Citrus Sinensis ID: 010498

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------51

MLALCRLDRVDRLLKFTSTYVNSRPLDYSQGGCSYYSLSCDWKMGGARDNQGAVYGDKKQKIINPVWRPVSTQASVNEESLVKDVSEDGSQIQEMHCSTSSNVSDAQLGVEVAEAVNEGTDLTLSSSVSLDDIKDETLEGEPVPSAERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAIIAEAVESPSLDYSHFVSLPLAVHPELVDKLVNFQNTILGITDVCLDENVGSKSNEDASDSEEKEQQVDQEHKVAVELNIGDNSERVKVDRTSIPIVGYEAKASRPSTSSDLGIDKSIFIKPKTFHLTVLMLKLWNKDRVNAATNVLKSISSKVMDALDNRPLFIRLKGLDLMRGSKDKARILYAPVEEIGDGDRLLHACQVIIDAFNEAGLVFHRDYNKKLKLHATLMNIRHKKRRKGTRRVDYFDARDIFKQFGSKEWGEYLIKEAHLSQRFVYDESGFYHCCASIPFPENMQVD

cccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccEEcccccccccEEEEEEcccccccccccccEEccccccccccccccccccccccccccccccccccccEEEEEEEcccccccccccccHHHHHHHHHHccEEEcccccccccEEEEcccHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccHHccccccccccccccccccccccccccccccccccccccEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEcccccccccccEEEEEEccccccHHHHHHHHHHHHHHHHHcccccccccccccEEEEEEEccccccccccccccccccHHHHHHHHcccccccEEccEEEEEccccccccccEEEEEEEEcccccccc

ccHHHHHHcHHHHccccHHHHcccccHHccccccEccccHHHHccccccccccccccccccccccEEEEcccccccccccccccccccccEEEEEEEcccccEEEEEEEEEEEcccccccccccccccccccccccEcccccccccccEEEEEEEcHHHHHHHccccccHHHHHHHHcccEEEEcccccccEEEEEEccHHHHHHHHHHHHHHHHHHHHcccccccEEEEccccccHHHHHHHHHHHHHHHcccccccHHcHHHHHHHHHHHHHHHHccccccEEEEEEcccHHHHHHHHHHHHHHHHccccHHHHcccccccccccHHHccccccEEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEEccccccccEEEEEEEcccccccHHHHHHHHHHHHHHHHcccccccccccccEEEEEEEEEEEEcccccccccccccHHHHHHHHcccccccEEEcEEEEEEccccccccEEEEEEEEcccHHcccc

MLALCRLDRVDRLLKFTStyvnsrpldysqggcsyyslscdwkmggardnqgavygdkkqkiinpvwrpvstqasvneeslvkdvsedgsqiqemhcstssnvsdaQLGVEVAEAVNegtdltlsssvslddikdetlegepvpsaerhslSVEVGASVIRFIkgkegstqKKFEKEMGVkiilpsskkedsiiiegnstDSVAKASEKIQAIIAEAvespsldyshfvslplavhpelVDKLVNFQNTILGitdvcldenvgsksnedasdseekeQQVDQEHKVAVELnigdnservkvdrtsipivgyeakasrpstssdlgidksifikpkTFHLTVLMLKLWNKDRVNAATNVLKSISSKVmdaldnrplfirlkgldlmrgskdkarilyapveeigdgdrLLHACQVIIDAFNEAGLVFHRDYNKKLKLHATLMNIRhkkrrkgtrrvdyfDARDIFKQFGSKEWGEYLIKEAHLsqrfvydesgfyhccasipfpenmqvd

mlalcrldrVDRLLKFtstyvnsrpldysqgGCSYYSLSCDWKMGGARDNQGAvygdkkqkiinpvwrpvstqasvnEESLVKDVSEDGSQIQEMHCSTSSNVSDAQLGVEVAEAVNegtdltlsssvslddiKDETLegepvpsaerhslsvevGASVIRFikgkegstqkkfekemgvkiilpsskkedsiIIEGNSTDSVAKASEKIQAIIAEAVESPSLDYSHFVSLPLAVHPELVDKLVNFQNTILGITDVCLDENVGSKSnedasdseekeqqvdqeHKVAvelnigdnservkvdrtsipivgyeakasrpstssdlgidKSIFIKPKTFHLTVLMLKLWNKDRVNAATNVLKSisskvmdaldnrplfirlkgldlmrgskDKARILYAPVEEIGDGDRLLHACQVIIDAFNEAGLVFHRDYNKKLKLHAtlmnirhkkrrkgtrrvdyfdardifkqfgskewGEYLIKEAHLSQRFVYDESGFYHCCASIPFPENMQVD

MLALCRLDRVDRLLKFTSTYVNSRPLDYSQGGCSYYSLSCDWKMGGARDNQGAVYGDKKQKIINPVWRPVSTQASVNEESLVKDVSEDGSQIQEMHCSTSSNVSDAQLGVEVAEAVNEGtdltlsssvslddIKDETLEGEPVPSAERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAIIAEAVESPSLDYSHFVSLPLAVHPELVDKLVNFQNTILGITDVCLDENVGSKSNEDASDSEEKEQQVDQEHKVAVELNIGDNSERVKVDRTSIPIVGYEAKASRPSTSSDLGIDKSIFIKPKTFHLTVLMLKLWNKDRVNAATNVLKSISSKVMDALDNRPLFIRLKGLDLMRGSKDKARILYAPVEEIGDGDRLLHACQVIIDAFNEAGLVFHRDYNKKLKLHATLMNIRHKKRRKGTRRVDYFDARDIFKQFGSKEWGEYLIKEAHLSQRFVYDESGFYHCCASIPFPENMQVD

**ALCRLDRVDRLLKFTSTYVNSRPLDYSQGGCSYYSLSCDWKMGGARDNQGAVYGDKKQKIINPVWRPV************************************************************************************VGASVIRFIK*****************II**************************IQAIIAEAVESPSLDYSHFVSLPLAVHPELVDKLVNFQNTILGITDVCLDE********************************************SIPIVGY************LGIDKSIFIKPKTFHLTVLMLKLWNKDRVNAATNVLKSISSKVMDALDNRPLFIRLKGLDLMRGSKDKARILYAPVEEIGDGDRLLHACQVIIDAFNEAGLVFHRDYNKKLKLHATLMNIRHKKRRKGTRRVDYFDARDIFKQFGSKEWGEYLIKEAHLSQRFVYDESGFYHCCASIPF*******

***LCR*DRVDRLLKFTSTYV***************************************************************************************************************IKDETLEGEPVPSAERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILP****************SV*KA*******************SHFVSLPLAVHPELVDKLVNFQNTI********************************E*KVAVELNIGDNSERVKVDRTSIPIVGYEAKASRPSTSSDLGIDKSIFIKPKTFHLTVLMLKLWNKDRVNAATNVLKSISSKVMDALDNRPLFIRLKGLDLMRGSKDKARILYAPVEEIGDGDRLLHACQVIIDAFNEAGLVFHRDYNKKLKLHATLMN****************DARDIFKQFGSKEWGEYLIKEAHLSQRFVYDESGFYHCCASIP*PE*****

MLALCRLDRVDRLLKFTSTYVNSRPLDYSQGGCSYYSLSCDWKMGGARDNQGAVYGDKKQKIINPVWRPVSTQASVNEESLVKDVSEDGSQIQEMHCSTSSNVSDAQLGVEVAEAVNEGTDLTLSSSVSLDDIKDETL*************SVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAIIAEAVESPSLDYSHFVSLPLAVHPELVDKLVNFQNTILGITDVCLDENV*********************HKVAVELNIGDNSERVKVDRTSIPIVGYEA*********DLGIDKSIFIKPKTFHLTVLMLKLWNKDRVNAATNVLKSISSKVMDALDNRPLFIRLKGLDLMRGSKDKARILYAPVEEIGDGDRLLHACQVIIDAFNEAGLVFHRDYNKKLKLHATLMNIRHKKRRKGTRRVDYFDARDIFKQFGSKEWGEYLIKEAHLSQRFVYDESGFYHCCASIPFPENMQVD

MLALCRLDRVDRLLKFTSTYVNSRPLDYSQGGCSYYSLSCDWKMGG*****************NPVW****TQ**************DGSQIQEMHCSTSSNVSDAQLGVEVAEAV*************LDDIKDETLEGEPVPSAERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAIIAEAVESPSLDYSHFVSLPLAVHPELVDKLVNFQNTILGITDVCLDENVGSKSNEDASDSEEKEQQVDQEHKVAVELNIGDNSERVKVDRTSIPIVGYEAKASRPSTSSDLGIDKSIFIKPKTFHLTVLMLKLWNKDRVNAATNVLKSISSKVMDALDNRPLFIRLKGLDLMRGSKDKARILYAPVEEIGDGDRLLHACQVIIDAFNEAGLVFHRDYNKKLKLHATLMNIRHKKRRKGTRRVDYFDARDIFKQFGSKEWGEYLIKEAHLSQRFVYDESGFYHCCASIPFPEN****

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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		509	2.2.26 [Sep-21-2011]
Q9D8Z1		356	Activating signal cointeg	yes	no	0.353	0.505	0.284	9e-16
Q8N9N2		400	Activating signal cointeg	no	no	0.349	0.445	0.288	2e-13
Q7TN79		314	A-kinase anchor protein 7	no	no	0.296	0.480	0.263	5e-09
Q6JP77		353	A-kinase anchor protein 7	no	no	0.296	0.427	0.251	1e-07
Q9P0M2		348	A-kinase anchor protein 7	no	no	0.302	0.442	0.232	7e-07
A6X982		204	Uncharacterized protein C	yes	no	0.330	0.823	0.268	0.0001

>sp\|Q9D8Z1\|ASCC1_MOUSE Activating signal cointegrator 1 complex subunit 1 OS=Mus musculus GN=Ascc1 PE=2 SV=1	Back alignment and function desciption

 Score = 85.5 bits (210), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 56/197 (28%), Positives = 89/197 (45%), Gaps = 17/197 (8%)

Query: 321 SSDLGIDKSIFIKPKTFHLTVLMLKLWNKDRVNAATNVLKSISSKVM-DALDNRPLFIRL 379
           S D G+D +IF  PK  HLT+ ML L ++  +     +L+    + + D    RPL + +
Sbjct: 161 SKDRGVDSTIFQNPKKLHLTIGMLVLLSEQEIQQTCEILQRCKEEFINDISGGRPLEVEM 220

