++++|+++++|+++..+++..                           
T Consensus       219 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~---------------------------  271 (620)
T 4dg8_A          219 TLEIWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLD---------------------------  271 (620)
T ss_dssp             HHHHHHHHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHC---------------------------
T ss_pred             HHHHHHHHhcCCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcC---------------------------
Confidence            988899999999999964   28999999999999999999999999886410                           


Q ss_pred             cCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhc-CCCeeeeccccccccceecccCCC---Cc
Q 010455          358 KGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESCSGCFTSLADV---FN  433 (510)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~-g~~l~~~yG~tE~~~~~~~~~~~~---~~  433 (510)
                                   ..++        ++||.+++||++++.+..+.+.+.+ ++++++.||+||++.++++.....   ..
T Consensus       272 -------------~~~l--------~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~  330 (620)
T 4dg8_A          272 -------------PDCL--------GGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDLEE  330 (620)
T ss_dssp             -------------GGGG--------TTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCTGGGGS
T ss_pred             -------------hhhC--------CCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheEEEeccccccCC
Confidence                         0011        3899999999999988877776655 889999999999998766543322   23


Q ss_pred             cCCccccccCCeEEEEeecCCCCc-CCCCCCCcceEEEecCCccccccCCchhhhhhh-cc-------CccccCCe-eec
Q 010455          434 MIGTVGVPMTTVEARLESVPEMGY-DALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VD-------GWFHTGKN-PWQ  503 (510)
Q Consensus       434 ~~~svG~p~~g~~i~ivd~~~~~~-~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~-------gw~~TGDl-~~d  503 (510)
                      ...++|+|+++++++|+| +++.+ ++.|  +.|||+|+|++++.||+|+|+.|.+.| .+       +||+|||+ ++|
T Consensus       331 ~~~~iG~p~~~~~~~i~d-~~~~~~~~~g--~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~  407 (620)
T 4dg8_A          331 DDIPIGKAIAGTAVLLLD-EHGQEIAEPD--RAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYD  407 (620)
T ss_dssp             SSCCCBEECTTEEEEEEC-TTSCBCCSSS--CCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEEC
T ss_pred             CCCCceecccCcEEEEEC-ccCCCCCCCC--CceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEEC
Confidence            347899999999999999 78776 4555  899999999999999999999999999 32       79999999 999


Q ss_pred             cCCccC
Q 010455          504 YTFKKL  509 (510)
Q Consensus       504 ~dG~~~  509 (510)
                      +||.+.
T Consensus       408 ~dG~l~  413 (620)
T 4dg8_A          408 EQGRLR  413 (620)
T ss_dssp             TTSCEE
T ss_pred             CCCeEE
Confidence            999764

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}

Probab=100.00  E-value=4e-58  Score=511.81  Aligned_cols=422  Identities=22%  Similarity=0.287  Sum_probs=335.4

Q ss_pred             CCCCCccccccccCCCCCCCCCCCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCC
Q 010455           20 PSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGV   99 (510)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv   99 (510)
                      +....+|++..+...+    +...++.++|+++++++|+++|+++.   +..    +.+||+||.++++++|++|++.|+
T Consensus        42 ~~~~~~~~~~~~~~~~----p~~~tl~~~l~~~a~~~pd~~Al~~~---~~~----~~~TY~eL~~~~~~lA~~L~~~Gv  110 (979)
T 3tsy_A           42 NNSDVIFRSKLPDIYI----PNHLSLHDYIFQNISEFATKPCLING---PTG----HVYTYSDVHVISRQIAANFHKLGV  110 (979)
T ss_dssp             ---CCCBCCSSCCCCC----CTTSCHHHHHTTTGGGTTTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCCCceeecCCCCCCC----CCCCCHHHHHHHHHHhCCCCeEEEEC---CCC----cEEEHHHHHHHHHHHHHHHHHcCC
Confidence            3445566666543222    23579999999999999999999865   322    689999999999999999999999


Q ss_pred             CCCCEEEEEcCCchhHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEE
Q 010455          100 NPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVS  179 (510)
Q Consensus       100 ~~gd~Vai~~~ns~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~  179 (510)
                      ++||+|+++++|++++++++|||+++|++++|++|.++.+++.+++++++++++|++.+..+.+.......  . ..++.
T Consensus       111 ~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~--~-~~~~~  187 (979)
T 3tsy_A          111 NQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDD--G-VVIVC  187 (979)
T ss_dssp             CTTCEEEEECSSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTS--C-CEEEE
T ss_pred             CCcCEEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcC--C-ceEEE
Confidence            99999999999999999999999999999999999999999999999999999999988766554432211  1 23344


Q ss_pred             ecCCChhhhhHhhhcCceeeeHHHHHHcCCC---CCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhh
Q 010455          180 FANVSSSQKKEAEELGVSCFSWEEFLQLGTL---DCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMF  256 (510)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~  256 (510)
                      +++....      ........+.++......   ........++++++|+|||||||.||+|+++|+++++.+.......
T Consensus       188 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~  261 (979)
T 3tsy_A          188 IDDNESV------PIPEGCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGE  261 (979)
T ss_dssp             CCCCTTS------CCCTTEEEGGGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSS
T ss_pred             eCCcccc------cCCcccccHHHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhh
Confidence            4332110      001123445554433211   2233446789999999999999999999999999998877654322


Q ss_pred             hhccccCCCCcEEEEecChHHHHHHHH-HHHHHhcCcEEEEeCC-CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHh
Q 010455          257 VVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKI  334 (510)
Q Consensus       257 ~~~~~~~~~~d~~~~~~pl~h~~g~~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~  334 (510)
                      .. ...+.++|++++.+|++|.+++.. ++.++..|+++++.+. ++..+++.++++++|++.++|+++..+++.     
T Consensus       262 ~~-~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-----  335 (979)
T 3tsy_A          262 NP-NLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKS-----  335 (979)
T ss_dssp             SC-SSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHC-----
T ss_pred             cc-cccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhC-----
Confidence            10 125788999999999999999965 7789999999999875 999999999999999999999999998752     


Q ss_pred             hccChhHHHHHHHHHHhhhhhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhc-CCCeee
Q 010455          335 SSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQ  413 (510)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~-g~~l~~  413 (510)
                                                      ......++        ++||.+++||+++++++.+++.+.+ ++.+++
T Consensus       336 --------------------------------~~~~~~~l--------~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~  375 (979)
T 3tsy_A          336 --------------------------------SETEKYDL--------SSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQ  375 (979)
T ss_dssp             --------------------------------GGGGTSCC--------TTCCEEEESSCCCCSSHHHHHHHHCTTCEEEE
T ss_pred             --------------------------------ccccCCCc--------cceEEEEEcCCCCCHHHHHHHHHHCCCCeEEe
Confidence                                            11111222        3899999999999999999999988 899999


Q ss_pred             eccccccccceecccC----CCCccCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhh
Q 010455          414 GYGLTESCSGCFTSLA----DVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEV  489 (510)
Q Consensus       414 ~yG~tE~~~~~~~~~~----~~~~~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~  489 (510)
                      .||+||++.+++....    ......+++|+|+++++++|+|.+++.+++.|  +.|||+|+|++++.|||++|+.+.+.
T Consensus       376 ~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g--~~GEl~i~g~~v~~GY~~~p~~t~~~  453 (979)
T 3tsy_A          376 GYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRN--QPGEICIRGHQIMKGYLNNPAATAET  453 (979)
T ss_dssp             CEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBCCTT--CCEEEEEESTTSCSEETTCHHHHHHH
T ss_pred             eechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCCCCC--CccEEEEECCCccccccCChhhhhhh
Confidence            9999999977654321    12234588999999999999995557777666  89999999999999999999999999


Q ss_pred             h-ccCccccCCe-eeccCCccC
Q 010455          490 I-VDGWFHTGKN-PWQYTFKKL  509 (510)
Q Consensus       490 ~-~~gw~~TGDl-~~d~dG~~~  509 (510)
                      | .+|||+|||+ ++|+||.+.
T Consensus       454 f~~~g~~~TGDl~~~~~dG~l~  475 (979)
T 3tsy_A          454 IDKDGWLHTGDIGLIDDDDELF  475 (979)
T ss_dssp             BCTTSCEEEEEEEEECTTSCEE
T ss_pred             ccCCCcEEcCCEEEEcCCceEE
Confidence            9 8999999999 999999864

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*

Probab=100.00  E-value=3.1e-58  Score=479.33  Aligned_cols=378  Identities=16%  Similarity=0.133  Sum_probs=312.2

Q ss_pred             CCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHH
Q 010455           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (510)
Q Consensus        42 ~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA  121 (510)
                      +.++.++|+++++++|+++|+.+.   +      +++||+||.++++++|.+|++.|+++||+|+++++|++++++++||
T Consensus         3 ~~~l~~~l~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA   73 (521)
T 3l8c_A            3 LKDMIDSIEQFAQTQADFPVYDCL---G------ERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVA   73 (521)
T ss_dssp             CCCHHHHHHHHHHHSTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCcceecC---C------CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence            578999999999999999999865   3      6899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCceeeeH
Q 010455          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW  201 (510)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  201 (510)
                      |+++|++++|+++.++.+++.++++.++++++|++++....+.        .. .                     ...+
T Consensus        74 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~--------~~-~---------------------~~~~  123 (521)
T 3l8c_A           74 LTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIE--------GI-S---------------------LVSL  123 (521)
T ss_dssp             HHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCCT--------TS-E---------------------EEEH
T ss_pred             HHHhCCEEEecCccccHHHHHHHHHhCCCCEEEecCccccccc--------cC-c---------------------ccch
Confidence            9999999999999999999999999999999999876543211        11 1                     1122


Q ss_pred             HHHHH---cCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHH
Q 010455          202 EEFLQ---LGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHI  278 (510)
Q Consensus       202 ~~~~~---~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~  278 (510)
                      .++..   ............++++++|+|||||||.||+|++||+++.+.+.+.....   .......+++++..|++|.
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~  200 (521)
T 3l8c_A          124 SEIESAKLAEMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDA---AFDVPKQPQMLAQPPYSFD  200 (521)
T ss_dssp             HHHHHHHHHTCCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCT---TTCCCSSCEEECCSCTTSG
T ss_pred             hhhhhcccccCCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhcc---ccCCCCCCeEEecCCccHH
Confidence            22211   11112223345789999999999999999999999999998887765542   1267889999999999999


Q ss_pred             HHHHHHHHHHhcCcEEEEeCC----CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhh
Q 010455          279 YDQIIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLG  354 (510)
Q Consensus       279 ~g~~~~l~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (510)
                      .++...+.++..|+++++.+.    ++..+++.+.++++|++.++|+++..++..                         
T Consensus       201 ~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-------------------------  255 (521)
T 3l8c_A          201 LSVMYWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLS-------------------------  255 (521)
T ss_dssp             GGHHHHHHHHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTS-------------------------
T ss_pred             HHHHHHHHHHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhh-------------------------
Confidence            888778889999999998764    889999999999999999999999887531                         


Q ss_pred             hcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhc-CCCeeeeccccccccceecccCCC--
Q 010455          355 NMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESCSGCFTSLADV--  431 (510)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~-g~~l~~~yG~tE~~~~~~~~~~~~--  431 (510)
                                  ......++        ++||.+++||+++++++.+.+.+.+ ++.+++.||+||++..++......  
T Consensus       256 ------------~~~~~~~~--------~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~  315 (521)
T 3l8c_A          256 ------------DDFCQAKM--------PALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREM  315 (521)
T ss_dssp             ------------TTCSTTTC--------TTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEEECHHH
T ss_pred             ------------hccccccC--------ccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHhhhhceeeccccc
Confidence                        00111111        3899999999999999999998888 899999999999988766533221  


Q ss_pred             --CccCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhh----ccCccccCCe-eecc
Q 010455          432 --FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI----VDGWFHTGKN-PWQY  504 (510)
Q Consensus       432 --~~~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~----~~gw~~TGDl-~~d~  504 (510)
                        ....+++|+|+|+++++|+| ++|.+++.|  +.|||+|+||+++.|||++|+.+.+.|    .+|||+|||+ ++|+
T Consensus       316 ~~~~~~~~vG~p~~~~~~~i~d-~~g~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~  392 (521)
T 3l8c_A          316 VDNYTRLPIGYPKPDSPTYIID-EDGKELSSG--EQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTE  392 (521)
T ss_dssp             HHHCSSCEEEEECTTSCEEEEC-TTSCBCCTT--CCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECS
T ss_pred             ccCCCccccccccCCCEEEEEC-CCcCCCCCC--CceEEEecccccChhhcCCchHhhccCcCCCCceeeeCCCEEEEeC
Confidence              12336899999999999999 888888776  899999999999999999999999998    3579999999 9999


Q ss_pred             CCccC
Q 010455          505 TFKKL  509 (510)
Q Consensus       505 dG~~~  509 (510)
                      ||++.
T Consensus       393 dG~l~  397 (521)
T 3l8c_A          393 DNILL  397 (521)
T ss_dssp             SSCEE
T ss_pred             CCeEE
Confidence            99764

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*

Probab=100.00  E-value=1.4e-58  Score=480.68  Aligned_cols=376  Identities=18%  Similarity=0.186  Sum_probs=311.0

Q ss_pred             CHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHHH
Q 010455           44 SPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACN  123 (510)
Q Consensus        44 sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA~~  123 (510)
                      ++.++|+++++++|+++|+++.   +      +++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+
T Consensus         2 ~l~~~l~~~a~~~p~~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~~   72 (512)
T 3fce_A            2 KLLEQIEKWAAETPDQTAFVWR---D------AKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCV   72 (512)
T ss_dssp             CHHHHHHHHHHHSTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHCCCceEEEeC---C------ceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHH
Confidence            7899999999999999999875   4      689999999999999999999999999999999999999999999999


Q ss_pred             hcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCceeeeHHH
Q 010455          124 SQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEE  203 (510)
Q Consensus       124 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (510)
                      ++|++++|+++.++.+++.++++.++++++|++.......        .. ..++..                  ..+..
T Consensus        73 ~~G~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~--------~~-~~~~~~------------------~~~~~  125 (512)
T 3fce_A           73 KAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVTD--------LP-VRIVSE------------------DNLKD  125 (512)
T ss_dssp             HTTCCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCSSC--------CS-SEEEET------------------HHHHH
T ss_pred             HhCCEEEeeCCCCcHHHHHHHHHhcCCCEEEecCcccccc--------cc-cceech------------------hhhhh
Confidence            9999999999999999999999999999999975432110        00 011110                  01122


Q ss_pred             HHHcC--CCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHH
Q 010455          204 FLQLG--TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ  281 (510)
Q Consensus       204 ~~~~~--~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~  281 (510)
                      +....  ..........++++++|+|||||||.||+|+++|+++.+.+.+....+     ++.++|++++.+|++|..++
T Consensus       126 ~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~~  200 (512)
T 3fce_A          126 IFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDF-----NLQTGQVFLNQAPFSFDLSV  200 (512)
T ss_dssp             HHHHTTTCCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHT-----TCCSSCEEEECSCTTSGGGH
T ss_pred             hcccccccCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhc-----CCCCCCEEEEeCCccHhHHH
Confidence            22111  111223345689999999999999999999999999999999888777     88999999999999999998


Q ss_pred             HHHHHHHhcCcEEEEeCC----CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhcc
Q 010455          282 IIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMK  357 (510)
Q Consensus       282 ~~~l~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (510)
                      ..++.+++.|+++++.+.    ++..+++.++++++|++.++|+++..++..                            
T Consensus       201 ~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~----------------------------  252 (512)
T 3fce_A          201 MDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLME----------------------------  252 (512)
T ss_dssp             HHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTS----------------------------
T ss_pred             HHHHHHHhCCCEEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhh----------------------------
Confidence            888899999999999874    899999999999999999999999887531                            


Q ss_pred             cCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhc-CCCeeeeccccccccceecccCCC----C
Q 010455          358 KGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESCSGCFTSLADV----F  432 (510)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~-g~~l~~~yG~tE~~~~~~~~~~~~----~  432 (510)
                               ......++        ++||.+++||+++++++.+++.+.+ ++.+++.||+||++..++......    .
T Consensus       253 ---------~~~~~~~~--------~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~  315 (512)
T 3fce_A          253 ---------ASFSESML--------PNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQ  315 (512)
T ss_dssp             ---------TTCSTTTS--------TTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEECCHHHHHH
T ss_pred             ---------ccccchhC--------ccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhheeeEEeccccccc
Confidence                     11111112        3899999999999999999999988 889999999999988766543322    1


Q ss_pred             ccCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhhc----cCccccCCe-eeccCCc
Q 010455          433 NMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV----DGWFHTGKN-PWQYTFK  507 (510)
Q Consensus       433 ~~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~----~gw~~TGDl-~~d~dG~  507 (510)
                      ....++|+|+++++++|+| ++|.+++.|  +.|||+|+||+++.|||++|+.+.+.|.    +|||+|||+ ++ +||+
T Consensus       316 ~~~~~~G~~~~~~~~~i~d-~~g~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~-~dG~  391 (512)
T 3fce_A          316 YKSLPVGYCKSDCRLLIMK-EDGTIAPDG--EKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENGL  391 (512)
T ss_dssp             CSSCCCEEECTTCEEEEEC-SSSCBCCTT--SCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEE-ETTE
T ss_pred             cCCCccccccCCcEEEEEC-CCCCCCCCC--CeEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCCceEEe-cCCE
Confidence            2347899999999999999 888888776  8999999999999999999999999982    569999999 99 7887