Query: 380 KGLDLMRGSKDKARILYAPVEEIGDGDRLLHACQVIIDAFNEAGLVFHRDYNKKLKLHAT 439
            G++ M        +LYA V      +RL      +++ F   GL+  +++   +KLHAT
Sbjct: 221 AGIEYMNDDPAMVDVLYAKVHMKDGSNRLQELVDRVLERFQSLGLIV-KEWTS-VKLHAT 278

Query: 440 LMNIRHKKRRKGTRRVDY--------------FDARDIFKQFGSKEWGEYLIKEAHLSQR 485
           +MN   +K      R +               FD R+I K F +  +G   +   H+SQR
Sbjct: 279 VMNTLLRKDPNAEGRYNLYTADGKYIFKERESFDGRNILKTFENFYFGSLRLNSIHISQR 338

Query: 486 FVYDESGFYHCCASIPF 502
           F  D  G Y  C  + F
Sbjct: 339 FTVDSFGNYASCGHVDF 355

Enhances NF-kappa-B, SRF and AP1 transactivation.
Mus musculus (taxid: 10090)

>sp\|Q8N9N2\|ASCC1_HUMAN Activating signal cointegrator 1 complex subunit 1 OS=Homo sapiens GN=ASCC1 PE=1 SV=1	Back alignment and function description

>sp\|Q7TN79\|AKA7G_MOUSE A-kinase anchor protein 7 isoform gamma OS=Mus musculus GN=Akap7 PE=1 SV=2	Back alignment and function description

>sp\|Q6JP77\|AKA7G_RAT A-kinase anchor protein 7 isoforms delta and gamma OS=Rattus norvegicus GN=Akap7 PE=1 SV=1	Back alignment and function description

>sp\|Q9P0M2\|AKA7G_HUMAN A-kinase anchor protein 7 isoform gamma OS=Homo sapiens GN=AKAP7 PE=1 SV=2	Back alignment and function description

>sp\|A6X982\|YOGD_SCHPO Uncharacterized protein C15D4.13c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC15D4.13c PE=4 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		509
356557291		510	PREDICTED: uncharacterized protein LOC10	0.986	0.984	0.595	1e-167
225442553		476	PREDICTED: uncharacterized protein LOC10	0.907	0.970	0.631	1e-161
388491020		504	unknown [Lotus japonicus]	0.970	0.980	0.581	1e-160
388512801		506	unknown [Medicago truncatula]	0.976	0.982	0.592	1e-159
357454839		560	Activating signal cointegrator 1 complex	0.974	0.885	0.589	1e-157
297743237		923	unnamed protein product [Vitis vinifera]	0.929	0.512	0.587	1e-156
449448002		499	PREDICTED: uncharacterized protein LOC10	0.960	0.979	0.567	1e-154
255549898		416	nucleic acid binding protein, putative [	0.776	0.949	0.679	1e-152
224054382		440	predicted protein [Populus trichocarpa]	0.779	0.902	0.643	1e-145
334185391		449	putative eukaryotic LigT protein [Arabid	0.862	0.977	0.533	1e-134

>gi\|356557291\|ref\|XP_003546951.1\| PREDICTED: uncharacterized protein LOC100785531 [Glycine max]	Back alignment and taxonomy information

 Score =  595 bits (1534), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 308/517 (59%), Positives = 386/517 (74%), Gaps = 15/517 (2%)

Query: 1   MLALCRLDRVDRLLKFTSTYVNSRPLDYSQGGCSYYSLSCDWKMGGARDNQGAVYGDKKQ 60
           M+A   L  V+R+LKFT+TYV SR   + QG  +Y+ LSC++ M G +          KQ
Sbjct: 1   MIACRSLIGVERVLKFTNTYVASRSYCF-QGQSAYHCLSCNFMMSGRKKKICLEDHSIKQ 59

Query: 61  KIINPVWRPVSTQASVNEESLVKDV---SEDGSQIQEMHCSTSSNVSDAQLGVEVAEAVN 117
           K +N +WRP++T AS  +ESL+KD    SEDG ++QE  CSTSS +S+  L    AEA++
Sbjct: 60  KKMNYIWRPIATNASSCDESLMKDALVESEDGCKVQETGCSTSSTISNEHLTKIAAEAMS 119

Query: 118 EGTDLTLSSSVSLDDIKDETLEGEPVPSAERHSLSVEVGASVIRFIKGKEGSTQKKFEKE 177
           E  +   S S  LD++++  LEG+   S E+HS+SV VGAS+ RFIKGK GSTQKK E++
Sbjct: 120 EIAESDTSPSQLLDNVENRVLEGDSSVSTEKHSISVLVGASLFRFIKGKGGSTQKKIEED 179

Query: 178 MGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAIIAEAVESPSLDYSHFVSLPLAVHP 237
           MGVKII+P+SK+ED + IEG S +SV  ASEKIQAII E V S +LDYSHF+SLPLA+HP
Sbjct: 180 MGVKIIMPTSKEEDFVTIEGISVNSVNSASEKIQAIIDETVNSRNLDYSHFISLPLAIHP 239

Query: 238 ELVDKLVNFQNTILGITDVCLDENV--GSKSNED---ASDSEEKEQQVDQEHKVAVELNI 292
           ELV+KL++FQ++ILGI   C+DEN    S SNED    +D++E +Q   +   VAVEL  
Sbjct: 240 ELVNKLISFQHSILGIGS-CMDENTYTESDSNEDEGTTTDTKEVDQLSKENSGVAVELKA 298

Query: 293 GDNSERVKVDRTSIPIVGYEAKASRPSTSSDLGIDKSIFIKPKTFHLTVLMLKLWNKDRV 352
            DNSE VKV+ T+IP+V Y  KAS+ S  SDLGIDKSIFIKPKTFHLTVLMLKLWN +R+
Sbjct: 299 NDNSESVKVNLTNIPLVSYAPKASKSSAPSDLGIDKSIFIKPKTFHLTVLMLKLWNNERI 358

Query: 353 NAATNVLKSISSKVMDALDNRPLFIRLKGLDLMRGSKDKARILYAPVEEIGDGDRLLHAC 412
             A+ VL+SISSKVM+ALDNRPL IRLKGL+ M+GS  KAR+LYAPVEEI    RLL AC
Sbjct: 359 KTASEVLQSISSKVMEALDNRPLSIRLKGLECMKGSLAKARVLYAPVEEIASEGRLLRAC 418

Query: 413 QVIIDAFNEAGLVFHRDYNKKLKLHATLMNIRHKKRRKGTRRVDYFDARDIFKQFGSKEW 472
           QVIIDA+ EAGLV   D  +KLKLHAT+MN RH+K     R+VD FDAR IFKQ+GS++W
Sbjct: 419 QVIIDAYVEAGLVLENDAKQKLKLHATVMNARHRK-----RKVDSFDARGIFKQYGSEDW 473

Query: 473 GEYLIKEAHLSQRFVYDESGFYHCCASIPFPENMQVD 509
           G+YLI+EAHLSQRF +DE+G+YHCCASIPFPENMQV+
Sbjct: 474 GQYLIREAHLSQRFSFDENGYYHCCASIPFPENMQVE 510

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|225442553\|ref\|XP_002279009.1\| PREDICTED: uncharacterized protein LOC100266864 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|388491020\|gb\|AFK33576.1\| unknown [Lotus japonicus]	Back alignment and taxonomy information

>gi\|388512801\|gb\|AFK44462.1\| unknown [Medicago truncatula]	Back alignment and taxonomy information

>gi\|357454839\|ref\|XP_003597700.1\| Activating signal cointegrator 1 complex subunit [Medicago truncatula] gi\|355486748\|gb\|AES67951.1\| Activating signal cointegrator 1 complex subunit [Medicago truncatula]	Back alignment and taxonomy information

>gi\|297743237\|emb\|CBI36104.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449448002\|ref\|XP_004141755.1\| PREDICTED: uncharacterized protein LOC101217658 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|255549898\|ref\|XP_002516000.1\| nucleic acid binding protein, putative [Ricinus communis] gi\|223544905\|gb\|EEF46420.1\| nucleic acid binding protein, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|224054382\|ref\|XP_002298232.1\| predicted protein [Populus trichocarpa] gi\|222845490\|gb\|EEE83037.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|334185391\|ref\|NP_001189909.1\| putative eukaryotic LigT protein [Arabidopsis thaliana] gi\|332642266\|gb\|AEE75787.1\| putative eukaryotic LigT protein [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		509
TAIR\|locus:2094907		257	AT3G16220 "AT3G16220" [Arabido	0.357	0.708	0.583	1.3e-63
UNIPROTKB\|Q0IIJ9		357	ASCC1 "Uncharacterized protein	0.353	0.504	0.299	1.6e-23
UNIPROTKB\|E2RKL0		357	ASCC1 "Uncharacterized protein	0.353	0.504	0.294	5.2e-23
ZFIN\|ZDB-GENE-050417-80		353	ascc1 "activating signal coint	0.351	0.507	0.295	6.2e-23
UNIPROTKB\|I3L6H8		357	ASCC1 "Uncharacterized protein	0.353	0.504	0.294	8.5e-23
UNIPROTKB\|F5H874		379	ASCC1 "Activating signal coint	0.353	0.474	0.304	3.5e-22
RGD\|1359255		356	Ascc1 "activating signal coint	0.353	0.505	0.284	2e-21
MGI\|MGI:1916340		356	Ascc1 "activating signal coint	0.353	0.505	0.284	2.5e-21
UNIPROTKB\|H0YCB3		292	ASCC1 "Activating signal coint	0.349	0.609	0.288	3.8e-21
UNIPROTKB\|F1NT55		354	ASCC1 "Uncharacterized protein	0.337	0.485	0.285	3.1e-20

TAIR\|locus:2094907 AT3G16220 "AT3G16220" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 573 (206.8 bits), Expect = 1.3e-63, Sum P(2) = 1.3e-63
 Identities = 108/185 (58%), Positives = 143/185 (77%)

Query:   319 STSSDLGIDKSIFIKPKTFHLTVLMLKLWNKDRVNAATNVLKSISSKVMDALDNRPLFIR 378
             ST +++GI+KSIF+ PKTFHLTV+MLKL N + V  A N+L+SI S V  AL NRP+FIR
Sbjct:    74 STLAEMGIEKSIFVTPKTFHLTVVMLKLENNESVVKAQNILQSIFSNVRQALKNRPVFIR 133