Q ss_pred             cC
Q 010455          508 KL  509 (510)
Q Consensus       508 ~~  509 (510)
                      +.
T Consensus       392 l~  393 (512)
T 3fce_A          392 LF  393 (512)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1

Probab=100.00  E-value=1.9e-57  Score=476.50  Aligned_cols=373  Identities=19%  Similarity=0.289  Sum_probs=308.4

Q ss_pred             CCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHH
Q 010455           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (510)
Q Consensus        42 ~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA  121 (510)
                      ..++.++|+++++++|+++|+++.   +      +.+||+||.++++++|++|++.|+++||+|+++++|++++++++||
T Consensus        38 ~~~l~~~l~~~a~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA  108 (563)
T 1amu_A           38 DKTIHQLFEEQVSKRPNNVAIVCE---N------EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILA  108 (563)
T ss_dssp             TCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHCCCCeEEEeC---C------ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence            468999999999999999999864   3      6899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCceeeeH
Q 010455          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW  201 (510)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  201 (510)
                      |+++|++++|+++.++.+++.++++.++++++|++.+....+....     ....+..+....                 
T Consensus       109 ~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~~-----~~~~~~~~~~~~-----------------  166 (563)
T 1amu_A          109 VLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQ-----FNGQVEIFEEDT-----------------  166 (563)
T ss_dssp             HHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSC-----CCSEEEECCCST-----------------
T ss_pred             HHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhcc-----ccCceeeecchh-----------------
Confidence            9999999999999999999999999999999999887655442211     111222222110                 


Q ss_pred             HHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHH
Q 010455          202 EEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ  281 (510)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~  281 (510)
                        + .............++++++|+|||||||.||||++||+++.+.+..+...+     ++.++|++++.+|++|..++
T Consensus       167 --~-~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~~  238 (563)
T 1amu_A          167 --I-KIREGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSL-----NVTEKDRIGQFASISFDASV  238 (563)
T ss_dssp             --T-TTSCCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTS-----CCCTTCEEEECSCTTSTHHH
T ss_pred             --h-ccccCccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhc-----CCCCCCEEEEeCCccHHHHH
Confidence              0 000111112344678999999999999999999999999999888877766     78899999999999999998


Q ss_pred             HHHHHHHhcCcEEEEeCC----CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhcc
Q 010455          282 IIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMK  357 (510)
Q Consensus       282 ~~~l~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (510)
                      ..++.+++.|+++++.+.    ++..+++.++++++|++.++|+++..+..                             
T Consensus       239 ~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~-----------------------------  289 (563)
T 1amu_A          239 WEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDP-----------------------------  289 (563)
T ss_dssp             HHHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCT-----------------------------
T ss_pred             HHHHHHHHCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHh-----------------------------
Confidence            878889999999998763    88999999999999999999999876531                             


Q ss_pred             cCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeeccccccccceecccCCC--CccC
Q 010455          358 KGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADV--FNMI  435 (510)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~~~~~~~~~--~~~~  435 (510)
                              .      .+        .+||.+++||+++++++.+.+.+  ++.+++.||+||++.+++......  ....
T Consensus       290 --------~------~~--------~~lr~~~~gG~~l~~~~~~~~~~--~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~  345 (563)
T 1amu_A          290 --------E------RI--------LSIQTLITAGSATSPSLVNKWKE--KVTYINAYGPTETTICATTWVATKETIGHS  345 (563)
T ss_dssp             --------T------TC--------CSCSEEEEESSCCCHHHHHHHTT--TSEEEEEECCGGGSSCSEEEECCSSCCCSS
T ss_pred             --------c------cc--------ccccEEEEEEecCCHHHHHHHHh--CCeEEEEECcCHHhHhheeeecccccCCCC
Confidence                    0      01        38999999999999999999877  478999999999987666543322  2234


Q ss_pred             CccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhhc-------cCccccCCe-eeccCCc
Q 010455          436 GTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV-------DGWFHTGKN-PWQYTFK  507 (510)
Q Consensus       436 ~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~-------~gw~~TGDl-~~d~dG~  507 (510)
                      .++|+|+++++++|+| +++++++.|  +.|||+|+|++++.|||++|+.|.++|.       +|||+|||+ ++|+||+
T Consensus       346 ~~vG~p~~~~~v~i~d-~~~~~~~~g--~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~  422 (563)
T 1amu_A          346 VPIGAPIQNTQIYIVD-ENLQLKSVG--EAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGN  422 (563)
T ss_dssp             CCCBEECTTEEEEEEC-TTSCBCCTT--CEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSC
T ss_pred             CcccceeCCCEEEEEC-CCcCCCCCC--CcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcCCCe
Confidence            7899999999999999 888887776  8999999999999999999999999983       259999999 9999998


Q ss_pred             cC
Q 010455          508 KL  509 (510)
Q Consensus       508 ~~  509 (510)
                      +.
T Consensus       423 l~  424 (563)
T 1amu_A          423 IE  424 (563)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*

Probab=100.00  E-value=1.1e-57  Score=473.71  Aligned_cols=375  Identities=18%  Similarity=0.231  Sum_probs=314.9

Q ss_pred             CHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhC-CCCCCCEEEEEcCCchhHHHHHHHH
Q 010455           44 SPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSR-GVNPGDRCGIYGSNCPEWIIAMEAC  122 (510)
Q Consensus        44 sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~-gv~~gd~Vai~~~ns~~~~~~~lA~  122 (510)
                      ++.++|+++++++|+++|+.+.   +      +++||+||.++++++|.+|++. |+++|++|+++++|++++++++|||
T Consensus         2 ~l~~~l~~~a~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~   72 (511)
T 3e7w_A            2 KLLHAIQTHAETYPQTDAFRSQ---G------QSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGS   72 (511)
T ss_dssp             CHHHHHHHHHHHSTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHCCCCeEEEcC---C------ceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHH
Confidence            7899999999999999999865   3      6899999999999999999885 8899999999999999999999999


Q ss_pred             HhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCceeeeHH
Q 010455          123 NSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWE  202 (510)
Q Consensus       123 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  202 (510)
                      +++|++++|+++.++.+++.++++.++++++|++.......   ..   ..                      .....++
T Consensus        73 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~---~~---~~----------------------~~~~~~~  124 (511)
T 3e7w_A           73 VKAGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSIDA---VG---QQ----------------------IQTVSAE  124 (511)
T ss_dssp             HHHTCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTTC---CC---CS----------------------SCEEEHH
T ss_pred             HHhCCEEEecCCCChHHHHHHHHHhCCCCEEEecccccchh---cc---cc----------------------cceecHh
Confidence            99999999999999999999999999999999976432110   00   00                      1123445


Q ss_pred             HHHHcCC-CCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHH
Q 010455          203 EFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ  281 (510)
Q Consensus       203 ~~~~~~~-~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~  281 (510)
                      ++..... .........++++++|+|||||||.||+|++||+++.+.+.+....+     ++..+|++++.+|++|..++
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~~  199 (511)
T 3e7w_A          125 ELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADF-----PVSGGKIFLNQAPFSFDLSV  199 (511)
T ss_dssp             HHHTSCSCCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHS-----TTTTTCEEEECSCTTSTHHH
T ss_pred             hhhccccCCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhc-----CCCccceEEEeCCccHHHHH
Confidence            5544331 11222335678999999999999999999999999999999888777     78899999999999999998


Q ss_pred             HHHHHHHhcCcEEEEeCC----CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhcc
Q 010455          282 IIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMK  357 (510)
Q Consensus       282 ~~~l~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (510)
                      ..++.+++.|+++++.+.    ++..+++.++++++|++.++|+++..++..                            
T Consensus       200 ~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~----------------------------  251 (511)
T 3e7w_A          200 MDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMD----------------------------  251 (511)
T ss_dssp             HHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTS----------------------------
T ss_pred             HHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhc----------------------------
Confidence            888899999999999764    899999999999999999999999987641                            


Q ss_pred             cCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhc-CCCeeeeccccccccceecccCCC----C
Q 010455          358 KGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESCSGCFTSLADV----F  432 (510)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~-g~~l~~~yG~tE~~~~~~~~~~~~----~  432 (510)
                               +.....++        +++|.+++||+++++++.+++.+.+ ++.+++.||+||++..++......    .
T Consensus       252 ---------~~~~~~~~--------~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~  314 (511)
T 3e7w_A          252 ---------PGFSQDLL--------PHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVISR  314 (511)
T ss_dssp             ---------TTCSTTTC--------TTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCSEEEEECHHHHTT
T ss_pred             ---------cccccccC--------CcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeeeeEEecccccccc
Confidence                     11111112        3899999999999999999999988 899999999999988766533221    2


Q ss_pred             ccCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhh--ccC--ccccCCe-eeccCCc
Q 010455          433 NMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI--VDG--WFHTGKN-PWQYTFK  507 (510)
Q Consensus       433 ~~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~--~~g--w~~TGDl-~~d~dG~  507 (510)
                      ....++|+|+|+++++|+| ++|++++.|  +.|||+|+||+++.|||++|+.+.+.|  .+|  ||+|||+ ++ +||.
T Consensus       315 ~~~~~~G~~~~~~~~~i~d-~~g~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~-~dG~  390 (511)
T 3e7w_A          315 SESLPVGFAKPDMNIFIMD-EEGQPLPEG--EKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFI-QDGQ  390 (511)
T ss_dssp             CSSCCCBEECTTCEEEEEC-TTSCBCCTT--CCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEE-ETTE
T ss_pred             CCcCCCcceeCCCEEEEEC-CCCCCCCCC--CceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCCeEEc-cCCe
Confidence            2336799999999999999 888888776  899999999999999999999999999  344  8999999 99 4887


Q ss_pred             cC
Q 010455          508 KL  509 (510)
Q Consensus       508 ~~  509 (510)
                      +.
T Consensus       391 l~  392 (511)
T 3e7w_A          391 IF  392 (511)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*

Probab=100.00  E-value=2.2e-57  Score=480.39  Aligned_cols=393  Identities=18%  Similarity=0.214  Sum_probs=314.5

Q ss_pred             CCCCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHH
Q 010455           40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM  119 (510)
Q Consensus        40 ~~~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~  119 (510)
                      ....++.++|+++++++||++|+++.   ++  +..+++||+||.++++++|++|++.|+++||+|+++++|++++++++
T Consensus         8 ~~~~tl~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~   82 (590)
T 3kxw_A            8 LQCQSLVDVVRLRALHSPNKKSCTFL---NK--ELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAF   82 (590)
T ss_dssp             HTCSSHHHHHHHHHHHCTTSEEEEEE---ET--TEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred             cCcccHHHHHHHHHHhCCCCeEEEEE---cC--CeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHH
Confidence            34689999999999999999999886   42  22378999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCeEEEecCCC---CHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCc
Q 010455          120 EACNSQAITYVPLYDTL---GANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGV  196 (510)
Q Consensus       120 lA~~~~G~~~v~l~~~~---~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  196 (510)
                      |||+++|++++|++|..   +.+++.++++.+++++++++.+....+.............+..                 
T Consensus        83 lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~-----------------  145 (590)
T 3kxw_A           83 LGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIPA-----------------  145 (590)
T ss_dssp             HHHHHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTEEE-----------------
T ss_pred             HHHHHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhcccccccce-----------------
Confidence            99999999999999988   4578999999999999999877655443322111111111111                 


Q ss_pred             eeeeHHHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChH
Q 010455          197 SCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLA  276 (510)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~  276 (510)
                        ...+.+..............++++++|+|||||||.||||++||+++++.+.+....+     ++.++|++++++|++
T Consensus       146 --~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~  218 (590)
T 3kxw_A          146 --IALESIELNRSSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSF-----HMNDETIIFSWLPPH  218 (590)
T ss_dssp             --EEGGGCCGGGGGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTT
T ss_pred             --eechhccccccccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhh-----CCCCcCeEEEecCCC
Confidence              1111111111111223455789999999999999999999999999999999988877     889999999999999


Q ss_pred             HHHHHHH-HHHHHhcCcEEEEeCC-----CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHH
Q 010455          277 HIYDQII-ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYN  350 (510)
Q Consensus       277 h~~g~~~-~l~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  350 (510)
                      |.+|+.. ++.+++.|+++++.+.     ++..+++.++++++|++.++|.++..+++.+..                  
T Consensus       219 h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~------------------  280 (590)
T 3kxw_A          219 HDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIRE------------------  280 (590)
T ss_dssp             SHHHHHTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCG------------------
T ss_pred             cchhhHHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhh------------------
Confidence            9999986 8889999999999763     789999999999999999999999988753211                  


Q ss_pred             hhhhhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcC------CCeeeeccccccccce
Q 010455          351 YKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG------APLTQGYGLTESCSGC  424 (510)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g------~~l~~~yG~tE~~~~~  424 (510)
                                      ...+..++        ++||.+++||+++++++.+++.+.++      ..+++.||+||++.++
T Consensus       281 ----------------~~~~~~~l--------~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~  336 (590)
T 3kxw_A          281 ----------------EKKEGLDL--------SSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLV  336 (590)
T ss_dssp             ----------------GGGTTCCC--------TTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEE
T ss_pred             ----------------hhccCCCc--------hhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCcccccccccccccccee
Confidence                            11111222        38999999999999999999998873      4699999999999877


Q ss_pred             ecccCC--------------------------CCccCCccccccCCeEEEEeecCC-CCcCCCCCCCcceEEEecCCccc
Q 010455          425 FTSLAD--------------------------VFNMIGTVGVPMTTVEARLESVPE-MGYDALSSVPRGEICLRGNTLFS  477 (510)
Q Consensus       425 ~~~~~~--------------------------~~~~~~svG~p~~g~~i~ivd~~~-~~~~~~~~~~~Gei~v~g~~v~~  477 (510)
                      +.....                          ......++|+|+++  ++|+| ++ +.+++.|  +.|||+|+||+++.
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d-~~~~~~~~~g--~~GEl~v~g~~v~~  411 (590)
T 3kxw_A          337 TGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIID-PDTLIPCDFD--QVGEIWVQSNSVAK  411 (590)
T ss_dssp             EECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEEC-TTTCCBCCTT--BCEEEEEESTTSCC
T ss_pred             ecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEc-CCCCcCCCCC--CEEEEEEeCCcccc
Confidence            754321                          11223688999998  88899 55 6666665  89999999999999


Q ss_pred             cccCCchhhhhhhcc-------C--ccccCCe-eeccCCccC
Q 010455          478 GYYKRPDLTEEVIVD-------G--WFHTGKN-PWQYTFKKL  509 (510)
Q Consensus       478 gY~~~~~~~~~~~~~-------g--w~~TGDl-~~d~dG~~~  509 (510)
                      |||++|+.+.++|.+       |  ||+|||+ ++| ||.+.
T Consensus       412 GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~  452 (590)
T 3kxw_A          412 GYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELY  452 (590)
T ss_dssp             CBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEE
T ss_pred             cccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEE
Confidence            999999999999943       5  9999999 999 88754

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}

Probab=100.00  E-value=6.5e-57  Score=473.58  Aligned_cols=393  Identities=17%  Similarity=0.151  Sum_probs=312.4

Q ss_pred             CCCCCHHHHHHHHHhhCCCCcceeeeeccCC----CCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhH
Q 010455           40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDG----KVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEW  115 (510)
Q Consensus        40 ~~~~sl~~~l~~~a~~~p~~~a~~~~~~~~~----~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~  115 (510)
                      .+..++.++|+++++++|+++|+++.   ++    ..+..+++||+||.++++++|++|++.|+ +||+|+++++|++++
T Consensus        17 ~~~~tl~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~   92 (562)
T 3ite_A           17 TSTVPPSHYIETWAKTHPEWKAVEVA---TGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIA   92 (562)
T ss_dssp             -CCCCTTHHHHHHHHHCTTSEEEEEE---ECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHH
T ss_pred             cccCCHHHHHHHHHHHCCCchhhhcc---cccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHH
Confidence            45678999999999999999999876   32    12234789999999999999999999999 799999999999999


Q ss_pred             HHHHHHHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcC
Q 010455          116 IIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELG  195 (510)
Q Consensus       116 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  195 (510)
                      ++++|||+++|++++|+++.++.+++.++++.++++++|++++....+.      ......++...  .           
T Consensus        93 ~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~--~-----------  153 (562)
T 3ite_A           93 FAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVE------LPPETKVLDTK--N-----------  153 (562)
T ss_dssp             HHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCC------CCTTCEEEETT--C-----------
T ss_pred             HHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEccccccccc------cCccceeeccc--c-----------
Confidence            9999999999999999999999999999999999999999876543221      01111222111  0           