Query:   379 LKGLDLMRGSKDKARILYAPVEEIGDGDRLLHACQVIIDAFNEAGLVFHRDYNKKLKLHA 438
             L+GL+ M GS DK R+LYAPVEE+G   RLL+AC VIIDAF   G    +D   +LKLHA
Sbjct:   134 LRGLECMSGSLDKTRVLYAPVEEVGREGRLLNACHVIIDAFENVGFA-GKDAKSRLKLHA 192

Query:   439 TLMNIRHKKRRKGTRRVDYFDARDIFKQFGSKEWGEYLIKEAHLSQRFVYDESGFYHCCA 498
             TLMN  ++K +  ++++D FDAR+I K+F +K+WG YLI+EAH+SQR+ YD +G++HCCA
Sbjct:   193 TLMNASYRKDK--SKKMDTFDAREIHKEFENKDWGTYLIREAHISQRYKYDPNGYFHCCA 250

Query:   499 SIPFP 503
             S+PFP
Sbjct:   251 SLPFP 255

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB\|Q0IIJ9 ASCC1 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|E2RKL0 ASCC1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-050417-80 ascc1 "activating signal cointegrator 1 complex subunit 1" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|I3L6H8 ASCC1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|F5H874 ASCC1 "Activating signal cointegrator 1 complex subunit 1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

RGD\|1359255 Ascc1 "activating signal cointegrator 1 complex subunit 1" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

MGI\|MGI:1916340 Ascc1 "activating signal cointegrator 1 complex subunit 1" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|H0YCB3 ASCC1 "Activating signal cointegrator 1 complex subunit 1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NT55 ASCC1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00034352001	SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (425 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		509
PLN00108		257	PLN00108, PLN00108, unknown protein; Provisional	1e-73
pfam10469		205	pfam10469, AKAP7_NLS, AKAP7 2'5' RNA ligase-like d	6e-57
cd02394		62	cd02394, vigilin_like_KH, K homology RNA-binding d	7e-08
cd00105		64	cd00105, KH-I, K homology RNA-binding domain, type	2e-06
smart00322		68	smart00322, KH, K homology RNA-binding domain	6e-06
pfam00013		59	pfam00013, KH_1, KH domain	1e-05
PLN00108		257	PLN00108, PLN00108, unknown protein; Provisional	3e-04
TIGR03665		172	TIGR03665, arCOG04150, arCOG04150 universal archae	0.001
PRK13763		180	PRK13763, PRK13763, putative RNA-processing protei	0.002
cd02395		120	cd02395, SF1_like-KH, Splicing factor 1 (SF1) K ho	0.002
pfam13014		42	pfam13014, KH_3, KH domain	0.003

>gnl\|CDD\|177724 PLN00108, PLN00108, unknown protein; Provisional	Back alignment and domain information

 Score =  233 bits (595), Expect = 1e-73
 Identities = 110/185 (59%), Positives = 144/185 (77%), Gaps = 3/185 (1%)

Query: 319 STSSDLGIDKSIFIKPKTFHLTVLMLKLWNKDRVNAATNVLKSISSKVMDALDNRPLFIR 378
           ST +++GI+KSIF+ PKTFHLTV+MLKL N + V  A N+LKSI S V  AL +RP+FIR
Sbjct: 74  STLAEMGIEKSIFVSPKTFHLTVVMLKLENNESVVKAQNILKSICSNVRQALKDRPVFIR 133

Query: 379 LKGLDLMRGSKDKARILYAPVEEIGDGDRLLHACQVIIDAFNEAGLVFHRDYNKKLKLHA 438
           L+GLD M GS DK R+LYAPVEE+G   RLL+AC VIIDAF  AG    +D   +LKLHA
Sbjct: 134 LRGLDCMNGSLDKTRVLYAPVEEVGHEGRLLNACHVIIDAFENAGFA-GKDAKSRLKLHA 192

Query: 439 TLMNIRHKKRRKGTRRVDYFDARDIFKQFGSKEWGEYLIKEAHLSQRFVYDESGFYHCCA 498
           TLMN  ++K +  ++++D FDAR+I K+F +K+WG YLI+EAH+SQR+ YD +G++HCCA
Sbjct: 193 TLMNASYRKDK--SKKMDTFDAREIHKEFENKDWGTYLIREAHISQRYKYDPNGYFHCCA 250

Query: 499 SIPFP 503
           S+PFP
Sbjct: 251 SLPFP 255

Length = 257

>gnl\|CDD\|220770 pfam10469, AKAP7_NLS, AKAP7 2'5' RNA ligase-like domain	Back alignment and domain information

>gnl\|CDD\|239087 cd02394, vigilin_like_KH, K homology RNA-binding domain_vigilin_like	Back alignment and domain information

>gnl\|CDD\|238053 cd00105, KH-I, K homology RNA-binding domain, type I	Back alignment and domain information

>gnl\|CDD\|197652 smart00322, KH, K homology RNA-binding domain	Back alignment and domain information

>gnl\|CDD\|215657 pfam00013, KH_1, KH domain	Back alignment and domain information

>gnl\|CDD\|177724 PLN00108, PLN00108, unknown protein; Provisional	Back alignment and domain information

>gnl\|CDD\|211858 TIGR03665, arCOG04150, arCOG04150 universal archaeal KH domain protein	Back alignment and domain information

>gnl\|CDD\|237494 PRK13763, PRK13763, putative RNA-processing protein; Provisional	Back alignment and domain information

>gnl\|CDD\|239088 cd02395, SF1_like-KH, Splicing factor 1 (SF1) K homology RNA-binding domain (KH)	Back alignment and domain information

>gnl\|CDD\|221895 pfam13014, KH_3, KH domain	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		509
KOG2814		345	consensus Transcription coactivator complex, P50 c	100.0
PLN00108		257	unknown protein; Provisional	100.0
PF10469		209	AKAP7_NLS: AKAP7 2'5' RNA ligase-like domain; Inte	100.0
COG1514		180	LigT 2'-5' RNA ligase [Translation, ribosomal stru	99.96
PRK15124		176	2'-5' RNA ligase; Provisional	99.94
TIGR02258		179	2_5_ligase 2'-5' RNA ligase. This protein family c	99.94
PRK13679		168	hypothetical protein; Provisional	99.75
PHA02574		149	57B hypothetical protein; Provisional	99.71
PF13563		153	2_5_RNA_ligase2: 2'-5' RNA ligase superfamily; PDB	99.34
cd02394		62	vigilin_like_KH K homology RNA-binding domain_vigi	99.25
cd02393		61	PNPase_KH Polynucleotide phosphorylase (PNPase) K	99.24
PF00013		60	KH_1: KH domain syndrome, contains KH motifs.; Int	99.17
PF02834		87	LigT_PEase: LigT like Phosphoesterase; InterPro: I	99.05
PF05213		248	Corona_NS2A: Coronavirus NS2A protein; InterPro: I	98.95
cd00105		64	KH-I K homology RNA-binding domain, type I. KH bin	98.94
cd02396		65	PCBP_like_KH K homology RNA-binding domain, PCBP_l	98.82
smart00322		69	KH K homology RNA-binding domain.	98.75
cd02395		120	SF1_like-KH Splicing factor 1 (SF1) K homology RNA	98.74
PF13014		43	KH_3: KH domain	98.73
KOG1676		600	consensus K-homology type RNA binding proteins [RN	98.58
KOG0119		554	consensus Splicing factor 1/branch point binding p	98.36
PRK13763		180	putative RNA-processing protein; Provisional	98.34
TIGR03665		172	arCOG04150 arCOG04150 universal archaeal KH domain	98.3
PRK13763		180	putative RNA-processing protein; Provisional	98.02
COG5176		269	MSL5 Splicing factor (branch point binding protein	97.95
TIGR03665		172	arCOG04150 arCOG04150 universal archaeal KH domain	97.93
KOG2208		753	consensus Vigilin [Lipid transport and metabolism]	97.91
KOG2191		402	consensus RNA-binding protein NOVA1/PASILLA and re	97.89
TIGR02696		719	pppGpp_PNP guanosine pentaphosphate synthetase I/p	97.85
KOG2193		584	consensus IGF-II mRNA-binding protein IMP, contain	97.82
TIGR03591		684	polynuc_phos polyribonucleotide nucleotidyltransfe	97.7
KOG1588		259	consensus RNA-binding protein Sam68 and related KH	97.57
KOG1676		600	consensus K-homology type RNA binding proteins [RN	97.54
KOG2193		584	consensus IGF-II mRNA-binding protein IMP, contain	97.45
PRK04163		235	exosome complex RNA-binding protein Rrp4; Provisio	97.29
COG1094		194	Predicted RNA-binding protein (contains KH domains	97.26
KOG2113		394	consensus Predicted RNA binding protein, contains	97.22
KOG2190		485	consensus PolyC-binding proteins alphaCP-1 and rel	97.21
KOG2191		402	consensus RNA-binding protein NOVA1/PASILLA and re	97.2
PLN00207		891	polyribonucleotide nucleotidyltransferase; Provisi	97.18
COG1185		692	Pnp Polyribonucleotide nucleotidyltransferase (pol	97.04
KOG2192		390	consensus PolyC-binding hnRNP-K protein HRB57A/hnR	97.01
PRK11824		693	polynucleotide phosphorylase/polyadenylase; Provis	96.88
PF02834		87	LigT_PEase: LigT like Phosphoesterase; InterPro: I	96.66
TIGR03319		514	YmdA_YtgF conserved hypothetical protein YmdA/YtgF	96.54
PF09749		239	HVSL: Uncharacterised conserved protein; InterPro:	96.48
PRK00106		535	hypothetical protein; Provisional	96.45
KOG0336		629	consensus ATP-dependent RNA helicase [RNA processi	96.45
PRK12704		520	phosphodiesterase; Provisional	96.4
COG1094		194	Predicted RNA-binding protein (contains KH domains	96.11
PF07823		196	CPDase: Cyclic phosphodiesterase-like protein; Int	95.83
COG1097		239	RRP4 RNA-binding protein Rrp4 and related proteins	95.27
cd02134		61	NusA_KH NusA_K homology RNA-binding domain (KH). N	95.07
PRK12705		508	hypothetical protein; Provisional	95.07
KOG2279		608	consensus Kinase anchor protein AKAP149, contains	94.9
KOG1067		760	consensus Predicted RNA-binding polyribonucleotide	94.24
KOG2192		390	consensus PolyC-binding hnRNP-K protein HRB57A/hnR	93.95
KOG2190		485	consensus PolyC-binding proteins alphaCP-1 and rel	93.32
KOG2814		345	consensus Transcription coactivator complex, P50 c	93.05
TIGR03223		228	Phn_opern_protn putative phosphonate metabolism pr	91.77
KOG2208		753	consensus Vigilin [Lipid transport and metabolism]	90.81
PF14611		210	SLS: Mitochondrial inner-membrane-bound regulator	87.39
COG1855		604	ATPase (PilT family) [General function prediction	86.16
KOG2113		394	consensus Predicted RNA binding protein, contains	85.78
KOG3273		252	consensus Predicted RNA-binding protein Pno1p inte	84.57
cd02409		68	KH-II KH-II (K homology RNA-binding domain, type I	84.19
PRK02821		77	hypothetical protein; Provisional	83.88
PF13083		73	KH_4: KH domain; PDB: 3GKU_B.	82.91
PRK08406		140	transcription elongation factor NusA-like protein;	82.54
PRK00468		75	hypothetical protein; Provisional	82.38
PRK13764		602	ATPase; Provisional	82.04
PF10469		209	AKAP7_NLS: AKAP7 2'5' RNA ligase-like domain; Inte	81.91
COG1837		76	Predicted RNA-binding protein (contains KH domain)	81.79

>KOG2814 consensus Transcription coactivator complex, P50 component (LigT RNA ligase/phosphodiesterase family) [Transcription]	Back alignment and domain information

Probab=100.00  E-value=8.1e-49  Score=392.14  Aligned_cols=338  Identities=36%  Similarity=0.555  Sum_probs=289.5

Q ss_pred             cccccccccCceeeeccccccccccccccccCCCCCceEEe-eeccCCcccccccceeeeecccccccccCCcccccccc
Q 010498           55 YGDKKQKIINPVWRPVSTQASVNEESLVKDVSEDGSQIQEM-HCSTSSNVSDAQLGVEVAEAVNEGTDLTLSSSVSLDDI  133 (509)
Q Consensus        55 ~~~~~~k~~~~~wrp~~t~a~~~~~~~~~~~~~~~~~~~e~-~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ss~~~~~~~  133 (509)
                      +..++++..|.+|+|++|+.++..       .+++...|++ .|+++...+.+                          +
T Consensus         2 ~~~~~~~~~n~~~~~~~~~t~~~~-------~~~~~e~~~~~~c~d~p~~~~d--------------------------v   48 (345)
T KOG2814|consen    2 YRKTRYNLVNDVSFDLNTDTTFAD-------MSEEFEAQTSAECVDMPGDTVD--------------------------V   48 (345)
T ss_pred             cchhhhhhhhhcccCccccccccc-------CchhhHHHhHhhcccCCCChHH--------------------------h
Confidence            456788999999999999988763       3345556666 66666533321                          1


Q ss_pred             cccccCCCCccCCCCeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC-CCcEEEEccChhHHHHHHHHHHH
Q 010498          134 KDETLEGEPVPSAERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK-EDSIIIEGNSTDSVAKASEKIQA  212 (509)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~-~~~I~I~G~s~~~v~~A~~~I~~  212 (509)
                      +.-       .-.++|+.++.|+++|+++|||++|.|+++||+||+|+|.+|++++ .+.|+|+|.++.+|.+|.+||..
T Consensus        49 ~~~-------~~~~~~~~si~v~s~~~~~lig~~g~trkkle~Etq~~i~lp~p~~n~~~i~i~~~~~~~V~~a~~Ri~~  121 (345)
T KOG2814|consen   49 EDD-------AGAKDFSSSILVRSSFIGWLIGKQGKTRKKLEEETQTNIFLPRPNTNKEEIKIIGISRNCVIQALERIAK  121 (345)
T ss_pred             hhc-------cccccchhhhhhhHHHhhhhhcccchHHHHHHHhhccceEccCCCCCcceEEEeehhHHHHHHHHHHHHH
Confidence            111       1123889999999999999999999999999999999999999995 78999999999999999999999


Q ss_pred             HHHHhhhCCCCCceEEEEeccccchhhhccHHHHHHHHhcccccccccccCCCCCccccchHHhhhcccCCceEEEEccC
Q 010498          213 IIAEAVESPSLDYSHFVSLPLAVHPELVDKLVNFQNTILGITDVCLDENVGSKSNEDASDSEEKEQQVDQEHKVAVELNI  292 (509)
Q Consensus       213 i~~~~~~~~k~~~tHFIsIPl~~hp~I~~~~~~f~~~Il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~FVAv~l~~  292 (509)
                      ++++.++  +++.|||+.+|++ ...+.++|..|+...+..                                       
T Consensus       122 ~ids~r~--s~p~thflal~ln-e~eVqe~f~~fke~~~~~---------------------------------------  159 (345)
T KOG2814|consen  122 LIDSDRK--SFPITHFLALPLN-EHEVQEGFLAFKELKPFI---------------------------------------  159 (345)
T ss_pred             HHHhhhh--cCchhhhhhhhcc-hHHHHHHHHHHHhhhhhH---------------------------------------
Confidence            9999887  7899999999998 578999999987322211                                       


Q ss_pred             CcchhHHHHhhccCcccccccccCCCCCCCCCCCCcccccCCCCceEEeeccccCCHHHHHHHHHHHHHhHHhhhhhcCC
Q 010498          293 GDNSERVKVDRTSIPIVGYEAKASRPSTSSDLGIDKSIFIKPKTFHLTVLMLKLWNKDRVNAATNVLKSISSKVMDALDN  372 (509)
Q Consensus       293 ~~~~~~v~~~q~~i~~~~~~~~~~r~~~~~~~Gld~~~fv~p~~LHLTL~fLgl~dee~v~~a~~aL~~i~~~i~~~L~~  372 (509)
                                 ++               +-+.|++.+.|++|..+||||+|+.+++++++++|+++|+.+.+++....+.
T Consensus       160 -----------es---------------l~~~g~~~s~F~~p~~~HLTvgm~~L~~dd~vq~a~e~les~~~e~~~~~~~  213 (345)
T KOG2814|consen  160 -----------ES---------------LLDGGIDKSLFQGPGTFHLTVGMLKLLNDDDVQKALEILESTFQEIRIDVGE  213 (345)
T ss_pred             -----------HH---------------hhccchhhccccCCceeeEEEEEEEecChHHHHHHHHHHHHHHHHHHhccCC
Confidence                       00               1256888999999999999999999999999999999999998888888888


Q ss_pred             CCeEEEEceeccCCCCCCCceEEEEeeeccCChhHHHHHH-HHHHHHHHHCCCccccCCCCCceeeEEeeeecccccccC
Q 010498          373 RPLFIRLKGLDLMRGSKDKARILYAPVEEIGDGDRLLHAC-QVIIDAFNEAGLVFHRDYNKKLKLHATLMNIRHKKRRKG  451 (509)
Q Consensus       373 ~pf~L~l~GLg~F~~dp~~pRVLyagV~~~~~~~~L~~L~-~~L~~~f~~~Gl~~e~~~~r~fkPHiTLaR~k~~~~~~~  451 (509)
                      .|+.+.++|+.+|+++|..++||||+|++.+....|+..+ +.|..+|...|+...  +.++.++|+|+||++|++.++.
T Consensus       214 kp~~i~lkG~~~mnddP~~~kVLYAkv~~~~~e~~l~~~~~~~i~~~f~~~~li~k--~~~~~kLH~TvmNsryrk~~~~  291 (345)
T KOG2814|consen  214 KPLFIDLKGLDKMNDDPSLTKVLYAKVEPDDYEKFLQHRCGERILERFVASGLIKK--ESSSLKLHCTVMNSRYRKNGGE  291 (345)
T ss_pred             CceeeeccchhhhcCCHhHheeeeeeccCcchHHHHHHHHHHHHHHHHHHhcchhc--cccccEEEEEEehhhhhhcCCC
Confidence            9999999999999999999999999999877778899988 999999999999885  4789999999999999876431


Q ss_pred             ---CCccccccHHHHHHHhCCCccccEEecEEEEEeeecCCCCCceeEEEEEeC
Q 010498          452 ---TRRVDYFDARDIFKQFGSKEWGEYLIKEAHLSQRFVYDESGFYHCCASIPF  502 (509)
Q Consensus       452 ---~~~~~~fda~~il~~~~d~~fG~~~V~eI~Ls~l~~~~~~g~Y~~i~si~L  502 (509)
                         .+....||++++++.|+++.||++...++|||.+...+.+|||.+++++||
T Consensus       292 ~g~~K~~~~Fdar~ilk~fg~f~fg~~~~~eih~~~~~~~d~ng~y~~~gsi~f  345 (345)
T KOG2814|consen  292 PGLVKESESFDAREILKAFGQFLFGELKLQEIHLSVRFAADQNGNYNECGSIPF  345 (345)
T ss_pred             cchhhHhhhccHHHHHHHHhhHhHhhcccceeeeeeeeccccccchhhhcCCCC
Confidence               245678999999999999999999999999999998889999999999986

>PLN00108 unknown protein; Provisional	Back alignment and domain information

>PF10469 AKAP7_NLS: AKAP7 2'5' RNA ligase-like domain; InterPro: IPR019510 This entry represents the N-terminal nuclear localisation signal-containing domain found in the cyclic AMP-dependent protein kinase A (PKA) anchor protein, AKAP7	Back alignment and domain information

>COG1514 LigT 2'-5' RNA ligase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK15124 2'-5' RNA ligase; Provisional	Back alignment and domain information

>TIGR02258 2_5_ligase 2'-5' RNA ligase	Back alignment and domain information

>PRK13679 hypothetical protein; Provisional	Back alignment and domain information

>PHA02574 57B hypothetical protein; Provisional	Back alignment and domain information

>PF13563 2_5_RNA_ligase2: 2'-5' RNA ligase superfamily; PDB: 1IUH_A	Back alignment and domain information

>cd02394 vigilin_like_KH K homology RNA-binding domain_vigilin_like	Back alignment and domain information

>cd02393 PNPase_KH Polynucleotide phosphorylase (PNPase) K homology RNA-binding domain (KH)	Back alignment and domain information

>PF00013 KH_1: KH domain syndrome, contains KH motifs	Back alignment and domain information

>PF02834 LigT_PEase: LigT like Phosphoesterase; InterPro: IPR014051 This entry represents a domain found in a number of known and predicted phosphoesterases	Back alignment and domain information

>PF05213 Corona_NS2A: Coronavirus NS2A protein; InterPro: IPR007878 This entry is represented by Coronavirus non-structural protein 2A (32kDa); it is a family of uncharacterised viral proteins	Back alignment and domain information

>cd00105 KH-I K homology RNA-binding domain, type I	Back alignment and domain information