Q ss_pred             ceeeeHHHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhh---ccccCCCCcEEEEe
Q 010455          196 VSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVV---TGKVCSEEDTYFSF  272 (510)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~---~~~~~~~~d~~~~~  272 (510)
                         ..+.+...............++++++|+|||||||.||||+++|+++.+.+..+...+..   ....+...+++++.
T Consensus       154 ---~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (562)
T 3ite_A          154 ---QSFIENLSTQDTSDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCL  230 (562)
T ss_dssp             ---HHHHHHHHHSCCSCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECC
T ss_pred             ---hhhhhhcccccccccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEe
Confidence               112222222222222334457889999999999999999999999999988776554321   11257788999999


Q ss_pred             cChHHHHHHHHHHHHHhcCcEEEEeCC--CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHH
Q 010455          273 LPLAHIYDQIIETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYN  350 (510)
Q Consensus       273 ~pl~h~~g~~~~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  350 (510)
                      .|+.|..++..++.++..|+++++.+.  .+..+++.++++++|++.++|++++.+..                      
T Consensus       231 ~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~----------------------  288 (562)
T 3ite_A          231 ASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGL----------------------  288 (562)
T ss_dssp             SCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTC----------------------
T ss_pred             cCchhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhccc----------------------
Confidence            999998888878889999999998764  46788999999999999999998876421                      


Q ss_pred             hhhhhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeeccccccccceecccCC
Q 010455          351 YKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLAD  430 (510)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~~~~~~~~  430 (510)
                                     .+    .++        ++||.+++||+++++++.+++++.+++.+++.||+||++..++.....
T Consensus       289 ---------------~~----~~~--------~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~  341 (562)
T 3ite_A          289 ---------------VP----EDA--------PHLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVTIGCSAGRIL  341 (562)
T ss_dssp             ---------------CG----GGS--------TTCCEEEEESSCCCHHHHHHHTTCSSCEEEEEECCGGGCSCSEEEECC
T ss_pred             ---------------Cc----ccc--------CceEEEEEecCCCCHHHHHHHhhCCCcEEEEeeccchheeeeeeeeec
Confidence                           00    011        389999999999999999999988899999999999998877765554


Q ss_pred             CCccCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhhccC--ccccCCe-eeccCCc
Q 010455          431 VFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDG--WFHTGKN-PWQYTFK  507 (510)
Q Consensus       431 ~~~~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~g--w~~TGDl-~~d~dG~  507 (510)
                      .....+++|+|+++++++|+|.+++.+++.|  +.|||+|+|++++.|||++|+.+...+.+|  ||+|||+ ++|+||+
T Consensus       342 ~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g--~~GEl~v~g~~v~~GY~~~p~~t~~~~~~g~~w~~TGDlg~~d~dG~  419 (562)
T 3ite_A          342 PDSDTRCIGHPLGDSVAHVLAPGSNEHVKKG--MAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTGDIVRMDADSS  419 (562)
T ss_dssp             TTSCTTEEEEECTTCEEEEECTTSSCBCCTT--SCEEEEEESTTSCCEESSCTTCCSEEEETTEEEEEEEEEEEECTTSC
T ss_pred             CCCCCccccccCCCCeEEEEeCCCCCCCCCC--CceEEEEeccccchhhCCCccccccccCCCCEEEecCCEEEEcCCCe
Confidence            4444588999999999999994445556555  899999999999999999999988776666  9999999 9999998


Q ss_pred             cC
Q 010455          508 KL  509 (510)
Q Consensus       508 ~~  509 (510)
                      +.
T Consensus       420 l~  421 (562)
T 3ite_A          420 IL  421 (562)
T ss_dssp             EE
T ss_pred             EE
Confidence            65

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*

Probab=100.00  E-value=3.9e-57  Score=468.39  Aligned_cols=374  Identities=24%  Similarity=0.325  Sum_probs=302.7

Q ss_pred             CCCCHHHHHHHHHhhCCC-CcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHH
Q 010455           41 GLESPWQFFCDSAKRIPN-NQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM  119 (510)
Q Consensus        41 ~~~sl~~~l~~~a~~~p~-~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~  119 (510)
                      ++.++.++|.++++++|+ ++|+++.   +      +++||+||.++++++|.+|.     .|++|+++++|++++++++
T Consensus        20 ~~~tl~~~l~~~a~~~p~d~~Al~~~---~------~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~~   85 (505)
T 3nyq_A           20 HMSSLFPALSPAPTGAPADRPALRFG---E------RSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVAV   85 (505)
T ss_dssp             ----CCTTTSSCCCSGGGGSEEEEET---T------EEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHHH
T ss_pred             ccchhHHHHHHHHHhCCCCCeEEEEC---C------eeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHHH
Confidence            467888999999999887 9999865   3      68999999999999998774     4899999999999999999


Q ss_pred             HHHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCceee
Q 010455          120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCF  199 (510)
Q Consensus       120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  199 (510)
                      |||+++|++++|++|.++.+++.+++++++++++|++.....      ......+..+ .....                
T Consensus        86 la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~------~~~~~~~~~~-~~~~~----------------  142 (505)
T 3nyq_A           86 VAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAEL------PPALGALERV-DVDVR----------------  142 (505)
T ss_dssp             HHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCC------CGGGTTSEEE-ECCTT----------------
T ss_pred             HHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCcccc------chhhcccccc-ccccc----------------
Confidence            999999999999999999999999999999999999865211      0001111111 11100                


Q ss_pred             eHHHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHH
Q 010455          200 SWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIY  279 (510)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~  279 (510)
                              ...........++++++++|||||||.||||+++|+++.+.+..+...+     ++..+|++++.+|++|..
T Consensus       143 --------~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~  209 (505)
T 3nyq_A          143 --------ARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAW-----QWTGEDVLVQGLPLFHVH  209 (505)
T ss_dssp             --------CCCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECCCTTSHH
T ss_pred             --------cccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHh-----CCCCCcEEEEeccHHHHH
Confidence                    0111122345678999999999999999999999999999999988887     888999999999999999


Q ss_pred             HHHH-HHHHHhcCcEEEEeCC-CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhcc
Q 010455          280 DQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMK  357 (510)
Q Consensus       280 g~~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (510)
                      |+.. ++.++..|+++++.+. ++..+++.+ ++++|+++++|+++..+++.+..                         
T Consensus       210 g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~-------------------------  263 (505)
T 3nyq_A          210 GLVLGILGPLRRGGSVRHLGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPA-------------------------  263 (505)
T ss_dssp             HHTTTTHHHHHHTCEEEECSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGG-------------------------
T ss_pred             HHHHHHHHHHhcCCEEEECCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhc-------------------------
Confidence            9874 7889999999998875 899999999 88999999999999998763211                         


Q ss_pred             cCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeeccccccccceecccCCCCccCCc
Q 010455          358 KGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGT  437 (510)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~~~~~~~~~~~~~~s  437 (510)
                              .+ ....+++        ++|.+++||++++.++.+++.+.+|+++++.||+||++..++...... ...++
T Consensus       264 --------~~-~~~~~l~--------~lr~i~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~-~~~~~  325 (505)
T 3nyq_A          264 --------DP-ELAKALA--------GARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADGE-PRAGT  325 (505)
T ss_dssp             --------CH-HHHHHHH--------HCSEEEECSSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCTTSC-CCTTC
T ss_pred             --------Cc-hhhcccc--------cceEEEECCCCCCHHHHHHHHHhcCCeeecccchhhcccccccCCCCC-CCCCC
Confidence                    11 1122333        899999999999999999999989999999999999987766544433 33489


Q ss_pred             cccccCCeEEEEeecCCCCcCCC-CCCCcceEEEecCCccccccCCchhhhhhh-ccCccccCCe-eeccCCccC
Q 010455          438 VGVPMTTVEARLESVPEMGYDAL-SSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGKN-PWQYTFKKL  509 (510)
Q Consensus       438 vG~p~~g~~i~ivd~~~~~~~~~-~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~gw~~TGDl-~~d~dG~~~  509 (510)
                      +|+|+++++++|+| +++++++. ..++.|||+|+|++++.|||++|+.+.+.| .+|||+|||+ ++|+||.+.
T Consensus       326 vG~p~~~~~~~i~d-~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~dG~l~  399 (505)
T 3nyq_A          326 VGVPLPGVELRLVE-EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVR  399 (505)
T ss_dssp             CCEECTTCEEEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEECTTSCEE
T ss_pred             cccCCCCCEEEEEC-CCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeEEECCCccEE
Confidence            99999999999999 88887775 335899999999999999999999999999 7999999999 999999764

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=100.00  E-value=8.2e-57  Score=466.38  Aligned_cols=386  Identities=20%  Similarity=0.277  Sum_probs=303.9

Q ss_pred             CHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHHH
Q 010455           44 SPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACN  123 (510)
Q Consensus        44 sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA~~  123 (510)
                      |+.++|+++++++|+++|+++.   +      +++||+||.++++++|.+|++.   +||+|+++++|++++++++|||+
T Consensus         2 tl~~~l~~~a~~~pd~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~   69 (501)
T 3ipl_A            2 SLDFWLYKQAQQNGHHIAITDG---Q------ESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACW   69 (501)
T ss_dssp             -CCCHHHHHHHHHTTSEEEECS---S------CEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhcCCceEEEeC---C------cEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHH
Confidence            5678999999999999999865   3      5899999999999999999987   89999999999999999999999


Q ss_pred             hcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCcee-eeHH
Q 010455          124 SQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSC-FSWE  202 (510)
Q Consensus       124 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~  202 (510)
                      ++|++++|+++.++.+++.++++.++++++|++.+...........  ..+..+..........   ........ ...+
T Consensus        70 ~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~  144 (501)
T 3ipl_A           70 LANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSL--DDIEFAGRDITTNGLL---DNTMGIQYDTSNE  144 (501)
T ss_dssp             HTTCEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEET--TC------------------------------
T ss_pred             HcCCEEEecCccCCHHHHHHHHHhcCCCEEEEcccccccccccccc--ccceeeeeeccccccc---ccccccccccchh
Confidence            9999999999999999999999999999999998765433221110  1111110000000000   00000000 0001


Q ss_pred             HHHHcC-CCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHH
Q 010455          203 EFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ  281 (510)
Q Consensus       203 ~~~~~~-~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~  281 (510)
                      ...... ..........++++++++|||||||.||+|+++|+++.+.+......+     ++..+|++++.+|++|.+|+
T Consensus       145 ~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~g~  219 (501)
T 3ipl_A          145 TVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESL-----GFDRDTNWLSVLPIYHISGL  219 (501)
T ss_dssp             -----CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHT-----CCCTTCEEEECSCTTSHHHH
T ss_pred             hccccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhh-----CCCccCEEEEeCcHHHHHHH
Confidence            111101 001122345689999999999999999999999999999999888777     88899999999999999999


Q ss_pred             HHHHHHHhcCcEEEEeCC-CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhcccCC
Q 010455          282 IIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGM  360 (510)
Q Consensus       282 ~~~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (510)
                      ..++.+++.|+++++.+. ++..+++.++++++|+++++|+++..+++...                             
T Consensus       220 ~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-----------------------------  270 (501)
T 3ipl_A          220 SVLLRAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGL-----------------------------  270 (501)
T ss_dssp             HHHHHHHHHTCEEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTC-----------------------------
T ss_pred             HHHHHHHHcCceEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCC-----------------------------
Confidence            888889999999999875 99999999999999999999999999875210                             


Q ss_pred             CCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeeccccccccceecccCC-CCccCCccc
Q 010455          361 PQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLAD-VFNMIGTVG  439 (510)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~~~~~~~~-~~~~~~svG  439 (510)
                              ..           ..+||.+++||+++++++.+++.+ +++++++.||+||++..++..... .....+++|
T Consensus       271 --------~~-----------~~~lr~i~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G  330 (501)
T 3ipl_A          271 --------HE-----------PYNLQKILLGGAKLSATMIETALQ-YNLPIYNSFGMTETCSQFLTATPEMLHARPDTVG  330 (501)
T ss_dssp             --------CS-----------CTTCCEEEECSSCCCHHHHHHHHH-TTCCEEEEEEEGGGTEEEEEECHHHHHHCTTCCB
T ss_pred             --------CC-----------cCcccEEEEeCCCCCHHHHHHHHH-hCCCEeccccccccccceeecCccccccCCCCCC
Confidence                    00           017999999999999999999987 499999999999998755443322 223447899


Q ss_pred             cccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhhccCccccCCe-eeccCCccC
Q 010455          440 VPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGKN-PWQYTFKKL  509 (510)
Q Consensus       440 ~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDl-~~d~dG~~~  509 (510)
                      +|+++++++|+| ++       +++.|||+|+|++++.||+++++.+.+ |.+|||+|||+ ++|+||++.
T Consensus       331 ~p~~~~~~~i~d-~~-------~~~~GEl~v~g~~~~~gY~~~~~~t~~-~~~g~~~TGDl~~~~~~G~l~  392 (501)
T 3ipl_A          331 MPSANVDVKIKN-PN-------KEGHGELMIKGANVMNGYLYPTDLTGT-FENGYFNTGDIAEIDHEGYVM  392 (501)
T ss_dssp             EECTTCEEEEES-CC-------SSCCEEEEEESTTSCSCCSBSTTCCCS-EETTEEEEEEEEEECTTSCEE
T ss_pred             CCCCCcEEEEec-CC-------CCCccEEEEeccchhhhhCcChhhcch-hcCCceecCCEEEEcCCCeEE
Confidence            999999999999 54       236899999999999999999999887 88999999999 999999864

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}

Probab=100.00  E-value=7.8e-54  Score=488.86  Aligned_cols=377  Identities=17%  Similarity=0.234  Sum_probs=314.2

Q ss_pred             CCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHH
Q 010455           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (510)
Q Consensus        42 ~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA  121 (510)
                      ..++.++|+++++++|+++|+++.   +      +++||+||.++++++|++|++.|+++|++|+|+++|++++++++||
T Consensus       463 ~~~l~~~~~~~~~~~p~~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~la  533 (1304)
T 2vsq_A          463 TKPLTYWFKEAVNANPDAPALTYS---G------QTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILG  533 (1304)
T ss_dssp             CCCHHHHHHHHHHHCTTSEEEESS---S------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhCCCCeEEEEC---C------eeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHH
Confidence            478999999999999999999865   4      5799999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCceeeeH
Q 010455          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW  201 (510)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  201 (510)
                      |+++|++++||+|.++.+++.++++.++++++|++.+....+..     .......+.+++..                 
T Consensus       534 ilkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~-----~~~~~~~~~~~~~~-----------------  591 (1304)
T 2vsq_A          534 VLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAE-----LPYTGTTLFIDDQT-----------------  591 (1304)
T ss_dssp             HHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTT-----CCCCSEEEESSCGG-----------------
T ss_pred             HHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhc-----cCCCCcEEEecccc-----------------
Confidence            99999999999999999999999999999999998765443211     11122333332210                 


Q ss_pred             HHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHH
Q 010455          202 EEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ  281 (510)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~  281 (510)
                       . .. ...........++++++++|||||||.||||+++|+++.+. .+....+     .+.++|+++...|++|..+.
T Consensus       592 -~-~~-~~~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~-----~~~~~d~~l~~~~~~fd~~~  662 (1304)
T 2vsq_A          592 -R-FE-EQASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYM-----AFSDQDTFLSVSNYAFDAFT  662 (1304)
T ss_dssp             -G-GG-SCSSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSS-----CCCTTCEEEECSCTTSTHHH
T ss_pred             -c-cc-cccCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhc-----CCCCCCEEEEECCccHHHHH
Confidence             0 00 01111223456899999999999999999999999999876 4444444     78899999999999998888


Q ss_pred             HHHHHHHhcCcEEEEeCC----CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhcc
Q 010455          282 IIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMK  357 (510)
Q Consensus       282 ~~~l~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (510)
                      ..++.+|..|+++++.+.    ++..+++.++++++|+++++|++++.+.+..                           
T Consensus       663 ~~~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~---------------------------  715 (1304)
T 2vsq_A          663 FDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAG---------------------------  715 (1304)
T ss_dssp             HHHHHHHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHC---------------------------
T ss_pred             HHHHHHHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhc---------------------------
Confidence            788999999999999863    8999999999999999999999999886410                           


Q ss_pred             cCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcC-CCeeeeccccccccceecccCCC---Cc
Q 010455          358 KGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG-APLTQGYGLTESCSGCFTSLADV---FN  433 (510)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g-~~l~~~yG~tE~~~~~~~~~~~~---~~  433 (510)
                                   ...++        +||.+++||++++.++.+.+.+.++ +.++|.||+||++..++......   ..
T Consensus       716 -------------~~~~~--------~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~  774 (1304)
T 2vsq_A          716 -------------EDWMK--------GLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSI  774 (1304)
T ss_dssp             -------------SHHHH--------TCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCCSSC
T ss_pred             -------------hhcCC--------CccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCccccC
Confidence                         00122        8999999999999999998887774 78999999999998776544322   22


Q ss_pred             cCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhh-c------cCccccCCe-eeccC
Q 010455          434 MIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-V------DGWFHTGKN-PWQYT  505 (510)
Q Consensus       434 ~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~------~gw~~TGDl-~~d~d  505 (510)
                      ...++|+|++|++++|+| +++++++.|  +.|||+|+|+++++||+|+|+.|.++| .      ++||+|||+ ++++|
T Consensus       775 ~~~~iG~p~~~~~~~i~d-~~~~~~p~G--~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~d  851 (1304)
T 2vsq_A          775 SSLPIGKPISNASVYILN-EQSQLQPFG--AVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPD  851 (1304)
T ss_dssp             SSCCCBEECTTEEEEEEC-TTSCBCCTT--CCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECTT
T ss_pred             CCCCCceeeCCCEEEEEC-CCcCCCCCC--CceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEcCC
Confidence            336899999999999999 888888877  899999999999999999999999999 3      349999999 99999


Q ss_pred             CccC
Q 010455          506 FKKL  509 (510)
Q Consensus       506 G~~~  509 (510)
                      |.+.
T Consensus       852 G~l~  855 (1304)
T 2vsq_A          852 GTIE  855 (1304)
T ss_dssp             SCEE
T ss_pred             CeEE
Confidence            9764

>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}

Probab=100.00  E-value=3.8e-34  Score=282.31  Aligned_cols=209  Identities=16%  Similarity=0.156  Sum_probs=176.8

Q ss_pred             CCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHhcCcEEEEeC
Q 010455          219 KTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWR  298 (510)
Q Consensus       219 ~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~l~~l~~G~~~v~~~  298 (510)
                      .+++++|+|||||||.||||++||+++.+.+..+...+     +++++|++++.+|++|.+|+..++.+++.|+++++.+
T Consensus        36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~  110 (358)
T 4gs5_A           36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKAL-----SLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTE  110 (358)
T ss_dssp             HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEEC
T ss_pred             CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHh-----CCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecC
Confidence            47889999999999999999999999999999988888     8899999999999999999988888999999999876


Q ss_pred             CCHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhcccCCCCCCchhhHHHHHHHHHH
Q 010455          299 GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIR  378 (510)
Q Consensus       299 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (510)
                      . ....++.++++++|++.++|+++..+++...                                      ...++    
T Consensus       111 ~-~~~~~~~i~~~~~t~~~~~P~~l~~ll~~~~--------------------------------------~~~~l----  147 (358)
T 4gs5_A          111 P-TANPLAGLDHADFDFVAMVPMQLQSILENSA--------------------------------------TSGQV----  147 (358)
T ss_dssp             C-CSCTTTTCSSCCCSEEEECHHHHHHHHHCTT--------------------------------------TGGGG----
T ss_pred             c-cccHHHHHHHhCCeEEEcChHHHHHhhcccc--------------------------------------ccccC----
Confidence            4 2344677899999999999999999875210                                      01122    


Q ss_pred             HHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeeccccccccceecccCCCCccCCccccccCCeEEEEeecCCCCcC
Q 010455          379 EAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYD  458 (510)
Q Consensus       379 ~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~~~~~~~~~~~~~~svG~p~~g~~i~ivd~~~~~~~  458 (510)
                          ++||.+++||+++++++.+++++. |+++++.||+||++..++....+.... +++|.+.||+++.+.+       
T Consensus       148 ----~~lr~v~~gG~~l~~~~~~~~~~~-~~~~~~~YG~TEt~~~~~~~~~~~~~~-g~~~~~~pgv~~~~~~-------  214 (358)
T 4gs5_A          148 ----DRLGKVLLGGAPVNHALAMQISDL-AMPVYQSYGMTETVSHVALKALNGPEA-SELYVFLPGIQYGVDE-------  214 (358)
T ss_dssp             ----GGGCSEEECSSCCCHHHHHHHHTC-SSCEEEEEECGGGSSEEEEEECSSTTC-CSCEEECTTCEEEECT-------
T ss_pred             ----CcceEEEEcccCCCchheeccccc-CceEEeccccccccceeeccccccccc-ceeeccCCCeEEEecC-------
Confidence                289999999999999999999874 999999999999998877766554443 8899999999888744       


Q ss_pred             CCCCCCcceEEEecCCccccccCCchhhhhhhccCccccCCe-eeccCCccC
Q 010455          459 ALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGKN-PWQYTFKKL  509 (510)
Q Consensus       459 ~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDl-~~d~dG~~~  509 (510)
                            .|||+++|+.+               .+|||+|||+ ++|+||..+
T Consensus       215 ------~Gel~~~g~~~---------------~~g~~~TGDlg~~d~~g~~~  245 (358)
T 4gs5_A          215 ------RGCLHISGAVT---------------NGQTVQTNDLVEIHGNAFQW  245 (358)
T ss_dssp             ------TSEEEEESGGG---------------TTCCEEEEEEEEECSSEEEE
T ss_pred             ------cCceEEecccc---------------cCcceecCCccccccCceEE
Confidence                  59999998632               3789999999 999999543

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=99.98  E-value=1.2e-31  Score=272.52  Aligned_cols=229  Identities=13%  Similarity=0.045  Sum_probs=182.0

Q ss_pred             CCCC-CCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHH-HHHHHHhcCcE
Q 010455          216 PKKK-TNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQI-IETHCIHKGCS  293 (510)
Q Consensus       216 ~~~~-~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~-~~l~~l~~G~~  293 (510)
                      ...+ +++++++|||||||.||+|+++|+++.+.+..+...+..  .++.++|++++.+|+.|..+.. ..+.++..|++
T Consensus        81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~  158 (436)
T 3qov_A           81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYM--VGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCL  158 (436)
T ss_dssp             CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHH--TTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCE
T ss_pred             cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHH--cCCCCCCEEEECcccccchhHHHHHHHHHHcCCE
Confidence            3445 889999999999999999999999998877665443211  2678999999999987655554 57788999999


Q ss_pred             EEEeCC-CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhcccCCCCCCchhhHHHH
Q 010455          294 IGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSL  372 (510)
Q Consensus       294 ~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (510)
                      +++.+. ++..+++.++++++|+++++|+++..|++.........                                   
T Consensus       159 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~-----------------------------------  203 (436)
T 3qov_A          159 TVPAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDP-----------------------------------  203 (436)
T ss_dssp             EECCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCT-----------------------------------
T ss_pred             EEeCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCc-----------------------------------
Confidence            998764 99999999999999999999999999987543221100                                   


Q ss_pred             HHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeeccccccccceecccCCCCccCCccccccCCeEEEEeec
Q 010455          373 VFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESV  452 (510)
Q Consensus       373 ~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~~~~~~~~~~~~~~svG~p~~g~~i~ivd~  452 (510)
                      ++        ++||.+++||+++++++.+++++.+|+.+++.||+||+++.++......  . ..+|.|.+++.++|+|.
T Consensus       204 ~~--------~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~--~-~g~~~~~~~~~v~i~d~  272 (436)
T 3qov_A          204 RE--------TTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMTEMNGPGVAFECQE--Q-NGMHFWEDCYLVEIIDP  272 (436)
T ss_dssp             TS--------SSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEEGGGTEEEEEEECTT--C-SSEEECTTTEEEEEECT
T ss_pred             cc--------CCccEEEEeCCcCCHHHHHHHHHHhCccEEecCcchhhcCCeeEEecCC--C-CeeEEccCceEEEEEEC
Confidence            01        3899999999999999999999999999999999999965432222211  1 33677888999999995


Q ss_pred             CCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhhccCccccCCe-eeccCC
Q 010455          453 PEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGKN-PWQYTF  506 (510)
Q Consensus       453 ~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDl-~~d~dG  506 (510)
                      +++.+++.|  +.|||+|+|.            +.+.|.++||+|||+ ++|+||
T Consensus       273 ~~g~~~~~g--~~Gel~v~~~------------~~~~~~~~~y~TGDl~~~~~~g  313 (436)
T 3qov_A          273 ETGEPVPEG--EIGELVLTTL------------DREMMPLIRYRTRDLTRILPGK  313 (436)
T ss_dssp             TTCSBCSTT--CCEEEEEEES------------SCCSSCCCSEEEEEEECEECSC
T ss_pred             CCCCCCCCC--CceEEEEecc------------CcCCceEEEEEcCCEEEEcCCC
Confidence            677777766  8999999984            233456899999999 999998

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=99.97  E-value=4.6e-31  Score=268.30  Aligned_cols=231  Identities=16%  Similarity=0.078  Sum_probs=182.1

Q ss_pred             CCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecCh-HHHHHHHHHHHHHhcCcEE
Q 010455          216 PKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPL-AHIYDQIIETHCIHKGCSI  294 (510)
Q Consensus       216 ~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl-~h~~g~~~~l~~l~~G~~~  294 (510)
                      ...++++++++|||||||.||+|+++|+++...+..+...+..  .++..+|+++..+|+ +|..++...+.++..|+++
T Consensus        86 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~  163 (437)
T 2y27_A           86 AVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRA--AGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTV  163 (437)
T ss_dssp             SSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHH--TTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEE
T ss_pred             cCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHH--cCCCCCCEEEEcccccccccchHHHHHHHHcCCEE
Confidence            4467899999999999999999999999998877654432211  267899999999998 6788777788899999999


Q ss_pred             EEeCC-CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhcccCCCCCCchhhHHHHH
Q 010455          295 GFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLV  373 (510)
Q Consensus       295 v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (510)
                      ++.+. ++..+++.++++++|+++++|+++..|++........                                .   +
T Consensus       164 ~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~--------------------------------~---~  208 (437)
T 2y27_A          164 IPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLD--------------------------------P---V  208 (437)
T ss_dssp             ECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCC--------------------------------G---G
T ss_pred             EeCCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCC--------------------------------c---c
Confidence            87765 9999999999999999999999999987644321000                                0   0


Q ss_pred             HHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeeccccccccc-eecccCCCCccCCccccccCCeEEEEeec
Q 010455          374 FSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSG-CFTSLADVFNMIGTVGVPMTTVEARLESV  452 (510)
Q Consensus       374 ~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~-~~~~~~~~~~~~~svG~p~~g~~i~ivd~  452 (510)
                      +        ++||.+++||+++++++.+++++.+|+++++.||+||+++. +........   ..++.|.+++.++|+|.
T Consensus       209 ~--------~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~~~---~g~~~~~~~~~~~i~d~  277 (437)
T 2y27_A          209 Q--------SSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLSEVMGPGVASECVETK---DGPTIWEDHFYPEIIDP  277 (437)
T ss_dssp             G--------SSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEETTTTEEEEEECCTTTC---SSCEECTTTEEEEEECT
T ss_pred             c--------CCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCCchhhcCCeeEEecCCCC---CceeEccCceEEEEEcC
Confidence            1        38999999999999999999998889999999999998433 333222111   12566789999999994


Q ss_pred             CCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhhccCccccCCe-eecc-CCcc
Q 010455          453 PEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGKN-PWQY-TFKK  508 (510)
Q Consensus       453 ~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDl-~~d~-dG~~  508 (510)
                      +++.+++.|  +.|||+|+|.            +.+.|.++||+|||+ ++|+ ||+.
T Consensus       278 ~~g~~~~~g--~~Gel~v~~~------------t~~~~~~~~y~TGDl~~~~~~~G~~  321 (437)
T 2y27_A          278 ETGEVLPDG--ELGELVFTSL------------TKEALPIIRYRTRDLTRLLPGTART  321 (437)
T ss_dssp             TTCCBCCTT--CCEEEEEEES------------SCSSSCCCSEEEEEEECEECCSSSS
T ss_pred             CCCCCCCCC--CccEEEEecC------------CcCCchhheeecCCEEEEeCCCCCC
Confidence            457777765  8999999983            234456899999999 9999 6974

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=99.97  E-value=5.7e-31  Score=268.05  Aligned_cols=246  Identities=13%  Similarity=0.061  Sum_probs=187.2

Q ss_pred             eeHHHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecCh-HH
Q 010455          199 FSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPL-AH  277 (510)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl-~h  277 (510)
                      ...+++....  +.......++++++++|||||||.||+|.++|+++......+...+..  .++..+|+++..+|+ +|
T Consensus        73 ~~~~~l~~~~--p~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~--~~~~~~d~~l~~~~~~~~  148 (443)
T 2y4o_A           73 STKNDLRDNY--PFGLFAVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRA--AGGRPGDTLHNAFGYGLF  148 (443)
T ss_dssp             BCHHHHHTTT--TTTTCSSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHH--TTCCTTCEEEECSCCSSS
T ss_pred             CcHHHHHhhC--CCcccCCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHH--cCCCCCCEEEEeccCccc
Confidence            3455554432  112234467889999999999999999999999998876655442211  267899999999998 57


Q ss_pred             HHHHHHHHHHHhcCcEEEEeCC-CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhc
Q 010455          278 IYDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNM  356 (510)
Q Consensus       278 ~~g~~~~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (510)
                      ..++...+.++..|+++++.+. ++..+++.++++++|+++++|+++..|++........                    
T Consensus       149 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~--------------------  208 (443)
T 2y4o_A          149 TGGLGIHYGAERLGCMVVPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMD--------------------  208 (443)
T ss_dssp             HHHHHHHHHHHHHTCEEECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCC--------------------
T ss_pred             ccHHHHHHHHHHcCCEEEECCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCC--------------------
Confidence            7777777889999999988765 9999999999999999999999999987643321000                    


Q ss_pred             ccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeeccccccccc-eecccCCCCccC
Q 010455          357 KKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSG-CFTSLADVFNMI  435 (510)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~-~~~~~~~~~~~~  435 (510)
                                  .   ++        ++||.+++||+++++++.+++++.+|+++++.||+||+++. +........   
T Consensus       209 ------------~---~~--------~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~~~---  262 (443)
T 2y4o_A          209 ------------P---AE--------SSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLSEVMGPGVACECVETK---  262 (443)
T ss_dssp             ------------G---GG--------SSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEEEETTTTEEEEEEECTTTC---
T ss_pred             ------------c---cc--------CCceEEEECCCcCCHHHHHHHHHHhCcCEEeccCchhhcCCeEEeccCCCC---
Confidence                        0   01        38999999999999999999999889999999999998443 333222111   


Q ss_pred             CccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhhccCccccCCe-eeccC-Ccc
Q 010455          436 GTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGKN-PWQYT-FKK  508 (510)
Q Consensus       436 ~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDl-~~d~d-G~~  508 (510)
                      ..++.|.+++.++|+|.+++++++.|  +.|||+|+|.            +.+.|.++||+|||+ ++|+| |+.
T Consensus       263 ~g~~~~~~~~~~~i~d~~~g~~~~~G--~~Gel~v~~~------------t~~~~p~~~y~TGDl~~~~~~cG~~  323 (443)
T 2y4o_A          263 DGPVIWEDHFYPEIIDPVTGEVLPDG--SQGELVFTSL------------TKEAMPVIRYRTRDLTALLPPTARA  323 (443)
T ss_dssp             CSEEECTTTEEEEEECTTTCCBCCTT--CCEEEEEEES------------SCSSSCCSSEEEEEEECEECCSSSS
T ss_pred             CceEEccCCeEEEEEcCCCCCCCCCC--CceEEEEeCC------------CcccChhheeecCCEEEEcCCCCCC
Confidence            12566778999999994457777765  8999999983            233456889999999 99999 974

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*

Probab=99.96  E-value=1.2e-29  Score=251.97  Aligned_cols=229  Identities=14%  Similarity=0.120  Sum_probs=176.8

Q ss_pred             CCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecCh-HHHHHHHHHHHHHhcCcEEE
Q 010455          217 KKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPL-AHIYDQIIETHCIHKGCSIG  295 (510)
Q Consensus       217 ~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl-~h~~g~~~~l~~l~~G~~~v  295 (510)
                      ..++++++++|||||||.||+|.++|+++...+.++...+.  ..++..+|++++.+|+ +|..|+...+.++..|+.++
T Consensus        88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~--~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~  165 (369)
T 3hgu_A           88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQ--HRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFF  165 (369)
T ss_dssp             SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTT--TSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEE
T ss_pred             CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHH--hhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEE
Confidence            36788999999999999999999999999998885543321  1267899999999999 99999988777899999444


Q ss_pred             EeCCCHh-----------------------hHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhh
Q 010455          296 FWRGDVR-----------------------YLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYK  352 (510)
Q Consensus       296 ~~~~~~~-----------------------~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (510)
                      ....++.                       .+++.++++++|++.++|+++..|++.                       
T Consensus       166 ~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~-----------------------  222 (369)
T 3hgu_A          166 SIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKR-----------------------  222 (369)
T ss_dssp             CCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTC-----------------------
T ss_pred             CccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhh-----------------------
Confidence            3334666                       888899999999999999999998752                       