>cd02396 PCBP_like_KH K homology RNA-binding domain, PCBP_like	Back alignment and domain information

>smart00322 KH K homology RNA-binding domain	Back alignment and domain information

>cd02395 SF1_like-KH Splicing factor 1 (SF1) K homology RNA-binding domain (KH)	Back alignment and domain information

>PF13014 KH_3: KH domain	Back alignment and domain information

>KOG1676 consensus K-homology type RNA binding proteins [RNA processing and modification]	Back alignment and domain information

>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification]	Back alignment and domain information

>PRK13763 putative RNA-processing protein; Provisional	Back alignment and domain information

>TIGR03665 arCOG04150 arCOG04150 universal archaeal KH domain protein	Back alignment and domain information

>PRK13763 putative RNA-processing protein; Provisional	Back alignment and domain information

>COG5176 MSL5 Splicing factor (branch point binding protein) [RNA processing and modification]	Back alignment and domain information

>TIGR03665 arCOG04150 arCOG04150 universal archaeal KH domain protein	Back alignment and domain information

>KOG2208 consensus Vigilin [Lipid transport and metabolism]	Back alignment and domain information

>KOG2191 consensus RNA-binding protein NOVA1/PASILLA and related KH domain proteins [RNA processing and modification; General function prediction only]	Back alignment and domain information

>TIGR02696 pppGpp_PNP guanosine pentaphosphate synthetase I/polynucleotide phosphorylase	Back alignment and domain information

>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]	Back alignment and domain information

>TIGR03591 polynuc_phos polyribonucleotide nucleotidyltransferase	Back alignment and domain information

>KOG1588 consensus RNA-binding protein Sam68 and related KH domain proteins [RNA processing and modification]	Back alignment and domain information

>KOG1676 consensus K-homology type RNA binding proteins [RNA processing and modification]	Back alignment and domain information

>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]	Back alignment and domain information

>PRK04163 exosome complex RNA-binding protein Rrp4; Provisional	Back alignment and domain information

>COG1094 Predicted RNA-binding protein (contains KH domains) [General function prediction only]	Back alignment and domain information

>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]	Back alignment and domain information

>KOG2190 consensus PolyC-binding proteins alphaCP-1 and related KH domain proteins [RNA processing and modification; General function prediction only]	Back alignment and domain information

>KOG2191 consensus RNA-binding protein NOVA1/PASILLA and related KH domain proteins [RNA processing and modification; General function prediction only]	Back alignment and domain information

>PLN00207 polyribonucleotide nucleotidyltransferase; Provisional	Back alignment and domain information

>COG1185 Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG2192 consensus PolyC-binding hnRNP-K protein HRB57A/hnRNP, contains KH domain [RNA processing and modification; General function prediction only]	Back alignment and domain information

>PRK11824 polynucleotide phosphorylase/polyadenylase; Provisional	Back alignment and domain information

>PF02834 LigT_PEase: LigT like Phosphoesterase; InterPro: IPR014051 This entry represents a domain found in a number of known and predicted phosphoesterases	Back alignment and domain information

>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF	Back alignment and domain information

>PF09749 HVSL: Uncharacterised conserved protein; InterPro: IPR019146 This entry is of proteins of approximately 300 residues conserved from plants to humans	Back alignment and domain information

>PRK00106 hypothetical protein; Provisional	Back alignment and domain information

>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]	Back alignment and domain information

>PRK12704 phosphodiesterase; Provisional	Back alignment and domain information

>COG1094 Predicted RNA-binding protein (contains KH domains) [General function prediction only]	Back alignment and domain information

>PF07823 CPDase: Cyclic phosphodiesterase-like protein; InterPro: IPR012386 2',3' Cyclic nucleotide phosphodiesterases (CPDases) are enzymes that catalyse at least two distinct steps in the splicing of tRNA introns in eukaryotes	Back alignment and domain information

>COG1097 RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>cd02134 NusA_KH NusA_K homology RNA-binding domain (KH)	Back alignment and domain information

>PRK12705 hypothetical protein; Provisional	Back alignment and domain information

>KOG2279 consensus Kinase anchor protein AKAP149, contains KH and Tudor RNA-binding domains [Signal transduction mechanisms]	Back alignment and domain information

>KOG1067 consensus Predicted RNA-binding polyribonucleotide nucleotidyltransferase [General function prediction only]	Back alignment and domain information

>KOG2192 consensus PolyC-binding hnRNP-K protein HRB57A/hnRNP, contains KH domain [RNA processing and modification; General function prediction only]	Back alignment and domain information

>KOG2190 consensus PolyC-binding proteins alphaCP-1 and related KH domain proteins [RNA processing and modification; General function prediction only]	Back alignment and domain information

>KOG2814 consensus Transcription coactivator complex, P50 component (LigT RNA ligase/phosphodiesterase family) [Transcription]	Back alignment and domain information

>TIGR03223 Phn_opern_protn putative phosphonate metabolism protein	Back alignment and domain information

>KOG2208 consensus Vigilin [Lipid transport and metabolism]	Back alignment and domain information

>PF14611 SLS: Mitochondrial inner-membrane-bound regulator	Back alignment and domain information

>COG1855 ATPase (PilT family) [General function prediction only]	Back alignment and domain information

>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]	Back alignment and domain information

>KOG3273 consensus Predicted RNA-binding protein Pno1p interacting with Nob1p and involved in 26S proteasome assembly [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>cd02409 KH-II KH-II (K homology RNA-binding domain, type II)	Back alignment and domain information

>PRK02821 hypothetical protein; Provisional	Back alignment and domain information

>PF13083 KH_4: KH domain; PDB: 3GKU_B	Back alignment and domain information

>PRK08406 transcription elongation factor NusA-like protein; Validated	Back alignment and domain information

>PRK00468 hypothetical protein; Provisional	Back alignment and domain information

>PRK13764 ATPase; Provisional	Back alignment and domain information

>PF10469 AKAP7_NLS: AKAP7 2'5' RNA ligase-like domain; InterPro: IPR019510 This entry represents the N-terminal nuclear localisation signal-containing domain found in the cyclic AMP-dependent protein kinase A (PKA) anchor protein, AKAP7	Back alignment and domain information

>COG1837 Predicted RNA-binding protein (contains KH domain) [General function prediction only]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		509
2vfk_A		205	Akap18 Delta Central Domain - Amp Length = 205		2e-08

>pdb|2VFK|A Chain A, Akap18 Delta Central Domain - Amp Length = 205

Back alignment and structure

Iteration: 1

Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 44/175 (25%), Positives = 81/175 (46%), Gaps = 20/175 (11%) Query: 336 TFHLTVLMLKLWNKDRVNAATNVLKSISSKVMDALDNRPLFIRLKGLDLMRGSKDKARIL 395 +FH+T+L+++L N+D VN T+ L + V + L+ + L + G+ +G + Sbjct: 43 SFHITLLVMQLLNEDEVNIGTDALLELKPFVEEILEGKHLTLPFHGIGTFQGQVGFVK-- 100 Query: 396 YAPVEEIGDGDR---LLHACQVIIDAFNEAGLVFHRDYNKKLKLHATLMNIRHKKR--RK 450 + DGD LL + F E G++ ++ K H T M + +K Sbjct: 101 ------LADGDHVSALLEIAETAKRTFQEKGIL--AGESRTFKPHLTFMKLSKAPMLWKK 152 Query: 451 GTRRVDYFDARDIFKQFGSKEWGEYLIKEAHLSQRFVYDES-GFYHCCASIPFPE 504 G R+++ +++QF +GE ++ + L +S G+YHC +SI E Sbjct: 153 GVRKIE----PGLYEQFIDHRFGEEILYQIDLCSMLKKKQSNGYYHCESSIVIGE 203

PyMOL of 2vfk

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		509
2vfk_A		205	AKAP18 delta; APO, hydrolase; HET: AMP; 1.50A {Hom	1e-40
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-10
2cte_A		94	Vigilin; K homology type I domain, RNA-binding, ce	7e-10
2dgr_A		83	Ring finger and KH domain-containing protein 1; st	4e-09
1vig_A		71	Vigilin; RNA-binding protein, ribonucleoprotein; N	5e-09
2ctk_A		104	Vigilin; K homology type I domain, RNA-binding, ce	3e-08
2ctl_A		97	Vigilin; K homology type I domain, RNA-binding, ce	2e-07
2ctm_A		95	Vigilin; K homology type I domain, RNA-binding, ce	2e-06
2hh3_A		106	KH-type splicing regulatory protein; KH-RNA bindin	4e-06
2ctf_A		102	Vigilin; K homology type I domain, RNA-binding, ce	2e-05
3krm_A		163	Insulin-like growth factor 2 mRNA-binding protein	4e-05
1vgj_A		184	Hypothetical protein PH0099; alpha+beta, LIGT-like	5e-05
2opv_A		85	KHSRP protein; KH domain, RNA binding protein, KSR	6e-05
1x4m_A		94	FAR upstream element binding protein 1; KH domain,	1e-04
2jzx_A		160	Poly(RC)-binding protein 2; PCBP2, KH domains, RNA	1e-04
2hh2_A		107	KH-type splicing regulatory protein; KH-RNA bindin	4e-04
1x4n_A		92	FAR upstream element binding protein 1; KH domain,	4e-04
2ctj_A		95	Vigilin; K homology type I domain, RNA-binding, ce	4e-04
2jvz_A		164	KH type-splicing, FAR upstream element-binding pro	6e-04

>2vfk_A AKAP18 delta; APO, hydrolase; HET: AMP; 1.50A {Homo sapiens} PDB: 2vfl_A* 2vfy_A Length = 205	Back alignment and structure

 Score =  144 bits (365), Expect = 1e-40
 Identities = 38/179 (21%), Positives = 76/179 (42%), Gaps = 10/179 (5%)

Query: 328 KSIFIKPKTFHLTVLMLKLWNKDRVNAATNVLKSISSKVMDALDNRPLFIRLKGLDLMRG 387
               +   +FH+T+L+++L N+D VN  T+ L  +   V + L+ + L +   G+   +G
Sbjct: 35  TKAMVGDGSFHITLLVMQLLNEDEVNIGTDALLELKPFVEEILEGKHLTLPFHGIGTFQG 94

Query: 388 SKDKARILYAPVEEIGDGDRLLHACQVIIDAFNEAGLVFHRDYNKKLKLHATLMNIRHKK 447
                ++ +  + +      LL   +     F E G++      +  K H T M +    
Sbjct: 95  -----QVGFVKLADGDHVSALLEIAETAKRTFQEKGILAGES--RTFKPHLTFMKLSKAP 147