Q ss_pred             hhhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHH-Hhc-CCCeeeeccccccccceecccCC
Q 010455          353 LGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLR-VTS-GAPLTQGYGLTESCSGCFTSLAD  430 (510)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~-~~~-g~~l~~~yG~tE~~~~~~~~~~~  430 (510)
                                    +.....+++        +||.+++||+++++++.++++ +.| ++.+++.||+||+++++..... 
T Consensus       223 --------------~~~~~~~~~--------~lr~i~~gGe~l~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~-  279 (369)
T 3hgu_A          223 --------------PEVVLQMKQ--------SLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLI-  279 (369)
T ss_dssp             --------------HHHHHHHHH--------HCSEEEEESSCCCHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB-
T ss_pred             --------------hhhhccccC--------CeeEEEECCccCCHHHHHHHHHHhCCCcEEEcccCchhhhcceecccc-
Confidence                          222223344        899999999999999999999 888 8999999999998876532211 


Q ss_pred             CCccCCccccc------cCCeEEEEeecCCCCcCCCCCCCcceEEEecC---CccccccCCchhhhhhhccCccccCCe
Q 010455          431 VFNMIGTVGVP------MTTVEARLESVPEMGYDALSSVPRGEICLRGN---TLFSGYYKRPDLTEEVIVDGWFHTGKN  500 (510)
Q Consensus       431 ~~~~~~svG~p------~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~---~v~~gY~~~~~~~~~~~~~gw~~TGDl  500 (510)
                           .++|+|      +|+++++|+|.+++++++.|  +.|||+|++.   .++.+|...+........+||+.+|+.
T Consensus       280 -----~~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~G--~~GEl~vt~l~~~~~l~ry~tgD~~~~~~~~~g~~~d~~~  351 (369)
T 3hgu_A          280 -----TSESQQVIYDSFSPFITYDVVDSITAQTVEYG--ERGNVIVTHLSPWAFYPRVAERDTAIRLPGVSGFAGDRLA  351 (369)
T ss_dssp             -----CTTCSSCEEECCTTTEEEEEECTTTCSBCCTT--CEEEEEEEEEETTEEEEEEEEEEEEEEECCSTTCSSCEEE
T ss_pred             -----ccCCCcccccCCCCCeEEEEECCCCCcCCCCC--CceEEEEEEcCcccccccccCCceEEEecCCCCCcCcccc
Confidence                 248999      99999999993388877766  9999999973   336667665554444446777777643

>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*

Probab=96.09  E-value=0.037  Score=56.55  Aligned_cols=32  Identities=22%  Similarity=0.272  Sum_probs=26.4

Q ss_pred             CCCCCeEEEEecCCCC-CCCceEEeecHHHHHH
Q 010455          217 KKKTNISTIMYTSGTT-GEPKGVVLTNQAIVAE  248 (510)
Q Consensus       217 ~~~~~~a~i~~TSGtT-G~pK~v~~sh~~l~~~  248 (510)
                      ..++.+.++.-||||| |.+|-+.+|...+-..
T Consensus        90 L~~~pi~~F~~SSGTT~g~~K~IP~T~e~l~~~  122 (581)
T 4eql_A           90 ISARTITGFLLSSGTSGGAQKMMPWNNKYLDNL  122 (581)
T ss_dssp             TCSSCCCEEEEEEEEETTEEEEEEECHHHHHHH
T ss_pred             cCCCCCCeEEeCCCCCCCCccccccCHHHHHHH
Confidence            3456677899999999 7799999999987654

>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}

Probab=94.62  E-value=0.39  Score=49.21  Aligned_cols=32  Identities=25%  Similarity=0.281  Sum_probs=26.8

Q ss_pred             CCCCCeEEEEecCCCC-CCCceEEeecHHHHHH
Q 010455          217 KKKTNISTIMYTSGTT-GEPKGVVLTNQAIVAE  248 (510)
Q Consensus       217 ~~~~~~a~i~~TSGtT-G~pK~v~~sh~~l~~~  248 (510)
                      ..++.+..+.-||||| |.||.+.+|...+-..
T Consensus        96 l~~~~i~~f~~SSGTT~gk~K~IP~t~~~l~~~  128 (609)
T 4b2g_A           96 LSAHPISEFLTSSGTSAGERKLMPTIQEELDRR  128 (609)
T ss_dssp             SCSSCCCEEEEEEEEETTEEEEEEECTTHHHHH
T ss_pred             cCCCCCCeEEeCCCCCCCCceeeecCHHHHHHH
Confidence            3566778899999999 7899999999987663

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=91.99  E-value=1.8  Score=42.68  Aligned_cols=126  Identities=16%  Similarity=0.046  Sum_probs=90.0

Q ss_pred             CCCCcceeeeeccCCCCCCe--EEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCc--hhHHHHHHHHHhcCCeEEE
Q 010455           56 IPNNQMLGGRKVSDGKVGPY--VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNC--PEWIIAMEACNSQAITYVP  131 (510)
Q Consensus        56 ~p~~~a~~~~~~~~~~~~~~--~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns--~~~~~~~lA~~~~G~~~v~  131 (510)
                      .++.++.+...  .|..|.+  ..+|.+.+...+..++..+...|+.++|++...++.+  ...+...++++..|+.+++
T Consensus        90 ~~~~~~~i~~T--SGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~  167 (443)
T 2y4o_A           90 PREQVVRVHAS--SGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVP  167 (443)
T ss_dssp             CGGGCCEEEEE--CCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEEC
T ss_pred             ChhheEEEEEC--CCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEE
Confidence            34555543331  5555544  3579999998888888888888999999999988863  3445567888899999888


Q ss_pred             ecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCcc-----CCCCccEEEEecCCC
Q 010455          132 LYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPR-----CCLYLKTIVSFANVS  184 (510)
Q Consensus       132 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~~~  184 (510)
                      +++. ..+.+...++..++.+++........+.+...+     ....++.++.-++.-
T Consensus       168 ~~~~-~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l  224 (443)
T 2y4o_A          168 MSGG-QTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPW  224 (443)
T ss_dssp             CCSC-CHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCC
T ss_pred             CCCC-CHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcC
Confidence            7764 788888999999999999887766655443211     124667777665543

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=91.97  E-value=1  Score=44.43  Aligned_cols=124  Identities=11%  Similarity=-0.023  Sum_probs=90.2

Q ss_pred             CCcceeeeeccCCCCCCe--EEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCc--hhHHHHHHHHHhcCCeEEEec
Q 010455           58 NNQMLGGRKVSDGKVGPY--VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNC--PEWIIAMEACNSQAITYVPLY  133 (510)
Q Consensus        58 ~~~a~~~~~~~~~~~~~~--~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns--~~~~~~~lA~~~~G~~~v~l~  133 (510)
                      +.++++..  ..|..|.+  ..+|.+.+...+..++..+...|+.++|++...++-+  ...+..+++++..|+.+++.+
T Consensus        86 ~~~a~i~~--TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~  163 (436)
T 3qov_A           86 RDGVRIHS--SSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAA  163 (436)
T ss_dssp             HHEEEEEE--CSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCC
T ss_pred             CCeEEEEE--CCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCC
Confidence            44554433  14444433  4679999999999998888889999999999988753  444556788899999988876


Q ss_pred             CCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCcc-----CCCCccEEEEecCCC
Q 010455          134 DTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPR-----CCLYLKTIVSFANVS  184 (510)
Q Consensus       134 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~~~  184 (510)
                      +. .++.+...++..++.+++........+.+....     .+..++.++.-++.-
T Consensus       164 ~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l  218 (436)
T 3qov_A          164 AG-NSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPH  218 (436)
T ss_dssp             SC-CHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCC
T ss_pred             CC-CHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcC
Confidence            54 678888999999999999888766665543211     135677777766553

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=90.68  E-value=1.4  Score=43.54  Aligned_cols=125  Identities=17%  Similarity=0.085  Sum_probs=89.1

Q ss_pred             CCCCcceeeeeccCCCCCCe--EEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCc--hhHHHHHHHHHhcCCeEEE
Q 010455           56 IPNNQMLGGRKVSDGKVGPY--VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNC--PEWIIAMEACNSQAITYVP  131 (510)
Q Consensus        56 ~p~~~a~~~~~~~~~~~~~~--~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns--~~~~~~~lA~~~~G~~~v~  131 (510)
                      .++.++.+..  ..|..|.+  ..+|++.+...+..++..+...|+.++|++...++..  ...+...++++..|+.+++
T Consensus        88 ~~~~~~~i~~--TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~  165 (437)
T 2y27_A           88 PQDRISRIHA--SSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIP  165 (437)
T ss_dssp             CGGGCCEEEE--CCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEEC
T ss_pred             ChhHeEEEEE--CCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEe
Confidence            3456664433  14444533  4679999998888888888888999999999988853  3445567888999999987


Q ss_pred             ecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCcc-----CCCCccEEEEecCC
Q 010455          132 LYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPR-----CCLYLKTIVSFANV  183 (510)
Q Consensus       132 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~~  183 (510)
                      ++.. +.+.+...++..++.+++........+.+...+     ....++.++.-+..
T Consensus       166 ~~~~-~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~  221 (437)
T 2y27_A          166 FGGG-QTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEP  221 (437)
T ss_dssp             CCSC-CHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSC
T ss_pred             CCCC-CHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCcc
Confidence            7654 788899999999999999887766655443211     12456666665554

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=86.94  E-value=9.8  Score=37.98  Aligned_cols=122  Identities=12%  Similarity=0.023  Sum_probs=86.5

Q ss_pred             CCCCcceeeeeccCCCCCCe--EEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCch-hHHHHHHHHHhcCCeEEEe
Q 010455           56 IPNNQMLGGRKVSDGKVGPY--VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCP-EWIIAMEACNSQAITYVPL  132 (510)
Q Consensus        56 ~p~~~a~~~~~~~~~~~~~~--~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~-~~~~~~lA~~~~G~~~v~l  132 (510)
                      .|+.+|++...  .|..|.+  ..+|++.+...+..+..   ..++.++|++...+|-.- ..+..+++++..|+.++..
T Consensus       161 ~~~d~a~i~~T--SGTTG~PKgv~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~  235 (501)
T 3ipl_A          161 NLDDIASIMFT--SGTTGPQKAVPQTFRNHYASAIGCKE---SLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIV  235 (501)
T ss_dssp             CTTSEEEEEEC--CTTTSCCCEEEEEHHHHHHHHHHHHH---HTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEC
T ss_pred             CCCCeEEEEEC--CCCCCCCcEEEEeHHHHHHHHHHHHH---hhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeC
Confidence            46777765541  4444433  46799998877766554   358899999999888643 2344567888899988877


Q ss_pred             cCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCC
Q 010455          133 YDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANV  183 (510)
Q Consensus       133 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  183 (510)
                      +. .+++.+...++..++..++........+.+........++.++.-++.
T Consensus       236 ~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~lr~i~~gG~~  285 (501)
T 3ipl_A          236 DK-FNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEPYNLQKILLGGAK  285 (501)
T ss_dssp             SS-CCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSCTTCCEEEECSSC
T ss_pred             CC-CCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCcCcccEEEEeCCC
Confidence            64 678899999999999999998887776665544333466776665554

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A

Probab=82.39  E-value=21  Score=36.04  Aligned_cols=123  Identities=7%  Similarity=-0.126  Sum_probs=84.8

Q ss_pred             CCCCcceeeeeccCCCCCCe--EEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhH--HH-HHHHHHhcCCeEE
Q 010455           56 IPNNQMLGGRKVSDGKVGPY--VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEW--II-AMEACNSQAITYV  130 (510)
Q Consensus        56 ~p~~~a~~~~~~~~~~~~~~--~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~--~~-~~lA~~~~G~~~v  130 (510)
                      .|+.+|++...  .|..|.+  ..+|++.+...+......   .++.++|++...+|-+-.+  .. .+++.+..|+..+
T Consensus       180 ~~~d~a~i~~T--SGTTG~PKgV~~th~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v  254 (539)
T 1mdb_A          180 KSSDVAFLQLS--GGSTGLSKLIPRTHDDYIYSLKRSVEV---CWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVV  254 (539)
T ss_dssp             CTTSEEEEEEC--CCSSSSCCEEEEEHHHHHHHHHHHHHH---HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEE
T ss_pred             CcCceEEEEeC--CCcCCCCcEEEEehHHHHHHHHHHHHh---hCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEE
Confidence            46677765541  3444432  468999988777665543   3788999998888865333  22 4788899999888


Q ss_pred             EecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcC---ccCCCCccEEEEecCCC
Q 010455          131 PLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCL---PRCCLYLKTIVSFANVS  184 (510)
Q Consensus       131 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~  184 (510)
                      ..+ ...++.+...++..++.+++........+.+..   ...+..++.++.-+..-
T Consensus       255 ~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~~l  310 (539)
T 1mdb_A          255 LSP-SPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKF  310 (539)
T ss_dssp             ECS-SSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCC
T ss_pred             ECC-CCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCCCC
Confidence            765 467888999999999999998877666554332   23446677777666543

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*

Probab=82.32  E-value=5.7  Score=37.88  Aligned_cols=105  Identities=10%  Similarity=-0.031  Sum_probs=69.7

Q ss_pred             CCCCcceeeeeccCCCCCCe--EEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCc--hhHHHHHHHHHhcCCeEEE
Q 010455           56 IPNNQMLGGRKVSDGKVGPY--VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNC--PEWIIAMEACNSQAITYVP  131 (510)
Q Consensus        56 ~p~~~a~~~~~~~~~~~~~~--~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns--~~~~~~~lA~~~~G~~~v~  131 (510)
                      .++.++.+...  .|..|.+  ..+|.+.+...+..++..+...|+.++|++..+++-.  .--+...++++..|+.+++
T Consensus        89 ~~~~~a~i~~T--SGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~  166 (369)
T 3hgu_A           89 PADSHPQVYES--GGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFS  166 (369)
T ss_dssp             CTTCCCEEEEE--CC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEEC
T ss_pred             CccccEEEEEC--CCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEEC
Confidence            34555654431  4555544  3579999988888777777778999999999998863  2234445556889995555


Q ss_pred             ecCCCCHH-----------------------HHHHHHHhcCccEEEEcCCChhhHh
Q 010455          132 LYDTLGAN-----------------------AVEFIINHAEVSIAFVQENKIPSIL  164 (510)
Q Consensus       132 l~~~~~~~-----------------------~l~~~l~~~~~~~vi~~~~~~~~~~  164 (510)
                      ..  ..+.                       .+...++..++.+++........+.
T Consensus       167 ~~--~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~  220 (369)
T 3hgu_A          167 ID--IDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELL  220 (369)
T ss_dssp             CC--CCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHT
T ss_pred             cc--CChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHH
Confidence            33  3344                       6666888999999998776655543

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*

Probab=81.27  E-value=10  Score=38.54  Aligned_cols=122  Identities=11%  Similarity=-0.010  Sum_probs=82.5

Q ss_pred             CCcceeeeeccCCCCCC--eEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhH--HHHHHHHHhcCCeEEEec
Q 010455           58 NNQMLGGRKVSDGKVGP--YVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEW--IIAMEACNSQAITYVPLY  133 (510)
Q Consensus        58 ~~~a~~~~~~~~~~~~~--~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~--~~~~lA~~~~G~~~v~l~  133 (510)
                      +.+|++...  .|..|.  -..+|++.+...+......+...++.++|++...+|-.-.+  ...+++.+ .|+..+.++
T Consensus       192 ~d~a~i~~T--SGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~  268 (548)
T 2d1s_A          192 EQVALIMNS--SGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT  268 (548)
T ss_dssp             TCEEEEECC--SSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC
T ss_pred             CCEEEEEeC--CCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC
Confidence            666765441  344443  24689999887766655443335888999998888865332  33456777 999888775


Q ss_pred             CCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCc---cCCCCccEEEEecCC
Q 010455          134 DTLGANAVEFIINHAEVSIAFVQENKIPSILSCLP---RCCLYLKTIVSFANV  183 (510)
Q Consensus       134 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~  183 (510)
                       ...++.+...++..++.+++........+.+...   ..+..++.++.-+..
T Consensus       269 -~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~  320 (548)
T 2d1s_A          269 -KFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAP  320 (548)
T ss_dssp             -CCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCTTCCEEEECSSC
T ss_pred             -CCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccccccccceeEEEEcCcc
Confidence             4678899999999999999998877666654321   133566666665544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	510
d1pg4a_	643	e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en	2e-54
d1v25a_	534	e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0	5e-48
d1ry2a_	640	e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast	2e-47
d1lcia_	541	e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali	3e-41
d1amua_	514	e.23.1.1 (A:) Phenylalanine activating domain of g	1e-29
d3cw9a1	503	e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc	9e-27
d1mdba_	536	e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B	2e-24

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

 Score =  191 bits (487), Expect = 2e-54
 Identities = 61/448 (13%), Positives = 131/448 (29%), Gaps = 73/448 (16%)

Query: 73  GPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPL 132
                ++Y+E++    RF + +   G+  GD   IY    PE  +AM AC      +  +
Sbjct: 99  SQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVI 158

Query: 133 YDTLGANAVEFIINHAEVSIAFVQE------NKIPSILSCLPRCCLYLKTIVSFANVSSS 186
           +      AV   I  +   +    +        IP   +          T V    V   
Sbjct: 159 FGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKR 218

Query: 187 QKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIV 246
              + +        W + ++  + + +       +   I+YTSG+TG+PKGV+ T    +
Sbjct: 219 TGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYL 278

Query: 247 AEVL-SVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETH-CIHKGCSIGFWRG----- 299
                +   +F          D Y+    +  +       +  +  G +   + G     
Sbjct: 279 VYAATTFKYVFDYH-----PGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWP 333

Query: 300 DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKG 359
               + + + + +  +    P     +                                 
Sbjct: 334 TPARMCQVVDKHQVNILYTAPTAIRALM-------------------------------- 361

Query: 360 MPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHV-EEFLRVT--SGAPLTQGYG 416
               +    ++    S +R         + S   P+     E + +       P+   + 
Sbjct: 362 ---AEGDKAIEGTDRSSLR--------ILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWW 410

Query: 417 LTESCSGCFTSLADVFNM-IGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGN-- 473
            TE+     T L     +  G+   P   V+  L  V   G+    +   G + +  +  
Sbjct: 411 QTETGGFMITPLPGAIELKAGSATRPFFGVQPAL--VDNEGHPQEGATE-GNLVITDSWP 467

Query: 474 TLFSGYYKRPDLTEEVIV---DGWFHTG 498
                 +   +  E+         + +G
Sbjct: 468 GQARTLFGDHERFEQTYFSTFKNMYFSG 495

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

 Score =  171 bits (435), Expect = 5e-48
 Identities = 91/466 (19%), Positives = 149/466 (31%), Gaps = 82/466 (17%)

Query: 46  WQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRC 105
           W F   +A      ++     VS    G     TY EVY  A R    +R+ GV  GDR 
Sbjct: 14  WDFLERAAALFGRKEV-----VSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRV 68

Query: 106 GIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILS 165
              G N    + A  A              L    + +I+NHAE  +     N +P + +
Sbjct: 69  ATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEA 128

Query: 166 CLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTI 225
                      +V                  +   +  + +    + +     +     +
Sbjct: 129 IRGELKTVQHFVVMDEK--------------APEGYLAYEEALGEEADPVRVPERAACGM 174

Query: 226 MYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIET 285
            YT+GTTG PKGVV +++A+V   L+   +        SE+D     +P+ H+    +  
Sbjct: 175 AYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTA---LSEKDVVLPVVPMFHVNAWCLPY 231

Query: 286 HCIHKGCSIGF--WRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKK 343
                G        R D   L+E       T  +GVP V+  +                 
Sbjct: 232 AATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLAL----------------- 274

Query: 344 LFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFL 403
                                         + +        L+ ++ G +  P  +    
Sbjct: 275 ----------------------------ADYLESTGHRLKTLRRLVVGGSAAPRSLIARF 306

Query: 404 RVTSGAPLTQGYGLTESCSGCFT----------SLADVFNMIGTVGVPMTTVEARLESVP 453
               G  + QGYGLTE+                S  +   +    G+P+  V  R+    
Sbjct: 307 ERM-GVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD-E 364

Query: 454 EMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV-DGWFHTG 498
           E           GE+ L+G  +  GYY   + T   +  DG+F TG
Sbjct: 365 EGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTG 410

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  172 bits (436), Expect = 2e-47
 Identities = 72/443 (16%), Positives = 138/443 (31%), Gaps = 70/443 (15%)

Query: 78  LTYQEVYDAAIRFGSAMR-SRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTL 136
           +TY+E+ +   +    +  S GV  GD   +Y    PE II + A +     +  ++   
Sbjct: 91  ITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGF 150

Query: 137 GANAVEFIINHAEVSIAFVQEN-----KIPSILSCLPRCCLYLKTIVSFANVSSSQKKEA 191
            +N++   IN  +  +    +      K+      +         +        +     
Sbjct: 151 SSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSV 210

Query: 192 EELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLS 251
                    W    +         P    +   ++YTSG+TG PKGV  +    +   L 
Sbjct: 211 AFHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALL 270

Query: 252 VDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETH-CIHKGCSIGFWRG-----DVRYLM 305
             +    T     +ED +F+   +  I       +  +  GC+   + G     +     
Sbjct: 271 TMRYTFDT----HQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYW 326

Query: 306 EDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKA 365
           + I E K T F   P     +                                   +   
Sbjct: 327 DIIDEHKVTQFYVAPTALRLL-----------------------------------KRAG 351

Query: 366 APLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG---APLTQGYGLTESCS 422
              +++     +R         + S   P+   V E+     G    P+   Y  TES S
Sbjct: 352 DSYIENHSLKSLR--------CLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGS 403

Query: 423 GCFTSLADVFNMI--GTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGN--TLFSG 478
              T LA     +  G+   P   ++A +   P  G +  +S   G + ++    +    
Sbjct: 404 HLVTPLAGGVTPMKPGSASFPFFGIDAVVLD-PNTGEELNTSHAEGVLAVKAAWPSFART 462

Query: 479 YYKRPDLTEEVIV---DGWFHTG 498
            +K  D   +  +    G++ TG
Sbjct: 463 IWKNHDRYLDTYLNPYPGYYFTG 485

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

 Score =  153 bits (387), Expect = 3e-41
 Identities = 78/428 (18%), Positives = 145/428 (33%), Gaps = 64/428 (14%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           +TY E ++ ++R   AM+  G+N   R  +   N  ++ + +       +   P  D   
Sbjct: 48  ITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYN 107

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
              +   +N ++ ++ FV +  +  IL+   +  +  K I+  +       +        
Sbjct: 108 ERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTF--- 164

Query: 198 CFSWEEFLQLGTLDCELPPK---KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQ 254
                  L  G  + +  P+   +   I+ IM +SG+TG PKGV L ++           
Sbjct: 165 ---VTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARD 221

Query: 255 MFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPT 314
                  +                    +  + I     +  +R +    +  +Q+ K  
Sbjct: 222 PIFGNQIIPDTAILSVVPFHHGFGMFTTL-GYLICGFRVVLMYRFEEELFLRSLQDYKIQ 280

Query: 315 MFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVF 374
               VP ++                                          + L+D    
Sbjct: 281 SALLVPTLFSFFA-------------------------------------KSTLIDKYDL 303

Query: 375 SKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNM 434
           S + E   G       GA       E   +      + QGYGLTE  +       +  + 
Sbjct: 304 SNLHEIASG-------GAPLSKEVGEAVAKRFHLPGIRQGYGLTE-TTSAILITPEGDDK 355

Query: 435 IGTVGVPMTTVEARLESVPEMGYDALSSVP---RGEICLRGNTLFSGYYKRPDLTEEVIV 491
            G VG  +   EA++     +  D   ++    RGE+C+RG  + SGY   P+ T  +I 
Sbjct: 356 PGAVGKVVPFFEAKV-----VDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALID 410

Query: 492 -DGWFHTG 498
            DGW H+G
Sbjct: 411 KDGWLHSG 418

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

 Score =  119 bits (299), Expect = 1e-29
 Identities = 79/460 (17%), Positives = 150/460 (32%), Gaps = 97/460 (21%)

Query: 47  QFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCG 106
           Q F +   + PNN  +    V + +      LTY E+   A +       +G+      G
Sbjct: 27  QLFEEQVSKRPNNVAI----VCENEQ-----LTYHELNVKANQLARIFIEKGIGKDTLVG 77

Query: 107 IYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSC 166
           I      +  I + A       YVP+        +++I++ ++  +   Q++ +  I   
Sbjct: 78  IMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLI--- 134

Query: 167 LPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIM 226
                                    +  G      E+ +++        P K T+++ ++
Sbjct: 135 ----------------------HNIQFNGQVEIFEEDTIKIREGTNLHVPSKSTDLAYVI 172

Query: 227 YTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETH 286
           YTSGTTG PKG +L ++ I        ++F       +E+D    F  ++          
Sbjct: 173 YTSGTTGNPKGTMLEHKGIS-----NLKVFFENSLNVTEKDRIGQFASISFDASVWEMFM 227

Query: 287 CIHKGCSI----GFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSK 342
            +  G S+         D     + I + + T+ +  P                      
Sbjct: 228 ALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVV------------------ 269

Query: 343 KLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEF 402
                                +    + +L+                +G+A  P  V ++
Sbjct: 270 -----------------HLDPERILSIQTLIT---------------AGSATSPSLVNKW 297

Query: 403 LRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSS 462
                       YG TE+     T +A    +  +V +       ++  V E        
Sbjct: 298 KE---KVTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVG 354

Query: 463 VPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGKNPW 502
              GE+C+ G  L  GY+KRP+LT +  VD  F  G+  +
Sbjct: 355 EA-GELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLY 393

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

 Score =  110 bits (276), Expect = 9e-27
 Identities = 73/460 (15%), Positives = 133/460 (28%), Gaps = 81/460 (17%)

Query: 42  LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNP 101
           +++  +    +A R P++  L     + G       LT+ E+        + + + G+ P
Sbjct: 1   MQTVNEMLRRAATRAPDHCAL--AVPARGL-----RLTHAELRARVEAVAARLHADGLRP 53

Query: 102 GDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP 161
             R  +   N  + +IA+ A +        L   L +  +  +I   E++ A +   +  
Sbjct: 54  QQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGR-- 111

Query: 162 SILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTN 221
            +   + +     + I     V   +                         E P ++   
Sbjct: 112 QVADAIFQSGSGARIIFLGDLVRDGEPYSYGP-----------------PIEDPQREPAQ 154

Query: 222 ISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ 281
            + I YTSGTTG PK  ++  +A  + VL +              +     +PL H+   
Sbjct: 155 PAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVG---LRHGRHNVVLGLMPLYHVVGF 211

Query: 282 IIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALS 341
                        G +     +   D  +L                              
Sbjct: 212 FAVLVAALALD--GTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLD------------- 256

Query: 342 KKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEE 401
                                      L +             L+ +    A +P  V E
Sbjct: 257 --------------------------ALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLE 290

Query: 402 FLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALS 461
            +           YG TE+ +  +          GT   P    E R   +  +G     
Sbjct: 291 TVHQHLPGEKVNIYGTTEAMNSLYM----RQPKTGTEMAPGFFSEVR---IVRIGGGVDE 343

Query: 462 SVPRGE----ICLRGNTLFSGYYKRPDLTEEVIVDGWFHT 497
            V  GE    I    ++ F GY  +P  T E + DGW+ T
Sbjct: 344 IVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRT 383

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

 Score =  104 bits (259), Expect = 2e-24
 Identities = 59/461 (12%), Positives = 123/461 (26%), Gaps = 71/461 (15%)

Query: 46  WQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRC 105
                D A +  +   +                +Y+E+   A R  +  +  G+   DR 
Sbjct: 28  GDLLRDRAAKYGDRIAI----TCGNTH-----WSYRELDTRADRLAAGFQKLGIQQKDRV 78

Query: 106 GIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILS 165
            +   N  E+   + A        V    +  ++ + +    AE +   + +        
Sbjct: 79  VVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYR 138

Query: 166 CLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTI 225
            L R        +           +   +      +     L T   +LP  K ++++ +
Sbjct: 139 SLARQVQSKLPTL-----------KNIIVAGEAEEFLPLEDLHTEPVKLPEVKSSDVAFL 187

Query: 226 MYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIET 285
             + G+TG  K +  T+   +     + +   V     S        +   +        
Sbjct: 188 QLSGGSTGLSKLIPRTHDDYIYS---LKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVL 244

Query: 286 HCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKL 344
             ++ G  +              I+  K T+ + VP +                      
Sbjct: 245 GVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMD---------------- 288

Query: 345 FEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLR 404
                                         +  R      LQ +  G A         ++
Sbjct: 289 -----------------------------AASSRRDDLSSLQVLQVGGAKFSAEAARRVK 319

Query: 405 VTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVP 464
              G  L Q +G+ E              ++ T G PM+  +       +   D +    
Sbjct: 320 AVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESR-VWDDHDRD-VKPGE 377

Query: 465 RGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGKNPWQYT 505
            G +  RG     GYYK  +       +  F+   +  + T
Sbjct: 378 TGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLT 418

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	510
d1pg4a_	643	Acetyl-CoA synthetase {Salmonella enterica [TaxId:	100.0
d1v25a_	534	Long chain fatty acid-CoA ligase TT0168 {Thermus t	100.0
d1ry2a_	640	Acetyl-CoA synthetase {Baker's yeast (Saccharomyce	100.0
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	100.0
d1amua_	514	Phenylalanine activating domain of gramicidin synt	100.0
d1mdba_	536	Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil	100.0
d3cw9a1	503	4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId	100.0

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=100.00  E-value=8.5e-59  Score=491.03  Aligned_cols=408  Identities=14%  Similarity=0.181  Sum_probs=329.7

Q ss_pred             HHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHHHh
Q 010455           45 PWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNS  124 (510)
Q Consensus        45 l~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA~~~  124 (510)
                      ...+|+++++.+||++|+++.   .++.+..+++||+||.++++++|++|+++|+++||+|+++++|++++++++|||++
T Consensus        74 ~~n~ldrh~~~~~d~~Ali~~---~~~~~~~~~~TY~eL~~~v~~~A~~L~~~Gv~~Gd~V~i~~~n~~e~iv~~lA~~~  150 (643)
T d1pg4a_          74 AANCLDRHLQENGDRTAIIWE---GDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACAR  150 (643)
T ss_dssp             HHHHTGGGHHHHTTSEEEEEE---CSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCEEEEEE---ecCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecccchHHHHHHHHHHH
Confidence            456788889999999999987   55556668999999999999999999999999999999999999999999999999


Q ss_pred             cCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCCh---------hhHhhcC-ccCCCCccEEEEecCCChhhhhHhhhc
Q 010455          125 QAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI---------PSILSCL-PRCCLYLKTIVSFANVSSSQKKEAEEL  194 (510)
Q Consensus       125 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~  194 (510)
                      +|++++|+++.++++++..++++++++++|+++...         ..+...+ ......+..++++........    ..
T Consensus       151 ~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~----~~  226 (643)
T d1pg4a_         151 IGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDID----WQ  226 (643)
T ss_dssp             HTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCC----CC
T ss_pred             hCeEEEecCCCCCHHHHHHHHHhcCCCEEEEcchhhhhccccchhhhHHHHHhccccccceEEEEeccCCcccc----cc
Confidence            999999999999999999999999999999987532         1222221 123356677777665533110    00


Q ss_pred             CceeeeHHHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhh-hhhhhhhccccCCCCcEEEEec
Q 010455          195 GVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLS-VDQMFVVTGKVCSEEDTYFSFL  273 (510)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~-~~~~~~~~~~~~~~~d~~~~~~  273 (510)
                      ......+................+++++++|+|||||||.||||+++|++++..... +...+     ++.++|++++.+
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~-----~~~~~d~~~~~~  301 (643)
T d1pg4a_         227 EGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVF-----DYHPGDIYWCTA  301 (643)
T ss_dssp             BTTEEEHHHHHTTSCSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHT-----TCCTTCEEEECS
T ss_pred             cccchhhhhhhcccCcccCCCCCCCCCeEEEEeCCCcccCCCEEEEccHHHHHHHHHHHHHhh-----CCCCCCEEEEeC
Confidence            112333444544443344445567899999999999999999999999997765544 34444     788999999999


Q ss_pred             ChHHHHHHHH-HHHHHhcCcEEEEeCC-----CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHH
Q 010455          274 PLAHIYDQII-ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEF  347 (510)
Q Consensus       274 pl~h~~g~~~-~l~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~  347 (510)
                      |++|++++.. ++.+|+.|+++++.++     ++..+++.++++++|+++++|+++..|++..                 
T Consensus       302 p~~~~~g~~~~l~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~-----------------  364 (643)
T d1pg4a_         302 DVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEG-----------------  364 (643)
T ss_dssp             CTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTG-----------------
T ss_pred             ChHHHHHHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHHCCcEEEehHHHHHHHHhCc-----------------
Confidence            9999999875 6678999999999763     7899999999999999999999999986521                 


Q ss_pred             HHHhhhhhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcC---CCeeeeccccccccce
Q 010455          348 AYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG---APLTQGYGLTESCSGC  424 (510)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g---~~l~~~yG~tE~~~~~  424 (510)
                                        ....+..++        ++||.+++||+++++++.+++.+.+|   +.+++.||+||++.++
T Consensus       365 ------------------~~~~~~~dl--------~sLr~i~~~G~pl~~~~~~~~~~~~g~~~~~i~~~yG~TE~g~~~  418 (643)
T d1pg4a_         365 ------------------DKAIEGTDR--------SSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFM  418 (643)
T ss_dssp             ------------------GGGTTTCCC--------TTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCS
T ss_pred             ------------------chhccccCC--------CceEEEEEEeCCCCHHHHHHHHHHhCCCCceEEEeechhhccceE
Confidence                              111222223        38999999999999999999998884   7799999999999877