Query: 448 RRKGTRRVDYFDARDIFKQFGSKEWGEYLIKEAHL-SQRFVYDESGFYHCCASIPFPEN 505
                ++        +++QF    +GE ++ +  L S       +G+YHC +SI   E 
Sbjct: 148 MLW--KKGVRKIEPGLYEQFIDHRFGEEILYQIDLCSMLKKKQSNGYYHCESSIVIGEK 204

PyMOL of 2vfk

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Length = 94	Back alignment and structure

>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 83	Back alignment and structure

>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A Length = 71	Back alignment and structure

>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Length = 104	Back alignment and structure

>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Length = 97	Back alignment and structure

>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Length = 95	Back alignment and structure

>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens} Length = 106	Back alignment and structure

>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Length = 102	Back alignment and structure

>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens} Length = 163	Back alignment and structure

>1vgj_A Hypothetical protein PH0099; alpha+beta, LIGT-like, structural genomics, ligase; 1.94A {Pyrococcus horikoshii} PDB: 1vdx_A 2fyh_A Length = 184	Back alignment and structure

>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens} Length = 85	Back alignment and structure

>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 Length = 94	Back alignment and structure

>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens} Length = 160	Back alignment and structure

>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens} Length = 107	Back alignment and structure

>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A Length = 92	Back alignment and structure

>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Length = 95	Back alignment and structure

>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens} Length = 164	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		509
2vfk_A		205	AKAP18 delta; APO, hydrolase; HET: AMP; 1.50A {Hom	99.97
1vgj_A		184	Hypothetical protein PH0099; alpha+beta, LIGT-like	99.95
1iuh_A		198	2'-5' RNA ligase; riken structural genomics/proteo	99.92
2d4g_A		171	Hypothetical protein BSU11850; beta barrel, alpha	99.84
1jh6_A		189	Cyclic phosphodiesterase; ADP-ribose 1'',2''-cycli	99.77
2cte_A		94	Vigilin; K homology type I domain, RNA-binding, ce	99.48
2dgr_A		83	Ring finger and KH domain-containing protein 1; st	99.45
2ctl_A		97	Vigilin; K homology type I domain, RNA-binding, ce	99.39
1vig_A		71	Vigilin; RNA-binding protein, ribonucleoprotein; N	99.37
2ctj_A		95	Vigilin; K homology type I domain, RNA-binding, ce	99.35
2ctm_A		95	Vigilin; K homology type I domain, RNA-binding, ce	99.35
2ctk_A		104	Vigilin; K homology type I domain, RNA-binding, ce	99.33
2ctf_A		102	Vigilin; K homology type I domain, RNA-binding, ce	99.28
1zzk_A		82	Heterogeneous nuclear ribonucleoprotein K; KH domi	99.23
2opv_A		85	KHSRP protein; KH domain, RNA binding protein, KSR	99.21
1wvn_A		82	Poly(RC)-binding protein 1; KH domain, RNA binding	99.19
1x4n_A		92	FAR upstream element binding protein 1; KH domain,	99.19
1dtj_A		76	RNA-binding neurooncological ventral antigen 2; KH	99.18
1x4m_A		94	FAR upstream element binding protein 1; KH domain,	99.17
2axy_A		73	Poly(RC)-binding protein 2; protein-DNA complex, D	99.17
1j5k_A		89	Heterogeneous nuclear ribonucleoprotein K; single-	99.16
2jzx_A		160	Poly(RC)-binding protein 2; PCBP2, KH domains, RNA	99.15
2p2r_A		76	Poly(RC)-binding protein 2; protein-DNA complex, R	99.15
1ec6_A		87	RNA-binding protein NOVA-2; KH domain, alpha-beta	99.14
3krm_A		163	Insulin-like growth factor 2 mRNA-binding protein	99.12
1we8_A		104	Tudor and KH domain containing protein; structural	99.11
2hh3_A		106	KH-type splicing regulatory protein; KH-RNA bindin	99.1
2anr_A		178	Neuro-oncological ventral antigen 1; protein-RNA c	99.1
1j4w_A		174	FUSE binding protein; single-stranded DNA binding	99.09
3n89_A		376	Defective in GERM LINE development protein 3, ISO;	99.07
2jvz_A		164	KH type-splicing, FAR upstream element-binding pro	99.05
2hh2_A		107	KH-type splicing regulatory protein; KH-RNA bindin	99.04
1k1g_A		131	SF1-BO isoform; splicing, branch point sequence, p	99.03
3krm_A		163	Insulin-like growth factor 2 mRNA-binding protein	98.9
2yqr_A		119	KIAA0907 protein; structure genomics, KH domain, s	98.9
2cpq_A		91	FragIle X mental retardation syndrome related prot	98.84
2jvz_A		164	KH type-splicing, FAR upstream element-binding pro	98.84
2jzx_A		160	Poly(RC)-binding protein 2; PCBP2, KH domains, RNA	98.78
2anr_A		178	Neuro-oncological ventral antigen 1; protein-RNA c	98.71
1j4w_A		174	FUSE binding protein; single-stranded DNA binding	98.68
3n89_A		376	Defective in GERM LINE development protein 3, ISO;	98.68
2bl5_A		140	MGC83862 protein, quaking protein; STAR proteins,	98.57
2qnd_A		144	FMR1 protein; KH domain, eukaryotic KH domains, ta	98.55
2e3u_A		219	PH-DIM2P, hypothetical protein PH1566; PRE-ribosom	98.39
3u1k_A		630	Polyribonucleotide nucleotidyltransferase 1, MITO;	98.19
2qnd_A		144	FMR1 protein; KH domain, eukaryotic KH domains, ta	98.15
2e3u_A		219	PH-DIM2P, hypothetical protein PH1566; PRE-ribosom	97.91
1tua_A		191	Hypothetical protein APE0754; structural genomics,	97.75
1tua_A		191	Hypothetical protein APE0754; structural genomics,	97.57
4aid_A		726	Polyribonucleotide nucleotidyltransferase; transfe	97.49
2fsq_A		243	ATU0111 protein; alpha-beta barrel, structural gen	96.98
3v69_A		140	Protein filia; RNA-binding, embryogenesis, KH doma	96.96
3cdi_A		723	Polynucleotide phosphorylase; mRNA turnover, RNAse	95.33
1e3p_A		757	Guanosine pentaphosphate synthetase; polyribonucle	95.05
2z0s_A		235	Probable exosome complex RNA-binding protein 1; al	81.06

>2vfk_A AKAP18 delta; APO, hydrolase; HET: AMP; 1.50A {Homo sapiens} PDB: 2vfl_A* 2vfy_A	Back alignment and structure

Probab=99.97  E-value=4.2e-31  Score=251.78  Aligned_cols=203  Identities=21%  Similarity=0.379  Sum_probs=163.1

Q ss_pred             ccCCceEEEEccCCcchhHHHHhhccCcccccccccCCCCCCCCCCCCcccccCCCCceEEeeccccCCHHHHHHHHHHH
Q 010498          280 VDQEHKVAVELNIGDNSERVKVDRTSIPIVGYEAKASRPSTSSDLGIDKSIFIKPKTFHLTVLMLKLWNKDRVNAATNVL  359 (509)
Q Consensus       280 ~rp~~FVAv~l~~~~~~~~v~~~q~~i~~~~~~~~~~r~~~~~~~Gld~~~fv~p~~LHLTL~fLgl~dee~v~~a~~aL  359 (509)
                      +++++||||.++++++.+.|..+|+.+.-             .++|++ ..|++++++||||.|||++++++++++.++|
T Consensus         1 ~~~r~Fial~~~~~~~~~~l~~~~~~l~~-------------~~~~~~-~~~v~~~~~HiTL~flg~~~~~~~~~l~~~l   66 (205)
T 2vfk_A            1 YQPNYFLSIPITNKKITAGIKVLQNSILR-------------QDNRLT-KAMVGDGSFHITLLVMQLLNEDEVNIGTDAL   66 (205)
T ss_dssp             CCCCEEEEEECCCHHHHHHHHHHHHHHHH-------------HCGGGG-GGBCCTTCCEEEEEEECCCSHHHHHHHHHHH
T ss_pred             CCCCEEEEEEcCCHHHHHHHHHHHHHHHh-------------cCcchH-HHhCCcCccEEEEEEEEcCCHHHHHHHHHHH
Confidence            46899999999987899999999998730             011222 3799999999999999999999999999999


Q ss_pred             HHhHHhhhhhcCCCCeEEEEceeccCCCCCCCceEEEEeeeccCChhHHHHHHHHHHHHHHHCCCccccCCCCCceeeEE
Q 010498          360 KSISSKVMDALDNRPLFIRLKGLDLMRGSKDKARILYAPVEEIGDGDRLLHACQVIIDAFNEAGLVFHRDYNKKLKLHAT  439 (509)
Q Consensus       360 ~~i~~~i~~~L~~~pf~L~l~GLg~F~~dp~~pRVLyagV~~~~~~~~L~~L~~~L~~~f~~~Gl~~e~~~~r~fkPHiT  439 (509)
                      .++...+.+++..+||.|+|.|+|+|++     +|||+++.+.++.+.|.+|++.|.+.|..+|+...  +.++|+||||
T Consensus        67 ~~~~~~~~~~~~~~pf~l~l~g~~~F~~-----~vl~~~v~~~~~~~~L~~L~~~l~~~~~~~g~~~~--~~~~f~PHiT  139 (205)
T 2vfk_A           67 LELKPFVEEILEGKHLTLPFHGIGTFQG-----QVGFVKLADGDHVSALLEIAETAKRTFQEKGILAG--ESRTFKPHLT  139 (205)
T ss_dssp             HHHHHHHHHHTTTSCCEEEEEEEEEETT-----TEEEEEECCSHHHHHHHHHHHHHHHHHHTTTCCBC--CSSCCCCCEE
T ss_pred             HHHHHHHHHHhCCCCcEEEEechhhCCC-----cEEEEeecccccHHHHHHHHHHHHHHHHHcCCCcC--CCCCcceEEE
Confidence            9987666666767999999999999987     79999998532347899999999999999999542  2689999999


Q ss_pred             eeeecccccccCCCccccccHHHHHHHhCCCccccEEecEEEEEeee-cCCCCCceeEEEEEeCCCC
Q 010498          440 LMNIRHKKRRKGTRRVDYFDARDIFKQFGSKEWGEYLIKEAHLSQRF-VYDESGFYHCCASIPFPEN  505 (509)
Q Consensus       440 LaR~k~~~~~~~~~~~~~fda~~il~~~~d~~fG~~~V~eI~Ls~l~-~~~~~g~Y~~i~si~L~~~  505 (509)
                      |||.++...... .....++ .++++.+.++.||.|.|++|+|+++. ..+.+|+|+++++++|++.
T Consensus       140 lar~~~~~~~~~-~~~~~~~-~~~l~~~~~~~~~~~~v~~i~L~~~~~~~~~~g~Y~~~~~~~L~~~  204 (205)
T 2vfk_A          140 FMKLSKAPMLWK-KGVRKIE-PGLYEQFIDHRFGEEILYQIDLCSMLKKKQSNGYYHCESSIVIGEK  204 (205)
T ss_dssp             EEEGGGCHHHHH-TTCSSCC-GGGGGGGTTCEEEEEECCEEEEEESSSCCCTTSCCCEEEEEECSSC
T ss_pred             EEecccchhhhh-ccccccC-HHHHHHhcCCcCcEEEeCEEEEEEcCCCCCCCCcEEEEEEEecCCC
Confidence            999865310000 0011233 36788899999999999999998865 4456899999999999865

PyMOL of 2vfk

>1vgj_A Hypothetical protein PH0099; alpha+beta, LIGT-like, structural genomics, ligase; 1.94A {Pyrococcus horikoshii} PDB: 1vdx_A 2fyh_A	Back alignment and structure

>1iuh_A 2'-5' RNA ligase; riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: d.61.1.2	Back alignment and structure

>2d4g_A Hypothetical protein BSU11850; beta barrel, alpha helix, structural genomics, unknown function; 2.30A {Bacillus subtilis}	Back alignment and structure

>1jh6_A Cyclic phosphodiesterase; ADP-ribose 1'',2''-cyclic phosphate, RNA processing, 2',3'-C nucleotide phosphodiesterase, hydrolase; 1.80A {Arabidopsis thaliana} SCOP: d.61.1.1 PDB: 1fsi_A 1jh7_A*	Back alignment and structure

>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1	Back alignment and structure

>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1	Back alignment and structure

>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A	Back alignment and structure

>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1	Back alignment and structure

>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1	Back alignment and structure

>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1	Back alignment and structure

>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1	Back alignment and structure

>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A	Back alignment and structure

>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}	Back alignment and structure

>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1	Back alignment and structure

>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A	Back alignment and structure

>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A	Back alignment and structure

>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1	Back alignment and structure

>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*	Back alignment and structure

>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A	Back alignment and structure

>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}	Back alignment and structure

>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}	Back alignment and structure

>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1	Back alignment and structure

>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}	Back alignment and structure

>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1	Back alignment and structure

>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}	Back alignment and structure

>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*	Back alignment and structure

>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1	Back alignment and structure

>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}	Back alignment and structure

>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}	Back alignment and structure

>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}	Back alignment and structure

>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1	Back alignment and structure

>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}	Back alignment and structure

>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1	Back alignment and structure

>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}	Back alignment and structure

>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}	Back alignment and structure

>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*	Back alignment and structure

>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1	Back alignment and structure

>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}	Back alignment and structure

>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1	Back alignment and structure

>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A	Back alignment and structure

>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B	Back alignment and structure

>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}	Back alignment and structure

>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A	Back alignment and structure

>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B	Back alignment and structure

>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1	Back alignment and structure

>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1	Back alignment and structure

>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A	Back alignment and structure

>2fsq_A ATU0111 protein; alpha-beta barrel, structural genomics, PSI, protein structu initiative, midwest center for structural genomics; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: d.61.1.4	Back alignment and structure

>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}	Back alignment and structure

>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A	Back alignment and structure

>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A	Back alignment and structure

>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		509
d2ctea1		81	d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [T	3e-10
d2ctka1		91	d.51.1.1 (A:8-98) Vigilin {Human (Homo sapiens) [T	8e-10
d1viga_		71	d.51.1.1 (A:) Vigilin {Human (Homo sapiens) [TaxId	6e-09
d2ctma1		81	d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [T	1e-08
d2ctla1		84	d.51.1.1 (A:8-91) Vigilin {Human (Homo sapiens) [T	1e-08
d2je6i3		69	d.51.1.1 (I:153-221) Exosome complex RNA-binding p	2e-08
d1x4na1		79	d.51.1.1 (A:8-86) Far upstream binding element, FB	5e-08
d1j4wa1		74	d.51.1.1 (A:1-74) Far upstream binding element, FB	6e-08
d1x4ma1		81	d.51.1.1 (A:8-88) Far upstream binding element, FB	1e-07
d1we8a_		104	d.51.1.1 (A:) Tudor and KH domain containing prote	4e-07
d1zzka1		75	d.51.1.1 (A:11-85) HnRNP K, KH3 {Human (Homo sapie	6e-07
d2ctja1		82	d.51.1.1 (A:8-89) Vigilin {Human (Homo sapiens) [T	9e-07
d2ba0a3		84	d.51.1.1 (A:136-219) Exosome complex RNA-binding p	1e-06
d2ctfa1		90	d.51.1.1 (A:7-96) Vigilin {Human (Homo sapiens) [T	4e-06
d1wvna1		70	d.51.1.1 (A:5-74) Poly(RC)-binding protein 1 {Huma	3e-05
d2z0sa2		87	d.51.1.1 (A:148-234) Exosome complex RNA-binding p	3e-05
d2axya1		71	d.51.1.1 (A:11-81) Poly(RC)-binding protein 2 {Hum	4e-05
d1tuaa1		84	d.51.1.1 (A:1-84) Hypothetical protein APE0754 {Ae	5e-05
d1j4wa2		71	d.51.1.1 (A:104-174) Far upstream binding element,	2e-04
d1dtja_		74	d.51.1.1 (A:) Neuro-oncological ventral antigen 2,	3e-04
d1iuha_		183	d.61.1.2 (A:) 2'-5' RNA ligase LigT {Thermus therm	0.004

>d2ctea1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Length = 81	Back information, alignment and structure


class: Alpha and beta proteins (a+b)
fold: Eukaryotic type KH-domain (KH-domain type I)
superfamily: Eukaryotic type KH-domain (KH-domain type I)
family: Eukaryotic type KH-domain (KH-domain type I)
domain: Vigilin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (131), Expect = 3e-10
 Identities = 17/69 (24%), Positives = 30/69 (43%)

Query: 148 RHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKAS 207
           + S +V +     RF+ GK G   +  E +   KI +P      + I    + + + KA 
Sbjct: 9   QASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPDDPSNQIKITGTKEGIEKAR 68

Query: 208 EKIQAIIAE 216
            ++  I AE
Sbjct: 69  HEVLLISAE 77

PyMOL of d2ctea1

>d2ctka1 d.51.1.1 (A:8-98) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Length = 91	Back information, alignment and structure

>d1viga_ d.51.1.1 (A:) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Length = 71	Back information, alignment and structure

>d2ctma1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Length = 81	Back information, alignment and structure

>d2ctla1 d.51.1.1 (A:8-91) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Length = 84	Back information, alignment and structure

>d2je6i3 d.51.1.1 (I:153-221) Exosome complex RNA-binding protein 1, ECR1 {Sulfolobus solfataricus [TaxId: 2287]} Length = 69	Back information, alignment and structure

>d1x4na1 d.51.1.1 (A:8-86) Far upstream binding element, FBP {Mouse (Mus musculus) [TaxId: 10090]} Length = 79	Back information, alignment and structure

>d1j4wa1 d.51.1.1 (A:1-74) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]} Length = 74	Back information, alignment and structure

>d1x4ma1 d.51.1.1 (A:8-88) Far upstream binding element, FBP {Mouse (Mus musculus) [TaxId: 10090]} Length = 81	Back information, alignment and structure

>d1we8a_ d.51.1.1 (A:) Tudor and KH domain containing protein, Tdrkh {Mouse (Mus musculus) [TaxId: 10090]} Length = 104	Back information, alignment and structure

>d1zzka1 d.51.1.1 (A:11-85) HnRNP K, KH3 {Human (Homo sapiens) [TaxId: 9606]} Length = 75	Back information, alignment and structure

>d2ctja1 d.51.1.1 (A:8-89) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Length = 82	Back information, alignment and structure

>d2ba0a3 d.51.1.1 (A:136-219) Exosome complex RNA-binding protein 1, ECR1 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 84	Back information, alignment and structure

>d2ctfa1 d.51.1.1 (A:7-96) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Length = 90	Back information, alignment and structure

>d1wvna1 d.51.1.1 (A:5-74) Poly(RC)-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 70	Back information, alignment and structure

>d2z0sa2 d.51.1.1 (A:148-234) Exosome complex RNA-binding protein 1, ECR1 {Aeropyrum pernix [TaxId: 56636]} Length = 87	Back information, alignment and structure

>d2axya1 d.51.1.1 (A:11-81) Poly(RC)-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 71	Back information, alignment and structure

>d1tuaa1 d.51.1.1 (A:1-84) Hypothetical protein APE0754 {Aeropyrum pernix [TaxId: 56636]} Length = 84	Back information, alignment and structure

>d1j4wa2 d.51.1.1 (A:104-174) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]} Length = 71	Back information, alignment and structure

>d1dtja_ d.51.1.1 (A:) Neuro-oncological ventral antigen 2, nova-2, KH3 {Human (Homo sapiens) [TaxId: 9606]} Length = 74	Back information, alignment and structure