Q ss_pred             ecccCCC-CccCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEec--CCccccccCCchhhhhhh---ccCccccC
Q 010455          425 FTSLADV-FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRG--NTLFSGYYKRPDLTEEVI---VDGWFHTG  498 (510)
Q Consensus       425 ~~~~~~~-~~~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g--~~v~~gY~~~~~~~~~~~---~~gw~~TG  498 (510)
                      +...+.. ...++++|+|++|++++|+| ++|++++.+  +.|||+|+|  |+++.|||++++.+.+.+   .+|||+||
T Consensus       419 ~~~~~~~~~~~~gs~G~p~~g~~v~ivd-~~g~~~~~g--~~Gel~v~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~TG  495 (643)
T d1pg4a_         419 ITPLPGAIELKAGSATRPFFGVQPALVD-NEGHPQEGA--TEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSG  495 (643)
T ss_dssp             BCCCTTTCCBCTTCCBSBCTTCCEEEEC-TTCCBCCSS--EEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEE
T ss_pred             EecCCCccCCCCCccccccCCCEEEEEC-CCCCCCCCC--ceEEEEEecCCCcccccccCChhhchhhhcccCCCeEEcC
Confidence            6654433 34458999999999999999 888887766  899999999  578999999999887776   58999999


Q ss_pred             Ce-eeccCCccCC
Q 010455          499 KN-PWQYTFKKLM  510 (510)
Q Consensus       499 Dl-~~d~dG~~~~  510 (510)
                      |+ ++|+||++.+
T Consensus       496 Dl~~~d~dG~l~i  508 (643)
T d1pg4a_         496 DGARRDEDGYYWI  508 (643)
T ss_dssp             EEEEECTTSCEEE
T ss_pred             CEEEECCCceEEE
Confidence            99 9999998753

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=7.4e-57  Score=468.43  Aligned_cols=400  Identities=23%  Similarity=0.312  Sum_probs=331.4

Q ss_pred             CCCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHH
Q 010455           41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME  120 (510)
Q Consensus        41 ~~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~l  120 (510)
                      ...||+++|+++++++||++|+++.   +  ++..+++||+||.++++++|++|.+.|+++||+|+++++|++++++++|
T Consensus         9 ~~~~l~~~l~~~a~~~pd~~av~~~---~--~g~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l   83 (534)
T d1v25a_           9 EELNLWDFLERAAALFGRKEVVSRL---H--TGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYF   83 (534)
T ss_dssp             CCCCTHHHHHHHHHHSTTCEEEEEC---T--TSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHcCCCeEEEEe---c--CCceEEEcHHHHHHHHHHHHHHHHHCCcCCCCEEEEEeCCCHHHHHHHH
Confidence            3558999999999999999999876   3  3445789999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCceeee
Q 010455          121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFS  200 (510)
Q Consensus       121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  200 (510)
                      ||+++|++++|++|.++.+++.++++.++++.++++............. ...+...+.........          ...
T Consensus        84 A~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----------~~~  152 (534)
T d1v25a_          84 AVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGE-LKTVQHFVVMDEKAPEG----------YLA  152 (534)
T ss_dssp             HHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGG-CSSCCEEEESSSCCCTT----------CEE
T ss_pred             HHHHhCcEEEecCCCCCHHHHHHHHHhhccccccccchhhhhHHHHhhc-ccccceeEEeecccccc----------ccc
Confidence            9999999999999999999999999999999999999888776554433 34555555544432210          111


Q ss_pred             HHHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHH
Q 010455          201 WEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD  280 (510)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g  280 (510)
                      ....   ...........++++++++|||||||.||+|+++|.+++..+.......   .......|++++.+|++|.++
T Consensus       153 ~~~~---~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~---~~~~~~~d~~~~~~p~~~~~~  226 (534)
T d1v25a_         153 YEEA---LGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVD---GTALSEKDVVLPVVPMFHVNA  226 (534)
T ss_dssp             HHHH---CCSCCCCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTT---TTCCCTTCEEEECSCTTSHHH
T ss_pred             cccc---ccccccccccccCCcEEEEEecCCCCCccccccccchhhhhhhhhhhhc---ccccccccccccccchhhhcc
Confidence            1111   1222334456788999999999999999999999999987665533322   226788999999999999999


Q ss_pred             HHHHHHHHhcCcEEEEeCC--CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhccc
Q 010455          281 QIIETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKK  358 (510)
Q Consensus       281 ~~~~l~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (510)
                      +...+..+..|+++++...  ++..+...+.++++|++.++|.++..++........                       
T Consensus       227 ~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~-----------------------  283 (534)
T d1v25a_         227 WCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGH-----------------------  283 (534)
T ss_dssp             HTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTC-----------------------
T ss_pred             ccccceeeeecceeeeccccccccccchhhhhccccccccCchhhhhhhhhhccccc-----------------------
Confidence            9988888888888777654  899999999999999999999999998764332211                       


Q ss_pred             CCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeeccccccccceecccCCCC------
Q 010455          359 GMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVF------  432 (510)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~~~~~~~~~~------  432 (510)
                                            ..++||.+++||++++.+..+++++. +..+++.||+||++.++........      
T Consensus       284 ----------------------~~~~lr~~~~gG~~~~~~~~~~~~~~-~~~i~~~yG~te~~~~~~~~~~~~~~~~~~~  340 (534)
T d1v25a_         284 ----------------------RLKTLRRLVVGGSAAPRSLIARFERM-GVEVRQGYGLTETSPVVVQNFVKSHLESLSE  340 (534)
T ss_dssp             ----------------------CCSSCCEEEECSSCCCHHHHHHHHHT-TCEEEEEEECGGGSSEEEECCCCGGGTTSCH
T ss_pred             ----------------------cccceeEEEEecCCCCHHHHHHHHHh-CCeeeeeccccccccceeecccCccccccCc
Confidence                                  11489999999999999999998864 9999999999999998776543321      


Q ss_pred             ----ccCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhh-ccCccccCCe-eeccCC
Q 010455          433 ----NMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGKN-PWQYTF  506 (510)
Q Consensus       433 ----~~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~gw~~TGDl-~~d~dG  506 (510)
                          ..++++|+|+||++++|+| +++++++.+.++.|||+|+|++++.||+++++.+.+.| .||||+|||+ ++|+||
T Consensus       341 ~~~~~~~~~~G~p~~g~~~~i~d-~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~t~~~~~~dg~~~TGDlg~~~~~G  419 (534)
T d1v25a_         341 EEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEG  419 (534)
T ss_dssp             HHHHHHHTSCBEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECTTC
T ss_pred             cccccccccceeccCCcEEEEEC-CCCCCCCCCCCeeEEEEEcCCcccceecCChhhhhhhcccCCCCccCceeEECCCc
Confidence                2247899999999999999 99999998878899999999999999999999999998 8999999999 999999


Q ss_pred             ccC
Q 010455          507 KKL  509 (510)
Q Consensus       507 ~~~  509 (510)
                      ++.
T Consensus       420 ~l~  422 (534)
T d1v25a_         420 YVE  422 (534)
T ss_dssp             CEE
T ss_pred             cEE
Confidence            764

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.6e-56  Score=475.57  Aligned_cols=412  Identities=19%  Similarity=0.243  Sum_probs=324.3

Q ss_pred             CCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHH-hCCCCCCCEEEEEcCCchhHHHHHHH
Q 010455           43 ESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMR-SRGVNPGDRCGIYGSNCPEWIIAMEA  121 (510)
Q Consensus        43 ~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~-~~gv~~gd~Vai~~~ns~~~~~~~lA  121 (510)
                      |...++|+++++++||++|+++.   +.+.+..+++||+||.++++++|++|+ ++|+++||+|+++++|++++++++||
T Consensus        59 N~~~n~ldr~a~~~pd~~Ali~~---~~~~g~~~~~Ty~eL~~~v~~~A~~L~~~~Gv~~Gd~V~i~~~n~~e~~~~~lA  135 (640)
T d1ry2a_          59 NACYNCVDRHALKTPNKKAIIFE---GDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLA  135 (640)
T ss_dssp             CHHHHHTHHHHTTCTTSEEEEEE---CSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHH
T ss_pred             hHHHHHHHHHHhhCCCCEEEEEE---ecCCCCeeEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence            34588899999999999999987   555566689999999999999999997 67999999999999999999999999


Q ss_pred             HHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChh--------hHhhcCccCCCCccEEEEecCCChhhhhHhhh
Q 010455          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP--------SILSCLPRCCLYLKTIVSFANVSSSQKKEAEE  193 (510)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~--------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  193 (510)
                      |+++|++++|+++.++++++.++++++++++++++.....        ............+..............   ..
T Consensus       136 ~~~~Gav~vpi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~  212 (640)
T d1ry2a_         136 ISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSV---AF  212 (640)
T ss_dssp             HHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSC---CC
T ss_pred             hccCceEeecCCCCCCHHHHHHHHHhhhccccccchhhhhccchhhhHHHHHhhhhhhcccceeeeecccccccc---cc
Confidence            9999999999999999999999999999999999875321        111222222234444444433221100   00


Q ss_pred             cCceeeeHHHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhh-hhhhccccCCCCcEEEEe
Q 010455          194 LGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQ-MFVVTGKVCSEEDTYFSF  272 (510)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~-~~~~~~~~~~~~d~~~~~  272 (510)
                      ......................+..++++++|+|||||||.||||+++|++++.+...... .+     .+.++|++++.
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~h~~~~~~~~~~~~~~~-----~~~~~d~~l~~  287 (640)
T d1ry2a_         213 HAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTF-----DTHQEDVFFTA  287 (640)
T ss_dssp             CSSSEEEHHHHHTTSCSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHS-----CCCSSCEEEEC
T ss_pred             cccccccccccccccccccccCCcccccCCEEEECCCCCCCCcceeeccccHHHHHHHHHHhhc-----CCCcccceeec
Confidence            0111222333333223333445567889999999999999999999999998887655443 33     78899999999


Q ss_pred             cChHHHHHHHH-HHHHHhcCcEEEEeCC-----CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHH
Q 010455          273 LPLAHIYDQII-ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFE  346 (510)
Q Consensus       273 ~pl~h~~g~~~-~l~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~  346 (510)
                      +|++|+.|+.. ++.+|+.|+++++.+.     ++..+++.++++++|++.++|++++.|.+..                
T Consensus       288 ~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~----------------  351 (640)
T d1ry2a_         288 GDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAG----------------  351 (640)
T ss_dssp             SCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSC----------------
T ss_pred             cchhhhhhHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHhCccEEEcChHHHHHHHhcc----------------
Confidence            99999999875 7779999999888764     7899999999999999999999998875310                


Q ss_pred             HHHHhhhhhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcC---CCeeeeccccccccc
Q 010455          347 FAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG---APLTQGYGLTESCSG  423 (510)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g---~~l~~~yG~tE~~~~  423 (510)
                                         ....+..++        ++||.+++||+++++++.+++.+.+|   ..+++.||+||++..
T Consensus       352 -------------------~~~~~~~~l--------~sLr~v~~gG~~l~~~~~~~~~~~~g~~~~~i~~~yg~te~~~~  404 (640)
T d1ry2a_         352 -------------------DSYIENHSL--------KSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSH  404 (640)
T ss_dssp             -------------------TTSSSSCCC--------TTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSC
T ss_pred             -------------------ccccccCCC--------CceEEEEEecccCcHHHHHHHHHhcCCCcceEEeeecccccccc
Confidence                               111122223        38999999999999999999999885   469999999999887


Q ss_pred             eecccCCC--CccCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEec--CCccccccCCchhhhhhh---ccCccc
Q 010455          424 CFTSLADV--FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRG--NTLFSGYYKRPDLTEEVI---VDGWFH  496 (510)
Q Consensus       424 ~~~~~~~~--~~~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g--~~v~~gY~~~~~~~~~~~---~~gw~~  496 (510)
                      +.......  ...++++|+|+||++++|+| ++++....+.++.|||+++|  |+++.|||++++.+.++|   .+|||+
T Consensus       405 ~~~~~~~~~~~~~~gs~G~p~~g~~~~i~d-~~~~~~~~~~~~~Gel~i~~~~p~~~~gy~~~~e~t~~~~~~~~~gw~~  483 (640)
T d1ry2a_         405 LVTPLAGGVTPMKPGSASFPFFGIDAVVLD-PNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYF  483 (640)
T ss_dssp             SEECCTTTCCCCCTTCCCEECTTCCEEEEC-SSSTTCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEE
T ss_pred             cccccCCCcCCCCCcccccccCCceEEEEe-CCCCcccCCCCceEEEEEEecCCCcccccccCHHHHHhhhccCCCCeEE
Confidence            66554433  33458999999999999999 77766655555789999998  689999999999998887   459999


Q ss_pred             cCCe-eeccCCccC
Q 010455          497 TGKN-PWQYTFKKL  509 (510)
Q Consensus       497 TGDl-~~d~dG~~~  509 (510)
                      |||+ ++|+||++.
T Consensus       484 TGDlg~~d~dG~l~  497 (640)
T d1ry2a_         484 TGDGAAKDKDGYIW  497 (640)
T ss_dssp             EEEEEEECTTCCEE
T ss_pred             cCCceeECCCCCEE
Confidence            9999 999999875

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=100.00  E-value=5.8e-56  Score=462.23  Aligned_cols=404  Identities=22%  Similarity=0.336  Sum_probs=322.0

Q ss_pred             CCCCCCHHHHHHHHHhhC---CCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhH
Q 010455           39 PAGLESPWQFFCDSAKRI---PNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEW  115 (510)
Q Consensus        39 ~~~~~sl~~~l~~~a~~~---p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~  115 (510)
                      |-+..++.++|.+.++++   |+.+|+.+.   +..    +++||+||.++++++|.+|+++|+++||+|+++++|++++
T Consensus        13 p~~~~t~~~~l~~~~~~~~~~P~~~a~~d~---~~~----~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~ns~e~   85 (541)
T d1lcia_          13 PLEDGTAGEQLHKAMKRYALVPGTIAFTDA---HIE----VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQF   85 (541)
T ss_dssp             CCCSSCHHHHHHHHHHHHHTSTTCEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCSST
T ss_pred             CCCCCCHHHHHHHHHHhhCCCCCeEEEEeC---CCC----eEeeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHH
Confidence            344579999999999888   555555543   222    5799999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcC
Q 010455          116 IIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELG  195 (510)
Q Consensus       116 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  195 (510)
                      ++++|||+++|++++|+++.++.+++.++|+.++++++|++++..+.+.+.... ++..+.+++++.....         
T Consensus        86 ~v~~lA~~~~G~i~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---------  155 (541)
T d1lcia_          86 FMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKK-LPIIQKIIIMDSKTDY---------  155 (541)
T ss_dssp             HHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHH-CTTCCEEEETTCSSCB---------
T ss_pred             HHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhccceEEeeeccccccchhcccc-ccccceeeeecCCccc---------
Confidence            999999999999999999999999999999999999999999888776665433 3666777776554321         


Q ss_pred             ceeeeHHHHHHcC-------CCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcE
Q 010455          196 VSCFSWEEFLQLG-------TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDT  268 (510)
Q Consensus       196 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~  268 (510)
                      ..+..+.......       ....+.....++++++++|||||||.||+|+++|++++.........+.  .......++
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~--~~~~~~~~~  233 (541)
T d1lcia_         156 QGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIF--GNQIIPDTA  233 (541)
T ss_dssp             TTBEEHHHHHHHHSCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTT--SCCCCTTCE
T ss_pred             cccchhhhhhhhhccccccccccCccccCCCCceEEEEeeccccccccccccccchhhhhhhhhhhhcc--ccccccccc
Confidence            1123333333221       1112233446788999999999999999999999999887776554431  125678999


Q ss_pred             EEEecChHHHHHHHHHHHHHhcCcEEEEeCC-CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHH
Q 010455          269 YFSFLPLAHIYDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEF  347 (510)
Q Consensus       269 ~~~~~pl~h~~g~~~~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~  347 (510)
                      +++++|++|..++...+..+..++.++.... +....+..+..+++|.++.+|.++..++...                 
T Consensus       234 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~-----------------  296 (541)
T d1lcia_         234 ILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKST-----------------  296 (541)
T ss_dssp             EEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEECCHHHHHHHHHCS-----------------
T ss_pred             ccccccccccccccccccccccccccccccccccchhHHHHhhhhccccccCccccccccccc-----------------
Confidence            9999999999999888888888888777665 8999999999999999999999999887521                 


Q ss_pred             HHHhhhhhcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCC-Ceeeeccccccccceec
Q 010455          348 AYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGA-PLTQGYGLTESCSGCFT  426 (510)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~-~l~~~yG~tE~~~~~~~  426 (510)
                                          .....++        +++|.+++||++++....+++.+.++. .+++.||+||++..++.
T Consensus       297 --------------------~~~~~~~--------~~l~~v~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~  348 (541)
T d1lcia_         297 --------------------LIDKYDL--------SNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILI  348 (541)
T ss_dssp             --------------------CGGGSCC--------TTCCEEECTTCCCCHHHHHHHHHHTTCSCCBCEECCGGGSSCSEE
T ss_pred             --------------------ccccccc--------ccceEEEecccccccccccccccccCCceeeecCCccccCceEEe
Confidence                                1111112        389999999999999999999998875 58999999999988877


Q ss_pred             ccCCCCccCCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhh-ccCccccCCe-eecc
Q 010455          427 SLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGKN-PWQY  504 (510)
Q Consensus       427 ~~~~~~~~~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~gw~~TGDl-~~d~  504 (510)
                      ....... ++++|+|+||++++|+|.++++.++.|  +.|||+|+|++++.||+++++.+...+ .+|||+|||+ ++|+
T Consensus       349 ~~~~~~~-~~svG~p~~~~~~~i~d~d~~~~~~~g--~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~TGDl~~~~~  425 (541)
T d1lcia_         349 TPEGDDK-PGAVGKVVPFFEAKVVDLDTGKTLGVN--QRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDE  425 (541)
T ss_dssp             CCCC----CCCCBEECTTCEEEEECTTTCCBCCTT--CCEEEEEESTTSCSEETTBHHHHHHHBCTTSCEEEEEEEEECT
T ss_pred             cCcccCC-CCccccccCCCEEEEEECCCCcCCCCC--CeEEEEEccCccCCeeCCChhhhhhcccCCccccCCCeeEEcC
Confidence            6555443 489999999999999995566666665  899999999999999999999888888 7899999999 9999


Q ss_pred             CCccC
Q 010455          505 TFKKL  509 (510)
Q Consensus       505 dG~~~  509 (510)
                      ||+++
T Consensus       426 ~G~~~  430 (541)
T d1lcia_         426 DEHFF  430 (541)
T ss_dssp             TCCEE
T ss_pred             CeEEE
Confidence            99865

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

Probab=100.00  E-value=2.8e-52  Score=431.60  Aligned_cols=374  Identities=19%  Similarity=0.277  Sum_probs=310.2

Q ss_pred             CCCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHH
Q 010455           41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME  120 (510)
Q Consensus        41 ~~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~l  120 (510)
                      ...||.++|+++|+++||++|+++.   +      +++||+||.++++++|.+|+++|+++||+|+++++|++++++++|
T Consensus        21 ~~~tl~~l~~~~a~~~Pd~~Al~~~---~------~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~l   91 (514)
T d1amua_          21 RDKTIHQLFEEQVSKRPNNVAIVCE---N------EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGIL   91 (514)
T ss_dssp             TTCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHhCCCCeEEEEC---C------eeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHH
Confidence            4689999999999999999999875   3      689999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCceeee
Q 010455          121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFS  200 (510)
Q Consensus       121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  200 (510)
                      ||+++|++++|+++.++.+++.++++.++++++|++....+.+.......     .........                
T Consensus        92 a~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~-----~~~~~~~~~----------------  150 (514)
T d1amua_          92 AVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQFNG-----QVEIFEEDT----------------  150 (514)
T ss_dssp             HHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCCCS-----EEEECCCST----------------
T ss_pred             HHHHhCcEEEEeCCCCCHHHHHHHHhccCCcEEEEehhhhhhhhhhcccc-----ccccccccc----------------
Confidence            99999999999999999999999999999999999988777664433211     111111110                


Q ss_pred             HHHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHH
Q 010455          201 WEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD  280 (510)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g  280 (510)
                          ...........+..++++++|+|||||||.||+|.+||.++...+......+     .....|++++.+|++|..+
T Consensus       151 ----~~~~~~~~~~~p~~~~d~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~  221 (514)
T d1amua_         151 ----IKIREGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSL-----NVTEKDRIGQFASISFDAS  221 (514)
T ss_dssp             ----TTTSCCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTS-----CCCTTCEEEECSCTTSTHH
T ss_pred             ----ccccccccCCCCCCcccceEEEEccCCCCCcccccccccccccccccccccc-----cccccccccceeccccccc
Confidence                0011112223445688999999999999999999999999999999988777     8899999999999999999


Q ss_pred             HHHHHHHHhcCcEEEEeCC----CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhc
Q 010455          281 QIIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNM  356 (510)
Q Consensus       281 ~~~~l~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (510)
                      +..++.++..|+++++...    +....++.+..+.++.+..+|..+....                             
T Consensus       222 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------  272 (514)
T d1amua_         222 VWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLD-----------------------------  272 (514)
T ss_dssp             HHHHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSC-----------------------------
T ss_pred             cccccccccccccccccccccccchhhhhhhhhhhhcccccceeeeccccc-----------------------------
Confidence            9988899999999998763    6788889999999999999887654311                             


Q ss_pred             ccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeeccccccccceecccCCCC--cc
Q 010455          357 KKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVF--NM  434 (510)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~~~~~~~~~~--~~  434 (510)
                                    ..++        .+++.+++||+++++++.+++.+  ++.+++.||+||++.+++.......  ..
T Consensus       273 --------------~~~~--------~~l~~~~~~G~~~~~~~~~~~~~--~~~~~~~yG~tE~~~~~~~~~~~~~~~~~  328 (514)
T d1amua_         273 --------------PERI--------LSIQTLITAGSATSPSLVNKWKE--KVTYINAYGPTETTICATTWVATKETIGH  328 (514)
T ss_dssp             --------------TTTC--------CSCSEEEEESSCCCHHHHHHHTT--TSEEEEEECCGGGSSCSEEEECCSSCCCS
T ss_pred             --------------cccc--------ccccEEEEecccCCHHHhhhhcc--ceeEEEeeccccCceeeeeccccccccCc
Confidence                          0011        38999999999999999888765  7889999999999998776554432  23


Q ss_pred             CCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhhc-------cCccccCCe-eeccCC
Q 010455          435 IGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV-------DGWFHTGKN-PWQYTF  506 (510)
Q Consensus       435 ~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~-------~gw~~TGDl-~~d~dG  506 (510)
                      .++.|.+.++..+.+.| +++..++.|  +.|||+|+||.++.||++++..+.+.|.       +|||+|||+ ++|+||
T Consensus       329 ~~~~~~~~~~~~v~~~d-~~~~~~~~g--~~GEl~v~~~~~~~gY~~~~~~~~~~~~~~~~~~~~~~~~TGD~g~~d~~G  405 (514)
T d1amua_         329 SVPIGAPIQNTQIYIVD-ENLQLKSVG--EAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDG  405 (514)
T ss_dssp             SCCCBEECTTEEEEEEC-TTSCBCCTT--CEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTS
T ss_pred             ccccccceeeeeEeeec-ccceecCCC--CeeEEEEccCcccccccccccccceeeEeccccCCCceEEECCEEEECCCC
Confidence            36788999999999999 888888877  8999999999999999999999988872       689999999 999999


Q ss_pred             ccC
Q 010455          507 KKL  509 (510)
Q Consensus       507 ~~~  509 (510)
                      ++.
T Consensus       406 ~l~  408 (514)
T d1amua_         406 NIE  408 (514)
T ss_dssp             CEE
T ss_pred             cEE
Confidence            875

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=7.8e-51  Score=422.77  Aligned_cols=392  Identities=17%  Similarity=0.169  Sum_probs=315.2

Q ss_pred             CCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHH
Q 010455           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (510)
Q Consensus        42 ~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA  121 (510)
                      ..||.++|+++|+++||++|+++.   +      +++||+||.++++++|++|++.|+++||+|+++++|++++++++||
T Consensus        24 ~~tl~~~l~~~a~~~pd~~Al~~~---~------~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA   94 (536)
T d1mdba_          24 GETFGDLLRDRAAKYGDRIAITCG---N------THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFA   94 (536)
T ss_dssp             SCCHHHHHHHHHHHHTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHCCCCeEEEEC---C------EeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHHH
Confidence            369999999999999999999875   4      6899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHh----hcCccCCCCccEEEEecCCChhhhhHhhhcCce
Q 010455          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSIL----SCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS  197 (510)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  197 (510)
                      |+++|++++|++|..+.+++.++++.++++.+++++.......    .........+...+.......            
T Consensus        95 ~~~~G~i~vpl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  162 (536)
T d1mdba_          95 LFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEE------------  162 (536)
T ss_dssp             HHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCTT------------
T ss_pred             HHHhCcEEEecCCCCCHHHHHHHHHhhccceEeccchhhhhhhhhhhhhhhhccccccceeeeecccc------------
Confidence            9999999999999999999999999999999999864332111    111111122222222222111            


Q ss_pred             eeeHHHHHHcCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHH
Q 010455          198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAH  277 (510)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h  277 (510)
                      ...++++   ...........++++++|+|||||||.||+|++||+++...+......+     .+..+|++++..|++|
T Consensus       163 ~~~~~~~---~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~~~~~  234 (536)
T d1mdba_         163 FLPLEDL---HTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-----WLDHSTVYLAALPMAH  234 (536)
T ss_dssp             SEEGGGC---CCCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECSCTTS
T ss_pred             ccchhhc---ccCCcCCCccCccchHHhhhcccccccceeccccccccccccccccccc-----cccccccccccccccc
Confidence            1122221   1222333456789999999999999999999999999999999988888     8899999999999999


Q ss_pred             HHHHHH--HHHHHhcCcEEEEeCC-CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhh
Q 010455          278 IYDQII--ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLG  354 (510)
Q Consensus       278 ~~g~~~--~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (510)
                      .+++..  ....+..|.+++..+. ++..+++.+++++++.+..+|..+..+..........                  
T Consensus       235 ~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------  296 (536)
T d1mdba_         235 NYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDD------------------  296 (536)
T ss_dssp             HHHHHSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCC------------------
T ss_pred             ccceeeccccccccccccccccCCCCHHHHHHHHhhhccccccccchhhhhhhhhccccccc------------------
Confidence            999763  4445555677776654 9999999999999999999999998876533221111                  


Q ss_pred             hcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeeccccccccceecccCCCCcc
Q 010455          355 NMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNM  434 (510)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~~~~~~~~~~~~  434 (510)
                                                 .++++.+++||+++++...+++.+.+|......|+.+|.+..+..........
T Consensus       297 ---------------------------~~~~~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (536)
T d1mdba_         297 ---------------------------LSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEII  349 (536)
T ss_dssp             ---------------------------CTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCTTSCHHHH
T ss_pred             ---------------------------cCcceeEEEeccccccccccchhhccCceeeeccccccccccccccccccccc
Confidence                                       13899999999999999999999999999999999999877666554444444


Q ss_pred             CCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEecCCccccccCCchhhhhhh-ccCccccCCe-eeccCCccC
Q 010455          435 IGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGKN-PWQYTFKKL  509 (510)
Q Consensus       435 ~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~gw~~TGDl-~~d~dG~~~  509 (510)
                      .+++|.|+++....+++.+++++++.+  +.|||+++|+.++.||+++++.+...+ .+|||+|||+ ++|+||+++
T Consensus       350 ~~~~g~p~~~~~~~~v~~~~g~~~~~~--~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~tGD~~~~~~dG~l~  424 (536)
T d1mdba_         350 VNTQGKPMSPYDESRVWDDHDRDVKPG--ETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIV  424 (536)
T ss_dssp             HHCCCEESSTTCEEEEECTTSCBCCTT--CCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEE
T ss_pred             cCCcccCCCCcceEEEEcCCCCeeccc--ccceeecCCCccccccccccccccccccccCccccCccccccCCCcee
Confidence            578999986554444443777777666  899999999999999999999988888 7899999999 999999875

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

Probab=100.00  E-value=8.4e-47  Score=388.41  Aligned_cols=387  Identities=19%  Similarity=0.224  Sum_probs=308.2

Q ss_pred             CCCHHHHHHHHHhhCCCCcceeeeeccCCCCCCeEEEeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHH
Q 010455           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (510)
Q Consensus        42 ~~sl~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~v~~lA~~L~~~gv~~gd~Vai~~~ns~~~~~~~lA  121 (510)
                      ++|+.++|+++|+++||++|+++.   ++.    +++||+||.++++++|++|++.|+++||+|+++++|++++++++||
T Consensus         1 ~~ti~~~l~~~a~~~pd~~al~~~---~~~----~~~Ty~el~~~~~~~a~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA   73 (503)
T d3cw9a1           1 MQTVNEMLRRAATRAPDHCALAVP---ARG----LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILA   73 (503)
T ss_dssp             CCCHHHHHHHHHHHSTTSEEEEEG---GGT----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhCCCCeEEEEC---CCC----cEEeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHH
Confidence            479999999999999999999886   433    6899999999999999999999999999999999999999999999


Q ss_pred             HHhcCCeEEEecCCCCHHHHHHHHHhcCccEEEEcCCChhhHhhcCccCCCCccEEEEecCCChhhhhHhhhcCceeeeH
Q 010455          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW  201 (510)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  201 (510)
                      |+++|++++|+++.++++++.++++.++++++|++........  .... .....++.+                     
T Consensus        74 ~~~~G~v~vpi~~~~~~~~i~~~l~~~~~~~~i~~~~~~~~~~--~~~~-~~~~~~i~~---------------------  129 (503)
T d3cw9a1          74 LHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADA--IFQS-GSGARIIFL---------------------  129 (503)
T ss_dssp             HHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEESSCHHHHHH--HHHT-TCCCEEEEH---------------------
T ss_pred             HHHhCcEEEEeCCCCCHHHHHHHHHhcCCcEEEeecchHHHHH--Hhhh-ccccccccc---------------------
Confidence            9999999999999999999999999999999999876432211  1111 122223322                     


Q ss_pred             HHHHHcC-----CCCCCCCCCCCCCeEEEEecCCCCCCCceEEeecHHHHHHHhhhhhhhhhccccCCCCcEEEEecChH
Q 010455          202 EEFLQLG-----TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLA  276 (510)
Q Consensus       202 ~~~~~~~-----~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~  276 (510)
                      .++....     ..........++++++++|||||||.||+|.++|+++...+......+   .......+++++.+|++
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~p~~  206 (503)
T d3cw9a1         130 GDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV---GLRHGRHNVVLGLMPLY  206 (503)
T ss_dssp             HHHEETTEECCCSCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEGGGHHHHHHHHHHTS---CCCSSTTCEEEECSCTT
T ss_pred             hhhhhhhcccccCCccccccchhhhhhhhcccccccccccccccccchhhhhhhhccccc---cccccccccccccCccc
Confidence            2222111     112223445788999999999999999999999999999998876654   22456778999999998


Q ss_pred             HHHHHHH-HHHHHhcCcEEEEeCC-CHhhHHHHHhhhcCcEEEeccHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhh
Q 010455          277 HIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLG  354 (510)
Q Consensus       277 h~~g~~~-~l~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (510)
                      |..+... .+.+...++.+++.+. ++..+...+..++++++..+|..+..+..........                  
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------  268 (503)
T d3cw9a1         207 HVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSS------------------  268 (503)
T ss_dssp             SHHHHHTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHHHTCTT------------------
T ss_pred             cccccccccccccccccccccccccChHHhhhhhhhceeecccccccccccccccccccccc------------------
Confidence            8888764 5666677777776654 9999999999999999999999998876533322111                  


Q ss_pred             hcccCCCCCCchhhHHHHHHHHHHHHhCCcEeEEEEecCCCCHHHHHHHHHhcCCCeeeeccccccccceecccCCCCcc
Q 010455          355 NMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNM  434 (510)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gg~~~~~~~~~~~~~~~g~~l~~~yG~tE~~~~~~~~~~~~~~~  434 (510)
                                       .        ..++||.+++||++++++...++...++..+.+.||++|++..+..........
T Consensus       269 -----------------~--------~~~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~~yg~~e~~~~~~~~~~~~~~~  323 (503)
T d3cw9a1         269 -----------------L--------KLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPKTGTE  323 (503)
T ss_dssp             -----------------C--------CCTTCCEEEECSSCCCHHHHHHHHHHCCSEEEEEEEETTTEEEEEEESCSSSSE
T ss_pred             -----------------c--------cccceEEEEeccccccccccccccccccccccccccccccceeeeecccccccc
Confidence                             0        113899999999999999999999999999999999999988777655544333


Q ss_pred             CCccccccCCeEEEEeecCCCCcCCCCCCCcceEEEec-CCccccccCCchhhhhhhccCccccCCe-eeccCCccC
Q 010455          435 IGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRG-NTLFSGYYKRPDLTEEVIVDGWFHTGKN-PWQYTFKKL  509 (510)
Q Consensus       435 ~~svG~p~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g-~~v~~gY~~~~~~~~~~~~~gw~~TGDl-~~d~dG~~~  509 (510)
                       .+.+.+.+.....+.+ ..+..++.|  +.|++.+.+ +....+|++++..+.+.|.||||+|||+ ++|+||+..
T Consensus       324 -~~~~~~~~~~~~~~~~-~~~~~~~~g--~~g~~~~~~~~~~~~~~~~~~~~t~~~~~~g~~~TgD~g~~~~dG~l~  396 (503)
T d3cw9a1         324 -MAPGFFSEVRIVRIGG-GVDEIVANG--EEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVR  396 (503)
T ss_dssp             -EBCCTTCCEEEECTTS-CTTCBCCTT--CCEEEEEECCTTSCCCBTTCHHHHHHHEETTEEEEEEEEEECTTSCEE
T ss_pred             -ccccccccceeeeeec-ccCcccCCC--ccccccccccccccccccCChhhhHHHhcCCceecccccccccCCeEE
Confidence             4555566666666666 666666655  889887775 5678889999999999999999999999 999999865