>d1iuha_ d.61.1.2 (A:) 2'-5' RNA ligase LigT {Thermus thermophilus [TaxId: 274]} Length = 183	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		509
d1iuha_		183	2'-5' RNA ligase LigT {Thermus thermophilus [TaxId	99.92
d2ctea1		81	Vigilin {Human (Homo sapiens) [TaxId: 9606]}	99.51
d2ctma1		81	Vigilin {Human (Homo sapiens) [TaxId: 9606]}	99.49
d2ctla1		84	Vigilin {Human (Homo sapiens) [TaxId: 9606]}	99.44
d1viga_		71	Vigilin {Human (Homo sapiens) [TaxId: 9606]}	99.44
d1jh6a_		181	tRNA splicing product Appr>p cyclic nucleotide pho	99.43
d2ctka1		91	Vigilin {Human (Homo sapiens) [TaxId: 9606]}	99.42
d2ctja1		82	Vigilin {Human (Homo sapiens) [TaxId: 9606]}	99.4
d2ctfa1		90	Vigilin {Human (Homo sapiens) [TaxId: 9606]}	99.39
d1j4wa1		74	Far upstream binding element, FBP {Human (Homo sap	99.34
d1x4na1		79	Far upstream binding element, FBP {Mouse (Mus musc	99.29
d1zzka1		75	HnRNP K, KH3 {Human (Homo sapiens) [TaxId: 9606]}	99.26
d1x4ma1		81	Far upstream binding element, FBP {Mouse (Mus musc	99.21
d1wvna1		70	Poly(RC)-binding protein 1 {Human (Homo sapiens) [	99.2
d2axya1		71	Poly(RC)-binding protein 2 {Human (Homo sapiens) [	99.2
d2ba0a3		84	Exosome complex RNA-binding protein 1, ECR1 {Archa	99.17
d1we8a_		104	Tudor and KH domain containing protein, Tdrkh {Mou	99.17
d2cpqa1		78	Fragile X mental retardation syndrome related prot	99.15
d1dtja_		74	Neuro-oncological ventral antigen 2, nova-2, KH3 {	99.15
d1j4wa2		71	Far upstream binding element, FBP {Human (Homo sap	99.12
d2je6i3		69	Exosome complex RNA-binding protein 1, ECR1 {Sulfo	99.12
d2z0sa2		87	Exosome complex RNA-binding protein 1, ECR1 {Aerop	99.04
d1tuaa1		84	Hypothetical protein APE0754 {Aeropyrum pernix [Ta	98.91
d1k1ga_		122	RNA splicing factor 1 {Human (Homo sapiens) [TaxId	98.62
d2bl5a1		134	Quaking protein A (Xqua) {African clawed frog (Xen	98.4
d1e3ha4		54	Polynucleotide phosphorylase/guanosine pentaphosph	98.33
d1tuaa2		104	Hypothetical protein APE0754 {Aeropyrum pernix [Ta	98.26
d2fsqa1		232	Putative phosphoesterase Atu0111 {Agrobacterium tu	97.13
d2ja9a2		85	Ribosomal RNA-processing protein 40, RRP40 {Saccha	95.6
d1hh2p3		68	Transcription factor NusA, C-terminal domains {The	90.7
d2asba3		67	Transcription factor NusA, C-terminal domains {Myc	90.31

>d1iuha_ d.61.1.2 (A:) 2'-5' RNA ligase LigT {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: LigT-like
superfamily: LigT-like
family: 2'-5' RNA ligase LigT
domain: 2'-5' RNA ligase LigT
species: Thermus thermophilus [TaxId: 274]

Probab=99.92  E-value=1.3e-24  Score=201.41  Aligned_cols=174  Identities=17%  Similarity=0.187  Sum_probs=134.8

Q ss_pred             ceEEEEccCCcchhHHHHhhccCcccccccccCCCCCCCCCCCCcccccCCCCceEEeeccccCCHHHHHHHHHHHHHhH
Q 010498          284 HKVAVELNIGDNSERVKVDRTSIPIVGYEAKASRPSTSSDLGIDKSIFIKPKTFHLTVLMLKLWNKDRVNAATNVLKSIS  363 (509)
Q Consensus       284 ~FVAv~l~~~~~~~~v~~~q~~i~~~~~~~~~~r~~~~~~~Gld~~~fv~p~~LHLTL~fLgl~dee~v~~a~~aL~~i~  363 (509)
                      .||||.++ +++.+.+..+++.+.              ...+   ..|+++++|||||.|+|.+++++++.+.++|+++.
T Consensus         3 lFial~~p-~~~~~~l~~~~~~l~--------------~~~~---~r~~~~~~lHiTL~flg~~~~~~~~~l~~~l~~~~   64 (183)
T d1iuha_           3 LFYAVFLP-EEVRAALVEAQTKVR--------------PFRG---WKPVPPHQLHLTLLFLGERPEEELPDYLALGHRLA   64 (183)
T ss_dssp             EEEEEECC-HHHHHHHHHHHGGGT--------------TCTT---EEECCGGGCEEEEEEEEECCGGGHHHHHHHHHHHH
T ss_pred             EEEEEcCC-HHHHHHHHHHHHHcc--------------cccc---cccCCcccCEEEEEcCCCCCHHHHHHHHHHHHHHH
Confidence            69999995 688999999998773              1222   26999999999999999999999999999999874


Q ss_pred             HhhhhhcCCCCeEEEEceeccCCCCCCCceEEEEeeeccCChhHHHHHHHHHHHHHHHC------CCccccCCCCCceee
Q 010498          364 SKVMDALDNRPLFIRLKGLDLMRGSKDKARILYAPVEEIGDGDRLLHACQVIIDAFNEA------GLVFHRDYNKKLKLH  437 (509)
Q Consensus       364 ~~i~~~L~~~pf~L~l~GLg~F~~dp~~pRVLyagV~~~~~~~~L~~L~~~L~~~f~~~------Gl~~e~~~~r~fkPH  437 (509)
                      .      ...||.++|.|+|+|++ +++++|+|+.+..    +.+.+|++.|.+.+.++      |+..+   .++|+||
T Consensus        65 ~------~~~pf~l~~~~~~~f~~-~~~~~v~~~~~~~----~~~~~L~~~l~~~l~~~~~~~~~~~~~~---~r~f~PH  130 (183)
T d1iuha_          65 R------LEAPFRARLRGTGYFPN-EGTPRVWFAKAEA----EGFLRLAEGLRAGVEELLGEEAVRIPGW---DKPFKPH  130 (183)
T ss_dssp             H------HSCCEEEEEEEEEEESS-SSSCSEEEEEEEC----HHHHHHHHHHHHHHHHHHGGGGGGSTTT---TSCCCCE
T ss_pred             h------cCCCeEEEecccccCCC-CCCcEEEEEecCC----hHHHHHHHHHHHHHHHHhhhhccCCCcc---CCCcCCC
Confidence            3      25899999999999997 8899999998874    45665666666655543      45554   6899999


Q ss_pred             EEeeeecccccccCCCccccccHHHHHHHhCCCcc-ccEEecEEEEEeeecCCCCCceeEEEEEeCCCCC
Q 010498          438 ATLMNIRHKKRRKGTRRVDYFDARDIFKQFGSKEW-GEYLIKEAHLSQRFVYDESGFYHCCASIPFPENM  506 (509)
Q Consensus       438 iTLaR~k~~~~~~~~~~~~~fda~~il~~~~d~~f-G~~~V~eI~Ls~l~~~~~~g~Y~~i~si~L~~~~  506 (509)
                      |||+|.+.....                 +....+ ..|.|++|+|.++.....|+.|+++++|+|.|++
T Consensus       131 ITlar~~~~~~~-----------------~~~~~~~~~~~v~~~~L~~S~~~~~g~~Y~~l~~~~L~g~~  183 (183)
T d1iuha_         131 ITLARRKAPAPR-----------------VPPVLFGLEWPVEGFALVRSELKPKGPVYTVLEKFSLRGEH  183 (183)
T ss_dssp             EEEEEESSCCCC-----------------CCCCCCCEEEEECEEEEEEEEECSSSEEEEEEEEEECCCCC
T ss_pred             EEEEeEcCCchh-----------------hhcccCCceEEeeEEEEEEEeccCCCCcceEEEEEeCCCCC
Confidence            999997543210                 011112 3689999999776555567899999999999864

PyMOL of d1iuha_

>d2ctea1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ctma1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ctla1 d.51.1.1 (A:8-91) Vigilin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1viga_ d.51.1.1 (A:) Vigilin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1jh6a_ d.61.1.1 (A:) tRNA splicing product Appr>p cyclic nucleotide phosphodiesterase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

>d2ctka1 d.51.1.1 (A:8-98) Vigilin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ctja1 d.51.1.1 (A:8-89) Vigilin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ctfa1 d.51.1.1 (A:7-96) Vigilin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1j4wa1 d.51.1.1 (A:1-74) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1x4na1 d.51.1.1 (A:8-86) Far upstream binding element, FBP {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1zzka1 d.51.1.1 (A:11-85) HnRNP K, KH3 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1x4ma1 d.51.1.1 (A:8-88) Far upstream binding element, FBP {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1wvna1 d.51.1.1 (A:5-74) Poly(RC)-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2axya1 d.51.1.1 (A:11-81) Poly(RC)-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ba0a3 d.51.1.1 (A:136-219) Exosome complex RNA-binding protein 1, ECR1 {Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure

>d1we8a_ d.51.1.1 (A:) Tudor and KH domain containing protein, Tdrkh {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d2cpqa1 d.51.1.1 (A:212-289) Fragile X mental retardation syndrome related protein 1, FXR1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1dtja_ d.51.1.1 (A:) Neuro-oncological ventral antigen 2, nova-2, KH3 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1j4wa2 d.51.1.1 (A:104-174) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2je6i3 d.51.1.1 (I:153-221) Exosome complex RNA-binding protein 1, ECR1 {Sulfolobus solfataricus [TaxId: 2287]}	Back information, alignment and structure

>d2z0sa2 d.51.1.1 (A:148-234) Exosome complex RNA-binding protein 1, ECR1 {Aeropyrum pernix [TaxId: 56636]}	Back information, alignment and structure

>d1tuaa1 d.51.1.1 (A:1-84) Hypothetical protein APE0754 {Aeropyrum pernix [TaxId: 56636]}	Back information, alignment and structure

>d1k1ga_ d.51.1.1 (A:) RNA splicing factor 1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2bl5a1 d.51.1.1 (A:1-134) Quaking protein A (Xqua) {African clawed frog (Xenopus laevis) [TaxId: 8355]}	Back information, alignment and structure

>d1e3ha4 d.52.3.1 (A:579-632) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 6 {Streptomyces antibioticus [TaxId: 1890]}	Back information, alignment and structure

>d1tuaa2 d.51.1.1 (A:85-188) Hypothetical protein APE0754 {Aeropyrum pernix [TaxId: 56636]}	Back information, alignment and structure

>d2fsqa1 d.61.1.4 (A:6-237) Putative phosphoesterase Atu0111 {Agrobacterium tumefaciens [TaxId: 358]}	Back information, alignment and structure

>d2ja9a2 d.51.1.1 (A:152-236) Ribosomal RNA-processing protein 40, RRP40 {Saccharomyces cerevisiae [TaxId: 4932]}	Back information, alignment and structure

>d1hh2p3 d.52.3.1 (P:277-344) Transcription factor NusA, C-terminal domains {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d2asba3 d.52.3.1 (A:263-329) Transcription factor NusA, C-terminal domains {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure