Citrus Sinensis ID: 010536

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------51
Protein Sequence
MSETYTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQPMEL
Secondary Structure (PSIPRED)
cccEEEEEccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccEEEEEcccccccccEEEEHHHHHHHHHHHHHHHHHcccccccEEEEEccccHHHHHHHHHHHHcccEEEEccccccHHHHHHHHHHccccEEEEccccHHHHHHcccccccccEEEEEccccccHHHHHHHHcccEEEEHHHHHHcccccccccccccccEEEEEEccccccccccEEEcHHHHHHHHHHHHHHHHHcccccccccEEEEEccHHHHHHHHHHHHHHHcccEEEEccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccEEEEEEccccccHHHHHHHHHHHcccEEEEccccccccccccccccccccccccccccccEEEEEEEcccccccccccccccEEEEcccccccccccccccccccccccEEccccEEEEccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEcccccccccccccccEEEccccccccccccccccHHHHHHHHHHHHccccccccEEcccccccccEEEEcHHHHHHHHHHHHHHHHHcccccccEEEEEEcccHHHHHHHHHHHHcccEEEcccccccHHHHEEEEEcccEEEEEEccHHHHHHHHHHccccccEEEEEEEccccHHHHHHHHHcccEEEEHHHHHHHccccccccccccccEEEEEEEcccccccccEEEccHHHHHHHHHHHHHHHHccccccHccEEEEHHHHHHHHHHHHHHHHHHcccEEEEccccHHHHHHHHHHcccccccHcHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccEEEEEEEccccccHHHHHHHHHHHccEEEEccccccccccEEEEccccccccccccccccccEEEEEEcccccccccccccccEEEEEcccEEEcccccHHHHHHHHHccccccccccccccccc
Coil and Loop (DISEMBL)
msetytvkveearpaadgkpsggpvyrciyakdgllespaglespwqffcdsakripnnqmlggrkvsdgkvgpyVWLTYQEVYDAAIRFGsamrsrgvnpgdrcgiygsncPEWIIAMEACNSqaityvplydtlgANAVEFIINHAEVSIAFVqenkipsilsclprcCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLqlgtldcelppkkktnistimytsgttgepkgvvlTNQAIVAEVLSVDQMFVVTGkvcseedtyfsflplahiYDQIIETHcihkgcsigfwrgDVRYLMEDIQElkptmfsgvprvydRIYTGIsnkissggaLSKKLFEFAYNYklgnmkkgmpqnkaapllDSLVFSKIREAFGGRLQAMlsgaaplpihVEEFlrvtsgapltqgygltescsgcfTSLADVFNmigtvgvpMTTVEARLesvpemgydalssvprgeiclrgntlfsgyykrpdlteevivdgwfhtgdigewqpmel
Flexible Loop (DISEMBL)
msetytvkveearpaadgkpsggpVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIpnnqmlggrkvsdgkvGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMytsgttgepkgVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQElkptmfsgvpRVYDRIYTGISnkissggalsKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGydalssvprgeicLRGNTLFSGYYKRPDLTEEVIVDGWFHTgdigewqpmel
Low Complexity Region (SEG)
MSETYTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQPMEL
Disordered region (IsUnstruct)
***********************PVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANV*********ELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKG****KAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEW*****
Disordered Region (DISOPRED)
***TYTV*****************VYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQ***********K*TNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQPME*
Disordered Region (DISEMBL)
********VEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANV***********GVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQPMEL
Disordered Region (DISPRO)
**ETYTVKVEEA**********GPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQPM**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSETYTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQPMEL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	508	2.2.26 [Sep-21-2011]
Q9XIA9	665	Long chain acyl-CoA synth	yes	no	0.976	0.745	0.670	0.0
Q9C7W4	665	Long chain acyl-CoA synth	no	no	0.986	0.753	0.562	1e-173
Q9T0A0	666	Long chain acyl-CoA synth	no	no	0.992	0.756	0.556	1e-171
Q9T009	666	Long chain acyl-CoA synth	no	no	0.986	0.752	0.557	1e-169
O22898	660	Long chain acyl-CoA synth	no	no	0.990	0.762	0.482	1e-141
Q8LKS5	700	Long chain acyl-CoA synth	no	no	0.875	0.635	0.404	2e-89
Q8LPS1	701	Long chain acyl-CoA synth	no	no	0.858	0.621	0.420	1e-88
Q1ZXQ4	673	Fatty acyl-CoA synthetase	yes	no	0.940	0.710	0.350	3e-81
Q55DR6	667	Fatty acyl-CoA synthetase	no	no	0.852	0.649	0.374	6e-79
P41216	699	Long-chain-fatty-acid--Co	yes	no	0.844	0.613	0.360	6e-75

>sp|Q9XIA9|LACS2_ARATH Long chain acyl-CoA synthetase 2 OS=Arabidopsis thaliana GN=LACS2 PE=2 SV=1

 Score =  717 bits (1850), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/498 (67%), Positives = 399/498 (80%), Gaps = 2/498 (0%)

Query: 9   VEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVS 68
           VEE RPA    PS GPVYRC YAKDGLL+ P  ++SPWQFF ++ K+ PN QMLG R  +
Sbjct: 11  VEEGRPATAEHPSAGPVYRCKYAKDGLLDLPTDIDSPWQFFSEAVKKYPNEQMLGQRVTT 70

Query: 69  DGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAIT 128
           D KVGPY W+TY+E +DAAIR GSA+RSRGV+PG  CGIYG+NCPEWIIAMEAC SQ IT
Sbjct: 71  DSKVGPYTWITYKEAHDAAIRIGSAIRSRGVDPGHCCGIYGANCPEWIIAMEACMSQGIT 130

Query: 129 YVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQK 188
           YVPLYD+LG NAVEFIINHAEVS+ FVQE  + SILSC   C   LKTIVSF  VSS+QK
Sbjct: 131 YVPLYDSLGVNAVEFIINHAEVSLVFVQEKTVSSILSCQKGCSSNLKTIVSFGEVSSTQK 190

Query: 189 KEAEELGVSCFSWEEFLQLGTLD-CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVA 247
           +EA+   VS FSW EF  +G LD   LP K+KT+I TIMYTSGTTGEPKGV+L N AI  
Sbjct: 191 EEAKNQCVSLFSWNEFSLMGNLDEANLPRKRKTDICTIMYTSGTTGEPKGVILNNAAISV 250

Query: 248 EVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMED 307
           +VLS+D+M  VT + C   D +FS+LPLAH YDQ++E + + +G S+G+WRGD+RYLM+D
Sbjct: 251 QVLSIDKMLEVTDRSCDTSDVFFSYLPLAHCYDQVMEIYFLSRGSSVGYWRGDIRYLMDD 310

Query: 308 IQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAP 367
           +Q LKPT+F GVPRVYD++Y GI  KIS+ G + KKLF+FAYNYKLGNM+KG  Q +A+P
Sbjct: 311 VQALKPTVFCGVPRVYDKLYAGIMQKISASGLIRKKLFDFAYNYKLGNMRKGFSQEEASP 370

Query: 368 LLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTS 427
            LD L+F KI+EA GGR   +LSGAAPLP HVEEFLR+   + L+QGYGLTESC G FT+
Sbjct: 371 RLDRLMFDKIKEALGGRAHMLLSGAAPLPRHVEEFLRIIPASNLSQGYGLTESCGGSFTT 430

Query: 428 LADVFNMIGTVGVPMTTVEARLESVPEMGYDALSS-VPRGEICLRGNTLFSGYYKRPDLT 486
           LA VF+M+GTVGVPM TVEARL SVPEMGYDA S+ VPRGEICLRGN++FSGY+KR DLT
Sbjct: 431 LAGVFSMVGTVGVPMPTVEARLVSVPEMGYDAFSADVPRGEICLRGNSMFSGYHKRQDLT 490

Query: 487 EEVIVDGWFHTGDIGEWQ 504
           ++V++DGWFHTGDIGEWQ
Sbjct: 491 DQVLIDGWFHTGDIGEWQ 508

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Acts in the cutin pathway. Preferentially uses palmitate, palmitoleate, oleate and linoleate. Required for repression of lateral root formation through its role in cutin biosynthesis and subsequent aerial tissues permeability.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: 3

>sp|Q9C7W4|LACS3_ARATH Long chain acyl-CoA synthetase 3 OS=Arabidopsis thaliana GN=LACS3 PE=2 SV=1

 Score =  609 bits (1570), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 283/503 (56%), Positives = 372/503 (73%), Gaps = 2/503 (0%)

Query: 5   YTVKVEEARPAADG-KPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLG 63
           Y V+VE+ +   DG  PS GPVYR IYAKDG  E P  L S W  F  S ++ PNN MLG
Sbjct: 6   YIVEVEKGKQGVDGGSPSVGPVYRSIYAKDGFPEPPDDLVSAWDIFRLSVEKSPNNPMLG 65

Query: 64  GRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACN 123
            R++ DGK G YVW TY+EV++  I+ G+++R+ GV  GD+CGIYG+N PEWII+MEACN
Sbjct: 66  RREIVDGKAGKYVWQTYKEVHNVVIKLGNSIRTIGVGKGDKCGIYGANSPEWIISMEACN 125

Query: 124 SQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANV 183
           +  +  VPLYDTLGA A+EFII HAEVS+AF +ENKI  +L   P+   YLK IVSF  V
Sbjct: 126 AHGLYCVPLYDTLGAGAIEFIICHAEVSLAFAEENKISELLKTAPKSTKYLKYIVSFGEV 185

Query: 184 SSSQKKEAEELGVSCFSWEEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTN 242
           +++Q+ EAE   ++ +SW++FL+LG     ELP K+++++ TIMYTSGTTG+PKGV+LTN
Sbjct: 186 TNNQRVEAERHRLTIYSWDQFLKLGEGKHYELPEKRRSDVCTIMYTSGTTGDPKGVLLTN 245

Query: 243 QAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVR 302
           ++I+  +  V ++     +  + +D Y S+LPLAHI+D++IE  CI++  SIGFWRGDV+
Sbjct: 246 ESIIHLLEGVKKLLKTIDEELTSKDVYLSYLPLAHIFDRVIEELCIYEAASIGFWRGDVK 305

Query: 303 YLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQ 362
            L+EDI  LKPT+F  VPRV +RIYTG+  K+S GG + KKLF FA+ YK  NM+KG P 
Sbjct: 306 ILIEDIAALKPTVFCAVPRVLERIYTGLQQKLSDGGFVKKKLFNFAFKYKHKNMEKGQPH 365

Query: 363 NKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCS 422
            +A+P+ D +VF K++E  GG ++ +LSGAAPL  H+E FLRV + A + QGYGLTESC 
Sbjct: 366 EQASPIADKIVFKKVKEGLGGNVRLILSGAAPLAAHIESFLRVVACAHVLQGYGLTESCG 425

Query: 423 GCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKR 482
           G F S+ +  +M+GTVG P+  V+ RLESVPEMGYDAL+S PRGEIC+RG TLFSGYYKR
Sbjct: 426 GTFVSIPNELSMLGTVGPPVPNVDIRLESVPEMGYDALASNPRGEICIRGKTLFSGYYKR 485

Query: 483 PDLTEEVIVDGWFHTGDIGEWQP 505
            DLT+EV +DGW HTGD+GEWQP
Sbjct: 486 EDLTQEVFIDGWLHTGDVGEWQP 508

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate and linoleate.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q9T0A0|LACS4_ARATH Long chain acyl-CoA synthetase 4 OS=Arabidopsis thaliana GN=LACS4 PE=2 SV=1

 Score =  600 bits (1547), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 281/505 (55%), Positives = 369/505 (73%), Gaps = 1/505 (0%)

Query: 2   SETYTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQM 61
            + Y  +VEE +  +DG+PS GPVYR I+AKDG  +   G++S W  F  S ++ PNN M
Sbjct: 4   QKKYIFQVEEGKEGSDGRPSVGPVYRSIFAKDGFPDPIEGMDSCWDVFRMSVEKYPNNPM 63

Query: 62  LGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121
           LG R++ DGK G YVW TYQEVYD  ++ G+++RS GV    +CGIYG+N PEWII+MEA
Sbjct: 64  LGRREIVDGKPGKYVWQTYQEVYDIVMKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEA 123

Query: 122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFA 181
           CN+  +  VPLYDTLGA+AVEFII+H+EVSI FV+E KI  +    P    Y+KT+VSF 
Sbjct: 124 CNAHGLYCVPLYDTLGADAVEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVSFG 183

Query: 182 NVSSSQKKEAEELGVSCFSWEEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGVVL 240
            VS  QK+EAE  G+  ++W+EFL+LG     +LP KKK++I TIMYTSGTTG+PKGV++
Sbjct: 184 GVSREQKEEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMI 243

Query: 241 TNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGD 300
           +N++IV  +  V ++     +  + +D Y S+LPLAHI+D++IE   I  G +IGFWRGD
Sbjct: 244 SNESIVTLIAGVIRLLKSANEALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGD 303

Query: 301 VRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGM 360
           V+ L+ED+ ELKPT+F  VPRV DR+Y+G+  K+S GG L K +F+ A++YK G MKKG 
Sbjct: 304 VKLLIEDLAELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFIFDSAFSYKFGYMKKGQ 363

Query: 361 PQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTES 420
              +A+PL D LVFSK+++  GG ++ +LSGAAPL  HVE FLRV +   + QGYGLTES
Sbjct: 364 SHVEASPLFDKLVFSKVKQGLGGNVRIILSGAAPLASHVESFLRVVACCHVLQGYGLTES 423

Query: 421 CSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYY 480
           C+G F SL D   M+GTVG P+  V+ RLESVPEM YDAL+S  RGEIC+RG TLFSGYY
Sbjct: 424 CAGTFVSLPDELGMLGTVGPPVPNVDIRLESVPEMEYDALASTARGEICIRGKTLFSGYY 483

Query: 481 KRPDLTEEVIVDGWFHTGDIGEWQP 505
           KR DLT+EV++DGW HTGD+GEWQP
Sbjct: 484 KREDLTKEVLIDGWLHTGDVGEWQP 508

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate and linoleate.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q9T009|LACS5_ARATH Long chain acyl-CoA synthetase 5 OS=Arabidopsis thaliana GN=LACS5 PE=2 SV=1

 Score =  596 bits (1537), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 280/502 (55%), Positives = 362/502 (72%), Gaps = 1/502 (0%)

Query: 5   YTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGG 64
           +  +VE A+ A DG PS GPVYR  +A++G      G++S W  F  + ++ PNN+MLG 
Sbjct: 7   FIFEVEAAKEATDGNPSVGPVYRSTFAQNGFPNPIDGIQSCWDIFRTAVEKYPNNRMLGR 66

Query: 65  RKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNS 124
           R++S+GK G YVW TY+EVYD  I+ G+++RS G+  G++CGIYG NC EWII+MEACN+
Sbjct: 67  REISNGKAGKYVWKTYKEVYDIVIKLGNSLRSCGIKEGEKCGIYGINCCEWIISMEACNA 126

Query: 125 QAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVS 184
             +  VPLYDTLGA AVEFII+HAEVSIAFV+E KIP +    P    Y+KT+VSF  V 
Sbjct: 127 HGLYCVPLYDTLGAGAVEFIISHAEVSIAFVEEKKIPELFKTCPNSTKYMKTVVSFGGVK 186

Query: 185 SSQKKEAEELGVSCFSWEEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQ 243
             QK+EAE+LG+   SW+EFL+LG     ELP KK ++I TIMYTSGTTG+PKGV+++N+
Sbjct: 187 PEQKEEAEKLGLVIHSWDEFLKLGEGKQYELPIKKPSDICTIMYTSGTTGDPKGVMISNE 246

Query: 244 AIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRY 303
           +IV     V           SE+D Y S+LPLAH++D+ IE   I  G SIGFWRGDV+ 
Sbjct: 247 SIVTITTGVMHFLGNVNASLSEKDVYISYLPLAHVFDRAIEECIIQVGGSIGFWRGDVKL 306

Query: 304 LMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQN 363
           L+ED+ ELKP++F  VPRV DR+YTG+  K+S GG   KK+F+ A++YK GNMKKG    
Sbjct: 307 LIEDLGELKPSIFCAVPRVLDRVYTGLQQKLSGGGFFKKKVFDVAFSYKFGNMKKGQSHV 366

Query: 364 KAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSG 423
            A+P  D LVF+K+++  GG ++ +LSGAAPL  H+E FLRV +   + QGYGLTESC+G
Sbjct: 367 AASPFCDKLVFNKVKQGLGGNVRIILSGAAPLASHIESFLRVVACCNVLQGYGLTESCAG 426

Query: 424 CFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRP 483
            F +  D  +M+GTVG P+  V+ RLESVPEM YDAL S PRGEIC+RG TLFSGYYKR 
Sbjct: 427 TFATFPDELDMLGTVGPPVPNVDIRLESVPEMNYDALGSTPRGEICIRGKTLFSGYYKRE 486

Query: 484 DLTEEVIVDGWFHTGDIGEWQP 505
           DLT+EV +DGW HTGD+GEWQP
Sbjct: 487 DLTKEVFIDGWLHTGDVGEWQP 508

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate and linoleate.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|O22898|LACS1_ARATH Long chain acyl-CoA synthetase 1 OS=Arabidopsis thaliana GN=LACS1 PE=2 SV=1

 Score =  501 bits (1290), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 243/504 (48%), Positives = 325/504 (64%), Gaps = 1/504 (0%)

Query: 3   ETYTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQML 62
           +++  KVEE     DGKPS GPVYR + ++ G     + + + W  F  S ++ P+N ML
Sbjct: 2   KSFAAKVEEGVKGIDGKPSVGPVYRNLLSEKGFPPIDSEITTAWDIFSKSVEKFPDNNML 61

Query: 63  GGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC 122
           G R++ D KVGPY+W TY+EVY+  ++ GSA+R+ G  PG R GIYG NCP+WIIAMEAC
Sbjct: 62  GWRRIVDEKVGPYMWKTYKEVYEEVLQIGSALRAAGAEPGSRVGIYGVNCPQWIIAMEAC 121

Query: 123 NSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFAN 182
            +  +  VPLYDTLG+ AV++I+ HAE+   FVQ+ KI  +L    +C   LK IVSF N
Sbjct: 122 AAHTLICVPLYDTLGSGAVDYIVEHAEIDFVFVQDTKIKGLLEPDCKCAKRLKAIVSFTN 181

Query: 183 VSSSQKKEAEELGVSCFSWEEFLQLGTLDCE-LPPKKKTNISTIMYTSGTTGEPKGVVLT 241
           VS     +A E+GV  +SW +FL +G    E   P K  NI TIMYTSGT+G+PKGVVLT
Sbjct: 182 VSDELSHKASEIGVKTYSWIDFLHMGREKPEDTNPPKAFNICTIMYTSGTSGDPKGVVLT 241

Query: 242 NQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDV 301
           +QA+   V+ +D          + +D Y SFLPLAHI D++ E +   KG S+G++ G++
Sbjct: 242 HQAVATFVVGMDLYMDQFEDKMTHDDVYLSFLPLAHILDRMNEEYFFRKGASVGYYHGNL 301

Query: 302 RYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMP 361
             L +DIQELKPT  +GVPRV++RI+ GI   +       + +F   Y +KL  + +G  
Sbjct: 302 NVLRDDIQELKPTYLAGVPRVFERIHEGIQKALQELNPRRRFIFNALYKHKLAWLNRGYS 361

Query: 362 QNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESC 421
            +KA+P+ D + F KIR+  GGR++ ++SG APL   +EEFLRVT    + QGYGLTE+ 
Sbjct: 362 HSKASPMADFIAFRKIRDKLGGRIRLLVSGGAPLSPEIEEFLRVTCCCFVVQGYGLTETL 421

Query: 422 SGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYK 481
            G      D   M+GTVG+P    E RLE V EMGYD L   P GEIC+RG  +FSGYYK
Sbjct: 422 GGTALGFPDEMCMLGTVGIPAVYNEIRLEEVSEMGYDPLGENPAGEICIRGQCMFSGYYK 481

Query: 482 RPDLTEEVIVDGWFHTGDIGEWQP 505
            P+LTEEV+ DGWFHTGDIGE  P
Sbjct: 482 NPELTEEVMKDGWFHTGDIGEILP 505

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Acts in both the wax and cutin pathways. Preferentially uses palmitate, palmitoleate, linoleate and eicosenoate. Seems to have a specific activity against very long-chain fatty acid (VLCFA) class with acids longer than 24 carbons (C(24)).

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q8LKS5|LACS7_ARATH Long chain acyl-CoA synthetase 7, peroxisomal OS=Arabidopsis thaliana GN=LACS7 PE=1 SV=2

 Score =  329 bits (844), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 187/462 (40%), Positives = 262/462 (56%), Gaps = 17/462 (3%)

Query: 49  FCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIY 108
           F  + +    N+ LG R  SDG +G Y W+TY E        GS +   GVN GD  G+Y
Sbjct: 90  FVHAVETYAENKYLGTRVRSDGTIGEYSWMTYGEAASERQAIGSGLLFHGVNQGDCVGLY 149

Query: 109 GSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLP 168
             N PEW++   AC + +   VPLYDTLG +AV+F++NHA +   F     +  +LS L 
Sbjct: 150 FINRPEWLVVDHACAAYSFVSVPLYDTLGPDAVKFVVNHANLQAIFCVPQTLNILLSFLA 209

Query: 169 RCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCE-LPPKKKTNISTIMY 227
                ++ IV                GV+  S+++ L  G        P K  +I+TI Y
Sbjct: 210 EIP-SIRLIVVVGGADEHLPSLPRGTGVTIVSYQKLLSQGRSSLHPFSPPKPEDIATICY 268

Query: 228 TSGTTGEPKGVVLTNQAIVAEVL--SVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIET 285
           TSGTTG PKGVVLT+  ++A V   SV+  F  +       D Y S+LPLAHIY++  + 
Sbjct: 269 TSGTTGTPKGVVLTHGNLIANVAGSSVEAEFFPS-------DVYISYLPLAHIYERANQI 321

Query: 286 HCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLF 345
             ++ G ++GF++GDV  LM+D   L+PT+F  VPR+Y+RIY GI++ + S G + K+LF
Sbjct: 322 MGVYGGVAVGFYQGDVFKLMDDFAVLRPTIFCSVPRLYNRIYDGITSAVKSSGVVKKRLF 381

Query: 346 EFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRV 405
           E AYN K   +  G      +   D LVF+KI+E  GGR++ M SGA+PL   V +FLR+
Sbjct: 382 EIAYNSKKQAIING---RTPSAFWDKLVFNKIKEKLGGRVRFMGSGASPLSPDVMDFLRI 438

Query: 406 TSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSS-VP 464
             G  + +GYG+TE+ S   +++ D  N+ G VG P    E +L  VPEM Y +     P
Sbjct: 439 CFGCSVREGYGMTET-SCVISAMDDGDNLSGHVGSPNPACEVKLVDVPEMNYTSDDQPYP 497

Query: 465 RGEICLRGNTLFSGYYKRPDLTEEVIV-DGWFHTGDIGEWQP 505
           RGEIC+RG  +F GYYK  + T E++  DGW HTGDIG W P
Sbjct: 498 RGEICVRGPIIFKGYYKDEEQTREILDGDGWLHTGDIGLWLP 539

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate, linoleate and eicosenoate. Displays redundant function with LACS7 into the seed development process.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q8LPS1|LACS6_ARATH Long chain acyl-CoA synthetase 6, peroxisomal OS=Arabidopsis thaliana GN=LACS6 PE=1 SV=1

 Score =  327 bits (838), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 189/449 (42%), Positives = 257/449 (57%), Gaps = 13/449 (2%)

Query: 60  QMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM 119
           + LG R   DG VG Y W+TY E   A    GS +   G+  G   GIY  N PEW+I  
Sbjct: 101 KYLGTRVRVDGTVGDYKWMTYGEAGTARTALGSGLVHHGIPMGSSVGIYFINRPEWLIVD 160

Query: 120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVS 179
            AC+S +   VPLYDTLG +AV+FI+NHA V   F     + S+LSCL         +V 
Sbjct: 161 HACSSYSYVSVPLYDTLGPDAVKFIVNHATVQAIFCVAETLNSLLSCLSEMPSVRLVVVV 220

Query: 180 FANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCE-LPPKKKTNISTIMYTSGTTGEPKGV 238
              + S     +   GV   S+   L  G  + +   P K  +++TI YTSGTTG PKGV
Sbjct: 221 GGLIESLPSLPSSS-GVKVVSYSVLLNQGRSNPQRFFPPKPDDVATICYTSGTTGTPKGV 279

Query: 239 VLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWR 298
           VLT+  ++A V                 D Y S+LPLAHIY++  +   ++ G ++GF++
Sbjct: 280 VLTHANLIANVAGSSFS-----VKFFSSDVYISYLPLAHIYERANQILTVYFGVAVGFYQ 334

Query: 299 GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKK 358
           GD   L++D+  L+PT+FS VPR+Y+RIY GI N + + G L ++LF  AYN K   +  
Sbjct: 335 GDNMKLLDDLAALRPTVFSSVPRLYNRIYAGIINAVKTSGGLKERLFNAAYNAKKQALLN 394

Query: 359 GMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLT 418
           G     A+P+ D LVF+KI++  GGR++ M SGA+PL   V EFL+V  G  +T+GYG+T
Sbjct: 395 G---KSASPIWDRLVFNKIKDRLGGRVRFMTSGASPLSPEVMEFLKVCFGGRVTEGYGMT 451

Query: 419 ESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGY-DALSSVPRGEICLRGNTLFS 477
           E+ S   + + +  N+ G VG P    E +L  VPEM Y  A    PRGEIC+RG  +F+
Sbjct: 452 ET-SCVISGMDEGDNLTGHVGSPNPACEVKLVDVPEMNYTSADQPHPRGEICVRGPIIFT 510

Query: 478 GYYKRPDLTEEVI-VDGWFHTGDIGEWQP 505
           GYYK    T+EVI  DGW HTGDIG W P
Sbjct: 511 GYYKDEIQTKEVIDEDGWLHTGDIGLWLP 539

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate, linoleate and eicosenoate. Might play a regulatory role both in fatty acid import into glyoxysomes and in fatty acid beta-oxidation. Displays redundant function with LACS7 into the seed development process.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q1ZXQ4|FCSB_DICDI Fatty acyl-CoA synthetase B OS=Dictyostelium discoideum GN=fcsB PE=2 SV=1

 Score =  303 bits (775), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 173/494 (35%), Positives = 268/494 (54%), Gaps = 16/494 (3%)

Query: 19  KP-SGGPVYRCIYAKDGLLESPAGLE--SPWQFFCDSAKRIPNNQMLGGRKV-SDGKVGP 74
           KP +GG + R     D L+      E  + +     S K+    +  G RK  S+G +G 
Sbjct: 36  KPENGGRIRRNSACADHLISFLEDDEIYTLYDSLVKSCKKYGERKCFGERKKDSNGNLGK 95

Query: 75  YVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYD 134
           + W++Y    +        +   G+ P  + GI+  N  EW+I   A   Q+   V  Y+
Sbjct: 96  FEWISYNTYLERCEYIQQGLCELGLKPKSKVGIFSKNRLEWLIVHSASFIQSYCVVSFYE 155

Query: 135 TLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEEL 194
           TLG  ++ ++  HAE+ +AF     +   L  + +    LKTI+ F ++       A+EL
Sbjct: 156 TLGVESLSYVTEHAEIGLAFCSAETLQKTLD-IAKGVKVLKTIICFDSIDKEHYNIAKEL 214

Query: 195 GVSCFSWEEFLQLGT----LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVL 250
           GV+ ++++E ++ G          PP   T +STIMYTSGTTG PKGV++T++ + + V 
Sbjct: 215 GVTLYTYDEIMKKGKEANGKHKHTPPTPDT-LSTIMYTSGTTGPPKGVMITHKNLTSVVC 273

Query: 251 SVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQE 310
           +V     V      + D ++S+LP AH+ ++++     H G +IG + GD+  ++ +++ 
Sbjct: 274 AVSDFIKVY-----DTDVHYSYLPYAHVLERVVILAAFHFGAAIGIFSGDISNILVEVKL 328

Query: 311 LKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLD 370
           L PT+F GVPRV++RI T +  +IS   AL + LF  AYN K  +++ G        +LD
Sbjct: 329 LSPTLFIGVPRVFERIKTNVFKEISKKPALLRTLFNGAYNLKYLSIQHGFKLPIIEKVLD 388

Query: 371 SLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLAD 430
            + FSKI++A GG+++ +LSG+APL    E FLRV     + QGYG +E C G      D
Sbjct: 389 LVFFSKIKQALGGKVRVILSGSAPLSFDTEVFLRVVMCCCVLQGYGASEGCGGDACKRLD 448

Query: 431 VFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI 490
               +GT+G P  + E +L  VPE+GYD+   V  GE+CLRG ++ SGYYK  + T E  
Sbjct: 449 D-ESVGTIGPPFASNEIKLVDVPELGYDSNGEVQTGEVCLRGPSISSGYYKDEEKTREEF 507

Query: 491 VDGWFHTGDIGEWQ 504
            DGWFHTGDIG W 
Sbjct: 508 KDGWFHTGDIGRWN 521

Long chain fatty acid acyl-CoA synthetases catalyze the formation of a thiester bond between a free fatty acid and coenzyme A during fatty acid metabolic process.

Dictyostelium discoideum (taxid: 44689)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q55DR6|FCSA_DICDI Fatty acyl-CoA synthetase A OS=Dictyostelium discoideum GN=fcsA PE=1 SV=1

 Score =  295 bits (755), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 170/454 (37%), Positives = 267/454 (58%), Gaps = 21/454 (4%)

Query: 58  NNQMLGGRKV-SDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWI 116
           ++  LG R++ +DGK G Y W++Y++    A   GSA+   G+N GDR GI+  N PEW+
Sbjct: 67  DSNFLGIRELLADGKRGDYKWISYKQACIRANNIGSALVQLGLNKGDRIGIFSINRPEWV 126

Query: 117 IAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKT 176
           ++  A  + ++  V LY TLGANA+E+++NH+E+S+   +   +  ILS +P     +KT
Sbjct: 127 LSDMAAMNHSLVPVALYATLGANAIEYVVNHSEISVLLCEGKNVEKILS-MPGTT--IKT 183

Query: 177 IVSFANV-SSSQKKEAEELGVSCFSWEEFLQLGTLD---CELPPKKKTNISTIMYTSGTT 232
           IVS+  +  ++  K  +   V  +   +F +LG  +    E+P  +  ++ T++YTSG+T
Sbjct: 184 IVSYDPLPQATLDKFKDNENVKLYLLSDFEKLGEQNPAQHEVPSPE--DLCTLLYTSGST 241

Query: 233 GEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGC 292
           G PKGV+LT+  +V+EV   +  F   G +   ED + S+LPLAH +++ + +   + G 
Sbjct: 242 GNPKGVMLTHTNMVSEVAGAN--FSPAGVI--PEDVHMSYLPLAHSFERAVVSLMCYVGG 297

Query: 293 SIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYK 352
            IGF+ G +  L  DIQ L+PT   G PRV+ R++  +   +++   L K LF +  N K
Sbjct: 298 QIGFFSGLIPELFNDIQVLRPTFLCGAPRVWQRLHDKLWFTVNNDSWLKKFLFNWGLNSK 357

Query: 353 LGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLT 412
              ++ G       P+ D LVFSK ++  GGR++ +LSG+APL   + EFLR     P+ 
Sbjct: 358 QSALRLG----STTPIWDKLVFSKTKDRLGGRVKFILSGSAPLDPKLAEFLRACFCCPVV 413

Query: 413 QGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSS-VPRGEICLR 471
            GYGL+E+  G   +  +  N +G VG P++  E +L  VPEM Y +     PRGE+C+R
Sbjct: 414 SGYGLSENVGGASVAYPED-NNVGHVGPPLSACEMKLIDVPEMNYFSTDKPCPRGEVCIR 472

Query: 472 GNTLFSGYYKRPDLT-EEVIVDGWFHTGDIGEWQ 504
           G  +F GY+K P+ T E++  DGWFHTGDIG W 
Sbjct: 473 GFNVFKGYFKDPEKTKEDLKEDGWFHTGDIGRWN 506

Long chain fatty acid acyl-CoA synthetases catalyze the formation of a thiester bond between a free fatty acid and coenzyme A during fatty acid metabolic process. May mediate fatty acid retrieval from the lumen of endosomes into the cytoplasm.

Dictyostelium discoideum (taxid: 44689)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|P41216|ACSL1_MOUSE Long-chain-fatty-acid--CoA ligase 1 OS=Mus musculus GN=Acsl1 PE=1 SV=2

 Score =  281 bits (720), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 166/461 (36%), Positives = 260/461 (56%), Gaps = 32/461 (6%)

Query: 58  NNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDR--CGIYGSNCPEW 115
           N   LG RK +     PY W++Y+EV + A   GS +  +G  P      G++  N PEW
Sbjct: 106 NGPCLGSRKPNQ----PYEWISYKEVAELAECIGSGLIQKGFKPCSEQFIGLFSQNRPEW 161

Query: 116 IIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSIL-----SCLPRC 170
           +I  + C S ++  VPLYDTLGA+A+ +I+N AE+S+ F  + +   +L     + L  C
Sbjct: 162 VIVEQGCFSYSMVVVPLYDTLGADAITYIVNKAELSVIFADKPEKAKLLLEGVENKLTPC 221

Query: 171 CLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELP-PKKKTNISTIMYTS 229
              LK IV   +  S   +  ++ GV   S +    LG ++   P P +  +++ I +TS
Sbjct: 222 ---LKIIVIMDSYGSDLVERGKKCGVEIISLKALEDLGRVNRVKPKPPEPEDLAIICFTS 278

Query: 230 GTTGEPKGVVLTNQAIVAE----VLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIET 285
           GTTG PKG ++T+Q I+ +    + + +  F+      S +D   SFLPLAH+++ ++E 
Sbjct: 279 GTTGNPKGAMITHQNIINDCSGFIKATESAFI-----ASTDDVLISFLPLAHMFETVVEC 333

Query: 286 HCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLF 345
             +  G  IGF++GD+R LM+D++ L+PT+F  VPR+ +R++  I  + ++  +L + L 
Sbjct: 334 VMLCHGAKIGFFQGDIRLLMDDLKVLQPTIFPVVPRLLNRMFDRIFGQANT--SLKRWLL 391

Query: 346 EFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRV 405
           +FA   K   ++ G+ +N +  L D L+F KI+ + GG+++ M++GAAP+   V  FLR 
Sbjct: 392 DFASKRKEAELRSGIVRNNS--LWDKLIFHKIQSSLGGKVRLMITGAAPVSATVLTFLRT 449

Query: 406 TSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPR 465
             G    +GYG TE  +GC  SL   +   G VG PM     +L  V EM Y  L+S   
Sbjct: 450 ALGCQFYEGYGQTECTAGCCLSLPGDWTA-GHVGAPMPCNYVKLVDVEEMNY--LASKGE 506

Query: 466 GEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGDIGEWQP 505
           GE+C++G  +F GY K P  T E +  DGW HTGDIG+W P
Sbjct: 507 GEVCVKGANVFKGYLKDPARTAEALDKDGWLHTGDIGKWLP 547

Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses oleate, arachidonate, eicosapentaenoate and docosahexaenoate as substrates.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	508
224103487	658	predicted protein [Populus trichocarpa]	0.986	0.761	0.784	0.0
449455210	661	PREDICTED: long chain acyl-CoA synthetas	0.994	0.763	0.766	0.0
449474962	661	PREDICTED: long chain acyl-CoA synthetas	0.994	0.763	0.762	0.0
356544492	656	PREDICTED: long chain acyl-CoA synthetas	0.992	0.768	0.750	0.0
225428594	659	PREDICTED: long chain acyl-CoA synthetas	0.986	0.760	0.752	0.0
255556171	660	acyl CoA synthetase, putative [Ricinus c	0.990	0.762	0.755	0.0
356541119	656	PREDICTED: long chain acyl-CoA synthetas	0.992	0.768	0.746	0.0
356523415	660	PREDICTED: long chain acyl-CoA synthetas	0.992	0.763	0.744	0.0
356575070	660	PREDICTED: long chain acyl-CoA synthetas	0.992	0.763	0.742	0.0
115485907	661	Os11g0558300 [Oryza sativa Japonica Grou	0.994	0.763	0.689	0.0

>gi|224103487|ref|XP_002313075.1| predicted protein [Populus trichocarpa] gi|222849483|gb|EEE87030.1| predicted protein [Populus trichocarpa]

 Score =  843 bits (2178), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/501 (78%), Positives = 447/501 (89%)

Query: 5   YTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGG 64
           + VKVEE+RPA+DGKPS GPVYR IYAKDGL++ PAGLESPWQFF DSA + P N+MLG 
Sbjct: 3   FIVKVEESRPASDGKPSAGPVYRSIYAKDGLMDLPAGLESPWQFFSDSALKNPENKMLGR 62

Query: 65  RKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNS 124
           R+V D KVGPYVWLTY+EVYD+A+R GSAMR RGVNPGDRCGIYGSNCPEWI AMEAC+S
Sbjct: 63  RQVIDSKVGPYVWLTYKEVYDSAMRMGSAMRRRGVNPGDRCGIYGSNCPEWITAMEACDS 122

Query: 125 QAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVS 184
           QAITYVPLYDTLG NAVEFIINHAEVSIAFVQENK+ SILSCLP+C   LKTIVSF  +S
Sbjct: 123 QAITYVPLYDTLGPNAVEFIINHAEVSIAFVQENKLSSILSCLPKCSSNLKTIVSFGKIS 182

Query: 185 SSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQA 244
             QKKEA+ELGVSCFSWEEF QLG+LDCELPPK KT++ TIMYTSGTTGEPKGV+LTN A
Sbjct: 183 DMQKKEADELGVSCFSWEEFPQLGSLDCELPPKHKTDVCTIMYTSGTTGEPKGVILTNGA 242

Query: 245 IVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYL 304
           +VAEVLSVDQ+  +T +V +EED+YFSFLPLAH+YDQ+IET+CI+KG SIGFW+GDVRYL
Sbjct: 243 LVAEVLSVDQLLFLTDRVAAEEDSYFSFLPLAHVYDQVIETYCIYKGASIGFWQGDVRYL 302

Query: 305 MEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNK 364
           MEDIQELKP++F GVPRVYDRIYTG   K+S+GG L KKLF+FAYNYKLG ++KG PQ K
Sbjct: 303 MEDIQELKPSIFCGVPRVYDRIYTGTLAKVSAGGGLKKKLFDFAYNYKLGYLEKGFPQEK 362

Query: 365 AAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGC 424
           AAPLLD LVF K ++A GGR++ +LSGAAPLP HVEEFLRVTS + L+QGYGLTESC GC
Sbjct: 363 AAPLLDRLVFDKTKQALGGRVRILLSGAAPLPKHVEEFLRVTSCSTLSQGYGLTESCGGC 422

Query: 425 FTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPD 484
           FTS+ +V+ M+GTVGVPMTT+E+RLESVPEMGYDALSSVPRGEICLRG+TLFSGY+KR D
Sbjct: 423 FTSIGNVYPMVGTVGVPMTTIESRLESVPEMGYDALSSVPRGEICLRGSTLFSGYHKRED 482

Query: 485 LTEEVIVDGWFHTGDIGEWQP 505
           LT EV+VDGWFHTGDIGEWQP
Sbjct: 483 LTNEVLVDGWFHTGDIGEWQP 503

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455210|ref|XP_004145346.1| PREDICTED: long chain acyl-CoA synthetase 2-like [Cucumis sativus]

 Score =  823 bits (2126), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/506 (76%), Positives = 442/506 (87%), Gaps = 1/506 (0%)

Query: 1   MSETYTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQ 60
           MS +YTV VE   P + G+PS GPVYR IYAKDGLL+ P  L+SPWQFF DS KR P N 
Sbjct: 1   MSTSYTVVVEADTPQSGGRPSAGPVYRSIYAKDGLLQLPDELQSPWQFFSDSVKRNPGNP 60

Query: 61  MLGGRKVS-DGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM 119
           MLG R+ + D K G YVWLTYQE YDAAIR GSA+R RGVN GDRCGIYGSNCPEWII+M
Sbjct: 61  MLGRRQTNGDSKAGSYVWLTYQEAYDAAIRMGSAIRKRGVNSGDRCGIYGSNCPEWIISM 120

Query: 120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVS 179
           EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENK+ SI SCLPRC   LKTIVS
Sbjct: 121 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKLASIFSCLPRCSNQLKTIVS 180

Query: 180 FANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVV 239
           F NVSS  KKEAEELGVSCFSWEEF QLG+LDCELP K+KT+I TIMYTSGTTGEPKGV+
Sbjct: 181 FTNVSSVLKKEAEELGVSCFSWEEFCQLGSLDCELPSKQKTDICTIMYTSGTTGEPKGVI 240

Query: 240 LTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG 299
           L N A++AEVLSV+ + ++T KV +EED+YFSFLPLAH+YDQI+ET+CI+KG SIGFWRG
Sbjct: 241 LNNTAVMAEVLSVEHLLLLTDKVATEEDSYFSFLPLAHVYDQIMETYCIYKGSSIGFWRG 300

Query: 300 DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKG 359
           D+R+L++DIQELKPT+FSGVPRVYDRIY+GI NK+SSGG+L K LF++AY YKLG +KKG
Sbjct: 301 DIRFLLDDIQELKPTIFSGVPRVYDRIYSGILNKVSSGGSLRKMLFDYAYIYKLGYLKKG 360

Query: 360 MPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTE 419
           + Q KAAPLLD LVF KI+EAFGGR++  LSGAAPLP HVEEFLRVTS A L+QGYGLTE
Sbjct: 361 LLQEKAAPLLDKLVFDKIKEAFGGRVRLFLSGAAPLPRHVEEFLRVTSCATLSQGYGLTE 420

Query: 420 SCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGY 479
           SC GCFTS+A+VF M+GTVGVP+TT+EARLESVP+MGYDAL++ PRGEICLRG+TLFSGY
Sbjct: 421 SCGGCFTSIANVFTMMGTVGVPVTTIEARLESVPDMGYDALATTPRGEICLRGSTLFSGY 480

Query: 480 YKRPDLTEEVIVDGWFHTGDIGEWQP 505
           +KR DLT EV++DGWFHTGDIGEWQP
Sbjct: 481 HKRQDLTGEVLIDGWFHTGDIGEWQP 506

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449474962|ref|XP_004154333.1| PREDICTED: long chain acyl-CoA synthetase 2-like [Cucumis sativus]

 Score =  818 bits (2112), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/506 (76%), Positives = 440/506 (86%), Gaps = 1/506 (0%)

Query: 1   MSETYTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQ 60
           MS +YTV VE   P + G+PS GPVYR IYAKDGLL+ P  L+SPWQFF DS KR P N 
Sbjct: 1   MSTSYTVVVEADTPQSGGRPSAGPVYRSIYAKDGLLQLPDELQSPWQFFSDSVKRNPGNP 60

Query: 61  MLGGRKVS-DGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM 119
           MLG R+ + D KV    WLTYQE YDAAIR GSA+R RGVN GDRCGIYGSNCPEWII+M
Sbjct: 61  MLGRRQTNGDSKVAAIRWLTYQEAYDAAIRMGSAIRKRGVNSGDRCGIYGSNCPEWIISM 120

Query: 120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVS 179
           EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENK+ SI SCLPRC   LKTIVS
Sbjct: 121 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKLASIFSCLPRCSNQLKTIVS 180

Query: 180 FANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVV 239
           F NVSS  KKEAEELGVSCFSWEEF QLG+LDCELP K+KT+I TIMYTSGTTGEPKGV+
Sbjct: 181 FTNVSSVLKKEAEELGVSCFSWEEFCQLGSLDCELPSKQKTDICTIMYTSGTTGEPKGVI 240

Query: 240 LTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG 299
           L N A++AEVLSV+ + ++T KV +EED+YFSFLPLAH+YDQI+ET+CI+KG SIGFWRG
Sbjct: 241 LNNTAVMAEVLSVEHLLLLTDKVATEEDSYFSFLPLAHVYDQIMETYCIYKGSSIGFWRG 300

Query: 300 DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKG 359
           D+R+L++DIQELKPT+FSGVPRVYDRIY+GI NK+SSGG+L K LF++AY YKLG +KKG
Sbjct: 301 DIRFLLDDIQELKPTIFSGVPRVYDRIYSGILNKVSSGGSLRKMLFDYAYIYKLGYLKKG 360

Query: 360 MPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTE 419
           + Q KAAPLLD LVF KI+EAFGGR++  LSGAAPLP HVEEFLRVTS A L+QGYGLTE
Sbjct: 361 LLQEKAAPLLDKLVFDKIKEAFGGRVRLFLSGAAPLPRHVEEFLRVTSCATLSQGYGLTE 420

Query: 420 SCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGY 479
           SC GCFTS+A+VF M+GTVGVP+TT+EARLESVP+MGYDAL++ PRGEICLRG+TLFSGY
Sbjct: 421 SCGGCFTSIANVFTMMGTVGVPVTTIEARLESVPDMGYDALATTPRGEICLRGSTLFSGY 480

Query: 480 YKRPDLTEEVIVDGWFHTGDIGEWQP 505
           +KR DLT EV++DGWFHTGDIGEWQP
Sbjct: 481 HKRQDLTGEVLIDGWFHTGDIGEWQP 506

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544492|ref|XP_003540684.1| PREDICTED: long chain acyl-CoA synthetase 2-like [Glycine max]

 Score =  816 bits (2107), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/505 (75%), Positives = 437/505 (86%), Gaps = 1/505 (0%)

Query: 1   MSETYTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQ 60
           M E YTVKVEEARPA   KPS GPVYRCIYAKD L   P+  ESPW+FF D+  R P+N 
Sbjct: 1   MPEVYTVKVEEARPATHEKPSAGPVYRCIYAKDALTVLPSHFESPWEFFRDTTTRCPSNP 60

Query: 61  MLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120
           MLG R+ SD KVGPY W+TYQE YDAAIR GSAMRSR VNPGDRCGIYGSNCPEWIIAME
Sbjct: 61  MLGRRQKSDSKVGPYEWITYQEAYDAAIRMGSAMRSRDVNPGDRCGIYGSNCPEWIIAME 120

Query: 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSF 180
           ACNS A+TYVPLYDTLG NAVEFIINHAEVSIAFVQ+NK PS+LSCL RC   LKT+VSF
Sbjct: 121 ACNSYAVTYVPLYDTLGPNAVEFIINHAEVSIAFVQDNKFPSVLSCLDRCS-SLKTVVSF 179

Query: 181 ANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVL 240
            NVS++QKKEAEELG SCFSWEEFLQLG +D +LP K KTNI TIMYTSGTTGEPKGV++
Sbjct: 180 GNVSTTQKKEAEELGASCFSWEEFLQLGNMDLDLPLKNKTNICTIMYTSGTTGEPKGVII 239

Query: 241 TNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGD 300
            N+A + +VLS+DQ+  +T +V +E+D YFSFLPLAH+YDQI+ET+CI+KG SIGFW+GD
Sbjct: 240 KNEAFMTQVLSIDQILNLTDRVGTEDDVYFSFLPLAHVYDQIMETYCIYKGSSIGFWQGD 299

Query: 301 VRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGM 360
           VR+LMEDIQ LKPT+F  VPRVYDR+Y GIS+KISSGGAL   LF++AYNYKLG ++KG+
Sbjct: 300 VRFLMEDIQALKPTLFCAVPRVYDRVYAGISSKISSGGALQSTLFQYAYNYKLGYLEKGL 359

Query: 361 PQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTES 420
           PQ+KAAPL D LVF KI++A GGR++ +LSGAAPLP HVEEFLRVT GA ++QGYGLTES
Sbjct: 360 PQDKAAPLFDKLVFDKIKQALGGRVRLLLSGAAPLPRHVEEFLRVTFGATMSQGYGLTES 419

Query: 421 CSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYY 480
           C GCFT++++VF+M+GT+GVPMTT+E+RLESVPEMGYDALSS  RGEICLRGNTLFSGY+
Sbjct: 420 CGGCFTAISNVFSMMGTIGVPMTTIESRLESVPEMGYDALSSEARGEICLRGNTLFSGYH 479

Query: 481 KRPDLTEEVIVDGWFHTGDIGEWQP 505
           K  DLTEEV+VDGWFHTGDIGEWQP
Sbjct: 480 KHQDLTEEVMVDGWFHTGDIGEWQP 504

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428594|ref|XP_002281151.1| PREDICTED: long chain acyl-CoA synthetase 2 [Vitis vinifera] gi|297741400|emb|CBI32531.3| unnamed protein product [Vitis vinifera]

 Score =  813 bits (2099), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/501 (75%), Positives = 439/501 (87%)

Query: 5   YTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGG 64
           YTVKV ++ PA + +PS GPVYRCIYA++GLLE P G+ESPW+FF DS +R P NQMLG 
Sbjct: 4   YTVKVADSIPATEERPSAGPVYRCIYAENGLLEVPKGMESPWEFFSDSVERNPKNQMLGR 63

Query: 65  RKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNS 124
           R++ + K GPYVWLTY+E YDAA+R GSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNS
Sbjct: 64  RQIINSKAGPYVWLTYREAYDAALRMGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNS 123

Query: 125 QAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVS 184
           QAI YVPLYD+LGANAVEFIINHAEVSIAFVQE+KIP++L+CLP+C  YLKTI+SF  +S
Sbjct: 124 QAIPYVPLYDSLGANAVEFIINHAEVSIAFVQESKIPAMLTCLPKCTSYLKTIISFGKIS 183

Query: 185 SSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQA 244
           SSQK+EAEELGVSCFSWEEF  LG+LDCELPPK+KT+I TIMYTSGTTGEPKGVVL+N+A
Sbjct: 184 SSQKEEAEELGVSCFSWEEFALLGSLDCELPPKQKTDICTIMYTSGTTGEPKGVVLSNEA 243

Query: 245 IVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYL 304
           I+AEVLS DQ+ + T KV +EEDTYFSFLPLAH++DQI+ET+CI+KG SIGFW  DVRYL
Sbjct: 244 IMAEVLSTDQLLLETDKVATEEDTYFSFLPLAHVFDQIMETYCIYKGSSIGFWGADVRYL 303

Query: 305 MEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNK 364
           MEDIQELKPT+F GVPRVY+RIY G   KISSGGAL K LF++AYNYKL N++KG+ Q++
Sbjct: 304 MEDIQELKPTIFCGVPRVYERIYGGAIAKISSGGALRKALFQYAYNYKLRNLEKGLRQDE 363

Query: 365 AAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGC 424
           AAP LD L+F KI++ FGGR++ + SGAAPL  HVEEFLRVTS + L+QGYGLTESC GC
Sbjct: 364 AAPRLDRLIFDKIKQGFGGRVRLLFSGAAPLSRHVEEFLRVTSCSVLSQGYGLTESCGGC 423

Query: 425 FTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPD 484
            TS+ + F+M+GTVGVP  T+EARLESVPEMGYDALS+VPRGEICLRG TLFSGY+KR D
Sbjct: 424 LTSIVNEFSMMGTVGVPYPTIEARLESVPEMGYDALSNVPRGEICLRGKTLFSGYFKRQD 483

Query: 485 LTEEVIVDGWFHTGDIGEWQP 505
           LTE  +VDGWFHTGDIGEWQP
Sbjct: 484 LTESALVDGWFHTGDIGEWQP 504

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556171|ref|XP_002519120.1| acyl CoA synthetase, putative [Ricinus communis] gi|223541783|gb|EEF43331.1| acyl CoA synthetase, putative [Ricinus communis]

 Score =  808 bits (2088), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/507 (75%), Positives = 438/507 (86%), Gaps = 4/507 (0%)

Query: 1   MSETYTVKVEEARPAA-DGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNN 59
           MS  Y VKVEE+RPAA DGKPS GPV+R IYAKDGLLE  A L+SPWQF  DSA + PNN
Sbjct: 1   MSMEYLVKVEESRPAASDGKPSAGPVFRSIYAKDGLLEVSAELDSPWQFLSDSALKNPNN 60

Query: 60  QMLGGRKVSDGKV-GPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIA 118
           +MLG R V+D KV GPYVWLTY+EVY+ AIR GSAMRSRG+NPGDRCGIYGSNCPEWI A
Sbjct: 61  RMLGRRLVTDSKVAGPYVWLTYKEVYETAIRIGSAMRSRGLNPGDRCGIYGSNCPEWITA 120

Query: 119 MEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIV 178
           MEAC S AIT+VPLYDTLG NAVEFI+NHAEVS+AFVQE+K+ SIL+CLP+C  YLK+  
Sbjct: 121 MEACKSHAITFVPLYDTLGPNAVEFIVNHAEVSLAFVQESKLSSILACLPKCSSYLKS-- 178

Query: 179 SFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGV 238
           +F +VS+ QKKEAEELG SCFSWEEF QLG+LDCELP K K +I TIMYTSGTTGEPKGV
Sbjct: 179 NFGSVSAMQKKEAEELGASCFSWEEFCQLGSLDCELPAKHKGDICTIMYTSGTTGEPKGV 238

Query: 239 VLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWR 298
           +LTN AI+AEVLSVD +  +T +  +EED+YFSFLPLAH+YDQ+IET+CI KG SIGFWR
Sbjct: 239 LLTNGAIMAEVLSVDHLLFLTDRAATEEDSYFSFLPLAHVYDQVIETYCIQKGASIGFWR 298

Query: 299 GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKK 358
           GDVR+L+ED Q LKP++F GVPRVYDRIYTG   KISSGGAL KKLF+FAY+YKLGN++K
Sbjct: 299 GDVRFLLEDAQALKPSIFCGVPRVYDRIYTGTMQKISSGGALRKKLFDFAYSYKLGNLQK 358

Query: 359 GMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLT 418
           G+PQ +AAPLLD LVF K ++  GGR++ MLSGAAPLP HVEEFLRVTS + L+QGYGLT
Sbjct: 359 GLPQAQAAPLLDRLVFEKTKQTLGGRVRIMLSGAAPLPKHVEEFLRVTSCSTLSQGYGLT 418

Query: 419 ESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSG 478
           ESC GC TS+ DVF M+GTVGVPMTT+E RLESVPEMGYDALSSVPRGEICLRGNTLFSG
Sbjct: 419 ESCGGCLTSIGDVFPMVGTVGVPMTTIEVRLESVPEMGYDALSSVPRGEICLRGNTLFSG 478

Query: 479 YYKRPDLTEEVIVDGWFHTGDIGEWQP 505
           Y+KR DLT+EV++DGWFHTGDIGE QP
Sbjct: 479 YHKREDLTKEVLIDGWFHTGDIGELQP 505

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356541119|ref|XP_003539030.1| PREDICTED: long chain acyl-CoA synthetase 2-like [Glycine max]

 Score =  806 bits (2083), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/505 (74%), Positives = 437/505 (86%), Gaps = 1/505 (0%)

Query: 1   MSETYTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQ 60
           M E Y+VKVEEARPA   KPS GPVYRCIYAKD L + P+  +SPWQFF D+  R P+N 
Sbjct: 1   MPELYSVKVEEARPATHEKPSAGPVYRCIYAKDALTQLPSHFQSPWQFFRDTTTRCPSNP 60

Query: 61  MLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120
           MLG R+ SD KVGPY W+TYQE YDAAIR GSAMRSRGVNPG RCGIYGSNCPEWIIAM+
Sbjct: 61  MLGRRQKSDSKVGPYQWITYQEAYDAAIRMGSAMRSRGVNPGYRCGIYGSNCPEWIIAMQ 120

Query: 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSF 180
           ACNS A+TYVPLYDTLG NAVEFIINHAEVSIAFVQ++KIPS+LSCL R    LKTIVSF
Sbjct: 121 ACNSYAVTYVPLYDTLGPNAVEFIINHAEVSIAFVQDSKIPSVLSCLDRWS-SLKTIVSF 179

Query: 181 ANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVL 240
            NVS++QKKEAEELG SCFSWEEFLQ+G +D +LPPKKKTNI TIMYTSGTTGEPKGV++
Sbjct: 180 GNVSTTQKKEAEELGASCFSWEEFLQMGNIDLDLPPKKKTNICTIMYTSGTTGEPKGVII 239

Query: 241 TNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGD 300
            N+A + +VLS+DQ+  +T +V +E+D YFSFLPLAH+YDQI+ET+CI+KG SIGFW+GD
Sbjct: 240 KNEAFMTQVLSIDQILNLTDRVGTEDDVYFSFLPLAHVYDQIMETYCIYKGSSIGFWQGD 299

Query: 301 VRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGM 360
           V +LMEDI  LKPT+F GVPRVYDR+Y  IS+KISSGGAL   LF++AYNYKLG ++KG+
Sbjct: 300 VGFLMEDILALKPTLFCGVPRVYDRVYACISSKISSGGALQSTLFQYAYNYKLGYLEKGL 359

Query: 361 PQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTES 420
           PQ+KAAPL D LVF KI++A GGR++ +LSGAAPLP HVEEFLRVT GA ++QGYGLTES
Sbjct: 360 PQDKAAPLFDKLVFDKIKQALGGRVRLLLSGAAPLPRHVEEFLRVTFGATMSQGYGLTES 419

Query: 421 CSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYY 480
           C GCFT +++VF+M+GT+GVPMTT+EARLESVPEMGYDALSS  RGEICLRGNTLFSGY+
Sbjct: 420 CGGCFTGISNVFSMMGTIGVPMTTIEARLESVPEMGYDALSSEARGEICLRGNTLFSGYH 479

Query: 481 KRPDLTEEVIVDGWFHTGDIGEWQP 505
           K  DLTEEV+VDGWFHTGDIGEWQP
Sbjct: 480 KHQDLTEEVMVDGWFHTGDIGEWQP 504

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356523415|ref|XP_003530335.1| PREDICTED: long chain acyl-CoA synthetase 2-like [Glycine max]

 Score =  805 bits (2078), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/504 (74%), Positives = 434/504 (86%)

Query: 1   MSETYTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQ 60
           M E YTVKVEE RPA D KPS GPVYR IYAKDGLLE P+  ESPW FF DS KR PNN+
Sbjct: 1   MPEVYTVKVEEGRPATDAKPSAGPVYRSIYAKDGLLEVPSDFESPWDFFRDSVKRNPNNK 60

Query: 61  MLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120
           MLG R+ ++ KVG Y WLTYQ+VYDAA++ GSAMRSRGVNPGDRCGIYGSNCPEWII ME
Sbjct: 61  MLGRRQKTESKVGSYTWLTYQDVYDAALKMGSAMRSRGVNPGDRCGIYGSNCPEWIIVME 120

Query: 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSF 180
           ACNS A +YVPLYDTLG NAVEFIINHAEVSIAFVQE KIPSILSCL +C   LKTIVSF
Sbjct: 121 ACNSCAASYVPLYDTLGPNAVEFIINHAEVSIAFVQEKKIPSILSCLAQCSSNLKTIVSF 180

Query: 181 ANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVL 240
            +VS++QKKEAEE G SCFSW EFLQLG LD +LP KKK +I TIMYTSGTTG+PKGVV+
Sbjct: 181 GSVSTTQKKEAEEHGASCFSWGEFLQLGCLDWDLPSKKKNDICTIMYTSGTTGDPKGVVI 240

Query: 241 TNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGD 300
            N+A +AEVLSVD + ++T +V  E+D YFSFLPLAH+YDQI+ET+CI+KG SIGFW+GD
Sbjct: 241 KNEAFMAEVLSVDHIIMLTDRVVGEDDVYFSFLPLAHVYDQIMETYCIYKGSSIGFWQGD 300

Query: 301 VRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGM 360
           VR+L+ED+Q LKPT+F GVPRV+DRIY GI +K+SS G L   LF+ AYNYKL +++KG+
Sbjct: 301 VRFLLEDVQALKPTIFCGVPRVFDRIYAGIKSKVSSAGGLQSTLFQCAYNYKLKSLEKGL 360

Query: 361 PQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTES 420
           PQ+KAAPL D LVF K + A GGR++ +LSGAAPLP HVEEF+RVTSG+ L+QGYGLTES
Sbjct: 361 PQHKAAPLFDRLVFDKTKLALGGRVRILLSGAAPLPRHVEEFMRVTSGSTLSQGYGLTES 420

Query: 421 CSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYY 480
           C+GCFT++ DV++M GTVGVPMTT+EARLESVPEMGYDALS+VPRGEICLRGNTLFSGY+
Sbjct: 421 CAGCFTAIGDVYSMTGTVGVPMTTIEARLESVPEMGYDALSNVPRGEICLRGNTLFSGYH 480

Query: 481 KRPDLTEEVIVDGWFHTGDIGEWQ 504
           KR DLT+EV+VDGWFHTGDIGEWQ
Sbjct: 481 KREDLTKEVMVDGWFHTGDIGEWQ 504

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575070|ref|XP_003555665.1| PREDICTED: long chain acyl-CoA synthetase 2-like [Glycine max]

 Score =  798 bits (2062), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/504 (74%), Positives = 434/504 (86%)

Query: 1   MSETYTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQ 60
           M E YTVKVEE R A DGKPS GPVYR IYAKDGLLE P+  +SPW FF DS KR PNN 
Sbjct: 1   MPEVYTVKVEEGRLATDGKPSVGPVYRSIYAKDGLLEVPSDFKSPWDFFRDSVKRNPNNN 60

Query: 61  MLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120
           MLG R+ ++ K+G Y WLTYQ+VYDAA++ GSA+RSRGVNPGDRCGIYGSNCPEWIIAME
Sbjct: 61  MLGRRQKTESKLGSYTWLTYQDVYDAAMKMGSAIRSRGVNPGDRCGIYGSNCPEWIIAME 120

Query: 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSF 180
           ACNS A++YVPLYDTLG NAVEFIINHAEVSIAFVQE KIPS+LSCL +C   LKTIVSF
Sbjct: 121 ACNSCAVSYVPLYDTLGPNAVEFIINHAEVSIAFVQEKKIPSVLSCLAQCSSNLKTIVSF 180

Query: 181 ANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVL 240
            +VS++QKKEAE  G SCFSW EFLQLG LD +LP KKKT+I TIMYTSGTTG+PKGVV+
Sbjct: 181 GSVSTTQKKEAEGHGASCFSWGEFLQLGCLDWDLPSKKKTDICTIMYTSGTTGDPKGVVI 240

Query: 241 TNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGD 300
            N+A +AEVLSVD + ++T +V  E+D YFSFLPLAH+YDQI+ET+CI KG SIGFW+GD
Sbjct: 241 KNEAFMAEVLSVDHIIMLTDRVAGEDDVYFSFLPLAHVYDQIMETYCISKGSSIGFWQGD 300

Query: 301 VRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGM 360
           VR+L+EDIQELKPT+F GVPRV+DRIY GI +K+SS G L   LF+ AYNYKL  ++KG+
Sbjct: 301 VRFLLEDIQELKPTIFCGVPRVFDRIYAGIKSKVSSAGPLQSTLFQCAYNYKLKYLEKGL 360

Query: 361 PQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTES 420
           PQ+KAAPL D LVF K + A GGR++ +LSGAAPLP HVEEF+RVTSG+ L+QGYGLTES
Sbjct: 361 PQHKAAPLFDRLVFDKTKLALGGRVRILLSGAAPLPRHVEEFMRVTSGSTLSQGYGLTES 420

Query: 421 CSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYY 480
           C+GCFT++ DV++M GTVGVPMTT+EARLESVPEMGYDALS+VPRGEICLRGNTLFSGY+
Sbjct: 421 CAGCFTAIGDVYSMTGTVGVPMTTIEARLESVPEMGYDALSNVPRGEICLRGNTLFSGYH 480

Query: 481 KRPDLTEEVIVDGWFHTGDIGEWQ 504
           KR DLT+EV+VDGWFHTGDIGEWQ
Sbjct: 481 KREDLTKEVMVDGWFHTGDIGEWQ 504

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115485907|ref|NP_001068097.1| Os11g0558300 [Oryza sativa Japonica Group] gi|77551497|gb|ABA94294.1| AMP-binding enzyme family protein, expressed [Oryza sativa Japonica Group] gi|113645319|dbj|BAF28460.1| Os11g0558300 [Oryza sativa Japonica Group] gi|215766667|dbj|BAG98895.1| unnamed protein product [Oryza sativa Japonica Group] gi|222616147|gb|EEE52279.1| hypothetical protein OsJ_34263 [Oryza sativa Japonica Group]

 Score =  763 bits (1970), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/505 (68%), Positives = 426/505 (84%)

Query: 1   MSETYTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQ 60
           M ETYTVKV EA PAA GKPS GPVYR IY+KDGL++ P  + SPW FF  + K+ P N+
Sbjct: 1   MEETYTVKVGEATPAAGGKPSAGPVYRSIYSKDGLMKLPEDILSPWDFFSGAVKQYPKNK 60

Query: 61  MLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120
           MLG RKVSDGK G YVWLTY+EVY   I+ GSA+RS  V PG  CGIYGSNCPEW++AM+
Sbjct: 61  MLGQRKVSDGKAGDYVWLTYEEVYQKVIKIGSAIRSLRVKPGGHCGIYGSNCPEWVMAMQ 120

Query: 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSF 180
           ACNSQ I YVPLYDTLGANAVEFI++HAE+SIAFVQE+KI S+LS + RC  ++K IVSF
Sbjct: 121 ACNSQGICYVPLYDTLGANAVEFIMDHAEISIAFVQESKIQSVLSVVKRCRAHIKAIVSF 180

Query: 181 ANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVL 240
            +V+S  K+EAE+LGVSCFSWEEF  +G  + ELP K+K +I TIMYTSGTTG+PKGV++
Sbjct: 181 GDVTSELKREAEQLGVSCFSWEEFSSMGKQNYELPKKQKDDICTIMYTSGTTGDPKGVII 240

Query: 241 TNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGD 300
           TN+A++A V++ + +  VT KV +E+D+YFS+LPLAHI+DQ+I  +CI KG SIGFW+ D
Sbjct: 241 TNRALIAGVMTTEHLLKVTDKVVAEDDSYFSYLPLAHIFDQVIGNYCISKGASIGFWQAD 300

Query: 301 VRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGM 360
           +RYLMED+Q +KPT+F GVPRVYDRIYTGI+ KI SGG ++K LF++AYNYKLGN++KG+
Sbjct: 301 IRYLMEDVQMMKPTVFCGVPRVYDRIYTGINQKIQSGGMIAKSLFQYAYNYKLGNLRKGL 360

Query: 361 PQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTES 420
            Q++A+P  D +VFSKI+E  GGR++ +LSGAAPLP HVEEF+RVTS + L QGYGLTES
Sbjct: 361 KQDEASPFFDKIVFSKIKEGLGGRIRLLLSGAAPLPRHVEEFMRVTSCSVLVQGYGLTES 420

Query: 421 CSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYY 480
           CSGCFTS+A+VF+MIG+VG P+TT+EARLES+PEMGYDALS+VPRGEICLRG+TLFSGYY
Sbjct: 421 CSGCFTSIANVFSMIGSVGPPVTTIEARLESIPEMGYDALSNVPRGEICLRGHTLFSGYY 480

Query: 481 KRPDLTEEVIVDGWFHTGDIGEWQP 505
           KRPDLTEEV  DGWFHTGDIGEWQP
Sbjct: 481 KRPDLTEEVFSDGWFHTGDIGEWQP 505

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	508
TAIR|locus:2010177	665	LACS2 "long-chain acyl-CoA syn	0.976	0.745	0.670	2.7e-187
TAIR|locus:2014265	665	LACS3 "long-chain acyl-CoA syn	0.986	0.753	0.562	2.9e-158
TAIR|locus:2138141	666	LACS4 "long-chain acyl-CoA syn	0.986	0.752	0.559	2.4e-156
TAIR|locus:2136148	666	AT4G11030 [Arabidopsis thalian	0.986	0.752	0.557	4.9e-156
TAIR|locus:2065195	660	LACS1 "AT2G47240" [Arabidopsis	0.990	0.762	0.482	7.3e-130
TAIR|locus:2083013	701	LACS6 "AT3G05970" [Arabidopsis	0.852	0.617	0.430	9.9e-87
TAIR|locus:2143661	700	LACS7 "AT5G27600" [Arabidopsis	0.875	0.635	0.406	1e-84
WB|WBGene00022037	719	acs-13 [Caenorhabditis elegans	0.864	0.610	0.396	3.2e-81
DICTYBASE|DDB_G0269474	673	fcsB "fatty acyl-CoA synthetas	0.938	0.708	0.352	4.2e-79
DICTYBASE|DDB_G0269242	667	fcsA "long-chain-fatty-acid-Co	0.850	0.647	0.375	7.1e-77

TAIR|locus:2010177 LACS2 "long-chain acyl-CoA synthetase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1816 (644.3 bits), Expect = 2.7e-187, P = 2.7e-187
 Identities = 334/498 (67%), Positives = 399/498 (80%)

Query:     9 VEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVS 68
             VEE RPA    PS GPVYRC YAKDGLL+ P  ++SPWQFF ++ K+ PN QMLG R  +
Sbjct:    11 VEEGRPATAEHPSAGPVYRCKYAKDGLLDLPTDIDSPWQFFSEAVKKYPNEQMLGQRVTT 70

Query:    69 DGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAIT 128
             D KVGPY W+TY+E +DAAIR GSA+RSRGV+PG  CGIYG+NCPEWIIAMEAC SQ IT
Sbjct:    71 DSKVGPYTWITYKEAHDAAIRIGSAIRSRGVDPGHCCGIYGANCPEWIIAMEACMSQGIT 130

Query:   129 YVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQK 188
             YVPLYD+LG NAVEFIINHAEVS+ FVQE  + SILSC   C   LKTIVSF  VSS+QK
Sbjct:   131 YVPLYDSLGVNAVEFIINHAEVSLVFVQEKTVSSILSCQKGCSSNLKTIVSFGEVSSTQK 190

Query:   189 KEAEELGVSCFSWEEFLQLGTLD-CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVA 247
             +EA+   VS FSW EF  +G LD   LP K+KT+I TIMYTSGTTGEPKGV+L N AI  
Sbjct:   191 EEAKNQCVSLFSWNEFSLMGNLDEANLPRKRKTDICTIMYTSGTTGEPKGVILNNAAISV 250

Query:   248 EVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMED 307
             +VLS+D+M  VT + C   D +FS+LPLAH YDQ++E + + +G S+G+WRGD+RYLM+D
Sbjct:   251 QVLSIDKMLEVTDRSCDTSDVFFSYLPLAHCYDQVMEIYFLSRGSSVGYWRGDIRYLMDD 310

Query:   308 IQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAP 367
             +Q LKPT+F GVPRVYD++Y GI  KIS+ G + KKLF+FAYNYKLGNM+KG  Q +A+P
Sbjct:   311 VQALKPTVFCGVPRVYDKLYAGIMQKISASGLIRKKLFDFAYNYKLGNMRKGFSQEEASP 370

Query:   368 LLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTS 427
              LD L+F KI+EA GGR   +LSGAAPLP HVEEFLR+   + L+QGYGLTESC G FT+
Sbjct:   371 RLDRLMFDKIKEALGGRAHMLLSGAAPLPRHVEEFLRIIPASNLSQGYGLTESCGGSFTT 430

Query:   428 LADVFNMIGTVGVPMTTVEARLESVPEMGYDALSS-VPRGEICLRGNTLFSGYYKRPDLT 486
             LA VF+M+GTVGVPM TVEARL SVPEMGYDA S+ VPRGEICLRGN++FSGY+KR DLT
Sbjct:   431 LAGVFSMVGTVGVPMPTVEARLVSVPEMGYDAFSADVPRGEICLRGNSMFSGYHKRQDLT 490

Query:   487 EEVIVDGWFHTGDIGEWQ 504
             ++V++DGWFHTGDIGEWQ
Sbjct:   491 DQVLIDGWFHTGDIGEWQ 508

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0001676 "long-chain fatty acid metabolic process" evidence=RCA;IDA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0010143 "cutin biosynthetic process" evidence=IMP

GO:0050832 "defense response to fungus" evidence=IMP

GO:0010311 "lateral root formation" evidence=IMP

GO:0010025 "wax biosynthetic process" evidence=IGI

GO:0031957 "very long-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0002213 "defense response to insect" evidence=RCA

GO:0006633 "fatty acid biosynthetic process" evidence=RCA;TAS

TAIR|locus:2014265 LACS3 "long-chain acyl-CoA synthetase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1542 (547.9 bits), Expect = 2.9e-158, P = 2.9e-158
 Identities = 283/503 (56%), Positives = 372/503 (73%)

Query:     5 YTVKVEEARPAADG-KPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLG 63
             Y V+VE+ +   DG  PS GPVYR IYAKDG  E P  L S W  F  S ++ PNN MLG
Sbjct:     6 YIVEVEKGKQGVDGGSPSVGPVYRSIYAKDGFPEPPDDLVSAWDIFRLSVEKSPNNPMLG 65

Query:    64 GRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACN 123
              R++ DGK G YVW TY+EV++  I+ G+++R+ GV  GD+CGIYG+N PEWII+MEACN
Sbjct:    66 RREIVDGKAGKYVWQTYKEVHNVVIKLGNSIRTIGVGKGDKCGIYGANSPEWIISMEACN 125

Query:   124 SQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANV 183
             +  +  VPLYDTLGA A+EFII HAEVS+AF +ENKI  +L   P+   YLK IVSF  V
Sbjct:   126 AHGLYCVPLYDTLGAGAIEFIICHAEVSLAFAEENKISELLKTAPKSTKYLKYIVSFGEV 185

Query:   184 SSSQKKEAEELGVSCFSWEEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTN 242
             +++Q+ EAE   ++ +SW++FL+LG     ELP K+++++ TIMYTSGTTG+PKGV+LTN
Sbjct:   186 TNNQRVEAERHRLTIYSWDQFLKLGEGKHYELPEKRRSDVCTIMYTSGTTGDPKGVLLTN 245

Query:   243 QAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVR 302
             ++I+  +  V ++     +  + +D Y S+LPLAHI+D++IE  CI++  SIGFWRGDV+
Sbjct:   246 ESIIHLLEGVKKLLKTIDEELTSKDVYLSYLPLAHIFDRVIEELCIYEAASIGFWRGDVK 305

Query:   303 YLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQ 362
              L+EDI  LKPT+F  VPRV +RIYTG+  K+S GG + KKLF FA+ YK  NM+KG P 
Sbjct:   306 ILIEDIAALKPTVFCAVPRVLERIYTGLQQKLSDGGFVKKKLFNFAFKYKHKNMEKGQPH 365

Query:   363 NKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCS 422
              +A+P+ D +VF K++E  GG ++ +LSGAAPL  H+E FLRV + A + QGYGLTESC 
Sbjct:   366 EQASPIADKIVFKKVKEGLGGNVRLILSGAAPLAAHIESFLRVVACAHVLQGYGLTESCG 425

Query:   423 GCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKR 482
             G F S+ +  +M+GTVG P+  V+ RLESVPEMGYDAL+S PRGEIC+RG TLFSGYYKR
Sbjct:   426 GTFVSIPNELSMLGTVGPPVPNVDIRLESVPEMGYDALASNPRGEICIRGKTLFSGYYKR 485

Query:   483 PDLTEEVIVDGWFHTGDIGEWQP 505
              DLT+EV +DGW HTGD+GEWQP
Sbjct:   486 EDLTQEVFIDGWLHTGDVGEWQP 508

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0001676 "long-chain fatty acid metabolic process" evidence=RCA;IDA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0002213 "defense response to insect" evidence=RCA

GO:0006633 "fatty acid biosynthetic process" evidence=RCA;TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2138141 LACS4 "long-chain acyl-CoA synthetase 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 1524 (541.5 bits), Expect = 2.4e-156, P = 2.4e-156
 Identities = 281/502 (55%), Positives = 368/502 (73%)

Query:     5 YTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGG 64
             Y  +VEE +  +DG+PS GPVYR I+AKDG  +   G++S W  F  S ++ PNN MLG 
Sbjct:     7 YIFQVEEGKEGSDGRPSVGPVYRSIFAKDGFPDPIEGMDSCWDVFRMSVEKYPNNPMLGR 66

Query:    65 RKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNS 124
             R++ DGK G YVW TYQEVYD  ++ G+++RS GV    +CGIYG+N PEWII+MEACN+
Sbjct:    67 REIVDGKPGKYVWQTYQEVYDIVMKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEACNA 126

Query:   125 QAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVS 184
               +  VPLYDTLGA+AVEFII+H+EVSI FV+E KI  +    P    Y+KT+VSF  VS
Sbjct:   127 HGLYCVPLYDTLGADAVEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVSFGGVS 186

Query:   185 SSQKKEAEELGVSCFSWEEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQ 243
               QK+EAE  G+  ++W+EFL+LG     +LP KKK++I TIMYTSGTTG+PKGV+++N+
Sbjct:   187 REQKEEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMISNE 246

Query:   244 AIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRY 303
             +IV  +  V ++     +  + +D Y S+LPLAHI+D++IE   I  G +IGFWRGDV+ 
Sbjct:   247 SIVTLIAGVIRLLKSANEALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGDVKL 306

Query:   304 LMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQN 363
             L+ED+ ELKPT+F  VPRV DR+Y+G+  K+S GG L K +F+ A++YK G MKKG    
Sbjct:   307 LIEDLAELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFIFDSAFSYKFGYMKKGQSHV 366

Query:   364 KAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSG 423
             +A+PL D LVFSK+++  GG ++ +LSGAAPL  HVE FLRV +   + QGYGLTESC+G
Sbjct:   367 EASPLFDKLVFSKVKQGLGGNVRIILSGAAPLASHVESFLRVVACCHVLQGYGLTESCAG 426

Query:   424 CFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRP 483
              F SL D   M+GTVG P+  V+ RLESVPEM YDAL+S  RGEIC+RG TLFSGYYKR 
Sbjct:   427 TFVSLPDELGMLGTVGPPVPNVDIRLESVPEMEYDALASTARGEICIRGKTLFSGYYKRE 486

Query:   484 DLTEEVIVDGWFHTGDIGEWQP 505
             DLT+EV++DGW HTGD+GEWQP
Sbjct:   487 DLTKEVLIDGWLHTGDVGEWQP 508

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0001676 "long-chain fatty acid metabolic process" evidence=RCA;IDA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0002213 "defense response to insect" evidence=RCA

GO:0006633 "fatty acid biosynthetic process" evidence=RCA;TAS

GO:0009611 "response to wounding" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

TAIR|locus:2136148 AT4G11030 [Arabidopsis thaliana (taxid:3702)]

 Score = 1521 (540.5 bits), Expect = 4.9e-156, P = 4.9e-156
 Identities = 280/502 (55%), Positives = 362/502 (72%)

Query:     5 YTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGG 64
             +  +VE A+ A DG PS GPVYR  +A++G      G++S W  F  + ++ PNN+MLG 
Sbjct:     7 FIFEVEAAKEATDGNPSVGPVYRSTFAQNGFPNPIDGIQSCWDIFRTAVEKYPNNRMLGR 66

Query:    65 RKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNS 124
             R++S+GK G YVW TY+EVYD  I+ G+++RS G+  G++CGIYG NC EWII+MEACN+
Sbjct:    67 REISNGKAGKYVWKTYKEVYDIVIKLGNSLRSCGIKEGEKCGIYGINCCEWIISMEACNA 126

Query:   125 QAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVS 184
               +  VPLYDTLGA AVEFII+HAEVSIAFV+E KIP +    P    Y+KT+VSF  V 
Sbjct:   127 HGLYCVPLYDTLGAGAVEFIISHAEVSIAFVEEKKIPELFKTCPNSTKYMKTVVSFGGVK 186

Query:   185 SSQKKEAEELGVSCFSWEEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQ 243
               QK+EAE+LG+   SW+EFL+LG     ELP KK ++I TIMYTSGTTG+PKGV+++N+
Sbjct:   187 PEQKEEAEKLGLVIHSWDEFLKLGEGKQYELPIKKPSDICTIMYTSGTTGDPKGVMISNE 246

Query:   244 AIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRY 303
             +IV     V           SE+D Y S+LPLAH++D+ IE   I  G SIGFWRGDV+ 
Sbjct:   247 SIVTITTGVMHFLGNVNASLSEKDVYISYLPLAHVFDRAIEECIIQVGGSIGFWRGDVKL 306

Query:   304 LMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQN 363
             L+ED+ ELKP++F  VPRV DR+YTG+  K+S GG   KK+F+ A++YK GNMKKG    
Sbjct:   307 LIEDLGELKPSIFCAVPRVLDRVYTGLQQKLSGGGFFKKKVFDVAFSYKFGNMKKGQSHV 366

Query:   364 KAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSG 423
              A+P  D LVF+K+++  GG ++ +LSGAAPL  H+E FLRV +   + QGYGLTESC+G
Sbjct:   367 AASPFCDKLVFNKVKQGLGGNVRIILSGAAPLASHIESFLRVVACCNVLQGYGLTESCAG 426

Query:   424 CFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRP 483
              F +  D  +M+GTVG P+  V+ RLESVPEM YDAL S PRGEIC+RG TLFSGYYKR 
Sbjct:   427 TFATFPDELDMLGTVGPPVPNVDIRLESVPEMNYDALGSTPRGEICIRGKTLFSGYYKRE 486

Query:   484 DLTEEVIVDGWFHTGDIGEWQP 505
             DLT+EV +DGW HTGD+GEWQP
Sbjct:   487 DLTKEVFIDGWLHTGDVGEWQP 508

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0001676 "long-chain fatty acid metabolic process" evidence=RCA;IDA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0002213 "defense response to insect" evidence=RCA

GO:0006633 "fatty acid biosynthetic process" evidence=RCA;TAS

TAIR|locus:2065195 LACS1 "AT2G47240" [Arabidopsis thaliana (taxid:3702)]

 Score = 1274 (453.5 bits), Expect = 7.3e-130, P = 7.3e-130
 Identities = 243/504 (48%), Positives = 325/504 (64%)

Query:     3 ETYTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQML 62
             +++  KVEE     DGKPS GPVYR + ++ G     + + + W  F  S ++ P+N ML
Sbjct:     2 KSFAAKVEEGVKGIDGKPSVGPVYRNLLSEKGFPPIDSEITTAWDIFSKSVEKFPDNNML 61

Query:    63 GGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC 122
             G R++ D KVGPY+W TY+EVY+  ++ GSA+R+ G  PG R GIYG NCP+WIIAMEAC
Sbjct:    62 GWRRIVDEKVGPYMWKTYKEVYEEVLQIGSALRAAGAEPGSRVGIYGVNCPQWIIAMEAC 121

Query:   123 NSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFAN 182
              +  +  VPLYDTLG+ AV++I+ HAE+   FVQ+ KI  +L    +C   LK IVSF N
Sbjct:   122 AAHTLICVPLYDTLGSGAVDYIVEHAEIDFVFVQDTKIKGLLEPDCKCAKRLKAIVSFTN 181

Query:   183 VSSSQKKEAEELGVSCFSWEEFLQLGTLDCE-LPPKKKTNISTIMYTSGTTGEPKGVVLT 241
             VS     +A E+GV  +SW +FL +G    E   P K  NI TIMYTSGT+G+PKGVVLT
Sbjct:   182 VSDELSHKASEIGVKTYSWIDFLHMGREKPEDTNPPKAFNICTIMYTSGTSGDPKGVVLT 241

Query:   242 NQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDV 301
             +QA+   V+ +D          + +D Y SFLPLAHI D++ E +   KG S+G++ G++
Sbjct:   242 HQAVATFVVGMDLYMDQFEDKMTHDDVYLSFLPLAHILDRMNEEYFFRKGASVGYYHGNL 301

Query:   302 RYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMP 361
               L +DIQELKPT  +GVPRV++RI+ GI   +       + +F   Y +KL  + +G  
Sbjct:   302 NVLRDDIQELKPTYLAGVPRVFERIHEGIQKALQELNPRRRFIFNALYKHKLAWLNRGYS 361

Query:   362 QNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESC 421
              +KA+P+ D + F KIR+  GGR++ ++SG APL   +EEFLRVT    + QGYGLTE+ 
Sbjct:   362 HSKASPMADFIAFRKIRDKLGGRIRLLVSGGAPLSPEIEEFLRVTCCCFVVQGYGLTETL 421

Query:   422 SGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYK 481
              G      D   M+GTVG+P    E RLE V EMGYD L   P GEIC+RG  +FSGYYK
Sbjct:   422 GGTALGFPDEMCMLGTVGIPAVYNEIRLEEVSEMGYDPLGENPAGEICIRGQCMFSGYYK 481

Query:   482 RPDLTEEVIVDGWFHTGDIGEWQP 505
              P+LTEEV+ DGWFHTGDIGE  P
Sbjct:   482 NPELTEEVMKDGWFHTGDIGEILP 505

GO:0001676 "long-chain fatty acid metabolic process" evidence=ISS;IDA

GO:0003824 "catalytic activity" evidence=IEA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0006633 "fatty acid biosynthetic process" evidence=ISS

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0010025 "wax biosynthetic process" evidence=IMP

GO:0010143 "cutin biosynthetic process" evidence=IMP

GO:0031957 "very long-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

TAIR|locus:2083013 LACS6 "AT3G05970" [Arabidopsis thaliana (taxid:3702)]

 Score = 867 (310.3 bits), Expect = 9.9e-87, P = 9.9e-87
 Identities = 193/448 (43%), Positives = 262/448 (58%)

Query:    62 LGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA 121
             LG R   DG VG Y W+TY E   A    GS +   G+  G   GIY  N PEW+I   A
Sbjct:   103 LGTRVRVDGTVGDYKWMTYGEAGTARTALGSGLVHHGIPMGSSVGIYFINRPEWLIVDHA 162

Query:   122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFA 181
             C+S +   VPLYDTLG +AV+FI+NHA V   F     + S+LSCL      ++ +V   
Sbjct:   163 CSSYSYVSVPLYDTLGPDAVKFIVNHATVQAIFCVAETLNSLLSCLSEMPS-VRLVVVVG 221

Query:   182 NVSSSQKKEAEELGVSCFSWEEFLQLGTLDCE--LPPKKKTNISTIMYTSGTTGEPKGVV 239
              +  S        GV   S+   L  G  + +   PPK   +++TI YTSGTTG PKGVV
Sbjct:   222 GLIESLPSLPSSSGVKVVSYSVLLNQGRSNPQRFFPPKPD-DVATICYTSGTTGTPKGVV 280

Query:   240 LTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG 299
             LT+  ++A V      F V  K  S  D Y S+LPLAHIY++  +   ++ G ++GF++G
Sbjct:   281 LTHANLIANVAG--SSFSV--KFFSS-DVYISYLPLAHIYERANQILTVYFGVAVGFYQG 335

Query:   300 DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKG 359
             D   L++D+  L+PT+FS VPR+Y+RIY GI N + + G L ++LF  AYN K   +  G
Sbjct:   336 DNMKLLDDLAALRPTVFSSVPRLYNRIYAGIINAVKTSGGLKERLFNAAYNAKKQALLNG 395

Query:   360 MPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTE 419
                  A+P+ D LVF+KI++  GGR++ M SGA+PL   V EFL+V  G  +T+GYG+TE
Sbjct:   396 ---KSASPIWDRLVFNKIKDRLGGRVRFMTSGASPLSPEVMEFLKVCFGGRVTEGYGMTE 452

Query:   420 SCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSV-PRGEICLRGNTLFSG 478
             + S   + + +  N+ G VG P    E +L  VPEM Y +     PRGEIC+RG  +F+G
Sbjct:   453 T-SCVISGMDEGDNLTGHVGSPNPACEVKLVDVPEMNYTSADQPHPRGEICVRGPIIFTG 511

Query:   479 YYKRPDLTEEVI-VDGWFHTGDIGEWQP 505
             YYK    T+EVI  DGW HTGDIG W P
Sbjct:   512 YYKDEIQTKEVIDEDGWLHTGDIGLWLP 539

GO:0001676 "long-chain fatty acid metabolic process" evidence=RCA;IDA;TAS

GO:0003824 "catalytic activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IDA;TAS

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0005777 "peroxisome" evidence=IDA

GO:0010193 "response to ozone" evidence=IEP

GO:0016020 "membrane" evidence=IDA

GO:0002213 "defense response to insect" evidence=RCA

GO:0006633 "fatty acid biosynthetic process" evidence=RCA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

TAIR|locus:2143661 LACS7 "AT5G27600" [Arabidopsis thaliana (taxid:3702)]

 Score = 848 (303.6 bits), Expect = 1.0e-84, P = 1.0e-84
 Identities = 188/462 (40%), Positives = 264/462 (57%)

Query:    49 FCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIY 108
             F  + +    N+ LG R  SDG +G Y W+TY E        GS +   GVN GD  G+Y
Sbjct:    90 FVHAVETYAENKYLGTRVRSDGTIGEYSWMTYGEAASERQAIGSGLLFHGVNQGDCVGLY 149

Query:   109 GSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLP 168
               N PEW++   AC + +   VPLYDTLG +AV+F++NHA +   F     +  +LS L 
Sbjct:   150 FINRPEWLVVDHACAAYSFVSVPLYDTLGPDAVKFVVNHANLQAIFCVPQTLNILLSFLA 209

Query:   169 RCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCE-LPPKKKTNISTIMY 227
                  ++ IV                GV+  S+++ L  G        P K  +I+TI Y
Sbjct:   210 EIPS-IRLIVVVGGADEHLPSLPRGTGVTIVSYQKLLSQGRSSLHPFSPPKPEDIATICY 268

Query:   228 TSGTTGEPKGVVLTNQAIVAEVL--SVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIET 285
             TSGTTG PKGVVLT+  ++A V   SV+  F  +       D Y S+LPLAHIY++  + 
Sbjct:   269 TSGTTGTPKGVVLTHGNLIANVAGSSVEAEFFPS-------DVYISYLPLAHIYERANQI 321

Query:   286 HCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLF 345
               ++ G ++GF++GDV  LM+D   L+PT+F  VPR+Y+RIY GI++ + S G + K+LF
Sbjct:   322 MGVYGGVAVGFYQGDVFKLMDDFAVLRPTIFCSVPRLYNRIYDGITSAVKSSGVVKKRLF 381

Query:   346 EFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRV 405
             E AYN K   +  G  +  +A   D LVF+KI+E  GGR++ M SGA+PL   V +FLR+
Sbjct:   382 EIAYNSKKQAIING--RTPSA-FWDKLVFNKIKEKLGGRVRFMGSGASPLSPDVMDFLRI 438

Query:   406 TSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSS-VP 464
               G  + +GYG+TE+ S   +++ D  N+ G VG P    E +L  VPEM Y +     P
Sbjct:   439 CFGCSVREGYGMTET-SCVISAMDDGDNLSGHVGSPNPACEVKLVDVPEMNYTSDDQPYP 497

Query:   465 RGEICLRGNTLFSGYYKRPDLTEEVIV-DGWFHTGDIGEWQP 505
             RGEIC+RG  +F GYYK  + T E++  DGW HTGDIG W P
Sbjct:   498 RGEICVRGPIIFKGYYKDEEQTREILDGDGWLHTGDIGLWLP 539

GO:0001676 "long-chain fatty acid metabolic process" evidence=IDA;TAS

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IDA;TAS

GO:0006631 "fatty acid metabolic process" evidence=TAS

GO:0005777 "peroxisome" evidence=IDA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009651 "response to salt stress" evidence=IEP

GO:0010193 "response to ozone" evidence=IEP

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0007031 "peroxisome organization" evidence=RCA

GO:0009610 "response to symbiotic fungus" evidence=RCA

WB|WBGene00022037 acs-13 [Caenorhabditis elegans (taxid:6239)]

 Score = 815 (292.0 bits), Expect = 3.2e-81, P = 3.2e-81
 Identities = 183/461 (39%), Positives = 270/461 (58%)

Query:    55 RIPNN-QMLGGR-KVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPG--DRCGIYGS 110
             R+ NN  MLG R K SDG + PYVW +Y  + + A     A R  GV  G  +  GIY  
Sbjct:   120 RLSNNGPMLGRRVKQSDGSI-PYVWESYNTILERADNVSVAFRELGVPTGNAENIGIYSK 178

Query:   111 NCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQE-NKIPSILSCLPR 169
             N  EWII   A  + +   VP+Y+TLG+ A  FI+N AE+ I    + +K   +L    +
Sbjct:   179 NRAEWIITEFATYNYSNVIVPIYETLGSEASIFILNQAEIKIVVCDDISKATGLLKFKEQ 238

Query:   170 CCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLG----TLDCELPPKKKTNISTI 225
             C   L T+V    V+   K  A  LGV   ++E+  ++G    T    +PP  + +++TI
Sbjct:   239 CPS-LSTLVVMEPVTDELKTTASSLGVEVLTFEDLEKIGKNAKTRPAHIPPTPE-DLATI 296

Query:   226 MYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIET 285
              YTSGTTG PKGV+LT+  ++A+ + +D  F  +G   +  D+  SFLPLAH+ +++IE+
Sbjct:   297 CYTSGTTGTPKGVMLTHANVIADGVCMD-FFKHSGIAAT--DSMISFLPLAHMLERVIES 353

Query:   286 HCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLF 345
              C   G  +GF+RGD+R L EDI+ELKPT+   VPRV +R+Y  + ++++    L K LF
Sbjct:   354 VCFCVGAKVGFYRGDIRVLAEDIKELKPTVVPVVPRVLNRLYDKVMSEVNKS-TLKKMLF 412

Query:   346 EFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRV 405
             +FA +YK  +M     +N      D+LVF KIRE FGGR++ M++G+APL  +V  F+R 
Sbjct:   413 DFAISYKARDMANFNIRNDG--FFDNLVFKKIREGFGGRVRLMITGSAPLSTNVLTFVRA 470

Query:   406 TSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPR 465
               G  + +GYG TE  + C  S+ +  ++ G VG+ + + + +L  VPE+ Y A      
Sbjct:   471 AMGCVVVEGYGQTECVAACTVSM-EGDSLAGHVGMVIPSCQIKLVDVPELNYYAKDQA-- 527

Query:   466 GEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGDIGEWQP 505
             GE+C++G+ +F GYYK    T+E I  DGW HTGDIG W P
Sbjct:   528 GEVCVKGHIIFKGYYKNEQQTKETIDEDGWLHTGDIGRWTP 568

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

DICTYBASE|DDB_G0269474 fcsB "fatty acyl-CoA synthetase" [Dictyostelium discoideum (taxid:44689)]

 Score = 795 (284.9 bits), Expect = 4.2e-79, P = 4.2e-79
 Identities = 174/493 (35%), Positives = 271/493 (54%)

Query:    19 KP-SGGPVYRCIYAKDGLLE--SPAGLESPWQFFCDSAKRIPNNQMLGGRKV-SDGKVGP 74
             KP +GG + R     D L+       + + +     S K+    +  G RK  S+G +G 
Sbjct:    36 KPENGGRIRRNSACADHLISFLEDDEIYTLYDSLVKSCKKYGERKCFGERKKDSNGNLGK 95

Query:    75 YVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYD 134
             + W++Y    +        +   G+ P  + GI+  N  EW+I   A   Q+   V  Y+
Sbjct:    96 FEWISYNTYLERCEYIQQGLCELGLKPKSKVGIFSKNRLEWLIVHSASFIQSYCVVSFYE 155

Query:   135 TLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEEL 194
             TLG  ++ ++  HAE+ +AF     +   L  + +    LKTI+ F ++       A+EL
Sbjct:   156 TLGVESLSYVTEHAEIGLAFCSAETLQKTLD-IAKGVKVLKTIICFDSIDKEHYNIAKEL 214

Query:   195 GVSCFSWEEFLQLGT----LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVL 250
             GV+ ++++E ++ G          PP   T +STIMYTSGTTG PKGV++T++ + + V 
Sbjct:   215 GVTLYTYDEIMKKGKEANGKHKHTPPTPDT-LSTIMYTSGTTGPPKGVMITHKNLTSVVC 273

Query:   251 SVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQE 310
             +V   F+   KV  + D ++S+LP AH+ ++++     H G +IG + GD+  ++ +++ 
Sbjct:   274 AVSD-FI---KVY-DTDVHYSYLPYAHVLERVVILAAFHFGAAIGIFSGDISNILVEVKL 328

Query:   311 LKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLD 370
             L PT+F GVPRV++RI T +  +IS   AL + LF  AYN K  +++ G        +LD
Sbjct:   329 LSPTLFIGVPRVFERIKTNVFKEISKKPALLRTLFNGAYNLKYLSIQHGFKLPIIEKVLD 388

Query:   371 SLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLAD 430
              + FSKI++A GG+++ +LSG+APL    E FLRV     + QGYG +E C G      D
Sbjct:   389 LVFFSKIKQALGGKVRVILSGSAPLSFDTEVFLRVVMCCCVLQGYGASEGCGGDACKRLD 448

Query:   431 VFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI 490
                 +GT+G P  + E +L  VPE+GYD+   V  GE+CLRG ++ SGYYK  + T E  
Sbjct:   449 D-ESVGTIGPPFASNEIKLVDVPELGYDSNGEVQTGEVCLRGPSISSGYYKDEEKTREEF 507

Query:   491 VDGWFHTGDIGEW 503
              DGWFHTGDIG W
Sbjct:   508 KDGWFHTGDIGRW 520

GO:0006631 "fatty acid metabolic process" evidence=IEA;ISS

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IEA;ISS

GO:0001676 "long-chain fatty acid metabolic process" evidence=IEA;ISS

GO:0008152 "metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

DICTYBASE|DDB_G0269242 fcsA "long-chain-fatty-acid-CoA ligase" [Dictyostelium discoideum (taxid:44689)]

 Score = 774 (277.5 bits), Expect = 7.1e-77, P = 7.1e-77
 Identities = 170/453 (37%), Positives = 267/453 (58%)

Query:    58 NNQMLGGRKV-SDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWI 116
             ++  LG R++ +DGK G Y W++Y++    A   GSA+   G+N GDR GI+  N PEW+
Sbjct:    67 DSNFLGIRELLADGKRGDYKWISYKQACIRANNIGSALVQLGLNKGDRIGIFSINRPEWV 126

Query:   117 IAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKT 176
             ++  A  + ++  V LY TLGANA+E+++NH+E+S+   +   +  ILS +P   +  KT
Sbjct:   127 LSDMAAMNHSLVPVALYATLGANAIEYVVNHSEISVLLCEGKNVEKILS-MPGTTI--KT 183

Query:   177 IVSFANV-SSSQKKEAEELGVSCFSWEEFLQLGTLDC---ELPPKKKTNISTIMYTSGTT 232
             IVS+  +  ++  K  +   V  +   +F +LG  +    E+P  +  ++ T++YTSG+T
Sbjct:   184 IVSYDPLPQATLDKFKDNENVKLYLLSDFEKLGEQNPAQHEVPSPE--DLCTLLYTSGST 241

Query:   233 GEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGC 292
             G PKGV+LT+  +V+EV   +  F   G +   ED + S+LPLAH +++ + +   + G 
Sbjct:   242 GNPKGVMLTHTNMVSEVAGAN--FSPAGVI--PEDVHMSYLPLAHSFERAVVSLMCYVGG 297

Query:   293 SIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYK 352
              IGF+ G +  L  DIQ L+PT   G PRV+ R++  +   +++   L K LF +  N K
Sbjct:   298 QIGFFSGLIPELFNDIQVLRPTFLCGAPRVWQRLHDKLWFTVNNDSWLKKFLFNWGLNSK 357

Query:   353 LGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLT 412
                ++ G       P+ D LVFSK ++  GGR++ +LSG+APL   + EFLR     P+ 
Sbjct:   358 QSALRLG----STTPIWDKLVFSKTKDRLGGRVKFILSGSAPLDPKLAEFLRACFCCPVV 413

Query:   413 QGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSS-VPRGEICLR 471
              GYGL+E+  G   +  +  N +G VG P++  E +L  VPEM Y +     PRGE+C+R
Sbjct:   414 SGYGLSENVGGASVAYPED-NNVGHVGPPLSACEMKLIDVPEMNYFSTDKPCPRGEVCIR 472

Query:   472 GNTLFSGYYKRPDLTEEVIV-DGWFHTGDIGEW 503
             G  +F GY+K P+ T+E +  DGWFHTGDIG W
Sbjct:   473 GFNVFKGYFKDPEKTKEDLKEDGWFHTGDIGRW 505

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0005769 "early endosome" evidence=IDA

GO:0010009 "external side of endosome membrane" evidence=IDA

GO:0006631 "fatty acid metabolic process" evidence=IEA;IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IEA;TAS

GO:0001676 "long-chain fatty acid metabolic process" evidence=IEA;TAS

GO:0008152 "metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0010008 "endosome membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9XIA9	LACS2_ARATH	6, ., 2, ., 1, ., 3	0.6706	0.9763	0.7458	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.2.1	0.963
3rd Layer	6.2.1.3	0.946

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pm.C_LG_IX0278	long-chain-fatty-acid-CoA ligase (EC-6.2.1.3) (658 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_fgenesh4_pm.C_290034	acyl-CoA oxidase (EC-1.3.3.6) (664 aa)						•			0.901
	grail3.0096010101	acyl-CoA oxidase (EC-1.3.3.6) (639 aa)						•			0.900
	fgenesh4_pg.C_scaffold_3547000001	annotation not avaliable (326 aa)						•			0.899
	fgenesh4_pg.C_LG_XIX000851	acyl-CoA oxidase (EC-1.3.3.6) (680 aa)						•			0.899
	eugene3.00100112	annotation not avaliable (252 aa)						•			0.899
	estExt_fgenesh4_pm.C_LG_VII0199	acyl-CoA oxidase (EC-1.3.3.6) (689 aa)						•			0.899
	estExt_fgenesh4_pm.C_LG_V0077	acyl-CoA oxidase (EC-1.3.3.6) (691 aa)						•			0.899
	estExt_Genewise1_v1.C_LG_XVI3692	acyl-CoA oxidase (EC-1.3.3.6) (437 aa)						•			0.899
	estExt_Genewise1_v1.C_LG_VI1706	acyl-CoA oxidase (EC-1.3.3.6) (436 aa)						•			0.899
	gw1.XVI.1394.1	hypothetical protein (823 aa)						•			0.800

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	508
PLN02861	660	PLN02861, PLN02861, long-chain-fatty-acid-CoA liga	0.0
PLN02614	666	PLN02614, PLN02614, long-chain acyl-CoA synthetase	0.0
PLN02430	660	PLN02430, PLN02430, long-chain-fatty-acid-CoA liga	0.0
cd05927	539	cd05927, LC-FACS_euk, Eukaryotic long-chain fatty	0.0
PLN02736	651	PLN02736, PLN02736, long-chain acyl-CoA synthetase	1e-144
COG1022	613	COG1022, FAA1, Long-chain acyl-CoA synthetases (AM	1e-116
PLN02387	696	PLN02387, PLN02387, long-chain-fatty-acid-CoA liga	3e-86
PTZ00216	700	PTZ00216, PTZ00216, acyl-CoA synthetase; Provision	2e-83
pfam00501	412	pfam00501, AMP-binding, AMP-binding enzyme	5e-79
cd05907	456	cd05907, VL_LC_FACS_like, Long-chain fatty acid Co	2e-77
cd05932	504	cd05932, LC_FACS_bac, Bacterial long-chain fatty a	1e-76
cd05933	594	cd05933, ACSBG_like, Bubblegum-like very long-chai	5e-62
COG0318	534	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/	1e-61
cd05936	468	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain	2e-57
cd05911	487	cd05911, Firefly_Luc_like, Firefly luciferase of l	1e-51
PRK06187	521	PRK06187, PRK06187, long-chain-fatty-acid--CoA lig	3e-50
PRK07656	513	PRK07656, PRK07656, long-chain-fatty-acid--CoA lig	2e-49
PTZ00342	746	PTZ00342, PTZ00342, acyl-CoA synthetase; Provision	9e-45
cd05917	347	cd05917, FACL_like_2, Uncharacterized subfamily of	2e-37
cd05929	342	cd05929, BACL_like, Bacterial Bile acid CoA ligase	5e-37
PRK05605	573	PRK05605, PRK05605, long-chain-fatty-acid--CoA lig	9e-35
cd04433	338	cd04433, AFD_class_I, Adenylate forming domain, Cl	1e-34
cd05904	504	cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)	2e-34
cd12118	520	cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt	8e-34
cd05912	407	cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase	1e-33
cd05941	430	cd05941, MCS, Malonyl-CoA synthetase (MCS)	2e-33
COG0365	528	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat	8e-33
TIGR01923	436	TIGR01923, menE, O-succinylbenzoate-CoA ligase	1e-32
PRK06710	563	PRK06710, PRK06710, long-chain-fatty-acid--CoA lig	3e-30
PRK03640	483	PRK03640, PRK03640, O-succinylbenzoic acid--CoA li	7e-29
PRK06839	496	PRK06839, PRK06839, acyl-CoA synthetase; Validated	2e-27
cd05926	345	cd05926, FACL_fum10p_like, Subfamily of fatty acid	4e-27
PRK07787	471	PRK07787, PRK07787, acyl-CoA synthetase; Validated	1e-26
PRK09088	488	PRK09088, PRK09088, acyl-CoA synthetase; Validated	1e-26
cd05909	489	cd05909, AAS_C, C-terminal domain of the acyl-acyl	7e-25
cd05903	437	cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li	1e-23
PRK08751	560	PRK08751, PRK08751, putative long-chain fatty acyl	1e-23
COG1020	642	COG1020, EntF, Non-ribosomal peptide synthetase mo	1e-22
PLN02246	537	PLN02246, PLN02246, 4-coumarate--CoA ligase	3e-22
cd05959	506	cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and	4e-22
PRK07059	557	PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig	4e-22
PRK12583	558	PRK12583, PRK12583, acyl-CoA synthetase; Provision	2e-21
cd05935	430	cd05935, LC_FACS_like, Putative long-chain fatty a	4e-21
cd05907	456	cd05907, VL_LC_FACS_like, Long-chain fatty acid Co	3e-20
TIGR03205	541	TIGR03205, pimA, dicarboxylate--CoA ligase PimA	3e-20
PRK07514	504	PRK07514, PRK07514, malonyl-CoA synthase; Validate	7e-20
PRK08316	523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	2e-19
cd05944	359	cd05944, FACL_like_4, Uncharacterized subfamily of	2e-19
cd12119	517	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth	3e-19
TIGR03098	517	TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form	3e-18
PRK05677	562	PRK05677, PRK05677, long-chain-fatty-acid--CoA lig	9e-18
cd05920	483	cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l	2e-17
PRK07529	632	PRK07529, PRK07529, AMP-binding domain protein; Va	2e-17
PLN02479	567	PLN02479, PLN02479, acetate-CoA ligase	3e-16
cd05922	350	cd05922, FACL_like_6, Uncharacterized subfamily of	4e-16
PRK08974	560	PRK08974, PRK08974, long-chain-fatty-acid--CoA lig	4e-16
cd05919	436	cd05919, BCL_like, Benzoate CoA ligase (BCL) and s	5e-16
PLN02574	560	PLN02574, PLN02574, 4-coumarate--CoA ligase-like	2e-15
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	4e-15
cd05930	445	cd05930, A_NRPS, The adenylation domain of nonribo	7e-15
cd05921	559	cd05921, FCS, Feruloyl-CoA synthetase (FCS)	1e-14
PRK08162	545	PRK08162, PRK08162, acyl-CoA synthetase; Validated	2e-14
PRK12492	562	PRK12492, PRK12492, long-chain-fatty-acid--CoA lig	2e-14
TIGR01733	409	TIGR01733, AA-adenyl-dom, amino acid adenylation d	2e-14
PRK07798	533	PRK07798, PRK07798, acyl-CoA synthetase; Validated	9e-14
PRK06145	497	PRK06145, PRK06145, acyl-CoA synthetase; Validated	5e-13
PTZ00297	1452	PTZ00297, PTZ00297, pantothenate kinase; Provision	8e-13
PLN02330	546	PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1	1e-12
PRK06188	524	PRK06188, PRK06188, acyl-CoA synthetase; Validated	2e-12
PRK07470	528	PRK07470, PRK07470, acyl-CoA synthetase; Validated	2e-12
PRK08180	614	PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe	5e-12
cd05908	499	cd05908, A_NRPS_MycA_like, The adenylation domain	8e-12
PRK05620	576	PRK05620, PRK05620, long-chain-fatty-acid--CoA lig	1e-11
cd12117	474	cd12117, A_NRPS_Srf_like, The adenylation domain o	2e-11
cd05906	560	cd05906, A_NRPS_TubE_like, The adenylation domain	4e-11
PRK08316	523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	5e-11
TIGR02262	508	TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil	6e-11
PRK06178	567	PRK06178, PRK06178, acyl-CoA synthetase; Validated	7e-11
PRK06188	524	PRK06188, PRK06188, acyl-CoA synthetase; Validated	8e-11
cd05967	607	cd05967, PrpE, Propionyl-CoA synthetase (PrpE)	8e-11
PRK07786	542	PRK07786, PRK07786, long-chain-fatty-acid--CoA lig	1e-10
cd12119	517	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth	2e-10
PRK06178	567	PRK06178, PRK06178, acyl-CoA synthetase; Validated	2e-10
PRK08315	559	PRK08315, PRK08315, AMP-binding domain protein; Va	2e-10
PRK09192	579	PRK09192, PRK09192, acyl-CoA synthetase; Validated	2e-10
cd12114	476	cd12114, A_NRPS_TlmIV_like, The adenylation domain	2e-10
cd05943	616	cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac	3e-10
PRK08008	517	PRK08008, caiC, putative crotonobetaine/carnitine-	4e-10
PRK05852	534	PRK05852, PRK05852, acyl-CoA synthetase; Validated	4e-10
PRK12582	624	PRK12582, PRK12582, acyl-CoA synthetase; Provision	5e-10
PRK08314	546	PRK08314, PRK08314, long-chain-fatty-acid--CoA lig	6e-10
TIGR01733	409	TIGR01733, AA-adenyl-dom, amino acid adenylation d	7e-10
PRK08315	559	PRK08315, PRK08315, AMP-binding domain protein; Va	7e-10
PRK07786	542	PRK07786, PRK07786, long-chain-fatty-acid--CoA lig	8e-10
PRK08162	545	PRK08162, PRK08162, acyl-CoA synthetase; Validated	1e-09
cd05970	537	cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s	1e-09
cd05931	547	cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)	1e-09
PRK13295	547	PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig	1e-09
cd05914	448	cd05914, FACL_like_3, Uncharacterized subfamily of	1e-09
PRK08314	546	PRK08314, PRK08314, long-chain-fatty-acid--CoA lig	2e-09
cd05972	430	cd05972, MACS_like, Medium-chain acyl-CoA syntheta	3e-09
PRK09029	458	PRK09029, PRK09029, O-succinylbenzoic acid--CoA li	4e-09
cd05971	439	cd05971, MACS_like_3, Uncharacterized subfamily of	8e-09
PRK06087	547	PRK06087, PRK06087, short chain acyl-CoA synthetas	9e-09
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	1e-08
cd05903	437	cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li	2e-08
PRK06018	542	PRK06018, PRK06018, putative acyl-CoA synthetase;	2e-08
cd05973	440	cd05973, MACS_like_2, Uncharacterized subfamily of	2e-08
cd05919	436	cd05919, BCL_like, Benzoate CoA ligase (BCL) and s	3e-08
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	3e-08
PRK06334	539	PRK06334, PRK06334, long chain fatty acid--[acyl-c	4e-08
cd05941	430	cd05941, MCS, Malonyl-CoA synthetase (MCS)	5e-08
TIGR03208	538	TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate	5e-08
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	9e-08
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	1e-07
cd05945	447	cd05945, DltA, D-alanine:D-alanyl carrier protein	1e-07
cd05945	447	cd05945, DltA, D-alanine:D-alanyl carrier protein	1e-07
PRK08008	517	PRK08008, caiC, putative crotonobetaine/carnitine-	2e-07
cd05971	439	cd05971, MACS_like_3, Uncharacterized subfamily of	2e-07
PRK06155	542	PRK06155, PRK06155, crotonobetaine/carnitine-CoA l	2e-07
PRK06155	542	PRK06155, PRK06155, crotonobetaine/carnitine-CoA l	2e-07
PRK08633	1146	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola	2e-07
PRK08276	502	PRK08276, PRK08276, long-chain-fatty-acid--CoA lig	2e-07
PRK06087	547	PRK06087, PRK06087, short chain acyl-CoA synthetas	3e-07
PRK08633	1146	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola	3e-07
PRK04319	570	PRK04319, PRK04319, acetyl-CoA synthetase; Provisi	3e-07
cd12117	474	cd12117, A_NRPS_Srf_like, The adenylation domain o	4e-07
PRK00174	637	PRK00174, PRK00174, acetyl-CoA synthetase; Provisi	4e-07
cd05906	560	cd05906, A_NRPS_TubE_like, The adenylation domain	5e-07
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	5e-07
PLN03102	579	PLN03102, PLN03102, acyl-activating enzyme; Provis	6e-07
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	7e-07
cd05935	430	cd05935, LC_FACS_like, Putative long-chain fatty a	8e-07
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	9e-07
cd12116	438	cd12116, A_NRPS_Ta1_like, The adenylation domain o	1e-06
cd12116	438	cd12116, A_NRPS_Ta1_like, The adenylation domain o	1e-06
PRK07008	539	PRK07008, PRK07008, long-chain-fatty-acid--CoA lig	2e-06
TIGR01734	502	TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho	3e-06
cd05968	474	cd05968, AACS_like, Uncharacterized acyl-CoA synth	3e-06
PRK06164	540	PRK06164, PRK06164, acyl-CoA synthetase; Validated	3e-06
cd05972	430	cd05972, MACS_like, Medium-chain acyl-CoA syntheta	4e-06
PRK04813	503	PRK04813, PRK04813, D-alanine--poly(phosphoribitol	6e-06
PLN02860	563	PLN02860, PLN02860, o-succinylbenzoate-CoA ligase	6e-06
PRK06814	1140	PRK06814, PRK06814, acylglycerophosphoethanolamine	7e-06
cd05931	547	cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)	8e-06
TIGR02188	625	TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase	8e-06
cd05966	602	cd05966, ACS, Acetyl-CoA synthetase (also known as	1e-05
PRK07824	358	PRK07824, PRK07824, O-succinylbenzoic acid--CoA li	1e-05
PRK07788	549	PRK07788, PRK07788, acyl-CoA synthetase; Validated	2e-05
cd05937	468	cd05937, FATP_chFAT1_like, Uncharacterized subfami	2e-05
TIGR01217	652	TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase	2e-05
PRK03584	655	PRK03584, PRK03584, acetoacetyl-CoA synthetase; Pr	3e-05
PRK12406	509	PRK12406, PRK12406, long-chain-fatty-acid--CoA lig	4e-05
cd05969	443	cd05969, MACS_like_4, Uncharacterized subfamily of	6e-05
PLN03102	579	PLN03102, PLN03102, acyl-activating enzyme; Provis	7e-05
PRK05850	578	PRK05850, PRK05850, acyl-CoA synthetase; Validated	7e-05
PRK07867	529	PRK07867, PRK07867, acyl-CoA synthetase; Validated	8e-05
PRK09192	579	PRK09192, PRK09192, acyl-CoA synthetase; Validated	9e-05
PRK06145	497	PRK06145, PRK06145, acyl-CoA synthetase; Validated	1e-04
cd05914	448	cd05914, FACL_like_3, Uncharacterized subfamily of	1e-04
cd12116	438	cd12116, A_NRPS_Ta1_like, The adenylation domain o	1e-04
PRK10252	1296	PRK10252, entF, enterobactin synthase subunit F; P	1e-04
PRK09274	552	PRK09274, PRK09274, peptide synthase; Provisional	1e-04
cd05938	535	cd05938, hsFATP2a_ACSVL_like, Fatty acid transport	1e-04
PRK05857	540	PRK05857, PRK05857, acyl-CoA synthetase; Validated	1e-04
PLN02654	666	PLN02654, PLN02654, acetate-CoA ligase	1e-04
PRK10524	629	PRK10524, prpE, propionyl-CoA synthetase; Provisio	1e-04
cd05918	447	cd05918, A_NRPS_SidN3_like, The adenylation (A) do	1e-04
PRK07768	545	PRK07768, PRK07768, long-chain-fatty-acid--CoA lig	1e-04
TIGR02316	628	TIGR02316, propion_prpE, propionate--CoA ligase	1e-04
cd05930	445	cd05930, A_NRPS, The adenylation domain of nonribo	2e-04
PRK06814	1140	PRK06814, PRK06814, acylglycerophosphoethanolamine	2e-04
cd05918	447	cd05918, A_NRPS_SidN3_like, The adenylation (A) do	2e-04
TIGR03208	538	TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate	3e-04
cd05923	495	cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)	3e-04
cd05923	495	cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)	3e-04
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	3e-04
cd05973	440	cd05973, MACS_like_2, Uncharacterized subfamily of	4e-04
PRK07867	529	PRK07867, PRK07867, acyl-CoA synthetase; Validated	4e-04
cd05940	444	cd05940, FATP_FACS, Fatty acid transport proteins	4e-04
PRK12406	509	PRK12406, PRK12406, long-chain-fatty-acid--CoA lig	5e-04
PRK13391	511	PRK13391, PRK13391, acyl-CoA synthetase; Provision	5e-04
PRK08279	600	PRK08279, PRK08279, long-chain-acyl-CoA synthetase	6e-04
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	7e-04
cd05945	447	cd05945, DltA, D-alanine:D-alanyl carrier protein	9e-04
cd05968	474	cd05968, AACS_like, Uncharacterized acyl-CoA synth	0.001
cd05940	444	cd05940, FATP_FACS, Fatty acid transport proteins	0.001
cd12115	449	cd12115, A_NRPS_Sfm_like, The adenylation domain o	0.001
cd05910	455	cd05910, FACL_like_1, Uncharacterized subfamily of	0.001
PRK05857	540	PRK05857, PRK05857, acyl-CoA synthetase; Validated	0.002
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	0.002
cd05974	433	cd05974, MACS_like_1, Uncharacterized subfamily of	0.002
PRK13295	547	PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig	0.003
cd05966	602	cd05966, ACS, Acetyl-CoA synthetase (also known as	0.003
PRK13388	540	PRK13388, PRK13388, acyl-CoA synthetase; Provision	0.003

>gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase

 Score =  986 bits (2550), Expect = 0.0
 Identities = 401/505 (79%), Positives = 455/505 (90%)

Query: 1   MSETYTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQ 60
           M+ETYTVKVEE+RPA  GKPS GPVYR IYAKDGLL+ PA ++SPWQFF D+ K+ PNNQ
Sbjct: 1   MAETYTVKVEESRPATGGKPSAGPVYRSIYAKDGLLDLPADIDSPWQFFSDAVKKYPNNQ 60

Query: 61  MLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120
           MLG R+V+D KVGPYVWLTY+EVYDAAIR GSA+RSRGVNPGDRCGIYGSNCPEWIIAME
Sbjct: 61  MLGRRQVTDSKVGPYVWLTYKEVYDAAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAME 120

Query: 121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSF 180
           ACNSQ ITYVPLYDTLGANAVEFIINHAEVSIAFVQE+KI SILSCLP+C   LKTIVSF
Sbjct: 121 ACNSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKISSILSCLPKCSSNLKTIVSF 180

Query: 181 ANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVL 240
            +VSS QK+EAEELGVSCFSWEEF  +G+LDCELPPK+KT+I TIMYTSGTTGEPKGV+L
Sbjct: 181 GDVSSEQKEEAEELGVSCFSWEEFSLMGSLDCELPPKQKTDICTIMYTSGTTGEPKGVIL 240

Query: 241 TNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGD 300
           TN+AI+AEVLS D +  VT +V +EED+YFS+LPLAH+YDQ+IET+CI KG SIGFW+GD
Sbjct: 241 TNRAIIAEVLSTDHLLKVTDRVATEEDSYFSYLPLAHVYDQVIETYCISKGASIGFWQGD 300

Query: 301 VRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGM 360
           +RYLMED+Q LKPT+F GVPRVYDRIYTGI  KISSGG L KKLF+FAYNYKLGN++KG+
Sbjct: 301 IRYLMEDVQALKPTIFCGVPRVYDRIYTGIMQKISSGGMLRKKLFDFAYNYKLGNLRKGL 360

Query: 361 PQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTES 420
            Q +A+P LD LVF KI+E  GGR++ +LSGAAPLP HVEEFLRVTS + L+QGYGLTES
Sbjct: 361 KQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVEEFLRVTSCSVLSQGYGLTES 420

Query: 421 CSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYY 480
           C GCFTS+A+VF+M+GTVGVPMTT+EARLESVPEMGYDALS VPRGEICLRGNTLFSGY+
Sbjct: 421 CGGCFTSIANVFSMVGTVGVPMTTIEARLESVPEMGYDALSDVPRGEICLRGNTLFSGYH 480

Query: 481 KRPDLTEEVIVDGWFHTGDIGEWQP 505
           KR DLTEEV++DGWFHTGDIGEWQP
Sbjct: 481 KRQDLTEEVLIDGWFHTGDIGEWQP 505

Length = 660

>gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase

 Score =  640 bits (1651), Expect = 0.0
 Identities = 282/502 (56%), Positives = 368/502 (73%), Gaps = 1/502 (0%)

Query: 5   YTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGG 64
           +  +VEE +  +DG+PS GPVYR I+AKDG      G++S W  F  S ++ PNN MLG 
Sbjct: 7   FIFQVEEGKEGSDGRPSVGPVYRSIFAKDGFPNPIEGMDSCWDVFRMSVEKYPNNPMLGR 66

Query: 65  RKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNS 124
           R++ DGK G YVW TYQEVYD  I+ G+++RS GV    +CGIYG+N PEWII+MEACN+
Sbjct: 67  REIVDGKPGKYVWQTYQEVYDIVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEACNA 126

Query: 125 QAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVS 184
             +  VPLYDTLGA AVEFII+H+EVSI FV+E KI  +    P    Y+KT+VSF  VS
Sbjct: 127 HGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVSFGGVS 186

Query: 185 SSQKKEAEELGVSCFSWEEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQ 243
             QK+EAE  G+  ++W+EFL+LG     +LP KKK++I TIMYTSGTTG+PKGV+++N+
Sbjct: 187 REQKEEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMISNE 246

Query: 244 AIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRY 303
           +IV  +  V ++        + +D Y S+LPLAHI+D++IE   I  G +IGFWRGDV+ 
Sbjct: 247 SIVTLIAGVIRLLKSANAALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGDVKL 306

Query: 304 LMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQN 363
           L+ED+ ELKPT+F  VPRV DR+Y+G+  K+S GG L K +F+ A++YK GNMKKG    
Sbjct: 307 LIEDLGELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFVFDSAFSYKFGNMKKGQSHV 366

Query: 364 KAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSG 423
           +A+PL D LVF+K+++  GG ++ +LSGAAPL  HVE FLRV +   + QGYGLTESC+G
Sbjct: 367 EASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHVESFLRVVACCHVLQGYGLTESCAG 426

Query: 424 CFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRP 483
            F SL D  +M+GTVG P+  V+ RLESVPEM YDAL+S PRGEIC+RG TLFSGYYKR 
Sbjct: 427 TFVSLPDELDMLGTVGPPVPNVDIRLESVPEMEYDALASTPRGEICIRGKTLFSGYYKRE 486

Query: 484 DLTEEVIVDGWFHTGDIGEWQP 505
           DLT+EV++DGW HTGD+GEWQP
Sbjct: 487 DLTKEVLIDGWLHTGDVGEWQP 508

Length = 666

>gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase

 Score =  606 bits (1563), Expect = 0.0
 Identities = 245/504 (48%), Positives = 330/504 (65%), Gaps = 1/504 (0%)

Query: 3   ETYTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQML 62
           +++  +VEE     DGKPS GPVYR + +K G     + + + W  F  S ++ P+N+ML
Sbjct: 2   KSFAAQVEEGVKGKDGKPSVGPVYRNLLSKKGFPPIDSDITTAWDIFSKSVEKYPDNKML 61

Query: 63  GGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC 122
           G R++ DGKVGPY+W TY+EVY+  ++ GSA+R+ G  PG R GIYGSNCP+WI+AMEAC
Sbjct: 62  GWRRIVDGKVGPYMWKTYKEVYEEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAMEAC 121

Query: 123 NSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFAN 182
            + ++  VPLYDTLG  AV++I++HAE+   FVQ+ KI  +L    +    LK IVSF +
Sbjct: 122 AAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKIKELLEPDCKSAKRLKAIVSFTS 181

Query: 183 VSSSQKKEAEELGVSCFSWEEFLQLGTLD-CELPPKKKTNISTIMYTSGTTGEPKGVVLT 241
           V+  +  +A ++GV  +SW +FL +G  +  E  P K  +I TIMYTSGT+G+PKGVVLT
Sbjct: 182 VTEEESDKASQIGVKTYSWIDFLHMGKENPSETNPPKPLDICTIMYTSGTSGDPKGVVLT 241

Query: 242 NQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDV 301
           ++A+   V  VD          + +D Y SFLPLAHI D++IE +   KG S+G++ GD+
Sbjct: 242 HEAVATFVRGVDLFMEQFEDKMTHDDVYLSFLPLAHILDRMIEEYFFRKGASVGYYHGDL 301

Query: 302 RYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMP 361
             L +D+ ELKPT+ +GVPRV++RI+ GI   +       + +F   Y YKL  M +G  
Sbjct: 302 NALRDDLMELKPTLLAGVPRVFERIHEGIQKALQELNPRRRLIFNALYKYKLAWMNRGYS 361

Query: 362 QNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESC 421
             KA+P+ D L F K++   GGRL+ ++SG APL   +EEFLRVTS A + QGYGLTE+ 
Sbjct: 362 HKKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIEEFLRVTSCAFVVQGYGLTETL 421

Query: 422 SGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYK 481
                   D   M+GTVG P    E RLE VPEMGYD L   PRGEIC+RG  LFSGYYK
Sbjct: 422 GPTTLGFPDEMCMLGTVGAPAVYNELRLEEVPEMGYDPLGEPPRGEICVRGKCLFSGYYK 481

Query: 482 RPDLTEEVIVDGWFHTGDIGEWQP 505
            P+LTEEV+ DGWFHTGDIGE  P
Sbjct: 482 NPELTEEVMKDGWFHTGDIGEILP 505

Length = 660

>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

 Score =  557 bits (1439), Expect = 0.0
 Identities = 200/435 (45%), Positives = 264/435 (60%), Gaps = 46/435 (10%)

Query: 73  GPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPL 132
           GPY W++Y+EV + A+  GS +R+ G+ PGD+ GI+  N PEWII  +AC SQ++  VPL
Sbjct: 1   GPYEWISYKEVEERALNIGSGLRALGLKPGDKIGIFAENRPEWIITEQACFSQSLVIVPL 60

Query: 133 YDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAE 192
           YDTLG  A+E+I+N  E+SI F    K+                                
Sbjct: 61  YDTLGEEAIEYILNETEISIVFCDAVKV-------------------------------- 88

Query: 193 ELGVSCFSWEEFLQLGTLD-CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLS 251
                 +S+EE  +LG  +     P K  +++TIMYTSGTTG PKGV+LT+  IVA V  
Sbjct: 89  ------YSFEELEELGKKNKVPPTPPKPEDLATIMYTSGTTGNPKGVMLTHGNIVAGVAG 142

Query: 252 VDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQEL 311
           ++++     +     D Y S+LPLAHI+++++E  C++ G  IG++ GD R L  DI+EL
Sbjct: 143 INKIV---PEFIGPTDVYISYLPLAHIFERVVENVCLYIGGRIGYYSGDTRGLKGDIKEL 199

Query: 312 KPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDS 371
           KPT+F GVPRV DRIY GI  K+++ G L + LF FAYNYKL  +++G     A+PL D 
Sbjct: 200 KPTVFVGVPRVLDRIYKGILAKVNAKGGLKRTLFNFAYNYKLAALRRG--HGYASPLWDK 257

Query: 372 LVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADV 431
           LVF KI+ A GGR++ MLSG APL    +EFLRV  G P+ QGYGLTE+C+G   S    
Sbjct: 258 LVFKKIKAALGGRVRLMLSGGAPLSPDTQEFLRVALGCPVLQGYGLTETCAGGTLSDPGD 317

Query: 432 FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI- 490
               G VG P+   E +L  VPEMGY A    PRGEIC+RG  +F GYYK P+ T E   
Sbjct: 318 TT-TGHVGPPLPCCEIKLVDVPEMGYFAKDDPPRGEICIRGPNVFKGYYKNPEKTAEAFD 376

Query: 491 VDGWFHTGDIGEWQP 505
            DGWFHTGDIGEW P
Sbjct: 377 EDGWFHTGDIGEWLP 391

The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539

>gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase

 Score =  428 bits (1102), Expect = e-144
 Identities = 189/464 (40%), Positives = 260/464 (56%), Gaps = 21/464 (4%)

Query: 49  FCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIY 108
           F  + +   + + LG R   DG VG Y W+TY E   A    GS +   G+  G   G+Y
Sbjct: 50  FVYAVETFRDYKYLGTRIRVDGTVGEYKWMTYGEAGTARTAIGSGLVQHGIPKGACVGLY 109

Query: 109 GSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLP 168
             N PEW+I   AC++ +   VPLYDTLG +AV+FI+NHAEV+  F     + ++LSCL 
Sbjct: 110 FINRPEWLIVDHACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQTLNTLLSCLS 169

Query: 169 RC-CLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELP-PKKKTNISTIM 226
               + L  IV                GV   ++ + L  G    +   P K  +++TI 
Sbjct: 170 EIPSVRL--IVVVGGADEPLPSLPSGTGVEIVTYSKLLAQGRSSPQPFRPPKPEDVATIC 227

Query: 227 YTSGTTGEPKGVVLTNQAIVAEV--LSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIE 284
           YTSGTTG PKGVVLT+  ++A V   S+   F  +       D + S+LPLAHIY+++ +
Sbjct: 228 YTSGTTGTPKGVVLTHGNLIANVAGSSLSTKFYPS-------DVHISYLPLAHIYERVNQ 280

Query: 285 THCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKL 344
              +H G ++GF++GD   LM+D+  L+PT+F  VPR+Y+RIY GI+N +   G L ++L
Sbjct: 281 IVMLHYGVAVGFYQGDNLKLMDDLAALRPTIFCSVPRLYNRIYDGITNAVKESGGLKERL 340

Query: 345 FEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLR 404
           F  AYN K   ++ G      +P+ D LVF+KI+   GGR++ M SGA+PL   V EFLR
Sbjct: 341 FNAAYNAKKQALENGKN---PSPMWDRLVFNKIKAKLGGRVRFMSSGASPLSPDVMEFLR 397

Query: 405 VTSGAPLTQGYGLTESCSGCFTSLADVF-NMIGTVGVPMTTVEARLESVPEMGY-DALSS 462
           +  G  + +GYG+TE  + C  S  D   N+ G VG P    E +L  VPEM Y      
Sbjct: 398 ICFGGRVLEGYGMTE--TSCVISGMDEGDNLSGHVGSPNPACEVKLVDVPEMNYTSEDQP 455

Query: 463 VPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGDIGEWQP 505
            PRGEIC+RG  +F GYYK    T EVI  DGW HTGDIG W P
Sbjct: 456 YPRGEICVRGPIIFKGYYKDEVQTREVIDEDGWLHTGDIGLWLP 499

Length = 651

>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

 Score =  355 bits (913), Expect = e-116
 Identities = 147/445 (33%), Positives = 229/445 (51%), Gaps = 36/445 (8%)

Query: 73  GPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPL 132
           G +  +TY+E+Y+      S + S G+  GDR  I+ +N PEW IA  A  +     VP+
Sbjct: 41  GGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADLAILALGAVSVPI 100

Query: 133 YDTLGANAVEFIINHAEVSIAFVQENKIPS-ILSCLPRCCLYLKTIVSFANV------SS 185
           Y T     + +I+N +E  + FV+  ++   +L  L  C   +  IV    V       +
Sbjct: 101 YSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVIIDLVREAVEAKA 160

Query: 186 SQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAI 245
              +   + G+S F     +    L+  + P K  +++TI+YTSGTTG PKGV+LT++ +
Sbjct: 161 LVLEVFPDEGISLFL----IDSAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNL 216

Query: 246 VAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLM 305
           +A+V  +D++    G      D   SFLPLAHI+++  E      G     ++ D R L+
Sbjct: 217 LAQVAGIDEVLPPIG----PGDRVLSFLPLAHIFERAFEGGLALYGGVTVLFKEDPRTLL 272

Query: 306 EDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKA 365
           ED++E++PT+  GVPRV++++Y GI  K++   A+ +KLF +A       + + +     
Sbjct: 273 EDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYKKISRALLGGGP 332

Query: 366 APLL---DSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCS 422
              L   D LVF KIR+A GGR++  LSG APL   +  F R + G P+ +GYGLTE+ +
Sbjct: 333 LSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFR-SLGIPILEGYGLTETSA 391

Query: 423 G-CFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYK 481
                        +GTVG P+  +E ++                GEI +RG  +  GYYK
Sbjct: 392 VVSVNPPDRFV--LGTVGKPLPGIEVKI-------------ADDGEILVRGPNVMKGYYK 436

Query: 482 RPDLTEEVIV-DGWFHTGDIGEWQP 505
            P+ T E    DGWF TGD+GE   
Sbjct: 437 NPEATAEAFTEDGWFRTGDLGELDE 461

Length = 613

>gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein

 Score =  279 bits (715), Expect = 3e-86
 Identities = 177/515 (34%), Positives = 259/515 (50%), Gaps = 62/515 (12%)

Query: 39  PAGLESPW-------QFFCDSAKRIPNNQMLGGRKV--------SDGK------VGPYVW 77
           P  +E+PW         F  S K+  + ++LG RK+        SDG+      +G Y W
Sbjct: 47  PELVETPWEGATTLAALFEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEW 106

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           +TY +V++    F S + + G N  +R  I+     EW+IA++ C  Q IT V +Y +LG
Sbjct: 107 ITYGQVFERVCNFASGLVALGHNKEERVAIFADTRAEWLIALQGCFRQNITVVTIYASLG 166

Query: 138 ANAVEFIINHAEVSIAFV---QENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEEL 194
             A+   +N  EV+       Q  K+  I S L      +K ++   +            
Sbjct: 167 EEALCHSLNETEVTTVICDSKQLKKLIDISSQLET----VKRVIYMDDEGVDSDSSLSGS 222

Query: 195 G---VSCFSWEEFL-QLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVL 250
               VS FS  E L +   +D +LP     +I+ IMYTSG+TG PKGV++T+  IVA V 
Sbjct: 223 SNWTVSSFSEVEKLGKENPVDPDLP--SPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVA 280

Query: 251 SVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLME---- 306
            V  M VV      + D Y ++LPLAHI +   E+     G +IG+  G    L +    
Sbjct: 281 GV--MTVVPK--LGKNDVYLAYLPLAHILELAAESVMAAVGAAIGY--GSPLTLTDTSNK 334

Query: 307 -------DIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKG 359
                  D   LKPT+ + VP + DR+  G+  K+ + G L+KKLF+ AY  +L  ++  
Sbjct: 335 IKKGTKGDASALKPTLMTAVPAILDRVRDGVRKKVDAKGGLAKKLFDIAYKRRLAAIEGS 394

Query: 360 MPQNKAAPLL--DSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGL 417
                    L  D+LVF KIR   GGR++ MLSG APL    + F+ +  GAP+ QGYGL
Sbjct: 395 WFGAWGLEKLLWDALVFKKIRAVLGGRIRFMLSGGAPLSGDTQRFINICLGAPIGQGYGL 454

Query: 418 TESCSG-CFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSS-VPRGEICLRGNTL 475
           TE+C+G  F+   D    +G VG P+     +L S  E GY      +PRGEI + G ++
Sbjct: 455 TETCAGATFSEWDDT--SVGRVGPPLPCCYVKLVSWEEGGYLISDKPMPRGEIVIGGPSV 512

Query: 476 FSGYYKRPDLTEEVI-VDG----WFHTGDIGEWQP 505
             GY+K  + T+EV  VD     WF+TGDIG++ P
Sbjct: 513 TLGYFKNQEKTDEVYKVDERGMRWFYTGDIGQFHP 547

Length = 696

>gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional

 Score =  272 bits (697), Expect = 2e-83
 Identities = 143/447 (31%), Positives = 224/447 (50%), Gaps = 41/447 (9%)

Query: 76  VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDT 135
            ++TY E+++  + FG  +   G+  G    IY     EW+ ++    SQ++    +Y  
Sbjct: 120 RYITYAELWERIVNFGRGLAELGLTKGSNVAIYEETRWEWLASIYGIWSQSMVAATVYAN 179

Query: 136 LGANAVEFIINHAEVSIAFVQENKIPSILSCL-----PRCCLYLKTIVSFANVSSSQKKE 190
           LG +A+ + +   E          +P++L  +     P       TI+   ++ +S   E
Sbjct: 180 LGEDALAYALRETECKAIVCNGKNVPNLLRLMKSGGMPNT-----TIIYLDSLPASVDTE 234

Query: 191 AEELGVSCFSWEEFLQLGTLD-CELPPKKKTN---ISTIMYTSGTTGEPKGVVLTNQAIV 246
               G    +W + +  G       P     N   ++ IMYTSGTTG+PKGV+ T+ ++ 
Sbjct: 235 ----GCRLVAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTGDPKGVMHTHGSLT 290

Query: 247 AEVLSVDQMFV-VTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLM 305
           A +L+++     + G    E++TY S+LPLAHI +  +    + +G  IGF  G  R L 
Sbjct: 291 AGILALEDRLNDLIGPP-EEDETYCSYLPLAHIMEFGVTNIFLARGALIGF--GSPRTLT 347

Query: 306 E-------DIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKK 358
           +       D+ E +P    GVPR++D I   +  K+   G+L +++F+ AY  +L  +K+
Sbjct: 348 DTFARPHGDLTEFRPVFLIGVPRIFDTIKKAVEAKLPPVGSLKRRVFDHAYQSRLRALKE 407

Query: 359 GMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLT 418
           G    K  P  +  VFS  R   GGR++AMLSG  PL    +EF+ V  G  + QG+GLT
Sbjct: 408 G----KDTPYWNEKVFSAPRAVLGGRVRAMLSGGGPLSAATQEFVNVVFG-MVIQGWGLT 462

Query: 419 ESCSGCFTSLADVFNM-IGTVGVPMTTVEARLESVPEMGY-DALSSVPRGEICLRGNTLF 476
           E+   C   +    ++    VG  +  VE +L    E  + D     PRGEI LRG  LF
Sbjct: 463 ETV--CCGGIQRTGDLEPNAVGQLLKGVEMKLLDTEEYKHTDT--PEPRGEILLRGPFLF 518

Query: 477 SGYYKRPDLTEEVIV-DGWFHTGDIGE 502
            GYYK+ +LT EV+  DGWFHTGD+G 
Sbjct: 519 KGYYKQEELTREVLDEDGWFHTGDVGS 545

Length = 700

>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme

 Score =  252 bits (646), Expect = 5e-79
 Identities = 115/438 (26%), Positives = 181/438 (41%), Gaps = 78/438 (17%)

Query: 79  TYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGA 138
           TY+E+ + A R  +A+R+ GV PGDR  I   N PEW++A+ A       YVPL  +L A
Sbjct: 1   TYRELDERANRLAAALRALGVGPGDRVAILLPNSPEWVVAILAVLKAGAAYVPLDPSLPA 60

Query: 139 NAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSC 198
             + +I+  +E  +    +  +P +L  L +  + L  I+   +       + E L    
Sbjct: 61  ERLAYILEDSEAKVLITDDELLPKLLEVLLKLLVLLALIIVGDDGEGLDLLDDELLA--- 117

Query: 199 FSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVV 258
                     + +   PP    +++ I+YTSGTTG+PKGV+LT++ ++A    + + F +
Sbjct: 118 --------GASAEPPAPPVDPDDLAYIIYTSGTTGKPKGVMLTHRNLLALAAGLAERFGL 169

Query: 259 TGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGF---WRGDVRYLMEDIQELKPTM 315
           T       D     LPL            +  G ++     +  D   L++ I++ K T+
Sbjct: 170 T-----PGDRVLLLLPLHFDGSVWEIFGPLLAGGTLVLVPKFTLDPARLLDLIEKYKVTV 224

Query: 316 FSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFS 375
             GVP +   +                                       AP       S
Sbjct: 225 LYGVPTLLRLLL-------------------------------------KAPEEKKYDLS 247

Query: 376 KIREAFGGRLQAMLSGAAPLPIHV-EEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNM 434
            +R         +LSG  PLP  +         G PL  GYG TE+      +L     +
Sbjct: 248 SLRL--------VLSGGEPLPPELLRRLRERFGGVPLVNGYGPTETTVVATANLPGDPEV 299

Query: 435 -IGTVGVPMTTVEARLESVPEMGYDALSSVP---RGEICLRGNTLFSGYYKRPDLTEEVI 490
             G++G P+  VE ++  + E G      VP    GE+C+RG  +  GY   P+LT E  
Sbjct: 300 KPGSIGRPLPGVEVKV--LDEEG----EPVPPGEVGELCIRGPGVARGYLNDPELTAERF 353

Query: 491 V-DGWF--HTGDIGEWQP 505
           V DGW    TGD+G W  
Sbjct: 354 VEDGWGMYRTGDLGRWDE 371

Length = 412

>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases

 Score =  249 bits (638), Expect = 2e-77
 Identities = 100/284 (35%), Positives = 149/284 (52%), Gaps = 54/284 (19%)

Query: 222 ISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ 281
           ++T++YTSGTTG PKGV+LT++ ++A+  ++ ++  ++       D   SFLPLAH+++Q
Sbjct: 90  LATLIYTSGTTGNPKGVMLTHRNLLAQAAALLEVIPLS-----PGDRVLSFLPLAHVFEQ 144

Query: 282 IIETH-CIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGAL 340
            +  +  +  G  + F       L+ED++E++PT+F  VPRV+++IY GI  K+++ G L
Sbjct: 145 RLGEYLPLSSGARVNF-AESPETLLEDLREVRPTVFFAVPRVWEKIYAGIEAKVAAAGPL 203

Query: 341 SKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVE 400
            +KLF +A                                 GGRL+  +SG APLP  V 
Sbjct: 204 KRKLFRWA-------------------------------LGGGRLRFAVSGGAPLPPEVL 232

Query: 401 EFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDAL 460
           EF R   G P+ +GYGLTE+      +       IGTVG P+  VE R+           
Sbjct: 233 EFFR-ALGIPILEGYGLTETSGVATVNRPGDIR-IGTVGKPLPGVEVRI----------- 279

Query: 461 SSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGDIGEW 503
                GEI +RG  +  GYYK P+ T E +  DGW HTGDIG  
Sbjct: 280 --AEDGEILVRGPNVMKGYYKNPEATAEALDEDGWLHTGDIGRL 321

This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456

>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase

 Score =  249 bits (637), Expect = 1e-76
 Identities = 136/447 (30%), Positives = 196/447 (43%), Gaps = 78/447 (17%)

Query: 69  DGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAIT 128
            G+   Y   T+ +V D A R  +A++S G+ PGDR  I   NC EWIIA  A       
Sbjct: 1   GGQWHEY---TWAQVADQARRIAAALQSLGLEPGDRIAILSKNCAEWIIADLAIWMAGHV 57

Query: 129 YVPLYDTLGANAVEFIINHAEVSIAFV-----QENKIPSILSCLPRCCL-YLKTIVSFAN 182
            VPLY TL A  + +++ H++    FV      +     +   LP   L    T+     
Sbjct: 58  SVPLYPTLTAETIRYVLEHSDAKALFVGKLDDWDAMKAGVPEGLPTIILFPYSTLKDH-- 115

Query: 183 VSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTN 242
                           + W++ L         P  +  +++TI+YTSGTTG+PKGV+L+ 
Sbjct: 116 ----------------YKWDDLLAATEPLQGRPLPEPEDLATIVYTSGTTGQPKGVMLSF 159

Query: 243 QAI--VAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD-QIIETHCIHKGCSIGFWRG 299
            A    A+               +  D   S+LPLAHI +  I+E   ++ G  + F   
Sbjct: 160 GAFAFAAQGTIEIIGL-------TPNDRLLSYLPLAHIAERVIVEGGSLYSGAEVFFVES 212

Query: 300 DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKG 359
            +     D+Q  +PT+F  VPR++ +   GI  K+       +KL     N  L      
Sbjct: 213 -LDTFAADLQRARPTVFFSVPRLWTKFQQGILAKLP-----PEKL-----NLLLKI---- 257

Query: 360 MPQNKAAPLLDSLVFSKIREAFG-GRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLT 418
                  P+L SLV  KI +  G  + +   SGAAP+P  +  + R   G P+ +GYG+T
Sbjct: 258 -------PILSSLVKKKILKGLGLDQARLAGSGAAPMPPALIAWYR-KLGLPICEGYGMT 309

Query: 419 ESC-SGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFS 477
           E+          D    IGTVG P+  VE ++                GEI +R   L S
Sbjct: 310 ENFAYSTLNYPGD--RRIGTVGKPIPGVELKIS-------------EDGEILIRSPGLMS 354

Query: 478 GYYKRPDLTEEVIV-DGWFHTGDIGEW 503
           GYYK P+ T E    DGW HTGD GE 
Sbjct: 355 GYYKDPEKTAEAFTEDGWLHTGDKGEI 381

The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504

>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS)

 Score =  213 bits (543), Expect = 5e-62
 Identities = 134/457 (29%), Positives = 213/457 (46%), Gaps = 65/457 (14%)

Query: 75  YVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIA-MEACNSQAITYVPLY 133
           +  LTY++ Y+A  +   A    G+      GI G N PEW IA + A  +  I  V +Y
Sbjct: 6   WHTLTYKQYYEACRQAAKAFLKLGLERFHSVGILGFNSPEWFIAAVGAIFAGGIA-VGIY 64

Query: 134 DTLGANAVEFIINHAEVSIAFV----QENKIPSILSCLPRCCLYLKTIVSFANVSSSQKK 189
            T    A +++   +E +I  V    Q  KI +I   LP     LK I+ +       ++
Sbjct: 65  TTNSPEACQYVAETSEANILVVDNAKQLQKILAIQDQLPH----LKAIIQY-------RE 113

Query: 190 EAEELGVSCFSWEEFLQLG------TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQ 243
             +E   + +SW+EF++LG       LD  +  +K     T++YTSGTTG PKGV+L++ 
Sbjct: 114 PLKEKEPNLYSWKEFMELGRSIPDEQLDAIIESQKPNQCCTLIYTSGTTGMPKGVMLSHD 173

Query: 244 AIV--AEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETH-CIHKGCSIGFWRGD 300
            I   A+           G+     ++  S+LPL+HI  QI++    I  G  + F + D
Sbjct: 174 NITWTAKAAVKHMDLRTVGQ-----ESVVSYLPLSHIAAQILDIWLPISVGGCVYFAQPD 228

Query: 301 VR--YLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKK 358
                L++ ++E++PT F GVPRV+++I   +    +    L +K+  +A          
Sbjct: 229 ALKGTLVKTLREVRPTAFMGVPRVWEKIQERMKAVGAKSTGLKRKIASWA-------KGV 281

Query: 359 GMPQNKAAP-----------LLDSLVFSKIREAFG-GRLQAMLSGAAPLPIHVEEFLRVT 406
           G+  N               L   LVF K+R+A G  R Q   +GAAP+     EF  ++
Sbjct: 282 GLETNLKLMGGESPPPMCFRLAKKLVFKKVRKALGLDRCQKFFTGAAPISRETLEFF-LS 340

Query: 407 SGAPLTQGYGLTESCSGCFT-SLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPR 465
              P+ + YG++E  SG  T S    +  + + G  +   E ++ +    G         
Sbjct: 341 LNIPIMELYGMSE-TSGPHTVSNPQNYR-LLSCGKALPGCETKIHNPDADGI-------- 390

Query: 466 GEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGDIG 501
           GEIC+ G  +F GY    + TEE I  DGW H+GD+G
Sbjct: 391 GEICIWGRHVFMGYLNMEEKTEEAIDEDGWLHSGDLG 427

This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594

>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  210 bits (536), Expect = 1e-61
 Identities = 114/445 (25%), Positives = 170/445 (38%), Gaps = 87/445 (19%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           LTY+E+   A R  +A+++ GV PGDR  I   N PE++IA  A        VPL   L 
Sbjct: 39  LTYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAFLAALRAGAVAVPLNPRLT 98

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
              + +I+N A   +          + +      + L  ++                   
Sbjct: 99  PRELAYILNDAGAKVLITSAEFAALLEAVAEALPVVLVVLLVGDADDRLPI--------- 149

Query: 198 CFSWEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMF 256
             + E     G   D +  P    +++ ++YTSGTTG PKGVVLT++ ++A    +    
Sbjct: 150 --TLEALAAEGPGPDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAAL 207

Query: 257 VVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLM----------- 305
              G   + +D   S+LPL HI+  I+       G       G    L+           
Sbjct: 208 ---GGGLTPDDVVLSWLPLFHIFGLIV-------GLLAPLLGGGTLVLLSPEPFDPEEVL 257

Query: 306 EDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKA 365
             I++ K T+ SGVP                                             
Sbjct: 258 WLIEKYKVTVLSGVPTFLRE---------------------------------------- 277

Query: 366 APLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHV-EEFLRVTSGAPLTQGYGLTESCSG- 423
             LLD+    K  +     L+ +LSG APLP  + E F        + +GYGLTE+    
Sbjct: 278 --LLDNP--EKDDDDLSSSLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVV 333

Query: 424 CFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPR--GEICLRGNTLFSGYYK 481
                 D+    G+VG P+  VE R+        D    +P   GEI +RG  +  GY+ 
Sbjct: 334 TINPPDDLLAKPGSVGRPLPGVEVRIVDP-----DGGEVLPGEVGEIWVRGPNVMKGYWN 388

Query: 482 RPDLTEEVIV-DGWFHTGDIGEWQP 505
           RP+ T E    DGW  TGD+G    
Sbjct: 389 RPEATAEAFDEDGWLRTGDLGYVDE 413

Length = 534

>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD

 Score =  197 bits (503), Expect = 2e-57
 Identities = 114/467 (24%), Positives = 177/467 (37%), Gaps = 124/467 (26%)

Query: 47  QFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCG 106
                +A+R P+   L       G+      LTY E+ + + RF + ++  GV  GDR  
Sbjct: 3   DLLERAARRFPDRPAL----TFFGRK-----LTYAELDELSDRFAAYLQQLGVKKGDRVA 53

Query: 107 IYGSNCPEWIIAMEACNSQAITYV-----PLYDTLGANAVEFIINHAEVSIAFVQENKIP 161
           +   NCP++ IA           V     PLY       +E  +N +   +  V      
Sbjct: 54  LMLPNCPQFPIAYFGI--LKAGAVVVPVNPLYT---PRELEHQLNDSGAKVLIV------ 102

Query: 162 SILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTN 221
                                                 S+E+ L  G            +
Sbjct: 103 ------------------------------------AISFEDALASGAPLPLPVELSPDD 126

Query: 222 ISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ 281
           ++ + YT GTTG PKG +LT++ +VA   +V Q+      +   ED + + LPL HI+  
Sbjct: 127 LAVLQYTGGTTGVPKGAMLTHRNLVA---NVQQIAAWVKDLREGEDRFLTALPLFHIFGL 183

Query: 282 IIET-HCIHKGCSIGFW-RGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGA 339
            +     +  G +           ++++I+  + T+F GVP     +Y  + N       
Sbjct: 184 TVNMLLGLRLGATNVLVPNFRPINVLKEIKRYRFTIFPGVPT----LYNALLN------- 232

Query: 340 LSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHV 399
                                      P      FS +R          +SG APLP+ V
Sbjct: 233 --------------------------HPEFKKYDFSSLRLC--------ISGGAPLPVEV 258

Query: 400 -EEFLRVTSGAPLTQGYGLTE-SCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGY 457
            E F   T GAPL +GYGLTE S       L       G++G+P+   E ++        
Sbjct: 259 AERFEEKT-GAPLVEGYGLTETSPVTTVNPLDGE-RKPGSIGLPLPGTEVKIVD------ 310

Query: 458 DALSSVPR---GEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIG 501
           D  + +P    GE+ +RG  +  GY+ RP+ T EV+ DGW  TGDIG
Sbjct: 311 DEGNELPPGEVGELVVRGPQVMKGYWNRPEETAEVLTDGWLRTGDIG 357

This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468

>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL)

 Score =  182 bits (465), Expect = 1e-51
 Identities = 102/428 (23%), Positives = 166/428 (38%), Gaps = 62/428 (14%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           LT+ ++   A+R    +R  G+  GD   +   N  E+      C +          +  
Sbjct: 11  LTFADLLKKALRLAKGLRKLGLKQGDVVALISPNSIEFPPVFLGCLAAGGIVSAANPSYT 70

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
            + +   +  ++  + F   +++  +     +    +  I+       S       +   
Sbjct: 71  PDELAHQLKISKPKLIFCDPDELDKVKEAA-KELGPVVRIIVL----DSAPDGVLRIED- 124

Query: 198 CFSWEEFLQLGTLDCELPPK-KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMF 256
               E  L         P    K + + ++Y+SGTTG PKGV+L+++ I+A +  V    
Sbjct: 125 --LLEPRLGAEDEFRPTPLIDGKDDTAALLYSSGTTGLPKGVMLSHKNIIANLSQVQDTL 182

Query: 257 VVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGC-SIGFWRGDVRYLMEDIQELKPTM 315
              G   S  D   +FLP  H Y        +  G   I   + D    ++ I++ K T 
Sbjct: 183 --KGNPDSSNDVVLTFLPFYHAYGLTTTLASLLCGATVIIMPKFDSETFLKLIEKYKVTS 240

Query: 316 FSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFS 375
              VP +                AL+K                       +PL+D    S
Sbjct: 241 LFLVPPIAV--------------ALAK-----------------------SPLVDKYDLS 263

Query: 376 KIREAFGGRLQAMLSGAAPLPIHVEEFLRV-TSGAPLTQGYGLTESCSGCFTSLADVFNM 434
            +R  F        SGAAPL   ++E LR       + QGYG+TE+      +       
Sbjct: 264 SLRVIF--------SGAAPLSKELQEELRKRFPNTTIKQGYGMTETGPATTLTPPG-DEK 314

Query: 435 IGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV-DG 493
            G+VG  +  VEA++  V E G  +L    RGE+C++G  +  GY   P+ T+E I  DG
Sbjct: 315 PGSVGRLVPNVEAKI--VDEDGGKSLGPNERGELCVKGPQIMKGYLNNPEATKETIDEDG 372

Query: 494 WFHTGDIG 501
           W HTGDIG
Sbjct: 373 WLHTGDIG 380

This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487

>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated

 Score =  179 bits (456), Expect = 3e-50
 Identities = 110/441 (24%), Positives = 175/441 (39%), Gaps = 88/441 (19%)

Query: 79  TYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGA 138
           TY E+ +   R  +A+R+ GV  GDR  ++  N  E++ A  A         P+   L  
Sbjct: 33  TYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYFAVPKIGAVLHPINIRLKP 92

Query: 139 NAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSC 198
             + +I+N AE  +  V    +P + + LP+        V    V       A  L    
Sbjct: 93  EEIAYILNDAEDRVVLVDSEFVPLLAAILPQL-----PTVRTVIVEGD--GPAAPLAPEV 145

Query: 199 FSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVV 258
             +EE L   +   + P   + + + ++YTSGTTG PKGVVL+++ +    L+V     +
Sbjct: 146 GEYEELLAAASDTFDFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWLKL 205

Query: 259 TGKVCSEEDTYFSFLPLAHIYDQIIETHC----IHKGCSI---GFWRGDVRYLMEDIQEL 311
           +      +D Y   +P+ H++            +  G         R D   L++ I+  
Sbjct: 206 S-----RDDVYLVIVPMFHVH----AWGLPYLALMAGAKQVIPR--RFDPENLLDLIETE 254

Query: 312 KPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDS 371
           + T F  VP ++                                M   + +   A  +D 
Sbjct: 255 RVTFFFAVPTIW-------------------------------QM---LLKAPRAYFVD- 279

Query: 372 LVFSKIREAFGGRLQAMLSGAAPLPIH-VEEFLRVTSGAPLTQGYGLTESCS-GCFTSLA 429
             FS +R         ++ G A LP   + EF     G  L QGYG+TE+          
Sbjct: 280 --FSSLRL--------VIYGGAALPPALLREFKEKF-GIDLVQGYGMTETSPVVSVLPPE 328

Query: 430 D----VFNMIGTVGVPMTTVEARL-----ESVPEMGYDALSSVPRGEICLRGNTLFSGYY 480
           D     +    + G P+  VEAR+     + +P  G +       GEI +RG  L  GY+
Sbjct: 329 DQLPGQWTKRRSAGRPLPGVEARIVDDDGDELPPDGGEV------GEIIVRGPWLMQGYW 382

Query: 481 KRPDLTEEVIVDGWFHTGDIG 501
            RP+ T E I  GW HTGD+G
Sbjct: 383 NRPEATAETIDGGWLHTGDVG 403

Length = 521

>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated

 Score =  177 bits (450), Expect = 2e-49
 Identities = 109/450 (24%), Positives = 169/450 (37%), Gaps = 104/450 (23%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           LTY E+     R  +A+ + G+  GDR  I+  N P W+IA           VPL     
Sbjct: 31  LTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAALGALKAGAVVVPLNTRYT 90

Query: 138 ANAVEFIINHAEVSIAFVQENKIP---SILSCLPRCCLYLKTIVSFANVSSSQKKEAEEL 194
           A+   +I+   +    FV    +    S  + LP     L+ +V        + +E +  
Sbjct: 91  ADEAAYILARGDAKALFVLGLFLGVDYSATTRLPA----LEHVVIC------ETEEDDPH 140

Query: 195 GVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLT------NQAIVAE 248
                ++ +FL  G      P     +++ I++TSGTTG PKG +LT      N A  AE
Sbjct: 141 TEKMKTFTDFLAAGDPAERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAE 200

Query: 249 VLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG--------- 299
            L +            E D Y +  P  H++           G +    RG         
Sbjct: 201 YLGLT-----------EGDRYLAANPFFHVF-------GYKAGVNAPLMRGATILPLPVF 242

Query: 300 DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKG 359
           D   +   I+  + T+  G P +Y+ +                                 
Sbjct: 243 DPDEVFRLIETERITVLPGPPTMYNSLL-------------------------------- 270

Query: 360 MPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLP---IH-VEEFLRVTSGAPLTQGY 415
                  P   +   S +R A        ++GAA +P   +   E  L V     +  GY
Sbjct: 271 -----QHPDRSAEDLSSLRLA--------VTGAASMPVALLERFESELGVDI---VLTGY 314

Query: 416 GLTESCS-GCFTSLADVFNMI-GTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGN 473
           GL+E+     F  L D    + GT+G  +  VE ++  V E+G +       GE+ +RG 
Sbjct: 315 GLSEASGVTTFNRLDDDRKTVAGTIGTAIAGVENKI--VNELGEEVPVGEV-GELLVRGP 371

Query: 474 TLFSGYYKRPDLTEEVI-VDGWFHTGDIGE 502
            +  GYY  P+ T   I  DGW HTGD+G 
Sbjct: 372 NVMKGYYDDPEATAAAIDADGWLHTGDLGR 401

Length = 513

>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional

 Score =  167 bits (425), Expect = 9e-45
 Identities = 92/318 (28%), Positives = 170/318 (53%), Gaps = 17/318 (5%)

Query: 188 KKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVA 247
           K++A++LG+S   +++  +  T + ++  +    I++I+YTSGT+G+PKGV+L+N+ +  
Sbjct: 272 KEKAKKLGISIILFDDMTKNKTTNYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYN 331

Query: 248 EVLSV-DQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLME 306
            V+ +                T+ S+LP++HIY+++I       G +I  W  D+ Y  +
Sbjct: 332 TVVPLCKHSIFKKYNP----KTHLSYLPISHIYERVIAYLSFMLGGTINIWSKDINYFSK 387

Query: 307 DIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAA 366
           DI   K  + +GVP+V++RIYT I  +I++   L + L +   + +  N   G  +    
Sbjct: 388 DIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLVKKILSLRKSNNNGGFSK---- 443

Query: 367 PLLDSL--VFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGC 424
             L+ +  + SKI++     L+ +L+G   L   + E L V       QGYGLTE+    
Sbjct: 444 -FLEGITHISSKIKDKVNPNLEVILNGGGKLSPKIAEELSVLLNVNYYQGYGLTETTGPI 502

Query: 425 FTSLADVFNMIGTVGVPMT-TVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRP 483
           F   AD  N   ++G P++   + ++ +     Y A  ++P+GE+ ++ +++FSGY+   
Sbjct: 503 FVQHADDNNT-ESIGGPISPNTKYKVRTWET--YKATDTLPKGELLIKSDSIFSGYFLEK 559

Query: 484 DLTEEVIV-DGWFHTGDI 500
           + T+     DG+F TGDI
Sbjct: 560 EQTKNAFTEDGYFKTGDI 577

Length = 746

>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  140 bits (356), Expect = 2e-37
 Identities = 75/289 (25%), Positives = 112/289 (38%), Gaps = 69/289 (23%)

Query: 224 TIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD-QI 282
            I YTSGTTG PKG +LT++ ++    S+ +   +T     E D     +PL H++   +
Sbjct: 6   LIQYTSGTTGRPKGAMLTHRNVLNNGYSIARRLGLT-----EGDRTLVPVPLFHVFGLVL 60

Query: 283 IETHCIHKGCSI---GFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGA 339
                +  G ++     +  D    +  I+  + T   GVP ++  +             
Sbjct: 61  GVLASLTAGATLVLMEKF--DPGAALRLIERERITALHGVPTMFIALLE----------- 107

Query: 340 LSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPI-H 398
                                      P  D    S +R          +SG AP+P   
Sbjct: 108 --------------------------HPDFDKFDLSSLR--------TGISGGAPVPPEL 133

Query: 399 VEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNM--IGTVGVPMTTVEARLESVPEMG 456
           V         A +T GYG+TE+      +  D       GTVG P+  VE ++       
Sbjct: 134 VRRIREEFPMAEITTGYGMTETSGVGTQTSGDDPYEDRPGTVGRPLPGVEVKIVD----- 188

Query: 457 YDALSSVP---RGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGDIG 501
                 VP    GEIC+RG ++  GYY  P+ T E I  DGW HTGD+G
Sbjct: 189 -PDGGEVPPGEVGEICVRGYSVMKGYYNDPEATAEAIDADGWLHTGDLG 236

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347

>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins

 Score =  139 bits (352), Expect = 5e-37
 Identities = 78/282 (27%), Positives = 124/282 (43%), Gaps = 61/282 (21%)

Query: 225 IMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIE 284
           I+YTSGTTG PKGV+LT++ ++A  ++        G   S  D Y    PL H    +  
Sbjct: 6   ILYTSGTTGRPKGVMLTHRNLLANAVNALA-----GVDLSPGDVYLLAAPLYHAAGGLFL 60

Query: 285 THCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKK 343
              +  G ++      D   +++ I+  + T    VP ++ R+                +
Sbjct: 61  LPALAAGGTVVLMPKFDPEAVLDLIERHRVTHTFLVPTMFQRLL---------------R 105

Query: 344 LFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFL 403
           L +FA  Y L +++                              ++ GAAP+P  ++  +
Sbjct: 106 LPDFA-RYDLSSLRL-----------------------------IIYGAAPMPAELKRAM 135

Query: 404 RVTSGAPLTQGYGLTESCSGCF-TSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSS 462
               G    QGYG+TE+       S  D    +G+VG P+  VE R+  V E G +    
Sbjct: 136 IEWFGPVFVQGYGMTETGPTTTLLSPEDWLRKLGSVGRPVPGVEVRI--VDEDGRE---- 189

Query: 463 VPR---GEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIG 501
           +P    GEI +RG  + +GY+ RP+ T E + DGW HTGD+G
Sbjct: 190 LPPGEVGEIVVRGPAVMAGYWNRPEATAEALRDGWLHTGDLG 231

Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342

>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated

 Score =  137 bits (346), Expect = 9e-35
 Identities = 130/474 (27%), Positives = 195/474 (41%), Gaps = 121/474 (25%)

Query: 79  TYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYV---PLYDT 135
           TY E+     R  + +R+ GV PGDR  I   NCP+ I+A  A        V   PLY T
Sbjct: 59  TYAELGKQVRRAAAGLRALGVRPGDRVAIVLPNCPQHIVAFYAVLRLGAVVVEHNPLY-T 117

Query: 136 LGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQ-------- 187
                  F  + A V+I +   +K+   +  L R    L+TIVS  N+ ++         
Sbjct: 118 AHELEHPFEDHGARVAIVW---DKVAPTVERLRRT-TPLETIVS-VNMIAAMPLLQRLAL 172

Query: 188 -------KKEAEELGVSC---FSWEEFLQ---LGTLDCELPPK-KKTNISTIMYTSGTTG 233
                  +K    L         WE  +     G       P+    +++ I+YTSGTTG
Sbjct: 173 RLPIPALRKARAALTGPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTG 232

Query: 234 EPKGVVLTNQAIVAEVLSVDQMFVVTGK-----VCSEEDTYFSFLPLAHIYDQIIETHCI 288
           +PKG  LT++ + A            GK     +    +   + LP+ H Y     T C+
Sbjct: 233 KPKGAQLTHRNLFANAAQ--------GKAWVPGLGDGPERVLAALPMFHAYGL---TLCL 281

Query: 289 HKGCSIG-----FWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKK 343
               SIG         D+  +++ +++  PT   GVP +Y++I              +++
Sbjct: 282 TLAVSIGGELVLLPAPDIDLILDAMKKHPPTWLPGVPPLYEKIA-----------EAAEE 330

Query: 344 LFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIH-VEEF 402
                         +G+              S +R AF        SGA  LP+  VE +
Sbjct: 331 --------------RGVD------------LSGVRNAF--------SGAMALPVSTVELW 356

Query: 403 LRVTSGAPLTQGYGLTESCSGCFTSLADVFNMI------GTVGVPMTTVEARLESVPEMG 456
            ++T G  L +GYGLTE      TS   V N +      G VGVP    E R+   PE  
Sbjct: 357 EKLTGGL-LVEGYGLTE------TSPIIVGNPMSDDRRPGYVGVPFPDTEVRIVD-PE-- 406

Query: 457 YDALSSVP---RGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQPME 507
            D   ++P    GE+ +RG  +F GY+ RP+ T +  +DGWF TGD+     ME
Sbjct: 407 -DPDETMPDGEEGELLVRGPQVFKGYWNRPEETAKSFLDGWFRTGDVVV---ME 456

Length = 573

>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I

 Score =  132 bits (334), Expect = 1e-34
 Identities = 78/293 (26%), Positives = 121/293 (41%), Gaps = 69/293 (23%)

Query: 221 NISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAH--- 277
           + + I+YTSGTTG+PKGVVL+++ ++A   ++ Q   +T     E D   S LPL H   
Sbjct: 1   DPAFILYTSGTTGKPKGVVLSHRNLLANAQALAQAIGLT-----EGDVLLSVLPLFHVVG 55

Query: 278 ----IYDQIIE--THCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGIS 331
               +   ++   T  +++G             +E I++ + T+  GVP +YD       
Sbjct: 56  GGSGLLGALLAGGTVVLYEG------FPFPLSFLELIEQYRVTVLFGVPTLYDA------ 103

Query: 332 NKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSG 391
                                               L  +        +    L+ ++SG
Sbjct: 104 ------------------------------------LAKAAEDRGYDLS---SLRLLISG 124

Query: 392 AAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLES 451
             PL   + E      GAP+ +GYGLTE+     T+        GTVG P+  VE R+  
Sbjct: 125 GEPLSPELLERFEERPGAPILEGYGLTETSVVTSTNPDSELKKPGTVGRPVPGVEVRV-- 182

Query: 452 VPEMGYDALSSVPRGEICLRGNTLFSGYYKR-PDLTEEVIVDGWFHTGDIGEW 503
           V E G   L     GE+ +RG  +  GY+   P+ T     DGW+ TGD+G  
Sbjct: 183 VDEEG-KPLPPGEVGELVVRGPWVMKGYWNNPPETTAAATEDGWYRTGDLGYL 234

This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338

>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)

 Score =  135 bits (341), Expect = 2e-34
 Identities = 104/432 (24%), Positives = 162/432 (37%), Gaps = 78/432 (18%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           LTY E+     R  + + +RG   GD   +   N  E+ +   A  S             
Sbjct: 33  LTYAELERLVRRLAAGLAARGGRKGDVVLLLSPNSLEFPVVFLAVLSAGAVVTTANPLYT 92

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
              +   +  +   +A         +   L    L L+ +V                  S
Sbjct: 93  PAEIAKQVKDSGAKLAITT----SELAEKLAS--LALEPVVLLD----------SADDGS 136

Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV 257
               +  L     +  +   K+ +++ + Y+SGTTG  KGV+LT++ ++A   +V Q+  
Sbjct: 137 AAIDDL-LFADEPEPPVVVIKQDDVAALPYSSGTTGRSKGVMLTHRNLIA---NVAQLVA 192

Query: 258 VTGKVCSEEDTYFSFLPLAHIYD-QIIETHCIHKGCSI----GFWRGDVRYLMEDIQELK 312
             G     ED     LP+ HIY   +I    +  G ++     F   D+   +  I++ K
Sbjct: 193 GEGPNFDREDVTLCVLPMFHIYGLTVILLALLRLGATVVVMPRF---DLEKFLAAIEKYK 249

Query: 313 PTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSL 372
            T    VP +                AL K                        P++D  
Sbjct: 250 VTHLPVVPPIV--------------LALVKH-----------------------PIVDKY 272

Query: 373 VFSKIREAFGGRLQAMLSGAAPLPIHVEE-FLRVTSGAPLTQGYGLTESCSGCFTSLADV 431
             S         L+ + SGAAPL   + E F     G  L QGYG+TES           
Sbjct: 273 DLSS--------LKQIGSGAAPLGKELAEAFRARFPGVELGQGYGMTESSPVTTMCPVPE 324

Query: 432 FNM-IGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI 490
            +   G+VG  +  VEA++   PE G ++L     GE+ +RG  +  GY   P+ T E I
Sbjct: 325 KDPKPGSVGRLVPNVEAKIVD-PETG-ESLPPNQPGELWVRGPQVMKGYLNNPEATAETI 382

Query: 491 V-DGWFHTGDIG 501
             DGW HTGD+G
Sbjct: 383 DKDGWLHTGDLG 394

4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504

>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis

 Score =  133 bits (337), Expect = 8e-34
 Identities = 122/461 (26%), Positives = 173/461 (37%), Gaps = 112/461 (24%)

Query: 79  TYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA----CNSQAITYVPLYD 134
           TY+E YD   R  SA+   G+  GD   +   N P     +EA      + A+  VPL  
Sbjct: 31  TYRETYDRCRRLASALSKLGIGKGDVVAVLAPNTPA---MLEAHFGVPMAGAV-LVPLNT 86

Query: 135 TLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEEL 194
            L A+ + FI+NH+E  + FV +  +      L    L  K I+    +  S   E  E 
Sbjct: 87  RLDADDIAFILNHSEAKVLFVDQEFLSLAEEALAL--LSTKEIIDTEIIVISPAAEDSEE 144

Query: 195 GVSCFSWEEFLQLGTLD-CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVD 253
           G     +E+ L  G  D   +PP  + +  ++ YTSGTTG PKGVV T++      L   
Sbjct: 145 G----DYEDLLAGGDPDPLPIPPDDEWDPISLNYTSGTTGNPKGVVYTHRGAYLNALGNV 200

Query: 254 QMFVVTGKVCSEEDTYFSFLPLAHI--------YDQIIETH-CIHKGCSIGFWRGDVRY- 303
             + +          Y   LP+ H            +  TH C+ K          V   
Sbjct: 201 IEWGMPD-----RPVYLWTLPMFHCNGWCFPWAITAVGGTHVCLRK----------VDAP 245

Query: 304 -LMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQ 362
            + + I++ K T   G P V                                NM    P+
Sbjct: 246 AIYDLIEKHKVTHLCGAPTVL-------------------------------NMLANAPE 274

Query: 363 NKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESC 421
               P                 ++ M +GA P P  V    ++   G  +T  YGLTE  
Sbjct: 275 ADKLP-------------LPRPVRVMTAGAPP-PPAV--IKKMEELGFEVTHVYGLTE-T 317

Query: 422 SGCFT-----------SLADVFNMIGTVGVPMTTVEARLESV-PEMGYDALSSVPR---- 465
            G  T              +   +    GV    +E  ++ V PE   D    VPR    
Sbjct: 318 YGPITVCEWKPEWDALPAEERARLKARQGVRYVGLEE-VDVVDPETMKD----VPRDGKT 372

Query: 466 -GEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQP 505
            GEI +RGNT+  GYYK P+ TEE    GWFH+GD+    P
Sbjct: 373 IGEIVMRGNTVMKGYYKNPEATEEAFAGGWFHSGDLAVVHP 413

This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520

>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE)

 Score =  131 bits (332), Expect = 1e-33
 Identities = 100/441 (22%), Positives = 149/441 (33%), Gaps = 157/441 (35%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           LT+QE+     +    + + GV  GDR  +   N  E+++   A              L 
Sbjct: 2   LTFQELDQRVSQLAEQLAALGVRRGDRVALLAKNSIEFLLLFLAL-------------LR 48

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
             AV   +N                    LP+                      EE    
Sbjct: 49  LGAVVLPLNPR------------------LPQ----------------------EE---- 64

Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV 257
               ++ L     D +         +TI++TSG+TG+PK VV T    +A      +   
Sbjct: 65  ---LQQQLADLQPDLD-------RPATIIFTSGSTGKPKAVVHTWGNHLASARGSAENLG 114

Query: 258 VTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG-------------DVRYL 304
           +T      +D +   LPL H+            G +I   R              D   +
Sbjct: 115 LT-----PDDNWLLSLPLFHV-----------SGLAI-VMRSLLAGGALVLPDKFDAEAI 157

Query: 305 MEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNK 364
            E ++    T  S VP    R+       + S GA                       + 
Sbjct: 158 AEALENHGVTHISLVPTQLQRL-------LESLGA-------------------RWLSS- 190

Query: 365 AAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGC 424
                               L+A+L G AP+P  + E  R   G PL   YG+TE+ S  
Sbjct: 191 --------------------LRAVLLGGAPIPPSLLEQAR-QRGIPLYPTYGMTETASQV 229

Query: 425 FTSLADVF-NMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRP 483
            T   D F   +G+VG P+   E R+ +  +           GEI +RG +LF GY  + 
Sbjct: 230 ATLKPDDFLAKLGSVGKPLPGRELRIVNPQD-----------GEILVRGPSLFLGYLPQG 278

Query: 484 DLTEEVIVDGWFHTGDIGEWQ 504
            LT  +  DGWFHTGD+G   
Sbjct: 279 GLTPPLDEDGWFHTGDLGYLD 299

O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407

>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS)

 Score =  131 bits (331), Expect = 2e-33
 Identities = 89/292 (30%), Positives = 126/292 (43%), Gaps = 65/292 (22%)

Query: 221 NISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD 280
           + + I+YTSGTTG PKGVVLT+  + A   ++ + +  T       D     LPL H++ 
Sbjct: 89  DPALIIYTSGTTGRPKGVVLTHGNLAANARALVEAWRWT-----ASDVLLHALPLHHVHG 143

Query: 281 QIIETHCIH-KGCSIGFW-RGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGG 338
                HC    G S+ F  R D +         + T+F GVP +Y R             
Sbjct: 144 LFNALHCPLWAGASVEFLPRFDPQERDALRLLPRITVFMGVPTIYTR------------- 190

Query: 339 ALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIH 398
                                        LL+   F     A    L+  +SG+A LP+ 
Sbjct: 191 -----------------------------LLEHYEFDDAAAAAARNLRLFVSGSAALPVP 221

Query: 399 V-EEFLRVTSGAPLTQGYGLTESCSGCFTSLA-----DVFNMIGTVGVPMTTVEARLESV 452
           V E +   T G  L + YG+TE      T +A     D     GTVG+P+  VE R+  V
Sbjct: 222 VLERWEERT-GHTLLERYGMTE------TGMALSNPLDGERRPGTVGLPLPGVEVRI--V 272

Query: 453 PEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV-DGWFHTGDIGEW 503
            E G + L++   GEI +RG  +FS Y+ +P+ T E    DGWF TGD+G  
Sbjct: 273 DEDGGEPLAAGEVGEIQVRGPNVFSEYWNKPEATAEAFTEDGWFKTGDVGVV 324

MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430

>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

 Score =  130 bits (330), Expect = 8e-33
 Identities = 91/439 (20%), Positives = 145/439 (33%), Gaps = 88/439 (20%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           LTY ++     R  +A++  G   GDR  IY  N PE +IA+ A          +   L 
Sbjct: 41  LTYGDLRREVARLANALKDLGGVKGDRVAIYMPNSPEAVIALLATARIGAIPAVVSPGLS 100

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANV--SSSQKKEAEELG 195
           A AV   I      +    +                 K I    +     S       LG
Sbjct: 101 AEAVADRIADLGPKVLIADD-------GTFRN----GKEIALLEDADAVLSSVVVVPRLG 149

Query: 196 VSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQM 255
                ++E ++  +   E  P    +   ++YTSGTTG+PKG+V ++   + E       
Sbjct: 150 ---LWYDEAVEKASEKFEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRL-TAK 205

Query: 256 FVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCI----HKGCSIGFWRGDVRY----LMED 307
           F          D +++      IY      + +      G +   + G   Y    L E 
Sbjct: 206 FHGDLL---PGDRFWNSSDPGWIYGL---WYSVFSPLASGATTVLYDGRPFYSPERLWEA 259

Query: 308 IQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAP 367
           +++ K T+F   P    R+                             MK G+       
Sbjct: 260 LEKYKVTIFGTSPTFLRRL-----------------------------MKLGLG------ 284

Query: 368 LLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTS 427
             +    S +R         + S   PL     E+     G  +   YG TE+  G    
Sbjct: 285 --EPYDLSSLR--------VLGSAGEPLNPEAFEWFYSALGVWILDIYGQTETGMGFIAG 334

Query: 428 LADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVP--RGEICLRGNT--LFSGYYKRP 483
              V N  G+ G+P+     R         D  + VP   GE+ +R     +   Y+  P
Sbjct: 335 RPPVKN--GSSGLPLPGYAVRRV------DDEGNPVPPGVGELVVRLPWPGMALTYWNDP 386

Query: 484 DLTEEVIVDGWFHTGDIGE 502
           +  +E     W+ TGD  E
Sbjct: 387 ERYKEAYFGRWYRTGDWAE 405

Length = 528

>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase

 Score =  128 bits (324), Expect = 1e-32
 Identities = 95/435 (21%), Positives = 161/435 (37%), Gaps = 113/435 (25%)

Query: 79  TYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGA 138
           T+Q++   A     A++++G+  G R  + G N  E ++ + AC             L  
Sbjct: 1   TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHAC-------------LLL 47

Query: 139 NAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSC 198
            A   ++N        + EN+  + L  L          V               L  S 
Sbjct: 48  GAEIAMLNTR------LTENERTNQLEDLD---------VQLL------------LTDSL 80

Query: 199 FSWEEFLQLGTLDCELPPKKKTNIS---------TIMYTSGTTGEPKGVVLTNQAIVAEV 249
              ++F        E   + +T++S         T+M+TSGTTG+PK V  T +   A  
Sbjct: 81  LEEKDFQADSLDRIEAAGRYETSLSASFNMDQIATLMFTSGTTGKPKAVPHTFRNHYASA 140

Query: 250 LSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQ 309
           +   +    T     E+D +   LPL HI    I    + +G ++       + L+E I 
Sbjct: 141 VGSKENLGFT-----EDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDKFNQ-LLEMIA 194

Query: 310 ELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLL 369
             + T  S VP   +R+                             + +G          
Sbjct: 195 NERVTHISLVPTQLNRL-----------------------------LDEGGHNE------ 219

Query: 370 DSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLA 429
                          L+ +L G + +P  + E  +   G P+   YG+TE+CS   T+  
Sbjct: 220 --------------NLRKILLGGSAIPAPLIEEAQ-QYGLPIYLSYGMTETCSQVTTATP 264

Query: 430 DVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEV 489
           ++ +    VG P+   E +++   + G+        GEI ++G  L  GY  + +LT   
Sbjct: 265 EMLHARPDVGRPLAGREIKIKVDNKEGH--------GEIMVKGANLMKGYLYQGELTPAF 316

Query: 490 IVDGWFHTGDIGEWQ 504
              GWF+TGDIGE  
Sbjct: 317 EQQGWFNTGDIGELD 331

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436

>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated

 Score =  123 bits (311), Expect = 3e-30
 Identities = 115/444 (25%), Positives = 189/444 (42%), Gaps = 74/444 (16%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA---CNSQAITYVPLYD 134
           +T+   +D   RF + ++  GV  GDR  I   NCP+ +I            +   PLY 
Sbjct: 50  ITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVVQTNPLYT 109

Query: 135 TLGANAVEFIINHAEVSIAFVQE---NKIPSILSCLPRCCLYLKTIVSFANVSSS----- 186
                 +E+ ++ +   +    +    ++ ++ S      + +  I  F     +     
Sbjct: 110 E---RELEYQLHDSGAKVILCLDLVFPRVTNVQSATKIEHVIVTRIADFLPFPKNLLYPF 166

Query: 187 -QKKEAE-----ELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVL 240
            QKK++          +   W    +      E+P   + +++ + YT GTTG PKGV+L
Sbjct: 167 VQKKQSNLVVKVSESETIHLWNSVEKEVNTGVEVPCDPENDLALLQYTGGTTGFPKGVML 226

Query: 241 TNQAIVAEVLSVDQMFVVTGKVCSE-EDTYFSFLPLAHIYDQI-IETHCIHKGCSIGFW- 297
           T++ +V+  L    M V     C E E+     LP  H+Y    +    I +G  +    
Sbjct: 227 THKNLVSNTL----MGVQWLYNCKEGEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIP 282

Query: 298 RGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMK 357
           + D++ + E I++ K T+F G P     IY  + N                         
Sbjct: 283 KFDMKMVFEAIKKHKVTLFPGAPT----IYIALLN------------------------- 313

Query: 358 KGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGL 417
                   +PLL     S IR        A +SG+APLP+ V+E     +G  L +GYGL
Sbjct: 314 --------SPLLKEYDISSIR--------ACISGSAPLPVEVQEKFETVTGGKLVEGYGL 357

Query: 418 TESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFS 477
           TES     ++      + G++GVP    EA + S+ E G +AL     GEI ++G  +  
Sbjct: 358 TESSPVTHSNFLWEKRVPGSIGVPWPDTEAMIMSL-ETG-EALPPGEIGEIVVKGPQIMK 415

Query: 478 GYYKRPDLTEEVIVDGWFHTGDIG 501
           GY+ +P+ T  V+ DGW HTGD+G
Sbjct: 416 GYWNKPEETAAVLQDGWLHTGDVG 439

Length = 563

>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional

 Score =  118 bits (299), Expect = 7e-29
 Identities = 112/431 (25%), Positives = 168/431 (38%), Gaps = 97/431 (22%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           +T+ E+++A +     + + GV  GDR  +   N  E I+ + A        V L   L 
Sbjct: 28  VTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQLGAVAVLLNTRLS 87

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
              + + ++ AEV      ++             L     V FA + +  K+EAE     
Sbjct: 88  REELLWQLDDAEVKCLITDDDFEAK---------LIPGISVKFAELMNGPKEEAEIQ--- 135

Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLT--NQAIVAEVLSVDQM 255
               EEF     LD          ++TIMYTSGTTG+PKGV+ T  N    A V S   +
Sbjct: 136 ----EEF----DLD---------EVATIMYTSGTTGKPKGVIQTYGNHWWSA-VGSALNL 177

Query: 256 FVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSI----GFWRGDVRYLMEDIQEL 311
            +      +E+D + + +P+ HI    I    +  G  +     F   D   + + +Q  
Sbjct: 178 GL------TEDDCWLAAVPIFHISGLSILMRSVIYGMRVVLVEKF---DAEKINKLLQTG 228

Query: 312 KPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDS 371
             T+ S V  +  R              L ++L E  Y      M           LL  
Sbjct: 229 GVTIISVVSTMLQR--------------LLERLGEGTYPSSFRCM-----------LL-- 261

Query: 372 LVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFT-SLAD 430
                     GG       G AP P+  +   +   G P+ Q YG+TE+ S   T S  D
Sbjct: 262 ----------GG-------GPAPKPLLEQCKEK---GIPVYQSYGMTETASQIVTLSPED 301

Query: 431 VFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI 490
               +G+ G P+   E ++E         +     GEI ++G  +  GY  R D T E  
Sbjct: 302 ALTKLGSAGKPLFPCELKIEK----DGVVVPPFEEGEIVVKGPNVTKGYLNREDATRETF 357

Query: 491 VDGWFHTGDIG 501
            DGWF TGDIG
Sbjct: 358 QDGWFKTGDIG 368

Length = 483

>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated

 Score =  114 bits (288), Expect = 2e-27
 Identities = 94/437 (21%), Positives = 163/437 (37%), Gaps = 100/437 (22%)

Query: 78  LTYQEVYDAAIRFGSAMRSR-GVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTL 136
           +TY+++++   +  + +     V  G+R  I   N  E+I+ + A        VPL   L
Sbjct: 28  MTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECIAVPLNIRL 87

Query: 137 GANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSS-QKKEAEELG 195
             N + F +  +  ++ FV++                     +F N++ S QK    +  
Sbjct: 88  TENELIFQLKDSGTTVLFVEK---------------------TFQNMALSMQKVSYVQRV 126

Query: 196 VSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAI----VAEVLS 251
           +S  S +E       +     +  + I  I YTSGTTG+PKG VLT + +    +    +
Sbjct: 127 ISITSLKEIEDRKIDNFVEKNESASFI--ICYTSGTTGKPKGAVLTQENMFWNALNNTFA 184

Query: 252 VDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIET--HCIHKGCSIGFWRGDVRYLMEDIQ 309
           +D          +  D     LPL HI    +         G  I   + +    +  I+
Sbjct: 185 ID---------LTMHDRSIVLLPLFHIGGIGLFAFPTLFAGGVIIVPRKFEPTKALSMIE 235

Query: 310 ELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLL 369
           + K T+  GVP ++  +                                           
Sbjct: 236 KHKVTVVMGVPTIHQAL-------------------------------------INCSKF 258

Query: 370 DSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLR--VTSGAPLTQGYGLTESCSGCFTS 427
           ++     +R  +        +G AP P   EE +R  +  G    QG+G+TE+    F  
Sbjct: 259 ETTNLQSVRWFY--------NGGAPCP---EELMREFIDRGFLFGQGFGMTETSPTVFML 307

Query: 428 LADVF-NMIGTVGVPMTTVEARLESVPEMGYDALSSVPRG---EICLRGNTLFSGYYKRP 483
             +     +G++G P+   +  L        +  + V  G   E+ +RG  +   Y+ RP
Sbjct: 308 SEEDARRKVGSIGKPVLFCDYELID------ENKNKVEVGEVGELLIRGPNVMKEYWNRP 361

Query: 484 DLTEEVIVDGWFHTGDI 500
           D TEE I DGW  TGD+
Sbjct: 362 DATEETIQDGWLCTGDL 378

Length = 496

>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis

 Score =  111 bits (280), Expect = 4e-27
 Identities = 78/291 (26%), Positives = 119/291 (40%), Gaps = 78/291 (26%)

Query: 225 IMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIE 284
           I++TSGTTG PKGV LT++ ++A   ++ +   +T       D   + +PL HI+  I+ 
Sbjct: 7   ILHTSGTTGRPKGVPLTHKNLLASARNIAKSHKLT-----PSDRCLNVMPLFHIHGLIVS 61

Query: 285 T-HCIHKGCSI---------GFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKI 334
               +  G S+          FW        +DI + + T +S VP              
Sbjct: 62  LLATLLAGGSVVCPPKFSASKFW--------DDIAKYRVTWYSAVP-------------- 99

Query: 335 SSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAP 394
                + + L + A         K  P          L F  IR           S +AP
Sbjct: 100 ----TIHQILLKTA---------KPNPGKPPP----RLRF--IR-----------SASAP 129

Query: 395 LPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTS-LADVFNMIGTVGVPMTTVEARLESVP 453
           LP  V + L    G P+ + YG+TE+     ++ L  +    G+VG P   VE  +    
Sbjct: 130 LPPAVLDRLEKRFGVPVLEAYGMTEAAHQIASNPLPPLVRKPGSVGRP-AGVEVAI---- 184

Query: 454 EMGYDALSSVP---RGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIG 501
            +  D    +P    GEI +RG  + +GY   P+   E   DGWF TGD+G
Sbjct: 185 -LD-DDGRPLPPGQEGEIVIRGPNVTAGYLNNPEANREAFRDGWFRTGDLG 233

FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345

>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated

 Score =  112 bits (282), Expect = 1e-26
 Identities = 83/289 (28%), Positives = 123/289 (42%), Gaps = 75/289 (25%)

Query: 225 IMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIE 284
           I+YTSGTTG PKGVVL+ +AI A++ ++ + +  T      +D     LPL H++  ++ 
Sbjct: 133 IVYTSGTTGPPKGVVLSRRAIAADLDALAEAWQWTA-----DDVLVHGLPLFHVHGLVLG 187

Query: 285 THCIHKGCSIGFWR--GDVRYLMEDIQE-------LKPTMFSGVPRVYDRIYTGISNKIS 335
                    +G  R      +      E          T++ GVP V+ RI    +    
Sbjct: 188 V--------LGPLRIGNRFVHTGRPTPEAYAQALSEGGTLYFGVPTVWSRI----AADPE 235

Query: 336 SGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPL 395
           +  AL                                         G RL  ++SG+A L
Sbjct: 236 AARALR----------------------------------------GARL--LVSGSAAL 253

Query: 396 PIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARL--ESVP 453
           P+ V + L   +G    + YG+TE+     ++ AD     G VG+P+  VE RL  E   
Sbjct: 254 PVPVFDRLAALTGHRPVERYGMTETLITL-STRADGERRPGWVGLPLAGVETRLVDEDGG 312

Query: 454 EMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV-DGWFHTGDIG 501
            + +D   +V  GE+ +RG TLF GY  RPD T      DGWF TGD+ 
Sbjct: 313 PVPHDG-ETV--GELQVRGPTLFDGYLNRPDATAAAFTADGWFRTGDVA 358

Length = 471

>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated

 Score =  112 bits (281), Expect = 1e-26
 Identities = 107/444 (24%), Positives = 162/444 (36%), Gaps = 118/444 (26%)

Query: 77  WLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTL 136
           W TY E+     R  + +R RG   G+R  +   N    +    AC      YVPL   L
Sbjct: 23  W-TYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIYVPLNWRL 81

Query: 137 GANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGV 196
            A+ ++ ++  AE     +  +   +                  A   +S          
Sbjct: 82  SASELDALLQDAEP--RLLLGDDAVAAGRTDV---------EDLAAFIASADALEPADTP 130

Query: 197 SCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMF 256
           S                +PP++   +S I++TSGT+G+PKGV+L+ + +     +    F
Sbjct: 131 S----------------IPPER---VSLILFTSGTSGQPKGVMLSERNLQQTAHN----F 167

Query: 257 VVTGKVCSEEDTYFSFL---PLAHIYDQI--IETHCIHKGC---SIGF-------WRGDV 301
            V G+V    D + SFL   P+ HI   I  +       G    S GF         GD 
Sbjct: 168 GVLGRV----DAHSSFLCDAPMFHIIGLITSVRPVLAVGGSILVSNGFEPKRTLGRLGD- 222

Query: 302 RYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMP 361
                    L  T +  VP++                                   +  P
Sbjct: 223 -------PALGITHYFCVPQMAQAF-------------------------------RAQP 244

Query: 362 QNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLR--VTSGAPLTQGYGLTE 419
              AA L                L A+ +G AP   H  E +   +  G P+  G+G++E
Sbjct: 245 GFDAAAL--------------RHLTALFTGGAP---HAAEDILGWLDDGIPMVDGFGMSE 287

Query: 420 SCS--GCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFS 477
           + +  G       +    G  G+P  TV+ R+  V + G D  + VP GE+ LRG  L  
Sbjct: 288 AGTVFGMSVDCDVIRAKAGAAGIPTPTVQTRV--VDDQGNDCPAGVP-GELLLRGPNLSP 344

Query: 478 GYYKRPDLTEEVIV-DGWFHTGDI 500
           GY++RP  T      DGWF TGDI
Sbjct: 345 GYWRRPQATARAFTGDGWFRTGDI 368

Length = 488

>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas)

 Score =  106 bits (268), Expect = 7e-25
 Identities = 71/297 (23%), Positives = 110/297 (37%), Gaps = 68/297 (22%)

Query: 214 LPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFL 273
           L   K  + + I++TSG+ G PKGVVL+++ ++A +  +  +        + ED     L
Sbjct: 139 LAGAKPDDPAVILFTSGSEGLPKGVVLSHRNLLANIDQIAAVID-----LNTEDVLLGAL 193

Query: 274 PLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELK------PTMFSGVPR-VYDRI 326
           PL H +           G ++          +  +  L+      P     +   + D  
Sbjct: 194 PLFHAF-----------GLTVTLL-------LPLLTGLRVVYYPNPLDAKKIAELIRDYK 235

Query: 327 YTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQ 386
            T +              F         N                  FS +R        
Sbjct: 236 ATIL---------CGTPTF---LRGYARNAHPED-------------FSSLRLVV----- 265

Query: 387 AMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVE 446
              +GA  LP    E      G  + +GYG TE CS   +    + N  GTVG P+  +E
Sbjct: 266 ---AGAEKLPEATRELFEEKFGIRILEGYGATE-CSPVISVNTPMGNKPGTVGRPLPGIE 321

Query: 447 ARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV--DGWFHTGDIG 501
            R+ S     ++ L     G + +RG  + SGY    + T EV V  DGW+ TGDIG
Sbjct: 322 VRIVSPE--THEELPIGEGGLLLVRGPNVMSGYLNNEEKTSEVEVLGDGWYDTGDIG 376

Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489

>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase)

 Score =  103 bits (258), Expect = 1e-23
 Identities = 83/287 (28%), Positives = 114/287 (39%), Gaps = 66/287 (22%)

Query: 225 IMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHI--YDQI 282
           ++YTSGTTGEPKGV+ T+  ++AEV S  +   +T      +D      PLAHI  +   
Sbjct: 98  LLYTSGTTGEPKGVMHTHNTLLAEVRSYVERLGLT-----PDDVVLMPSPLAHITGFLYG 152

Query: 283 IETHCIHKGCS-IGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALS 341
           +E   +  G + +   R D    +E I+E   T   G                       
Sbjct: 153 LEL-PLLLGATVVLQDRWDPARALELIREHGVTFTMGAT--------------------- 190

Query: 342 KKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLP-IHVE 400
                F  +  L         + A P L SL             +  L G AP+P     
Sbjct: 191 ----PFLAD--LLAA-----ADAAGPDLPSL-------------RVFLCGGAPVPRELAR 226

Query: 401 EFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMI-GTVGVPMTTVEARLESVPEMGYDA 459
                  GA + + YG+TE       +  D  +    T G P+  VE R+  V + G D 
Sbjct: 227 RAAEAL-GAKVVRAYGMTEVPLVTVGTPDDPDDKRAATDGRPVPGVEVRI--VDDDGND- 282

Query: 460 LSSVPR---GEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEW 503
              VP    GE+ +RG  LF GY   PD TE    DGWF TGD+G  
Sbjct: 283 ---VPPGEEGELQVRGPQLFLGYLDPPDNTEAFTDDGWFRTGDLGRL 326

Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437

>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional

 Score =  103 bits (259), Expect = 1e-23
 Identities = 78/288 (27%), Positives = 131/288 (45%), Gaps = 60/288 (20%)

Query: 221 NISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD 280
           +I+ + YT GTTG  KG +LT++ +VA +    Q    TGK+    +   + LPL HI+ 
Sbjct: 209 DIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGKLEEGCEVVITALPLYHIFA 268

Query: 281 QIIETHCIHK--GCS--IGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISS 336
                    K  GC+  I   R D+   ++++++ + T F+GV    + ++ G+ N    
Sbjct: 269 LTANGLVFMKIGGCNHLISNPR-DMPGFVKELKKTRFTAFTGV----NTLFNGLLN---- 319

Query: 337 GGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLP 396
                                         P  D + FS ++   GG +    S A    
Sbjct: 320 -----------------------------TPGFDQIDFSSLKMTLGGGMAVQRSVA---- 346

Query: 397 IHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMG 456
              E + +VT G  L + YGLTE+      +   +    G++G+P+ + +A ++      
Sbjct: 347 ---ERWKQVT-GLTLVEAYGLTETSPAACINPLTLKEYNGSIGLPIPSTDACIKD----- 397

Query: 457 YDALSSVPRGEI---CLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGDI 500
            DA + +  GEI   C++G  +  GY+KRP+ T +V+  DGW HTGDI
Sbjct: 398 -DAGTVLAIGEIGELCIKGPQVMKGYWKRPEETAKVMDADGWLHTGDI 444

Length = 560

>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  101 bits (253), Expect = 1e-22
 Identities = 90/459 (19%), Positives = 142/459 (30%), Gaps = 122/459 (26%)

Query: 72  VGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVP 131
           V     LTY E+   A R    + S GV PG+   I      E ++A+ A       YVP
Sbjct: 247 VRGGQQLTYAELDARANRLARLLISLGVGPGETVAILADRSLELVVALLAVLKAGAAYVP 306

Query: 132 LYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEA 191
           L     A  + +I+  +  ++   Q +     L         L    + + +  +     
Sbjct: 307 LDPLYPAERLAYILEDSRPTLLLTQAH-----LRVDDVGLPGLALDDALSEIPDTDPIPQ 361

Query: 192 EELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLS 251
             LG                          ++ I+YTSG+TG+PKGV + ++A+   +  
Sbjct: 362 ALLG------------------------DALAYIIYTSGSTGQPKGVRIEHRALANLLND 397

Query: 252 VDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGF--------WRGDVRY 303
               F +       +D   +   L+           I      G          + D   
Sbjct: 398 AGARFGLD-----ADDRVLALASLSF----DASVFEIFGALLEGARLVLAPALLQVDPAA 448

Query: 304 LMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQN 363
           L+E ++    T+   VP                                L  +       
Sbjct: 449 LLELLEAQGITVLLLVP-------------------------------LLLRL------- 470

Query: 364 KAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHV--EEFLRVTSGAPLTQGYGLTESC 421
               LL + +   +      RL+ +LSG   LP+ +             L   YG TE  
Sbjct: 471 ----LLLAALAPDLISP-CERLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTE-- 523

Query: 422 SGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGY-----------DALSSVP---RGE 467
                          T+  P   + A LES   +G              L  +P    GE
Sbjct: 524 --------------ATLDAPSFPISAELESRVPIGRPVANTQLYILDQGLRPLPLGVPGE 569

Query: 468 ICLRGNTLFSGYYKRPDLTEE-VIVDGWFHTGDIGEWQP 505
           + + G  L  GY  RPDLT E  I    + TGD+     
Sbjct: 570 LYIAGLGLALGYLNRPDLTAERFIALRLYRTGDLARPLA 608

Length = 642

>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase

 Score = 99.7 bits (249), Expect = 3e-22
 Identities = 119/448 (26%), Positives = 177/448 (39%), Gaps = 102/448 (22%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACN---SQAITYVPLYD 134
            TY +V   + R  + +   G+  GD   +   NCPE+++A    +   +   T  P Y 
Sbjct: 51  YTYADVELLSRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAFLGASRRGAVTTTANPFY- 109

Query: 135 TLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEEL 194
                  E I   A+ S A     K+    SC      Y+  +   A          ++ 
Sbjct: 110 ----TPAE-IAKQAKASGA-----KLIITQSC------YVDKLKGLAEDDGVTVVTIDDP 153

Query: 195 GVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQ 254
              C  + E  Q    +         ++  + Y+SGTTG PKGV+LT++ +V    SV Q
Sbjct: 154 PEGCLHFSELTQADENELPEVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVT---SVAQ 210

Query: 255 MFVVTGKV----CSEEDTYFSFLPLAHIYDQIIETHCI-----HKGCSIGFWRG-DVRYL 304
              V G+        +D     LP+ HIY      + +       G +I      ++  L
Sbjct: 211 Q--VDGENPNLYFHSDDVILCVLPMFHIY----SLNSVLLCGLRVGAAILIMPKFEIGAL 264

Query: 305 MEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNK 364
           +E IQ  K T+   VP +                     +   A +              
Sbjct: 265 LELIQRHKVTIAPFVPPI---------------------VLAIAKS-------------- 289

Query: 365 AAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVT-SGAPLTQGYGLTES--- 420
             P+++    S IR         +LSGAAPL   +E+  R     A L QGYG+TE+   
Sbjct: 290 --PVVEKYDLSSIR--------MVLSGAAPLGKELEDAFRAKLPNAVLGQGYGMTEAGPV 339

Query: 421 CSGCFTSLADVFNM-IGTVGVPMTTVE-ARLESV-PEMGYDALSSVPR---GEICLRGNT 474
            + C     + F +  G+ G   T V  A L+ V PE G    +S+PR   GEIC+RG  
Sbjct: 340 LAMCLAFAKEPFPVKSGSCG---TVVRNAELKIVDPETG----ASLPRNQPGEICIRGPQ 392

Query: 475 LFSGYYKRPDLTEEVI-VDGWFHTGDIG 501
           +  GY   P+ T   I  DGW HTGDIG
Sbjct: 393 IMKGYLNDPEATANTIDKDGWLHTGDIG 420

Length = 537

>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase)

 Score = 98.9 bits (247), Expect = 4e-22
 Identities = 93/439 (21%), Positives = 149/439 (33%), Gaps = 96/439 (21%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           LTY E+ +   R+G+A+R  G+   +R  +   + PE+  A           VP+   L 
Sbjct: 31  LTYGELQEEVNRWGNALRELGIERENRVLLILLDTPEFPTAFWGAIKIGAVPVPINTLLT 90

Query: 138 ANAVEFIINHAEVSIAFVQE---NKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEEL 194
            +   + +N +   +  + E     +   L   P    +L+ ++               L
Sbjct: 91  PDDYRYYLNDSRARVLVISEELWEVLKPALQKDP----HLRHVI------VVGGAGPGAL 140

Query: 195 GVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAI-VAEVLSVD 253
                S+ + +     + E       +++  +Y+SG+TG PKGVV  +  + V       
Sbjct: 141 -----SYAQLIATAAEELEAAATSADDMAFWLYSSGSTGRPKGVVHLHHDMLVTAEAYAK 195

Query: 254 QMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLM-------- 305
            +  +T     E+D  FS   L   Y        +  G       G    LM        
Sbjct: 196 NVLGIT-----EDDVVFSAAKLFFAYG-------LGNGLYFPLSVGATTVLMPERPTPDA 243

Query: 306 --EDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQN 363
               I+  KPT+F GVP +Y                                    M   
Sbjct: 244 VFATIERYKPTVFFGVPTLY----------------------------------AAMLAA 269

Query: 364 KAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSG 423
              P  D    S +R          +S    LP  +    +   G  +  G G TE    
Sbjct: 270 PEKPERD---LSSLR--------LCVSAGEALPAEIGYRWKELFGLEILDGIGSTEMLHI 318

Query: 424 CFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEI---CLRGNTLFSGYY 480
             ++        GT G P+   E +L  V E G      V  GEI    +RG++  +GY+
Sbjct: 319 FLSNRPGAVKY-GTSGKPVPGYEVKL--VDEDG----EEVADGEIGELWVRGDSSAAGYW 371

Query: 481 KRPDLTEEVIVDGWFHTGD 499
            R + T E  V  W  TGD
Sbjct: 372 NRREKTRETFVGEWTRTGD 390

Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506

>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated

 Score = 99.3 bits (248), Expect = 4e-22
 Identities = 121/468 (25%), Positives = 186/468 (39%), Gaps = 117/468 (25%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYV---PLY- 133
           +TY E+ + +    + ++SRG+  G R  I   N  ++ +A+ A        V   PLY 
Sbjct: 49  ITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVAIAAVLRAGYVVVNVNPLYT 108

Query: 134 ---------DTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLK-TIVSFANV 183
                    D+ GA A+  + N A      + +  +  ++       L  K  IV+F  V
Sbjct: 109 PRELEHQLKDS-GAEAIVVLENFATTVQQVLAKTAVKHVVVASMGDLLGFKGHIVNF--V 165

Query: 184 SSSQKK--EAEELGVSCFSWEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVL 240
               KK   A  L      + + L  G     +       +++ + YT GTTG  KG  L
Sbjct: 166 VRRVKKMVPAWSLP-GHVRFNDALAEGARQTFKPVKLGPDDVAFLQYTGGTTGVSKGATL 224

Query: 241 TNQAIVAEVLS--------------VDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETH 286
            ++ IVA VL                DQ+  V              LPL HI+     T 
Sbjct: 225 LHRNIVANVLQMEAWLQPAFEKKPRPDQLNFVCA------------LPLYHIFAL---TV 269

Query: 287 CIHKGCSIGFWRGDVRYLMED-------IQELKPTMFSGVPRVYDRIYTGISNKISSGGA 339
           C      +G   G    L+ +       I+ELK       P V + +Y  + N       
Sbjct: 270 C----GLLGMRTGGRNILIPNPRDIPGFIKELKKYQVHIFPAV-NTLYNALLN------- 317

Query: 340 LSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHV 399
                                      P  D L FSK+  A GG + A+    A      
Sbjct: 318 --------------------------NPDFDKLDFSKLIVANGGGM-AVQRPVA------ 344

Query: 400 EEFLRVTSGAPLTQGYGLTES--CSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGY 457
           E +L +T G P+T+GYGL+E+   + C    A  F+  GT+G+P+ + E  +        
Sbjct: 345 ERWLEMT-GCPITEGYGLSETSPVATCNPVDATEFS--GTIGLPLPSTEVSIRD------ 395

Query: 458 DALSSVPRG---EICLRGNTLFSGYYKRPDLTEEVIV-DGWFHTGDIG 501
           D  + +P G   EIC+RG  + +GY+ RPD T +V+  DG+F TGD+G
Sbjct: 396 DDGNDLPLGEPGEICIRGPQVMAGYWNRPDETAKVMTADGFFRTGDVG 443

Length = 557

>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional

 Score = 97.2 bits (242), Expect = 2e-21
 Identities = 116/470 (24%), Positives = 178/470 (37%), Gaps = 123/470 (26%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
            T++++ DA  R    + + GV PGDR GI+  NC EW++   A        V +     
Sbjct: 46  YTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFATARIGAILVNINPAYR 105

Query: 138 ANAVEFIINHAEVS-------------IAFVQE------NKIPSILSC--LPRCCLYLKT 176
           A+ +E+ +  + V               A +QE         P  L+C  LP     L+ 
Sbjct: 106 ASELEYALGQSGVRWVICADAFKTSDYHAMLQELLPGLAEGQPGALACERLPE----LRG 161

Query: 177 IVSFANVSSS-----QKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGT 231
           +VS A           + +A    VS  +  E  +  +LD + P         I YTSGT
Sbjct: 162 VVSLAPAPPPGFLAWHELQARGETVSREALAE--RQASLDRDDP-------INIQYTSGT 212

Query: 232 TGEPKGVVLT------NQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIET 285
           TG PKG  L+      N   VAE L +           +E D     +PL H +  ++  
Sbjct: 213 TGFPKGATLSHHNILNNGYFVAESLGL-----------TEHDRLCVPVPLYHCFGMVLAN 261

Query: 286 -HCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSK 342
             C+  G  + +     D    ++ ++E + T   GVP ++                   
Sbjct: 262 LGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMF------------------- 302

Query: 343 KLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEF 402
            + E  +                 P   +   S +R          +   AP PI V   
Sbjct: 303 -IAELDH-----------------PQRGNFDLSSLRTG--------IMAGAPCPIEVMR- 335

Query: 403 LRVTSG---APLTQGYGLTESCSGCF-TSLADVFNM-IGTVGVPMTTVEARLESVPEMGY 457
            RV      A +   YG+TE+      T+ AD     + TVG     +E ++        
Sbjct: 336 -RVMDEMHMAEVQIAYGMTETSPVSLQTTAADDLERRVETVGRTQPHLEVKV-------V 387

Query: 458 DAL-SSVPRGEI---CLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGDIGE 502
           D   ++VPRGEI   C RG ++  GY+  P+ T E I  DGW HTGD+  
Sbjct: 388 DPDGATVPRGEIGELCTRGYSVMKGYWNNPEATAESIDEDGWMHTGDLAT 437

Length = 558

>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase

 Score = 95.5 bits (238), Expect = 4e-21
 Identities = 65/289 (22%), Positives = 104/289 (35%), Gaps = 71/289 (24%)

Query: 225 IMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIE 284
           I YTSGTTG PKG + T++ ++A   +      +T      +    +FLPL H+      
Sbjct: 89  IPYTSGTTGLPKGCMHTHRTVLATAAASAAWSGLT-----PDSVLLAFLPLFHVAG---M 140

Query: 285 THCIHKGCSIG-----FWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGA 339
              ++     G       R D       I+  + T ++ +                    
Sbjct: 141 QGSMNAPIYTGATLVLLTRWDREAAARAIERYRVTHWTNIV------------------- 181

Query: 340 LSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHV 399
                                       LL      +  +     L+ +  G A LP  V
Sbjct: 182 -----------------------TMVVDLLAHP---RFADYDLSSLKVVGGGGAALPPAV 215

Query: 400 EEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEAR---LESVPEMG 456
            E L+  +G    +GYGLTE+ + C             +G+P+   +AR    E+  E+ 
Sbjct: 216 AERLKALTGLLYEEGYGLTETHT-CTHFNPPDRPKPQCLGIPVFGTDARVIDPETGEELP 274

Query: 457 YDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV----DGWFHTGDIG 501
                    GEI +RG  +F GY+ RP+ T E  +      +F TGD+G
Sbjct: 275 ---PGEE--GEIVVRGPQVFKGYWNRPEATAESFIELDGKRFFRTGDLG 318

The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430

>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases

 Score = 93.0 bits (232), Expect = 3e-20
 Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 3/88 (3%)

Query: 73  GPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNS-QAITYVP 131
           G +  +T+ E+ +   R  + + + GV PGDR  I   N PEW+IA  A  +  A+  VP
Sbjct: 1   GIWQTITWAELAERVRRLAAGLIALGVKPGDRVAILAENRPEWVIADLAILAAGAVP-VP 59

Query: 132 LYDTLGANAVEFIINHAEVSIAFVQENK 159
           +Y T     V +I+N +   + FV E+K
Sbjct: 60  IYPTSSPEEVAYILNDSGARVVFV-EDK 86

This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456

>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA

 Score = 93.5 bits (232), Expect = 3e-20
 Identities = 78/307 (25%), Positives = 127/307 (41%), Gaps = 54/307 (17%)

Query: 200 SWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVT 259
           ++ +F++      E P     +++ + YT GTTG PKG +LT+  + + V   D     +
Sbjct: 172 TYADFVKGAAAPAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIYDVWGKPS 231

Query: 260 GKVCSEEDTYFSFLPLAHIYD-QIIETHCIHKGCSIGF-WRGDVRYLMEDIQELKPTMFS 317
                + +     LPL HIY   +I    + +G  I    R DV  +  DI+E + T+F 
Sbjct: 232 RATRGDVERVICVLPLFHIYALTVILLRSLRRGDLISLHQRFDVAAVFRDIEEKRATVFP 291

Query: 318 GVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKI 377
           GVP ++  +                                        P L+    S  
Sbjct: 292 GVPTMWIAL-------------------------------------ANDPSLEKRDLSS- 313

Query: 378 REAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGT 437
                  L  + SG APLP+ V  F    +G  L  G+G+TE+CS       +  +  G+
Sbjct: 314 -------LATIGSGGAPLPVEVANFFERKTGLKLKSGWGMTETCSPGTGHPPEGPDKPGS 366

Query: 438 VGVPMTTVEARLESVPEMGYDALSSVPRGEIC---LRGNTLFSGYYKRPDLTEEVIVDGW 494
           +G+ +  +E  + S+     D    +P GE+    +RG  +  GY+ RP+ + E  V   
Sbjct: 367 IGLMLPGIELDVVSLD----DPTKVLPPGEVGELRIRGPNVTRGYWNRPEESAEAFVGDR 422

Query: 495 FHTGDIG 501
           F TGDIG
Sbjct: 423 FLTGDIG 429

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541

>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated

 Score = 92.2 bits (230), Expect = 7e-20
 Identities = 113/466 (24%), Positives = 172/466 (36%), Gaps = 147/466 (31%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
            TY ++  A+ R  + + + GV PGDR  +     PE +    A       ++PL     
Sbjct: 29  YTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLATLRAGAVFLPLNTAYT 88

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
              +++ I  AE           P+++ C P           FA +S    K A   G  
Sbjct: 89  LAELDYFIGDAE-----------PALVVCDPAN---------FAWLS----KIAAAAGAP 124

Query: 198 CFSWEEFLQLGTLDC-----------------ELPPKKKTNISTIMYTSGTTGEPKGVVL 240
                    + TLD                  E  P+   +++ I+YTSGTTG  KG +L
Sbjct: 125 --------HVETLDADGTGSLLEAAAAAPDDFETVPRGADDLAAILYTSGTTGRSKGAML 176

Query: 241 T--NQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCI-HKGCSIGFW 297
           +  N    A  L     F       + +D     LP+ H +   + T+     G S+  +
Sbjct: 177 SHGNLLSNALTLVDYWRF-------TPDDVLIHALPIFHTHGLFVATNVALLAGASM-IF 228

Query: 298 RGDVRYLMEDIQELKP--TMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGN 355
               ++  + +  L P  T+  GVP  Y R                              
Sbjct: 229 LP--KFDPDAVLALMPRATVMMGVPTFYTR------------------------------ 256

Query: 356 MKKGMPQNKAAPLLDSLVFSKIREAFGG-RLQAMLSGAAPLPI--HVEEFLRVTSGAPLT 412
                       LL     +  REA    RL   +SG+APL    H E   R  +G  + 
Sbjct: 257 ------------LLQEPRLT--REAAAHMRL--FISGSAPLLAETHREFQER--TGHAIL 298

Query: 413 QGYGLTESCSGCFTSLADVFNMI-----------GTVGVPMTTVEARLESVPEMGYDALS 461
           + YG+TE+            NM            GTVG P+  V  R+   PE G    +
Sbjct: 299 ERYGMTET------------NMNTSNPYDGERRAGTVGFPLPGVSLRVTD-PETG----A 341

Query: 462 SVPRGEIC---LRGNTLFSGYYKRPDLT-EEVIVDGWFHTGDIGEW 503
            +P GEI    ++G  +F GY++ P+ T EE   DG+F TGD+G+ 
Sbjct: 342 ELPPGEIGMIEVKGPNVFKGYWRMPEKTAEEFRADGFFITGDLGKI 387

Length = 504

>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated

 Score = 90.8 bits (226), Expect = 2e-19
 Identities = 49/211 (23%), Positives = 80/211 (37%), Gaps = 35/211 (16%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
            TY E+  A  R  +A+   G+  GDR    G N   + +   AC      +VP+   L 
Sbjct: 37  WTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWLACARAGAVHVPVNFMLT 96

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
              + +I++H+      V     P++                    ++      + L +S
Sbjct: 97  GEELAYILDHSGARAFLVD----PALAPTAE---------------AALALLPVDTLILS 137

Query: 198 CF--------SWEEFLQLGTLDCELPPKKKTNIST---IMYTSGTTGEPKGVVLTNQAIV 246
                      W +F           P  +        I+YTSGT   PKG +LT++A++
Sbjct: 138 LVLGGREAPGGWLDFADWAEAGSVAEPDVELADDDLAQILYTSGTESLPKGAMLTHRALI 197

Query: 247 AEVLSVDQMFVVTGKVCSEEDTYFSFLPLAH 277
           AE +S     +V G + S +D     LPL H
Sbjct: 198 AEYVSC----IVAGDM-SADDIPLHALPLYH 223

Length = 523

>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 89.3 bits (222), Expect = 2e-19
 Identities = 68/291 (23%), Positives = 110/291 (37%), Gaps = 73/291 (25%)

Query: 228 TSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIET-H 286
           T GTTG PK    +++  VA       +  +        D   + LPL H+   I+    
Sbjct: 10  TGGTTGAPKLARHSHRNEVANAWMAALLSGLG-----PGDVLLNGLPLFHVGGAIVTGLA 64

Query: 287 CIHKGCSIGF-----WRGD--VRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGA 339
            + +G ++       +R    V    + ++  + T+ S VP V                A
Sbjct: 65  PLARGATVVLPTPSGFRNPAVVANFWKIVERYRVTLLSAVPTVL--------------AA 110

Query: 340 LSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHV 399
           L                          PL D+ + S         L+  L+GAAPLP+ V
Sbjct: 111 L-----------------------LQVPLGDADISS---------LRYALTGAAPLPVEV 138

Query: 400 EEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPM--TTVE-ARLESVPEMG 456
                  +G P+ +GYG+TE       +        G+VG+ +  T V  A+L++   +G
Sbjct: 139 ARRFEAVTGVPVVEGYGMTEGTGVSAINPRGGPRRPGSVGLRLPYTRVRVAKLDAGGALG 198

Query: 457 YDALSSVPRGEICLRGNTLFSGYYKRPDLTEE-----VIVDGWFHTGDIGE 502
            D       G + +RG  +F GY     L +       + DGW +TGD+G 
Sbjct: 199 RDCAPGEV-GVLAIRGPNVFPGY-----LNDAHNAGARLEDGWLNTGDLGR 243

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359

>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score = 90.3 bits (225), Expect = 3e-19
 Identities = 58/212 (27%), Positives = 89/212 (41%), Gaps = 9/212 (4%)

Query: 67  VSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQA 126
           VS    G     TY + Y    R  +A+ S GV PGDR      N    +    A     
Sbjct: 15  VSRTPDGSIHRYTYADFYRRVRRLANALESLGVKPGDRVATLAWNTHRHLELYFAVPGMG 74

Query: 127 ITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSS 186
                L   L    + +IINHAE  + FV ++ +P + +  PR      T+ +      +
Sbjct: 75  AVLHTLNPRLSPEQIAYIINHAEDKVIFVDDDFLPLLEAIAPRL----PTVKAVVVYDDA 130

Query: 187 QKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIV 246
              E     V  +  EE L+  + + E P   +   + + YTSGTTG PKGVV +++++V
Sbjct: 131 DMPETSLPNVYAY--EELLEEESPEYEWPELDENTAAGLCYTSGTTGNPKGVVYSHRSLV 188

Query: 247 AEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHI 278
              L+            SE DT    +P+ H+
Sbjct: 189 LHTLASAL---PDSLGLSESDTVLPVVPMFHV 217

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517

>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated

 Score = 87.1 bits (216), Expect = 3e-18
 Identities = 57/217 (26%), Positives = 89/217 (41%), Gaps = 10/217 (4%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           LTY  + +  +   S +R  G+  G+R  IY     E + AM         +VP+   L 
Sbjct: 26  LTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAGGVFVPINPLLK 85

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
           A  V  I+    V +      ++  +   LP C      I+    V           G  
Sbjct: 86  AEQVAHILADCNVRLLVTSSERLDLLHPALPGCHDLRTLII----VGDPAHASEGHPGEE 141

Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV 257
             SW + L LG  D    P   ++++ I+YTSG+TG PKGVVL+++ +VA   SV     
Sbjct: 142 PASWPKLLALGDAD-PPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYLE 200

Query: 258 VTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSI 294
                   +D   + LPL+  Y     T   + G ++
Sbjct: 201 NR-----PDDRLLAVLPLSFDYGFNQLTTAFYVGATV 232

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517

>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated

 Score = 86.0 bits (213), Expect = 9e-18
 Identities = 76/298 (25%), Positives = 127/298 (42%), Gaps = 73/298 (24%)

Query: 221 NISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD 280
           +++ + YT GTTG  KG +LT++ +VA +L    +  +   +    +   + LPL HIY 
Sbjct: 208 DVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRAL--MGSNLNEGCEILIAPLPLYHIY- 264

Query: 281 QIIETHCIHKGCSIGFWRGDVRYLMED-------IQELKPTMFSGVPRVYDRIYTGISNK 333
                   H  C      G+   L+ +       ++EL    FSG        + G++  
Sbjct: 265 ----AFTFH--CMAMMLIGNHNILISNPRDLPAMVKELGKWKFSG--------FVGLNT- 309

Query: 334 ISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAA 393
                     LF              +  N+A   LD   FS         L+  LSG  
Sbjct: 310 ----------LF------------VALCNNEAFRKLD---FS--------ALKLTLSGGM 336

Query: 394 PLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFN-----MIGTVGVPMTTVEAR 448
            L +   E  +  +G  + +GYG+TE      TS     N      +GT+G+P+ +   +
Sbjct: 337 ALQLATAERWKEVTGCAICEGYGMTE------TSPVVSVNPSQAIQVGTIGIPVPSTLCK 390

Query: 449 LESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGDIGEWQP 505
           +  + + G + L     GE+C++G  +  GY++RP+ T+E++  DGW  TGDI   Q 
Sbjct: 391 V--IDDDGNE-LPLGEVGELCVKGPQVMKGYWQRPEATDEILDSDGWLKTGDIALIQE 445

Length = 562

>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase

 Score = 84.6 bits (210), Expect = 2e-17
 Identities = 89/482 (18%), Positives = 150/482 (31%), Gaps = 145/482 (30%)

Query: 46  WQFFCDSAKRIPNNQML--GGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGD 103
                 +A R P+   +  G R+           LTY+E+  A  R  + + + G+ PGD
Sbjct: 18  GDLLAANAARHPDRTAVVDGPRR-----------LTYRELDAAVDRLAAGLLALGIGPGD 66

Query: 104 RCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSI 163
           R  +   N  E++I   A        V       A+ +      +E + A++  ++    
Sbjct: 67  RVLVQLPNVAEFVILYFALFKLGAIPVLALPAHRAHEIGHFARQSE-AKAYIIADRFSG- 124

Query: 164 LSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNIS 223
                           +A ++    +E  ++           QL                
Sbjct: 125 --------------FDYAALARELLEELPDVA--------LFQL---------------- 146

Query: 224 TIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVV--TGKVC--SEEDTYFSFLPLAHIY 279
               + GTTG PK +  T+          D ++    + + C       Y + LP AH +
Sbjct: 147 ----SGGTTGLPKLIPRTH---------NDYLYSARASAEACGLDPGTVYLAVLPAAHNF 193

Query: 280 DQIIETHCIHKGCSIG-FWRG---------DVRYLMEDIQELKPTMFSGVPRVYDRIYTG 329
                   +     +G    G                 I+  K T  + VP + +     
Sbjct: 194 -------TLSSPGLLGALLAGGTVVLHHPPSPDVAFPLIEREKVTHTALVPALLNLWL-- 244

Query: 330 ISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAML 389
                                               A   D    S         L+ + 
Sbjct: 245 -----------------------------------EAAEWDQADLS--------SLRVIQ 261

Query: 390 SGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMI-GTVGVPMTT-VEA 447
            G APL   +   +    G PL Q +G+ E     +T L D  ++I  T G P++   E 
Sbjct: 262 VGGAPLSPELARRVEERLGCPLQQVFGMAEG-LVNYTRLDDPPDVIMRTQGRPISPADEI 320

Query: 448 RLESVPEMGYDALSSVPRGEI---CLRGNTLFSGYYKRPDLTEEVIV-DGWFHTGDIGEW 503
           R+  V + G      VP GE+     RG     GYY+ P+        DG++ TGD+   
Sbjct: 321 RI--VDDQGEP----VPPGEVGELLTRGPYTIRGYYRAPEHNARAFTDDGFYRTGDLVRI 374

Query: 504 QP 505
             
Sbjct: 375 DA 376

2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483

>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated

 Score = 85.0 bits (211), Expect = 2e-17
 Identities = 71/303 (23%), Positives = 112/303 (36%), Gaps = 73/303 (24%)

Query: 215 PPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLP 274
            P    +++   +T GTTG PK    T+   VA       +  +        DT F  LP
Sbjct: 208 RPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLLGLG-----PGDTVFCGLP 262

Query: 275 LAHIYDQI-IETHCIHKGCSIGF-----WRGD--VRYLMEDIQELKPTMFSGVPRVYDRI 326
           L H+   +      + +G  +       +RG   +    + ++  +    SGVP VY   
Sbjct: 263 LFHVNALLVTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVY--- 319

Query: 327 YTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQ 386
                       AL +                 +P +     + SL ++           
Sbjct: 320 -----------AALLQ-----------------VPVD--GHDISSLRYA----------- 338

Query: 387 AMLSGAAPLPIHV-EEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTV 445
             L GAAPLP+ V   F   T G  + +GYGLTE+      +  D    IG+VG+ +   
Sbjct: 339 --LCGAAPLPVEVFRRFEAAT-GVRIVEGYGLTEATCVSSVNPPDGERRIGSVGLRLPYQ 395

Query: 446 EARLESVPEMGYDALSSVPR--GEICLRGNTLFSGYYKRPDLTEE-----VIVDGWFHTG 498
             R+  + + G           G +C+ G  +FSGY     L         + DGW +TG
Sbjct: 396 RVRVVILDDAGRYLRDCAVDEVGVLCIAGPNVFSGY-----LEAAHNKGLWLEDGWLNTG 450

Query: 499 DIG 501
           D+G
Sbjct: 451 DLG 453

Length = 632

>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase

 Score = 81.0 bits (200), Expect = 3e-16
 Identities = 105/470 (22%), Positives = 164/470 (34%), Gaps = 117/470 (24%)

Query: 79  TYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDT--- 135
           T+ + Y    R  SA+  R + PG    +   N P           +A   VP+      
Sbjct: 47  TWAQTYQRCRRLASALAKRSIGPGSTVAVIAPNIP--------AMYEAHFGVPMAGAVVN 98

Query: 136 -----LGANAVEFIINHAEVSIAFVQENKIP------SILSCLPRCCLYLKTIVSFANVS 184
                L A  + F++ H++  +  V +           IL+   +       ++   + +
Sbjct: 99  CVNIRLNAPTIAFLLEHSKSEVVMVDQEFFTLAEEALKILAEKKKSSFKPPLLIVIGDPT 158

Query: 185 SSQKKEAEELGVSCFSWEEFLQLGTLDCEL---PPKKKTNISTIMYTSGTTGEPKGVVLT 241
              K     LG     +E+FL+ G  D E    PP  +     + YTSGTT  PKGVVL 
Sbjct: 159 CDPKSLQYALGKGAIEYEKFLETG--DPEFAWKPPADEWQSIALGYTSGTTASPKGVVLH 216

Query: 242 NQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAH----IYDQIIETHCIHKGCSIGFW 297
           ++      LS   ++ +     +E   Y   LP+ H     +   +   C   G +I   
Sbjct: 217 HRGAYLMALSNALIWGM-----NEGAVYLWTLPMFHCNGWCFTWTLAALC---GTNICLR 268

Query: 298 RGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMK 357
           +   + +   I     T F   P V + I                               
Sbjct: 269 QVTAKAIYSAIANYGVTHFCAAPVVLNTIVNA---------------------------- 300

Query: 358 KGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHV----EEFLRVTSGAPLTQ 413
              P+++    L  +V              M +GAAP P  +    E+  RVT    L++
Sbjct: 301 ---PKSETILPLPRVV------------HVMTAGAAPPPSVLFAMSEKGFRVTHTYGLSE 345

Query: 414 GYGLTESCSGC--FTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSS--------- 462
            YG +  C+    + SL                 +ARL +   + Y  L           
Sbjct: 346 TYGPSTVCAWKPEWDSLPPE-------------EQARLNARQGVRYIGLEGLDVVDTKTM 392

Query: 463 --VPR-----GEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQP 505
             VP      GEI +RGN +  GY K P   EE   +GWFH+GD+G   P
Sbjct: 393 KPVPADGKTMGEIVMRGNMVMKGYLKNPKANEEAFANGWFHSGDLGVKHP 442

Length = 567

>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 79.6 bits (197), Expect = 4e-16
 Identities = 66/295 (22%), Positives = 112/295 (37%), Gaps = 72/295 (24%)

Query: 221 NISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIY- 279
           +++ I+YTSG+TGEPKGV+L+++ + A   S+ Q   +T     E+D   + LP +  Y 
Sbjct: 3   DLAAIIYTSGSTGEPKGVMLSHRNLTAGARSIAQYLELT-----EDDRILAVLPFSFDYG 57

Query: 280 -DQIIETHCIHKGCSIGFWRGDVRYLM-----EDIQELKPTMFSGVPRVYDRIYTGISNK 333
             Q++ T     G  +     + R+       + + + + T F+GVP  +          
Sbjct: 58  LSQLL-TAFRVGGTLV----LESRFAFPRDVLKHLAKERITGFAGVPTTW---------- 102

Query: 334 ISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAA 393
                                              L  L     RE F   L+ + +   
Sbjct: 103 ---------------------------------AQLLRLD-PLAREDF-PSLRYLTNAGG 127

Query: 394 PLP-IHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESV 452
            LP   + +  R    A L   YGLTE+    +    ++     ++G  +  VE  L  V
Sbjct: 128 ALPAKTILQLRRAFPDAKLFSMYGLTEAFRSTYLPPEELDRRPDSIGKAIPNVE--LWVV 185

Query: 453 PEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV------DGWFHTGDIG 501
            E G         GE+  RG  +  GY+  P+ T E +       +   +TGD+ 
Sbjct: 186 DEDGNRCAPGEV-GELVHRGANVMKGYWNDPEATAERLRPGPLPGEIVLYTGDLV 239

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350

>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated

 Score = 80.5 bits (199), Expect = 4e-16
 Identities = 80/301 (26%), Positives = 131/301 (43%), Gaps = 75/301 (24%)

Query: 215 PPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVD----------QMFVVTGKVCS 264
           P     +++ + YT GTTG  KG +LT++ ++A +              +  VVT     
Sbjct: 201 PELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGPLLHPGKELVVTA---- 256

Query: 265 EEDTYFSFLPLAHIYDQIIETHC---IHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPR 321
                   LPL HI+   +  +C   I  G        + R +   ++ELK   F+ +  
Sbjct: 257 --------LPLYHIF--ALTVNCLLFIELG-GQNLLITNPRDIPGFVKELKKYPFTAI-- 303

Query: 322 VYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAF 381
                 TG++            LF    N +    ++          LD   FS ++ + 
Sbjct: 304 ------TGVNT-----------LFNALLNNE--EFQE----------LD---FSSLKLSV 331

Query: 382 GGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLA-DVFNMIGTVGV 440
           GG       G A      E ++++T G  L +GYGLTE CS   +    D+    G++G+
Sbjct: 332 GG-------GMAVQQAVAERWVKLT-GQYLLEGYGLTE-CSPLVSVNPYDLDYYSGSIGL 382

Query: 441 PMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDI 500
           P+ + E +L  V + G +     P GE+ ++G  +  GY++RP+ T+EVI DGW  TGDI
Sbjct: 383 PVPSTEIKL--VDDDGNEVPPGEP-GELWVKGPQVMLGYWQRPEATDEVIKDGWLATGDI 439

Query: 501 G 501
            
Sbjct: 440 A 440

Length = 560

>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes

 Score = 79.7 bits (197), Expect = 5e-16
 Identities = 68/296 (22%), Positives = 101/296 (34%), Gaps = 84/296 (28%)

Query: 222 ISTIMYTSGTTGEPKGVV-------LTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLP 274
           I+  +YTSGTTG+PKGV+          +A   E+L +              D  FS   
Sbjct: 93  IAYWLYTSGTTGKPKGVMHRHRDPLTFAEAFARELLGL-----------QPGDRIFSSSK 141

Query: 275 LAHIYDQIIETHCIHKGCSIGFW------RGDVRYLMEDIQELKPTMFSGVPRVYDRIYT 328
           L   Y      + +      G              +++ +   +PT+  GVP +Y     
Sbjct: 142 LFFAYGLG---NSLLFPLFSGASAVLLPGWPTPEAVLDLLARHRPTVLFGVPALY----- 193

Query: 329 GISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAM 388
                +   GA S  LF                               +R          
Sbjct: 194 ---RALLESGAGSAPLF-----------------------------RSVRLCV------- 214

Query: 389 LSGAAPLPIHVEEFLRVTSGAPLTQGYGLTES----CSGCFTSLADVFNMIGTVGVPMTT 444
            S    LP  + E     +G  +  G G TE      S    +        GT G P+  
Sbjct: 215 -SAGEALPAGLAERWAEATGIEILDGIGSTEVLHIFISNRPGAAR-----PGTTGRPVPG 268

Query: 445 VEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDI 500
            EARL  V E G +  +    G++ +RG +L  GY+  P+ T+  + DGW  TGD 
Sbjct: 269 YEARL--VDESGREVPAGTV-GDLWVRGPSLAPGYWNLPEKTQRTLRDGWLRTGDR 321

This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436

>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like

 Score = 78.3 bits (193), Expect = 2e-15
 Identities = 78/301 (25%), Positives = 128/301 (42%), Gaps = 65/301 (21%)

Query: 212 CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV----VTGKVCSEED 267
              P  K+ +++ IMY+SGTTG  KGVVLT++ ++A V    ++FV       +    ++
Sbjct: 190 VPKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMV----ELFVRFEASQYEYPGSDN 245

Query: 268 TYFSFLPLAHIYD-QIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDR 325
            Y + LP+ HIY   +     +  G +I   R  D   +++ I   K T F  VP +   
Sbjct: 246 VYLAALPMFHIYGLSLFVVGLLSLGSTIVVMRRFDASDMVKVIDRFKVTHFPVVPPIL-- 303

Query: 326 IYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRL 385
                        AL+KK              KG+       +L SL             
Sbjct: 304 ------------MALTKK-------------AKGV----CGEVLKSLK------------ 322

Query: 386 QAMLSGAAPLPIH-VEEFLRVTSGAPLTQGYGLTESCS-GCFTSLADVFNMIGTVGVPMT 443
             +  GAAPL    +++F++        QGYG+TES + G      +  +   +VG+   
Sbjct: 323 -QVSCGAAPLSGKFIQDFVQTLPHVDFIQGYGMTESTAVGTRGFNTEKLSKYSSVGLLAP 381

Query: 444 TVEARLESVPEMGYDALSSVP---RGEICLRGNTLFSGYYKRPDLTEEVIV-DGWFHTGD 499
            ++A++     + +     +P    GE+ ++G  +  GY   P  T+  I  DGW  TGD
Sbjct: 382 NMQAKV-----VDWSTGCLLPPGNCGELWIQGPGVMKGYLNNPKATQSTIDKDGWLRTGD 436

Query: 500 I 500
           I
Sbjct: 437 I 437

Length = 560

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 77.2 bits (191), Expect = 4e-15
 Identities = 35/100 (35%), Positives = 47/100 (47%), Gaps = 14/100 (14%)

Query: 408 GAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVP--- 464
           G  L +GYG+TE+               G+ G P   VE R+  V E G +    VP   
Sbjct: 219 GVKLVEGYGMTETGVPIIAPGDP--APPGSCGRPRPGVEVRI--VDEDGRE----VPPGE 270

Query: 465 RGEICLRGN---TLFSGYYKRPDLTEEVIVDGWFHTGDIG 501
            GE+ +R      +F GYY  P+ T +   +GWFHTGD G
Sbjct: 271 VGELVVRPRRPWAMFKGYYGMPEATAKAWRNGWFHTGDRG 310

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS)

 Score = 76.3 bits (189), Expect = 7e-15
 Identities = 65/319 (20%), Positives = 102/319 (31%), Gaps = 107/319 (33%)

Query: 221 NISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTY-----FSF--- 272
           +++ ++YTSG+TG PKGV++ ++ +V  +  + + + +T       D       FSF   
Sbjct: 94  DLAYVIYTSGSTGRPKGVMVEHRGLVNLLAWLQERYGLT-----AGDRVLQFASFSFDAS 148

Query: 273 -----LPLA-----HIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRV 322
                 PL       +     E               D   L E ++E + T+   VP  
Sbjct: 149 VWEIFPPLLSGATLVLAPP--EVL------------RDPEALAELLREHRITVLHLVP-- 192

Query: 323 YDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFG 382
                                                        LL +L+ +    A  
Sbjct: 193 --------------------------------------------SLLRALLDALEPAALP 208

Query: 383 GRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTE---SCSGCFTSLADVFNMIGTVG 439
                ++ G A     V  +  +  GA L   YG TE     +       D+      +G
Sbjct: 209 SLRLVIVGGEALPAELVRRWRELFPGARLVNAYGPTETTVDVTYHEVDPDDLDGGSVPIG 268

Query: 440 VPMTTVEA-----RLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGW 494
            P+           L  VP         VP GE+ + G  +  GY  RP+LT E  V   
Sbjct: 269 RPIANTRVYVLDEDLRPVPVG-------VP-GELYIGGAGVARGYLNRPELTAERFVPDP 320

Query: 495 FH--------TGDIGEWQP 505
           F         TGD+  W P
Sbjct: 321 FGGPGERLYRTGDLARWLP 339

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445

>gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS)

 Score = 75.7 bits (187), Expect = 1e-14
 Identities = 64/303 (21%), Positives = 113/303 (37%), Gaps = 92/303 (30%)

Query: 222 ISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ 281
           ++  ++TSG+TG PK V+ T++ + A    + Q +        E      +LP  H +  
Sbjct: 166 VAKYLFTSGSTGLPKAVINTHRMLCANQAMIAQCWPFLT---EEPPVLVDWLPWNHTF-- 220

Query: 282 IIETHCIHKGCSIGF----WRGDVRYL-------------MEDIQELKPTMFSGVPRVYD 324
                    G +  F    + G   Y+             + +++E+ PT++  VP+ ++
Sbjct: 221 ---------GGNHNFNMVLYNGGTLYIDDGKPVPGLFEETLRNLREVSPTVYFNVPKGFE 271

Query: 325 RIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGR 384
                          L   L                 +  AA          +R  F  R
Sbjct: 272 --------------MLVDAL-----------------ERDAA----------LRRRFFKR 290

Query: 385 LQAMLSGAAPLPIHV----EEFLRVTSG--APLTQGYGLTESC-SGCFTSLADVFNMIGT 437
           L+ +    A LP  V    +     T+G   P+T G G TE+  +  F          G 
Sbjct: 291 LRLLFYAGAALPQDVWDRLQALAVRTTGERIPMTSGLGATETAPTATFVHWPTD--RSGV 348

Query: 438 VGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFH 496
           +G+P    E +L  VP  G        + E+ ++G  +  GY++ P+LT E    +G++ 
Sbjct: 349 IGLPAPGTELKL--VPNGG--------KLEVRVKGPNVTPGYWRDPELTAEAFDEEGFYR 398

Query: 497 TGD 499
            GD
Sbjct: 399 IGD 401

Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559

>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated

 Score = 75.8 bits (187), Expect = 2e-14
 Identities = 47/143 (32%), Positives = 59/143 (41%), Gaps = 21/143 (14%)

Query: 378 REAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTES---CSGCFT-------S 427
           R      + AM++GAAP P  V   +    G  LT  YGLTE+    + C          
Sbjct: 292 RAGIDHPVHAMVAGAAP-PAAVIAKME-EIGFDLTHVYGLTETYGPATVCAWQPEWDALP 349

Query: 428 LADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPR-----GEICLRGNTLFSGYYKR 482
           L +   +    GV     E     V  +  D +  VP      GEI  RGN +  GY K 
Sbjct: 350 LDERAQLKARQGVRYPLQEG----VTVLDPDTMQPVPADGETIGEIMFRGNIVMKGYLKN 405

Query: 483 PDLTEEVIVDGWFHTGDIGEWQP 505
           P  TEE    GWFHTGD+    P
Sbjct: 406 PKATEEAFAGGWFHTGDLAVLHP 428

Length = 545

>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 75.2 bits (185), Expect = 2e-14
 Identities = 77/286 (26%), Positives = 120/286 (41%), Gaps = 51/286 (17%)

Query: 221 NISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTG----KVCSE-EDTYFSFLPL 275
           +I+ + YT GTTG  KG +LT+  +VA +L V       G     +  E ++   + LPL
Sbjct: 208 DIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDGQPLMKEGQEVMIAPLPL 267

Query: 276 AHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKIS 335
            HIY       C+                          M SG   V       I+N   
Sbjct: 268 YHIYAFTANCMCM--------------------------MVSGNHNVL------ITNPRD 295

Query: 336 SGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPL 395
             G + K+L ++ ++  LG +          P    L FS         L+   SG   L
Sbjct: 296 IPGFI-KELGKWRFSALLG-LNTLFVALMDHPGFKDLDFS--------ALKLTNSGGTAL 345

Query: 396 PIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEM 455
                E     +G  + +GYGLTE+     T+       +GTVG+P+      L+ + + 
Sbjct: 346 VKATAERWEQLTGCTIVEGYGLTETSPVASTNPYGELARLGTVGIPV--PGTALKVIDDD 403

Query: 456 GYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGDI 500
           G + L    RGE+C++G  +  GY+++P+ T E +  +GWF TGDI
Sbjct: 404 G-NELPLGERGELCIKGPQVMKGYWQQPEATAEALDAEGWFKTGDI 448

Length = 562

>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain

 Score = 74.6 bits (184), Expect = 2e-14
 Identities = 44/200 (22%), Positives = 80/200 (40%), Gaps = 29/200 (14%)

Query: 79  TYQEVYDAAIRFGSAMRSR-GVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           TY+E+ + A R    +R+  GV PGDR  +      E ++A+ A       YVPL     
Sbjct: 1   TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYP 60

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
           A  + FI+  A   +       + S L+ L    + L  +   A   +      +     
Sbjct: 61  AERLAFILEDAGARLLLTDS-ALASRLAGLVLPVILLDPLELAALDDAPAPPPPDAPSGP 119

Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV 257
                                  +++ ++YTSG+TG PKGVV+T++++V  +  + + + 
Sbjct: 120 ----------------------DDLAYVIYTSGSTGRPKGVVVTHRSLVNLLAWLARRYG 157

Query: 258 VTGKVCSEEDTYFSFLPLAH 277
           +       +D    F  L+ 
Sbjct: 158 L-----DPDDRVLQFASLSF 172

This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409

>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated

 Score = 73.4 bits (181), Expect = 9e-14
 Identities = 46/174 (26%), Positives = 79/174 (45%), Gaps = 32/174 (18%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC-NSQAIT------YV 130
           LTY E+ + A R    + ++G+ PGD  GIY  N  E++ AM     ++A+       YV
Sbjct: 29  LTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKARAVPVNVNYRYV 88

Query: 131 P-----LYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSS 185
                 L D   A A+   +   E +       ++  +L  LP+    L+T+V   + S 
Sbjct: 89  EDELRYLLDDSDAVAL---VYEREFA------PRVAEVLPRLPK----LRTLVVVEDGS- 134

Query: 186 SQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVV 239
                  +L      +E+ L  G+ + +   +   ++  ++YT GTTG PKGV+
Sbjct: 135 -----GNDLLPGAVDYEDALAAGSPERDFGERSPDDL-YLLYTGGTTGMPKGVM 182

Length = 533

>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated

 Score = 70.7 bits (173), Expect = 5e-13
 Identities = 37/104 (35%), Positives = 51/104 (49%), Gaps = 4/104 (3%)

Query: 399 VEEFLRVTSGAPLTQGYGLTESCSG-CFTSLADVFNMIGTVGVPMTTVEARLESVPEMGY 457
           + +F RV + A     YGLTE+CSG            IG+ G  +  VE R+      G 
Sbjct: 281 IRDFTRVFTRARYIDAYGLTETCSGDTLMEAGREIEKIGSTGRALAHVEIRIAD--GAG- 337

Query: 458 DALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIG 501
             L    +GEIC+RG  +  GY+K P+ T E     WF +GD+G
Sbjct: 338 RWLPPNMKGEICMRGPKVTKGYWKDPEKTAEAFYGDWFRSGDVG 381

Length = 497

>gnl|CDD|140318 PTZ00297, PTZ00297, pantothenate kinase; Provisional

 Score = 71.0 bits (174), Expect = 8e-13
 Identities = 90/401 (22%), Positives = 152/401 (37%), Gaps = 52/401 (12%)

Query: 72  VGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVP 131
            G   WLTY  V   A   GS + + GV PGD  G+        +I   AC     T +P
Sbjct: 452 SGESEWLTYGTVDARARELGSGLLALGVRPGDVIGVDCEASRNIVILEVACALYGFTTLP 511

Query: 132 LYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKE- 190
           L      + +  +I+  ++ + F   N + +IL+C  R    L+T+V      S   ++ 
Sbjct: 512 LVGK--GSTMRTLIDEHKIKVVFADRNSVAAILTCRSR---KLETVV---YTHSFYDEDD 563

Query: 191 ---AEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIV- 246
              A +L ++   +E   Q G L      +  T  +   Y    T    G      A+V 
Sbjct: 564 HAVARDLNITLIPYEFVEQKGRLCPVPLKEHVTTDTVFTYVVDNTTSASG---DGLAVVR 620

Query: 247 ---AEVLSVDQMFVVTGKVCS--EEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDV 301
              A+VL      V+TG + S  ++     F P A +++++        G ++     D 
Sbjct: 621 VTHADVLRDISTLVMTGVLPSSFKKHLMVHFTPFAMLFNRVFVLGLFAHGSAVA--TVDA 678

Query: 302 RYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYK--LGNMKKG 359
            +L     + +PT+    P ++      +S       A+   LFE A+  +  L N+   
Sbjct: 679 AHLQRAFVKFQPTILVAAPSLFSTSRLQLSRANERYSAVYSWLFERAFQLRSRLINIH-- 736

Query: 360 MPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTE 419
               + + LL  + F   +E  GG               VE+ +   S    +  + L E
Sbjct: 737 ---RRDSSLLRFIFFRATQELLGGC--------------VEKIVLCVSEESTS--FSLLE 777

Query: 420 SCSGCFTS-LADVF--NMIGTV---GVPMTTVEARLESVPE 454
             S C+   L +VF     G     G P  +++  LE   E
Sbjct: 778 HISVCYVPCLREVFFLPSEGVFCVDGTPAPSLQVDLEPFDE 818

Length = 1452

>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1

 Score = 69.6 bits (170), Expect = 1e-12
 Identities = 84/324 (25%), Positives = 137/324 (42%), Gaps = 65/324 (20%)

Query: 192 EELGVSCFSWEEFLQLG-----TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIV 246
           EE      +W+E L+       T D E     +T++  + ++SGTTG  KGV+LT++ +V
Sbjct: 153 EEKIEGAVNWKELLEAADRAGDTSDNEE--ILQTDLCALPFSSGTTGISKGVMLTHRNLV 210

Query: 247 AEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCI---HKGCSIGFWRGDVRY 303
           A + S   +F V  ++  +  T    +P  HIY  I    C    +KG  +   R ++R 
Sbjct: 211 ANLCS--SLFSVGPEMIGQVVT-LGLIPFFHIYG-ITGICCATLRNKGKVVVMSRFELRT 266

Query: 304 LMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQN 363
            +  +   + +    VP +   I   + N                               
Sbjct: 267 FLNALITQEVSFAPIVPPI---ILNLVKN------------------------------- 292

Query: 364 KAAPLLDSLVFSKIREAFGGRLQAMLSGAAPL-PIHVEEFLRVTSGAPLTQGYGLTE-SC 421
              P+++    SK++      LQA+++ AAPL P  +  F     G  + + YGLTE SC
Sbjct: 293 ---PIVEEFDLSKLK------LQAIMTAAAPLAPELLTAFEAKFPGVQVQEAYGLTEHSC 343

Query: 422 SGCFTSLADVFNMIG---TVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSG 478
                   +  + I    +VG  +  +E +    P+ G     + P GE+C+R   +  G
Sbjct: 344 ITLTHGDPEKGHGIAKKNSVGFILPNLEVKFID-PDTGRSLPKNTP-GELCVRSQCVMQG 401

Query: 479 YYKRPDLTEEVI-VDGWFHTGDIG 501
           YY   + T+  I  DGW HTGDIG
Sbjct: 402 YYNNKEETDRTIDEDGWLHTGDIG 425

Length = 546

>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated

 Score = 68.9 bits (169), Expect = 2e-12
 Identities = 37/170 (21%), Positives = 67/170 (39%), Gaps = 12/170 (7%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           LTY ++ D   R+  A  + G+  GD   +   N PE ++A+ A     +    L+    
Sbjct: 38  LTYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIGAAQLAGLRRTALHPLGS 97

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
            +   +++  A +S   V           L      LK +++   V      +  +L   
Sbjct: 98  LDDHAYVLEDAGISTLIVDPAPFVERALALLARVPSLKHVLTLGPVP-----DGVDL--- 149

Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVA 247
                   + G            +I+ + YT GTTG+PKGV+ T+++I  
Sbjct: 150 ---LAAAAKFGPAPLV-AAALPPDIAGLAYTGGTTGKPKGVMGTHRSIAT 195

Length = 524

>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated

 Score = 68.9 bits (169), Expect = 2e-12
 Identities = 35/105 (33%), Positives = 49/105 (46%), Gaps = 18/105 (17%)

Query: 408 GAPLTQGYGLTESCSGCFTSLADVFN--------MIGTVGVPMTTVEARLESVPEMGYDA 459
           G  L Q +GL E  +G  T L    +         IGT G   T +E +++       D 
Sbjct: 305 GKVLVQYFGLGE-VTGNITVLPPALHDAEDGPDARIGTCGFERTGMEVQIQD------DE 357

Query: 460 LSSVP---RGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIG 501
              +P    GEIC+ G  +F+GYY  P+   +   DGWF TGD+G
Sbjct: 358 GRELPPGETGEICVIGPAVFAGYYNNPEANAKAFRDGWFRTGDLG 402

Length = 528

>gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed

 Score = 68.0 bits (167), Expect = 5e-12
 Identities = 33/133 (24%), Positives = 57/133 (42%), Gaps = 18/133 (13%)

Query: 378 REAFGGRLQAMLSGAAPLPIHV----EEFLRVTSGA--PLTQGYGLTESCSGCFTSLADV 431
           R  F  RL+ +    A L   V    +     T G    +  G G+TE+ +   T     
Sbjct: 329 RRRFFSRLKLLFYAGAALSQDVWDRLDRVAEATCGERIRMMTGLGMTET-APSATFTTGP 387

Query: 432 FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV 491
            +  G +G+P    E +L  VP  G        + E+ ++G  +  GY++ P+LT E   
Sbjct: 388 LSRAGNIGLPAPGCEVKL--VPVGG--------KLEVRVKGPNVTPGYWRAPELTAEAFD 437

Query: 492 D-GWFHTGDIGEW 503
           + G++ +GD   +
Sbjct: 438 EEGYYRSGDAVRF 450

Length = 614

>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA)

 Score = 66.9 bits (164), Expect = 8e-12
 Identities = 78/315 (24%), Positives = 128/315 (40%), Gaps = 80/315 (25%)

Query: 222 ISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ 281
           I+ I ++SG+TGEPKGV+LT++ ++  + +     ++     + ED + S++PL H    
Sbjct: 108 IAFIQFSSGSTGEPKGVILTHKNLLTNIEA-----IIEAAEITSEDVFLSWMPLTHDMGL 162

Query: 282 IIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVY-DRIYTGISNKISSGGAL 340
           I      H   +     G  +YLM         +F   P ++ D+     +  +SS    
Sbjct: 163 I----GFHLTPTA---LGINQYLM------PTRLFIRRPLLWLDKASQHRATILSSP--- 206

Query: 341 SKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHV- 399
                 F Y Y L + K     +      D    S +R  F        +GA P+   + 
Sbjct: 207 -----NFGYKYLLKHFKTEKIID-----WD---LSSVRLIF--------NGAEPISADLC 245

Query: 400 EEF--------LRVTSGAPLTQGYGLTESCSG-CFTSLADVFNMI----GTVGVPMTTVE 446
           EEF        LR  +   +   YGL E+     F    + F  +      + V +  +E
Sbjct: 246 EEFLEKMAPFGLRPNA---MYPVYGLAEATLAVSFPKPGEPFKTVCLDRNHLKVGVKIIE 302

Query: 447 ARLE-----SVPEMGY-----------DALSSVPR---GEICLRGNTLFSGYYKRPDLTE 487
              +     S  E+G            DA   +P    G I ++G+ + SGYY  P+ T+
Sbjct: 303 IDPKNSDAISFVEVGSPIDGCEIRIVDDAGEVLPDRTIGHIQIKGDNVTSGYYNNPEATK 362

Query: 488 EVIV-DGWFHTGDIG 501
           + I  DGW  TGD+G
Sbjct: 363 KSITPDGWLKTGDLG 377

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499

>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated

 Score = 66.3 bits (162), Expect = 1e-11
 Identities = 50/207 (24%), Positives = 85/207 (41%), Gaps = 15/207 (7%)

Query: 78  LTYQEVYDAAIRFGSAMRSR-GVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTL 136
            T+  +   A     A+    G+    R G    NC E +  + A       + PL   L
Sbjct: 39  TTFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVLFAVACMGAVFNPLNKQL 98

Query: 137 GANAVEFIINHAEVSIAFVQENKIPSILSCLPRC-CLYLKTIVSFANVSSSQKKEAEEL- 194
             + +  IINHAE  +          +   L  C C+     V F   S +    A    
Sbjct: 99  MNDQIVHIINHAEDEVIVADPRLAEQLGEILKECPCV---RAVVFIGPSDADSAAAHMPE 155

Query: 195 GVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLS--- 251
           G+  +S+E  L   +   + P   +T  + I Y++GTTG PKGVV +++++  + LS   
Sbjct: 156 GIKVYSYEALLDGRSTVYDWPELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRT 215

Query: 252 VDQMFVVTGKVCSEEDTYFSFLPLAHI 278
            D + V  G+      ++   +P+ H+
Sbjct: 216 TDSLAVTHGE------SFLCCVPIYHV 236

Length = 576

>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C)

 Score = 65.6 bits (161), Expect = 2e-11
 Identities = 41/169 (24%), Positives = 68/169 (40%), Gaps = 28/169 (16%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           LTY E+ + A R    +R+RGV PGD   +     PE ++A+ A       YVPL     
Sbjct: 13  LTYAELNERANRLARRLRARGVGPGDVVALLLERSPELVVAILAILKAGAAYVPLDPAYP 72

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
           A  + F++  +   +    E+  P                             A++L + 
Sbjct: 73  AERLAFMLEDSGARVLLTDESLAPLA--------------------------RADQLPLV 106

Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIV 246
               E   +        P     +++ +MYTSG+TG PKGV + ++ +V
Sbjct: 107 ILEEELDAEDA--GPPAPAVDADDLAYVMYTSGSTGRPKGVAVPHRGVV 153

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474

>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents

 Score = 65.0 bits (159), Expect = 4e-11
 Identities = 35/133 (26%), Positives = 57/133 (42%), Gaps = 31/133 (23%)

Query: 399 VEEFLRVTS--GAP---LTQGYGLTESCSGCF----------TSLADVFNMIGTVGVPMT 443
           +  FL + +  G P   +   +G++E+CSG            T    V ++ G +     
Sbjct: 306 IRRFLELLAPYGLPADAIRPAFGMSETCSGVTYSRGFRTGPDTGGVLVDSLTGPLRFAAA 365

Query: 444 TVEARLESVPEMGY-----------DALSSVPRGEIC---LRGNTLFSGYYKRPDLTEEV 489
                +  V E+G            +  + +P GE+    +RG T+ SGYY+ P+   E 
Sbjct: 366 DHPEAVTFV-ELGRPIPGVAIRIVDEDGALLPEGEVGRLQVRGPTVTSGYYRNPEANAEA 424

Query: 490 IV-DGWFHTGDIG 501
              DGWF TGD+G
Sbjct: 425 FTEDGWFRTGDLG 437

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560

>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated

 Score = 64.6 bits (158), Expect = 5e-11
 Identities = 38/121 (31%), Positives = 50/121 (41%), Gaps = 21/121 (17%)

Query: 391 GAAPLPIHV-EEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFN------MIGTVGVPMT 443
           GA+ +P+ V +E      G      YG TE        LA V          G+ G P+ 
Sbjct: 294 GASIMPVEVLKELRERLPGLRFYNCYGQTE-----IAPLATVLGPEEHLRRPGSAGRPVL 348

Query: 444 TVEARLESVPEMGYDALSSVPR---GEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDI 500
            VE R+        D  + V     GEI  R   L  GY+  P+ T E    GWFH+GD+
Sbjct: 349 NVETRVVD------DDGNDVAPGEVGEIVHRSPQLMLGYWDDPEKTAEAFRGGWFHSGDL 402

Query: 501 G 501
           G
Sbjct: 403 G 403

Length = 523

>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family

 Score = 64.1 bits (156), Expect = 6e-11
 Identities = 94/446 (21%), Positives = 164/446 (36%), Gaps = 76/446 (17%)

Query: 64  GRKVSDGKVGPYVW------LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWII 117
            R V +G+ G   +      L+Y E+     R G+A+R  GV   +R  +   +  ++ I
Sbjct: 11  DRNVVEGRGGKTAFIDDISSLSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPI 70

Query: 118 AMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTI 177
           A        I  V L   L A+   +++  +   + FV    +P I + L +   +L+  
Sbjct: 71  AFLGAIRAGIVPVALNTLLTADDYAYMLEDSRARVVFVSGELLPVIKAALGKSP-HLEHR 129

Query: 178 VSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKG 237
           V      + + + AE L       E+F        +    +  + +  +Y+SG+TG PKG
Sbjct: 130 VVVGRPEAGEVQLAELLATES---EQF--------KPAATQADDPAFWLYSSGSTGMPKG 178

Query: 238 VVLT--NQAIVAEVLSVDQMFVVTGKVC-SEEDTYFSF-LPLAHIYDQIIETHCIHKGCS 293
           VV T  N    AE+ + + + +    V  S    +F++ L  A  +   +    +  G  
Sbjct: 179 VVHTHSNPYWTAELYARNTLGIREDDVVFSAAKLFFAYGLGNALTFPMSVGATTVLMG-- 236

Query: 294 IGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKL 353
               R     + + ++  +PT+F GVP +Y                              
Sbjct: 237 ---ERPTPDAVFDRLRRHQPTIFYGVPTLY------------------------------ 263

Query: 354 GNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQ 413
                 M  +   P  D +           RL+   S    LP  V +  +   G  +  
Sbjct: 264 ----AAMLADPNLPAEDQV-----------RLRLCTSAGEALPAEVGQRWQARFGVDIVD 308

Query: 414 GYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGN 473
           G G TE      ++L       GT G P+     RL  V + G D  +  P GE+ + G 
Sbjct: 309 GIGSTEMLHIFLSNLPGDVRY-GTSGKPVPGYRLRL--VGDGGQDVAAGEP-GELLISGP 364

Query: 474 TLFSGYYKRPDLTEEVIVDGWFHTGD 499
           +  + Y+     T +     W  +GD
Sbjct: 365 SSATMYWNNRAKTRDTFQGEWTRSGD 390

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508

>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated

 Score = 64.3 bits (157), Expect = 7e-11
 Identities = 19/36 (52%), Positives = 25/36 (69%)

Query: 466 GEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIG 501
           GEI +R  +L  GY+ +P+ T E + DGW HTGDIG
Sbjct: 415 GEIVVRTPSLLKGYWNKPEATAEALRDGWLHTGDIG 450

Length = 567

>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated

 Score = 63.9 bits (156), Expect = 8e-11
 Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 18/126 (14%)

Query: 385 LQAMLSGAAPL-PIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNM------IGT 437
           L+ +  GA+P+ P+ + E +    G    Q YG TE      T L    +       + +
Sbjct: 283 LETVYYGASPMSPVRLAEAIERF-GPIFAQYYGQTE-APMVITYLRKRDHDPDDPKRLTS 340

Query: 438 VGVPMTTVEARLESVPEMGYDALSSVPR---GEICLRGNTLFSGYYKRPDLTEEVIVDGW 494
            G P   +   L        +    V +   GEIC+RG  +  GY+ RP+ T E   DGW
Sbjct: 341 CGRPTPGLRVALLD------EDGREVAQGEVGEICVRGPLVMDGYWNRPEETAEAFRDGW 394

Query: 495 FHTGDI 500
            HTGD+
Sbjct: 395 LHTGDV 400

Length = 524

>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE)

 Score = 64.3 bits (157), Expect = 8e-11
 Identities = 50/183 (27%), Positives = 77/183 (42%), Gaps = 32/183 (17%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
            TY E+YD   R    +R  GV  GDR  IY    PE +IAM AC      +  ++    
Sbjct: 74  YTYAELYDEVSRLAGVLRKLGVVKGDRVIIYMPMIPEAVIAMLACARIGAIHSVVFGGFA 133

Query: 138 ANAVEFIINHAE----VSIAF-VQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKK--- 189
           +  +   I+ A+    V+ +F ++  ++           +  K ++  A +  SQ K   
Sbjct: 134 SKELASRIDDAKPKLIVTASFGIEPGRV-----------VPYKPLLDKA-LELSQHKPHK 181

Query: 190 ---------EAEELGVSCFSWEEFL-QLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVV 239
                     A         W E + +   +DC   P + T+   I+YTSGTTG+PKGVV
Sbjct: 182 VLILNRGQVPAPLKPGRDLDWAELMAKARPVDCV--PVESTDPLYILYTSGTTGKPKGVV 239

Query: 240 LTN 242
              
Sbjct: 240 RDT 242

PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607

>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated

 Score = 63.3 bits (154), Expect = 1e-10
 Identities = 50/213 (23%), Positives = 78/213 (36%), Gaps = 39/213 (18%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
            T++E+ D       A+  RGV  GDR  I   N  E++ ++ A N      VP+   L 
Sbjct: 43  TTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLAANMLGAIAVPVNFRLT 102

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGV- 196
              + F+++     +   +                      + A V+++ +     L   
Sbjct: 103 PPEIAFLVSDCGAHVVVTEA---------------------ALAPVATAVRDIVPLLSTV 141

Query: 197 ---------SCFSWEEFLQLGTLDCELPPKKKTNIST--IMYTSGTTGEPKGVVLTNQAI 245
                    S   +E+   L        P    N S   IMYTSGTTG PKG VLT+  +
Sbjct: 142 VVAGGSSDDSVLGYED--LLAEAGPAHAPVDIPNDSPALIMYTSGTTGRPKGAVLTHANL 199

Query: 246 VAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHI 278
             + +      + T       D  F  +PL HI
Sbjct: 200 TGQAM----TCLRTNGADINSDVGFVGVPLFHI 228

Length = 542

>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score = 62.6 bits (153), Expect = 2e-10
 Identities = 34/136 (25%), Positives = 53/136 (38%), Gaps = 35/136 (25%)

Query: 391 GAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTV----- 445
           G+A     +E+      G  +   +G+TE+              +GTV      +     
Sbjct: 288 GSALPRSLIEKLEE--RGVEVIHAWGMTETSP------------LGTVSRLKPHLVDLPE 333

Query: 446 EARLESVPEMGY-----------DALSSVPR-----GEICLRGNTLFSGYYKRPDLTEEV 489
           E +LE   + G            D  + +P      GE+ +RG  +   YYK P+ TEE+
Sbjct: 334 EEKLELRAKQGRPVPGVELRIVDDEGNELPWDGKTVGELVVRGPWVTGSYYKDPEKTEEL 393

Query: 490 IVDGWFHTGDIGEWQP 505
             DGWF TGD+     
Sbjct: 394 TRDGWFRTGDVAVIDE 409

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517

>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated

 Score = 63.1 bits (154), Expect = 2e-10
 Identities = 47/206 (22%), Positives = 80/206 (38%), Gaps = 12/206 (5%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           +TY E+ + + RF + +R RGV  GDR  ++  NCP++ I           +VP+     
Sbjct: 59  ITYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFFGILKLGAVHVPVSPLFR 118

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
            + + + +N A   +    +   P +        L    + S A+V  ++        + 
Sbjct: 119 EHELSYELNDAGAEVLLALDQLAPVVEQVRAETSLRHVIVTSLADVLPAEPTLPLPDSLR 178

Query: 198 -----CFSWEEFLQL---GTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEV 249
                     + L      T    LPP     ++ + YT GTTG PKG   T + +V   
Sbjct: 179 APRLAAAGAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTA 238

Query: 250 LSVDQMFVVTGKVCSEEDTYFSFLPL 275
            +          V  E+  + SFLP 
Sbjct: 239 AA----AYAVAVVGGEDSVFLSFLPE 260

Length = 567

>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated

 Score = 62.9 bits (154), Expect = 2e-10
 Identities = 35/97 (36%), Positives = 51/97 (52%), Gaps = 13/97 (13%)

Query: 412 TQGYGLTESCSGCFTSLAD--VFNMIGTVGVPMTTVEARLESV-PEMGYDALSSVPR--- 465
           T  YG+TE+      +  D  +   + TVG  +  +E ++  V PE G     +VPR   
Sbjct: 345 TIAYGMTETSPVSTQTRTDDPLEKRVTTVGRALPHLEVKI--VDPETG----ETVPRGEQ 398

Query: 466 GEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGDIG 501
           GE+C RG ++  GY+  P+ T E I  DGW HTGD+ 
Sbjct: 399 GELCTRGYSVMKGYWNDPEKTAEAIDADGWMHTGDLA 435

Length = 559

>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated

 Score = 62.7 bits (153), Expect = 2e-10
 Identities = 48/202 (23%), Positives = 82/202 (40%), Gaps = 24/202 (11%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           L YQ +   A      + + G+ PGDR  +      +++ A  AC    +  VPL   +G
Sbjct: 50  LPYQTLRARAEAGARRLLALGLKPGDRVALIAETDGDFVEAFFACQYAGLVPVPLPLPMG 109

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
               E  I      +A           S  P   +    ++ + N ++          + 
Sbjct: 110 FGGRESYIAQLRGMLA-----------SAQPAAIITPDELLPWVNEATHGNP-----LLH 153

Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEV--LSVDQM 255
             S   F  L   D  LP     +I+ + Y+SG+T  P+GV++T++A++A +  +S D +
Sbjct: 154 VLSHAWFKALPEADVALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGL 213

Query: 256 FVVTGKVCSEEDTYFSFLPLAH 277
            V  G  C       S+LP  H
Sbjct: 214 KVRPGDRC------VSWLPFYH 229

Length = 579

>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes

 Score = 62.6 bits (153), Expect = 2e-10
 Identities = 40/182 (21%), Positives = 67/182 (36%), Gaps = 29/182 (15%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           LTY E+   A    +A+R+ GV PGD   +      E I+A+         YVP+     
Sbjct: 13  LTYGELARRANAIAAALRAAGVAPGDLVAVVMPKGWEQIVAVLGILLAGAAYVPIDPDQP 72

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
           A     I+  A                                        +  E   + 
Sbjct: 73  AERRAAILARAGARAVLTD----------------------------PGLAQPEEAPDLL 104

Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV 257
             + +            P     +++ +++TSG+TGEPKGV++T++A V  +L V++ F 
Sbjct: 105 VVADDAAAAESPAP-PPPRVDPDDLAYVIFTSGSTGEPKGVMITHRAAVNTILDVNRRFG 163

Query: 258 VT 259
           V 
Sbjct: 164 VG 165

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476

>gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS)

 Score = 62.2 bits (152), Expect = 3e-10
 Identities = 49/178 (27%), Positives = 70/178 (39%), Gaps = 25/178 (14%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           +++ E+     R  +A+R  GV PGDR   Y  N PE +IAM A  S    +       G
Sbjct: 87  ISWAELRSQVARLAAALRDLGVKPGDRVAGYLPNVPEAVIAMLATASIGAIWSSCSPDFG 146

Query: 138 ANAV--EFIINHAEVSIA----------FVQENKIPSILSCLPRCCLYLKTIVSFANVSS 185
             AV   F     +V  A            +  KI  I+  LP     L+ +V    +SS
Sbjct: 147 VEAVLDRFGQIEPKVLFAVDGYVYNGKEHDRREKIAEIVKGLPS----LEAVVVVPYLSS 202

Query: 186 SQKKEAEELGVSCFSWEEFLQLGTLDCELPPK-KKTNIST---IMYTSGTTGEPKGVV 239
                  +     FS    L     D   P + ++        I+Y+SGTTG PK +V
Sbjct: 203 -----DAQPAALKFSALTLLWSLAGDRAAPLEFERLPFDHPLWILYSSGTTGLPKCIV 255

AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616

>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated

 Score = 61.6 bits (150), Expect = 4e-10
 Identities = 45/172 (26%), Positives = 72/172 (41%), Gaps = 10/172 (5%)

Query: 70  GKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITY 129
           G V  Y   +Y E+ +   R  +   S G+  GD+  ++  NCPE+I             
Sbjct: 33  GVVRRY---SYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIM 89

Query: 130 VPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKK 189
           VP+   L      +I+ +++ S+        P            L+ I     ++     
Sbjct: 90  VPINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQEDATPLRHIC----LTRVALP 145

Query: 190 EAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLT 241
             +  GVS F+  +  Q  TL C  PP    + + I++TSGTT  PKGVV+T
Sbjct: 146 ADD--GVSSFTQLKAQQPATL-CYAPPLSTDDTAEILFTSGTTSRPKGVVIT 194

Length = 517

>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated

 Score = 61.4 bits (149), Expect = 4e-10
 Identities = 41/147 (27%), Positives = 64/147 (43%), Gaps = 13/147 (8%)

Query: 365 AAPLLDSLVFSKIREAFGGRLQAML----SGAAPLPIHVEEFLRVTSGAPLTQGYGLTES 420
           A P +  ++  +      GR  A L    S +APL     + L+    AP+   +G+TE+
Sbjct: 273 AVPTIHQILLERAATEPSGRKPAALRFIRSCSAPLTAETAQALQTEFAAPVVCAFGMTEA 332

Query: 421 CSGCFTSLADVF----NMIGTVGVPMTTVEARLESVPEMGYDALSSVPR--GEICLRGNT 474
                T+  +      N + + G+   +  A++  V   G D L       GE+ LRG T
Sbjct: 333 THQVTTTQIEGIGQTENPVVSTGLVGRSTGAQIRIV---GSDGLPLPAGAVGEVWLRGTT 389

Query: 475 LFSGYYKRPDLTEEVIVDGWFHTGDIG 501
           +  GY   P +T     DGW  TGD+G
Sbjct: 390 VVRGYLGDPTITAANFTDGWLRTGDLG 416

Length = 534

>gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional

 Score = 61.6 bits (150), Expect = 5e-10
 Identities = 63/304 (20%), Positives = 112/304 (36%), Gaps = 95/304 (31%)

Query: 225 IMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIE 284
            ++TSG+TG PK V+ T Q ++   +++ Q  +   +          ++P  H       
Sbjct: 225 YLFTSGSTGMPKAVINT-QRMMCANIAM-QEQLRPREPDPPPPVSLDWMPWNHTM----- 277

Query: 285 THCIHKGCSIGF----WRGDVRYL-------------MEDIQELKPTMFSGVPRVYDRIY 327
                 G +  F    W G   Y+             + +++E+ PT++  VP  Y    
Sbjct: 278 ------GGNANFNGLLWGGGTLYIDDGKPLPGMFEETIRNLREISPTVYGNVPAGY---- 327

Query: 328 TGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQA 387
                       L++                 M ++ A           +R +F   L+ 
Sbjct: 328 ----------AMLAE----------------AMEKDDA-----------LRRSFFKNLRL 350

Query: 388 MLSGAAPLPIHVEEFLRV----TSGA--PLTQGYGLTESCSGCFTSLADVFNMIGTVGVP 441
           M  G A L   + E ++     T+G   P   GYG TE+ +   T        +G +G+P
Sbjct: 351 MAYGGATLSDDLYERMQALAVRTTGHRIPFYTGYGATET-APTTTGTHWDTERVGLIGLP 409

Query: 442 MTTVEARLESVPEMGYDALSSVPRG---EICLRGNTLFSGYYKRPDLTEEVI-VDGWFHT 497
           +  VE +L              P G   E+ ++G  +  GY+K P+LT      +G++  
Sbjct: 410 LPGVELKL-------------APVGDKYEVRVKGPNVTPGYHKDPELTAAAFDEEGFYRL 456

Query: 498 GDIG 501
           GD  
Sbjct: 457 GDAA 460

Length = 624

>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated

 Score = 61.1 bits (149), Expect = 6e-10
 Identities = 49/219 (22%), Positives = 90/219 (41%), Gaps = 29/219 (13%)

Query: 78  LTYQEVYDAAIRF-GSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC-NSQAITYVPLYDT 135
           ++Y+E+ + A R  G   +  GV  GDR  +Y  N P+++IA  A   + A+  VP+   
Sbjct: 36  ISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAILRANAVV-VPVNPM 94

Query: 136 LGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFAN---------VSSS 186
                +   +  +   +A V     P +   +    L    +  +++         V + 
Sbjct: 95  NREEELAHYVTDSGARVAIVGSELAPKVAPAVGNLRLRHVIVAQYSDYLPAEPEIAVPAW 154

Query: 187 QKKEAEELGVSCF---SWEEFLQLGTLDCELPPKKKT----NISTIMYTSGTTGEPKGVV 239
            + E     ++     +W+E      L   L P   T    +++ + YTSGTTG PKG +
Sbjct: 155 LRAEPPLQALAPGGVVAWKE-----ALAAGLAPPPHTAGPDDLAVLPYTSGTTGVPKGCM 209

Query: 240 LTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHI 278
            T++ ++A  +        T      E    + LPL H+
Sbjct: 210 HTHRTVMANAVGSVLWSNSTP-----ESVVLAVLPLFHV 243

Length = 546

>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain

 Score = 60.7 bits (148), Expect = 7e-10
 Identities = 35/140 (25%), Positives = 53/140 (37%), Gaps = 25/140 (17%)

Query: 384 RLQAMLSGAAPLPI-HVEEFLRVTSGAPLTQGYGLTESCSGC-FTSL----ADVFNMIGT 437
            L+ ++ G   L    V+ +     GA L   YG TE+      T +    A   + +  
Sbjct: 236 SLRLVILGGEALTPALVDRWRARGPGARLINLYGPTETTVWSTATLVDPDDAPRESPV-P 294

Query: 438 VGVPMTTVEARLESVPEMGYDALSSVPR---GEICLRGNTLFSGYYKRPDLTEEVIVDGW 494
           +G P+      +        D L  VP    GE+ + G  +  GY  RP+LT E  V   
Sbjct: 295 IGRPLANTRLYVLD------DDLRPVPVGVVGELYIGGPGVARGYLNRPELTAERFVPDP 348

Query: 495 F---------HTGDIGEWQP 505
           F          TGD+  + P
Sbjct: 349 FAGGDGARLYRTGDLVRYLP 368

This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409

>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated

 Score = 61.0 bits (149), Expect = 7e-10
 Identities = 49/199 (24%), Positives = 78/199 (39%), Gaps = 47/199 (23%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYV---PLYD 134
            TY+E  +        + + G+  GDR GI+  N PEW++   A        V   P Y 
Sbjct: 44  WTYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLTQFATAKIGAILVTINPAYR 103

Query: 135 TLGANAVEFIINHAEVS-------------IAFVQENKIPSILSCLPRCCL-----YLKT 176
               + +E+ +N +                +A + E   P + +C P          L+ 
Sbjct: 104 L---SELEYALNQSGCKALIAADGFKDSDYVAMLYE-LAPELATCEPGQLQSARLPELRR 159

Query: 177 IVSFANVSSSQKKEAEELGVSCFSWEEFLQLGT--LDCELPPKKKT-------NISTIMY 227
           ++             +E      +++E L LG    D EL  ++ T       NI    Y
Sbjct: 160 VIFL----------GDEKHPGMLNFDELLALGRAVDDAELAARQATLDPDDPINIQ---Y 206

Query: 228 TSGTTGEPKGVVLTNQAIV 246
           TSGTTG PKG  LT++ I+
Sbjct: 207 TSGTTGFPKGATLTHRNIL 225

Length = 559

>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated

 Score = 60.6 bits (147), Expect = 8e-10
 Identities = 41/125 (32%), Positives = 58/125 (46%), Gaps = 17/125 (13%)

Query: 384 RLQAMLSGAAPLPIHVEEFLRVTS----GAPLTQGYGLTE-SCSGCFTSLADVFNMIGTV 438
            L+ +  GAAP     +  LR  +     A +   +G TE S   C     D    +G+V
Sbjct: 291 ALRVLSWGAAPAS---DTLLRQMAATFPEAQILAAFGQTEMSPVTCMLLGEDAIRKLGSV 347

Query: 439 GVPMTTVEARLESVPEMGYDALSSVPRG---EICLRGNTLFSGYYKRPDLTEEVIVDGWF 495
           G  + TV AR+        + ++ VP G   EI  R  TL SGY+  P+ T E    GWF
Sbjct: 348 GKVIPTVAARVVD------ENMNDVPVGEVGEIVYRAPTLMSGYWNNPEATAEAFAGGWF 401

Query: 496 HTGDI 500
           H+GD+
Sbjct: 402 HSGDL 406

Length = 542

>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated

 Score = 60.0 bits (146), Expect = 1e-09
 Identities = 45/174 (25%), Positives = 66/174 (37%), Gaps = 24/174 (13%)

Query: 76  VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWI-----IAMEACNSQAITYV 130
              T+ E Y    R  SA+  RG+  GD   +   N P  +     + M       +   
Sbjct: 42  RRRTWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFGVPMAGAVLNTLNT- 100

Query: 131 PLYDTLGANAVEFIINHAEVSIAFVQENKIPSI---LSCLPRCCLYLKTIVSFANVSSSQ 187
                L A ++ F++ H E  +  V           L+ LP      K +V   +V   +
Sbjct: 101 ----RLDAASIAFMLRHGEAKVLIVDTEFAEVAREALALLPG----PKPLV--IDVDDPE 150

Query: 188 KKEAEELGVSCFSWEEFLQLG--TLDCELPPKKKTNISTIMYTSGTTGEPKGVV 239
                 +G     +E FL  G       LP  +   I+ + YTSGTTG PKGVV
Sbjct: 151 YPGGRFIGA--LDYEAFLASGDPDFAWTLPADEWDAIA-LNYTSGTTGNPKGVV 201

Length = 545

>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like

 Score = 60.5 bits (147), Expect = 1e-09
 Identities = 93/459 (20%), Positives = 157/459 (34%), Gaps = 118/459 (25%)

Query: 79  TYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGA 138
           T+ ++ D + +  +  ++ G+  GD   +      E+  +M A +      +P    L A
Sbjct: 49  TFGDLKDYSNKAANFFKALGIGKGDTVMLTLKRRYEFWFSMLALHKIGAIAIPATHMLTA 108

Query: 139 NAVEFIINHAEVS-IAFVQENKIP-SILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGV 196
             + + I  A +  I  + E+ +P  I    P C      ++    V     +       
Sbjct: 109 KDIVYRIEAAGIKMIVCIGEDGVPEHIDEAAPECGSPTLLVL----VGDPVPE------- 157

Query: 197 SCFSWEEFLQLGTLDC--ELPP------KKKTNISTIMYTSGTTGEPKGVVLTNQAIVAE 248
               W +F +    +   +             +I  + +TSGTTG PK        +V  
Sbjct: 158 ---GWIDFDK-EIENASPDFERPTGNDATCNDDILLVYFTSGTTGMPK--------MVEH 205

Query: 249 VLSVDQMFVVTGKV--CSEE--------DTYFSFLPLAHIYDQIIETHCIHKGCSI---G 295
             +     +VT K     +E        DT +       +Y Q I       G ++    
Sbjct: 206 DHTYPLGHIVTAKYWQNVKEGGLHLTVADTGWGKAVWGKLYGQWI------AGAAVFVYD 259

Query: 296 FWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGN 355
           + + D + L+E I++   T F   P +Y R    I   +S             Y+     
Sbjct: 260 YDKFDPKNLLEKIEKYGVTTFCAPPTIY-RFL--IKEDLSK------------YD----- 299

Query: 356 MKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGY 415
                              S +R           +G    P     F   T G  L +G+
Sbjct: 300 ------------------LSSLRYC-------TTAGEPLNPEVFNTFKEKT-GIKLMEGF 333

Query: 416 GLTESCSGCFTSLADVFNMI---GTVGVPMTTVEARLESVPEMGYDALSSVP--RGEICL 470
           G TE       ++A    M    G++G P    +  +     +  D  S      GEI +
Sbjct: 334 GQTE----TTLTIATFPWMEPKPGSMGKPSPGYDIDI-----IDPDGKSCEVGEEGEIVI 384

Query: 471 RGNT-----LFSGYYKRPDLTEEVIVDGWFHTGDIGEWQ 504
           R +      LF GYY+ P+ T EV  DG++HTGD   W 
Sbjct: 385 RTSDGKPLGLFMGYYRDPERTAEVWHDGYYHTGDTA-WM 422

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537

>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)

 Score = 60.3 bits (147), Expect = 1e-09
 Identities = 44/204 (21%), Positives = 81/204 (39%), Gaps = 31/204 (15%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           LTY E+   A    + +++ G  PGDR  +      +++ A   C         LY    
Sbjct: 24  LTYAELDRRARAIAARLQALG-APGDRVLLLAPPGLDFVAAFFGC---------LY---- 69

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSIL-SCLPRCCLYLKTIVSFANVSSSQKKEAEELGV 196
           A A+             +   ++ +IL     R       +++ + V ++ +        
Sbjct: 70  AGAIAVPAPPPRRLGRHLA--RLAAILADAGAR------AVLTTSAVLAALRAALAAPAA 121

Query: 197 SCFSW---EEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVD 253
                   ++   L   D   PP    +I+ + YTSG+TG PKGV++T+  ++A   ++ 
Sbjct: 122 LLLLLIAADDLAALAAADWRPPPPDPDDIAFLQYTSGSTGAPKGVMVTHGNLLA---NLR 178

Query: 254 QMFVVTGKVCSEEDTYFSFLPLAH 277
            +    G     +D   S+LPL H
Sbjct: 179 AIARAFG--LDPDDVGVSWLPLYH 200

FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547

>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed

 Score = 60.5 bits (147), Expect = 1e-09
 Identities = 40/122 (32%), Positives = 56/122 (45%), Gaps = 11/122 (9%)

Query: 384 RLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFN-MIGTVGVPM 442
            L+  L   AP+P  + E  R   GA +   +G+TE+ +   T L D       T G P+
Sbjct: 313 SLRTFLCAGAPIPGALVERARAALGAKIVSAWGMTENGAVTLTKLDDPDERASTTDGCPL 372

Query: 443 TTVEARLESVPEMGYDALSSVPRGEI---CLRGNTLFSGYYKRPDLTEEVIVDGWFHTGD 499
             VE R+           + +P G+I    +RG + F GY KRP L      DGWF TGD
Sbjct: 373 PGVEVRVVD------ADGAPLPAGQIGRLQVRGCSNFGGYLKRPQLN-GTDADGWFDTGD 425

Query: 500 IG 501
           + 
Sbjct: 426 LA 427

Length = 547

>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 60.0 bits (146), Expect = 1e-09
 Identities = 42/200 (21%), Positives = 72/200 (36%), Gaps = 40/200 (20%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           L+YQ+++         +R+ GV    R  +   N  +W+IA  AC    I  +P+     
Sbjct: 3   LSYQQLWQEVDLLAEQLRALGVK---RIALALDNSIDWVIADLACLQAGIVCIPIPHFFS 59

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKE-AEELGV 196
           A   + ++N A                            ++S    ++S        LG 
Sbjct: 60  AQQTQHLLNDAGAD------------------------LLISDDPDAASALHTPFATLGE 95

Query: 197 SCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMF 256
             +               P +     + I YTSG+TG+PKGV L+  A+     S+ +  
Sbjct: 96  DLYIA-------LRPSANPVELPAGTAKITYTSGSTGQPKGVCLSAAALETVAQSLAEAI 148

Query: 257 VVTGKVCSEEDTYFSFLPLA 276
            +      E + +   LPLA
Sbjct: 149 AIL-----EPERHLCLLPLA 163

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448

>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated

 Score = 59.6 bits (145), Expect = 2e-09
 Identities = 39/118 (33%), Positives = 62/118 (52%), Gaps = 13/118 (11%)

Query: 391 GAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLE 450
           G A +P  V E L+  +G    +GYGLTE+ +   ++  D   +   +G+P   V+AR+ 
Sbjct: 313 GGAAMPEAVAERLKELTGLDYVEGYGLTETMAQTHSNPPDRPKL-QCLGIPTFGVDARV- 370

Query: 451 SVPEMGYDALSSVPR---GEICLRGNTLFSGYYKRPDLTEEVIV--DG--WFHTGDIG 501
               +  + L  +P    GEI + G  +F GY+ RP+ T E  +  DG  +F TGD+G
Sbjct: 371 ----IDPETLEELPPGEVGEIVVHGPQVFKGYWNRPEATAEAFIEIDGKRFFRTGDLG 424

Length = 546

>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 58.9 bits (143), Expect = 3e-09
 Identities = 59/299 (19%), Positives = 98/299 (32%), Gaps = 83/299 (27%)

Query: 222 ISTIMYTSGTTGEPKGVVLTNQAIVAEV--------LSVDQMFVVTGKVCSEEDTYFSFL 273
            + + +TSGTTG PK V+ T+   +  +        L  D +          +  + S  
Sbjct: 83  PALLYFTSGTTGLPKMVLHTHSYPLGHLVTGAYWLDLRPDDLHWTIADPGWAKGAWSSLF 142

Query: 274 -PLAHIYDQIIETHCIHKGCSIGFWRG---DVRYLMEDIQELKPTMFSGVPRVYDRIYTG 329
            P                G ++  + G   D    +E ++    T F   P  Y  +   
Sbjct: 143 APWLL-------------GAAVFVYHGRRFDAERTLELLERYGVTTFCAPPTAYRML--- 186

Query: 330 ISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAML 389
                                     +++ +             FS +R          +
Sbjct: 187 --------------------------LQQDLSSYD---------FSHLRHV--------V 203

Query: 390 SGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMI--GTVGVPMTTVEA 447
           S   PL   V ++ R  +G P+  GYG TE+              +  G++G P      
Sbjct: 204 SAGEPLNPEVIDWWRAATGLPIRDGYGQTETGLLVANFPG---MEVKPGSMGRPAPGY-- 258

Query: 448 RLESVPEMGYDALSSVPRGEICL----RGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGE 502
           R+  + + G + L     G+I +    R   LF GY K P+ TE  I   W+ TGD   
Sbjct: 259 RVAIIDDEG-NELPPGEEGDIAVRVKPRPPGLFRGYLKDPEKTEATIRGDWYLTGDRAI 316

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430

>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 58.3 bits (142), Expect = 4e-09
 Identities = 36/99 (36%), Positives = 44/99 (44%), Gaps = 25/99 (25%)

Query: 414 GYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGN 473
           GYGLTE  S      AD    +  VG P+   E +L                GEI LRG 
Sbjct: 270 GYGLTEMASTVCAKRAD---GLAGVGSPLPGREVKLVD--------------GEIWLRGA 312

Query: 474 TLFSGYYK----RPDLTEEVIVDGWFHTGDIGEWQPMEL 508
           +L  GY++     P L  +   +GWF T D GEWQ  EL
Sbjct: 313 SLALGYWRQGQLVP-LVND---EGWFATRDRGEWQNGEL 347

Length = 458

>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 57.4 bits (139), Expect = 8e-09
 Identities = 34/128 (26%), Positives = 55/128 (42%), Gaps = 7/128 (5%)

Query: 378 REAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNM-IG 436
           R  +  RL+A+ SG   L   + E+ R   G  + + YG TE  +    + A +     G
Sbjct: 202 RARYDLRLRAVASGGESLGEELLEWARDELGLTVNEFYGQTE-ANLVVGNCAALGPARPG 260

Query: 437 TVGVPMTTVEARLESVPEMGYDALSSVPRGEICL-RGN-TLFSGYYKRPDLTEEVIVDGW 494
           ++G P+      +  V + G         GEI + R +  +F GY+  P+ T       W
Sbjct: 261 SMGKPVPG--HEVAVVDDAGRPVPPGE-VGEIAVKRPDPVMFLGYWNNPEATAAKFAGDW 317

Query: 495 FHTGDIGE 502
             TGD+G 
Sbjct: 318 LLTGDLGR 325

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439

>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed

 Score = 57.4 bits (139), Expect = 9e-09
 Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 14/123 (11%)

Query: 385 LQAMLSGAAPLPIH-VEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFN-MIGTVGVPM 442
           L+  L G   +P     E  +   G  L   YG TES      +L D  +  + T G   
Sbjct: 304 LRFFLCGGTTIPKKVARECQQ--RGIKLLSVYGSTESSPHAVVNLDDPLSRFMHTDGYAA 361

Query: 443 TTVEARLESVPEMGYDALSSVPRG---EICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTG 498
             VE ++        +A  ++P G   E   RG  +F GY   P+LT   +  +GW+++G
Sbjct: 362 AGVEIKVVD------EARKTLPPGCEGEEASRGPNVFMGYLDEPELTARALDEEGWYYSG 415

Query: 499 DIG 501
           D+ 
Sbjct: 416 DLC 418

Length = 547

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 56.8 bits (138), Expect = 1e-08
 Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 7/60 (11%)

Query: 220 TNISTIMYTSGTTGEPKGVVLTN-QAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHI 278
            + + I+YTSGTTG PKGV+LT+ Q + A  L+   +          +D   + LPL HI
Sbjct: 81  VDTAAILYTSGTTGPPKGVLLTHAQLLFAARLAARLL------GLRPDDVLLTPLPLFHI 134

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase)

 Score = 56.5 bits (137), Expect = 2e-08
 Identities = 24/78 (30%), Positives = 34/78 (43%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           LTY E+ DAA R  +A+   GV PGD       N  E+++   AC        P+     
Sbjct: 2   LTYGELDDAADRLAAALAELGVRPGDVVAFQLPNWWEFVVVYLACARIGAVINPIVPIYR 61

Query: 138 ANAVEFIINHAEVSIAFV 155
              + FI+  A   + FV
Sbjct: 62  ERELGFILRQARARVLFV 79

Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437

>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional

 Score = 56.3 bits (136), Expect = 2e-08
 Identities = 65/251 (25%), Positives = 102/251 (40%), Gaps = 36/251 (14%)

Query: 41  GLESPWQFFC----DSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRS 96
           GL   W   C    D A RI  N+ +  R V     GP V  TY +++D A++   A+  
Sbjct: 3   GLMQDWPLLCHRIIDHAARIHGNREVVTRSVE----GPIVRTTYAQIHDRALKVSQALDR 58

Query: 97  RGVNPGDRCGIYGSNCPE----WIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSI 152
            G+  GDR      N       W   M      AI +  +   L    + +IINHAE  +
Sbjct: 59  DGIKLGDRVATIAWNTWRHLEAWYGIM---GIGAICHT-VNPRLFPEQIAWIINHAEDRV 114

Query: 153 AFVQENKIP---SILSCLPRCCLYLKTIVSF---ANVSSSQKKEAEELGVSCFSWEEFLQ 206
                  +P    I   LP     ++  V     A++  +  K A        ++EE++ 
Sbjct: 115 VITDLTFVPILEKIADKLPS----VERYVVLTDAAHMPQTTLKNA-------VAYEEWIA 163

Query: 207 LGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEE 266
               D       +   + + YTSGTTG+PKGV+ ++++ V   L  +    + G   +  
Sbjct: 164 EADGDFAWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDAL-GTSAA-- 220

Query: 267 DTYFSFLPLAH 277
           DT    +PL H
Sbjct: 221 DTMLPVVPLFH 231

Length = 542

>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 55.9 bits (135), Expect = 2e-08
 Identities = 42/171 (24%), Positives = 62/171 (36%), Gaps = 57/171 (33%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDR-CGIYGSNCPEWIIAMEACNSQAITYVPLYDTL 136
           L+Y E+ + + R  + +   GV PGDR  G+     PE ++A+ A       YVPL+   
Sbjct: 1   LSYAELREQSARVANLLADLGVKPGDRVAGLLPRT-PELVVAILATWRVGAIYVPLFTAF 59

Query: 137 GANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGV 196
           G  A+E+ + H+                             V   N +            
Sbjct: 60  GPKAIEYRLGHSG--------------------------AKVVVTNAA------------ 81

Query: 197 SCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVA 247
                      G LD         ++   MYTSGTTG PKGV +   A+ A
Sbjct: 82  ---------NRGKLD--------DDLFAQMYTSGTTGLPKGVPVPLNALAA 115

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440

>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes

 Score = 55.4 bits (134), Expect = 3e-08
 Identities = 25/72 (34%), Positives = 39/72 (54%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           LTY+E++D A RF + +R+ GV+PGDR  +   + PE + A  AC       V L   L 
Sbjct: 11  LTYRELHDLANRFANVLRALGVSPGDRVLLLLPDSPELVAAFLACLKAGAVAVALNPLLT 70

Query: 138 ANAVEFIINHAE 149
              +E I++ + 
Sbjct: 71  PQDLEHILDDSG 82

This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 55.7 bits (135), Expect = 3e-08
 Identities = 24/84 (28%), Positives = 38/84 (45%)

Query: 77  WLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTL 136
             TY E+ +   R  + + + GV PGDR  +   NCPE++ A  A N      VP+   L
Sbjct: 3   RYTYAELAERVNRLAAGLLALGVRPGDRVALMLDNCPEFLRAWFALNKLGAVAVPINTAL 62

Query: 137 GANAVEFIINHAEVSIAFVQENKI 160
               +  I++H+   +  V    I
Sbjct: 63  RGEELAHILDHSGARLIVVDTAAI 86

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated

 Score = 55.2 bits (133), Expect = 4e-08
 Identities = 81/303 (26%), Positives = 115/303 (37%), Gaps = 82/303 (27%)

Query: 217 KKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLA 276
           K   +++ I++TSGT   PKGV LT+  ++A   +  + F        E+D   SFLP  
Sbjct: 180 KDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFFSPK-----EDDVMMSFLPPF 234

Query: 277 HIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISS 336
           H Y               GF          +   L P + SGVP V+           + 
Sbjct: 235 HAY---------------GF----------NSCTLFP-LLSGVPVVF-----------AY 257

Query: 337 GGALSKKLFEFA--------------YNYKLGNMKKGMPQNKAAPLLDSLVFSKIR-EAF 381
                KK+ E                ++Y L   KK   Q      L SL F  I  +AF
Sbjct: 258 NPLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKK---QESC---LPSLRFVVIGGDAF 311

Query: 382 GGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFT-SLADVFNMIGTVGV 440
              L              +E L+      L QGYG TE CS   T +  +       VG+
Sbjct: 312 KDSLY-------------QEALKTFPHIQLRQGYGTTE-CSPVITINTVNSPKHESCVGM 357

Query: 441 PMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDG--WFHTG 498
           P+  ++  +  V E     +SS   G +  RG +LFSGY         V + G  W+ TG
Sbjct: 358 PIRGMDVLI--VSEETKVPVSSGETGLVLTRGTSLFSGYLGEDFGQGFVELGGETWYVTG 415

Query: 499 DIG 501
           D+G
Sbjct: 416 DLG 418

Length = 539

>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS)

 Score = 54.9 bits (133), Expect = 5e-08
 Identities = 19/78 (24%), Positives = 36/78 (46%)

Query: 77  WLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTL 136
            LTY E+   + R   A+ + G+ PGDR  +      E+++   A        VPL  + 
Sbjct: 11  SLTYGELDARSGRLAKALLALGLLPGDRVAVLAPKSAEYVVLYLAIWRAGGVAVPLNPSY 70

Query: 137 GANAVEFIINHAEVSIAF 154
            A  + +I++ ++ S+  
Sbjct: 71  PAAELAYILSDSQPSLLV 88

MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430

>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase

 Score = 55.3 bits (133), Expect = 5e-08
 Identities = 36/120 (30%), Positives = 52/120 (43%), Gaps = 11/120 (9%)

Query: 385 LQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTV-GVPMT 443
           L   L   AP+P  + E      GA +   +G+TE+ +   T   D      T  G P+ 
Sbjct: 312 LFTFLCAGAPIPGILVERAWELLGALIVSAWGMTENGAVTVTEPDDALEKASTTDGRPLP 371

Query: 444 TVEARLESVPEMGYDALSSVPRGEI---CLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDI 500
            VE ++         A   + +GE     +RG + F GY KRP L      +GWF TGD+
Sbjct: 372 GVEVKVID----ANGA--KLSQGETGRLLVRGCSNFGGYLKRPHLN-STDAEGWFDTGDL 424

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 54.8 bits (132), Expect = 9e-08
 Identities = 45/200 (22%), Positives = 79/200 (39%), Gaps = 33/200 (16%)

Query: 47  QFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCG 106
           Q     A++ P    L    V   +V     L+Y E+   A R    + + GV P    G
Sbjct: 516 QLIEAQARQHPERPAL----VFGEQV-----LSYAELNRQANRLAHVLIAAGVGPDVLVG 566

Query: 107 IYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSC 166
           I      E ++ + A       YVPL      + + ++++ + V +   Q      +L+ 
Sbjct: 567 IAVERSIEMVVGLLAVLKAGGAYVPLDPEYPQDRLAYMLDDSGVRLLLTQ----SHLLAQ 622

Query: 167 LPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIM 226
           LP            A + S    E  +L         +      +  L P    N++ ++
Sbjct: 623 LPVP----------AGLRSLCLDEPADL------LCGYSGHNP-EVALDPD---NLAYVI 662

Query: 227 YTSGTTGEPKGVVLTNQAIV 246
           YTSG+TG+PKGV +++ A+ 
Sbjct: 663 YTSGSTGQPKGVAISHGALA 682

Length = 3956

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 55.0 bits (132), Expect = 1e-07
 Identities = 78/425 (18%), Positives = 131/425 (30%), Gaps = 89/425 (20%)

Query: 78   LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
            L+Y E+   A R    +  RGV P    G+      E ++ + A       YVPL     
Sbjct: 3083 LSYAELNRRANRLAHRLIERGVGPDVLVGVAVERSLEMVVGLLAILKAGGAYVPLDPEYP 3142

Query: 138  ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
               + +++  +   +   Q +    +   +    L                +  E     
Sbjct: 3143 EERLAYMLEDSGAQLLLSQSHLRLPLAQGVQVLDL---------------DRGDENYA-- 3185

Query: 198  CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV 257
                E    + T+          N++ ++YTSG+TG+PKGV + + A+   +  + Q + 
Sbjct: 3186 ----EANPAIRTM--------PENLAYVIYTSGSTGKPKGVGIRHSALSNHLCWMQQAYG 3233

Query: 258  VTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFS 317
            +       + T FSF                                    +EL   + S
Sbjct: 3234 LGVGDRVLQFTTFSFDVFV--------------------------------EELFWPLMS 3261

Query: 318  GVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKI 377
            G   V                     L     N +  ++    P    A L +       
Sbjct: 3262 GARVVLA----------GPEDWRDPALLVELINSEGVDVLHAYPSMLQAFLEEEDAHR-- 3309

Query: 378  REAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESC-SGCFTSLADVFNMIG 436
                    + +  G A      +   +V +G PL   YG TE+  +       +      
Sbjct: 3310 ---CTSLKRIVCGGEALPA---DLQQQVFAGLPLYNLYGPTEATITVTHWQCVEEGKDAV 3363

Query: 437  TVGVPMTTVEARLESVPEMGYDALSSVPRG---EICLRGNTLFSGYYKRPDLTEEVIVDG 493
             +G P+      +         +L  VP G   E+ L G  L  GY+ RP LT E  V  
Sbjct: 3364 PIGRPIANRACYILD------GSLEPVPVGALGELYLGGEGLARGYHNRPGLTAERFVPD 3417

Query: 494  WFHTG 498
             F  G
Sbjct: 3418 PFVPG 3422

Length = 5163

>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA)

 Score = 53.7 bits (130), Expect = 1e-07
 Identities = 25/131 (19%), Positives = 39/131 (29%), Gaps = 32/131 (24%)

Query: 394 PLPI-HVEEFLRVTSGAPLTQGYGLTESCSGC------------FTSLADVFNMIGTV-- 438
            LP    +   R    A +   YG TE+                   L      IG    
Sbjct: 225 VLPKKLAKALRRRFPNARIINLYGPTEATVAVTAYEVTPEPLSRNEPLP-----IGYPKP 279

Query: 439 GVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVD----GW 494
           G+    ++     VP            GE+ + G  +  GY   P+ T +         W
Sbjct: 280 GLRALILDEDGRPVPP--------GEEGELVIAGPQVSPGYLNNPEKTAKAFFQDEGQRW 331

Query: 495 FHTGDIGEWQP 505
           + TGD+   + 
Sbjct: 332 YRTGDLVYLED 342

DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447

>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA)

 Score = 53.7 bits (130), Expect = 1e-07
 Identities = 24/87 (27%), Positives = 38/87 (43%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           LTY E+ + A R  + + + G   GD   +YG   P+   A+ AC      YVPL  +  
Sbjct: 17  LTYAELKERADRLAARLLALGGRAGDPVAVYGHKSPDAYAAILACLKAGAAYVPLDPSQP 76

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSIL 164
           A  +  I+  A  +      + +  IL
Sbjct: 77  AERIAKILEAAGPAALVADPDDLAYIL 103

DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447

>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated

 Score = 53.5 bits (129), Expect = 2e-07
 Identities = 34/109 (31%), Positives = 48/109 (44%), Gaps = 29/109 (26%)

Query: 408 GAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESV--PEMGYDA------ 459
           G  L   YG+TE+             ++G +G      + R  S+  P   Y+A      
Sbjct: 312 GVRLLTSYGMTET-------------IVGIIGDRPGD-KRRWPSIGRPGFCYEAEIRDDH 357

Query: 460 ---LSSVPRGEICLRG---NTLFSGYYKRPDLTEEVI-VDGWFHTGDIG 501
              L +   GEIC++G    T+F  YY  P  T +V+  DGW HTGD G
Sbjct: 358 NRPLPAGEIGEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTGDTG 406

Length = 517

>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 53.1 bits (128), Expect = 2e-07
 Identities = 28/87 (32%), Positives = 41/87 (47%)

Query: 79  TYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGA 138
           T+ ++ DA+ R  +A+R  GV  GDR G+Y    PE  IA  A        VPL    G 
Sbjct: 8   TFGQLKDASNRLANALRELGVERGDRVGVYLPQSPETAIAHLAVYKLGAVSVPLSVLFGP 67

Query: 139 NAVEFIINHAEVSIAFVQENKIPSILS 165
           +AVE  +  +   +     +  P+IL 
Sbjct: 68  DAVEHRLRDSGARVLVTDGSDDPAILI 94

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439

>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional

 Score = 53.6 bits (129), Expect = 2e-07
 Identities = 36/121 (29%), Positives = 51/121 (42%), Gaps = 10/121 (8%)

Query: 382 GGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVP 441
             R++  L    P  +H     R   G  L  GYG TE+      +        G++G  
Sbjct: 293 AHRVRVALGPGVPAALHAAFRERF--GVDLLDGYGSTETNFVIAVTHGS--QRPGSMGRL 348

Query: 442 MTTVEARLESVPEMGYDALSSVPRGEICLRGNTLF---SGYYKRPDLTEEVIVDGWFHTG 498
               EAR+  V E   +     P GE+ LR +  F   +GY+  P+ T E   + WFHTG
Sbjct: 349 APGFEARV--VDEHDQELPDGEP-GELLLRADEPFAFATGYFGMPEKTVEAWRNLWFHTG 405

Query: 499 D 499
           D
Sbjct: 406 D 406

Length = 542

>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional

 Score = 53.2 bits (128), Expect = 2e-07
 Identities = 44/203 (21%), Positives = 74/203 (36%), Gaps = 16/203 (7%)

Query: 77  WLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTL 136
             TY E   AA     A+ + GV  GDR  +   N  E++     C       VP+   L
Sbjct: 46  RWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDVFLGCAWLGAIAVPINTAL 105

Query: 137 GANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGV 196
               +E I+ ++   +  V+   + ++ +  P   L L  +      +S           
Sbjct: 106 RGPQLEHILRNSGARLLVVEAALLAALEAADPGD-LPLPAVWLLDAPASVSVPAG----- 159

Query: 197 SCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTN-QAIVAEVLSVDQM 255
             +S      L         +   + + I+YTSGTTG  KGV   + Q       S + +
Sbjct: 160 --WSTAPLPPLDAPAPAAAVQP-GDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDL 216

Query: 256 FVVTGKVCSEEDTYFSFLPLAHI 278
            +        +D  ++ LPL H 
Sbjct: 217 EIG------ADDVLYTTLPLFHT 233

Length = 542

>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

 Score = 53.8 bits (130), Expect = 2e-07
 Identities = 41/130 (31%), Positives = 58/130 (44%), Gaps = 23/130 (17%)

Query: 389  LSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADV---------FNMIGTVG 439
            ++GA  L   V +      G  + +GYG TE+      +L DV          +  G+VG
Sbjct: 904  VAGAEKLKPEVADAFEEKFGIRILEGYGATETSPVASVNLPDVLAADFKRQTGSKEGSVG 963

Query: 440  VPMTTVEARLESV-PEMGYDALSSVPRGE---ICLRGNTLFSGYYKRPDLTEEVIVD--- 492
            +P+  V  R+  V PE        +P GE   I + G  +  GY   P+ T EVI D   
Sbjct: 964  MPLPGVAVRI--VDPE----TFEELPPGEDGLILIGGPQVMKGYLGDPEKTAEVIKDIDG 1017

Query: 493  -GWFHTGDIG 501
             GW+ TGD G
Sbjct: 1018 IGWYVTGDKG 1027

Length = 1146

>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated

 Score = 53.4 bits (129), Expect = 2e-07
 Identities = 42/205 (20%), Positives = 75/205 (36%), Gaps = 23/205 (11%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           +TY E+   + R    +R+ G+  GD   I   N PE+     A     + Y P+   L 
Sbjct: 12  VTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLT 71

Query: 138 ANAVEFIINHAEVSIAFVQENKIPS---ILSCLPRCCLYLKTIVSFANVSSSQKKEAEEL 194
           A  + +I++ +   +  V      +   + + LP     L  +             A  +
Sbjct: 72  AAEIAYIVDDSGAKVLIVSAALADTAAELAAELPAGVPLLLVV-------------AGPV 118

Query: 195 GVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVV--LTNQAIVAEVLSV 252
                 +  + +      + P   +T  + ++Y+SGTTG PKG+   L       E   +
Sbjct: 119 P----GFRSYEEALAAQPDTPIADETAGADMLYSSGTTGRPKGIKRPLPGLDP-DEAPGM 173

Query: 253 DQMFVVTGKVCSEEDTYFSFLPLAH 277
               +  G     +  Y S  PL H
Sbjct: 174 MLALLGFGMYGGPDSVYLSPAPLYH 198

Length = 502

>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed

 Score = 52.4 bits (126), Expect = 3e-07
 Identities = 50/207 (24%), Positives = 82/207 (39%), Gaps = 26/207 (12%)

Query: 79  TYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGA 138
           TY  +  AA R  + + ++G+ PGDR         E+ I   AC       VPL  +   
Sbjct: 51  TYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLACLKVGAVSVPLLPSWRE 110

Query: 139 NAVEFIIN--HAEVSIA---FVQENKIPSILSC---LPRCCLYLKTIVSFANVSSSQKKE 190
             + +++N   A++  A   F Q   +  IL     LP     L+ IV          K 
Sbjct: 111 AELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQNQLP----QLQQIVGV-------DKL 159

Query: 191 AEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVL 250
           A     S  S  + +                ++ +++TSGT G PKGV+LT+  I+A   
Sbjct: 160 APAT--SSLSLSQIIADYEPLTTAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILAS-- 215

Query: 251 SVDQMFVVTGKVCSEEDTYFSFLPLAH 277
             ++ +     +   +D +    PL H
Sbjct: 216 --ERAYCARLNLTW-QDVFMMPAPLGH 239

Length = 547

>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

 Score = 52.6 bits (127), Expect = 3e-07
 Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 5/64 (7%)

Query: 214 LPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFL 273
            P  K  + +TI+++SG+ GEPKGV+L++  I++ +  +  +F +       +D   S L
Sbjct: 776 GPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVFNLR-----NDDVILSSL 830

Query: 274 PLAH 277
           P  H
Sbjct: 831 PFFH 834

Length = 1146

>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional

 Score = 53.0 bits (128), Expect = 3e-07
 Identities = 39/175 (22%), Positives = 77/175 (44%), Gaps = 21/175 (12%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPE-WIIAMEACNSQAITYVPLYDTL 136
            TY+E+ + + +F + ++  GV  GDR  I+    PE +   + A  + AI   PL++  
Sbjct: 74  YTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFALLGALKNGAI-VGPLFEAF 132

Query: 137 GANAVEFIINHAE----VSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAE 192
              AV   +  +E    ++   + E K    L  L       K ++           E  
Sbjct: 133 MEEAVRDRLEDSEAKVLITTPALLERKPADDLPSL-------KHVLLVG--------EDV 177

Query: 193 ELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVA 247
           E G     +   ++  + + ++    + + + + YTSG+TG+PKGV+  + A++ 
Sbjct: 178 EEGPGTLDFNALMEQASDEFDIEWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQ 232

Length = 570

>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C)

 Score = 52.2 bits (126), Expect = 4e-07
 Identities = 49/160 (30%), Positives = 67/160 (41%), Gaps = 34/160 (21%)

Query: 366 APLLDSLVFSKIREAFGGRLQAMLSG--AAPLPIHVEEFLRVTSGAPLTQGYGLTE---- 419
           A L + LV  +  EA  G L+ +L G        HV   L    G  L  GYG TE    
Sbjct: 225 AALFNQLV-DEDPEALAG-LRQLLVGGDVLSPA-HVRRVLAACPGLRLINGYGPTENTTF 281

Query: 420 SCSGCFTSLADVFNMIGTV--GVPM--TTV---EARLESVPEMGYDALSSVPRGEICLRG 472
           S   C   +  +     ++  G P+  TTV   +   + VP         VP GE+ + G
Sbjct: 282 ST--CH-VITRLDEAADSIPIGRPIPNTTVYILDEEGQPVPI-------GVP-GELYVGG 330

Query: 473 NTLFSGYYKRPDLTEEVIVD-----G--WFHTGDIGEWQP 505
           + L  GY  RP+LT E  V      G   + TGD+  W+P
Sbjct: 331 DGLALGYLNRPELTAERFVPDPFGPGERLYRTGDLARWRP 370

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474

>gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional

 Score = 52.5 bits (127), Expect = 4e-07
 Identities = 20/45 (44%), Positives = 28/45 (62%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC 122
           +TY+E++    RF +A++S GV  GDR  IY    PE  +AM AC
Sbjct: 99  ITYRELHREVCRFANALKSLGVKKGDRVAIYMPMIPEAAVAMLAC 143

Length = 637

>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents

 Score = 51.9 bits (125), Expect = 5e-07
 Identities = 52/227 (22%), Positives = 90/227 (39%), Gaps = 31/227 (13%)

Query: 73  GPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPL 132
           G   + +Y E+ + A R  + +R+ G+ PGD   +      +++ A  AC       VP+
Sbjct: 35  GSEEFQSYAELLEEAERILAGLRALGLKPGDSVILQLERNEDFVTAFWACVLGGFVPVPV 94

Query: 133 YDTLGANAVEFIINHAEVSIAFVQENKIPSILSCL--PRCCLYLKTIVSFANVSSSQK-- 188
                        N A          K+ +I   L  P        +   A V++     
Sbjct: 95  ----AVPPTYDEPNAAV--------AKLRNIWELLGSPVI------LTDAALVAALAGLR 136

Query: 189 KEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAE 248
             A    +   + EE       D  L P +  + + ++ TSG+TG PK VVLT++ I+A 
Sbjct: 137 TRAGLEALRVLAIEELRSAPP-DAPLHPARPDDPALLLLTSGSTGVPKCVVLTHRNILAR 195

Query: 249 VLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETH--CIHKGCS 293
                Q+   T      +D   +++PL H+   I+  H   ++ GC 
Sbjct: 196 SAGTVQVNGFT-----PDDVSLNWMPLDHV-GGIVMLHLRDVYLGCQ 236

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 52.3 bits (125), Expect = 5e-07
 Identities = 92/446 (20%), Positives = 149/446 (33%), Gaps = 99/446 (22%)

Query: 78   LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
            LTY E+   A R   A+ +RGV P    GI      E ++ + A       YVPL     
Sbjct: 4577 LTYAELNRRANRLAHALIARGVGPEVLVGIAMERSAEMMVGLLAVLKAGGAYVPLDPEYP 4636

Query: 138  ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
               + +++  +  ++   Q +    +L  LP              ++S      E+    
Sbjct: 4637 RERLAYMMEDSGAALLLTQSH----LLQRLP----------IPDGLASLALDRDED---- 4678

Query: 198  CFSWEEFLQLGTLDCELPPKKKT---NISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQ 254
               WE F           P  +    N++ ++YTSG+TG PKGV +++ ++V  + +  +
Sbjct: 4679 ---WEGF-------PAHDPAVRLHPDNLAYVIYTSGSTGRPKGVAVSHGSLVNHLHATGE 4728

Query: 255  MFVVTGKVCSEEDTYFSF-LPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKP 313
             + +T      +   FSF      +Y  +I    +        W  D   L  +I E + 
Sbjct: 4729 RYELTPDDRVLQFMSFSFDGSHEGLYHPLINGASVVIRDD-SLW--DPERLYAEIHEHRV 4785

Query: 314  TMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLV 373
            T+    P                            Y  +L        ++   P L    
Sbjct: 4786 TVLVFPP---------------------------VYLQQLAE---HAERDGEPPSLRVYC 4815

Query: 374  FSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFN 433
            F    EA       +   A                  L  GYG TE+        A   +
Sbjct: 4816 FGG--EAVAQASYDLAWRALK-------------PVYLFNGYGPTETTVTVLLWKARDGD 4860

Query: 434  MIGTVGVPMTTVEARLESVPEMGY---DALSSVP---RGEICLRGNTLFSGYYKRPDLTE 487
              G   +P+ T           GY     L+ +P    GE+ L G  +  GY +RP LT 
Sbjct: 4861 ACGAAYMPIGTPLGNRS-----GYVLDGQLNPLPVGVAGELYLGGEGVARGYLERPALTA 4915

Query: 488  EVIVDGWF--------HTGDIGEWQP 505
            E  V   F         TGD+  ++ 
Sbjct: 4916 ERFVPDPFGAPGGRLYRTGDLARYRA 4941

Length = 5163

>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional

 Score = 51.6 bits (123), Expect = 6e-07
 Identities = 38/140 (27%), Positives = 59/140 (42%), Gaps = 25/140 (17%)

Query: 383 GRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGC-FTSLADVFNMI------ 435
           G +  +  G+ P    V++  R+  G  +   YGLTE+     F    D +N +      
Sbjct: 301 GPVHVLTGGSPPPAALVKKVQRL--GFQVMHAYGLTEATGPVLFCEWQDEWNRLPENQQM 358

Query: 436 ------GTVGVPMTTVEAR----LESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDL 485
                 G   + +  V+ +     ESVP  G         GEI ++G+++  GY K P  
Sbjct: 359 ELKARQGVSILGLADVDVKNKETQESVPRDGKTM------GEIVIKGSSIMKGYLKNPKA 412

Query: 486 TEEVIVDGWFHTGDIGEWQP 505
           T E    GW +TGD+G   P
Sbjct: 413 TSEAFKHGWLNTGDVGVIHP 432

Length = 579

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 51.9 bits (124), Expect = 7e-07
 Identities = 42/183 (22%), Positives = 70/183 (38%), Gaps = 32/183 (17%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           L Y E+   A R   A+  RGV P    G+      E ++A+ A       YVPL     
Sbjct: 537 LDYAELNRRANRLAHALIERGVGPDVLVGVAMERSIEMVVALLAILKAGGAYVPLDPEYP 596

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
           A  + +++  + V +   Q +        LP                      A  + V 
Sbjct: 597 AERLAYMLEDSGVQLLLSQSHLGRK----LPL---------------------AAGVQVL 631

Query: 198 CF----SWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVD 253
                 +W E         EL P+   N++ ++YTSG+TG+PKG    ++A+   +  + 
Sbjct: 632 DLDRPAAWLEGYSEENPGTELNPE---NLAYVIYTSGSTGKPKGAGNRHRALSNRLCWMQ 688

Query: 254 QMF 256
           Q +
Sbjct: 689 QAY 691

Length = 5163

>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase

 Score = 50.8 bits (122), Expect = 8e-07
 Identities = 21/78 (26%), Positives = 36/78 (46%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           +TY E+ +   R    ++ +GV  GDR  +Y  N P+++IA  A        VP+     
Sbjct: 2   ITYAELLELVDRLAGLLQEKGVRKGDRVALYMQNSPQFVIAYYAILRAGAVVVPVNPMNR 61

Query: 138 ANAVEFIINHAEVSIAFV 155
              +E I+N +   +  V
Sbjct: 62  EAELEHILNDSGARVLIV 79

The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 51.5 bits (123), Expect = 9e-07
 Identities = 49/201 (24%), Positives = 83/201 (41%), Gaps = 37/201 (18%)

Query: 78   LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
            L+Y E+   A R    +R+RGV P  R  I      E ++A+ A       YVPL D   
Sbjct: 2029 LSYAELDSRANRLAHRLRARGVGPEVRVAIAAERSFELVVALLAVLKAGGAYVPL-D--- 2084

Query: 138  ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEEL--- 194
                    N+    +A++ E+                    S A +  +Q+   E L   
Sbjct: 2085 -------PNYPAERLAYMLED--------------------SGAALLLTQRHLLERLPLP 2117

Query: 195  -GVSCFSWEEFLQLGTLDCELPPKK--KTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLS 251
             GV+    +   +        P  +    N++ ++YTSG+TG PKGV +++ A+VA   +
Sbjct: 2118 AGVARLPLDRDAEWADYPDTAPAVQLAGENLAYVIYTSGSTGLPKGVAVSHGALVAHCQA 2177

Query: 252  VDQMFVVTGKVCSEEDTYFSF 272
              + + ++   C  +   FSF
Sbjct: 2178 AGERYELSPADCELQFMSFSF 2198

Length = 5163

>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase

 Score = 50.6 bits (122), Expect = 1e-06
 Identities = 42/135 (31%), Positives = 56/135 (41%), Gaps = 30/135 (22%)

Query: 388 MLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTE----SCSGCFTSLADVFNMIGTVGVPM- 442
            L G   LP  + E L  T GA L   YG TE    S     T+         T+G P+ 
Sbjct: 211 ALCGGEALPRDLAERLLST-GAELWNMYGPTETTIWSTCARVTAADGP----VTIGRPIA 265

Query: 443 -TTV---EARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDG----- 493
            T V   +  L+ VP         VP GE+ + G+ +  GY  RP+LT E  V       
Sbjct: 266 NTQVYVLDEDLQPVPP-------GVP-GELYIGGDGVARGYLGRPELTAERFVPDPFDDP 317

Query: 494 ---WFHTGDIGEWQP 505
               + TGD+  W+P
Sbjct: 318 GGRLYRTGDLVRWRP 332

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438

>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase

 Score = 50.3 bits (121), Expect = 1e-06
 Identities = 20/76 (26%), Positives = 40/76 (52%)

Query: 77  WLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTL 136
            L+Y E+ + + +  + +R+ GV PGDR G+      + + A+ A       YVPL  + 
Sbjct: 12  TLSYAELDERSNQLAARLRALGVGPGDRVGVLLERSADLVAALLAILKAGAAYVPLDPSY 71

Query: 137 GANAVEFIINHAEVSI 152
            A  +++++  AE ++
Sbjct: 72  PAERLQYMLEDAEPAL 87

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438

>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated

 Score = 50.1 bits (120), Expect = 2e-06
 Identities = 59/253 (23%), Positives = 103/253 (40%), Gaps = 23/253 (9%)

Query: 79  TYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACN-SQAITYVPLYDTLG 137
           TY++    A +   A+ + GV PGDR G    N    + A    + S A+ +  +   L 
Sbjct: 41  TYRDCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYYGVSGSGAVCHT-INPRLF 99

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
              + +I+NHAE          +P + +  P+C      +  +  ++ +    A    + 
Sbjct: 100 PEQIAYIVNHAEDRYVLFDLTFLPLVDALAPQC----PNVKGWVAMTDAAHLPAGSTPLL 155

Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIV----AEVLSVD 253
           C+  E  +     D + P   +   S++ YTSGTTG PKG + ++++ V       L  D
Sbjct: 156 CY--ETLVGAQDGDYDWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALP-D 212

Query: 254 QMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG---DVRYLMEDIQE 310
            M        S  D     +P+ H+    +       G  +    G   D + L E I+ 
Sbjct: 213 AM------GLSARDAVLPVVPMFHVNAWGLPYSAPLTGAKLVL-PGPDLDGKSLYELIEA 265

Query: 311 LKPTMFSGVPRVY 323
            + T  +GVP V+
Sbjct: 266 ERVTFSAGVPTVW 278

Length = 539

>gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1

 Score = 49.4 bits (118), Expect = 3e-06
 Identities = 34/161 (21%), Positives = 61/161 (37%), Gaps = 27/161 (16%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           LTYQ++ + + R  + ++ R +       +YG   P  ++A          Y+P+  ++ 
Sbjct: 26  LTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSIKSGHAYIPVDTSIP 85

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
           +  +E II  A      +   ++                      ++ S  ++AE  G  
Sbjct: 86  SERIEMIIEAAGPE-LVIHTAELSIDAVGTQI-------------ITLSALEQAETSG-- 129

Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGV 238
                     G +  +   K   N   I YTSG+TG PKGV
Sbjct: 130 ----------GPVSFDHAVKGDDNYYII-YTSGSTGNPKGV 159

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502

>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase

 Score = 49.2 bits (118), Expect = 3e-06
 Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 3/89 (3%)

Query: 69  DGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAIT 128
           DG V  +   TY E+     R  S + + G+  GDR GIY    PE ++A+ A       
Sbjct: 2   DGSVRTW---TYSELAREVNRLASGLAALGLGKGDRVGIYMPMIPEAVVALLAIAKIGAI 58

Query: 129 YVPLYDTLGANAVEFIINHAEVSIAFVQE 157
            VP++   G +AV   +  AE  +    +
Sbjct: 59  AVPIFSGFGPDAVATRLQDAEAKVLITAD 87

This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474

>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated

 Score = 49.4 bits (118), Expect = 3e-06
 Identities = 47/182 (25%), Positives = 65/182 (35%), Gaps = 29/182 (15%)

Query: 347 FAYNYKLGNMKKG-----MPQNKAAPLLDSLVFSKIREAFGG-----RLQAMLSGAAPLP 396
           F ++  LG +  G      P   AA    +L   ++   FG      R+       A  P
Sbjct: 235 FGFSTLLGALAGGAPLVCEPVFDAARTARALRRHRVTHTFGNDEMLRRILDTAGERADFP 294

Query: 397 IHVEEF--------------LRVTSGAPLTQGYGLTE--SCSGCFTSLADVFNMIGTVGV 440
                F              L    G PLT  YG +E  +      +   V   I   G 
Sbjct: 295 -SARLFGFASFAPALGELAALARARGVPLTGLYGSSEVQALVALQPATDPVSVRIEGGGR 353

Query: 441 PMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV-DGWFHTGD 499
           P +  EAR+ +        L     GEI +R  +L  GY   PD T   +  DG+F TGD
Sbjct: 354 PASP-EARVRARDPQDGALLPDGESGEIEIRAPSLMRGYLDNPDATARALTDDGYFRTGD 412

Query: 500 IG 501
           +G
Sbjct: 413 LG 414

Length = 540

>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 48.5 bits (116), Expect = 4e-06
 Identities = 15/71 (21%), Positives = 29/71 (40%)

Query: 79  TYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGA 138
           T+ E+ + + R  + ++  GV  GDR  +     PE    +  C      ++P    LG 
Sbjct: 2   TFAELKEESDRAANFLKDLGVGRGDRVAVLLPRVPELWAVILGCIKLGAVFIPGTTQLGP 61

Query: 139 NAVEFIINHAE 149
             + + +  A 
Sbjct: 62  KDIRYRLERAG 72

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430

>gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

 Score = 48.4 bits (116), Expect = 6e-06
 Identities = 33/161 (20%), Positives = 57/161 (35%), Gaps = 27/161 (16%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           LTY ++ + +    + + S  +       ++G   PE +            Y+P+  +  
Sbjct: 28  LTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPEMLATFLGAVKAGHAYIPVDVSSP 87

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
           A  +E II  A+ S+    E     IL            +++   +              
Sbjct: 88  AERIEMIIEVAKPSLIIATEELPLEILGI---------PVITLDELK------------- 125

Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGV 238
               + F      D +   K   N   I +TSGTTG+PKGV
Sbjct: 126 ----DIFATGNPYDFDHAVKGDDNYYII-FTSGTTGKPKGV 161

Length = 503

>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase

 Score = 48.6 bits (116), Expect = 6e-06
 Identities = 67/294 (22%), Positives = 107/294 (36%), Gaps = 57/294 (19%)

Query: 221 NISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVC----SEEDTYFSFLPLA 276
           +   I +TSGTTG PKGV +++ A++ + L+         K+      E+D Y    PL 
Sbjct: 173 DAVLICFTSGTTGRPKGVTISHSALIVQSLA---------KIAIVGYGEDDVYLHTAPLC 223

Query: 277 HIYD-QIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVY-DRIYTGISNKI 334
           HI          +   C +   + D +  ++ I++   T    VP +  D I     +  
Sbjct: 224 HIGGLSSALAMLMVGACHVLLPKFDAKAALQAIKQHNVTSMITVPAMMADLISLTRKSMT 283

Query: 335 SSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVF----SKIREAFGGRLQAMLS 390
                  +K+          N    +     + LL         +K+  A+G  +    S
Sbjct: 284 WKVFPSVRKIL---------NGGGSLS----SRLLPDAKKLFPNAKLFSAYG--MTEACS 328

Query: 391 GAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTV--GVPMTTVEAR 448
               + +H      + S     Q    T+S            +    V  G P   VE +
Sbjct: 329 SLTFMTLHDP---TLESPKQTLQTVNQTKS---------SSVHQPQGVCVGKPAPHVELK 376

Query: 449 LESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV-DGWFHTGDIG 501
           +      G D  S V  G I  RG  +  GY+ +   T  V+  DGW  TGDIG
Sbjct: 377 I------GLDESSRV--GRILTRGPHVMLGYWGQNSETASVLSNDGWLDTGDIG 422

Length = 563

>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional

 Score = 48.4 bits (116), Expect = 7e-06
 Identities = 32/94 (34%), Positives = 45/94 (47%), Gaps = 19/94 (20%)

Query: 413  QGYGLTESCSG--CFTSLADVFNMIGTVGVPMTTVEARLESVP--EMGYDALSSVPRGEI 468
            +GYG+TE+       T +    N  GTVG  +  +E RLE VP  + G         G +
Sbjct: 937  EGYGVTETAPVIALNTPM---HNKAGTVGRLLPGIEYRLEPVPGIDEG---------GRL 984

Query: 469  CLRGNTLFSGYYK--RPDLTEEVIVDGWFHTGDI 500
             +RG  +  GY +   P + E    DGW+ TGDI
Sbjct: 985  FVRGPNVMLGYLRAENPGVLEP-PADGWYDTGDI 1017

Length = 1140

>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)

 Score = 48.0 bits (115), Expect = 8e-06
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 7/43 (16%)

Query: 466 GEICLRGNTLFSGYYKRPDLTEEVI-------VDGWFHTGDIG 501
           GEI +RG ++ +GY+ RP+ T E           GW  TGD+G
Sbjct: 383 GEIWVRGPSVAAGYWNRPEATAETFGARLATDEGGWLRTGDLG 425

FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547

>gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase

 Score = 48.0 bits (115), Expect = 8e-06
 Identities = 20/45 (44%), Positives = 27/45 (60%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC 122
           +TY+E++    RF + ++S GV  GDR  IY    PE  IAM AC
Sbjct: 89  ITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAMLAC 133

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625

>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme)

 Score = 47.5 bits (114), Expect = 1e-05
 Identities = 21/45 (46%), Positives = 27/45 (60%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC 122
           +TY+E+Y    RF + ++S GV  GDR  IY    PE  IAM AC
Sbjct: 79  ITYRELYREVCRFANVLKSLGVKKGDRVAIYMPMIPELPIAMLAC 123

Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602

>gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 35/122 (28%), Positives = 48/122 (39%), Gaps = 33/122 (27%)

Query: 384 RLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMT 443
            L A+L G  P P  V +     +G  + + YG++E+  GC      V++     GVP+ 
Sbjct: 152 ELDAVLVGGGPAPAPVLD-AAAAAGINVVRTYGMSETSGGC------VYD-----GVPLD 199

Query: 444 TVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYY---KRPDLTEEVIVDGWFHTGDI 500
            V  R+E               G I L G TL  GY          E     GWF T D+
Sbjct: 200 GVRVRVED--------------GRIALGGPTLAKGYRNPVDPDPFAEP----GWFRTDDL 241

Query: 501 GE 502
           G 
Sbjct: 242 GA 243

Length = 358

>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated

 Score = 46.8 bits (112), Expect = 2e-05
 Identities = 99/445 (22%), Positives = 153/445 (34%), Gaps = 105/445 (23%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           LTY E+ + +      + + GV  GD   +   N   +++A+ A   +    + L +T G
Sbjct: 75  LTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAAG-KVGARIILLNT-G 132

Query: 138 ANAVEFIINHAEVSI-----AFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAE 192
            +  +     AEV+      A V +++   +LS LP     L+                +
Sbjct: 133 FSGPQL----AEVAAREGVKALVYDDEFTDLLSALPPDLGRLRAWGG----------NPD 178

Query: 193 ELGVSCFSWEEFLQL-GTLDCELPPKKKTNISTIMYTSGTTGEPKGVV---LTNQAIVAE 248
           +   S  + E    L         PK       ++ TSGTTG PKG      +  A +A 
Sbjct: 179 DDEPSGSTDETLDDLIAGSSTAPLPKPPKPGGIVILTSGTTGTPKGAPRPEPSPLAPLAG 238

Query: 249 VLS-----VDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG-DVR 302
           +LS       +  ++   +       F     AH+   +        G ++   R  D  
Sbjct: 239 LLSRVPFRAGETTLLPAPM-------FHATGWAHL--TLAMAL----GSTVVLRRRFDPE 285

Query: 303 YLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQ 362
             +EDI + K T    VP +  RI                          LG      P+
Sbjct: 286 ATLEDIAKHKATALVVVPVMLSRI------------------------LDLG------PE 315

Query: 363 NKAAPLLDSL--VFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTES 420
             A     SL  +F       G  L   L+  A     +E F     G  L   YG TE 
Sbjct: 316 VLAKYDTSSLKIIFVS-----GSALSPELATRA-----LEAF-----GPVLYNLYGSTEV 360

Query: 421 CSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSS-VPRGE---ICLRGNTLF 476
                 +  D+    GTVG P   V  ++        D   + VPRG    I +     F
Sbjct: 361 AFATIATPEDLAEAPGTVGRPPKGVTVKI-------LDENGNEVPRGVVGRIFVGNGFPF 413

Query: 477 SGYYKRPDLTEEVIVDGWFHTGDIG 501
            GY    D   + I+DG   +GD+G
Sbjct: 414 EGYTDGRD---KQIIDGLLSSGDVG 435

Length = 549

>gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi

 Score = 46.7 bits (111), Expect = 2e-05
 Identities = 59/313 (18%), Positives = 106/313 (33%), Gaps = 84/313 (26%)

Query: 223 STIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQI 282
           + ++YTSGTTG PKG  ++ +        V    +         D  ++ +PL H     
Sbjct: 90  AALIYTSGTTGLPKGCAISWRR-----TLVTSNPLSHDLNLQFPDRTYTCMPLYHGTAAF 144

Query: 283 IET-HCIHKGCSIG---------FWRGDVR----YLMEDIQELKPTMFSGVPRVYDRIYT 328
           +   +C+  G ++          FW+ DVR     +++ + EL   + +  P  YDR + 
Sbjct: 145 LGLCYCLGSGGTLCLSRKFSASQFWK-DVRDSEATIIQYVGELCRYLLATPPSPYDRDH- 202

Query: 329 GISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAM 388
               +++ G  L   ++E                             + RE F       
Sbjct: 203 --KVRVAYGNGLRPDIWE-----------------------------RFRERFN------ 225

Query: 389 LSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEAR 448
                 +P  + EF   T G      + +    +G       +        V +  ++  
Sbjct: 226 ------VPE-IGEFYAATEGVFAFTNHNVGPFTAGAIGFSGLIRRWFLENQVFLVKMDPE 278

Query: 449 LESV---PEMGYDALSSVPRGE-------ICLRGNTLFSGYYKRPDLTEEVIV------- 491
            +     P+ G+      P GE       +  +   LF GY K  D TE  ++       
Sbjct: 279 TDMPIRDPKTGF--CVRAPVGEPGEMLGRVRFKNRELFQGYLKNEDATESKLLRDVFRKG 336

Query: 492 DGWFHTGDIGEWQ 504
           D W+ TGD+    
Sbjct: 337 DIWYRTGDLLRQD 349

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468

>gnl|CDD|233316 TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase

 Score = 46.8 bits (111), Expect = 2e-05
 Identities = 43/182 (23%), Positives = 71/182 (39%), Gaps = 11/182 (6%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           +T+ E+        +A+R+ GV PGDR   Y  N P+ ++AM A  S    +       G
Sbjct: 115 VTWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAVVAMLATASVGAIWSSCSPDFG 174

Query: 138 ANAVEFIINHAEVSIAFVQE-----NKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAE 192
           A  V       E  + F  +      K       +      L T+ +  ++     +E E
Sbjct: 175 ARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRKELPTLRAVVHIPYLGPRETE 234

Query: 193 ELGV-SCFSWEEFL---QLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAE 248
              +      E+F    Q   L  E  P    +   I+++SGTTG PK +V +    + +
Sbjct: 235 APKIDGALDLEDFTAAAQAAELVFEQLP--FDHPLWILFSSGTTGLPKCIVHSAGGTLVQ 292

Query: 249 VL 250
            L
Sbjct: 293 HL 294

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway [Central intermediary metabolism, Other]. Length = 652

>gnl|CDD|235134 PRK03584, PRK03584, acetoacetyl-CoA synthetase; Provisional

 Score = 45.9 bits (110), Expect = 3e-05
 Identities = 21/58 (36%), Positives = 31/58 (53%)

Query: 67  VSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNS 124
           +  G+ GP   L++ E+        +A+R+ GV PGDR   Y  N PE ++AM A  S
Sbjct: 104 IFRGEDGPRRELSWAELRRQVAALAAALRALGVGPGDRVAAYLPNIPETVVAMLATAS 161

Length = 655

>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 45.5 bits (108), Expect = 4e-05
 Identities = 37/122 (30%), Positives = 58/122 (47%), Gaps = 12/122 (9%)

Query: 385 LQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTT 444
           L+ ++  AAP P  V+  +    G  + + YG TES +  F +  D  +  GTVG     
Sbjct: 273 LRHVIHAAAPCPADVKRAMIEWWGPVIYEYYGSTESGAVTFATSEDALSHPGTVGKA--A 330

Query: 445 VEARLESVPEMGYDALSSVPRGEIC-----LRGNTLFSGYYKRPDLTEEVIVDGWFHTGD 499
             A L  V E G      +P+GEI      + GN  F+ Y+ +P+   E+   G+  +GD
Sbjct: 331 PGAELRFVDEDG----RPLPQGEIGEIYSRIAGNPDFT-YHNKPEKRAEIDRGGFITSGD 385

Query: 500 IG 501
           +G
Sbjct: 386 VG 387

Length = 509

>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS)

 Score = 45.1 bits (107), Expect = 6e-05
 Identities = 17/64 (26%), Positives = 27/64 (42%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
            +YQE+ + + RF + + S GV  G+R        PE  +A          Y PL+   G
Sbjct: 1   YSYQELKELSARFANVLASLGVGKGERVFTLLPRSPELYVAALGTLKLGAVYGPLFSAFG 60

Query: 138 ANAV 141
              +
Sbjct: 61  PEPI 64

This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443

>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional

 Score = 45.0 bits (106), Expect = 7e-05
 Identities = 46/187 (24%), Positives = 73/187 (39%), Gaps = 22/187 (11%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
            T+ + YD   R  +++ S  +   D   +   N P       A         P+   L 
Sbjct: 40  FTWPQTYDRCCRLAASLISLNITKNDVVSVLAPNTPAMYEMHFAVPMAGAVLNPINTRLD 99

Query: 138 ANAVEFIINHAEVSIAFVQENKIP---SILSCLPRCCLYLKTIVSFAN-VSSSQKKEAEE 193
           A ++  I+ HA+  I FV  +  P    +L  L      L   V F + +   ++  +EE
Sbjct: 100 ATSIAAILRHAKPKILFVDRSFEPLAREVLHLLSSEDSNLNLPVIFIHEIDFPKRPSSEE 159

Query: 194 LGVSCFSWEEFLQLGTLDCELPPKKKTNISTIM---------YTSGTTGEPKGVVLTNQA 244
           L      +E  +Q G    E  P     +  I          YTSGTT +PKGVV++++ 
Sbjct: 160 L-----DYECLIQRG----EPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRG 210

Query: 245 IVAEVLS 251
                LS
Sbjct: 211 AYLSTLS 217

Length = 579

>gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated

 Score = 45.3 bits (108), Expect = 7e-05
 Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 13/84 (15%)

Query: 204 FLQLGTLD------CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQM-- 255
            +++  LD       +  P+   + + + YTSG+T  P GV+++++ ++A   + +Q+  
Sbjct: 138 VIEVDLLDLDSPRGSDARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIA---NFEQLMS 194

Query: 256 --FVVTGKVCSEEDTYFSFLPLAH 277
             F  TG V   + T  S+LP  H
Sbjct: 195 DYFGDTGGVPPPDTTVVSWLPFYH 218

Length = 578

>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated

 Score = 44.7 bits (106), Expect = 8e-05
 Identities = 44/204 (21%), Positives = 77/204 (37%), Gaps = 32/204 (15%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRC--GIYGSNCPEWIIAMEACNSQAITYVPLYDT 135
            +++E    +    +A+R+R ++P      G+   N PE+ + + A     I  V L  T
Sbjct: 29  TSWREHIRGSAARAAALRAR-LDPTRPPHVGVLLDNTPEFSLLLGAAALSGIVPVGLNPT 87

Query: 136 LGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELG 195
               A+   I HA+  +   +      +    P         V   NV S          
Sbjct: 88  RRGAALARDIAHADCQLVLTESAHAELLDGLDPG--------VRVINVDSPA-------- 131

Query: 196 VSCFSWEEFLQLGTLDCELPPKKKTNISTIM--YTSGTTGEPKGVVLTNQAIVAEVLSVD 253
                W + L     D E P +        M  +TSGT+G+PK V  T++ + +  + + 
Sbjct: 132 -----WADELA-AHRDAEPPFRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLA 185

Query: 254 QMFVVTGKVCSEEDTYFSFLPLAH 277
           Q F +       +D  +  +PL H
Sbjct: 186 QRFGL-----GPDDVCYVSMPLFH 204

Length = 529

>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated

 Score = 44.6 bits (106), Expect = 9e-05
 Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 11/65 (16%)

Query: 440 VPMTTVEARLES---VPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFH 496
           +P   +E R E+   +PE           G IC+RG +L SGY++  +  + +  DGW  
Sbjct: 391 LPGHEIEIRNEAGMPLPERVV--------GHICVRGPSLMSGYFRDEESQDVLAADGWLD 442

Query: 497 TGDIG 501
           TGD+G
Sbjct: 443 TGDLG 447

Length = 579

>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated

 Score = 44.1 bits (104), Expect = 1e-04
 Identities = 35/161 (21%), Positives = 60/161 (37%), Gaps = 24/161 (14%)

Query: 83  VYDAAIRFGSAM-RSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAV 141
            +   I   + M  +RG+  GD   +   N   ++    A +     ++P+   L A+ V
Sbjct: 32  EFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFAASYLGAVFLPINYRLAADEV 91

Query: 142 EFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW 201
            +I+  A   +  V E         +    L    IV  A   +  ++            
Sbjct: 92  AYILGDAGAKLLLVDEE-----FDAIV--ALETPKIVIDAAAQADSRR------------ 132

Query: 202 EEFLQLGTLDC-ELPPKKKTNISTIMYTSGTTGEPKGVVLT 241
              L  G L+         T++  +MYTSGTT  PKGV+ +
Sbjct: 133 ---LAQGGLEIPPQAAVAPTDLVRLMYTSGTTDRPKGVMHS 170

Length = 497

>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 31/95 (32%), Positives = 43/95 (45%), Gaps = 22/95 (23%)

Query: 408 GAPLTQGYGLTESCSGCFTSL-ADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRG 466
           G P+ +GYGL+E  S    SL     +  G+VG P+  V+  +                G
Sbjct: 261 GLPVYEGYGLSECAS--VVSLNTPGADRPGSVGKPLPHVQVSIA-------------NDG 305

Query: 467 EICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIG 501
           EI +RG+ L  GY     L E    D W+ TGD+G
Sbjct: 306 EILVRGS-LMLGY-----LGEPPATDDWWATGDLG 334

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448

>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase

 Score = 44.1 bits (105), Expect = 1e-04
 Identities = 17/44 (38%), Positives = 30/44 (68%), Gaps = 9/44 (20%)

Query: 225 IMYTSGTTGEPKGVVLTNQAIVAEVLSV---------DQMFVVT 259
           ++YTSG+TG+PKGV ++++A+V  +LS+         D++  VT
Sbjct: 98  VIYTSGSTGKPKGVEVSHRALVNFLLSMARRPGLGASDRLLAVT 141

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438

>gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional

 Score = 44.6 bits (106), Expect = 1e-04
 Identities = 13/22 (59%), Positives = 18/22 (81%)

Query: 225 IMYTSGTTGEPKGVVLTNQAIV 246
           I++TSG+TG PKGV++   AIV
Sbjct: 603 IIFTSGSTGRPKGVMVGQTAIV 624

Length = 1296

>gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional

 Score = 44.5 bits (106), Expect = 1e-04
 Identities = 39/139 (28%), Positives = 57/139 (41%), Gaps = 22/139 (15%)

Query: 385 LQAMLSGAAPLPIHVEEFLR--VTSGAPLTQGYGLTESCSGCFTSLADVF--------NM 434
           L+ ++S  AP+PI V E  R  +   A +   YG TE+         ++         N 
Sbjct: 290 LRRVISAGAPVPIAVIERFRAMLPPDAEILTPYGATEALPISSIESREILFATRAATDNG 349

Query: 435 IGT-VGVPMTTVEARLESVPEMGYDALSSVPR------GEICLRGNTLFSGYYKRPDLTE 487
            G  VG P+  VE R+ ++ +          R      GEI + G  +   YY RP+ T 
Sbjct: 350 AGICVGRPVDGVEVRIIAISDAPIPEWDDALRLATGEIGEIVVAGPMVTRSYYNRPEATR 409

Query: 488 EV-IVDG----WFHTGDIG 501
              I DG    W   GD+G
Sbjct: 410 LAKIPDGQGDVWHRMGDLG 428

Length = 552

>gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP) including hsFATP2, hsFATP5, and hsFATP6, and similar proteins

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 50/240 (20%), Positives = 86/240 (35%), Gaps = 55/240 (22%)

Query: 78  LTYQEVYDAAIRFGSAMRSR-GVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTL 136
           +TY EV   + +   A+ +  G+ PGD   +   N P ++                    
Sbjct: 4   VTYAEVDKRSNQVARALLAHAGLKPGDTVALLLGNEPAFL-------------------- 43

Query: 137 GANAVEFIINHAEVSIAFVQEN-KIPSILSCLPRCCLYLKTIVSFANVSSSQKK---EAE 192
               +   +       AF+  N +  S+L C  RCC   + +V+   +  + ++      
Sbjct: 44  ---WIWLGLAKLGCPTAFLNTNIRSGSLLHCF-RCC-GARVLVADPELLEAVEEILPALR 98

Query: 193 ELGVSCF---------SWEEFLQL--GTLDCELPPKKKTNISTIM------YTSGTTGEP 235
            +GV  F              L       D E  P    +  +I       YTSGTTG P
Sbjct: 99  AMGVRVFYLSHTSPPEGVISLLAKVDAASD-EPVPASLRSGVSIRSTALYIYTSGTTGLP 157

Query: 236 KGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETH-CIHKGCSI 294
           K   +++      VL    M  + G   + +D  ++ LPL H    ++    CI  G ++
Sbjct: 158 KAARISHL----RVLQCSGMLSLCG--VTADDVVYTTLPLYHSSGALLGIVGCIGLGATL 211

Fatty acid transport proteins (FATP) of this family transport long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes hsFATP2, hsFATP5, and hsFATP6, and similar proteins. Each FATP has unique patterns of tissue distribution. These FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. The hsFATP proteins exist in two splice variants; the b variant, lacking exon 3, has no acyl-CoA synthetase activity. FATPs are key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 535

>gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated

 Score = 44.2 bits (104), Expect = 1e-04
 Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 11/105 (10%)

Query: 407 SGAPLTQGYGLTES-CSG-CFTSLADVFNMI--GTVGVPMTTVEARLESVPEMG-----Y 457
           +G    Q YGL+E+ C+  C  +       I  G VG P   V+  L      G      
Sbjct: 309 TGVRTAQVYGLSETGCTALCLPTDDGSIVKIEAGAVGRPYPGVDVYLA--ATDGIGPTAP 366

Query: 458 DALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGE 502
            A  S   G + ++      GY+  P+ T EV++DGW +TGD+ E
Sbjct: 367 GAGPSASFGTLWIKSPANMLGYWNNPERTAEVLIDGWVNTGDLLE 411

Length = 540

>gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase

 Score = 44.5 bits (105), Expect = 1e-04
 Identities = 49/197 (24%), Positives = 74/197 (37%), Gaps = 54/197 (27%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           LTY E+ D   +  + ++  GV  GD   IY     E  IAM AC             +G
Sbjct: 121 LTYSELLDRVCQLANYLKDVGVKKGDAVVIYLPMLMELPIAMLACAR-----------IG 169

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCL------------YLKTIVSFANVSS 185
           A        H+ V   F  E+    I+ C P+  +             LK IV  A   S
Sbjct: 170 A-------VHSVVFAGFSAESLAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDES 222

Query: 186 SQKKEAEELGVSCFS---------------------WEEFLQLGTLDCELPPKKKTNIST 224
           +  K    +G+ C +                     W++ +      CE+      +   
Sbjct: 223 A--KNGVSVGI-CLTYENQLAMKREDTKWQEGRDVWWQDVVPNYPTKCEVEWVDAEDPLF 279

Query: 225 IMYTSGTTGEPKGVVLT 241
           ++YTSG+TG+PKGV+ T
Sbjct: 280 LLYTSGSTGKPKGVLHT 296

Length = 666

>gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 17/45 (37%), Positives = 24/45 (53%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC 122
            T+++++D   R  + +RS GV  GDR  IY     E   AM AC
Sbjct: 85  YTFRQLHDEVNRMAAMLRSLGVQRGDRVLIYMPMIAEAAFAMLAC 129

Length = 629

>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS)

 Score = 44.1 bits (105), Expect = 1e-04
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 5/52 (9%)

Query: 225 IMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLA 276
           ++YTSG+TG+PKGVV+T++ I   + +   +  +        D    F  +A
Sbjct: 104 VIYTSGSTGKPKGVVITHRNICNFLRAEGAILGIR-----PGDRVLQFASIA 150

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447

>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 83/321 (25%), Positives = 117/321 (36%), Gaps = 105/321 (32%)

Query: 228 TSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHC 287
           TSG+TG PK V +T+  + A   + + MFV   +   E D   S+LP             
Sbjct: 160 TSGSTGSPKAVQITHGNLYA---NAEAMFVAA-EFDVETDVMVSWLP------------L 203

Query: 288 IHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLF-- 345
            H    +GF              L   M+ G   V          K++    L   L   
Sbjct: 204 FHDMGMVGF--------------LTVPMYFGAELV----------KVTPMDFLRDPLLWA 239

Query: 346 EFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKI--REAFGGR-----LQAMLSGAAPL-PI 397
           E    Y+ G M        AAP     + ++   R+A  G      L+  L+GA P+ P 
Sbjct: 240 ELISKYR-GTMT-------AAPNFAYALLARRLRRQAKPGAFDLSSLRFALNGAEPIDPA 291

Query: 398 HVEEFLRVTSGAP-------LTQGYGLTE-----SCSGCFTSL------ADVFNMIG--- 436
            VE+ L    GA        +   YG+ E     S S C   L      AD+   +    
Sbjct: 292 DVEDLLDA--GARFGLRPEAILPAYGMAEATLAVSFSPCGAGLVVDEVDADLLAALRRAV 349

Query: 437 -----------TVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDL 485
                      T+G P+  +E R+  V E G   L     G I LRG ++  GY     L
Sbjct: 350 PATKGNTRRLATLGPPLPGLEVRV--VDEDG-QVLPPRGVGVIELRGESVTPGY-----L 401

Query: 486 TEEVIV-----DGWFHTGDIG 501
           T +  +     DGW  TGD+G
Sbjct: 402 TMDGFIPAQDADGWLDTGDLG 422

Length = 545

>gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase

 Score = 44.1 bits (104), Expect = 1e-04
 Identities = 19/45 (42%), Positives = 26/45 (57%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC 122
           LTY++++     F SA+R+ GV  GDR  IY     E + AM AC
Sbjct: 84  LTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAMLAC 128

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. Length = 628

>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS)

 Score = 43.2 bits (103), Expect = 2e-04
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 10/84 (11%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAI-----TYVPL 132
           LTY+E+ + A R    +R+RGV PGD   I     PE ++A+      A+      YVPL
Sbjct: 13  LTYRELNERANRLAHYLRARGVGPGDLVAICLERSPEMVVAI-----LAVLKAGAAYVPL 67

Query: 133 YDTLGANAVEFIINHAEVSIAFVQ 156
                A  + +++  +   +    
Sbjct: 68  DPAYPAERLAYMLEDSGAKLLLTD 91

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445

>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional

 Score = 43.4 bits (103), Expect = 2e-04
 Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 7/65 (10%)

Query: 214 LPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKV-CSEEDTYFSF 272
              +   + + I++TSG+ G PKGVVL+++ ++A          V  ++  S ED  F+ 
Sbjct: 787 FCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLA------NRAQVAARIDFSPEDKVFNA 840

Query: 273 LPLAH 277
           LP+ H
Sbjct: 841 LPVFH 845

Length = 1140

>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS)

 Score = 43.7 bits (104), Expect = 2e-04
 Identities = 25/109 (22%), Positives = 43/109 (39%), Gaps = 21/109 (19%)

Query: 411 LTQGYGLTESCSGCFTSLADVFN-MIGTVGVPMTTVEARL---ESVPEMGYDALSSVPRG 466
           L   YG TE+      + + +       +G P+      +   +  P +   A+     G
Sbjct: 234 LLNTYGPTEATVTA--TASRLTPGKPVNIGRPLPNYTCWVLDPDLEPLVPIGAV-----G 286

Query: 467 EICLRGNTLFSGYYKRPDLTEEV-IVDGW---------FHTGDIGEWQP 505
           E+C+ G  +  GY  RP+LT E  I D +         + TGD+  +  
Sbjct: 287 ELCIGGPGVARGYLNRPELTAEKFIPDPFWLNNPGGRIYRTGDLVRYLE 335

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447

>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase

 Score = 43.4 bits (102), Expect = 3e-04
 Identities = 43/213 (20%), Positives = 75/213 (35%), Gaps = 22/213 (10%)

Query: 73  GPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPL 132
           G     +Y+E+     R    +   GV  GD       N  E+     AC        PL
Sbjct: 49  GAVRRFSYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLACARIGAVLNPL 108

Query: 133 YDTLGANAVEFIINHAEVSI--------AFVQENKIPSILSCLPRCCLYLKTIVSFANVS 184
                   + F++NHA+  +         F        + S LP     L+ +V    V 
Sbjct: 109 MPIFRERELSFMLNHADSKVFVVPSVFRGFDHAAMARELQSKLP----ALRQVV----VI 160

Query: 185 SSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQA 244
                ++ +  +     ++      +    P     +++ ++YTSGTTGEPKGV+ T   
Sbjct: 161 DGDGDDSFDRVLMTPERDDTPDAAAI-LAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANT 219

Query: 245 IVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAH 277
           + + +    +   +        D      P+AH
Sbjct: 220 LFSNIHPYAERLEL-----GGGDVILMASPMAH 247

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538

>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)

 Score = 43.3 bits (102), Expect = 3e-04
 Identities = 46/206 (22%), Positives = 77/206 (37%), Gaps = 32/206 (15%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           LTY E+        + + +RGV P  R  +   N  + +IA+ A +        +   L 
Sbjct: 29  LTYSELRARVEGVAARLHARGVRPQQRVAVVAPNSVDAVIALLALHRLGAVPALMNPRLK 88

Query: 138 ANAVEFIINHAEVSIAFVQENK--IPSILSCLPRCC-LYLKTIVSFANVSSSQKKEAEEL 194
              +  +I   E++ A +  +   + +I         L L  +V               L
Sbjct: 89  PAEIAELIKRGEMTAAVIAVDAQVMDAIFQSGSGVRVLALGDLV--------------GL 134

Query: 195 GVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQ 254
           G    +            E PP++    + + YTSGTTG PKG V+  +A  + VL    
Sbjct: 135 GEPESAGPPI--------EDPPREPEQPAFVFYTSGTTGLPKGAVIPQRAAESRVL---- 182

Query: 255 MFVVT--GKVCSEEDTYFSFLPLAHI 278
            F+ T  G      +     +PL H+
Sbjct: 183 -FMSTQAGLRHGRHNVVLGLMPLYHV 207

CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495

>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)

 Score = 42.9 bits (101), Expect = 3e-04
 Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 5/97 (5%)

Query: 410 PLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEIC 469
                YG TE+ +  +          GT   P    E R+  +     +AL +   GE+ 
Sbjct: 296 EKVNIYGTTEAMNSLYMRDPRT----GTEMRPGFFSEVRIVRIGGSPDEALPNGEEGELV 351

Query: 470 L-RGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQP 505
           +   +  F+GY  +P  T E + DGW+ T D+    P
Sbjct: 352 VAAADATFTGYLNQPQATAEKLQDGWYRTSDVAVVDP 388

CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 52/206 (25%), Positives = 87/206 (42%), Gaps = 32/206 (15%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           L+Y+++   A    +A+++R    GDR  +   + P+++ A   C    +  VP Y    
Sbjct: 41  LSYRDLDLRARTIAAALQARAS-FGDRAVLLFPSGPDYVAAFFGCLYAGVIAVPAYP--- 96

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
                      E +    QE  +  I    PR  L   T+    +       + EEL  +
Sbjct: 97  ----------PESARRHHQERLLSIIADAEPRLLL---TVADLRD----SLLQMEELAAA 139

Query: 198 CFSWEEFLQLGTLDCEL------PPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLS 251
             +  E L + TLD  L      P  +  +I+ + YTSG+T  PKGV +++  +VA    
Sbjct: 140 --NAPELLCVDTLDPALAEAWQEPALQPDDIAFLQYTSGSTALPKGVQVSHGNLVANEQL 197

Query: 252 VDQMFVVTGKVCSEEDTYFSFLPLAH 277
           +   F   G   + +D   S+LPL H
Sbjct: 198 IRHGF---GIDLNPDDVIVSWLPLYH 220

Length = 4334

>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 42.4 bits (100), Expect = 4e-04
 Identities = 30/128 (23%), Positives = 53/128 (41%), Gaps = 8/128 (6%)

Query: 383 GRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNM-IGTVGVP 441
            +L+   S   PL   V  + +   G  +   YG TE+        A    +  G++G+P
Sbjct: 205 LKLRVASSAGEPLNPEVVRWFQANLGVTIHDHYGQTETGMPVGNHHALAHEVRAGSMGLP 264

Query: 442 MTTVEARLESVPEMGYDALSSVPRGEICLRGNT----LFSGYYKRPDLTEEVIVDGWFHT 497
           +        +V +     L+    G++ +   +     FSGY+  P+ T E+I   W+ T
Sbjct: 265 LPGYRI---AVLDDDGQPLADGEPGQLAIDVASSPLLWFSGYWDDPEKTAELIAGRWYVT 321

Query: 498 GDIGEWQP 505
           GD+ E   
Sbjct: 322 GDLVERDE 329

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440

>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated

 Score = 42.7 bits (101), Expect = 4e-04
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 466 GEIC-LRGNTLFSGYYKRPDLTEEVIVDGWFHTGDI 500
           GE+    G   F GYY  P+   E +  G + +GD+
Sbjct: 353 GELVNTAGPGGFEGYYNDPEADAERMRGGVYWSGDL 388

Length = 529

>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes

 Score = 42.6 bits (101), Expect = 4e-04
 Identities = 16/46 (34%), Positives = 24/46 (52%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACN 123
           L+Y E    A R+  A+R+ GV  GD   +   N PE+++A  A  
Sbjct: 4   LSYAEFNAWANRYAHALRALGVKKGDVVALLMENRPEYLLAWLALA 49

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444

>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 42.0 bits (99), Expect = 5e-04
 Identities = 35/163 (21%), Positives = 66/163 (40%), Gaps = 6/163 (3%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
            ++ E+   A R    + + GV PGD   +   N   +  A  A        VP+     
Sbjct: 12  RSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFK 71

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
              + +I+  +   +     + +  + S LP     L ++ +   ++++ +     L   
Sbjct: 72  PEEIAYILEDSGARVLIAHADLLHGLASALPAGVTVL-SVPTPPEIAAAYRISPALLTPP 130

Query: 198 CFS--WEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGV 238
             +  WE +L       + PP  +    +++YTSGTTG PKGV
Sbjct: 131 AGAIDWEGWLAQQEP-YDGPPVPQP--QSMIYTSGTTGHPKGV 170

Length = 509

>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional

 Score = 42.4 bits (100), Expect = 5e-04
 Identities = 33/180 (18%), Positives = 59/180 (32%), Gaps = 49/180 (27%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           +TY+E+ + + R     RS G+  GD   I+  N   ++    A     + Y  +   L 
Sbjct: 25  VTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTCVNSHLT 84

Query: 138 ANAVEFIIN----------HAEVSIAFVQENKIPSILSCLPRCCLYLKT-----IVSFAN 182
                +I++           A++ +A     + P +   L    +          V +A 
Sbjct: 85  PAEAAYIVDDSGARALITSAAKLDVARALLKQCPGVRHRL----VLDGDGELEGFVGYAE 140

Query: 183 VSSSQKK---EAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVV 239
             +         E LG                             ++Y+SGTTG PKG+ 
Sbjct: 141 AVAGLPATPIADESLGTD---------------------------MLYSSGTTGRPKGIK 173

Length = 511

>gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated

 Score = 42.2 bits (100), Expect = 6e-04
 Identities = 44/244 (18%), Positives = 79/244 (32%), Gaps = 54/244 (22%)

Query: 51  DSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGS 110
           ++A R P+   L    + + +      ++Y E+   A R+     +RGV  GD   +   
Sbjct: 45  EAAARHPDRPAL----LFEDQS-----ISYAELNARANRYAHWAAARGVGKGDVVALLME 95

Query: 111 NCPEWIIAMEACNSQAITYVPLYDTLGANAVEFI------------INHAEVSIAFVQEN 158
           N PE++ A                 LGA  V  +            +N  +     V E 
Sbjct: 96  NRPEYLAAWLGLAK-----------LGA-VVALLNTQQRGAVLAHSLNLVDAKHLIVGEE 143

Query: 159 KIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKK 218
                   +       +   +             +       +E+            P  
Sbjct: 144 -------LVEAF----EEARADLARPPRLWVAGGDTLDDPEGYEDLAAAAAGAPTTNPAS 192

Query: 219 KTNIS---TIMY--TSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFL 273
           ++ ++   T  Y  TSGTTG PK  V+++       L     F    ++ + +D  +  L
Sbjct: 193 RSGVTAKDTAFYIYTSGTTGLPKAAVMSH----MRWLKAMGGFGGLLRL-TPDDVLYCCL 247

Query: 274 PLAH 277
           PL H
Sbjct: 248 PLYH 251

Length = 600

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 42.5 bits (100), Expect = 7e-04
 Identities = 65/307 (21%), Positives = 104/307 (33%), Gaps = 81/307 (26%)

Query: 221  NISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFS--------F 272
            N++ ++YTSG+TG PKG    + A+V  + +  + + ++      + T F+        F
Sbjct: 1719 NLAYVIYTSGSTGRPKGAGNRHGALVNRLCATQEAYQLSAADVVLQFTSFAFDVSVWELF 1778

Query: 273  LPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISN 332
             PL +    +I     H+         D   L++ I+  + T    VP +          
Sbjct: 1779 WPLINGARLVIAPPGAHR---------DPEQLIQLIERQQVTTLHFVPSML--------- 1820

Query: 333  KISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGA 392
                     ++L +               Q +    L  +V                 G 
Sbjct: 1821 ---------QQLLQMD------------EQVEHPLSLRRVVCG---------------GE 1844

Query: 393  APLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESV 452
            A     +  +L       L   YG TE+            ++ G   VP+    A L   
Sbjct: 1845 ALEVEALRPWLERLPDTGLFNLYGPTETAVDVTHWTCRRKDLEGRDSVPIGQPIANLS-- 1902

Query: 453  PEMGY--DA-LSSVPR---GEICLRGNTLFSGYYKRPDLTEEVIVDGWF--------HTG 498
                Y  DA L+ VP    GE+ L G  L  GY  RP LT E  V   F         TG
Sbjct: 1903 ---TYILDASLNPVPIGVAGELYLGGVGLARGYLNRPALTAERFVADPFGTVGSRLYRTG 1959

Query: 499  DIGEWQP 505
            D+  ++ 
Sbjct: 1960 DLARYRA 1966

Length = 3956

>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA)

 Score = 41.4 bits (98), Expect = 9e-04
 Identities = 10/23 (43%), Positives = 19/23 (82%)

Query: 225 IMYTSGTTGEPKGVVLTNQAIVA 247
           I++TSG+TG+PKGV +++  + +
Sbjct: 102 ILFTSGSTGKPKGVQISHANLAS 124

DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447

>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase

 Score = 41.1 bits (97), Expect = 0.001
 Identities = 13/17 (76%), Positives = 15/17 (88%)

Query: 225 IMYTSGTTGEPKGVVLT 241
           I+YTSGTTG+PKG V T
Sbjct: 105 IIYTSGTTGKPKGTVHT 121

This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474

>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes

 Score = 40.7 bits (96), Expect = 0.001
 Identities = 30/110 (27%), Positives = 43/110 (39%), Gaps = 25/110 (22%)

Query: 414 GYGLTESCSGCFTSLADVFNMIGTVGV----PMTTVEARLESVPEMGYDA---LSSVPRG 466
            YG TE          ++FN  G VG      +  V+  +E+  E   DA      VP G
Sbjct: 226 FYGSTE----GNVGFINLFNKPGAVGRLPPAAIAVVKYDVET-EEPIRDANGFCIKVPPG 280

Query: 467 EICL---RGNTL--FSGYYKRPDLTEEVIV-------DGWFHTGDIGEWQ 504
           E+ L          F GY    + TE+ I+       D +F+TGD+    
Sbjct: 281 EVGLLLGEITDRNPFDGYT-DDEATEKKILRDVFKKGDAYFNTGDLVRRD 329

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444

>gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae

 Score = 41.1 bits (97), Expect = 0.001
 Identities = 25/112 (22%), Positives = 42/112 (37%), Gaps = 13/112 (11%)

Query: 47  QFFCDSAKRIPNNQML--GGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDR 104
           +     A+R P+   +  G              LTY E+   A R  + +R+ GV P  R
Sbjct: 3   ELVEAQAERTPDAIAVVCGDES-----------LTYAELNRRANRLAARLRAAGVGPESR 51

Query: 105 CGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQ 156
            G+     P+ ++A+ A       YVPL        + +I+  A   +    
Sbjct: 52  VGVCLRRSPDLVVALLAVLKAGAAYVPLDPAYPPERLAYILEDAGARLVLTD 103

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449

>gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 36/138 (26%), Positives = 56/138 (40%), Gaps = 21/138 (15%)

Query: 385 LQAMLSGAAPLPIHV-EEFLRVTS-GAPLTQGYGLTESCSGCFTSLADVFNMIGT----- 437
           L+ +LS  AP+P  +   F+      A +   YG TE+         +V           
Sbjct: 201 LRRVLSAGAPVPPDLLRRFVANLMPEAEIHTPYGATEALPVASIEGREVLAESAEPPEAG 260

Query: 438 ----VGVPMTTVEAR---LESVPEMGYDALSSVPR---GEICLRGNTLFSGYYKRPDLTE 487
               VG P+  ++ R   ++  P   +D    +P    GEI + G  +   YY RP+ T+
Sbjct: 261 AGVCVGHPVPGIDVRIIPIDDGPIASWDDDIELPPGEVGEIIVSGPHVTREYYNRPEATK 320

Query: 488 -EVIVDG---WFHTGDIG 501
              I DG   W   GD+G
Sbjct: 321 LAKISDGNRIWHRMGDLG 338

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455

>gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated

 Score = 40.4 bits (94), Expect = 0.002
 Identities = 49/209 (23%), Positives = 83/209 (39%), Gaps = 32/209 (15%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           L Y+E+        + +R++ V+ G R  +   N PE  +++ AC       V     L 
Sbjct: 42  LRYRELVAEVGGLAADLRAQSVSRGSRVLVISDNGPETYLSVLACAKLGAIAVMADGNLP 101

Query: 138 ANAVEF---IINHAEVSIA---FVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEA 191
             A+E    I + A   +A    +  + +P  L  +P   + +  +   +  S      A
Sbjct: 102 IAAIERFCQITDPAAALVAPGSKMASSAVPEALHSIPVIAVDIAAVTRESEHSLDAASLA 161

Query: 192 EELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVA--EV 249
                           G+ D             +++TSGTTGEPK V+L N+   A  ++
Sbjct: 162 GNAD-----------QGSEDP----------LAMIFTSGTTGEPKAVLLANRTFFAVPDI 200

Query: 250 LSVDQMFVVTGKVCSEEDTYFSFLPLAHI 278
           L  + +  VT  V    +T +S LP  HI
Sbjct: 201 LQKEGLNWVTWVV---GETTYSPLPATHI 226

Length = 540

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 40.9 bits (96), Expect = 0.002
 Identities = 48/186 (25%), Positives = 76/186 (40%), Gaps = 45/186 (24%)

Query: 76   VW----LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVP 131
            VW    L Y E++  A R    +R +GV P     I     P+ ++ + A       YVP
Sbjct: 1151 VWDGGSLDYAELHAQANRLAHYLRDKGVGPDVCVAIAAERSPQLLVGLLAILKAGGAYVP 1210

Query: 132  LYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEA 191
            L     A  + +++  + V +   Q      +L  LP+                     A
Sbjct: 1211 LDPDYPAERLAYMLADSGVELLLTQS----HLLERLPQ---------------------A 1245

Query: 192  EELGVSCFSWEEFLQLGTLDCELPPKKKT-------NISTIMYTSGTTGEPKGVVLTNQA 244
            E  GVS       + L +L  +  P +         N++ ++YTSG+TG+PKGV  T+ A
Sbjct: 1246 E--GVSA------IALDSLHLDSWPSQAPGLHLHGDNLAYVIYTSGSTGQPKGVGNTHAA 1297

Query: 245  IVAEVL 250
            + AE L
Sbjct: 1298 L-AERL 1302

Length = 4334

>gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 35/128 (27%), Positives = 48/128 (37%), Gaps = 21/128 (16%)

Query: 384 RLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNM------IGT 437
           RL+  +S   PL   V E ++   G  +  GYG TE+        A + N        G+
Sbjct: 200 RLREAVSAGEPLNPEVIERVKKAWGLTIRDGYGQTETT-------AMIGNSPGQKVKPGS 252

Query: 438 VGVPMTTVEARLESVPEMGYDALSSVPRGEICL----RGNTLFSGYYKRPDLTEEVIVDG 493
           +G P+      L    E        V  GEI L    R   L  GY   P+ T      G
Sbjct: 253 MGRPLPGYRVVLLD-DE---GKEIPVTEGEIALDLGDRPIGLMLGYMGDPEKTAAAFRGG 308

Query: 494 WFHTGDIG 501
           ++ TGD  
Sbjct: 309 YYRTGDKA 316

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433

>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed

 Score = 40.0 bits (94), Expect = 0.003
 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 5/57 (8%)

Query: 221 NISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAH 277
           +++ ++YTSGTTGEPKGV+ T   ++A ++   +   +       +D      P+AH
Sbjct: 198 DVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERLGLGA-----DDVILMASPMAH 249

Length = 547

>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme)

 Score = 39.8 bits (94), Expect = 0.003
 Identities = 12/15 (80%), Positives = 15/15 (100%)

Query: 225 IMYTSGTTGEPKGVV 239
           I+YTSG+TG+PKGVV
Sbjct: 230 ILYTSGSTGKPKGVV 244

Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602

>gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional

 Score = 40.0 bits (94), Expect = 0.003
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 466 GEIC-LRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIG 501
           GE+    G   F GYY  P+ T E +  G + +GD+ 
Sbjct: 352 GELVNTAGAGFFEGYYNNPEATAERMRHGMYWSGDLA 388

Length = 540

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	508
KOG1256	691	consensus Long-chain acyl-CoA synthetases (AMP-for	100.0
PLN02861	660	long-chain-fatty-acid-CoA ligase	100.0
PLN02614	666	long-chain acyl-CoA synthetase	100.0
PLN02430	660	long-chain-fatty-acid-CoA ligase	100.0
PLN02736	651	long-chain acyl-CoA synthetase	100.0
PTZ00342	746	acyl-CoA synthetase; Provisional	100.0
COG1022	613	FAA1 Long-chain acyl-CoA synthetases (AMP-forming)	100.0
PLN02387	696	long-chain-fatty-acid-CoA ligase family protein	100.0
KOG1180	678	consensus Acyl-CoA synthetase [Lipid transport and	100.0
PTZ00216	700	acyl-CoA synthetase; Provisional	100.0
KOG1176	537	consensus Acyl-CoA synthetase [Lipid transport and	100.0
KOG1177	596	consensus Long chain fatty acid acyl-CoA ligase [L	100.0
COG0318	534	CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l	100.0
COG0365	528	Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l	100.0
PTZ00237	647	acetyl-CoA synthetase; Provisional	100.0
PLN02654	666	acetate-CoA ligase	100.0
PRK07529	632	AMP-binding domain protein; Validated	100.0
PLN02860	563	o-succinylbenzoate-CoA ligase	100.0
PRK06334	539	long chain fatty acid--[acyl-carrier-protein] liga	100.0
PRK08180	614	feruloyl-CoA synthase; Reviewed	100.0
TIGR02188	625	Ac_CoA_lig_AcsA acetate--CoA ligase. This model de	100.0
PRK07788	549	acyl-CoA synthetase; Validated	100.0
PRK12582	624	acyl-CoA synthetase; Provisional	100.0
PRK00174	637	acetyl-CoA synthetase; Provisional	100.0
PRK04319	570	acetyl-CoA synthetase; Provisional	100.0
PF00501	417	AMP-binding: AMP-binding enzyme; InterPro: IPR0008	100.0
PRK13295	547	cyclohexanecarboxylate-CoA ligase; Reviewed	100.0
TIGR02316	628	propion_prpE propionate--CoA ligase. This family c	100.0
PLN02574	560	4-coumarate--CoA ligase-like	100.0
PRK05857	540	acyl-CoA synthetase; Validated	100.0
PLN02246	537	4-coumarate--CoA ligase	100.0
PRK07656	513	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK05677	562	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK08314	546	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK13382	537	acyl-CoA synthetase; Provisional	100.0
TIGR03208	538	cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase.	100.0
PRK03640	483	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PRK10524	629	prpE propionyl-CoA synthetase; Provisional	100.0
PRK06187	521	long-chain-fatty-acid--CoA ligase; Validated	100.0
PLN02330	546	4-coumarate--CoA ligase-like 1	100.0
PRK09274	552	peptide synthase; Provisional	100.0
PRK08008	517	caiC putative crotonobetaine/carnitine-CoA ligase;	100.0
PRK05620	576	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07638	487	acyl-CoA synthetase; Validated	100.0
COG1021	542	EntE Peptide arylation enzymes [Secondary metaboli	100.0
TIGR02275	527	DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot	100.0
PRK05605	573	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK08316	523	acyl-CoA synthetase; Validated	100.0
PRK06839	496	acyl-CoA synthetase; Validated	100.0
PRK06087	547	short chain acyl-CoA synthetase; Reviewed	100.0
PRK07008	539	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK06155	542	crotonobetaine/carnitine-CoA ligase; Provisional	100.0
PRK05852	534	acyl-CoA synthetase; Validated	100.0
PRK07786	542	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK06060	705	acyl-CoA synthetase; Validated	100.0
PRK07769	631	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07470	528	acyl-CoA synthetase; Validated	100.0
PRK12492	562	long-chain-fatty-acid--CoA ligase; Provisional	100.0
PRK03584	655	acetoacetyl-CoA synthetase; Provisional	100.0
PLN03102	579	acyl-activating enzyme; Provisional	100.0
PRK08043	718	bifunctional acyl-[acyl carrier protein] synthetas	100.0
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	100.0
PRK06145	497	acyl-CoA synthetase; Validated	100.0
PLN03052	728	acetate--CoA ligase; Provisional	100.0
PRK07514	504	malonyl-CoA synthase; Validated	100.0
PRK10946	536	entE enterobactin synthase subunit E; Provisional	100.0
TIGR03098	515	ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor	100.0
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	100.0
PRK12476	612	putative fatty-acid--CoA ligase; Provisional	100.0
PRK06188	524	acyl-CoA synthetase; Validated	100.0
PRK08315	559	AMP-binding domain protein; Validated	100.0
PRK07059	557	Long-chain-fatty-acid--CoA ligase; Validated	100.0
TIGR01217	652	ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym	100.0
TIGR03205	541	pimA dicarboxylate--CoA ligase PimA. PimA, a membe	100.0
PRK12583	558	acyl-CoA synthetase; Provisional	100.0
TIGR02262	508	benz_CoA_lig benzoate-CoA ligase family. Character	100.0
PRK06164	540	acyl-CoA synthetase; Validated	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
PRK06018	542	putative acyl-CoA synthetase; Provisional	100.0
PRK06710	563	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK10252	1296	entF enterobactin synthase subunit F; Provisional	100.0
PRK09088	488	acyl-CoA synthetase; Validated	100.0
PRK08751	560	putative long-chain fatty acyl CoA ligase; Provisi	100.0
PRK06178	567	acyl-CoA synthetase; Validated	100.0
PLN02479	567	acetate-CoA ligase	100.0
PRK13383	516	acyl-CoA synthetase; Provisional	100.0
PRK13388	540	acyl-CoA synthetase; Provisional	100.0
PRK05851	525	long-chain-fatty-acid--[acyl-carrier-protein] liga	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
PRK08974	560	long-chain-fatty-acid--CoA ligase; Validated	100.0
TIGR01734	502	D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PRK07867	529	acyl-CoA synthetase; Validated	100.0
PRK13390	501	acyl-CoA synthetase; Provisional	100.0
PRK08279	600	long-chain-acyl-CoA synthetase; Validated	100.0
PRK05691	4334	peptide synthase; Validated	100.0
PRK07787	471	acyl-CoA synthetase; Validated	100.0
PRK08162	545	acyl-CoA synthetase; Validated	100.0
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	100.0
PRK09192	579	acyl-CoA synthetase; Validated	100.0
PRK04813	503	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
PRK13391	511	acyl-CoA synthetase; Provisional	100.0
PRK05691	4334	peptide synthase; Validated	100.0
PRK05850	578	acyl-CoA synthetase; Validated	100.0
TIGR01733	408	AA-adenyl-dom amino acid adenylation domain. This	100.0
PRK07798	533	acyl-CoA synthetase; Validated	100.0
PRK08276	502	long-chain-fatty-acid--CoA ligase; Validated	100.0
PTZ00297	1452	pantothenate kinase; Provisional	100.0
PRK07768	545	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK09029	458	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PRK12406	509	long-chain-fatty-acid--CoA ligase; Provisional	100.0
PRK07445	452	O-succinylbenzoic acid--CoA ligase; Reviewed	100.0
TIGR01923	436	menE O-succinylbenzoate-CoA ligase. This model rep	100.0
KOG1179	649	consensus Very long-chain acyl-CoA synthetase/fatt	100.0
KOG1175	626	consensus Acyl-CoA synthetase [Lipid transport and	100.0
PLN03051	499	acyl-activating enzyme; Provisional	100.0
PRK07868	994	acyl-CoA synthetase; Validated	100.0
PRK08308	414	acyl-CoA synthetase; Validated	100.0
COG1020	642	EntF Non-ribosomal peptide synthetase modules and	100.0
PRK07824	358	O-succinylbenzoic acid--CoA ligase; Provisional	99.96
KOG3628	1363	consensus Predicted AMP-binding protein [General f	99.95
TIGR03089	227	conserved hypothetical protein TIGR03089. This pro	99.94
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	99.92
TIGR02372	386	4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv	99.89
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	99.86
KOG1178	1032	consensus Non-ribosomal peptide synthetase/alpha-a	99.71
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	99.67
KOG3628	1363	consensus Predicted AMP-binding protein [General f	99.67
TIGR02304	430	aden_form_hyp probable adenylate-forming enzyme. M	99.33
PF04443	365	LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR	98.61
PF03321	528	GH3: GH3 auxin-responsive promoter; InterPro: IPR0	96.06
PLN02247	606	indole-3-acetic acid-amido synthetase	95.64
PRK09188	365	serine/threonine protein kinase; Provisional	95.06
PLN02620	612	indole-3-acetic acid-amido synthetase	94.47
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	94.37
PLN02249	597	indole-3-acetic acid-amido synthetase	94.36
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	83.97
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	83.76

>KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism]

Probab=100.00  E-value=2e-71  Score=549.66  Aligned_cols=481  Identities=43%  Similarity=0.756  Sum_probs=429.6

Q ss_pred             Ccccccccc--cCCCCCCCCCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCC
Q 010536           23 GPVYRCIYA--KDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVN  100 (508)
Q Consensus        23 ~~~~~~~~~--~~~~~~~~~~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~  100 (508)
                      +++||+...  .++.+....+..|+++.|.+.+..+|+.+++-+....+ ..+.|+.+||+|+.+++..++..|+++|++
T Consensus        53 ~~~~~s~~~~~~~~~~~~~~~~~T~~~~f~~~~~~~~~~p~LG~r~~~~-~~~~~~~~tY~q~~e~~~~~~~~l~~lG~~  131 (691)
T KOG1256|consen   53 DGSRRSAVLPREELFSCPFDGPLTLYEGFRRSVEKSGNGPMLGTRVIVD-GKGPYEWLTYKQVYERAENLGSGLRKLGVK  131 (691)
T ss_pred             CCceeeeeccCCCCCCCCCCCcccHHHHhhcchhccCCCCceeEEeccc-CCCCcEEEEHHHHHHHHHHHHHHHHHhCCC
Confidence            478888887  45666667899999999999999999999998883322 567889999999999999999999999999


Q ss_pred             CCCEEEEEcCCcHhHHHHHHHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEc-CCChhhHhhcCcc-CCCCccEEE
Q 010536          101 PGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQ-ENKIPSILSCLPR-CCLYLKTIV  178 (508)
Q Consensus       101 ~gd~Vai~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~-~~~~~~~~~~~~~-~~~~~~~~~  178 (508)
                      +++.|+|+..|++||+++.+||...|.++|||...++++.++++++++++.++|+| .+....+.+.... ..+.++.++
T Consensus       132 ~~~~VGIy~~N~pEWiis~~a~~~~~~v~VplYdTlg~ea~~~Ii~~~e~~iv~vd~~~k~~~ll~~~~~~~~~~LK~iI  211 (691)
T KOG1256|consen  132 EDSKVGIYAFNRPEWIISEMACYAYSLVNVPLYDTLGAEAVHYIINHAEISIVFVDNAKKAEKLLEIKENDSLPSLKAII  211 (691)
T ss_pred             CCceEEEeccCChhhHHhHHHHHhcCCEEeecccCCCHHHHHHHHHhcceeEEEEeCHHHHHHHHhhcccccCccceeEE
Confidence            99999999999999999999999999999999999999999999999999999999 5666777666655 367899999


Q ss_pred             EecCCCchhhhhhhhcCceeeeHHHHHhcCC-CCCCC-CCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhh
Q 010536          179 SFANVSSSQKKEAEELGVSCFSWEEFLQLGT-LDCEL-PPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMF  256 (508)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~  256 (508)
                      .++.............++.+++|+++.+.+. ....+ .+..+++.+.|+|||||||.||||++||+|+++.+.......
T Consensus       212 ~~~~~~~~~~~~~~~~gv~v~S~~e~~~lG~~~~~~~~~~p~p~d~atI~yTSGTTG~PKGVMLTH~Niv~~v~~~~~~~  291 (691)
T KOG1256|consen  212 QLDEPSDELKEKAENNGVEVYSWDEFEELGKKNQRKPRVPPKPDDLATICYTSGTTGNPKGVMLTHRNIVSDVAGIFFLS  291 (691)
T ss_pred             EecCCchhhhhhhhcCCeEEEEHHHHHhhcccccCCCCCCCCccceEEEEEcCCCCCCCceEEEeccceeehhhhhhhhh
Confidence            9999988888888888899999999999883 33333 477899999999999999999999999999999766433222


Q ss_pred             hhcc-ccCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEecCCHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhh
Q 010536          257 VVTG-KVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKIS  335 (508)
Q Consensus       257 ~~~~-~~~~~~~~~l~~~pl~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~  335 (508)
                      .... .....+|++++++||.|++..++....++.|+.+.+.++|+..+.+.++..+||.+.++|.+|.++.+.+++...
T Consensus       292 ~~~~~~~~~~~dv~lSyLPLAHi~er~~~~~~~~~G~~IgF~~gD~~~l~~dlk~lkPT~f~~VPRVl~riye~I~~~~~  371 (691)
T KOG1256|consen  292 AAENAKATVGDDVYLSYLPLAHIFERVVELYTFYIGAKIGFARGDILKLTDDLKELKPTVFPGVPRVLERIYEGIQKQVQ  371 (691)
T ss_pred             hcccccccccCceEEEeCcHHHHHHHHHHHhHhhcccEEEEecCChHHHHHHHHHhCCcEEeccHhHHHHHHHHHHHHHh
Confidence            2111 123347999999999999999988888899999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHHHHHHHHHh-hhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeee
Q 010536          336 SGGALSKKLFEFAYNYKL-GNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQG  414 (508)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~  414 (508)
                      +.+.++++++++|...+. ..+.+|.... .....|++.++++++.+|.++|.+++|++|+++++...++..+|+.|+++
T Consensus       372 ~sgflkr~l~~~A~~~k~~~~~~~G~~~~-~~~~~D~lVf~KI~~~LGg~vr~~~sGaAPls~ev~~F~r~~~g~~v~eG  450 (691)
T KOG1256|consen  372 KSGFLKRKLFNFAMAYKLEHRLMKGKSRS-RDRFADKLVFHKIKQSLGGNVRLIISGAAPLSPEVLTFFRAALGCRVLEG  450 (691)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhhCCCCcc-cchHHHHHHHHHHHHHhcCceeEEEecCCCCCHHHHHHHHHhcCceeeec
Confidence            999999999999999999 5577776654 68899999999999999999999999999999999999999999999999


Q ss_pred             cccccCCcceeeccCCCCcccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccc-cCC
Q 010536          415 YGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDG  493 (508)
Q Consensus       415 YG~TE~~~~~~~~~~~~~~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~-~~g  493 (508)
                      ||+||+++.++...+++. ..+++|.|+|+++++++|+++-+..+.+  ..|||||||++|+.|||+||+.|.+++ .||
T Consensus       451 YGlTEts~g~~~~~~~d~-~lgsvG~p~p~~~vKL~dvpe~ny~a~~--~~GEIcirG~~Vf~GYyK~p~~T~e~ideDG  527 (691)
T KOG1256|consen  451 YGLTETSAGTTLTLPGDN-VLGSVGPPVPGNEVKLVDVPEMNYDADG--SKGEICVRGPNVFMGYYKDPEKTAEAIDEDG  527 (691)
T ss_pred             ccccccCCceEeccCCCC-CCCCcCCcccCceEEEechHHhCcCcCC--CcceEEEecchhceeccCChHHHhhhhcccc
Confidence            999999977776666665 5599999999999999999999888776  579999999999999999999999999 999


Q ss_pred             ccccCcEEEEcCCCC
Q 010536          494 WFHTGDIGEWQPMEL  508 (508)
Q Consensus       494 w~~TGDlg~~d~dG~  508 (508)
                      |++|||+|++|++|+
T Consensus       528 WLhTGDiG~~~p~G~  542 (691)
T KOG1256|consen  528 WLHTGDIGEWDPNGT  542 (691)
T ss_pred             ccccccceeECCCcc
Confidence            999999999999995

>PLN02861 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=8.8e-70  Score=575.67  Aligned_cols=507  Identities=78%  Similarity=1.315  Sum_probs=414.6

Q ss_pred             CCCcccccccCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeH
Q 010536            1 MSETYTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTY   80 (508)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty   80 (508)
                      |.+|||..+++++|...++|.++++||+...++.+...+....|+.++|.+.++++|+++|+.+....++..+.++.+||
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~p~~~al~~~~~~~~~~g~~~~~Ty   80 (660)
T PLN02861          1 MAETYTVKVEESRPATGGKPSAGPVYRSIYAKDGLLDLPADIDSPWQFFSDAVKKYPNNQMLGRRQVTDSKVGPYVWLTY   80 (660)
T ss_pred             CCccceeeeccCCCCCCCCCCCCCcccccccccccccCCCCCCCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCceEEEH
Confidence            78999999999999988999999999999988888777778889999999999999999999753111333456678999


Q ss_pred             HHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHHHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCCh
Q 010536           81 QEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI  160 (508)
Q Consensus        81 ~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~  160 (508)
                      +||.++++++|.+|.++|+++||+|+|+++|+++++++++||+++|+++|||++.++.+++.+++++++++++|++....
T Consensus        81 ~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~v~~~~~~~  160 (660)
T PLN02861         81 KEVYDAAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKI  160 (660)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHcCCCCEEEECHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999987665


Q ss_pred             hhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCceeeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeec
Q 010536          161 PSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVL  240 (508)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~  240 (508)
                      ..+..........++.++.++..................+++++...........+..++++++|+|||||||.||||++
T Consensus       161 ~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~yTSGTTG~PKGV~l  240 (660)
T PLN02861        161 SSILSCLPKCSSNLKTIVSFGDVSSEQKEEAEELGVSCFSWEEFSLMGSLDCELPPKQKTDICTIMYTSGTTGEPKGVIL  240 (660)
T ss_pred             HHHHHhhhhCCCCCEEEEEECCCChhhhhhhhcCCcEEEEHHHHHHhCcccCCCCccCCCceEEEEecCCCCCCCCEEEE
Confidence            55444332222246667766543211111111112334577777654422222334567999999999999999999999


Q ss_pred             chHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEecCCHHhHHHHhhhhcCeEEEecc
Q 010536          241 TNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVP  320 (508)
Q Consensus       241 sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~i~~~~~t~~~~~P  320 (508)
                      ||++++..+......+.........+|++++.+|++|+++....+.+++.|+++++.++++..+++.|+++++|+++++|
T Consensus       241 th~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~i~~~~~T~~~~vP  320 (660)
T PLN02861        241 TNRAIIAEVLSTDHLLKVTDRVATEEDSYFSYLPLAHVYDQVIETYCISKGASIGFWQGDIRYLMEDVQALKPTIFCGVP  320 (660)
T ss_pred             ecHHHHHHHHHHHhccccccccCCCCCEEEEECcHHHHHHHHHHHHHHHhCCEEEEeCCCHHHHHHHHHHhCCcEEeech
Confidence            99999988877655431111124678999999999999998876678999999998888999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHH
Q 010536          321 RVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVE  400 (508)
Q Consensus       321 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~  400 (508)
                      .+|+.+.+.........+.+++++++++.+.+...+..+.......+..+.++++++++.+|.++|.+++||+++++++.
T Consensus       321 ~~~~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lg~~lr~~~~Ggapl~~~~~  400 (660)
T PLN02861        321 RVYDRIYTGIMQKISSGGMLRKKLFDFAYNYKLGNLRKGLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVE  400 (660)
T ss_pred             HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhcCCCCcCccHhHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHH
Confidence            99999999888888888999999999999998887776654444566788889999999999999999999999999986


Q ss_pred             HHHHHhcC-CceeeecccccCCcceeeccCCCCcccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccc
Q 010536          401 EFLRVTSG-APLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGY  479 (508)
Q Consensus       401 ~~~~~~~~-~~v~~~YG~TE~~~~~~~~~~~~~~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY  479 (508)
                      + |.+.++ ..+++.||+||+++.++..........+++|+|+|+++++|+|.++.+......++.|||+|+||+++.||
T Consensus       401 ~-~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~p~~ev~i~d~~~~g~~~~~~~~~GEi~vrGp~v~~GY  479 (660)
T PLN02861        401 E-FLRVTSCSVLSQGYGLTESCGGCFTSIANVFSMVGTVGVPMTTIEARLESVPEMGYDALSDVPRGEICLRGNTLFSGY  479 (660)
T ss_pred             H-HHHHHcCCCeeEecchhhhhhceeecccccCCCCCCccCccCceEEEEEEccccCcccCCCCCceeEEEcCCcccccc
Confidence            5 545555 47999999999987666544433334589999999999999984443322223446899999999999999


Q ss_pred             cCCcccccccccCCccccCcEEEEcCCCC
Q 010536          480 YKRPDLTEEVIVDGWFHTGDIGEWQPMEL  508 (508)
Q Consensus       480 ~~~~~~~~~~~~~gw~~TGDlg~~d~dG~  508 (508)
                      +++|+.+.+.|.+|||+|||+|++|+||+
T Consensus       480 ~~~pe~T~~~f~dGw~~TGDlg~~d~dG~  508 (660)
T PLN02861        480 HKRQDLTEEVLIDGWFHTGDIGEWQPNGA  508 (660)
T ss_pred             cCCHHHHHhhhhccCcccCceEEECCCCc
Confidence            99999999999999999999999999996

>PLN02614 long-chain acyl-CoA synthetase

Probab=100.00  E-value=1.1e-67  Score=559.28  Aligned_cols=492  Identities=56%  Similarity=1.018  Sum_probs=392.5

Q ss_pred             CCCCCCCCcccccccccCCCCCCCCCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHH
Q 010536           16 ADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMR   95 (508)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~   95 (508)
                      +++.|.++++||+......++.......|+.++|++.++++|+++|+.+....++..+.++.+||+||.++++++|++|.
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~   97 (666)
T PLN02614         18 SDGRPSVGPVYRSIFAKDGFPNPIEGMDSCWDVFRMSVEKYPNNPMLGRREIVDGKPGKYVWQTYQEVYDIVIKLGNSLR   97 (666)
T ss_pred             CCCCCCCCCcccCcccccccCCCCCCCCcHHHHHHHHHHhCCCCCeEEEecccCCCCCCcEEeEHHHHHHHHHHHHHHHH
Confidence            56778999999998877776654567789999999999999999999864110122244567999999999999999999


Q ss_pred             hCCCCCCCEEEEEcCCcHhHHHHHHHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCcc
Q 010536           96 SRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLK  175 (508)
Q Consensus        96 ~~gv~~gd~Vai~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~  175 (508)
                      ++|+++||+|+|+++|+++++++++||+++|+++|||++.++.+++.+++++++++++|++.+....+..........++
T Consensus        98 ~~Gv~~Gd~Vai~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~  177 (666)
T PLN02614         98 SVGVKDEAKCGIYGANSPEWIISMEACNAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMK  177 (666)
T ss_pred             HcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHhccCCCEEEECHHHHHHHHHhcccccccce
Confidence            99999999999999999999999999999999999999999999999999999999999987655544333322222356


Q ss_pred             EEEEecCCCchhhhhhhhcCceeeeHHHHHhcCC-CCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhh
Q 010536          176 TIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQ  254 (508)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~  254 (508)
                      .++.++.............+....+++++..... .........++++++|+|||||||.||||++||++++..+.....
T Consensus       178 ~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~I~yTSGTTG~PKGV~lth~nl~~~~~~~~~  257 (666)
T PLN02614        178 TVVSFGGVSREQKEEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIR  257 (666)
T ss_pred             EEEEeCCCChHHhhhhhhcCcEEEEHHHHHhhcccCCCCCCCCCCCceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHh
Confidence            6666643221110001111223457887765432 111222346789999999999999999999999999988776544


Q ss_pred             hhhhccccCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEecCCHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHh
Q 010536          255 MFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKI  334 (508)
Q Consensus       255 ~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~  334 (508)
                      .+......+..+|++++.+|++|.++....+.+++.|+++++.++++..+++.+++++||+++++|++|+.+.+.+....
T Consensus       258 ~~~~~~~~~~~~d~~l~~lPl~H~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~  337 (666)
T PLN02614        258 LLKSANAALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGDVKLLIEDLGELKPTIFCAVPRVLDRVYSGLQKKL  337 (666)
T ss_pred             hccccccCCCCCcEEEEeccHHHHHHHHHHHHHHHhCCEEEEeCCCHHHHHHHHHHhCCeEEEecHHHHHHHHHHHHHHH
Confidence            33111124678899999999999999876667788999999988899999999999999999999999999998887777


Q ss_pred             hcCChhHHHHHHHHHHHHhhhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhc-CCceee
Q 010536          335 SSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQ  413 (508)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~-~~~v~~  413 (508)
                      ...+.+++++++++.+.++..+..+.......+..+.+.++++++.+++++|.+++||+++++++.+ |.+.+ ++.+++
T Consensus       338 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~Gga~l~~~~~~-~~~~~~~~~i~~  416 (666)
T PLN02614        338 SDGGFLKKFVFDSAFSYKFGNMKKGQSHVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHVES-FLRVVACCHVLQ  416 (666)
T ss_pred             hccCHHHHHHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHH-HHHHhcCCCEEe
Confidence            7788888899999888877776665444445667788889999988888999999999999988654 55555 589999


Q ss_pred             ecccccCCcceeeccCCCCcccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccccCC
Q 010536          414 GYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDG  493 (508)
Q Consensus       414 ~YG~TE~~~~~~~~~~~~~~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~~~g  493 (508)
                      .||+||+++..+..........+++|+|+||++++|+|.++++..++..|+.|||+|+||+++.|||++|+.|.+.|.+|
T Consensus       417 ~YG~TE~~~~~~~~~~~~~~~~gsvG~p~pg~evki~d~~~~~~~~~~~g~~GEl~vrGp~v~~GY~~~pe~T~~~f~dG  496 (666)
T PLN02614        417 GYGLTESCAGTFVSLPDELDMLGTVGPPVPNVDIRLESVPEMEYDALASTPRGEICIRGKTLFSGYYKREDLTKEVLIDG  496 (666)
T ss_pred             eCchHhhhhheeeeccccCCcCCcccCcCCceEEEEeeecccCcccCCCCCCceEEEcCCcccccccCCHHHhhhhhccC
Confidence            99999998765554443333458999999999999998555433344456899999999999999999999999999999


Q ss_pred             ccccCcEEEEcCCCC
Q 010536          494 WFHTGDIGEWQPMEL  508 (508)
Q Consensus       494 w~~TGDlg~~d~dG~  508 (508)
                      ||+|||+|++|+||+
T Consensus       497 w~~TGDlg~~d~dG~  511 (666)
T PLN02614        497 WLHTGDVGEWQPNGS  511 (666)
T ss_pred             CcccceEEEEcCCCC
Confidence            999999999999996

>PLN02430 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=4.9e-65  Score=538.47  Aligned_cols=492  Identities=49%  Similarity=0.902  Sum_probs=400.2

Q ss_pred             CCCCCCCcccccccccCCCCCCCCCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHh
Q 010536           17 DGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRS   96 (508)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~   96 (508)
                      .++|.++++||+....+.++..+...+|+.++|.+.++++|+++|+.+....++..+.++.+||+|+.++++++|.+|.+
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~   95 (660)
T PLN02430         16 DGKPSVGPVYRNLLSKKGFPPIDSDITTAWDIFSKSVEKYPDNKMLGWRRIVDGKVGPYMWKTYKEVYEEVLQIGSALRA   95 (660)
T ss_pred             CCCCCCCCccccccccccccCCCCCCCCHHHHHHHHHHhCCCCceEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHH
Confidence            47888999999988777676556788999999999999999999997641112333456678999999999999999999


Q ss_pred             CCCCCCCEEEEEcCCcHhHHHHHHHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccE
Q 010536           97 RGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKT  176 (508)
Q Consensus        97 ~gv~~gd~Vai~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~  176 (508)
                      .|+++||+|+|+++|+++++++.+||+++|+++||+++.++.+++.++++.++++++|++.................++.
T Consensus        96 ~Gv~~gd~V~i~~~n~~ew~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~  175 (660)
T PLN02430         96 SGAEPGSRVGIYGSNCPQWIVAMEACAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKIKELLEPDCKSAKRLKA  175 (660)
T ss_pred             cCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEeccCCCHHHHHHHHhccCCCEEEECHHHHHHHHhhhcccCCCceE
Confidence            99999999999999999999999999999999999999999999999999999999999875433222222122345667


Q ss_pred             EEEecCCCchhhhhhhhcCceeeeHHHHHhcCC-CCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhh
Q 010536          177 IVSFANVSSSQKKEAEELGVSCFSWEEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQM  255 (508)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~  255 (508)
                      ++.++.............+....+|+++...+. .........++++++|+|||||||.||||++||+++...+......
T Consensus       176 ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~~~~~~~~~~~~~  255 (660)
T PLN02430        176 IVSFTSVTEEESDKASQIGVKTYSWIDFLHMGKENPSETNPPKPLDICTIMYTSGTSGDPKGVVLTHEAVATFVRGVDLF  255 (660)
T ss_pred             EEEECCCChHHhhhhhcCCcEEEEHHHHHHhhccCCCCCCCcCcCceEEEEECCCCCCCCCEEEeecHHHHHHHHHHHhh
Confidence            777654322111111112334567888876542 2222333467899999999999999999999999999887765432


Q ss_pred             hhhccccCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEecCCHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhh
Q 010536          256 FVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKIS  335 (508)
Q Consensus       256 ~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~  335 (508)
                      .......+..+|++++.+|++|.++....+.++..|+++++...++..+++.+++++||++.++|.+|+.+.+.......
T Consensus       256 ~~~~~~~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~i~~~~~~~~~l~~~l~~~~pt~~~~vP~~~~~l~~~i~~~~~  335 (660)
T PLN02430        256 MEQFEDKMTHDDVYLSFLPLAHILDRMIEEYFFRKGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFERIHEGIQKALQ  335 (660)
T ss_pred             ccccccCCCCCCEEEEeCcHHHHHHHHHHHHHHHcCCEEEEeCCChhhHHHHHHHhCCcEEEecHHHHHHHHHHHHHHHh
Confidence            21111245688999999999999998876778899999988877889999999999999999999999999998888888


Q ss_pred             cCChhHHHHHHHHHHHHhhhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeec
Q 010536          336 SGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGY  415 (508)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~Y  415 (508)
                      ..+..++.+++++...+...+..+.......+..+.+.++++++.+|+++|.+++||+++++++.++++...+..+++.|
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~i~~~~G~~lr~~~~gga~l~~~~~~~~~~~~~~~i~~~Y  415 (660)
T PLN02430        336 ELNPRRRLIFNALYKYKLAWMNRGYSHKKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIEEFLRVTSCAFVVQGY  415 (660)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCeEEEEEECCCCCCHHHHHHHHHhcCCCeeeec
Confidence            88889999999999999888776654444566778888999999999999999999999999998777665457899999


Q ss_pred             ccccCCcceeeccCCCCcccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccccCCcc
Q 010536          416 GLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWF  495 (508)
Q Consensus       416 G~TE~~~~~~~~~~~~~~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~~~gw~  495 (508)
                      |+||+++.++..........+++|+|.|++++++++.++.+..+.+.++.|||+|+||+++.||+++++.+.+.|.+|||
T Consensus       416 G~TE~~~~~~~~~~~~~~~~gsvG~p~~~~evki~d~~~~g~~~~~~~~~GEi~vrg~~v~~GY~~~~e~t~~~~~dGw~  495 (660)
T PLN02430        416 GLTETLGPTTLGFPDEMCMLGTVGAPAVYNELRLEEVPEMGYDPLGEPPRGEICVRGKCLFSGYYKNPELTEEVMKDGWF  495 (660)
T ss_pred             chhhhhhceEeeccccCCCCCCccCCCCceEEEEEEcCCcCcccCCCCCcceEEecCCCccccccCChHHhhhhhhccce
Confidence            99999887776655444445899999999999998855555455555578999999999999999999999999999999


Q ss_pred             ccCcEEEEcCCCC
Q 010536          496 HTGDIGEWQPMEL  508 (508)
Q Consensus       496 ~TGDlg~~d~dG~  508 (508)
                      +|||+|++|+||+
T Consensus       496 ~TGDig~~d~dG~  508 (660)
T PLN02430        496 HTGDIGEILPNGV  508 (660)
T ss_pred             eccceEEECCCCc
Confidence            9999999999995

>PLN02736 long-chain acyl-CoA synthetase

Probab=100.00  E-value=1.4e-64  Score=536.95  Aligned_cols=489  Identities=39%  Similarity=0.673  Sum_probs=395.4

Q ss_pred             ccccccCCCCCCCCCCCCCcccccccccCCCCC---CCCCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHH
Q 010536            5 YTVKVEEARPAADGKPSGGPVYRCIYAKDGLLE---SPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQ   81 (508)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~   81 (508)
                      |+++++...     +++.+.+||+......+.+   .++...++.++|++.++++|+++|+.+....++..+.++.+||+
T Consensus         8 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~lTy~   82 (651)
T PLN02736          8 YSVVLPEKL-----QTGKWNVYRSARSPLKLVSRFPDHPEIGTLHDNFVYAVETFRDYKYLGTRIRVDGTVGEYKWMTYG   82 (651)
T ss_pred             cceeCCCCC-----CCCCCCeecCccccccccccCCCCCCCCCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCcEEEEHH
Confidence            455555333     3478899998766655533   24667899999999999999999995431003333456789999


Q ss_pred             HHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHHHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChh
Q 010536           82 EVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP  161 (508)
Q Consensus        82 ~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~  161 (508)
                      ||.++++++|++|.++|+++||+|+|+++|+++++++++||+++|++++|+++.++.+++.+++++++++++|++.+...
T Consensus        83 el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~l~~~~~~~~  162 (651)
T PLN02736         83 EAGTARTAIGSGLVQHGIPKGACVGLYFINRPEWLIVDHACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQTLN  162 (651)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEeecCCCHHHHHHHHhccCCCEEEECHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999987666


Q ss_pred             hHhhcCccCCCCccEEEEecCCCchhhhhhhhcCceeeeHHHHHhcCC-CCCCCCCCCCCCeEEEEecCCCCCCcceeec
Q 010536          162 SILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGVVL  240 (508)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~  240 (508)
                      .+.+... ..+.++.++..+...................|+++..... .........++++++|+|||||||.||||++
T Consensus       163 ~~~~~~~-~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~IlyTSGTTG~PKGV~l  241 (651)
T PLN02736        163 TLLSCLS-EIPSVRLIVVVGGADEPLPSLPSGTGVEIVTYSKLLAQGRSSPQPFRPPKPEDVATICYTSGTTGTPKGVVL  241 (651)
T ss_pred             HHHHHhh-cCCCceEEEEECCCchhhhhhhccCCcEEEEHHHHHHhcccCCCCCCCCCccceEEEEEcCCCCCCCcEEEE
Confidence            6555433 2345666666543221111111112234567888776542 1222334567999999999999999999999


Q ss_pred             chHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEecCCHHhHHHHhhhhcCeEEEecc
Q 010536          241 TNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVP  320 (508)
Q Consensus       241 sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~i~~~~~t~~~~~P  320 (508)
                      ||++++.++......+     ....+|++++.+|++|.+++...+.+++.|+++++.++++..+++.++++++|+++++|
T Consensus       242 sh~~l~~~~~~~~~~~-----~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~i~~~~~~~~~~~~~i~~~~~t~~~~vP  316 (651)
T PLN02736        242 THGNLIANVAGSSLST-----KFYPSDVHISYLPLAHIYERVNQIVMLHYGVAVGFYQGDNLKLMDDLAALRPTIFCSVP  316 (651)
T ss_pred             ecHHHHHHHHHHHhcc-----CCCCCCEEEEeCCHHHHHHHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHhCCcEEecch
Confidence            9999999988876655     67789999999999999999888889999999999888899999999999999999999


Q ss_pred             hHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHH
Q 010536          321 RVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVE  400 (508)
Q Consensus       321 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~  400 (508)
                      .+|+.+.+.+.......+.+++++++++...+...+..+.   ...+..+.+.+++++..+++++|.+++||+++++++.
T Consensus       317 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~lg~~lr~~~~gGa~l~~~~~  393 (651)
T PLN02736        317 RLYNRIYDGITNAVKESGGLKERLFNAAYNAKKQALENGK---NPSPMWDRLVFNKIKAKLGGRVRFMSSGASPLSPDVM  393 (651)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHcCC---CCCchHHHHHHHHHHHHhcCcEEEEEeCCCCCCHHHH
Confidence            9999999988888888999999999998887765554432   2234567778888888888899999999999999999


Q ss_pred             HHHHHhcCCceeeecccccCCcceeeccCCCCcccCccccccCCeEEEEeecCCCCccC-CCCCCCCeEEEecCcccccc
Q 010536          401 EFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDA-LSSVPRGEICLRGNTLFSGY  479 (508)
Q Consensus       401 ~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~s~G~p~~~~~~~i~d~~~~~~~~-~~~~~~GEl~v~g~~v~~gY  479 (508)
                      +++++.+|..+++.||+||+++.++...... ...+++|+|+||++++|+|.+++.... ..+++.|||+|+||+++.||
T Consensus       394 ~~~~~~~g~~~~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~pg~~v~i~d~~~~~~~~~~~~~~~GEl~vrgp~v~~GY  472 (651)
T PLN02736        394 EFLRICFGGRVLEGYGMTETSCVISGMDEGD-NLSGHVGSPNPACEVKLVDVPEMNYTSEDQPYPRGEICVRGPIIFKGY  472 (651)
T ss_pred             HHHHHHhCCCeEEEechHHhchheeccCCCC-CCCCccCCccCceEEEEEEccccCcccCCCCCCCceEEecCCcccccc
Confidence            9999888999999999999987766554433 344899999999999999843322111 11235799999999999999


Q ss_pred             cCCcccccccc-cCCccccCcEEEEcCCCC
Q 010536          480 YKRPDLTEEVI-VDGWFHTGDIGEWQPMEL  508 (508)
Q Consensus       480 ~~~~~~~~~~~-~~gw~~TGDlg~~d~dG~  508 (508)
                      +++++.+.+.| .+|||+|||+|++|+||+
T Consensus       473 ~~~~~~t~~~~~~dgw~~TGDlg~~d~dG~  502 (651)
T PLN02736        473 YKDEVQTREVIDEDGWLHTGDIGLWLPGGR  502 (651)
T ss_pred             ccCHHHHHhhhccCCCeeccceEEEcCCCc
Confidence            99999999999 689999999999999995

>PTZ00342 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.3e-64  Score=534.48  Aligned_cols=471  Identities=25%  Similarity=0.427  Sum_probs=378.4

Q ss_pred             CCCCcccccccccCCCCCCCCCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhC--
Q 010536           20 PSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSR--   97 (508)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~--   97 (508)
                      .+++++||....++.  .......++.++|.++++++|+++|+++.   + .+..|+.+||+||.+++.++|.+|.++  
T Consensus        40 ~~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~~~~p~~~Al~~~---~-~g~~~~~~Ty~el~~~v~~~A~~L~~~~~  113 (746)
T PTZ00342         40 ENESSVYCMKDHKKK--SSLYVYKHIMKLLLEKYKLNNNKIAIVEH---S-CGEPQNYITYGNFFKKVLSFSHSLNTYEG  113 (746)
T ss_pred             CCCCCceecCchhhc--ccccccchHHHHHHHHHhhcCCceeEecc---C-CCCCceeeeHHHHHHHHHHHHHHHHHHhh
Confidence            467889998877766  23366889999999999999999999753   2 123467899999999999999999974  


Q ss_pred             -CCCCC-----------CEEEEEcCCcHhHHHHHHHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhh
Q 010536           98 -GVNPG-----------DRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILS  165 (508)
Q Consensus        98 -gv~~g-----------d~Vai~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~  165 (508)
                       |+++|           |+|+|+++|+++|+++.+||+++|+++||+++.++.+++.++|++++++++|++.+..+.+.+
T Consensus       114 ~Gv~~g~~~~~~~~g~~d~V~i~~~N~~ew~~~~lA~~~~Gav~Vpl~~~~~~~el~~il~~s~~~~lv~~~~~~~~l~~  193 (746)
T PTZ00342        114 KGIPEKKYNEEQNNGKFKLLGLYGSNSINWLVADLACMLSGVTTLVMHSKFSIDVIVDILNETKLEWLCLDLDLVEGLLE  193 (746)
T ss_pred             cCCCcCccccccccccccEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHhcCCCCEEEEcHHHHHHHHH
Confidence             99999           999999999999999999999999999999999999999999999999999998776666655


Q ss_pred             cCccCCCCccEEEEecCCCchh------------------h---------------------------------------
Q 010536          166 CLPRCCLYLKTIVSFANVSSSQ------------------K---------------------------------------  188 (508)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~------------------~---------------------------------------  188 (508)
                      ... .++.++.++.++......                  .                                       
T Consensus       194 ~~~-~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  272 (746)
T PTZ00342        194 RKN-ELPHLKKLIILDTLIKSKEININKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKDLK  272 (746)
T ss_pred             hhc-cCCCceEEEEECCCCcccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhHHHH
Confidence            433 345677888776421100                  0                                       


Q ss_pred             hhhhhcCceeeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcE
Q 010536          189 KEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDT  268 (508)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (508)
                      ......+.....++++..............++++++|+|||||||.||||++||+|+++.+.......   .......++
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~IiYTSGTTG~PKGVmlTH~nl~~~~~~~~~~~---~~~~~~~d~  349 (746)
T PTZ00342        273 EKAKKLGISIILFDDMTKNKTTNYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHS---IFKKYNPKT  349 (746)
T ss_pred             HHhhcCCCEEEEHHHHHhhcccCCCCCCCCccceEEEEEcCCCCCCCCEEEEccHHHHHHHHHHhhcc---cccCCCCCe
Confidence            00000112233455544332222223345679999999999999999999999999999887654321   001235589


Q ss_pred             EEEecChHHHHHHHHHHHHHHcCcEEEEecCCHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHH
Q 010536          269 YFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFA  348 (508)
Q Consensus       269 ~l~~~pl~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~  348 (508)
                      +++.+|++|++++...+.+++.|+++++.+.++..+++.|++++||+++++|.+|++|.+.+.......+..++++|+++
T Consensus       350 ~ls~LPL~Hi~~~~~~~~~l~~G~~i~~~~~~~~~l~~di~~~~pT~~~~VP~v~~~i~~~i~~~~~~~~~~~~~~~~~a  429 (746)
T PTZ00342        350 HLSYLPISHIYERVIAYLSFMLGGTINIWSKDINYFSKDIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLVKKI  429 (746)
T ss_pred             EEEeCcHHHHHHHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHhCCcEEEchHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence            99999999999998888899999999998879999999999999999999999999999988888888888899999999


Q ss_pred             HHHHhhhhhcCCCCCcchhhhHHH--HHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCcceee
Q 010536          349 YNYKLGNMKKGMPQNKAAPLLDSL--VFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFT  426 (508)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~  426 (508)
                      ...+..... +.    .....+.+  .++++++.+++++|.+++||+++++++.++|+..+|+.+++.||+||+++.++.
T Consensus       430 ~~~~~~~~~-~~----~~~~~~~~~~v~~kir~~lg~~lr~~~sGGapl~~~~~~~~~~~~g~~i~~gYGlTEt~~~~~~  504 (746)
T PTZ00342        430 LSLRKSNNN-GG----FSKFLEGITHISSKIKDKVNPNLEVILNGGGKLSPKIAEELSVLLNVNYYQGYGLTETTGPIFV  504 (746)
T ss_pred             HHHHHHhhc-CC----cchHHHHHHHHHHHHHHhhCCCeEEEEEcCCCCCHHHHHHHHHhcCCCEEEeeccCcccceeee
Confidence            988766433 21    12333333  578889999999999999999999999999999889999999999999877666


Q ss_pred             ccCCCCcccCcccccc-CCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccc-cCCccccCcEEEEc
Q 010536          427 SLADVFNMIGTVGVPM-TTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGDIGEWQ  504 (508)
Q Consensus       427 ~~~~~~~~~~s~G~p~-~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~-~~gw~~TGDlg~~d  504 (508)
                      ..... ...+++|+|+ |+++++|+|.++.....  .++.|||+++||+++.|||++|+.|.++| .||||+|||+|++|
T Consensus       505 ~~~~~-~~~gsvG~p~~pg~e~ki~d~~~~~~~~--~~~~GEl~vrGp~v~~GY~~~pe~T~~~f~~dGW~~TGDig~~d  581 (746)
T PTZ00342        505 QHADD-NNTESIGGPISPNTKYKVRTWETYKATD--TLPKGELLIKSDSIFSGYFLEKEQTKNAFTEDGYFKTGDIVQIN  581 (746)
T ss_pred             ccCCC-CCcccccCcCCCcEEEEEecccccccCC--CCCceEEEEecCcccccccCChhhhhhhcCcCCcccCCcEEEEC
Confidence            55443 3458999998 99999999844332222  22579999999999999999999999999 69999999999999


Q ss_pred             CCCC
Q 010536          505 PMEL  508 (508)
Q Consensus       505 ~dG~  508 (508)
                      +||+
T Consensus       582 ~dG~  585 (746)
T PTZ00342        582 KNGS  585 (746)
T ss_pred             CCCe
Confidence            9995

>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

Probab=100.00  E-value=4.1e-65  Score=513.06  Aligned_cols=442  Identities=33%  Similarity=0.598  Sum_probs=360.8

Q ss_pred             CCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHH
Q 010536           40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM  119 (508)
Q Consensus        40 ~~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~  119 (508)
                      ....++..++.+.++.+|+.+++...   .  .+.|+.+||+|+.+++.++|.+|.+.|++.||+|+|++.|+++|+++-
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~a~~~~---~--~~~~~~~ty~e~~~~v~~~a~gL~~lg~~~gdrvai~a~nr~eW~i~d   87 (613)
T COG1022          13 AEIHTLPKRLAERVKDRPDGVALMYK---E--LGGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIAD   87 (613)
T ss_pred             hhcccHHHHHHHHhhcCCcceeEeee---c--CCcceEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHH
Confidence            34588999999999999998888766   3  577899999999999999999999999977999999999999999999


Q ss_pred             HHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchh---hhhh-hh-c
Q 010536          120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQ---KKEA-EE-L  194 (508)
Q Consensus       120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~-~  194 (508)
                      +||+.+|++.||+.+..+++++.++|+.++++++|++..........+...++.+...+...+.....   .... .. .
T Consensus        88 ~a~~~~g~v~Vp~y~t~~~~~~~~iL~~se~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (613)
T COG1022          88 LAILALGAVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVIIDLVREAVEAKALVLEVFP  167 (613)
T ss_pred             HHHHHcCCeEEecCCCCCHHHHHHHHhcCCceEEEecchHHHHHHHhhhccccchhhhhhhhhhhhhccchhhccccccc
Confidence            99999999999999999999999999999999999998655544343333222221111111100000   0000 00 0


Q ss_pred             CceeeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhcccc-CCCCcEEEEec
Q 010536          195 GVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKV-CSEEDTYFSFL  273 (508)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~  273 (508)
                      ......+  ............+..++|+|.|+|||||||.||||++||+|+++++..+...+     . .+.+|++++++
T Consensus       168 ~~~~~~~--~~~~~~~~~~~~~~~~dDlatiiYTSGTTG~PKGVmLth~N~~~~v~~~~~~~-----~~~~~~d~~LsfL  240 (613)
T COG1022         168 DEGISLF--LIDSAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVL-----PPIGPGDRVLSFL  240 (613)
T ss_pred             cccchhh--hhcccccccccCCCCccceEEEEEcCCCCCCCceEEEehHHHHHHHHHHHhhC-----CCCCCCcEEEEeC
Confidence            0011111  11111112223466889999999999999999999999999999999988876     4 78999999999


Q ss_pred             ChHHHHHHHHHHHHHHcCcEEEEecCCHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHh
Q 010536          274 PLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKL  353 (508)
Q Consensus       274 pl~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (508)
                      |+.|++..++.......++..++...++..+++.+++++||+++++|.+|+.+.+....+....+..++++|+++...+.
T Consensus       241 PlaHi~Er~~~~~~~~~~g~~~~~~~~~~~~~~dl~~~rPt~m~~VPRvwE~i~~~I~~kv~~~~~~~~~if~~a~~~~~  320 (613)
T COG1022         241 PLAHIFERAFEGGLALYGGVTVLFKEDPRTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAY  320 (613)
T ss_pred             cHHHHHHHHHHHHHHhhcceEEEecCCHHHHHHHHHHhCCeEEeechHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence            99999999875544445555555556999999999999999999999999999999999999999999999999998875


Q ss_pred             hhhhcCCC---CCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCcceeeccCC
Q 010536          354 GNMKKGMP---QNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLAD  430 (508)
Q Consensus       354 ~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~  430 (508)
                      ....+...   ........+.+.++++++.+|.++|++++||+++++++..+++.. |+++.++||+||+++.++.++++
T Consensus       321 ~~~~~~~~~~~~~~~~~~~d~LVf~Kir~~lGgri~~~~sGGa~l~~~~~~f~~~l-Gi~i~eGYGlTEts~~~~v~~~~  399 (613)
T COG1022         321 KKISRALLGGGPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFRSL-GIPILEGYGLTETSAVVSVNPPD  399 (613)
T ss_pred             HHHHhhhcccCCcchhhhhhHHHHHHHHHHhCCcEEEEEecCCcCCHHHHHHHHHc-CCCeEEEecccccccceEEcccc
Confidence            53332111   111112388999999999999999999999999999999999986 89999999999999999988887


Q ss_pred             CCcccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccc-cCCccccCcEEEEcCCCC
Q 010536          431 VFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGDIGEWQPMEL  508 (508)
Q Consensus       431 ~~~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~-~~gw~~TGDlg~~d~dG~  508 (508)
                      .... +++|+|+|+++++|+|             .|||+||||+||.|||++|+.|.++| .||||+|||+|.+|++|+
T Consensus       400 ~~~~-gtvG~p~p~~evKI~d-------------~GEilVRG~~Vm~GYyk~pe~Taeaf~~DGWf~TGDlg~~d~~g~  464 (613)
T COG1022         400 RFVL-GTVGKPLPGIEVKIAD-------------DGEILVRGPNVMKGYYKNPEATAEAFTEDGWFRTGDLGELDEDGY  464 (613)
T ss_pred             Cccc-CCcCCcCCCceEEEcc-------------CceEEEecchhcchhcCChHHHhhhccccCCcccCceeEEcCCCc
Confidence            7666 9999999999999999             59999999999999999999999999 699999999999999986

>PLN02387 long-chain-fatty-acid-CoA ligase family protein

Probab=100.00  E-value=1.5e-61  Score=514.81  Aligned_cols=481  Identities=33%  Similarity=0.569  Sum_probs=380.8

Q ss_pred             CCcccccccccCCCCCCCCCCCCHHHHHHHHHHhCCCCCceeeeecc--------CC------CCCCceEeeHHHHHHHH
Q 010536           22 GGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVS--------DG------KVGPYVWLTYQEVYDAA   87 (508)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~ti~~~l~~~a~~~p~~~a~~~~~~~--------~~------~~~~~~~~Ty~~l~~~~   87 (508)
                      .+.+||+......+....++..|+.++|++.++.+||++|+.+....        ++      ..+.|+.+||+|+.+++
T Consensus        37 ~~~~~r~~~~~~~~~~~~~~~~t~~~l~~~~~~~~pd~~al~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~v  116 (696)
T PLN02387         37 PGYAIRNARFPELVETPWEGATTLAALFEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITYGQVFERV  116 (696)
T ss_pred             CCCceecCccccccccCCCCCCCHHHHHHHHHHHCCCCceEEEecccccccccccCCcccccccCCCcEEEEHHHHHHHH
Confidence            33359998855333333367789999999999999999999543100        11      12467789999999999


Q ss_pred             HHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHHHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcC
Q 010536           88 IRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCL  167 (508)
Q Consensus        88 ~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~  167 (508)
                      +++|++|.++|+++||+|+|+++|+++++++++||+++|+++|||++.++.+++.++|+.++++++|++.+....+....
T Consensus       117 ~~lA~~L~~lG~~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~li~~~~~~~~l~~~~  196 (696)
T PLN02387        117 CNFASGLVALGHNKEERVAIFADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEVTTVICDSKQLKKLIDIS  196 (696)
T ss_pred             HHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHccCCCEEEECHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999877666655443


Q ss_pred             ccCCCCccEEEEecCCCchhhhh-hhhcCceeeeHHHHHhcCCC-CCCCCCCCCCCeEEEEecCCCCCCcceeecchHHH
Q 010536          168 PRCCLYLKTIVSFANVSSSQKKE-AEELGVSCFSWEEFLQLGTL-DCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAI  245 (508)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~  245 (508)
                      . ..+.++.++.+++........ ..........|+++...+.. ........++++++|+|||||||.||||++||+++
T Consensus       197 ~-~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~I~yTSGTTG~PKGV~lth~~l  275 (696)
T PLN02387        197 S-QLETVKRVIYMDDEGVDSDSSLSGSSNWTVSSFSEVEKLGKENPVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNI  275 (696)
T ss_pred             h-ccCCceEEEEECCCCchhhhhhhccCCcEEEEHHHHHHhhccCCCCCCCCCccceEEEEecCCCCCCCCEEEEEcHHH
Confidence            2 335677788776543211100 01112345678877765421 22233446799999999999999999999999999


Q ss_pred             HHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEecC----C-----HHhHHHHhhhhcCeEE
Q 010536          246 VAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG----D-----VRYLMEDIQELKPTMF  316 (508)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~l~~G~~~~~~~~----~-----~~~~~~~i~~~~~t~~  316 (508)
                      ++++......+    ..+..+|++++++|++|++++...+.++..|+++.+...    +     ...++..++++++|++
T Consensus       276 ~~~~~~~~~~~----~~~~~~d~~l~~lPl~Hi~~~~~~~~~~~~g~~i~~g~~~~l~~~~~~~~~~~~~~i~~~~pT~~  351 (696)
T PLN02387        276 VATVAGVMTVV----PKLGKNDVYLAYLPLAHILELAAESVMAAVGAAIGYGSPLTLTDTSNKIKKGTKGDASALKPTLM  351 (696)
T ss_pred             HHHHHHHHhhc----CCCCCCCEEEEECcHHHHHHHHHHHHHHHhCCEEEECChhhhcccccccccCchhhHHHhCCcEE
Confidence            98887765432    146788999999999999999877777788887765322    1     2345678999999999


Q ss_pred             EecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhcCCC--CCcchhhhHHHHHHHHHHHhCCcEEEEEEecCC
Q 010536          317 SGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMP--QNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAP  394 (508)
Q Consensus       317 ~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~  394 (508)
                      .++|.+++++.+.........+.+.+.+++++...+........+  ....+..++.+.++++++.+|+++|.+++||++
T Consensus       352 ~~vP~~l~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~i~~GGap  431 (696)
T PLN02387        352 TAVPAILDRVRDGVRKKVDAKGGLAKKLFDIAYKRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLGGRIRFMLSGGAP  431 (696)
T ss_pred             EehhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhccCCcccccccchhhHHHHHHHHHHHhCCcEEEEEEcCCC
Confidence            999999999998887777788888999999998877665432111  123456788899999999999999999999999


Q ss_pred             CCHHHHHHHHHhcCCceeeecccccCCcceeeccCCCCcccCccccccCCeEEEEeecCCCCccCC-CCCCCCeEEEecC
Q 010536          395 LPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDAL-SSVPRGEICLRGN  473 (508)
Q Consensus       395 ~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~s~G~p~~~~~~~i~d~~~~~~~~~-~~~~~GEl~v~g~  473 (508)
                      +++++.++++..+|+.+++.||+||+++.++....... ..+++|+|+|+++++|+|.++++.... .+++.|||+|+||
T Consensus       432 l~~~~~~~~~~~~g~~v~~~YG~TEt~~~~~~~~~~~~-~~gsvG~p~p~~evkivd~~~~~~~~~~~~~p~GEi~vrGp  510 (696)
T PLN02387        432 LSGDTQRFINICLGAPIGQGYGLTETCAGATFSEWDDT-SVGRVGPPLPCCYVKLVSWEEGGYLISDKPMPRGEIVIGGP  510 (696)
T ss_pred             CCHHHHHHHHHHcCCCeeEeechhhcccceeecCcccC-CCCccCCCCCceEEEEeeccccCcccCCCCCCCceEEeccC
Confidence            99999998888889999999999999877766554433 348999999999999999555543322 2335799999999


Q ss_pred             cccccccCCccccccccc---CC--ccccCcEEEEcCCCC
Q 010536          474 TLFSGYYKRPDLTEEVIV---DG--WFHTGDIGEWQPMEL  508 (508)
Q Consensus       474 ~v~~gY~~~~~~~~~~~~---~g--w~~TGDlg~~d~dG~  508 (508)
                      +++.|||++|+.+.+.|.   +|  ||+|||+|++|+||+
T Consensus       511 ~v~~GY~~~pe~T~~~f~~d~~G~~W~~TGDig~~d~dG~  550 (696)
T PLN02387        511 SVTLGYFKNQEKTDEVYKVDERGMRWFYTGDIGQFHPDGC  550 (696)
T ss_pred             cccchhcCCHHHHhhhhccccCCCceeecCceEEECCCCc
Confidence            999999999999999982   35  999999999999996

>KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=3.4e-62  Score=462.76  Aligned_cols=492  Identities=36%  Similarity=0.629  Sum_probs=420.8

Q ss_pred             CcccccccCCCCCCCCCCCCCcccccccccCCCCCCC-CCCCCHHHHHHHHHHhCCCCCceeeeecc--------CCC--
Q 010536            3 ETYTVKVEEARPAADGKPSGGPVYRCIYAKDGLLESP-AGLESPWQFFCDSAKRIPNNQMLGGRKVS--------DGK--   71 (508)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ti~~~l~~~a~~~p~~~a~~~~~~~--------~~~--   71 (508)
                      +-++++..+..     .+.++..||+....+++.+.+ ++..|+++++++..+++.++.++-+++..        |++  
T Consensus         5 ~~~~V~~~~~~-----n~~e~~p~Rnv~~~~~L~~~~~~g~~Tl~~~~~~~~~k~g~~~~mGtR~li~~h~ek~~dGK~f   79 (678)
T KOG1180|consen    5 KKYRVKAKPAA-----NEHETAPYRNVRSFDGLVSPPNPGASTLYELFEECVKKFGKKDAMGTRELIKEHEEKQVDGKTF   79 (678)
T ss_pred             hhcccccCCCC-----CCCCCccccccccCCCccCCCCCCcccHHHHHHHHHHhcCCCccccHHHHHHHHhhccCCCeEE
Confidence            33455555442     346899999999888787777 78999999999999999999999766442        221  


Q ss_pred             ----CCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCE-EEEEcCCcHhHHHHHHHHHHcCCEEEeccCCCCHHHHHHHHH
Q 010536           72 ----VGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDR-CGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIIN  146 (508)
Q Consensus        72 ----~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~-Vai~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~  146 (508)
                          -+.+..+||.|+.+++.++|.+|.+.|++++++ ++|..+.+.+|.++++||++.+.++|-+...+..+.+.+-|+
T Consensus        80 ~k~~Lg~Y~w~sy~ev~~~~~~~gsGL~~lG~k~~e~k~~iFa~TraeWm~ta~gC~~q~ipvVT~Y~TLGeeal~hsl~  159 (678)
T KOG1180|consen   80 EKYELGDYKWMSYNEVYERVHNFGSGLVKLGLKPKETKIAIFAETRAEWMITAQGCFSQNIPVVTAYATLGEEALIHSLN  159 (678)
T ss_pred             EEEeccceeeecHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecchHHHHHHHHHHHhcCCeEEEEehhcChhhhhhhhc
Confidence                346678999999999999999999999997777 999999999999999999999999999999999999999999


Q ss_pred             hcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhh----hhcCceeeeHHHHHhcC-CCCCCCCCCCCCC
Q 010536          147 HAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEA----EELGVSCFSWEEFLQLG-TLDCELPPKKKTN  221 (508)
Q Consensus       147 ~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  221 (508)
                      .++++.+|++.+.+..+...+. ....++.+|.++..+.......    ......+++++++.+.+ ....++.+..++|
T Consensus       160 Et~~~~i~T~~~LL~kl~~~l~-~~~~vk~II~~d~id~~~~~~~v~~i~~p~i~i~Sf~~v~~lG~~~~~~~~~P~p~D  238 (678)
T KOG1180|consen  160 ETESTAIFTDSELLPKLKAPLK-QAKTVKHIIYFDPIDYDAAKDDVNSIVRPDIKIISFDDVEKLGKENEIPPHPPKPSD  238 (678)
T ss_pred             cccceEEEeCHHHHHHHHHHHh-ccCceeEEEEecCCCCccchhhhhhhccCCeEEEEHHHHHhhCCcCCCCCCCCCCCc
Confidence            9999999999998886655443 4578899999986443322222    22357889999999988 3334455558899


Q ss_pred             eEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEecC--
Q 010536          222 ISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG--  299 (508)
Q Consensus       222 ~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~l~~G~~~~~~~~--  299 (508)
                      +|+|+|||||||.||||+++|.|+++.+..+....    ..+.+.|+++.++||.|++.+.+-+.+++.|+.+-..+.  
T Consensus       239 ia~IMYTSGSTG~PKGVml~H~NiVA~~~G~~~~v----~~lg~~D~yi~yLPLAHIlEl~aE~~~ft~G~~iGY~S~~T  314 (678)
T KOG1180|consen  239 IACIMYTSGSTGLPKGVMLTHSNIVAGVTGVGENV----PELGPKDRYIAYLPLAHILELTAELVCFTWGGRIGYSSPLT  314 (678)
T ss_pred             eEEEEEcCCCCCCCceEEEecccHHhhhhhhcccC----cccCCCceEEEechHHHHHHHHHHHHHHhhCCEeecCCcce
Confidence            99999999999999999999999999999876654    267899999999999999999999999999998866442  


Q ss_pred             ---CHHh----HHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhcCCCCCcchhhhHHH
Q 010536          300 ---DVRY----LMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSL  372 (508)
Q Consensus       300 ---~~~~----~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (508)
                         ....    --..+...+||++.++|++|+++.+.+..+....+.+++++|.+++..++..+..-   -...+.++.+
T Consensus       315 Ltdts~ki~kg~kGD~~~lkPTiM~~VpAV~drVrKgVl~kV~~~~~~~k~lF~~aY~~K~~~~~~~---g~~s~~ld~l  391 (678)
T KOG1180|consen  315 LTDTSSKIKKGCKGDLTELKPTIMAAVPAVMDRVRKGVLSKVNAMPGLQKKLFWTAYERKLSLIERN---GPGSPLLDAL  391 (678)
T ss_pred             ecccchhhccCCcCccccccchhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhcc---CCchhhHHHH
Confidence               1112    22235578999999999999999999999999999999999999999988887731   2346789999


Q ss_pred             HHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCcceeeccCCCCcccCccccccCCeEEEEeec
Q 010536          373 VFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESV  452 (508)
Q Consensus       373 ~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~s~G~p~~~~~~~i~d~  452 (508)
                      .|.++|..+|.+||++++||+|++++..+++.-.+.+++.++||.||+++..+...+++... +.+|.|++-++++++|.
T Consensus       392 VFkKIr~~lGG~lR~~LsGGapLS~dtQrF~nic~C~Pv~qGYGLTEtca~~tv~e~~d~~~-g~vG~pl~c~eiKLvdw  470 (678)
T KOG1180|consen  392 VFKKIRALLGGNLRYILSGGAPLSPDTQRFMNICFCCPVLQGYGLTETCAAATVLEPEDFST-GRVGAPLPCCEIKLVDW  470 (678)
T ss_pred             HHHHHHHHhCCceEEEEeCCCCCCHHHHHHHHHhccccccccccccchhcccEecChhhccc-ccccCCccceEEEEEEh
Confidence            99999999999999999999999999999999999999999999999999988887777666 89999999999999999


Q ss_pred             CCCCccCCCCCCCCeEEEecCcccccccCCcccccccc--cCC--ccccCcEEEEcCCCC
Q 010536          453 PEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI--VDG--WFHTGDIGEWQPMEL  508 (508)
Q Consensus       453 ~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~--~~g--w~~TGDlg~~d~dG~  508 (508)
                      +|++..+...-..|||+|+|++|..||++|++.|++.|  .||  ||+|||+|.+.+||.
T Consensus       471 ~EgGY~~~~~PPrGEI~i~G~~vt~gY~kn~ekT~e~ft~~~G~~WF~TGDIGe~~pdG~  530 (678)
T KOG1180|consen  471 EEGGYFAKNKPPRGEILIGGPNVTMGYYKNEEKTKEDFTVEDGQRWFRTGDIGEFHPDGC  530 (678)
T ss_pred             hhcCccCCCCCCCceEEecCCccChhhhCChhhhhhhceecCCcEEEeccccceecCCCc
Confidence            99998776644689999999999999999999999999  488  999999999999983

>PTZ00216 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.7e-60  Score=508.00  Aligned_cols=478  Identities=31%  Similarity=0.524  Sum_probs=374.3

Q ss_pred             CCCCCCcccccccccC----CCCCCCCCCCCHHHHHHHHHHhCCCCCceeeeecc----------CCC--------CCCc
Q 010536           18 GKPSGGPVYRCIYAKD----GLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVS----------DGK--------VGPY   75 (508)
Q Consensus        18 ~~~~~~~~~~~~~~~~----~~~~~~~~~~ti~~~l~~~a~~~p~~~a~~~~~~~----------~~~--------~~~~   75 (508)
                      .++..+++||.....+    .+....+...|+.++|.++++++|+++|+.+....          ++.        .+.+
T Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~p~~~a~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (700)
T PTZ00216         40 ETENASAIYRIAGVTDEEHERLRNEWYYGPNFLQRLERICKERGDRRALAYRPVERVEKEVVKDADGKERTMEVTHFNET  119 (700)
T ss_pred             CCCCCCCcccCcccccchhcccccccCCCCCHHHHHHHHHHhCCCCCeEEEeccccccccccccCCCccccccccccCCc
Confidence            3445678888765443    22222245679999999999999999999875100          111        1246


Q ss_pred             eEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHHHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEE
Q 010536           76 VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFV  155 (508)
Q Consensus        76 ~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~  155 (508)
                      +.+||+||.++++++|.+|.++|+++||+|+|+++|+++++++++||+++|++++|+++.++.+++.+++++++++++|+
T Consensus       120 ~~lTy~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~lv~  199 (700)
T PTZ00216        120 RYITYAELWERIVNFGRGLAELGLTKGSNVAIYEETRWEWLASIYGIWSQSMVAATVYANLGEDALAYALRETECKAIVC  199 (700)
T ss_pred             eEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEeeCCCCCHHHHHhhhhccCccEEEE
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCceeeeHHHHHhcCC--C-C-CCCCCCCCCCeEEEEecCCC
Q 010536          156 QENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGT--L-D-CELPPKKKTNISTIMYTSGT  231 (508)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~-~~~~~~~~~~~~~i~~TSGT  231 (508)
                      +......+.............++.++.....    .........+|+++...+.  . . ....+..++++++|+|||||
T Consensus       200 ~~~~~~~l~~~~~~~~~~~~~ii~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGT  275 (700)
T PTZ00216        200 NGKNVPNLLRLMKSGGMPNTTIIYLDSLPAS----VDTEGCRLVAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGT  275 (700)
T ss_pred             CHHHHHHHHHhhhhccCCceEEEEECCCccc----cccCCceEEEHHHHHHhCCccccccccCCCCCcccEEEEEEeCCC
Confidence            8765554443332211112245555432111    0112334667888876541  1 1 11233467899999999999


Q ss_pred             CCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEecCCHHhHHH-----
Q 010536          232 TGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLME-----  306 (508)
Q Consensus       232 TG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~-----  306 (508)
                      ||.||||++||+++++.+......+.........++++++.+|++|.++.......+..|+.+.+  .++..+++     
T Consensus       276 TG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~v~~--~~~~~l~~~~~~~  353 (700)
T PTZ00216        276 TGDPKGVMHTHGSLTAGILALEDRLNDLIGPPEEDETYCSYLPLAHIMEFGVTNIFLARGALIGF--GSPRTLTDTFARP  353 (700)
T ss_pred             CCcCcEEEEEhHHHHHHHHHHHhhcccccCCCCCCCEEEEEChHHHHHHHHHHHHHHHcCCEEEE--CCHHHhhhhhccc
Confidence            99999999999999998877654431111123678999999999999998776667788887765  24555554     


Q ss_pred             --HhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhcCCCCCcchhhhHHHHHHHHHHHhCCc
Q 010536          307 --DIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGR  384 (508)
Q Consensus       307 --~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  384 (508)
                        .++++++|++.++|.+|+.+.+.........+.+++++++++...++.....+.    ..+..+.+.++++++.+|++
T Consensus       354 ~~~l~~~~pT~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~v~~~~~~~~g~~  429 (700)
T PTZ00216        354 HGDLTEFRPVFLIGVPRIFDTIKKAVEAKLPPVGSLKRRVFDHAYQSRLRALKEGK----DTPYWNEKVFSAPRAVLGGR  429 (700)
T ss_pred             cchHHHcCCcEEEechHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHcCC----CCchHHHHHHHHHHHHhCCc
Confidence              688999999999999999999988888888888999999999888877665432    23467788899999989899


Q ss_pred             EEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCcceeeccCCCCcccCccccccCCeEEEEeecCCCCccCCCCCC
Q 010536          385 LQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVP  464 (508)
Q Consensus       385 l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~  464 (508)
                      +|.+++||+++++++.++++..++ .+++.||+||+++.++...... ...+++|+|+||++++|+| +++......+++
T Consensus       430 lr~i~~GGa~l~~~~~~~~~~~~~-~l~~~YG~TEt~~~~~~~~~~~-~~~~svG~p~~g~evkI~d-~~~~~~~~~~~~  506 (700)
T PTZ00216        430 VRAMLSGGGPLSAATQEFVNVVFG-MVIQGWGLTETVCCGGIQRTGD-LEPNAVGQLLKGVEMKLLD-TEEYKHTDTPEP  506 (700)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhh-hHhhccCcccccccccccCCCC-CCCCCcCCcCCCeEEEEee-chhhccCCCCCC
Confidence            999999999999999998888778 9999999999987666554433 3348999999999999999 554322333446


Q ss_pred             CCeEEEecCcccccccCCcccccccc-cCCccccCcEEEEcCCCC
Q 010536          465 RGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGDIGEWQPMEL  508 (508)
Q Consensus       465 ~GEl~v~g~~v~~gY~~~~~~~~~~~-~~gw~~TGDlg~~d~dG~  508 (508)
                      .|||+|+|++++.||+++|+.+.+.| .+|||+|||+|++|+||+
T Consensus       507 ~GEL~vrG~~v~~GY~~~pe~T~~~f~~dGw~~TGDig~~d~dG~  551 (700)
T PTZ00216        507 RGEILLRGPFLFKGYYKQEELTREVLDEDGWFHTGDVGSIAANGT  551 (700)
T ss_pred             CceEEEcCCcccchhcCChhHhhhhccccCCeeccceEEEcCCCc
Confidence            89999999999999999999999999 789999999999999995

>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=1.4e-59  Score=469.50  Aligned_cols=393  Identities=28%  Similarity=0.402  Sum_probs=319.4

Q ss_pred             HHHHHhCCCC-CceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCC--CCCCCEEEEEcCCcHhHHHHHHHHHHcC
Q 010536           50 CDSAKRIPNN-QMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRG--VNPGDRCGIYGSNCPEWIIAMEACNSQA  126 (508)
Q Consensus        50 ~~~a~~~p~~-~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~g--v~~gd~Vai~~~n~~~~~~~~lA~~~~G  126 (508)
                      .+.+..++++ +.+++.   +..   .+.+||.|+.+++.++|.+|.++|  +++||+|++++||+++++++++||+..|
T Consensus        23 ~~~~~~~~~~~~~~i~~---~~~---g~~~T~~e~~~~~~r~A~~L~~~~~~i~~gDvV~i~~pNs~~~~~~~la~~~~G   96 (537)
T KOG1176|consen   23 GRPAFVYLDRNTSLVYQ---DSD---GRELTYSELHDRCRRLASALSELGLGIKKGDVVGILAPNTPEFVELALAVPMAG   96 (537)
T ss_pred             cccccccccCcceEEEe---cCC---CcEEcHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEEcCCCHHHHHHHHHHHHcC
Confidence            3334344444 677665   321   168999999999999999999875  8999999999999999999999999999


Q ss_pred             CEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCceeee-HHHHH
Q 010536          127 ITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFS-WEEFL  205 (508)
Q Consensus       127 ~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  205 (508)
                      +++.++||.+...++.+.++.++++++|++......+.+......   ..++.+.........   ........ +..+.
T Consensus        97 a~~~~~Np~~~~~ei~~~~~~s~~kiif~d~~~~~~i~~~~~~~~---~~i~~l~~~~~~~~~---~~~~~~~~~~~~~~  170 (537)
T KOG1176|consen   97 AVLNPLNPRLTASEIAKQLKDSKPKLIFVDEDFYDKISEATSKLA---LKIIVLTGDEGVISI---SDLVEDLDAFEDLM  170 (537)
T ss_pred             ccccccCcccCHHHHHHHHHhcCCeEEEEcCchHHHHHHHHhhcC---CceEEEecccCcccc---ccccccccchhhcc
Confidence            999999999999999999999999999999999988866654322   344444332110000   00011112 44444


Q ss_pred             hcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHH
Q 010536          206 QLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIET  285 (508)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~  285 (508)
                      ....... ..+.+.++++.++|||||||.||||++||++++.+........     .....++.++.+|++|.+|+...+
T Consensus       171 ~~~~~~~-~~~~~~dd~~~il~SSGTTg~PKgV~lsHr~~~~~~~~~~~~~-----~~~~~~v~l~~lPl~H~~Gl~~~~  244 (537)
T KOG1176|consen  171 PEGLPDG-IRPVSEDDTAAILYSSGTTGLPKGVVLSHRNLIANTLSIKIGW-----ELTSDDVYLCTLPLFHIYGLITLL  244 (537)
T ss_pred             ccCCCcc-cccCCCCCeEEEecCCCCCCCCceEEEecHHHHHHHHHhhhcc-----cCCCCceEEEechHHHHhHHHHHH
Confidence            4432222 5566789999999999999999999999999999987755444     667799999999999999999866


Q ss_pred             H-HHHcCcEEEEecC-CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhcCCCCC
Q 010536          286 H-CIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQN  363 (508)
Q Consensus       286 ~-~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (508)
                      . .+..|.++++.+. +++.+++.+++|++|+++++|.++..|++                                   
T Consensus       245 ~~~~~~~~~ii~~~~f~~~~~~~~i~kykvt~~~~vP~~~~~l~~-----------------------------------  289 (537)
T KOG1176|consen  245 LSLLAGGTTIICLRKFDAELFLDLIEKYKVTHLFLVPPVLNMLAK-----------------------------------  289 (537)
T ss_pred             HHHHhCCceEEECCCCCHHHHHHHHHHhCEEEEEcChHHHHHHhc-----------------------------------
Confidence            6 5666666777665 99999999999999999999999999876                                   


Q ss_pred             cchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcC-CceeeecccccCCcceeeccCCCCcccCcccccc
Q 010536          364 KAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG-APLTQGYGLTESCSGCFTSLADVFNMIGTVGVPM  442 (508)
Q Consensus       364 ~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~-~~v~~~YG~TE~~~~~~~~~~~~~~~~~s~G~p~  442 (508)
                        .+.....+++        +++.+++||+++++++.+++++.++ ..+.++||+||+++.++.+......+++|+|+++
T Consensus       290 --~p~~~~~~l~--------sl~~v~~gga~~~~~~~~~~~~~l~~~~v~q~YGmTE~~~~~~~~~~~~e~k~~svG~~~  359 (537)
T KOG1176|consen  290 --SPIVKKYDLS--------SLRSVLSGGAPLSPATLEKVKERLPNVTVIQGYGMTEAGGLITSNDWGPERKPGSVGRLL  359 (537)
T ss_pred             --CCccCcccCC--------ccEEEEecCCCCCHHHHHHHHHhCCCceEEEeeccccccCceeecCCCccCcccccCccc
Confidence              2234444554        9999999999999999999999998 8999999999999888877666555669999999


Q ss_pred             CCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccccC-CccccCcEEEEcCCCC
Q 010536          443 TTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVD-GWFHTGDIGEWQPMEL  508 (508)
Q Consensus       443 ~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~~~-gw~~TGDlg~~d~dG~  508 (508)
                      ++.+.+|.+ +.|...+.  ++.||||++|++++.||++||+.|++.|.+ |||+|||+|++|+|||
T Consensus       360 ~g~~~~v~~-e~g~~l~~--~~~GEI~vrg~~imkGY~~NpeaT~~~~~~~GW~~TGDiGy~D~DG~  423 (537)
T KOG1176|consen  360 PGVRVKVLD-ETGVSLGP--NQTGEICVRGPQVMKGYLKNPEATKEAFDDDGWFHTGDLGYFDEDGY  423 (537)
T ss_pred             cceEEEeeC-CCCCCCCC--CCceEEEEECcccchhhcCChHHHHhhcccCCccccCceEEEcCCCe
Confidence            999999998 77766554  489999999999999999999999999955 9999999999999996

>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]

Probab=100.00  E-value=2.1e-59  Score=436.75  Aligned_cols=411  Identities=22%  Similarity=0.318  Sum_probs=350.0

Q ss_pred             ccccCCCCCCCCCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEE
Q 010536           29 IYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIY  108 (508)
Q Consensus        29 ~~~~~~~~~~~~~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~  108 (508)
                      +...++..+.|....|+.+.++..+++-||+.|+++.   ...    ..+||+|+.+.++.+|++|..+|+++||+|.+.
T Consensus        36 ~~~~~g~~~ipl~~~Tigq~l~~~t~~v~dkea~Vf~---~eg----~R~Tf~~~~~ev~slAaGll~lGL~kGDrVgvw  108 (596)
T KOG1177|consen   36 HRYVHGCSQIPLDSETIGQLLETTTERVPDKEAAVFD---HEG----IRLTFSEFVSEVESLAAGLLSLGLKKGDRVGVW  108 (596)
T ss_pred             ccccCCCCCCCcccccHHHHHHHHhhccCcceEEEEe---ecc----chhhHHHHHHHHHHHHhhHHhhcCCCCCEEEEe
Confidence            3355777788889999999999999999999999987   221    359999999999999999999999999999999


Q ss_pred             cCCcHhHHHHHHHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChh-----hHhhc------------CccCC
Q 010536          109 GSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP-----SILSC------------LPRCC  171 (508)
Q Consensus       109 ~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-----~~~~~------------~~~~~  171 (508)
                      .||+.+|+..++||.++|.+.+++||.+..++++..|+..+++++|+...+..     .+++.            ..+.+
T Consensus       109 gpN~~~w~l~~lA~A~AG~v~v~~NP~Yq~~elr~~L~k~~~k~l~~p~~~k~~ny~~~l~~icPEv~~~~~G~lkS~~l  188 (596)
T KOG1177|consen  109 GPNSYEWVLCQLACARAGLVLVNLNPAYQSEELRYVLKKVGCKALFAPPQFKTQNYYETLLEICPEVMRGDPGQLKSELL  188 (596)
T ss_pred             cCChHHHHHHHHHHHHhceEEeccCcccccHHHHHHHhhcCeEEEEccchhhhchHHHHHHHhhHHhhcCCCcccccccc
Confidence            99999999999999999999999999999999999999999999999875322     12222            12455


Q ss_pred             CCccEEEEecCCCchhhhhhhhcCceeeeHHHHHhcCCCC------CCCCCCCCCCeEEEEecCCCCCCcceeecchHHH
Q 010536          172 LYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLD------CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAI  245 (508)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~  245 (508)
                      +.+.+++..++....         .+.+.+++++.....+      .......+++.+.|.|||||||.|||+.+||.++
T Consensus       189 p~lthvi~~~ed~~~---------~Ga~~~sev~~~~s~~~~a~l~~~~k~~~pdd~~niQFTSGTTG~PKgatLsH~~~  259 (596)
T KOG1177|consen  189 PELTHVILADEDHPL---------PGAFLLSEVLKAASKEERAKLADMSKWLSPDDAVNIQFTSGTTGAPKGATLSHYNF  259 (596)
T ss_pred             ccceEEEecCCCCcC---------CCceehHHHHHhcchHHHHHHHhhhhhcCCCCceEEEeccCCCCCCcceeeehhhh
Confidence            677777777633321         2345566666555221      1122346799999999999999999999999999


Q ss_pred             HHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHH-HHHHHHHcCcEEEEec--CCHHhHHHHhhhhcCeEEEecchH
Q 010536          246 VAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQI-IETHCIHKGCSIGFWR--GDVRYLMEDIQELKPTMFSGVPRV  322 (508)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~-~~~~~l~~G~~~~~~~--~~~~~~~~~i~~~~~t~~~~~P~~  322 (508)
                      +++.......+     ++..++++.+..|++|.+|.. ..++++..|++++++.  +++.+.+++|.++++|.++++|++
T Consensus       260 ~Nna~~vg~r~-----g~~e~~~i~~~~Pl~H~~G~~~~~ma~l~~gat~Vfp~~~f~~k~alqai~~ekcT~l~gtPtM  334 (596)
T KOG1177|consen  260 LNNARAVGARA-----GYNEKHRICIPNPLYHCFGCVLGVMAALMHGATIVFPAPSFDPKDALQAISNEKCTTLYGTPTM  334 (596)
T ss_pred             hhhHHHHHHHh-----CcCcceEEEecCchHHHHHHHHHHHHHHHhCcEEEeeCCCCChHHHHHHHHhhceEEEecChHH
Confidence            99999998887     777889999999999999976 5889999999999975  499999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHH
Q 010536          323 YDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEF  402 (508)
Q Consensus       323 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~  402 (508)
                      |..|++                                     .+.....+++        ++|.++.||+++++++++.
T Consensus       335 ~~Dlln-------------------------------------~~~~~~~~~s--------~lr~~vigGa~~s~eLlk~  369 (596)
T KOG1177|consen  335 FVDLLN-------------------------------------IPQKQQVDLS--------SLRKGVIGGAPVSPELLKL  369 (596)
T ss_pred             HHHHhc-------------------------------------chhhccCchh--------hhhhheeCCCCCCHHHHHH
Confidence            999986                                     3334444555        8899999999999999999


Q ss_pred             HHHhcCC-ceeeecccccCCcceeeccCCC--CcccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccc
Q 010536          403 LRVTSGA-PLTQGYGLTESCSGCFTSLADV--FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGY  479 (508)
Q Consensus       403 ~~~~~~~-~v~~~YG~TE~~~~~~~~~~~~--~~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY  479 (508)
                      +.+..++ .+..+||+||++.+.++...++  .....|+|+.+++.+..|+| .+|...+.+  ..|||++||++++.||
T Consensus       370 iv~~~~m~~i~v~YG~TEts~v~~~~~~~D~~~~~~ksVG~~m~h~Ea~iv~-~~g~~v~~~--~~Gel~iRGY~tMl~Y  446 (596)
T KOG1177|consen  370 IVNQMNMKDIAVAYGLTETSPVLFMSLLGDPPEERIKSVGHLMDHYEAAIVD-KDGSEVPLG--TKGELLIRGYSTMLGY  446 (596)
T ss_pred             HHHhhCceeeEEEeeccccCcceeeecCCCCHHHHHhhhhhccccccccccc-CCCCccccC--CCceEEEEechhheee
Confidence            9987765 5888999999998888777665  34457999999999999999 999988887  6799999999999999


Q ss_pred             cCCcccccccc-cCCccccCcEEEEcCCCC
Q 010536          480 YKRPDLTEEVI-VDGWFHTGDIGEWQPMEL  508 (508)
Q Consensus       480 ~~~~~~~~~~~-~~gw~~TGDlg~~d~dG~  508 (508)
                      |++++.+.+.. .|.||+|||+|.+|++|+
T Consensus       447 wg~~~kT~eti~~drW~~TGDi~~m~enG~  476 (596)
T KOG1177|consen  447 WGEEEKTKETIGNDRWYDTGDIAVMDENGT  476 (596)
T ss_pred             cCCcccchhhcccccceecCceEEEcCCCc
Confidence            99999998888 889999999999999995

>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=5.5e-58  Score=473.84  Aligned_cols=399  Identities=28%  Similarity=0.421  Sum_probs=327.4

Q ss_pred             CCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHH
Q 010536           40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM  119 (508)
Q Consensus        40 ~~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~  119 (508)
                      ....++.+++.+.++.+|+++|+++.   +...    .+||+||.++++++|.+|++.|+++||+|+|+++|++++++++
T Consensus         8 ~~~~~~~~~l~~~a~~~~~~~a~~~~---~~~~----~~Ty~el~~~~~~~A~~L~~~~v~~gdrVail~~N~~e~~~~~   80 (534)
T COG0318           8 TAELTLASLLERAARRNPDRPALIFL---GRGG----RLTYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAF   80 (534)
T ss_pred             cccccHHHHHHHHHHhCCCceEEEEc---CCCc----eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHH
Confidence            45689999999999999999999987   4321    4999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCceee
Q 010536          120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCF  199 (508)
Q Consensus       120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (508)
                      +||+++|++++||||.+..+++.++++.+++++++++......+....... .....+...........          .
T Consensus        81 ~a~~~~Gav~vpln~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----------~  149 (534)
T COG0318          81 LAALRAGAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFAALLEAVAEAL-PVVLVVLLVGDADDRLP----------I  149 (534)
T ss_pred             HHHHhcCEEEeecCcccCHHHHHHHHHhcCCeEEEEcccchhHHHHHhccC-CcceEEEeccccccccc----------c
Confidence            999999999999999999999999999999999999988444443333222 22222222222211000          2


Q ss_pred             eHHHHHhcC-CCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhcccc--CCCCcEEEEecChH
Q 010536          200 SWEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKV--CSEEDTYFSFLPLA  276 (508)
Q Consensus       200 ~~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~pl~  276 (508)
                      .++++.... .........+++++++++|||||||.||||++||+++..+.......+     .  +...|++++++|++
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgv~~th~~~~~~~~~~~~~~-----~~~~~~~d~~l~~lPl~  224 (534)
T COG0318         150 TLEALAAEGPGPDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAAL-----GGGLTPDDVVLSWLPLF  224 (534)
T ss_pred             cHHHHhhccCCcccccCCCCCCCEEEEEeCCCCCCCCCEeEEecHhHHHHHHHHHHHh-----cccCCCCceEEEecChH
Confidence            455553332 111122226789999999999999999999999999999998887777     5  78999999999999


Q ss_pred             HHHHHHHHH-HHHHcCcEEEEec---CCHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHH
Q 010536          277 HIYDQIIET-HCIHKGCSIGFWR---GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYK  352 (508)
Q Consensus       277 ~~~g~~~~~-~~l~~G~~~~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (508)
                      |.+|+...+ ..++.|+++++.+   +++..++..+.++++|+++++|+++..++....                     
T Consensus       225 H~~Gl~~~~~~~~~~G~~~v~~~~~~f~~~~~~~~i~~~~~t~~~~vPt~~~~ll~~~~---------------------  283 (534)
T COG0318         225 HIFGLIVGLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPE---------------------  283 (534)
T ss_pred             HHHHHHHHHHHHHHcCCEEEeCCCCCcCHHHHHHHHHHhcceEEecchHHHHHHHhCCc---------------------
Confidence            999999655 5699999999987   599999999999999999999999999875211                     


Q ss_pred             hhhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcC-CceeeecccccCCcceeeccCCC
Q 010536          353 LGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG-APLTQGYGLTESCSGCFTSLADV  431 (508)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~-~~v~~~YG~TE~~~~~~~~~~~~  431 (508)
                                      ....+++       .++|.+++||+++++++.+.+++.++ ..+.+.||+||++..++......
T Consensus       284 ----------------~~~~~~~-------~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~  340 (534)
T COG0318         284 ----------------KDDDDLS-------SSLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTINPPDD  340 (534)
T ss_pred             ----------------cCccccc-------cceEEEEecCCcCCHHHHHHHHHHhCCCceEEeecccccCceeecCCCch
Confidence                            1111111       03999999999999999999999997 47999999999998887777666


Q ss_pred             -CcccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccccC-CccccCcEEEEcCCCC
Q 010536          432 -FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVD-GWFHTGDIGEWQPMEL  508 (508)
Q Consensus       432 -~~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~~~-gw~~TGDlg~~d~dG~  508 (508)
                       ....+++|+|+|+++++|+| ++++....  |++|||+|+||+|+.||+++|+.+.+.|.+ |||+|||+|++|+||+
T Consensus       341 ~~~~~~~~G~~~pg~~v~Ivd-~~~~~~~p--g~vGei~irgp~v~~GY~~~pe~t~~~f~~~gW~~TGDlg~~d~~G~  416 (534)
T COG0318         341 LLAKPGSVGRPLPGVEVRIVD-PDGGEVLP--GEVGEIWVRGPNVMKGYWNRPEATAEAFDEDGWLRTGDLGYVDEDGY  416 (534)
T ss_pred             hhhcCCcccccCCCcEEEEEe-CCCCccCC--CCceEEEEECchhhhhhcCChHHHHHhhccCCeeeecceEEEcCCcc
Confidence             33558889999999999999 77663222  589999999999999999999999998875 9999999999999986

>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

Probab=100.00  E-value=1.2e-57  Score=453.06  Aligned_cols=389  Identities=21%  Similarity=0.255  Sum_probs=321.7

Q ss_pred             HHHHHHHHH-hCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHh-CCCCCCCEEEEEcCCcHhHHHHHHHHH
Q 010536           46 WQFFCDSAK-RIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRS-RGVNPGDRCGIYGSNCPEWIIAMEACN  123 (508)
Q Consensus        46 ~~~l~~~a~-~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~-~gv~~gd~Vai~~~n~~~~~~~~lA~~  123 (508)
                      .+.++++.. ..+++.|+++.   +..++. +.+||+||.+.++++|+.|++ .|+ +||+|++++|+.+|+++++|||+
T Consensus        12 ~n~~dr~~~~~~~~~~aii~~---~e~~~~-~~~Ty~~L~~~v~r~A~~L~~~~gv-kGDrV~iymp~~pe~~~a~LA~~   86 (528)
T COG0365          12 LNALDRHLEADRPDDTAIIFD---GEDGLF-RELTYGDLRREVARLANALKDLGGV-KGDRVAIYMPNSPEAVIALLATA   86 (528)
T ss_pred             hhhhhhhhhccCCCceEEEEE---cCCCCc-eEEEHHHHHHHHHHHHHHHHHhCCC-CCCEEEEEcCCCHHHHHHHHHHH
Confidence            335666665 35789999998   444344 899999999999999999987 578 99999999999999999999999


Q ss_pred             HcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccC--CCCccEEEEecCCCchhhhhhhhcCceeeeH
Q 010536          124 SQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRC--CLYLKTIVSFANVSSSQKKEAEELGVSCFSW  201 (508)
Q Consensus       124 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (508)
                      ++|++.+|+.+.++++.+...+++++++++|+++......+......  ...+..++++....              ..|
T Consensus        87 riGAI~~~vf~~f~~~al~~Ri~d~~~k~vit~d~~~~~gk~~~~~~~~~~~~~~~iv~~r~~--------------~~~  152 (528)
T COG0365          87 RIGAIPAVVSPGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADAVLSSVVVVPRLG--------------LWY  152 (528)
T ss_pred             HcCCEEeecccCCCHHHHHHHHHccCCCEEEEecccccccccccchhHHHHhhcceEEecccc--------------ccH
Confidence            99999999999999999999999999999999987665433211100  00000133332221              578


Q ss_pred             HHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHH
Q 010536          202 EEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ  281 (508)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~  281 (508)
                      +++........+..+.+.+++++++|||||||+||||+++|+.++..........    ..+.++|++++..++.|.+|.
T Consensus       153 ~~~~~~~~~~~~~~~~~~~dpl~ilYTSGTTG~PKgv~H~~gg~l~~~~~~~~~~----~~~~~~Dv~w~~ad~GW~~g~  228 (528)
T COG0365         153 DEAVEKASEKFEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFH----GDLLPGDRFWNSSDPGWIYGL  228 (528)
T ss_pred             HHHhhccCCCCCccccCCCCeEEEEeCCCCCCCCceEEEeCchHHHHHHHHHHHh----hCCCCCCEEEeCCCchhhhCc
Confidence            8888776556666668999999999999999999999999998777776654432    266799999999999999999


Q ss_pred             HH-HHHHHHcCcEEEEecC----CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhh
Q 010536          282 II-ETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNM  356 (508)
Q Consensus       282 ~~-~~~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (508)
                      .. .+.+|..|++++++++    +++.+++.++++++|.++++|+.++.|.+.                           
T Consensus       229 ~~~v~~pL~~Gat~~~~eg~p~~~~~~~~~~ie~~~vt~~~tsPT~~R~l~~~---------------------------  281 (528)
T COG0365         229 WYSVFSPLASGATTVLYDGRPFYSPERLWEALEKYKVTIFGTSPTFLRRLMKL---------------------------  281 (528)
T ss_pred             hHHHHHHHhcCCeEEEeCCCCCCCHHHHHHHHHHhCCceEeeCHHHHHHHHhc---------------------------
Confidence            95 8899999999999875    389999999999999999999999998752                           


Q ss_pred             hcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCcceeeccCCCCcccC
Q 010536          357 KKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIG  436 (508)
Q Consensus       357 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~  436 (508)
                               .. .++.|++        +||.+.++|||++++..+++.+.+|+++.+.||+||++++.....+ . .+.+
T Consensus       282 ---------g~-~~~~dls--------sLr~~~SaGEPLnpe~~~w~~~~~g~~i~d~~gqTEtg~~~~~~~~-~-~~~g  341 (528)
T COG0365         282 ---------GL-GEPYDLS--------SLRVLGSAGEPLNPEAFEWFYSALGVWILDIYGQTETGMGFIAGRP-P-VKNG  341 (528)
T ss_pred             ---------CC-cccccch--------hheeeeccCCCCCHHHHHHHHHHhCCCEeccccccccCccccCCCC-C-cCCC
Confidence                     11 4455665        8999999999999999999999999999999999999966665545 3 2336


Q ss_pred             ccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecC--cccccccCCcccccccccCCccccCcEEEEcCCCC
Q 010536          437 TVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGN--TLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQPMEL  508 (508)
Q Consensus       437 s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~--~v~~gY~~~~~~~~~~~~~gw~~TGDlg~~d~dG~  508 (508)
                      +.|+|+||+++.|+| ++|+.++.+  + |+|.|+.+  +++++||+|++...+.+-++||.|||.+++|+|||
T Consensus       342 ~~g~p~pG~~~~vvd-d~g~~~~~~--~-G~Lvi~~~~p~~~~~~w~d~er~~~~y~~~~y~tGD~~~~DedGy  411 (528)
T COG0365         342 SSGLPLPGYAVRRVD-DEGNPVPPG--V-GELVVRLPWPGMALTYWNDPERYKEAYFGRWYRTGDWAERDEDGY  411 (528)
T ss_pred             CCCCCCCCceeEEEC-CCCCcCCCC--c-eEEEEeCCCchhhhhhhCCHHHHHHHHhhceeecCceeEEccCCC
Confidence            669999999999999 777766655  6 99999986  99999999999998888666999999999999997

>PTZ00237 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=4.4e-55  Score=462.45  Aligned_cols=417  Identities=17%  Similarity=0.207  Sum_probs=313.4

Q ss_pred             CCCCHHHHHHHHHHh--CCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHH
Q 010536           41 GLESPWQFFCDSAKR--IPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIA  118 (508)
Q Consensus        41 ~~~ti~~~l~~~a~~--~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~  118 (508)
                      ..++..++++++++.  +|+++|+++.   ...++..+.+||+||.++++++|..|+++|+++||+|+++++|+++++++
T Consensus        57 ~~n~~~~~l~~~~~~~~~~~~~A~~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GDrV~i~~~n~~e~~~~  133 (647)
T PTZ00237         57 ELNTCYNVLDIHVKNPLKRDQDALIYE---CPYLKKTIKLTYYQLYEKVCEFSRVLLNLNISKNDNVLIYMANTLEPLIA  133 (647)
T ss_pred             eeeHHHHHHHHhhcccCCCCceEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHH
Confidence            445667788887764  7999999875   33233347899999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCC---------hhhHhhcCccCCCCccEEEEecCCCc---h
Q 010536          119 MEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENK---------IPSILSCLPRCCLYLKTIVSFANVSS---S  186 (508)
Q Consensus       119 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~---~  186 (508)
                      +|||+++|++++|+++.++.+++.+++++++++++|+++..         ...+.++..........++.+.....   .
T Consensus       134 ~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~  213 (647)
T PTZ00237        134 MLSCARIGATHCVLFDGYSVKSLIDRIETITPKLIITTNYGILNDEIITFTPNLKEAIELSTFKPSNVITLFRNDITSES  213 (647)
T ss_pred             HHHHHHhCcEEEeeCCCCCHHHHHHHHHhcCCCEEEEcccceeCCceechHHHHHHHHhcccCCCCEEEEEEcCCccccc
Confidence            99999999999999999999999999999999999997631         12222222111112234444321110   0


Q ss_pred             hhh--hhhhcCceeeeHHHHHhcC-----CCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHH-HHHhhhhhhhhh
Q 010536          187 QKK--EAEELGVSCFSWEEFLQLG-----TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIV-AEVLSVDQMFVV  258 (508)
Q Consensus       187 ~~~--~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~-~~~~~~~~~~~~  258 (508)
                      ...  ...........|++++...     ...........+++++|+|||||||.||||+++|.+.+ .........+  
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~--  291 (647)
T PTZ00237        214 DLKKIETIPTIPNTLSWYDEIKKIKENNQSPFYEYVPVESSHPLYILYTSGTTGNSKAVVRSNGPHLVGLKYYWRSII--  291 (647)
T ss_pred             ccccccccCCCcccccHHHHHhhhccccCCCCCCceeeCCCCcEEEEEcCCCCCCCCeEEEcCcHHHHHHHHHHHHhc--
Confidence            000  0000000123566665421     11122334577999999999999999999999999843 3332222222  


Q ss_pred             ccccCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEecCC-------HHhHHHHhhhhcCeEEEecchHHHHHHHHHH
Q 010536          259 TGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGD-------VRYLMEDIQELKPTMFSGVPRVYDRIYTGIS  331 (508)
Q Consensus       259 ~~~~~~~~~~~l~~~pl~~~~g~~~~~~~l~~G~~~~~~~~~-------~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~  331 (508)
                         ....++++++..|+.|..+...++.+++.|+++++++++       +..+++.++++++|+++++|++++.|++...
T Consensus       292 ---~~~~~d~~~~~~~~~w~~~~~~~~~~l~~G~t~v~~~~~~~~p~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~  368 (647)
T PTZ00237        292 ---EKDIPTVVFSHSSIGWVSFHGFLYGSLSLGNTFVMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTDP  368 (647)
T ss_pred             ---CCCCCcEEEEcCCCceEeeHHHHHHHHhCCcEEEEeCCCCCCCCCchHHHHHHHHHhCeEEEEeCHHHHHHHHhhCc
Confidence               556789999999999987666788899999999998642       6789999999999999999999999865210


Q ss_pred             HHhhcCChhHHHHHHHHHHHHhhhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCce
Q 010536          332 NKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPL  411 (508)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v  411 (508)
                      ..                                .......+++        +||.+++||+++++++.+++++.+|+.+
T Consensus       369 ~~--------------------------------~~~~~~~~l~--------~Lr~i~~~G~~l~~~~~~~~~~~~g~~i  408 (647)
T PTZ00237        369 EA--------------------------------TIIRSKYDLS--------NLKEIWCGGEVIEESIPEYIENKLKIKS  408 (647)
T ss_pred             cc--------------------------------cccccccCcc--------hheEEEecCccCCHHHHHHHHHhcCCCE
Confidence            00                                0001112233        8999999999999999999999999999


Q ss_pred             eeecccccCCcceeeccCCCCcccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecC---cccccccCCcccccc
Q 010536          412 TQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGN---TLFSGYYKRPDLTEE  488 (508)
Q Consensus       412 ~~~YG~TE~~~~~~~~~~~~~~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~---~v~~gY~~~~~~~~~  488 (508)
                      ++.||+||+++.++..........+++|+|+||++++|+| ++|..++.  |+.|||+++||   +++.|||++++.+.+
T Consensus       409 ~~~yG~TE~~~~~~~~~~~~~~~~~s~G~p~~g~~~~i~d-~~g~~~~~--ge~GEl~v~~p~~p~~~~gy~~~~~~~~~  485 (647)
T PTZ00237        409 SRGYGQTEIGITYLYCYGHINIPYNATGVPSIFIKPSILS-EDGKELNV--NEIGEVAFKLPMPPSFATTFYKNDEKFKQ  485 (647)
T ss_pred             EeeechHHhChhhhccCCCCCCCCCCCccCcCCceEEEEC-CCCCCCCC--CCceEEEEeccCCchhhCceeCCHHHHHH
Confidence            9999999998765543332222337999999999999999 78876654  48999999986   789999999998887


Q ss_pred             ccc--CCccccCcEEEEcCCCC
Q 010536          489 VIV--DGWFHTGDIGEWQPMEL  508 (508)
Q Consensus       489 ~~~--~gw~~TGDlg~~d~dG~  508 (508)
                      .|.  +|||+|||+|++|+||+
T Consensus       486 ~f~~~~g~~~TGDlg~~d~dG~  507 (647)
T PTZ00237        486 LFSKFPGYYNSGDLGFKDENGY  507 (647)
T ss_pred             HHhCCCCEEECCcEEEECCCCe
Confidence            773  79999999999999995

>PLN02654 acetate-CoA ligase

Probab=100.00  E-value=2e-54  Score=458.90  Aligned_cols=412  Identities=16%  Similarity=0.203  Sum_probs=315.0

Q ss_pred             CCHHHHHHHHHH-hCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHHH
Q 010536           43 ESPWQFFCDSAK-RIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (508)
Q Consensus        43 ~ti~~~l~~~a~-~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~lA  121 (508)
                      +...++|+++++ .+|+++|+++.   ...++..+.+||+||.++++++|++|+++|+++||+|+++++|++++++++||
T Consensus        88 N~~~~~l~~~~~~~~~~~~Al~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~pn~~e~v~a~lA  164 (666)
T PLN02654         88 NICYNCLDRNVEAGNGDKIAIYWE---GNEPGFDASLTYSELLDRVCQLANYLKDVGVKKGDAVVIYLPMLMELPIAMLA  164 (666)
T ss_pred             eHHHHHHHHhhccCCCCCEEEEEE---cCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence            344677877775 48999999875   33334457899999999999999999999999999999999999999999999


Q ss_pred             HHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhh---------HhhcCccC---CCCccEEEEecCCCchhhh
Q 010536          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPS---------ILSCLPRC---CLYLKTIVSFANVSSSQKK  189 (508)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~---------~~~~~~~~---~~~~~~~~~~~~~~~~~~~  189 (508)
                      |+++|++++|+++.++.+++..++++++++++|+++.....         +.......   ......++...........
T Consensus       165 ~~~~Gav~vpv~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (666)
T PLN02654        165 CARIGAVHSVVFAGFSAESLAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVGICLTYENQLAMKRE  244 (666)
T ss_pred             HHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHHHHhccccCCCccEEEEeccccccccc
Confidence            99999999999999999999999999999999998764321         11111100   0111222222211100000


Q ss_pred             hhhhcCceeeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHH-hhhhhhhhhccccCCCCcE
Q 010536          190 EAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEV-LSVDQMFVVTGKVCSEEDT  268 (508)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~-~~~~~~~~~~~~~~~~~~~  268 (508)
                      ...........|+++...............+++++|+|||||||.||||+++|++++... ......+     .+.++|+
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ilyTSGTTG~PKgVv~sh~~~~~~~~~~~~~~~-----~~~~~d~  319 (666)
T PLN02654        245 DTKWQEGRDVWWQDVVPNYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAF-----DYKPTDV  319 (666)
T ss_pred             ccccccCCcccHHHHhhcCCCCCCceecCCCCceEEEecCCCCCCCceEEecccHHHHHHHHHHHHhc-----CCCCCcE
Confidence            000000112235555443222222334577999999999999999999999999986443 3444444     7788999


Q ss_pred             EEEecChHHHHHHHH-HHHHHHcCcEEEEecC-----CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHH
Q 010536          269 YFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSK  342 (508)
Q Consensus       269 ~l~~~pl~~~~g~~~-~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~  342 (508)
                      +++.+|+.|.++... ++.+|+.|++++++++     ++..+++.|+++++|+++++|++++.|.+...           
T Consensus       320 ~~~~~~~~~~~g~~~~~~~~L~~G~tvvl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~-----------  388 (666)
T PLN02654        320 YWCTADCGWITGHSYVTYGPMLNGATVLVFEGAPNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDGD-----------  388 (666)
T ss_pred             EEEcCCchhhhhhHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhhCc-----------
Confidence            999999999998764 6789999999999863     78999999999999999999999999865210           


Q ss_pred             HHHHHHHHHHhhhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcC---Cceeeeccccc
Q 010536          343 KLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG---APLTQGYGLTE  419 (508)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~---~~v~~~YG~TE  419 (508)
                                              ......+++        +||.++++|+++++++.+++.+.+|   +.+.+.||+||
T Consensus       389 ------------------------~~~~~~~l~--------~Lr~i~~~Ge~l~~~~~~~~~~~~g~~~~~i~~~yg~TE  436 (666)
T PLN02654        389 ------------------------EYVTRHSRK--------SLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTE  436 (666)
T ss_pred             ------------------------cccccCChh--------heeEEEEecCCCCHHHHHHHHHHhCCCCCceeccccccc
Confidence                                    011122333        8999999999999999999999887   68999999999


Q ss_pred             CCcceeeccCCC-CcccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEec--CcccccccCCcccccccc---cCC
Q 010536          420 SCSGCFTSLADV-FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRG--NTLFSGYYKRPDLTEEVI---VDG  493 (508)
Q Consensus       420 ~~~~~~~~~~~~-~~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g--~~v~~gY~~~~~~~~~~~---~~g  493 (508)
                      +++..+...... ..+++++|+|+||++++|+| ++|..++.  ++.|||+|++  |+++.||+++++.+.+.+   .+|
T Consensus       437 ~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d-~~g~~~~~--~~~Gel~v~~~~p~~~~gy~~~~~~~~~~~~~~~~g  513 (666)
T PLN02654        437 TGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGKEIEG--ECSGYLCVKKSWPGAFRTLYGDHERYETTYFKPFAG  513 (666)
T ss_pred             cCCeeeccCCCCCCCCCCccCCCCCCceEEEEC-CCCCCCCC--CCceEEEEcCCCchhhhhhcCChHHHHHhhhhcCCC
Confidence            987766544322 33458999999999999999 88876653  3789999999  789999999998887665   379


Q ss_pred             ccccCcEEEEcCCCC
Q 010536          494 WFHTGDIGEWQPMEL  508 (508)
Q Consensus       494 w~~TGDlg~~d~dG~  508 (508)
                      ||+|||+|++|+||+
T Consensus       514 ~~~TGD~~~~d~dG~  528 (666)
T PLN02654        514 YYFSGDGCSRDKDGY  528 (666)
T ss_pred             EEEeCceEEECCCCc
Confidence            999999999999996

>PRK07529 AMP-binding domain protein; Validated

Probab=100.00  E-value=1.4e-53  Score=450.82  Aligned_cols=413  Identities=22%  Similarity=0.293  Sum_probs=320.4

Q ss_pred             CCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHH
Q 010536           41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME  120 (508)
Q Consensus        41 ~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~l  120 (508)
                      -..+++++|++.++++|+++|+++... .+.....+++||+||.++++++|++|+++|+++||+|+++++|++++++++|
T Consensus        23 ~~~t~~~~l~~~a~~~p~~~Al~~~~~-~~~~~~~~~~Ty~eL~~~v~~~A~~L~~~Gi~~gd~V~i~~~n~~e~~~~~l  101 (632)
T PRK07529         23 LPASTYELLSRAAARHPDAPALSFLLD-ADPLDRPETWTYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFALW  101 (632)
T ss_pred             CCCCHHHHHHHHHHHCCCCceEEeecc-cCCCCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence            346899999999999999999987511 1112234789999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCCh-----hhHhhcCccCCCCccEEEEecCCCchhh--hhh--
Q 010536          121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI-----PSILSCLPRCCLYLKTIVSFANVSSSQK--KEA--  191 (508)
Q Consensus       121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--  191 (508)
                      ||+++| +++||+|.++.+++.++++.++++++|++....     ..+..... ....++.++.++.......  ...  
T Consensus       102 A~~~~G-i~~pi~~~~~~~~i~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~  179 (632)
T PRK07529        102 GGEAAG-IANPINPLLEPEQIAELLRAAGAKVLVTLGPFPGTDIWQKVAEVLA-ALPELRTVVEVDLARYLPGPKRLAVP  179 (632)
T ss_pred             HHHHhC-EEEeCCCcCCHHHHHHHHHhcCCcEEEEeCCCCCchHHHHHHHHHh-cCCcceeEEEecCccccccccccccc
Confidence            999999 578999999999999999999999999986542     22222221 2244555655543211000  000  


Q ss_pred             ---hhcCceeeeHHHHHhcCCCC--CCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCC
Q 010536          192 ---EELGVSCFSWEEFLQLGTLD--CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEE  266 (508)
Q Consensus       192 ---~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~  266 (508)
                         .........+++.+......  ........+++++++|||||||.||+|.+||++++.++......+     ....+
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~-----~~~~~  254 (632)
T PRK07529        180 LIRRKAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLL-----GLGPG  254 (632)
T ss_pred             ccccccccccCCHHHHHhcCCCccccccCCCCcCceEEEEECCCccCcCCEEEEcHHHHHHHHHHHHHhc-----CCCCC
Confidence               00112344566665544211  122234678999999999999999999999999998887766655     66789


Q ss_pred             cEEEEecChHHHHHHHH-HHHHHHcCcEEEEecC----C---HHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCC
Q 010536          267 DTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG----D---VRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGG  338 (508)
Q Consensus       267 ~~~l~~~pl~~~~g~~~-~~~~l~~G~~~~~~~~----~---~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~  338 (508)
                      +++++.+|++|.++... .+.++..|+++++.+.    +   ...+++.++++++|++.++|+++..|++...       
T Consensus       255 d~~l~~~pl~h~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~-------  327 (632)
T PRK07529        255 DTVFCGLPLFHVNALLVTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQVPV-------  327 (632)
T ss_pred             CEEEEecCchhhhHHHHHHHHHHHCCCEEEecCccccCcchHHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcc-------
Confidence            99999999999999874 7789999999998752    2   3688999999999999999999998864110       


Q ss_pred             hhHHHHHHHHHHHHhhhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccc
Q 010536          339 ALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLT  418 (508)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~T  418 (508)
                                                     +..++        +++|.+++||+++++++.+++++.+|+++++.||+|
T Consensus       328 -------------------------------~~~~~--------~slr~v~~gg~~l~~~l~~~~~~~~g~~l~~~YG~T  368 (632)
T PRK07529        328 -------------------------------DGHDI--------SSLRYALCGAAPLPVEVFRRFEAATGVRIVEGYGLT  368 (632)
T ss_pred             -------------------------------cCCCc--------cceEEEEEcCCCCCHHHHHHHHHHhCCcEeeeeccc
Confidence                                           00112        389999999999999999999999999999999999


Q ss_pred             cCCcceeeccCCCCcccCccccccCCeEEEEeec-CCCC-ccCCCCCCCCeEEEecCcccccccCCcccccccc-cCCcc
Q 010536          419 ESCSGCFTSLADVFNMIGTVGVPMTTVEARLESV-PEMG-YDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWF  495 (508)
Q Consensus       419 E~~~~~~~~~~~~~~~~~s~G~p~~~~~~~i~d~-~~~~-~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~-~~gw~  495 (508)
                      |++.++.....+.....+++|+|+|+++++|+.. +++. ..++..|+.|||+|+|++++.||+++++ +.+.| .+|||
T Consensus       369 E~~~~~~~~~~~~~~~~~svG~~~p~~~v~i~~~d~~g~~~~~~~~g~~Gel~v~gp~v~~GY~~~~~-~~~~~~~~gw~  447 (632)
T PRK07529        369 EATCVSSVNPPDGERRIGSVGLRLPYQRVRVVILDDAGRYLRDCAVDEVGVLCIAGPNVFSGYLEAAH-NKGLWLEDGWL  447 (632)
T ss_pred             ccCcccccCCccccccCCCcccccCCceEEEEEcCCCCcccccCCCCCceEEEEECCCccccccCCcc-ccccccCCCce
Confidence            9988776665444445589999999999999642 3341 1334456999999999999999998765 44445 78999


Q ss_pred             ccCcEEEEcCCCC
Q 010536          496 HTGDIGEWQPMEL  508 (508)
Q Consensus       496 ~TGDlg~~d~dG~  508 (508)
                      +|||+|++|+||+
T Consensus       448 ~TGDlg~~d~dG~  460 (632)
T PRK07529        448 NTGDLGRIDADGY  460 (632)
T ss_pred             EcCcEEEEcCCce
Confidence            9999999999985

>PLN02860 o-succinylbenzoate-CoA ligase

Probab=100.00  E-value=9.4e-54  Score=447.51  Aligned_cols=399  Identities=21%  Similarity=0.193  Sum_probs=311.9

Q ss_pred             CCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHH
Q 010536           41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME  120 (508)
Q Consensus        41 ~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~l  120 (508)
                      ..-++.++|++.++++|+++|+++.   +      +.+||+||.++++++|.+|.+.|+++||+|+++++|+++++++++
T Consensus         5 ~~~~~~~~~~~~~~~~p~~~a~~~~---~------~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~v~~~n~~~~~~~~l   75 (563)
T PLN02860          5 SQAHICQCLTRLATLRGNAVVTISG---N------RRRTGHEFVDGVLSLAAGLLRLGLRNGDVVAIAALNSDLYLEWLL   75 (563)
T ss_pred             hhhHHHHHHHHHHHhcCCceEEecC---C------ceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHH
Confidence            3468999999999999999999754   3      479999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCceeee
Q 010536          121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFS  200 (508)
Q Consensus       121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (508)
                      ||+++|++++||++.++.+++.++++.++++++++++................++.++..+........    .......
T Consensus        76 a~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~  151 (563)
T PLN02860         76 AVACAGGIVAPLNYRWSFEEAKSAMLLVRPVMLVTDETCSSWYEELQNDRLPSLMWQVFLESPSSSVFI----FLNSFLT  151 (563)
T ss_pred             HHhhccEEEEeCCcccCHHHHHHHHHhcCceEEEEecccchHHHHHhhccCCceeEEEEecCccccccc----chhhccc
Confidence            999999999999999999999999999999999998765332222111122333334433321100000    0000111


Q ss_pred             HHHHHhcC-CCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHH
Q 010536          201 WEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIY  279 (508)
Q Consensus       201 ~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~  279 (508)
                      .+++.... ..........++++++++|||||||.||+|.++|.++..+.......+     .+..+|++++.+|++|.+
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~pl~h~~  226 (563)
T PLN02860        152 TEMLKQRALGTTELDYAWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIV-----GYGEDDVYLHTAPLCHIG  226 (563)
T ss_pred             cchhccCccccccccCCCCCCCeEEEEecCCCCCCCceEEeehHHHHHHHHHHHhhc-----CCCCCCEEEEecCchhhc
Confidence            22222111 001111233568999999999999999999999999988777655554     678899999999999999


Q ss_pred             HHHHHHHHHHcCcEEEEec-CCHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhc
Q 010536          280 DQIIETHCIHKGCSIGFWR-GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKK  358 (508)
Q Consensus       280 g~~~~~~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (508)
                      ++...+.++..|+++++.+ +++..+++.++++++|+++++|.++..|++......                        
T Consensus       227 g~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~------------------------  282 (563)
T PLN02860        227 GLSSALAMLMVGACHVLLPKFDAKAALQAIKQHNVTSMITVPAMMADLISLTRKSM------------------------  282 (563)
T ss_pred             cHHHHHHHHHcCceEEecCCCCHHHHHHHHHHhCCeeEEeChHHHHHHHHhhhhhh------------------------
Confidence            9888888999999998876 499999999999999999999999999875321100                        


Q ss_pred             CCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhc-CCceeeecccccCCcceeeccCCC------
Q 010536          359 GMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESCSGCFTSLADV------  431 (508)
Q Consensus       359 ~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~~------  431 (508)
                                 ...++        +++|.+++||+++++++.+.+++.+ +..+++.||+||+++.++......      
T Consensus       283 -----------~~~~~--------~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~  343 (563)
T PLN02860        283 -----------TWKVF--------PSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTEACSSLTFMTLHDPTLESP  343 (563)
T ss_pred             -----------ccccc--------cceeEEEeCCCcCCHHHHHHHHHhcCCCceecCCCccccCcccccccccccccccc
Confidence                       00011        3899999999999999999999988 789999999999986554322111      


Q ss_pred             ----------------CcccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccc-cCCc
Q 010536          432 ----------------FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGW  494 (508)
Q Consensus       432 ----------------~~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~-~~gw  494 (508)
                                      .....++|+|+|+++++|++ ++       +++.|||+|+|+.++.||+++++.+.+.| .+||
T Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~~-~~-------~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~~g~  415 (563)
T PLN02860        344 KQTLQTVNQTKSSSVHQPQGVCVGKPAPHVELKIGL-DE-------SSRVGRILTRGPHVMLGYWGQNSETASVLSNDGW  415 (563)
T ss_pred             hhhhhhhcccccccccccCCcccCCccCCcEEEEec-CC-------CCceeEEEEecCcccccccCCccccchhccCCCe
Confidence                            11123789999999999998 44       34799999999999999999999998888 6899


Q ss_pred             cccCcEEEEcCCCC
Q 010536          495 FHTGDIGEWQPMEL  508 (508)
Q Consensus       495 ~~TGDlg~~d~dG~  508 (508)
                      |+|||+|++|+||+
T Consensus       416 ~~TGDl~~~d~dG~  429 (563)
T PLN02860        416 LDTGDIGWIDKAGN  429 (563)
T ss_pred             EEccceEEEcCCCC
Confidence            99999999999985

>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=8.7e-54  Score=444.66  Aligned_cols=392  Identities=21%  Similarity=0.223  Sum_probs=308.1

Q ss_pred             CCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHH
Q 010536           41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME  120 (508)
Q Consensus        41 ~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~l  120 (508)
                      ...++.+.|.+.++++|+++|+.+.   ..     +.+||+||.++++++|+.|.+.   +||+|+++++|+++++++++
T Consensus        17 ~~~~~~~~~~~~~~~~p~~~a~~~~---~~-----~~~Ty~el~~~~~~lA~~L~~~---~gd~Val~~~n~~e~~~~~l   85 (539)
T PRK06334         17 SGKTVLESFLKLCSEMTTATVCWDE---QL-----GKLSYNQVRKAVIALATKVSKY---PDQHIGIMMPASAGAYIAYF   85 (539)
T ss_pred             cCCcHHHHHHHHHHhCCCceEEEeC---CC-----CcccHHHHHHHHHHHHHHHhhc---cCCeEEEEcCCchHHHHHHH
Confidence            3478999999999999999998764   32     3699999999999999999873   89999999999999999999


Q ss_pred             HHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCceeee
Q 010536          121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFS  200 (508)
Q Consensus       121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (508)
                      ||+++|++++||+|..+.+++.++++.++++++|++.+....+.+...........++.+++....            ..
T Consensus        86 A~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------------~~  153 (539)
T PRK06334         86 ATLLSGKIPVMINWSQGLREVTACANLVGVTHVLTSKQLMQHLAQTHGEDAEYPFSLIYMEEVRKE------------LS  153 (539)
T ss_pred             HHHhcCCeeEecCcccchHHHHHHHHHcCCCEEEehHHHHHHHhhhhhccccccccEEEEehhhhh------------cc
Confidence            999999999999999999999999999999999998766554433221100011123333221100            00


Q ss_pred             HHHHHh------cCC----CCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEE
Q 010536          201 WEEFLQ------LGT----LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYF  270 (508)
Q Consensus       201 ~~~~~~------~~~----~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l  270 (508)
                      +.+...      ...    .........++++++|+|||||||.||+|.++|+++..........+     ....+|+++
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l  228 (539)
T PRK06334        154 FWEKCRIGIYMSIPFEWLMRWFGVSDKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFF-----SPKEDDVMM  228 (539)
T ss_pred             HHHhhhhhhhhcCCchhhhhcccCCCCCcCCEEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhc-----CCCCCceEE
Confidence            001000      000    00112235678999999999999999999999999998877765555     677899999


Q ss_pred             EecChHHHHHHHH-HHHHHHcCcEEEEec--CCHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHH
Q 010536          271 SFLPLAHIYDQII-ETHCIHKGCSIGFWR--GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEF  347 (508)
Q Consensus       271 ~~~pl~~~~g~~~-~~~~l~~G~~~~~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~  347 (508)
                      +.+|++|.+++.. .+.++..|+++++..  +++..+++.|+++++|++.++|++++.|++.....              
T Consensus       229 ~~~p~~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~--------------  294 (539)
T PRK06334        229 SFLPPFHAYGFNSCTLFPLLSGVPVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKKQ--------------  294 (539)
T ss_pred             EecchHhhhhhHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHHhhhhc--------------
Confidence            9999999999874 678899999998875  48999999999999999999999999987532110              


Q ss_pred             HHHHHhhhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhc-CCceeeecccccCCcceee
Q 010536          348 AYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESCSGCFT  426 (508)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~  426 (508)
                                             ..++        ++||.+++||+++++++.+++.+.+ +..+++.||+||++.+++.
T Consensus       295 -----------------------~~~~--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~  343 (539)
T PRK06334        295 -----------------------ESCL--------PSLRFVVIGGDAFKDSLYQEALKTFPHIQLRQGYGTTECSPVITI  343 (539)
T ss_pred             -----------------------cccc--------ccccEEEECCccCCHHHHHHHHHHCCCCeEEecccccccCceEEe
Confidence                                   0111        3899999999999999999999988 6899999999999877766


Q ss_pred             ccCCCCcccCccccccCCeEEEEeecCC-CCccCCCCCCCCeEEEecCcccccccCCcccccccc--cCCccccCcEEEE
Q 010536          427 SLADVFNMIGTVGVPMTTVEARLESVPE-MGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI--VDGWFHTGDIGEW  503 (508)
Q Consensus       427 ~~~~~~~~~~s~G~p~~~~~~~i~d~~~-~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~--~~gw~~TGDlg~~  503 (508)
                      .........+++|+|++|++++|+| ++ +..+  ..|+.|||+|+|++++.||+++++.+....  .+|||+|||+|++
T Consensus       344 ~~~~~~~~~~~vG~p~~g~~v~i~d-~~~~~~~--~~g~~Gel~v~g~~~~~GY~~~~~~~~~~~~~~~~w~~TGD~g~~  420 (539)
T PRK06334        344 NTVNSPKHESCVGMPIRGMDVLIVS-EETKVPV--SSGETGLVLTRGTSLFSGYLGEDFGQGFVELGGETWYVTGDLGYV  420 (539)
T ss_pred             ccCCCCCCCCcCceecCCCEEEEEc-CCCCccC--CCCceEEEEEecCcccccccCCcccccceeeCCceeEECCCEEEE
Confidence            5444333347899999999999999 54 4444  455899999999999999999988654322  3679999999999


Q ss_pred             cCCCC
Q 010536          504 QPMEL  508 (508)
Q Consensus       504 d~dG~  508 (508)
                      |+||+
T Consensus       421 d~~G~  425 (539)
T PRK06334        421 DRHGE  425 (539)
T ss_pred             CCCCe
Confidence            99985

>PRK08180 feruloyl-CoA synthase; Reviewed

Probab=100.00  E-value=2.5e-53  Score=448.08  Aligned_cols=395  Identities=19%  Similarity=0.337  Sum_probs=307.2

Q ss_pred             CCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHH
Q 010536           41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME  120 (508)
Q Consensus        41 ~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~l  120 (508)
                      ...++.++|+++++++|+++|+++.   + ..+.++.+||+||.++++++|.+|.+.|+++||+|+++++|+++++++++
T Consensus        37 ~~~~l~~~l~~~a~~~p~~~a~~~~---~-~~~~~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~Vai~~~n~~e~~~~~l  112 (614)
T PRK08180         37 YPRRLTDRLVHWAQEAPDRVFLAER---G-ADGGWRRLTYAEALERVRAIAQALLDRGLSAERPLMILSGNSIEHALLAL  112 (614)
T ss_pred             cCccHHHHHHHHHHHCCCCceeeec---c-CCCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHH
Confidence            4578999999999999999999865   3 22345789999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCEEEeccCCCC-----HHHHHHHHHhcCceEEEEcCCC-hhhHhhcCccCCCCccEEEEecCCCchhhhhhhhc
Q 010536          121 ACNSQAITYVPLYDTLG-----ANAVEFIINHAEVSIAFVQENK-IPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEEL  194 (508)
Q Consensus       121 A~~~~G~~~v~l~~~~~-----~~~l~~~l~~~~~~~vi~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (508)
                      ||+++|++++|++|.++     .+++.++++.++++++|+++.. ..........  ... .++.......         
T Consensus       113 A~~~~Gav~vpl~~~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~--~~~-~~i~~~~~~~---------  180 (614)
T PRK08180        113 AAMYAGVPYAPVSPAYSLVSQDFGKLRHVLELLTPGLVFADDGAAFARALAAVVP--ADV-EVVAVRGAVP---------  180 (614)
T ss_pred             HHHHcCCeEeeeccccccccCCHHHHHHHHhcCCCcEEEEcCHHHHHHHHhhhcc--CCc-eEEEecCCCC---------
Confidence            99999999999999988     7999999999999999997542 1111111111  111 2222221100         


Q ss_pred             CceeeeHHHHHhcCCCC---CCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccC--CCCcEE
Q 010536          195 GVSCFSWEEFLQLGTLD---CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVC--SEEDTY  269 (508)
Q Consensus       195 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~--~~~~~~  269 (508)
                      ......++++.......   .......++++++|+|||||||.||||.+||+++..++......+     ..  ...+++
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~~~~~~  255 (614)
T PRK08180        181 GRAATPFAALLATPPTAAVDAAHAAVGPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTF-----PFLAEEPPVL  255 (614)
T ss_pred             CcccccHHHHhccccccchhhhccCCCcCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHhhc-----cccCCCCcEE
Confidence            00123455555432111   111234678999999999999999999999999998887766554     33  256899


Q ss_pred             EEecChHHHHHHH-HHHHHHHcCcEEEEecC--C---HHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHH
Q 010536          270 FSFLPLAHIYDQI-IETHCIHKGCSIGFWRG--D---VRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKK  343 (508)
Q Consensus       270 l~~~pl~~~~g~~-~~~~~l~~G~~~~~~~~--~---~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~  343 (508)
                      ++.+|++|.+++. ..+.+++.|+++++.+.  +   ...+++.++++++|+++++|.+++.|++.+...          
T Consensus       256 l~~lPl~h~~g~~~~~~~~l~~G~~v~~~~~~~~~~~~~~~l~~i~~~~~t~~~~vP~~~~~l~~~~~~~----------  325 (614)
T PRK08180        256 VDWLPWNHTFGGNHNLGIVLYNGGTLYIDDGKPTPGGFDETLRNLREISPTVYFNVPKGWEMLVPALERD----------  325 (614)
T ss_pred             EEecchHHHhhHHHHHHHHHhcCCEEEEeCCCccchhHHHHHHHHHHhCCcEEechHHHHHHHHHHHHhc----------
Confidence            9999999999986 46678999999998752  3   457888999999999999999999987643211          


Q ss_pred             HHHHHHHHHhhhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHh----cC--Cceeeeccc
Q 010536          344 LFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVT----SG--APLTQGYGL  417 (508)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~----~~--~~v~~~YG~  417 (508)
                                             +.....++        +++|.+++||+++++++.+++.+.    +|  +.+++.||+
T Consensus       326 -----------------------~~~~~~~~--------~~lr~v~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~  374 (614)
T PRK08180        326 -----------------------AALRRRFF--------SRLKLLFYAGAALSQDVWDRLDRVAEATCGERIRMMTGLGM  374 (614)
T ss_pred             -----------------------hhhhhhhc--------cceeEEEEccCCCCHHHHHHHHHHHHhhcCCCceeeeeecc
Confidence                                   00111112        389999999999999999999874    33  689999999


Q ss_pred             ccCCcceeeccCCCCcccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccc-cCCccc
Q 010536          418 TESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFH  496 (508)
Q Consensus       418 TE~~~~~~~~~~~~~~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~-~~gw~~  496 (508)
                      ||++.+++...... ..++++|+|+||++++|++ +         +..|||+|+|++++.||+++|+.+.+.| .+|||+
T Consensus       375 TE~~~~~~~~~~~~-~~~~svG~p~pg~~v~i~d-~---------~~~GEi~vrg~~v~~GY~~~p~~t~~~~~~dgw~~  443 (614)
T PRK08180        375 TETAPSATFTTGPL-SRAGNIGLPAPGCEVKLVP-V---------GGKLEVRVKGPNVTPGYWRAPELTAEAFDEEGYYR  443 (614)
T ss_pred             cccCCceEeccccc-CCCCcccCccCCcEEEEec-C---------CCCcEEEEecCccchhhcCChhHhHhhcccCCcee
Confidence            99987766544332 3458999999999999998 3         2469999999999999999999999988 589999


Q ss_pred             cCcEEEE----cCCCC
Q 010536          497 TGDIGEW----QPMEL  508 (508)
Q Consensus       497 TGDlg~~----d~dG~  508 (508)
                      |||+|++    |+||+
T Consensus       444 TGDlg~~~~~~d~~g~  459 (614)
T PRK08180        444 SGDAVRFVDPADPERG  459 (614)
T ss_pred             ccceEEecCCcCCCCc
Confidence            9999999    45664

>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase

Probab=100.00  E-value=9.8e-54  Score=452.92  Aligned_cols=409  Identities=19%  Similarity=0.263  Sum_probs=321.2

Q ss_pred             CCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHHH
Q 010536           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (508)
Q Consensus        42 ~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~lA  121 (508)
                      .+...++|+++++.+|+++|+++.   +...+..+.+||+||.+++.++|++|+++|+++||+|+++++|+++++++++|
T Consensus        56 ~n~~~~~l~~~~~~~p~~~Al~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA  132 (625)
T TIGR02188        56 LNVSYNCVDRHLEARPDKVAIIWE---GDEPGEVRKITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAMLA  132 (625)
T ss_pred             EEHHHHHHHHhhccCCCCeEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence            346677888888899999999986   43234557899999999999999999999999999999999999999999999


Q ss_pred             HHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCCh---------hhHhhcCccCCC-CccEEEEecCCCchhhhhh
Q 010536          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI---------PSILSCLPRCCL-YLKTIVSFANVSSSQKKEA  191 (508)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  191 (508)
                      |+++|++++|+++.++.+++.+++++++++++|+++...         ..+.+... ..+ .++.++.+....... .. 
T Consensus       133 ~~~~Gav~v~i~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~-  209 (625)
T TIGR02188       133 CARIGAIHSVVFGGFSAEALADRINDAGAKLVITADEGLRGGKVIPLKAIVDEALE-KCPVSVEHVLVVRRTGNPV-PW-  209 (625)
T ss_pred             HHHhCCEEeccCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHH-hCCCCccEEEEEcCCCCCc-Cc-
Confidence            999999999999999999999999999999999987532         11212111 112 345555554321100 00 


Q ss_pred             hhcCceeeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhh-hhhhhhccccCCCCcEEE
Q 010536          192 EELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSV-DQMFVVTGKVCSEEDTYF  270 (508)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~-~~~~~~~~~~~~~~~~~l  270 (508)
                        .......++++.........+.....+++++|+|||||||.||||+++|++++...... ...+     .+..+|+++
T Consensus       210 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~-----~~~~~d~~~  282 (625)
T TIGR02188       210 --VEGRDVWWHDLMAKASAYCEPEPMDSEDPLFILYTSGSTGKPKGVLHTTGGYLLYAAMTMKYVF-----DIKDGDIFW  282 (625)
T ss_pred             --cccccccHHHHHhhcCCCCCceecCCCCceEEEecCCCCCCCCeEEECccHhHHHHHHHHHhcc-----CCCCCcEEE
Confidence              00112346666554432333445677899999999999999999999999987654432 2222     677899999


Q ss_pred             EecChHHHHHHH-HHHHHHHcCcEEEEecC-----CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHH
Q 010536          271 SFLPLAHIYDQI-IETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKL  344 (508)
Q Consensus       271 ~~~pl~~~~g~~-~~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~  344 (508)
                      +..|++|..+.. .++.++..|+++++.++     ++..+++.++++++|+++++|++++.|.+...             
T Consensus       283 ~~~~~~~~~g~~~~~~~~l~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~-------------  349 (625)
T TIGR02188       283 CTADVGWITGHSYIVYGPLANGATTVMFEGTPTYPDPGRFWEIIEKHKVTIFYTAPTAIRALMRLGD-------------  349 (625)
T ss_pred             ECCCchhhhccHHHHHHHHHcCCeEEEECCCCCCCChhHHHHHHHHhCCeEEEeCHHHHHHHHhcCC-------------
Confidence            999999998876 47789999999998753     78999999999999999999999998865211             


Q ss_pred             HHHHHHHHhhhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcC---CceeeecccccCC
Q 010536          345 FEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG---APLTQGYGLTESC  421 (508)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~---~~v~~~YG~TE~~  421 (508)
                                            ...+..++        ++||.+++||+++++++.+++.+.++   +++++.||+||++
T Consensus       350 ----------------------~~~~~~~l--------~~lr~i~~~G~~l~~~~~~~~~~~~~~~~~~i~~~yG~TE~~  399 (625)
T TIGR02188       350 ----------------------EWVKKHDL--------SSLRLLGSVGEPINPEAWMWYYKVVGKERCPIVDTWWQTETG  399 (625)
T ss_pred             ----------------------cccccCCc--------cceeEEEEecCCCCHHHHHHHHHHcCCCCCceEecccccccC
Confidence                                  00111222        28999999999999999999999875   7899999999998


Q ss_pred             cceeeccCC-CCcccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEec--CcccccccCCcccccccc---cCCcc
Q 010536          422 SGCFTSLAD-VFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRG--NTLFSGYYKRPDLTEEVI---VDGWF  495 (508)
Q Consensus       422 ~~~~~~~~~-~~~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g--~~v~~gY~~~~~~~~~~~---~~gw~  495 (508)
                      +.++..... ...+++++|+|++|++++|+| ++|..++ +.|+.|||+|+|  |+++.||+++++.+.+.+   .+|||
T Consensus       400 ~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d-~~g~~~~-~~g~~GeL~v~~p~p~~~~gy~~~~~~~~~~~~~~~~g~~  477 (625)
T TIGR02188       400 GIMITPLPGATPTKPGSATLPFFGIEPAVVD-EEGNPVE-GPGEGGYLVIKQPWPGMLRTIYGDHERFVDTYFSPFPGYY  477 (625)
T ss_pred             CceeecCCCCCCcCCCcccCCcCCceEEEEC-CCCCCCC-CCCCeEEEEEccCCCcccccccCChHHHHHHHhccCCCEE
Confidence            876654433 233458999999999999999 8887665 245899999999  689999999998776665   47899


Q ss_pred             ccCcEEEEcCCCC
Q 010536          496 HTGDIGEWQPMEL  508 (508)
Q Consensus       496 ~TGDlg~~d~dG~  508 (508)
                      +|||+|++|+||+
T Consensus       478 ~TGDl~~~d~dG~  490 (625)
T TIGR02188       478 FTGDGARRDKDGY  490 (625)
T ss_pred             ECCceEEEcCCCc
Confidence            9999999999995

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.

>PRK07788 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2e-53  Score=444.36  Aligned_cols=393  Identities=19%  Similarity=0.201  Sum_probs=319.8

Q ss_pred             CCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHHHH
Q 010536           43 ESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC  122 (508)
Q Consensus        43 ~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~lA~  122 (508)
                      .++.++|++.++++|+++|+++.   +      +.+||+||.++++++|++|.+.|+++||+|+++++|+++++++++||
T Consensus        49 ~~~~~~~~~~a~~~pd~~Al~~~---~------~~~Ty~el~~~~~~la~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~  119 (549)
T PRK07788         49 GPFAGLVAHAARRAPDRAALIDE---R------GTLTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAA  119 (549)
T ss_pred             chHHHHHHHHHHHCCCceEEEEC---C------CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence            48999999999999999999865   3      47999999999999999999999999999999999999999999999


Q ss_pred             HHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCceeeeHH
Q 010536          123 NSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWE  202 (508)
Q Consensus       123 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (508)
                      +++|++++|+++.++.+++.++++.++++++|++.+....+.+.. .....+..++.......       .....+..++
T Consensus       120 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-------~~~~~~~~~~  191 (549)
T PRK07788        120 GKVGARIILLNTGFSGPQLAEVAAREGVKALVYDDEFTDLLSALP-PDLGRLRAWGGNPDDDE-------PSGSTDETLD  191 (549)
T ss_pred             HhcCCEEEEeCCCCCHHHHHHHHHhcCCcEEEECchhHHHHHhhc-cccccceEEEEecCccc-------cCCcCcccHH
Confidence            999999999999999999999999999999999987766554332 11222333222211110       0112345677


Q ss_pred             HHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHH
Q 010536          203 EFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQI  282 (508)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~  282 (508)
                      ++......  ...+...++.++++|||||||.||+|.++|.++...+......+     .+..++++++.+|++|.+|+.
T Consensus       192 ~~~~~~~~--~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~d~~~~~~p~~~~~g~~  264 (549)
T PRK07788        192 DLIAGSST--APLPKPPKPGGIVILTSGTTGTPKGAPRPEPSPLAPLAGLLSRV-----PFRAGETTLLPAPMFHATGWA  264 (549)
T ss_pred             HHhcCCCC--CCCCCCCCCCcEEEECCCCCCCCCEEeccCccHHHHHHHHHhhC-----CCCcCCeEEEccchHHHHHHH
Confidence            77654321  12233456789999999999999999999999998877766555     677889999999999999998


Q ss_pred             HHHHHHHcCcEEEEec-CCHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhcCCC
Q 010536          283 IETHCIHKGCSIGFWR-GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMP  361 (508)
Q Consensus       283 ~~~~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (508)
                      ..+.++..|+++++.. +++..+++.++++++|++.++|+++..+++......                           
T Consensus       265 ~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~---------------------------  317 (549)
T PRK07788        265 HLTLAMALGSTVVLRRRFDPEATLEDIAKHKATALVVVPVMLSRILDLGPEVL---------------------------  317 (549)
T ss_pred             HHHHHHHhCCEEEECCCCCHHHHHHHHHHhCCcEEEEHHHHHHHHHhCccccc---------------------------
Confidence            7788999999998876 499999999999999999999999999865321100                           


Q ss_pred             CCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCcceeeccCCCCcccCccccc
Q 010536          362 QNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVP  441 (508)
Q Consensus       362 ~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~s~G~p  441 (508)
                              ...++        +++|.+++||+++++++.+++.+.++..+++.||+||++..+.....+....++++|+|
T Consensus       318 --------~~~~~--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~vG~~  381 (549)
T PRK07788        318 --------AKYDT--------SSLKIIFVSGSALSPELATRALEAFGPVLYNLYGSTEVAFATIATPEDLAEAPGTVGRP  381 (549)
T ss_pred             --------CCCCC--------CceeEEEEeCCCCCHHHHHHHHHHhCccceeccCcchhchhhccChhhhhhcCCCcccC
Confidence                    00011        38999999999999999999999999999999999999866554433323344789999


Q ss_pred             cCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccccCCccccCcEEEEcCCCC
Q 010536          442 MTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQPMEL  508 (508)
Q Consensus       442 ~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDlg~~d~dG~  508 (508)
                      +++++++|+| +++..++.  |+.|||+|+|+.++.||+++++.   ...+|||+|||+|++|+||+
T Consensus       382 ~~~~~~~i~d-~~~~~~~~--g~~Gel~v~g~~~~~gY~~~~~~---~~~~g~~~TGDl~~~~~~g~  442 (549)
T PRK07788        382 PKGVTVKILD-ENGNEVPR--GVVGRIFVGNGFPFEGYTDGRDK---QIIDGLLSSGDVGYFDEDGL  442 (549)
T ss_pred             CCCcEEEEEC-CCcCCCCC--CCeEEEEEeCCCccccccCCCcc---cccCCceecCceEEEcCCCC
Confidence            9999999999 88876665  48999999999999999998765   24589999999999999985

>PRK12582 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=5.3e-53  Score=446.48  Aligned_cols=392  Identities=20%  Similarity=0.342  Sum_probs=303.4

Q ss_pred             CCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHH
Q 010536           40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM  119 (508)
Q Consensus        40 ~~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~  119 (508)
                      ....++.++|+++++++|+++|+++.   +...+.++.+||+||.++++++|++|.+.|+++||+|+++++|++++++++
T Consensus        46 ~~~~~l~~~l~~~a~~~pd~~a~~~~---~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~  122 (624)
T PRK12582         46 PYPRSIPHLLAKWAAEAPDRPWLAQR---EPGHGQWRKVTYGEAKRAVDALAQALLDLGLDPGRPVMILSGNSIEHALMT  122 (624)
T ss_pred             CcccCHHHHHHHHHHHCCCchheecc---cCCCCceEEeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHH
Confidence            55788999999999999999999875   432355689999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCEEEeccCCCCH-----HHHHHHHHhcCceEEEEcCCC-hhhHhhcCccCCCCccEEEEecCCCchhhhhhhh
Q 010536          120 EACNSQAITYVPLYDTLGA-----NAVEFIINHAEVSIAFVQENK-IPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEE  193 (508)
Q Consensus       120 lA~~~~G~~~v~l~~~~~~-----~~l~~~l~~~~~~~vi~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (508)
                      +||+++|++++|++|.++.     +++.++++.++++++|+++.. ..........  ...+ ++.+.....        
T Consensus       123 lA~~~~G~v~vpl~p~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~--~~~~-~i~~~~~~~--------  191 (624)
T PRK12582        123 LAAMQAGVPAAPVSPAYSLMSHDHAKLKHLFDLVKPRVVFAQSGAPFARALAALDL--LDVT-VVHVTGPGE--------  191 (624)
T ss_pred             HHHHHcCCeEeeccCccccccCCHHHHHHHHHhcCCcEEEecCHHHHHHHHHhhhh--cCce-EEEEcCCCc--------
Confidence            9999999999999999875     899999999999999998642 1221122211  1122 233322110        


Q ss_pred             cCceeeeHHHHHhcCCCC---CCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCC---CCc
Q 010536          194 LGVSCFSWEEFLQLGTLD---CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCS---EED  267 (508)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~---~~~  267 (508)
                       ......++++.......   .......++++++|+|||||||.||||.++|++++..+......+     ...   ..+
T Consensus       192 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~~~~~  265 (624)
T PRK12582        192 -GIASIAFADLAATPPTAAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQLR-----PREPDPPPP  265 (624)
T ss_pred             -ccccccHHHHhhcCCcchhhhhhccCCCCceEEEEEcCCCCCCCceEEeeHHHHHHHHHHHHHhc-----cccCCCCCc
Confidence             00123455554332111   111234568999999999999999999999999998877654433     222   357


Q ss_pred             EEEEecChHHHHHHHH-HHHHHHcCcEEEEecC--C---HHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhH
Q 010536          268 TYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG--D---VRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALS  341 (508)
Q Consensus       268 ~~l~~~pl~~~~g~~~-~~~~l~~G~~~~~~~~--~---~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~  341 (508)
                      ++++.+|++|.+|+.. ++.++..|+++++.+.  .   ...+++.++++++|+++++|.+++.|++.+..         
T Consensus       266 ~~l~~lPl~h~~g~~~~~~~~l~~G~tvvl~~~~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~---------  336 (624)
T PRK12582        266 VSLDWMPWNHTMGGNANFNGLLWGGGTLYIDDGKPLPGMFEETIRNLREISPTVYGNVPAGYAMLAEAMEK---------  336 (624)
T ss_pred             eEEEechHHHHHhHHHHHHHHHhCceEEEEcCCCcccchHHHHHHHHHhcCCeEEeccCHHHHHHHHHHhh---------
Confidence            9999999999999875 5678899999988753  2   34567788999999999999999988653321         


Q ss_pred             HHHHHHHHHHHhhhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhc------CCceeeec
Q 010536          342 KKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS------GAPLTQGY  415 (508)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~------~~~v~~~Y  415 (508)
                                              .+.....+++        +||.+++||+++++++.+++.+.+      ++.+++.|
T Consensus       337 ------------------------~~~~~~~~~~--------slr~i~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~Y  384 (624)
T PRK12582        337 ------------------------DDALRRSFFK--------NLRLMAYGGATLSDDLYERMQALAVRTTGHRIPFYTGY  384 (624)
T ss_pred             ------------------------CHHHHHHHhh--------heeEEEecCCCCCHHHHHHHHHHHHhhcCCCceEEecc
Confidence                                    1111222233        899999999999999999998863      36899999


Q ss_pred             ccccCCcceeeccCCCCcccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccc-cCCc
Q 010536          416 GLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGW  494 (508)
Q Consensus       416 G~TE~~~~~~~~~~~~~~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~-~~gw  494 (508)
                      |+||++.++....... ...+++|+|+||++++|++          .|+.|||+|+|++++.||+++++.+.+.| .+||
T Consensus       385 G~TE~~~~~~~~~~~~-~~~~svG~p~pg~~v~i~~----------~G~~GEl~vrg~~v~~GY~~~p~~t~~~f~~dgw  453 (624)
T PRK12582        385 GATETAPTTTGTHWDT-ERVGLIGLPLPGVELKLAP----------VGDKYEVRVKGPNVTPGYHKDPELTAAAFDEEGF  453 (624)
T ss_pred             ccccccceeecccCCC-CCCCCCCcCCCCcEEEEcc----------CCCceEEEEECCcccccccCCccchhhhcCccCC
Confidence            9999987655333222 3458999999999999975          34789999999999999999999999999 6899


Q ss_pred             cccCcEEEE
Q 010536          495 FHTGDIGEW  503 (508)
Q Consensus       495 ~~TGDlg~~  503 (508)
                      |+|||+|++
T Consensus       454 ~~TGDlg~~  462 (624)
T PRK12582        454 YRLGDAARF  462 (624)
T ss_pred             ccccceEEe
Confidence            999999998

>PRK00174 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=7.9e-53  Score=446.73  Aligned_cols=406  Identities=19%  Similarity=0.260  Sum_probs=318.0

Q ss_pred             CHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHHHHH
Q 010536           44 SPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACN  123 (508)
Q Consensus        44 ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~lA~~  123 (508)
                      ...++|+++++++|+++|+++.   +..++..+.+||+||.++++++|++|+++|+++||+|+++++|+++++++++||+
T Consensus        68 ~~~~~l~~~~~~~p~~~Al~~~---~~~~~~~~~lTy~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~  144 (637)
T PRK00174         68 VSYNCLDRHLKTRGDKVAIIWE---GDDPGDSRKITYRELHREVCRFANALKSLGVKKGDRVAIYMPMIPEAAVAMLACA  144 (637)
T ss_pred             HHHHHHHHhhccCCCCeEEEEE---CCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHH
Confidence            3467788888999999999976   4333345789999999999999999999999999999999999999999999999


Q ss_pred             HcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChh---------hHhhcCccCCCCccEEEEecCCCchhhhhhhhc
Q 010536          124 SQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP---------SILSCLPRCCLYLKTIVSFANVSSSQKKEAEEL  194 (508)
Q Consensus       124 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (508)
                      ++|++++|++|.++.+++.++++.++++++|+++....         .+.+... ....++.++.+....... .   ..
T Consensus       145 ~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~---~~  219 (637)
T PRK00174        145 RIGAVHSVVFGGFSAEALADRIIDAGAKLVITADEGVRGGKPIPLKANVDEALA-NCPSVEKVIVVRRTGGDV-D---WV  219 (637)
T ss_pred             HcCCEEEecCCCCCHHHHHHHHHhcCCcEEEEcCccccCCcccchHHHHHHHHH-hCCCccEEEEEcCCCCCc-C---cC
Confidence            99999999999999999999999999999999875421         1111111 123445555554321100 0   00


Q ss_pred             CceeeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhh-hhhhhhccccCCCCcEEEEec
Q 010536          195 GVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSV-DQMFVVTGKVCSEEDTYFSFL  273 (508)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~  273 (508)
                      ......++++...............+++++|+|||||||.||||+++|++++.+.... ...+     .+..+|++++.+
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~-----~~~~~d~~~~~~  294 (637)
T PRK00174        220 EGRDLWWHELVAGASDECEPEPMDAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAMTMKYVF-----DYKDGDVYWCTA  294 (637)
T ss_pred             CCCcccHHHHHhhcCCCCCccccCCCCcEEEEECCCCCCCCceEEeCcchhHHHHHHHHHhcc-----CCCCCcEEEEcC
Confidence            1122346666544322233344567899999999999999999999999987654432 2223     667889999999


Q ss_pred             ChHHHHHHH-HHHHHHHcCcEEEEecC-----CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHH
Q 010536          274 PLAHIYDQI-IETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEF  347 (508)
Q Consensus       274 pl~~~~g~~-~~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~  347 (508)
                      |++|..+.. .++.+|+.|+++++.++     ++..+++.++++++|++.++|++++.|++....               
T Consensus       295 ~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~---------------  359 (637)
T PRK00174        295 DVGWVTGHSYIVYGPLANGATTLMFEGVPNYPDPGRFWEVIDKHKVTIFYTAPTAIRALMKEGDE---------------  359 (637)
T ss_pred             CchHhhhhHHHHHHHHHcCCEEEEECCCCCCCChHHHHHHHHhcCCeEEeecHHHHHHHHhcCCc---------------
Confidence            999998876 47789999999998753     689999999999999999999999988652110               


Q ss_pred             HHHHHhhhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcC---CceeeecccccCCcce
Q 010536          348 AYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG---APLTQGYGLTESCSGC  424 (508)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~---~~v~~~YG~TE~~~~~  424 (508)
                                          .....++        ++||.+++||+++++++.+++.+.++   +++++.||+||+++.+
T Consensus       360 --------------------~~~~~~~--------~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~  411 (637)
T PRK00174        360 --------------------HPKKYDL--------SSLRLLGSVGEPINPEAWEWYYKVVGGERCPIVDTWWQTETGGIM  411 (637)
T ss_pred             --------------------ccccCCc--------cceeEEEEeCCCCCHHHHHHHHHHhCCCCCceEecccccccCCce
Confidence                                0011122        28999999999999999999998875   7899999999998876


Q ss_pred             eeccCCC-CcccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEec--CcccccccCCcccccccc---cCCccccC
Q 010536          425 FTSLADV-FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRG--NTLFSGYYKRPDLTEEVI---VDGWFHTG  498 (508)
Q Consensus       425 ~~~~~~~-~~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g--~~v~~gY~~~~~~~~~~~---~~gw~~TG  498 (508)
                      +....+. ...++++|+|++|++++|+| ++|..++.+  +.|||+|+|  |+++.||+++++.+.+.+   .+|||+||
T Consensus       412 ~~~~~~~~~~~~~~vG~p~~g~~~~i~d-~~g~~~~~g--~~Gel~v~g~~p~~~~gy~~~~~~~~~~~~~~~~g~~~TG  488 (637)
T PRK00174        412 ITPLPGATPLKPGSATRPLPGIQPAVVD-EEGNPLEGG--EGGNLVIKDPWPGMMRTIYGDHERFVKTYFSTFKGMYFTG  488 (637)
T ss_pred             EecCCCCCCcCCCcccCCCCCceEEEEC-CCCCCCCCC--CcEEEEEcCCCCcccccccCCHHHHHHhhhcCCCCEEECC
Confidence            5543322 23347999999999999999 888766654  899999999  689999999998776665   47899999


Q ss_pred             cEEEEcCCCC
Q 010536          499 DIGEWQPMEL  508 (508)
Q Consensus       499 Dlg~~d~dG~  508 (508)
                      |+|++|+||+
T Consensus       489 Dl~~~d~dG~  498 (637)
T PRK00174        489 DGARRDEDGY  498 (637)
T ss_pred             ceEEEcCCCc
Confidence            9999999995

>PRK04319 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=6.5e-53  Score=442.05  Aligned_cols=401  Identities=16%  Similarity=0.225  Sum_probs=325.9

Q ss_pred             CCCCHHHHHHHHHH-hCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHH
Q 010536           41 GLESPWQFFCDSAK-RIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM  119 (508)
Q Consensus        41 ~~~ti~~~l~~~a~-~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~  119 (508)
                      ..+.+.++++++++ .+|+++|+.+.   +..  ..+.+||+||.++++++|.+|.++|+++||+|+++++|++++++++
T Consensus        41 ~~~~~~~~~~~~~~~~~~~~~a~~~~---~~~--~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~  115 (570)
T PRK04319         41 KVNIAYEAIDRHADGGRKDKVALRYL---DAS--RKEKYTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFAL  115 (570)
T ss_pred             ceeHHHHHHHHhhccCCCCceEEEEE---CCC--CceeecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHH
Confidence            34566678888887 58999999876   432  3368999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCceee
Q 010536          120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCF  199 (508)
Q Consensus       120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (508)
                      +||+++|++++|+++.++.+++.++++.++++++|++.........   ...+..+.++.++....        ......
T Consensus       116 la~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--------~~~~~~  184 (570)
T PRK04319        116 LGALKNGAIVGPLFEAFMEEAVRDRLEDSEAKVLITTPALLERKPA---DDLPSLKHVLLVGEDVE--------EGPGTL  184 (570)
T ss_pred             HHHHHcCcEEcccccccCHHHHHHHHHccCCcEEEEChhhhhccch---hcCCCceEEEEECCCcC--------CCcCcc
Confidence            9999999999999999999999999999999999998765443321   12234445555543211        011234


Q ss_pred             eHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHH
Q 010536          200 SWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIY  279 (508)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~  279 (508)
                      +++++...............+++++++|||||||.||+|.++|++++..+......+     .+..+|++++.+|++|.+
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~-----~~~~~d~~~~~~~~~~~~  259 (570)
T PRK04319        185 DFNALMEQASDEFDIEWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYVL-----DLHEDDVYWCTADPGWVT  259 (570)
T ss_pred             CHHHHHhhcCCcCCccccCCCCCEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhc-----CCCCCceEEecCChHHhh
Confidence            566655443222233345678999999999999999999999999998877766655     677899999999999998


Q ss_pred             HHH-HHHHHHHcCcEEEEec--CCHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhh
Q 010536          280 DQI-IETHCIHKGCSIGFWR--GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNM  356 (508)
Q Consensus       280 g~~-~~~~~l~~G~~~~~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (508)
                      |.. .++.++..|+++++..  +++..+++.++++++|+++++|++++.+++...                         
T Consensus       260 g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-------------------------  314 (570)
T PRK04319        260 GTSYGIFAPWLNGATNVIDGGRFSPERWYRILEDYKVTVWYTAPTAIRMLMGAGD-------------------------  314 (570)
T ss_pred             CchHHHHHHHhcCceEEEECCCCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcCC-------------------------
Confidence            876 4778999999999875  489999999999999999999999998864210                         


Q ss_pred             hcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCcceeeccCCCCcccC
Q 010536          357 KKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIG  436 (508)
Q Consensus       357 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~  436 (508)
                                ......++        +++|.+++||+++++++.+++++.+|..+++.||+||+++.+..........++
T Consensus       315 ----------~~~~~~~~--------~~lr~~~~gG~~l~~~~~~~~~~~~g~~i~~~YG~tE~~~~~~~~~~~~~~~~~  376 (570)
T PRK04319        315 ----------DLVKKYDL--------SSLRHILSVGEPLNPEVVRWGMKVFGLPIHDNWWMTETGGIMIANYPAMDIKPG  376 (570)
T ss_pred             ----------cccccCCc--------ccceEEEEcccCCCHHHHHHHHHHhCCCeEeceeecccCCEEEecCCCCCCCCC
Confidence                      00111122        289999999999999999999999999999999999998776654443334458


Q ss_pred             ccccccCCeEEEEeecCCCCccCCCCCCCCeEEEec--CcccccccCCcccccccccCCccccCcEEEEcCCCC
Q 010536          437 TVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRG--NTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQPMEL  508 (508)
Q Consensus       437 s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g--~~v~~gY~~~~~~~~~~~~~gw~~TGDlg~~d~dG~  508 (508)
                      ++|+|+|+++++|+| +++..++  .|+.|||+++|  +.++.||+++++.+.+.|.+|||+|||+|++|+||+
T Consensus       377 ~~G~p~~g~~~~i~d-~~~~~~~--~g~~Gel~i~~~~~~~~~GY~~~~~~~~~~~~~gw~~TGDl~~~~~~g~  447 (570)
T PRK04319        377 SMGKPLPGIEAAIVD-DQGNELP--PNRMGNLAIKKGWPSMMRGIWNNPEKYESYFAGDWYVSGDSAYMDEDGY  447 (570)
T ss_pred             cCcCCCCCCEEEEEC-CCCCCCC--CCCceEEEEcCCCChHHhHhcCCHHHhhhhhcCCceEeCcEEEECCCee
Confidence            999999999999999 7777665  45899999997  899999999999999999999999999999999984

>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]

Probab=100.00  E-value=1.2e-53  Score=431.35  Aligned_cols=389  Identities=28%  Similarity=0.460  Sum_probs=300.7

Q ss_pred             HHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHHHHHHcCCE
Q 010536           49 FCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAIT  128 (508)
Q Consensus        49 l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~lA~~~~G~~  128 (508)
                      |+++|+++||++|+++.   +.     +.+||+||.++++++|.+|.+.|+++||+|+++++|+++++++++||+++|++
T Consensus         1 f~~~a~~~pd~~a~~~~---~~-----~~~Ty~~l~~~v~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~~A~~~~G~~   72 (417)
T PF00501_consen    1 FERQAQRYPDRIALIDD---EG-----RSLTYKQLYERVRKLAAALRKLGVKKGDRVAILLPNSIEFVVAFLACLRAGAI   72 (417)
T ss_dssp             HHHHHHHSTTSEEEEET---TT-----EEEEHHHHHHHHHHHHHHHHHTTSSTTSEEEEEESSSHHHHHHHHHHHHTT-E
T ss_pred             ChhHHhhCCCceEEEEC---CC-----EEEEHHHHHHHHHHHhhHHHHhCCCccccccccCCccceeeeeeccccccccc
Confidence            67899999999999871   12     78999999999999999999999999999999999999999999999999999


Q ss_pred             EEeccCCCCHHHHHHHHHhcCceEEEE----cCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCceeeeHHHH
Q 010536          129 YVPLYDTLGANAVEFIINHAEVSIAFV----QENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEF  204 (508)
Q Consensus       129 ~v~l~~~~~~~~l~~~l~~~~~~~vi~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (508)
                      ++|++|.++.+++.++++.++++++|+    +......+...... ......++.++..........        .....
T Consensus        73 ~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--------~~~~~  143 (417)
T PF00501_consen   73 PVPLDPSLSEDELRHILRQSGPKVIITSEAVDSEPLKKLKSIFKQ-EDPSSSIIILDRDDLPKKEAL--------KSASL  143 (417)
T ss_dssp             EEEEETTSSHHHHHHHHHHHTESEEEECHHHSCHHHHHHHHHHTT-STTTEEEEEESHSSCTTCHHH--------HHHHH
T ss_pred             ccccccccccccccccccccceeEEEEeccccccccccchhhhcc-ccccccccccccccccccccc--------ccccc
Confidence            999999999999999999999999997    22221222222211 123344555543321110000        00000


Q ss_pred             HhcCCCCCCCCC-CCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHH-H
Q 010536          205 LQLGTLDCELPP-KKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ-I  282 (508)
Q Consensus       205 ~~~~~~~~~~~~-~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~-~  282 (508)
                      ...  ..   .. ..++++++++|||||||.||+|.++|++++..+..+.  +... ....  |++++.+|++|.+|+ .
T Consensus       144 ~~~--~~---~~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~--~~~~-~~~~--d~~l~~~p~~~~~g~~~  213 (417)
T PF00501_consen  144 SDE--PQ---SPEDSPDDPAFILFTSGTTGKPKGVVLTHRNLLAQARALA--LPEY-FGLG--DRILSFLPLSHIFGLIS  213 (417)
T ss_dssp             CHC--SH---STTHTTTSEEEEEEESSSSSSEEEEEEEHHHHHHHHHHHH--HHHT-TTTT--TEEEESS-TTSHHHHHH
T ss_pred             ccc--cc---cCCCCccceeEeeccccccccccccccccccccccccccc--cccc-cccC--ceEEeeccccccccccc
Confidence            000  00   00 0568999999999999999999999999999988865  1110 1222  599999999999999 5


Q ss_pred             HHHHHHHcCcEEEEecC-C---HHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhc
Q 010536          283 IETHCIHKGCSIGFWRG-D---VRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKK  358 (508)
Q Consensus       283 ~~~~~l~~G~~~~~~~~-~---~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (508)
                      ..+.+++.|+++++++. .   ++.+++.++++++|+++++|.+++.+++..+.. ..                      
T Consensus       214 ~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~-~~----------------------  270 (417)
T PF00501_consen  214 ALLAALFSGATLVLPSPFDLFDPESLLELISRYKPTILFAVPSMLEALLQSPEEK-TK----------------------  270 (417)
T ss_dssp             HHHHHHHCTSEEEEESSHHHHHHHHHHHHHHHHTESEEEEEHHHHHHHHHHHHTT-HH----------------------
T ss_pred             cccccccccccccccccccccccccchhccccccccccccccccccccccccccc-cc----------------------
Confidence            78899999999999986 2   477899999999999999999999987621110 00                      


Q ss_pred             CCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCC-ceeeecccccCCcceeecc-CCCCcccC
Q 010536          359 GMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGA-PLTQGYGLTESCSGCFTSL-ADVFNMIG  436 (508)
Q Consensus       359 ~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~-~v~~~YG~TE~~~~~~~~~-~~~~~~~~  436 (508)
                                ....++        +++|.+++||+++++++.+++++.++. .+++.||+||++.+++... .......+
T Consensus       271 ----------~~~~~l--------~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~  332 (417)
T PF00501_consen  271 ----------ISKKDL--------SSLRTVISGGEPLPPDLLRRLRKAFGNAPIINLYGSTETGSIATIRPPEDDIEKPG  332 (417)
T ss_dssp             ----------GTTTTG--------TT-SEEEEESST-CHHHHHHHHHHHTTSEEEEEEEEGGGSSEEEEEETTTHHSSTT
T ss_pred             ----------cccccc--------ccccccccccccCChhhccccccccccccceecccccccceeeecccccccccccc
Confidence                      000112        269999999999999999999999987 9999999999999987664 23333458


Q ss_pred             ccccccCCeEEEEeecCC-CCccCCCCCCCCeEEEecCcccccccCCcccccccccC-CccccCcEEEEcCCCC
Q 010536          437 TVGVPMTTVEARLESVPE-MGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVD-GWFHTGDIGEWQPMEL  508 (508)
Q Consensus       437 s~G~p~~~~~~~i~d~~~-~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~~~-gw~~TGDlg~~d~dG~  508 (508)
                      ++|+|+|+++++|+| ++ +..++.  |+.|||+|+||.++.||+++++.+.+.|.+ |||+|||+|++|+||+
T Consensus       333 ~~G~~~~~~~~~ivd-~~~~~~~~~--g~~Gei~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~g~~d~~G~  403 (417)
T PF00501_consen  333 SVGKPLPGVEVKIVD-PNTGEPLPP--GEPGEIVIRGPNVFSGYYNDPELTAEAFIDDGWYRTGDLGRLDEDGY  403 (417)
T ss_dssp             SEBEESTTEEEEEEC-TTTSSBEST--TSEEEEEEESTTSBSEETTBHHHHHHHEETTSEEEEEEEEEEETTSE
T ss_pred             ccccccccccccccc-ccccccccc--cccccccccCCccceeeeccccccccccccccceecceEEEECCCCe
Confidence            899999999999999 55 666654  489999999999999999999999999954 8999999999999984

This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....

>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed

Probab=100.00  E-value=3e-52  Score=435.12  Aligned_cols=396  Identities=22%  Similarity=0.279  Sum_probs=320.4

Q ss_pred             CCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHHH
Q 010536           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (508)
Q Consensus        42 ~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~lA  121 (508)
                      +.++.++|++.++.+|+++|+++.   +...+.++.+||.||.++++++|.+|.+.|+++||+|+++++|+++++++++|
T Consensus        23 ~~~l~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~Val~~~n~~e~~~~~la   99 (547)
T PRK13295         23 DRTINDDLDACVASCPDKTAVTAV---RLGTGAPRRFTYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEFTVLYLA   99 (547)
T ss_pred             CCCHHHHHHHHHHHCCCceEEEec---CCCccccceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHH
Confidence            368999999999999999999876   43344557899999999999999999999999999999999999999999999


Q ss_pred             HHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCCh-----hhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCc
Q 010536          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI-----PSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGV  196 (508)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (508)
                      |+++|++++|++|.++.+++.++++.++++++|+++...     ..+.+ .......++.++.++...            
T Consensus       100 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------------  166 (547)
T PRK13295        100 CSRIGAVLNPLMPIFRERELSFMLKHAESKVLVVPKTFRGFDHAAMARR-LRPELPALRHVVVVGGDG------------  166 (547)
T ss_pred             HHhcCcEEeccccccCHHHHHHHHHhcCceEEEEeccccCcchHHHHHH-HhhhCCCcceEEEecCCC------------
Confidence            999999999999999999999999999999999987542     11111 111223444555543221            


Q ss_pred             eeeeHHHHHhcC--------CCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcE
Q 010536          197 SCFSWEEFLQLG--------TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDT  268 (508)
Q Consensus       197 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (508)
                       ..++.++....        ...........+++++++|||||||.||+|.++|.++...+......+     .+..+++
T Consensus       167 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~  240 (547)
T PRK13295        167 -ADSFEALLITPAWEQEPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERL-----GLGADDV  240 (547)
T ss_pred             -ccCHHHHhhCCccccccccccccccCCCCCcceeEEEeCCCCCCCCCEEEeccHHHHHHHHHHHHHh-----CCCCCCe
Confidence             11233332211        001112234568999999999999999999999999998888866655     6788999


Q ss_pred             EEEecChHHHHHHHH-HHHHHHcCcEEEEecC-CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHH
Q 010536          269 YFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFE  346 (508)
Q Consensus       269 ~l~~~pl~~~~g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~  346 (508)
                      +++.+|++|.+++.. ++.+++.|+++++.+. ++..+++.++++++|++.++|.++..+.......             
T Consensus       241 ~l~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~-------------  307 (547)
T PRK13295        241 ILMASPMAHQTGFMYGLMMPVMLGATAVLQDIWDPARAAELIRTEGVTFTMASTPFLTDLTRAVKES-------------  307 (547)
T ss_pred             EEEecCchhhhhHHHHHHHHHHcCCeEEeCCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhccccc-------------
Confidence            999999999998875 7789999999998875 8999999999999999999999999886522110             


Q ss_pred             HHHHHHhhhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCcceee
Q 010536          347 FAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFT  426 (508)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~  426 (508)
                                              ..++        +++|.+++||+++++++.+++.+.++.++++.||+||++.+++.
T Consensus       308 ------------------------~~~~--------~~l~~~~~~G~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~  355 (547)
T PRK13295        308 ------------------------GRPV--------SSLRTFLCAGAPIPGALVERARAALGAKIVSAWGMTENGAVTLT  355 (547)
T ss_pred             ------------------------CCCc--------ccceEEEEecCCCCHHHHHHHHHHhCCCeEEeccCCCCCCeeec
Confidence                                    0111        37999999999999999999999889999999999999876554


Q ss_pred             ccCCC-CcccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccccCCccccCcEEEEcC
Q 010536          427 SLADV-FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQP  505 (508)
Q Consensus       427 ~~~~~-~~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDlg~~d~  505 (508)
                      ..... .....++|+|+++++++|+| +++..++.|  +.|||+|+|+.++.||+++++.+.+. .+|||+|||+|++|+
T Consensus       356 ~~~~~~~~~~~~~G~~~~~~~v~i~d-~~~~~~~~g--~~Gel~v~g~~~~~gY~~~~~~t~~~-~~g~~~TGD~~~~~~  431 (547)
T PRK13295        356 KLDDPDERASTTDGCPLPGVEVRVVD-ADGAPLPAG--QIGRLQVRGCSNFGGYLKRPQLNGTD-ADGWFDTGDLARIDA  431 (547)
T ss_pred             cCCCcchhccCccccccCCcEEEEEC-CCCCCCCCC--CCCeEEEEcCcccccccCCccccccC-CCCCeecceEEEEcC
Confidence            43322 22336889999999999999 777766554  89999999999999999999888766 688999999999999


Q ss_pred             CCC
Q 010536          506 MEL  508 (508)
Q Consensus       506 dG~  508 (508)
                      +|+
T Consensus       432 ~g~  434 (547)
T PRK13295        432 DGY  434 (547)
T ss_pred             Cce
Confidence            984

>TIGR02316 propion_prpE propionate--CoA ligase

Probab=100.00  E-value=8.5e-53  Score=445.23  Aligned_cols=410  Identities=16%  Similarity=0.155  Sum_probs=314.3

Q ss_pred             CCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHHH
Q 010536           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (508)
Q Consensus        42 ~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~lA  121 (508)
                      .+...++|+++++.+|+++|+++.   +..++..+.+||+||.++++++|++|+++|+++||+|+++++|+++++++++|
T Consensus        51 ~n~~~~~l~~~~~~~p~~~Al~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~n~~e~v~~~lA  127 (628)
T TIGR02316        51 TNLCHNALDRHLDERGEQLALVTV---SSETGQERTLTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAMLA  127 (628)
T ss_pred             eeHHHHHHHHHhCcCCCCeEEEEE---cCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence            344567888888899999999885   43334457899999999999999999999999999999999999999999999


Q ss_pred             HHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCCh---------hhHhhcCccCCCCccEEEEecCCCchhhhhhh
Q 010536          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI---------PSILSCLPRCCLYLKTIVSFANVSSSQKKEAE  192 (508)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (508)
                      |+++|++++|+++.++.+++..++++++++++|+++...         ..+.+...........++.++......    .
T Consensus       128 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~----~  203 (628)
T TIGR02316       128 CARIGAIHSVVFGGFASHSLALRIDDATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQHPPPHVLLVDRGLAPM----R  203 (628)
T ss_pred             HHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECCccccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCc----C
Confidence            999999999999999999999999999999999986432         111111111112344555554321100    0


Q ss_pred             hcCceeeeHHHHHhcCC-CCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHH-hhhhhhhhhccccCCCCcEEE
Q 010536          193 ELGVSCFSWEEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEV-LSVDQMFVVTGKVCSEEDTYF  270 (508)
Q Consensus       193 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~-~~~~~~~~~~~~~~~~~~~~l  270 (508)
                      ........++++..... ...+......+++++|+|||||||.||||+++|.+++.+. ......+     .+..+|+++
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~~~  278 (628)
T TIGR02316       204 LIPGRDVDYAALRTQHEDAQVPVEWLESNEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAIF-----GIRAGQVMF  278 (628)
T ss_pred             cccCccccHHHHhhccccCCCCceecCCCCcEEEEECCCCCCCCceEEECCcHHHHHHHHHHHHhc-----CCCCCcEEE
Confidence            00111235666554321 1122223467899999999999999999999999976443 3333333     678899999


Q ss_pred             EecChHHHHHHH-HHHHHHHcCcEEEEecC-----CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHH
Q 010536          271 SFLPLAHIYDQI-IETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKL  344 (508)
Q Consensus       271 ~~~pl~~~~g~~-~~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~  344 (508)
                      +.+|++|..+.. .++.+|+.|++++++++     ++..+++.++++++|+++++|++++.|.+...             
T Consensus       279 ~~~~~~~~~g~~~~~~~~L~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~-------------  345 (628)
T TIGR02316       279 SASDVGWVVGHSYIVYAPLLAGAATVLYEGLPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDA-------------  345 (628)
T ss_pred             EcCCCCeeehhhHHHHHHHhccceEEEeCCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCC-------------
Confidence            999999998875 57789999999999863     68899999999999999999999988754210             


Q ss_pred             HHHHHHHHhhhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCcce
Q 010536          345 FEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGC  424 (508)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~  424 (508)
                                            ......++        ++||.+++||+++++++.+++++.++..+++.||+||++..+
T Consensus       346 ----------------------~~~~~~~l--------~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~~~yG~TE~~~~~  395 (628)
T TIGR02316       346 ----------------------AWLRKHDL--------SSLHWLFLAGEPLDEPTAHWITDGLGKPVIDNYWQTETGWPV  395 (628)
T ss_pred             ----------------------cccccCCc--------cceeEEEEecCCCCHHHHHHHHHHhCCCEEecccccccCcee
Confidence                                  00111222        389999999999999999999998999999999999998654


Q ss_pred             eeccCCC---CcccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecC---cccccccCCcccccccc----cCCc
Q 010536          425 FTSLADV---FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGN---TLFSGYYKRPDLTEEVI----VDGW  494 (508)
Q Consensus       425 ~~~~~~~---~~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~---~v~~gY~~~~~~~~~~~----~~gw  494 (508)
                      +......   ....+++|+|+||++++|+|.++|+.++.  |+.|||+|+||   +++.||+++++.+.+.+    .++|
T Consensus       396 ~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~~~~--g~~Gel~v~gp~~~g~~~~~~~~~~~~~~~~~~~~~~~~  473 (628)
T TIGR02316       396 LAIMPGLDLKPVKLGSPGLPMYGYHLRVLDEATGRPCGP--NEKGVLTVVPPLPPGCLSTVWGDDARFLKTYWSHFKRPL  473 (628)
T ss_pred             ecCCCCCCcCCCCCCCcccCcCCceEEEEECCCCCCCCC--CCcEEEEEecCCCccccccccCChHHHHHhhhhcCCCCE
Confidence            4332221   23348899999999999999325665554  48999999998   57799999987765543    5679


Q ss_pred             cccCcEEEEcCCCC
Q 010536          495 FHTGDIGEWQPMEL  508 (508)
Q Consensus       495 ~~TGDlg~~d~dG~  508 (508)
                      |+|||+|++|+||+
T Consensus       474 ~~TGD~g~~d~dG~  487 (628)
T TIGR02316       474 YSSFDWGIRDEDGY  487 (628)
T ss_pred             EECCceEEEcCCCc
Confidence            99999999999995

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.

>PLN02574 4-coumarate--CoA ligase-like

Probab=100.00  E-value=3.2e-52  Score=435.66  Aligned_cols=418  Identities=21%  Similarity=0.279  Sum_probs=314.9

Q ss_pred             CcccccccccCCCCCCCCCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHh-CCCCC
Q 010536           23 GPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRS-RGVNP  101 (508)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~-~gv~~  101 (508)
                      .++|++..+...++..+ ....+..++.+  +.+|+++|+++.   +..    ..+||+||.++++++|++|.+ .|+++
T Consensus        22 ~~~~~~~~~~~~~~~~~-~~~~~~~l~~~--~~~~~~~a~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~~G~~~   91 (560)
T PLN02574         22 TGIYSSKHPPVPLPSDP-NLDAVSFIFSH--HNHNGDTALIDS---STG----FSISYSELQPLVKSMAAGLYHVMGVRQ   91 (560)
T ss_pred             CeeecCCCCCCCCCCCC-CCCHHHHHhcC--cccCCCCEEEEC---CCC----CcccHHHHHHHHHHHHHHHHHHhCCCC
Confidence            45677665332333221 22233444444  679999999865   332    369999999999999999999 99999


Q ss_pred             CCEEEEEcCCcHhHHHHHHHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEec
Q 010536          102 GDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFA  181 (508)
Q Consensus       102 gd~Vai~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (508)
                      ||+|+++++|+++++++++||+++|++++|++|..+.+++.++++.++++++|++.+....+...      ... ++.+.
T Consensus        92 gd~V~i~~~n~~~~~~~~la~~~~G~v~v~l~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~------~~~-~~~~~  164 (560)
T PLN02574         92 GDVVLLLLPNSVYFPVIFLAVLSLGGIVTTMNPSSSLGEIKKRVVDCSVGLAFTSPENVEKLSPL------GVP-VIGVP  164 (560)
T ss_pred             CCEEEEECCCcchHHHHHHHHHHhCeEEeCcCcccCHHHHHHHHHhcCCEEEEECHHHHHHHHhc------CCc-EEecC
Confidence            99999999999999999999999999999999999999999999999999999987765544321      111 22221


Q ss_pred             CCCchhhhhhhhcCceeeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccc
Q 010536          182 NVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGK  261 (508)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~  261 (508)
                      ......     ........++++..............++++++++|||||||.||+|.++|+++...+..+.........
T Consensus       165 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~  239 (560)
T PLN02574        165 ENYDFD-----SKRIEFPKFYELIKEDFDFVPKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYE  239 (560)
T ss_pred             cccccc-----cCccCcccHHHHhhcCCcccccCCCCcCCEEEEEcCCCccCCCcEEEEeHHHHHHHHHHHHhccccccc
Confidence            110000     000112345555544322222333467899999999999999999999999999877765432111111


Q ss_pred             cCCCCcEEEEecChHHHHHHHH-HHHHHHcCcEEEEecC-CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCCh
Q 010536          262 VCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGA  339 (508)
Q Consensus       262 ~~~~~~~~l~~~pl~~~~g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~  339 (508)
                      ....+++++..+|++|.+|+.. .+.++..|+++++.+. ++..+++.++++++|++.++|+++..|++....       
T Consensus       240 ~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-------  312 (560)
T PLN02574        240 YPGSDNVYLAALPMFHIYGLSLFVVGLLSLGSTIVVMRRFDASDMVKVIDRFKVTHFPVVPPILMALTKKAKG-------  312 (560)
T ss_pred             cCCCCcEEEEecchHHHHHHHHHHHHHHhcCCEEEEecCCCHHHHHHHHHHcCCeEEecCCHHHHHHHhCccc-------
Confidence            2235688999999999999875 5567788999988874 999999999999999999999999998652110       


Q ss_pred             hHHHHHHHHHHHHhhhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhc-CCceeeecccc
Q 010536          340 LSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLT  418 (508)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~-~~~v~~~YG~T  418 (508)
                                                   ....++        +++|.+++||+++++++.+++.+.+ +..+++.||+|
T Consensus       313 -----------------------------~~~~~~--------~~lr~~~~gg~~l~~~~~~~~~~~~~~~~v~~~YG~t  355 (560)
T PLN02574        313 -----------------------------VCGEVL--------KSLKQVSCGAAPLSGKFIQDFVQTLPHVDFIQGYGMT  355 (560)
T ss_pred             -----------------------------cccCcc--------ccceEEEEecccCCHHHHHHHHHHCCCCcEEeccccc
Confidence                                         000112        3899999999999999999999887 68999999999


Q ss_pred             cCCcceeeccC-CCCcccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccc-cCCccc
Q 010536          419 ESCSGCFTSLA-DVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFH  496 (508)
Q Consensus       419 E~~~~~~~~~~-~~~~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~-~~gw~~  496 (508)
                      |++.+++.... ......+++|+|+|+++++|+|.+++..++  .|+.|||+|+|++++.||+++++.+.+.| .+|||+
T Consensus       356 E~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~g~~~~--~g~~Gei~v~g~~~~~GY~~~~~~t~~~~~~~g~~~  433 (560)
T PLN02574        356 ESTAVGTRGFNTEKLSKYSSVGLLAPNMQAKVVDWSTGCLLP--PGNCGELWIQGPGVMKGYLNNPKATQSTIDKDGWLR  433 (560)
T ss_pred             ccCceeecCCCccccCCCCceeeeCCCcEEEEEeCCCCcCCC--CCCCeEEEEECcchhhhhcCChhHhhhhccCCCCcc
Confidence            99866543222 222345899999999999999944555444  45899999999999999999999998887 689999


Q ss_pred             cCcEEEEcCCCC
Q 010536          497 TGDIGEWQPMEL  508 (508)
Q Consensus       497 TGDlg~~d~dG~  508 (508)
                      |||+|++|+||+
T Consensus       434 TGDlg~~~~~G~  445 (560)
T PLN02574        434 TGDIAYFDEDGY  445 (560)
T ss_pred             cceEEEEECCCe
Confidence            999999999985

>PRK05857 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.6e-52  Score=433.38  Aligned_cols=402  Identities=21%  Similarity=0.260  Sum_probs=307.7

Q ss_pred             CCCCCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHH
Q 010536           37 ESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWI  116 (508)
Q Consensus        37 ~~~~~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~  116 (508)
                      +++..+.++.+.|.+.|+++|+++|+++.   ++.    +.+||+||.++++++|+.|.+.|+++||+|+++++|+++++
T Consensus         8 ~~~~~~~~~~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~e~~   80 (540)
T PRK05857          8 AMPQLPSTVLDRVFEQARQQPEAIALRRC---DGT----SALRYRELVAEVGGLAADLRAQSVSRGSRVLVISDNGPETY   80 (540)
T ss_pred             ccccCCcchHHHHHHHHhhCCCcEEEeec---CCC----ceeeHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcCCCHHHH
Confidence            44556778999999999999999999865   442    57999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCc
Q 010536          117 IAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGV  196 (508)
Q Consensus       117 ~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (508)
                      ++++||+++|++++|+++.++.+++.++++.++++++|+++...... ..+......+. ++..+......         
T Consensus        81 ~~~lA~~~~G~v~v~l~~~~~~~~l~~~~~~~~~~~ii~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~---------  149 (540)
T PRK05857         81 LSVLACAKLGAIAVMADGNLPIAAIERFCQITDPAAALVAPGSKMAS-SAVPEALHSIP-VIAVDIAAVTR---------  149 (540)
T ss_pred             HHHHHHHHcCeEEEecCccCCHHHHHHHHHhcCCceEEEeccchhcc-ccccccccccc-eeEeecccccc---------
Confidence            99999999999999999999999999999999999999987653221 11111111121 12222111000         


Q ss_pred             eeeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChH
Q 010536          197 SCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLA  276 (508)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~  276 (508)
                       .  +.+.... ...........+++++++|||||||.||||.++|+++.++....... .........+++.++.+|++
T Consensus       150 -~--~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~  224 (540)
T PRK05857        150 -E--SEHSLDA-ASLAGNADQGSEDPLAMIFTSGTTGEPKAVLLANRTFFAVPDILQKE-GLNWVTWVVGETTYSPLPAT  224 (540)
T ss_pred             -c--ccccccc-cccccccCCCCCCeEEEEeCCCCCCCCCeEEEechhhhhhhHHhhhc-cccccccccCceeeecCCcc
Confidence             0  0000000 00111223466889999999999999999999999998765543221 00111445678999999999


Q ss_pred             HHHHHHHHHHHHHcCcEEEEecCCHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhh
Q 010536          277 HIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNM  356 (508)
Q Consensus       277 ~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (508)
                      |.+++...+.+++.|+++++.+.++..+++.++++++|+++++|.+++.+++.....                       
T Consensus       225 h~~~l~~~~~~l~~G~~~v~~~~~~~~~~~~i~~~~it~~~~~P~~~~~l~~~~~~~-----------------------  281 (540)
T PRK05857        225 HIGGLWWILTCLMHGGLCVTGGENTTSLLEILTTNAVATTCLVPTLLSKLVSELKSA-----------------------  281 (540)
T ss_pred             ccchHHHHHHHhhcceeEEecCCChhHHHHHHHhcCcceEEeChHHHHHHHhccccC-----------------------
Confidence            999988788899999998776668899999999999999999999999886532110                       


Q ss_pred             hcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCcceeeccCCC----C
Q 010536          357 KKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADV----F  432 (508)
Q Consensus       357 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~----~  432 (508)
                                    ..++        +++|.+++||++++....+++ +.+|+++++.||+||++........+.    .
T Consensus       282 --------------~~~~--------~~lr~~~~gG~~~~~~~~~~~-~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~  338 (540)
T PRK05857        282 --------------NATV--------PSLRLVGYGGSRAIAADVRFI-EATGVRTAQVYGLSETGCTALCLPTDDGSIVK  338 (540)
T ss_pred             --------------CCcC--------ccceEEEEcCccCCchhHHHH-HHhCCeeecccCCCcCCceeeecccccccccc
Confidence                          0111        389999999999988777644 567999999999999986544332221    1


Q ss_pred             cccCccccccCCeEEEEeecCCCCcc-CC---CCCCCCeEEEecCcccccccCCcccccccccCCccccCcEEEEcCCCC
Q 010536          433 NMIGTVGVPMTTVEARLESVPEMGYD-AL---SSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQPMEL  508 (508)
Q Consensus       433 ~~~~s~G~p~~~~~~~i~d~~~~~~~-~~---~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDlg~~d~dG~  508 (508)
                      ...+++|+|++|++++|+| +++... +.   ..++.|||+|+|+.++.||+++++.+.+.|.+|||+|||+|++|+||+
T Consensus       339 ~~~~~~G~~~~g~~v~i~d-~~~~~~~~~~~~~~~~~Gel~v~g~~~~~GY~~~~~~t~~~~~~g~~~TGDlg~~d~~g~  417 (540)
T PRK05857        339 IEAGAVGRPYPGVDVYLAA-TDGIGPTAPGAGPSASFGTLWIKSPANMLGYWNNPERTAEVLIDGWVNTGDLLERREDGF  417 (540)
T ss_pred             cccCCcCcccCCcEEEEEC-ccccCccccccCCCCCcceEEEeCcchhhhhhCCccchhhhcCCCceeccceEEEcCCce
Confidence            2347999999999999999 665522 11   235889999999999999999999999999999999999999999985

>PLN02246 4-coumarate--CoA ligase

Probab=100.00  E-value=2.8e-51  Score=427.01  Aligned_cols=415  Identities=23%  Similarity=0.310  Sum_probs=327.1

Q ss_pred             CCCcccccccccCCCCCCCCCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCC
Q 010536           21 SGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVN  100 (508)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~  100 (508)
                      +++-+||+-+....++    ...++.+++.++++++|+++|+++.   +..    +.+||.||.++++++|++|.+.|++
T Consensus         5 ~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~a~~~~---~~~----~~~ty~el~~~~~~la~~L~~~g~~   73 (537)
T PLN02246          5 SEEFIFRSKLPDIYIP----NHLPLHDYCFERLSEFSDRPCLIDG---ATG----RVYTYADVELLSRRVAAGLHKLGIR   73 (537)
T ss_pred             cceeEecCCCCCCCCC----CCCcHHHHHHHHHHhCCCCeEEEec---CCC----ceeeHHHHHHHHHHHHHHHHHhCCC
Confidence            3455677776554332    3468999999999999999999865   322    5799999999999999999999999


Q ss_pred             CCCEEEEEcCCcHhHHHHHHHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEe
Q 010536          101 PGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSF  180 (508)
Q Consensus       101 ~gd~Vai~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (508)
                      +||+|+++++|+++++++++||+++|++++|++|..+.+++..+++.++++++|++......+.+....  ..+ .++.+
T Consensus        74 ~gd~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~--~~~-~~i~~  150 (537)
T PLN02246         74 QGDVVMLLLPNCPEFVLAFLGASRRGAVTTTANPFYTPAEIAKQAKASGAKLIITQSCYVDKLKGLAED--DGV-TVVTI  150 (537)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHcCEEEecCCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHHhhc--CCc-eEEEe
Confidence            999999999999999999999999999999999999999999999999999999998776655443221  111 33333


Q ss_pred             cCCCchhhhhhhhcCceeeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhcc
Q 010536          181 ANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTG  260 (508)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~  260 (508)
                      +...           .....+.++..............++++++++|||||||.||+|.++|+++...+........ ..
T Consensus       151 ~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~-~~  218 (537)
T PLN02246        151 DDPP-----------EGCLHFSELTQADENELPEVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGEN-PN  218 (537)
T ss_pred             CCCC-----------CCceeHHHHhcCCCCCCCCCCCCccCEEEEEeCCCCCCCCceEEEeHHHHHHHHHHHhhccc-cc
Confidence            3221           11234455443332222333456789999999999999999999999999887765432110 01


Q ss_pred             ccCCCCcEEEEecChHHHHHHHH-HHHHHHcCcEEEEecC-CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCC
Q 010536          261 KVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGG  338 (508)
Q Consensus       261 ~~~~~~~~~l~~~pl~~~~g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~  338 (508)
                      ..+..+|++++.+|++|.+++.. ++.++..|+++++.+. ++..+++.++++++|++.++|.++..|++...       
T Consensus       219 ~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~-------  291 (537)
T PLN02246        219 LYFHSDDVILCVLPMFHIYSLNSVLLCGLRVGAAILIMPKFEIGALLELIQRHKVTIAPFVPPIVLAIAKSPV-------  291 (537)
T ss_pred             cCCCCCcEEEEeechHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHhCceEEEcchHHHHHHhcCcc-------
Confidence            25788999999999999999864 6678999999999875 89999999999999999999999988754210       


Q ss_pred             hhHHHHHHHHHHHHhhhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhc-CCceeeeccc
Q 010536          339 ALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGL  417 (508)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~-~~~v~~~YG~  417 (508)
                                                    ....++        +++|.+++||+++++++.+.+++.+ +..+++.||+
T Consensus       292 ------------------------------~~~~~~--------~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~YG~  333 (537)
T PLN02246        292 ------------------------------VEKYDL--------SSIRMVLSGAAPLGKELEDAFRAKLPNAVLGQGYGM  333 (537)
T ss_pred             ------------------------------ccccCc--------cceeEEEEecCcCCHHHHHHHHHHcCCCeEeccccc
Confidence                                          011112        2799999999999999999999988 6789999999


Q ss_pred             ccCCcceeeccC----CCCcccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccc-cC
Q 010536          418 TESCSGCFTSLA----DVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VD  492 (508)
Q Consensus       418 TE~~~~~~~~~~----~~~~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~-~~  492 (508)
                      ||++.+++....    .....++++|+|+++++++|+|.+++..++  .|+.|||+++|+.++.||+++++.+.+.| .+
T Consensus       334 tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~--~g~~Gel~v~g~~~~~GY~~~~~~~~~~~~~~  411 (537)
T PLN02246        334 TEAGPVLAMCLAFAKEPFPVKSGSCGTVVRNAELKIVDPETGASLP--RNQPGEICIRGPQIMKGYLNDPEATANTIDKD  411 (537)
T ss_pred             cccCcccccccccCCCCccccCCccccccCCcEEEEecCCCCCcCC--CCCceEEEEECCchhccccCCchhhhhcccCC
Confidence            999876543321    112234789999999999999933454444  45899999999999999999999998888 68


Q ss_pred             CccccCcEEEEcCCCC
Q 010536          493 GWFHTGDIGEWQPMEL  508 (508)
Q Consensus       493 gw~~TGDlg~~d~dG~  508 (508)
                      |||+|||+|++|+||+
T Consensus       412 ~~~~TGD~~~~~~~g~  427 (537)
T PLN02246        412 GWLHTGDIGYIDDDDE  427 (537)
T ss_pred             CCeeecceEEEeCCCe
Confidence            9999999999999984

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.6e-51  Score=427.19  Aligned_cols=400  Identities=24%  Similarity=0.374  Sum_probs=331.2

Q ss_pred             CCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHH
Q 010536           40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM  119 (508)
Q Consensus        40 ~~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~  119 (508)
                      +.+.++.+.|.+.++.+|+++|+++.   +      +.+||+||.+.+.++|..|.+.|+++||+|+++++|++++++++
T Consensus         2 ~~~~~i~~~l~~~~~~~~~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~   72 (513)
T PRK07656          2 NEWMTLPELLARAARRFGDKEAYVFG---D------QRLTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAA   72 (513)
T ss_pred             CccccHHHHHHHHHHHCCCCeEEEeC---C------CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHH
Confidence            35688999999999999999999875   3      47999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCceee
Q 010536          120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCF  199 (508)
Q Consensus       120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (508)
                      +||+++|++++|+++..+.+++..+++.++++++++++.......... ......+.++.........      ......
T Consensus        73 la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------~~~~~~  145 (513)
T PRK07656         73 LGALKAGAVVVPLNTRYTADEAAYILARGDAKALFVLGLFLGVDYSAT-TRLPALEHVVICETEEDDP------HTEKMK  145 (513)
T ss_pred             HHHHhcCeEEEecCcccCHHHHHHHHhhcCceEEEEchhhHHHHHHHH-hccCCccEEEEEcCccccc------Cccccc
Confidence            999999999999999999999999999999999999987665543332 2223444444443322110      001224


Q ss_pred             eHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHH
Q 010536          200 SWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIY  279 (508)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~  279 (508)
                      .|+++...............+++++++|||||||.||+|.++|.++...+......+     ....++++++.+|++|.+
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~  220 (513)
T PRK07656        146 TFTDFLAAGDPAERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYL-----GLTEGDRYLAANPFFHVF  220 (513)
T ss_pred             cHHHHHhcCCCCCCcCCCCCCceEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhh-----CCCCCCeEEEccchHHHH
Confidence            566666544322334456778999999999999999999999999998888776666     778999999999999999


Q ss_pred             HHHH-HHHHHHcCcEEEEecC-CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhh
Q 010536          280 DQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMK  357 (508)
Q Consensus       280 g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (508)
                      ++.. ++.+++.|+++++.+. ++..+++.++++++|++.++|.+++.+++....                         
T Consensus       221 ~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~-------------------------  275 (513)
T PRK07656        221 GYKAGVNAPLMRGATILPLPVFDPDEVFRLIETERITVLPGPPTMYNSLLQHPDR-------------------------  275 (513)
T ss_pred             HHHHHHHHHHHcCceEEecCcCCHHHHHHHHHHhCCeEEechHHHHHHHHcCCCc-------------------------
Confidence            9875 7789999999988764 899999999999999999999999998652110                         


Q ss_pred             cCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCC-ceeeecccccCCcceeeccCCCCcc--
Q 010536          358 KGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGA-PLTQGYGLTESCSGCFTSLADVFNM--  434 (508)
Q Consensus       358 ~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~-~v~~~YG~TE~~~~~~~~~~~~~~~--  434 (508)
                                  ...++        +++|.+++||+++++++.+++.+.++. .+++.||+||+++++..+.......  
T Consensus       276 ------------~~~~~--------~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~  335 (513)
T PRK07656        276 ------------SAEDL--------SSLRLAVTGAASMPVALLERFESELGVDIVLTGYGLSEASGVTTFNRLDDDRKTV  335 (513)
T ss_pred             ------------CCCCc--------cceeeEEecCCCCCHHHHHHHHHHcCCCceEeEEccccCCCceeecCcccccccc
Confidence                        00111        289999999999999999999999998 9999999999988877665544322  


Q ss_pred             cCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCccccccccc-CCccccCcEEEEcCCCC
Q 010536          435 IGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV-DGWFHTGDIGEWQPMEL  508 (508)
Q Consensus       435 ~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~~-~gw~~TGDlg~~d~dG~  508 (508)
                      .+++|+|+++++++|+| +++..++.  |+.|||+++|+.++.||++++..+...+. +|||+|||+|++++||+
T Consensus       336 ~~~vG~~~~~~~~~i~d-~~~~~~~~--g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~tGDl~~~~~~g~  407 (513)
T PRK07656        336 AGTIGTAIAGVENKIVN-ELGEEVPV--GEVGELLVRGPNVMKGYYDDPEATAAAIDADGWLHTGDLGRLDEEGY  407 (513)
T ss_pred             CCCccccCCCcEEEEEC-CCCCCCCC--CCceEEEEEcchhhhhhcCCHHHHhhhhccCCceeccceEEEcCCee
Confidence            57899999999999999 77776654  48999999999999999999988888775 89999999999999884

>PRK05677 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=4e-51  Score=427.85  Aligned_cols=405  Identities=21%  Similarity=0.342  Sum_probs=314.5

Q ss_pred             CCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHh-CCCCCCCEEEEEcCCcHhHHHHH
Q 010536           41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRS-RGVNPGDRCGIYGSNCPEWIIAM  119 (508)
Q Consensus        41 ~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~-~gv~~gd~Vai~~~n~~~~~~~~  119 (508)
                      ...|+.++|++.++.+|+++|+++.   +      +.+||+||.++++++|++|.+ .|+++||+|+++++|++++++++
T Consensus        22 ~~~~~~~~l~~~a~~~p~~~al~~~---~------~~~Ty~el~~~~~~la~~L~~~~gi~~gd~Vai~~~n~~~~~~~~   92 (562)
T PRK05677         22 EYPNIQAVLKQSCQRFADKPAFSNL---G------KTLTYGELYKLSGAFAAWLQQHTDLKPGDRIAVQLPNVLQYPVAV   92 (562)
T ss_pred             ccCcHHHHHHHHHHhCCCCeeEEEC---C------ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHH
Confidence            3468999999999999999999864   2      479999999999999999997 59999999999999999999999


Q ss_pred             HHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchh--hh-hhh----
Q 010536          120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQ--KK-EAE----  192 (508)
Q Consensus       120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~----  192 (508)
                      |||+++|++++|++|..+.+++.++++.++++++|++......+.+....  ...+.++..+..+...  .. ...    
T Consensus        93 la~~~~Ga~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (562)
T PRK05677         93 FGAMRAGLIVVNTNPLYTAREMEHQFNDSGAKALVCLANMAHLAEKVLPK--TGVKHVIVTEVADMLPPLKRLLINAVVK  170 (562)
T ss_pred             HHHHHcCeEEeecCCCCCHHHHHHHHhccCceEEEEecchhhhHHHhhhc--cCcceeEEecccccccchhhhhcccchh
Confidence            99999999999999999999999999999999999987665543332211  1233333322111000  00 000    


Q ss_pred             -------h-cCceeeeHHHHHhcC-CCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccC
Q 010536          193 -------E-LGVSCFSWEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVC  263 (508)
Q Consensus       193 -------~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~  263 (508)
                             . .......+.+.+... ..........++++++++|||||||.||+|.++|+++...+......+.   ...
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~---~~~  247 (562)
T PRK05677        171 HVKKMVPAYHLPQAVKFNDALAKGAGQPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMG---SNL  247 (562)
T ss_pred             hccccccccCCcccccHHHHHhcCCCCCCCCCCCCccCEEEEEeCCCCCCCCcEEEEehhHHHHHHHHHHHHhc---cCC
Confidence                   0 000122344444333 1122223446789999999999999999999999999887766544331   122


Q ss_pred             C-CCcEEEEecChHHHHHHHH-HHHHHHcCcEEEEec--CCHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCCh
Q 010536          264 S-EEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWR--GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGA  339 (508)
Q Consensus       264 ~-~~~~~l~~~pl~~~~g~~~-~~~~l~~G~~~~~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~  339 (508)
                      . ..+.+++.+|++|.+++.. .+..+..|...++.+  .++..+++.++++++|+++++|.++..++...         
T Consensus       248 ~~~~~~~~~~~pl~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~---------  318 (562)
T PRK05677        248 NEGCEILIAPLPLYHIYAFTFHCMAMMLIGNHNILISNPRDLPAMVKELGKWKFSGFVGLNTLFVALCNNE---------  318 (562)
T ss_pred             CCCccEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHcCceEEecHHHHHHHHHhCc---------
Confidence            2 3478899999999999874 566778888777665  38899999999999999999999998875410         


Q ss_pred             hHHHHHHHHHHHHhhhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeeccccc
Q 010536          340 LSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTE  419 (508)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE  419 (508)
                                                  .....++        +++|.+++||+++++++.+.|++.++.++++.||+||
T Consensus       319 ----------------------------~~~~~~~--------~~lr~v~~gG~~~~~~~~~~~~~~~~~~v~~~YG~tE  362 (562)
T PRK05677        319 ----------------------------AFRKLDF--------SALKLTLSGGMALQLATAERWKEVTGCAICEGYGMTE  362 (562)
T ss_pred             ----------------------------ccccCCh--------hhceEEEEcCccCCHHHHHHHHHHcCCCeeccCCccc
Confidence                                        0111112        2799999999999999999999988999999999999


Q ss_pred             CCcceeeccCCCCcccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccc-cCCccccC
Q 010536          420 SCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTG  498 (508)
Q Consensus       420 ~~~~~~~~~~~~~~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~-~~gw~~TG  498 (508)
                      ++.++....... ..++++|+|+++++++|+| +++..++.|  +.|||+|+|+.++.||+++++.+.+.| .+|||+||
T Consensus       363 ~~~~~~~~~~~~-~~~~~vG~~~~~~~v~i~d-~~~~~~~~g--~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~~~TG  438 (562)
T PRK05677        363 TSPVVSVNPSQA-IQVGTIGIPVPSTLCKVID-DDGNELPLG--EVGELCVKGPQVMKGYWQRPEATDEILDSDGWLKTG  438 (562)
T ss_pred             cCcceeecCccC-CCCCccCccCCCCEEEEEC-CCCCCCCCC--CCeEEEEecCccchhhcCCchhhhhccCCCCccccc
Confidence            987766554432 2347899999999999999 777766554  899999999999999999999999988 58999999


Q ss_pred             cEEEEcCCCC
Q 010536          499 DIGEWQPMEL  508 (508)
Q Consensus       499 Dlg~~d~dG~  508 (508)
                      |+|++|+||+
T Consensus       439 Dlg~~~~~G~  448 (562)
T PRK05677        439 DIALIQEDGY  448 (562)
T ss_pred             ceEEECCCCc
Confidence            9999999985

>PRK08314 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=3e-51  Score=428.08  Aligned_cols=403  Identities=23%  Similarity=0.345  Sum_probs=323.3

Q ss_pred             CCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhC-CCCCCCEEEEEcCCcHhHHHHH
Q 010536           41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSR-GVNPGDRCGIYGSNCPEWIIAM  119 (508)
Q Consensus        41 ~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~-gv~~gd~Vai~~~n~~~~~~~~  119 (508)
                      ...++.++|.+.++++|+++|+++.   +      +.+||+||.+++.++|.+|.+. |+++||+|+++++|++++++++
T Consensus         8 ~~~tl~~~l~~~a~~~~~~~a~~~~---~------~~~Ty~~l~~~v~~~a~~L~~~~g~~~g~~V~i~~~~~~~~~~~~   78 (546)
T PRK08314          8 PETSLFHNLEVSARRYPDKTAIVFY---G------RAISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAY   78 (546)
T ss_pred             CCCCHHHHHHHHHHHcCCCcceeec---C------ceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCChHHHHHH
Confidence            3568999999999999999999876   4      4799999999999999999999 9999999999999999999999


Q ss_pred             HHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhh-------h---
Q 010536          120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQK-------K---  189 (508)
Q Consensus       120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~---  189 (508)
                      +||+++|++++|++|..+.+++.++++.+++++++++......+.......  .++.++..........       .   
T Consensus        79 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (546)
T PRK08314         79 YAILRANAVVVPVNPMNREEELAHYVTDSGARVAIVGSELAPKVAPAVGNL--RLRHVIVAQYSDYLPAEPEIAVPAWLR  156 (546)
T ss_pred             HHHHHcCcEEeecCcCcCHHHHHHHHHhCCCeEEEEccchhhhHHHHhhcc--CcceEEEecchhhcccccccCcccccc
Confidence            999999999999999999999999999999999999987766554332211  2233333211100000       0   


Q ss_pred             ----hhhhcCceeeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCC
Q 010536          190 ----EAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSE  265 (508)
Q Consensus       190 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~  265 (508)
                          ........+..|++...... .........+++++|+|||||||.||+|.++|++++.++......+     ....
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~  230 (546)
T PRK08314        157 AEPPLQALAPGGVVAWKEALAAGL-APPPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWS-----NSTP  230 (546)
T ss_pred             cccccccccccccccHHHHhcccC-CCCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhh-----CCCC
Confidence                00000113345666654332 2223345678999999999999999999999999999888876665     6788


Q ss_pred             CcEEEEecChHHHHHHHH-HHHHHHcCcEEEEecC-CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHH
Q 010536          266 EDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKK  343 (508)
Q Consensus       266 ~~~~l~~~pl~~~~g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~  343 (508)
                      +|++++.+|++|.+|+.. ++.++..|+++++.+. ++..+++.++++++|++.++|.++..++..              
T Consensus       231 ~d~~l~~~p~~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~ll~~--------------  296 (546)
T PRK08314        231 ESVVLAVLPLFHVTGMVHSMNAPIYAGATVVLMPRWDREAAARLIERYRVTHWTNIPTMVVDFLAS--------------  296 (546)
T ss_pred             CceEEEEcCchHHHHHHHHHHHHHHcCCeEEecCCCCHHHHHHHHHHhcCceecccHHHHHHHHhC--------------
Confidence            999999999999999864 6789999999999875 899999999999999999999999887541              


Q ss_pred             HHHHHHHHHhhhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCcc
Q 010536          344 LFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSG  423 (508)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~  423 (508)
                                             +.....+++        ++|.+++||+++++++.+++.+.++.++++.||+||++..
T Consensus       297 -----------------------~~~~~~~~~--------~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~  345 (546)
T PRK08314        297 -----------------------PGLAERDLS--------SLRYIGGGGAAMPEAVAERLKELTGLDYVEGYGLTETMAQ  345 (546)
T ss_pred             -----------------------CCccccCch--------hhheeeeccccCCHHHHHHHHHHcCCcEEecccccccccc
Confidence                                   111112222        7899999999999999999999899999999999999877


Q ss_pred             eeeccCCCCcccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCccccccccc--C--CccccCc
Q 010536          424 CFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV--D--GWFHTGD  499 (508)
Q Consensus       424 ~~~~~~~~~~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~~--~--gw~~TGD  499 (508)
                      ......+.. ..+++|+|+++++++|+|.+++..++.  |+.|||+|+|++++.||+++++.+.+.|.  +  +||+|||
T Consensus       346 ~~~~~~~~~-~~~~~G~~~~g~~~~i~d~~~~~~~~~--g~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~TGD  422 (546)
T PRK08314        346 THSNPPDRP-KLQCLGIPTFGVDARVIDPETLEELPP--GEVGEIVVHGPQVFKGYWNRPEATAEAFIEIDGKRFFRTGD  422 (546)
T ss_pred             eecCCCcCC-CCCccCcccCCeEEEEEeCCCCcCCCC--CCceEEEEECCchhccccCChhHhhhhhhhcCCCceEecCC
Confidence            665444332 347899999999999999444555544  48999999999999999999998888772  3  5999999


Q ss_pred             EEEEcCCCC
Q 010536          500 IGEWQPMEL  508 (508)
Q Consensus       500 lg~~d~dG~  508 (508)
                      +|++|++|+
T Consensus       423 l~~~~~~g~  431 (546)
T PRK08314        423 LGRMDEEGY  431 (546)
T ss_pred             EEEEcCCCc
Confidence            999999984

>PRK13382 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=4.2e-51  Score=425.12  Aligned_cols=388  Identities=20%  Similarity=0.218  Sum_probs=312.0

Q ss_pred             CCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHHHH
Q 010536           43 ESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC  122 (508)
Q Consensus        43 ~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~lA~  122 (508)
                      .++.++|.+.++++|+++|+++.   +      +.+||.||.++++++|.+|.+.|+++||+|+++++|+++++++++||
T Consensus        43 ~~~~~~l~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~~~~~A~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~  113 (537)
T PRK13382         43 MGPTSGFAIAAQRCPDRPGLIDE---L------GTLTWRELDERSDALAAALQALPIGEPRVVGIMCRNHRGFVEALLAA  113 (537)
T ss_pred             CCHHHHHHHHHHhCCCCeEEEeC---C------CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCcHHHHHHHHHH
Confidence            57999999999999999999864   3      47999999999999999999999999999999999999999999999


Q ss_pred             HHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCceeeeHH
Q 010536          123 NSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWE  202 (508)
Q Consensus       123 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (508)
                      +++|++++|+++.++.+++.++++.++++++|++......+...... ......++...+...            ...++
T Consensus       114 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------------~~~~~  180 (537)
T PRK13382        114 NRIGADILLLNTSFAGPALAEVVTREGVDTVIYDEEFSATVDRALAD-CPQATRIVAWTDEDH------------DLTVE  180 (537)
T ss_pred             HHcCcEEEecCcccCHHHHHHHHHhcCCCEEEEchhhHHHHHHHHhh-ccccceEEEecCCcc------------cccHH
Confidence            99999999999999999999999999999999997766544332211 111222222221110            12344


Q ss_pred             HHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHH
Q 010536          203 EFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQI  282 (508)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~  282 (508)
                      ++.......  ......++.++++|||||||.||||.++|.+++.........+     ....+++++...|++|.+++.
T Consensus       181 ~~~~~~~~~--~~~~~~~~~~~il~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~~~~g~~  253 (537)
T PRK13382        181 VLIAAHAGQ--RPEPTGRKGRVILLTSGTTGTPKGARRSGPGGIGTLKAILDRT-----PWRAEEPTVIVAPMFHAWGFS  253 (537)
T ss_pred             HHhhccCcC--CCCCCCCCCeEEEECCCCCCCCCEEEeccchHHHHHHHHHHhh-----CCCCCCeEEEecChHhhhHHH
Confidence            443322111  1123467889999999999999999999999888777766555     567889999999999999998


Q ss_pred             HHHHHHHcCcEEEEec-CCHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhcCCC
Q 010536          283 IETHCIHKGCSIGFWR-GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMP  361 (508)
Q Consensus       283 ~~~~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (508)
                      ..+.++..|+++++.+ +++..+++.++++++|++.++|++++.+++....                             
T Consensus       254 ~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~-----------------------------  304 (537)
T PRK13382        254 QLVLAASLACTIVTRRRFDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAE-----------------------------  304 (537)
T ss_pred             HHHHHHhcCcEEEECCCcCHHHHHHHHHHhCCEEEEehHHHHHHHHcCCch-----------------------------
Confidence            7888899999988876 4899999999999999999999999998642110                             


Q ss_pred             CCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCcceeeccCCCCcccCccccc
Q 010536          362 QNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVP  441 (508)
Q Consensus       362 ~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~s~G~p  441 (508)
                            ..+..++        .++|.+++||+++++++.+.|.+.++..+++.||+||++.++..........++++|+|
T Consensus       305 ------~~~~~~~--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~vG~p  370 (537)
T PRK13382        305 ------VRNRYSG--------RSLRFAAASGSRMRPDVVIAFMDQFGDVIYNNYNATEAGMIATATPADLRAAPDTAGRP  370 (537)
T ss_pred             ------hcccCCc--------cceeEEEEcCCCCCHHHHHHHHHHcCCcEEecccccccCcceecChhHhccCCCCcccc
Confidence                  0111111        27999999999999999999999999999999999999877665443323345799999


Q ss_pred             cCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccccCCccccCcEEEEcCCCC
Q 010536          442 MTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQPMEL  508 (508)
Q Consensus       442 ~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDlg~~d~dG~  508 (508)
                      +++++++|+| +++..++.|  +.|||+++|++++.||+  ++.+. .+.+|||+|||++++|+||+
T Consensus       371 ~~~~~~~i~d-~~~~~~~~g--~~GEl~v~g~~~~~gY~--~~~~~-~~~~g~~~TGDl~~~~~~g~  431 (537)
T PRK13382        371 AEGTEIRILD-QDFREVPTG--EVGTIFVRNDTQFDGYT--SGSTK-DFHDGFMASGDVGYLDENGR  431 (537)
T ss_pred             CcCcEEEEEC-CCCCCCCCC--CeeEEEEEcCCcccCcc--ccchh-hccCCCEeeCceEEEeCCCc
Confidence            9999999999 787766554  89999999999999998  34443 45689999999999999985

>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase

Probab=100.00  E-value=1.4e-50  Score=421.82  Aligned_cols=408  Identities=21%  Similarity=0.252  Sum_probs=321.6

Q ss_pred             ccccccCCCCCCCCCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEE
Q 010536           27 RCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCG  106 (508)
Q Consensus        27 ~~~~~~~~~~~~~~~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Va  106 (508)
                      |..+...++..    ..++.+.+++.++.+|+++|+++.   +...+.++.+||+||.++++++|.+|.+.|+++||+|+
T Consensus        10 ~~~~~~~~~~~----~~~~~~~~~~~~~~~p~~~a~~~~---~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~g~~~g~~V~   82 (538)
T TIGR03208        10 RAASKAAGLWR----DRTINDHFDAAVANCPDKPALTAY---RDGHGAVRRFSYRELDCRVDRIAVGLARLGVGRGDVVS   82 (538)
T ss_pred             hhhhhhcCccc----cCcHHHHHHHHHHHCCCceEEEee---cccCCCcceecHHHHHHHHHHHHHHHHHcCCCCCCEEE
Confidence            44444444443    368999999999999999999864   22223346899999999999999999999999999999


Q ss_pred             EEcCCcHhHHHHHHHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChh----hHhhcCccCCCCccEEEEecC
Q 010536          107 IYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP----SILSCLPRCCLYLKTIVSFAN  182 (508)
Q Consensus       107 i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~~~~~~~~  182 (508)
                      ++++|+++++++++||+++|++++|++|..+.+++.++++.++++++++++....    ...............++..+.
T Consensus        83 i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (538)
T TIGR03208        83 FQLPNRWEFTALYLACARIGAVLNPLMPIFRERELSFMLNHADSKVFVVPSVFRGFDHAAMARELQSKLPALRQVVVIDG  162 (538)
T ss_pred             EECCCCHHHHHHHHHHHhcCEEEeccCcccCHHHHHHHHHhcCCeEEEEccccccccHHHHHHHHhccCCcceEEEEecC
Confidence            9999999999999999999999999999999999999999999999999876421    111111122233445555432


Q ss_pred             CCchhhhhhhhcCceeeeHHHHHhcCC-C--C-----CCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhh
Q 010536          183 VSSSQKKEAEELGVSCFSWEEFLQLGT-L--D-----CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQ  254 (508)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~-----~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~  254 (508)
                      ...             ..++.++.... .  .     ........+++++++|||||||.||+|.++|+++...+.....
T Consensus       163 ~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~  229 (538)
T TIGR03208       163 DGD-------------DSFDRVLMTPERDDTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAE  229 (538)
T ss_pred             CCC-------------cCHHHHhhccccccccccccccccCCCCCCCeEEEEECCCCCCCCcEEEeehHHHHHHHHHHHh
Confidence            211             12332222110 0  0     1112346789999999999999999999999999998887766


Q ss_pred             hhhhccccCCCCcEEEEecChHHHHHHHH-HHHHHHcCcEEEEecC-CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHH
Q 010536          255 MFVVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISN  332 (508)
Q Consensus       255 ~~~~~~~~~~~~~~~l~~~pl~~~~g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~  332 (508)
                      .+     .+..++++++.+|++|..++.. .+.+++.|+++++.+. ++..+++.++++++|++.++|.++..++.....
T Consensus       230 ~~-----~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~  304 (538)
T TIGR03208       230 RL-----ELGGGDVILMASPMAHQTGFMYGLMMPLILNATAVLQDIWNPARAAELIRETGVTFTMASTPFLTDLCRAVKE  304 (538)
T ss_pred             hc-----CCCCCCeEEEeCCchhHHHHHHHHHHHHHcCCEEEecCccCHHHHHHHHHHhCCeEEecCHHHHHHHHhchhc
Confidence            65     6778999999999999998764 7788999999988774 899999999999999999999999987653211


Q ss_pred             HhhcCChhHHHHHHHHHHHHhhhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCcee
Q 010536          333 KISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLT  412 (508)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~  412 (508)
                      ..                                     .++        +++|.+++||+++++++.+++.+.+|.+++
T Consensus       305 ~~-------------------------------------~~~--------~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~  339 (538)
T TIGR03208       305 SG-------------------------------------APV--------PSLFTFLCAGAPIPGILVERAWELLGALIV  339 (538)
T ss_pred             cC-------------------------------------CCC--------CcceEEEEcCCCCCHHHHHHHHHHcCCeEE
Confidence            00                                     011        379999999999999999999998899999


Q ss_pred             eecccccCCcceeeccCCC-CcccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCccccccccc
Q 010536          413 QGYGLTESCSGCFTSLADV-FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV  491 (508)
Q Consensus       413 ~~YG~TE~~~~~~~~~~~~-~~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~~  491 (508)
                      +.||+||++.+........ .....++|+|+++++++|++ +++..++.  |+.|||+|+|+.++.||+++++.+.. ..
T Consensus       340 ~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~~-~~~~~~~~--g~~Gel~v~g~~~~~gy~~~~~~~~~-~~  415 (538)
T TIGR03208       340 SAWGMTENGAVTVTEPDDALEKASTTDGRPLPGVEVKVID-ANGAKLSQ--GETGRLLVRGCSNFGGYLKRPHLNST-DA  415 (538)
T ss_pred             eeeccCcCCCccccCcccchhhccCcccccCCCCEEEEEC-CCCCCCcC--CCCcEEEEecCcccccccCCcccccc-cC
Confidence            9999999987765444322 12235789999999999999 77766554  48999999999999999999887643 36


Q ss_pred             CCccccCcEEEEcCCCC
Q 010536          492 DGWFHTGDIGEWQPMEL  508 (508)
Q Consensus       492 ~gw~~TGDlg~~d~dG~  508 (508)
                      +|||+|||+|++|+||+
T Consensus       416 ~~~~~TGD~~~~~~~g~  432 (538)
T TIGR03208       416 EGWFDTGDLAFQDAEGY  432 (538)
T ss_pred             CCceeccceEEECCCCc
Confidence            89999999999999985

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.

>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=5.3e-51  Score=419.90  Aligned_cols=372  Identities=24%  Similarity=0.367  Sum_probs=310.4

Q ss_pred             CCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHHH
Q 010536           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (508)
Q Consensus        42 ~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~lA  121 (508)
                      +.|+.++|.+++.++|+++|+.+.   +      +.+||.||.++++++|.+|.+.|+++||+|+++++|+++++++++|
T Consensus         1 ~~~~~~~l~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~~~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la   71 (483)
T PRK03640          1 METMPNWLKQRAFLTPDRTAIEFE---E------KKVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHA   71 (483)
T ss_pred             CCcHHHHHHHHHHhCCCceEEEeC---C------eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence            478999999999999999999865   3      5799999999999999999999999999999999999999999999


Q ss_pred             HHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCceeeeH
Q 010536          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW  201 (508)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (508)
                      |+++|++++|+++..+.+++..+++.++++.+++++..........                              ...+
T Consensus        72 ~~~~G~~~v~i~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~------------------------------~~~~  121 (483)
T PRK03640         72 LQQLGAVAVLLNTRLSREELLWQLDDAEVKCLITDDDFEAKLIPGI------------------------------SVKF  121 (483)
T ss_pred             HHhCCcEEEecCcCCCHHHHHHHHHhCCCCEEEEcchhhHHHhhhc------------------------------cccH
Confidence            9999999999999999999999999999999999876544321110                              0013


Q ss_pred             HHHHhcC-CCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHH
Q 010536          202 EEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD  280 (508)
Q Consensus       202 ~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g  280 (508)
                      +++.... ...........+++++++|||||||.||+|.++|.++...+......+     .+..+|++++.+|++|.++
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~g  196 (483)
T PRK03640        122 AELMNGPKEEAEIQEEFDLDEVATIMYTSGTTGKPKGVIQTYGNHWWSAVGSALNL-----GLTEDDCWLAAVPIFHISG  196 (483)
T ss_pred             HHHhhcccccCCCCCCCCCCCeEEEEeCCCcCCCCcEEEEecHHHHHHHHHHHHhc-----CCCcCcEEEEecCHHHHHH
Confidence            3332222 111122234568899999999999999999999999988776655554     7789999999999999999


Q ss_pred             HHHHHHHHHcCcEEEEecC-CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhcC
Q 010536          281 QIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKG  359 (508)
Q Consensus       281 ~~~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (508)
                      +...+.++..|+++++.+. ++..+++.++++++|++.++|+++..++..+...                          
T Consensus       197 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~--------------------------  250 (483)
T PRK03640        197 LSILMRSVIYGMRVVLVEKFDAEKINKLLQTGGVTIISVVSTMLQRLLERLGEG--------------------------  250 (483)
T ss_pred             HHHHHHHHhcCCEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCcc--------------------------
Confidence            9888889999999998875 9999999999999999999999999986421100                          


Q ss_pred             CCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCcceeeccC-CCCcccCcc
Q 010536          360 MPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLA-DVFNMIGTV  438 (508)
Q Consensus       360 ~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~-~~~~~~~s~  438 (508)
                                 .         ...++|.+++||+++++++.+.+++. ++++++.||+||++..+..... ......+++
T Consensus       251 -----------~---------~~~~lr~~~~~g~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~v  309 (483)
T PRK03640        251 -----------T---------YPSSFRCMLLGGGPAPKPLLEQCKEK-GIPVYQSYGMTETASQIVTLSPEDALTKLGSA  309 (483)
T ss_pred             -----------c---------cCCcceEEEEcCCCCCHHHHHHHHHh-CCCeeeeeccCcccccccccCcccccccCCCc
Confidence                       0         00389999999999999999998875 9999999999998765443332 233445899


Q ss_pred             ccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccccCCccccCcEEEEcCCCC
Q 010536          439 GVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQPMEL  508 (508)
Q Consensus       439 G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDlg~~d~dG~  508 (508)
                      |+|+++++++|.+ ++ ..+  ..|+.|||+++|++++.||+++++.+.+.|.+|||+|||+|++|+||+
T Consensus       310 G~p~~~~~~~i~~-~~-~~~--~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~tGDl~~~~~~g~  375 (483)
T PRK03640        310 GKPLFPCELKIEK-DG-VVV--PPFEEGEIVVKGPNVTKGYLNREDATRETFQDGWFKTGDIGYLDEEGF  375 (483)
T ss_pred             ccccCCcEEEEec-CC-CcC--CCCCceEEEEECcchhhhhcCCHHHHHHHHhcCCeeccceEEEcCCCC
Confidence            9999999999998 43 434  455899999999999999999999998889999999999999999985

>PRK10524 prpE propionyl-CoA synthetase; Provisional

Probab=100.00  E-value=3e-51  Score=434.21  Aligned_cols=408  Identities=17%  Similarity=0.186  Sum_probs=311.9

Q ss_pred             CCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHHHH
Q 010536           43 ESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC  122 (508)
Q Consensus        43 ~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~lA~  122 (508)
                      +...++|+++++.+|+++|+++.   +..++..+.+||+||.++++++|++|.++|+++||+|+++++|+++++++++||
T Consensus        53 n~~~~~l~~~~~~~p~~~A~~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~  129 (629)
T PRK10524         53 NLCHNAVDRHLAKRPEQLALIAV---STETDEERTYTFRQLHDEVNRMAAMLRSLGVQRGDRVLIYMPMIAEAAFAMLAC  129 (629)
T ss_pred             eHHHHHHHHhhccCCCCeEEEEE---cCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHH
Confidence            33577888888899999999876   433344578999999999999999999999999999999999999999999999


Q ss_pred             HHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCCh---------hhHhhcCccCCCCccEEEEecCCCchhhhhhhh
Q 010536          123 NSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI---------PSILSCLPRCCLYLKTIVSFANVSSSQKKEAEE  193 (508)
Q Consensus       123 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (508)
                      +++|++++|++|.++.+++..++++++++++|+++...         ..+.+...........++.++......    ..
T Consensus       130 ~~~Gav~v~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~----~~  205 (629)
T PRK10524        130 ARIGAIHSVVFGGFASHSLAARIDDAKPVLIVSADAGSRGGKVVPYKPLLDEAIALAQHKPRHVLLVDRGLAPM----AR  205 (629)
T ss_pred             HHhCcEEEeeCCCCCHHHHHHHHHhcCCcEEEEccCcccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCc----Cc
Confidence            99999999999999999999999999999999976421         222222211112334555554321100    00


Q ss_pred             cCceeeeHHHHHhcCC-CCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhh-hhhhhhhccccCCCCcEEEE
Q 010536          194 LGVSCFSWEEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLS-VDQMFVVTGKVCSEEDTYFS  271 (508)
Q Consensus       194 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~  271 (508)
                      .......++++..... ..........+++++|+|||||||.||||.++|.+++..... ....+     .+..+|++++
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~il~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~-----~~~~~d~~~~  280 (629)
T PRK10524        206 VAGRDVDYATLRAQHLGARVPVEWLESNEPSYILYTSGTTGKPKGVQRDTGGYAVALATSMDTIF-----GGKAGETFFC  280 (629)
T ss_pred             ccCCcccHHHHHhcCCCCCCCceeeCCCCceEEEeecCCCCCCceEEECCcHHHHHHHHHHHHhc-----CCCCCCEEEE
Confidence            0111234555544321 112222346789999999999999999999999997654443 22223     6778899999


Q ss_pred             ecChHHHHHHH-HHHHHHHcCcEEEEecC-----CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHH
Q 010536          272 FLPLAHIYDQI-IETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLF  345 (508)
Q Consensus       272 ~~pl~~~~g~~-~~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~  345 (508)
                      ..|+.|..+.. .++.+++.|+++++.++     ++..+++.++++++|+++++|++++.|.+...              
T Consensus       281 ~~~~~~~~~~~~~~~~~l~~G~~~v~~~g~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~--------------  346 (629)
T PRK10524        281 ASDIGWVVGHSYIVYAPLLAGMATIMYEGLPTRPDAGIWWRIVEKYKVNRMFSAPTAIRVLKKQDP--------------  346 (629)
T ss_pred             cCCCCeeccchHHHHHHHhCCCEEEEECCCCCCCChHHHHHHHHHcCceEEEeCHHHHHHHHhcCc--------------
Confidence            99999988865 47789999999998763     68899999999999999999999988754100              


Q ss_pred             HHHHHHHhhhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCccee
Q 010536          346 EFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCF  425 (508)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~  425 (508)
                                           ......+++        +||.+++||+++++++.+++.+.++.++++.||+||++..+.
T Consensus       347 ---------------------~~~~~~~l~--------~lr~i~~~Ge~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~  397 (629)
T PRK10524        347 ---------------------ALLRKHDLS--------SLRALFLAGEPLDEPTASWISEALGVPVIDNYWQTETGWPIL  397 (629)
T ss_pred             ---------------------ccccccChh--------heeEEEEeCCCCCHHHHHHHHHhcCCCeEeccccccccchhh
Confidence                                 001122233        899999999999999999999999999999999999985433


Q ss_pred             eccCC---CCcccCccccccCCeEEEEeecC-CCCccCCCCCCCCeEEEecC---cccccccCCcccccccc----cCCc
Q 010536          426 TSLAD---VFNMIGTVGVPMTTVEARLESVP-EMGYDALSSVPRGEICLRGN---TLFSGYYKRPDLTEEVI----VDGW  494 (508)
Q Consensus       426 ~~~~~---~~~~~~s~G~p~~~~~~~i~d~~-~~~~~~~~~~~~GEl~v~g~---~v~~gY~~~~~~~~~~~----~~gw  494 (508)
                      .....   .....+++|+|++|++++|+| + +|..++  .|+.|||+|+||   .++.||+++++.+.+.+    .++|
T Consensus       398 ~~~~~~~~~~~~~~~~G~p~~g~~~~i~d-~~~g~~~~--~g~~Gel~i~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~  474 (629)
T PRK10524        398 AIARGVEDRPTRLGSPGVPMYGYNVKLLN-EVTGEPCG--PNEKGVLVIEGPLPPGCMQTVWGDDDRFVKTYWSLFGRQV  474 (629)
T ss_pred             cCCCCcccCcCCCCCcccCcCCceEEEEe-CCCCCCCC--CCCcEEEEEcCCCChhhcCCccCChHHHHHhhhccCCCcE
Confidence            32221   123347999999999999999 6 776655  458999999998   57889999987665543    4689


Q ss_pred             cccCcEEEEcCCCC
Q 010536          495 FHTGDIGEWQPMEL  508 (508)
Q Consensus       495 ~~TGDlg~~d~dG~  508 (508)
                      |+|||+|++|+||+
T Consensus       475 ~~TGDl~~~d~dG~  488 (629)
T PRK10524        475 YSTFDWGIRDADGY  488 (629)
T ss_pred             EEcCCcEEEcCCCc
Confidence            99999999999985

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=6.4e-51  Score=423.48  Aligned_cols=402  Identities=25%  Similarity=0.387  Sum_probs=337.9

Q ss_pred             CCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHH
Q 010536           40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM  119 (508)
Q Consensus        40 ~~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~  119 (508)
                      ....++.++|.+.++.+|+++|+.+.   +      +.+||+||.++++++|++|.+.|+++|++|+++++|++++++++
T Consensus         3 ~~~~~l~~~l~~~~~~~p~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~g~~~~~~V~l~~~~~~~~~~~~   73 (521)
T PRK06187          3 DYPLTIGRILRHGARKHPDKEAVYFD---G------RRTTYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAY   73 (521)
T ss_pred             cccCCHHHHHHHHHHHCCCceEEEeC---C------ceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHH
Confidence            45679999999999999999999876   4      35999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCceee
Q 010536          120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCF  199 (508)
Q Consensus       120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (508)
                      +||+++|++++++++..+.+++..+++.+++++++++......+.+... ....++.++..++....      .......
T Consensus        74 la~~~~G~~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~~~~~~~  146 (521)
T PRK06187         74 FAVPKIGAVLHPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLLAAILP-QLPTVRTVIVEGDGPAA------PLAPEVG  146 (521)
T ss_pred             HHHHHcCeEEEecccCCCHHHHHHHHHhcCCeEEEEcchHHHHHHHHhh-ccCCccEEEEecCcccc------ccccccc
Confidence            9999999999999999999999999999999999999887766544332 22445566655443311      1112345


Q ss_pred             eHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHH
Q 010536          200 SWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIY  279 (508)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~  279 (508)
                      .+.++...............+++++++|||||||.||+|.++|.++..........+     .+..++++++.+|++|.+
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~-----~~~~~d~~~~~~~~~~~~  221 (521)
T PRK06187        147 EYEELLAAASDTFDFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWL-----KLSRDDVYLVIVPMFHVH  221 (521)
T ss_pred             cHHHHhhcCCccCCCCCCCccceEEEEECCCCCCCCceEEeehHHHHHHHHHHHHhh-----CCCCCCEEEEeCCchHHh
Confidence            566666554333334456678899999999999999999999999998888877655     788999999999999999


Q ss_pred             HHHHHHHHHHcCcEEEEecC-CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhc
Q 010536          280 DQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKK  358 (508)
Q Consensus       280 g~~~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (508)
                      ++...+.++..|+++++.+. ++..+++.++++++|.++++|++++.+++....                          
T Consensus       222 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~--------------------------  275 (521)
T PRK06187        222 AWGLPYLALMAGAKQVIPRRFDPENLLDLIETERVTFFFAVPTIWQMLLKAPRA--------------------------  275 (521)
T ss_pred             hHHHHHHHHHhCCEEEecCCCCHHHHHHHHHHhCCeEEEchHHHHHHHHcCcCC--------------------------
Confidence            99877779999999998875 899999999999999999999999998652211                          


Q ss_pred             CCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCcceeeccCCCC-----c
Q 010536          359 GMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVF-----N  433 (508)
Q Consensus       359 ~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~-----~  433 (508)
                                 ...++        +++|.+++||+++++++.+++.+.+++.+++.||+||+++++........     .
T Consensus       276 -----------~~~~~--------~~l~~v~~~Ge~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~  336 (521)
T PRK06187        276 -----------YFVDF--------SSLRLVIYGGAALPPALLREFKEKFGIDLVQGYGMTETSPVVSVLPPEDQLPGQWT  336 (521)
T ss_pred             -----------CccCc--------chhhEEEEcCcCCCHHHHHHHHHHhCcchheeeccCccCcccccCCcccccccccc
Confidence                       11112        27899999999999999999999889999999999999877665543332     2


Q ss_pred             ccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccccCCccccCcEEEEcCCCC
Q 010536          434 MIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQPMEL  508 (508)
Q Consensus       434 ~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDlg~~d~dG~  508 (508)
                      ..+++|+|++++.++|+| +++..++.+.|+.|||+++|+.++.||+++++.+.+.|.+|||+|||+|++|++|+
T Consensus       337 ~~~~~G~~~~~~~~~i~~-~~~~~~~~~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~~~~tGD~~~~~~~g~  410 (521)
T PRK06187        337 KRRSAGRPLPGVEARIVD-DDGDELPPDGGEVGEIIVRGPWLMQGYWNRPEATAETIDGGWLHTGDVGYIDEDGY  410 (521)
T ss_pred             cCCccccccCCeEEEEEC-CCCCCCCCCCCCeeEEEEECcchhhhhcCCHHHHHHHhhCCceeccceEEEcCCCC
Confidence            457999999999999999 88877776446999999999999999999999999999999999999999999984

>PLN02330 4-coumarate--CoA ligase-like 1

Probab=100.00  E-value=1.2e-50  Score=422.84  Aligned_cols=412  Identities=20%  Similarity=0.290  Sum_probs=322.0

Q ss_pred             CCCcccccccccCCCCCCCCCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCC
Q 010536           21 SGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVN  100 (508)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~  100 (508)
                      ++..+|++.+.....    +...|+.+++.+.++.+|+++|+.+.   .+.    +.+||+||.+++.++|..|.+.|++
T Consensus        10 ~~~~~~~~~~~~~~~----~~~~~~~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~~l~~~~~~la~~L~~~g~~   78 (546)
T PLN02330         10 DNEHIFRSRYPSVPV----PDKLTLPDFVLQDAELYADKVAFVEA---VTG----KAVTYGEVVRDTRRFAKALRSLGLR   78 (546)
T ss_pred             ccceeeccCCCCCCC----CCCCcHHHHHhhhhhcCCCccEEEec---CCC----CcccHHHHHHHHHHHHHHHHHhCCC
Confidence            566788888766533    34588999999999999999999864   222    4799999999999999999999999


Q ss_pred             CCCEEEEEcCCcHhHHHHHHHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEe
Q 010536          101 PGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSF  180 (508)
Q Consensus       101 ~gd~Vai~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (508)
                      +||+|+++++|+++++++++||+++|++++|+++..+.+++.++++.++++++++++.....+....      . .++.+
T Consensus        79 ~g~~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~------~-~~i~~  151 (546)
T PLN02330         79 KGQVVVVVLPNVAEYGIVALGIMAAGGVFSGANPTALESEIKKQAEAAGAKLIVTNDTNYGKVKGLG------L-PVIVL  151 (546)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHhCcEeccCCccCCHHHHHHHHHhcCCeEEEEccchhhhHhhcC------C-cEEEe
Confidence            9999999999999999999999999999999999999999999999999999999988766553321      1 12333


Q ss_pred             cCCCchhhhhhhhcCceeeeHHHHHhcCCC---CCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhh
Q 010536          181 ANVSSSQKKEAEELGVSCFSWEEFLQLGTL---DCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV  257 (508)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~  257 (508)
                      +....          .....|++++.....   .........+++++++|||||||.||+|.++|.++..++....... 
T Consensus       152 ~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~-  220 (546)
T PLN02330        152 GEEKI----------EGAVNWKELLEAADRAGDTSDNEEILQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSV-  220 (546)
T ss_pred             cCCCC----------CCcccHHHHHhhccccCcccccccCCcccEEEEEeCCCCcCCCcEEEEehHHHHHHHHHHhhcc-
Confidence            22110          112345555543311   1122334568899999999999999999999999987665421111 


Q ss_pred             hccccCCCCcEEEEecChHHHHHHH-HHHHHHHcCcEEEEecC-CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhh
Q 010536          258 VTGKVCSEEDTYFSFLPLAHIYDQI-IETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKIS  335 (508)
Q Consensus       258 ~~~~~~~~~~~~l~~~pl~~~~g~~-~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~  335 (508)
                        .......++.+..+|++|.+++. ..+.++..|+++++.+. ++..+++.++++++|++.++|+++..++...     
T Consensus       221 --~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~-----  293 (546)
T PLN02330        221 --GPEMIGQVVTLGLIPFFHIYGITGICCATLRNKGKVVVMSRFELRTFLNALITQEVSFAPIVPPIILNLVKNP-----  293 (546)
T ss_pred             --CccccCceEEEEecChHHHHHHHHHHHHHhhcCCEEEEecccCHHHHHHHHHHcCCeeeecCCHHHHHHHhCc-----
Confidence              11223456899999999999987 46778999999888764 9999999999999999999999999886411     


Q ss_pred             cCChhHHHHHHHHHHHHhhhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhc-CCceeee
Q 010536          336 SGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQG  414 (508)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~-~~~v~~~  414 (508)
                                                      ..+.+++..      .++|.+++||+++++++.+++.+.+ +.++++.
T Consensus       294 --------------------------------~~~~~~~~~------~~l~~i~~~g~~l~~~~~~~~~~~~~~~~~~~~  335 (546)
T PLN02330        294 --------------------------------IVEEFDLSK------LKLQAIMTAAAPLAPELLTAFEAKFPGVQVQEA  335 (546)
T ss_pred             --------------------------------cccccccch------heeeeEEEcCCcCCHHHHHHHHHHcCCCeEEec
Confidence                                            011111110      1579999999999999999999988 8999999


Q ss_pred             cccccCCcceeeccCCC----CcccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccc
Q 010536          415 YGLTESCSGCFTSLADV----FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI  490 (508)
Q Consensus       415 YG~TE~~~~~~~~~~~~----~~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~  490 (508)
                      ||+||++.+........    ....+++|+|+|+++++|+|.+++..++  .|+.|||+|+|+.++.||+++++.+.+.+
T Consensus       336 YG~tE~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~~~~~p--~g~~Gel~v~g~~~~~gy~~~~~~~~~~~  413 (546)
T PLN02330        336 YGLTEHSCITLTHGDPEKGHGIAKKNSVGFILPNLEVKFIDPDTGRSLP--KNTPGELCVRSQCVMQGYYNNKEETDRTI  413 (546)
T ss_pred             ccccccccceecCCCccccccccccCccccccCCcEEEEEeCCCCccCC--CCCceEEEEecchhhhhhccCccchhhhc
Confidence            99999876544321111    1233689999999999999944455454  45899999999999999999999988877


Q ss_pred             -cCCccccCcEEEEcCCCC
Q 010536          491 -VDGWFHTGDIGEWQPMEL  508 (508)
Q Consensus       491 -~~gw~~TGDlg~~d~dG~  508 (508)
                       .+|||+|||+|++|+||+
T Consensus       414 ~~~g~~~TGD~~~~~~dG~  432 (546)
T PLN02330        414 DEDGWLHTGDIGYIDDDGD  432 (546)
T ss_pred             cCCCceecccEEEEeCCCc
Confidence             689999999999999985

>PRK09274 peptide synthase; Provisional

Probab=100.00  E-value=4.6e-51  Score=426.93  Aligned_cols=392  Identities=19%  Similarity=0.230  Sum_probs=302.5

Q ss_pred             CCHHHHHHHHHHhCCCCCceeeeeccCCCC----CCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHH
Q 010536           43 ESPWQFFCDSAKRIPNNQMLGGRKVSDGKV----GPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIA  118 (508)
Q Consensus        43 ~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~----~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~  118 (508)
                      .|+.++|.+.++++|+++|+++.   +..+    ..++.+||+||.++++++|++|.+.|+++||+|+++++|+++++++
T Consensus         6 ~~~~~~l~~~a~~~p~~~a~~~~---~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~g~~~gd~V~~~~~n~~~~~~~   82 (552)
T PRK09274          6 ANIARHLPRAAQERPDQLAVAVP---GGRGADGKLAYDELSFAELDARSDAIAHGLNAAGIGRGMRAVLMVTPSLEFFAL   82 (552)
T ss_pred             hhHHHHHHHHHHhCCCcceEEec---cCCCCccccccCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCcHHHHHH
Confidence            67889999999999999999876   3321    1234799999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCC--ChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCc
Q 010536          119 MEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQEN--KIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGV  196 (508)
Q Consensus       119 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (508)
                      ++||+++|++++|++|.++.+++.++++.++++++|++..  ....+....   ....+.++.++...          ..
T Consensus        83 ~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~----------~~  149 (552)
T PRK09274         83 TFALFKAGAVPVLVDPGMGIKNLKQCLAEAQPDAFIGIPKAHLARRLFGWG---KPSVRRLVTVGGRL----------LW  149 (552)
T ss_pred             HHHHHHcCeEEEEcCCCccHHHHHHHHHhcCCCEEEeccHHHHHHHHhccC---ccchhheecccccc----------cc
Confidence            9999999999999999999999999999999999998752  111111111   01222233322110          00


Q ss_pred             eeeeHHHHHhcC-CCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecCh
Q 010536          197 SCFSWEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPL  275 (508)
Q Consensus       197 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl  275 (508)
                      ....++++.... ...........+++++++|||||||.||+|.++|+++...+......+     .+..+++.++.+|+
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~pl  224 (552)
T PRK09274        150 GGTTLATLLRDGAAAPFPMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDY-----GIEPGEIDLPTFPL  224 (552)
T ss_pred             CCccHHHhcccCccccCCCCCCCCCCeEEEEECCCCCCCCceEEecHHHHHHHHHHHHHHh-----CCCCCceeeeccCH
Confidence            112344443221 112223345678999999999999999999999999999888877666     67788999999999


Q ss_pred             HHHHHHHHHHHHHHcCcEEEEec--------CCHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHH
Q 010536          276 AHIYDQIIETHCIHKGCSIGFWR--------GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEF  347 (508)
Q Consensus       276 ~~~~g~~~~~~~l~~G~~~~~~~--------~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~  347 (508)
                      +|.+++       ..|.++++..        +++..+++.++++++|+++++|++++.|++.....              
T Consensus       225 ~~~~~~-------~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~--------------  283 (552)
T PRK09274        225 FALFGP-------ALGMTSVIPDMDPTRPATVDPAKLFAAIERYGVTNLFGSPALLERLGRYGEAN--------------  283 (552)
T ss_pred             HHhhhh-------hhCCeEEecCcccccccccCHHHHHHHHHHcCCeEEeccHHHHHHHHHHhhhc--------------
Confidence            886553       3477776653        27899999999999999999999999987632211              


Q ss_pred             HHHHHhhhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhc--CCceeeecccccCCccee
Q 010536          348 AYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS--GAPLTQGYGLTESCSGCF  425 (508)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~--~~~v~~~YG~TE~~~~~~  425 (508)
                                             ..++        +++|.+++||+++++++.+++++.+  |..+++.||+||++++++
T Consensus       284 -----------------------~~~~--------~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~  332 (552)
T PRK09274        284 -----------------------GIKL--------PSLRRVISAGAPVPIAVIERFRAMLPPDAEILTPYGATEALPISS  332 (552)
T ss_pred             -----------------------CCCC--------chhhEEEecCCcCCHHHHHHHHHHcCCCceEEccccccccceeEe
Confidence                                   0112        3799999999999999999999998  469999999999987665


Q ss_pred             eccCC---------CCcccCccccccCCeEEEEeecCCCC-------ccCCCCCCCCeEEEecCcccccccCCccccccc
Q 010536          426 TSLAD---------VFNMIGTVGVPMTTVEARLESVPEMG-------YDALSSVPRGEICLRGNTLFSGYYKRPDLTEEV  489 (508)
Q Consensus       426 ~~~~~---------~~~~~~s~G~p~~~~~~~i~d~~~~~-------~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~  489 (508)
                      .....         ......++|+|+|+++++|+| +++.       ..++..|+.|||+|+|+.++.||+++++.+...
T Consensus       333 ~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~ivd-~~~~~~~~~~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~t~~~  411 (552)
T PRK09274        333 IESREILFATRAATDNGAGICVGRPVDGVEVRIIA-ISDAPIPEWDDALRLATGEIGEIVVAGPMVTRSYYNRPEATRLA  411 (552)
T ss_pred             ecchhhhccccccccCCCCcccCccCCCceEEEEe-ccccccccccccccCCCCCeeEEEEecCcccccccCChHHhhhh
Confidence            43322         011224789999999999998 4221       123445689999999999999999999988876


Q ss_pred             c---cCC--ccccCcEEEEcCCCC
Q 010536          490 I---VDG--WFHTGDIGEWQPMEL  508 (508)
Q Consensus       490 ~---~~g--w~~TGDlg~~d~dG~  508 (508)
                      |   .+|  ||+|||+|++|+||+
T Consensus       412 ~~~~~~g~~w~~TGDlg~~d~dG~  435 (552)
T PRK09274        412 KIPDGQGDVWHRMGDLGYLDAQGR  435 (552)
T ss_pred             hcccCCCCcEEEcCCEEEEccCCc
Confidence            6   356  999999999999985

>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated

Probab=100.00  E-value=1.3e-50  Score=420.50  Aligned_cols=401  Identities=21%  Similarity=0.280  Sum_probs=320.7

Q ss_pred             CCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHHH
Q 010536           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (508)
Q Consensus        42 ~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~lA  121 (508)
                      ..++.++|++.++++|+++|+++.   +. .+.++.+||.||.++++++|.+|.++|+++||+|+++++|+++++++++|
T Consensus         6 ~~~l~~~~~~~a~~~p~~~a~~~~---~~-~~~~~~~ty~~l~~~v~~la~~L~~~g~~~~~~v~i~~~n~~~~~~~~la   81 (517)
T PRK08008          6 GQHLRQMWDDLADVYGHKTALIFE---SS-GGVVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFG   81 (517)
T ss_pred             cccHHHHHHHHHHHCCCceEEEcc---cC-CCccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence            468999999999999999999876   43 34557899999999999999999999999999999999999999999999


Q ss_pred             HHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCceeeeH
Q 010536          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW  201 (508)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (508)
                      |+++|+++++++|..+.+++.++++.++++++|++......+.+.........+.++........        .....++
T Consensus        82 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~  153 (517)
T PRK08008         82 LAKIGAIMVPINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQEDATPLRHICLTRVALPA--------DDGVSSF  153 (517)
T ss_pred             HHHcCeEEEEcCcccCHHHHHHHHHhcCceEEEEecchhHHHHHHHhhccccCcEEEEecCCCcc--------cccccCH
Confidence            99999999999999999999999999999999999887766655443333444555554432110        0123345


Q ss_pred             HHHHhcCCC-CCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHH
Q 010536          202 EEFLQLGTL-DCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD  280 (508)
Q Consensus       202 ~~~~~~~~~-~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g  280 (508)
                      ++....... .....+...+++++++|||||||.||+|.++|.++..........     ..+..++++++.+|++|..+
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~-----~~~~~~~~~~~~~p~~~~~~  228 (517)
T PRK08008        154 TQLKAQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQ-----CALRDDDVYLTVMPAFHIDC  228 (517)
T ss_pred             HHHhccCCccccccCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHhhh-----cCCCCCCeEEEecCcHHHHH
Confidence            554433311 112233456899999999999999999999999998654432222     24678899999999999877


Q ss_pred             HH-HHHHHHHcCcEEEEecC-CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhc
Q 010536          281 QI-IETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKK  358 (508)
Q Consensus       281 ~~-~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (508)
                      .. .++.++..|+++++.+. ++..+++.++++++|++.++|.+++.++....                           
T Consensus       229 ~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~---------------------------  281 (517)
T PRK08008        229 QCTAAMAAFSAGATFVLLEKYSARAFWGQVCKYRATITECIPMMIRTLMVQPP---------------------------  281 (517)
T ss_pred             HHHHHHHHHhcCcEEEEccccCHHHHHHHHHHcCCcEEechHHHHHHHHhCCC---------------------------
Confidence            66 47778999999999875 89999999999999999999999988753110                           


Q ss_pred             CCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCcceeeccCCCCcccCcc
Q 010536          359 GMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTV  438 (508)
Q Consensus       359 ~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~s~  438 (508)
                             .+.   ...        ..++.+.++ .+++++....|.+.++.++++.||+||+++.++..........+++
T Consensus       282 -------~~~---~~~--------~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~  342 (517)
T PRK08008        282 -------SAN---DRQ--------HCLREVMFY-LNLSDQEKDAFEERFGVRLLTSYGMTETIVGIIGDRPGDKRRWPSI  342 (517)
T ss_pred             -------ccc---ccc--------ccceeeEEe-cCCCHHHHHHHHHHhCCeEEeeccccccccccccCCccccccCCcc
Confidence                   000   000        256777765 4789999999999889999999999999876665544444445789


Q ss_pred             ccccCCeEEEEeecCCCCccCCCCCCCCeEEEec---CcccccccCCcccccccc-cCCccccCcEEEEcCCCC
Q 010536          439 GVPMTTVEARLESVPEMGYDALSSVPRGEICLRG---NTLFSGYYKRPDLTEEVI-VDGWFHTGDIGEWQPMEL  508 (508)
Q Consensus       439 G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g---~~v~~gY~~~~~~~~~~~-~~gw~~TGDlg~~d~dG~  508 (508)
                      |.|+++++++|+| +++..++.  |+.|||+++|   +.++.||+++++.+.+.| .+|||+|||+|++|+||+
T Consensus       343 G~~~~g~~~~i~d-~~~~~~~~--g~~Gel~v~g~~~~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~  413 (517)
T PRK08008        343 GRPGFCYEAEIRD-DHNRPLPA--GEIGEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTGDTGYVDEEGF  413 (517)
T ss_pred             ccCCCCcEEEEEC-CCCCCCCC--CCcceEEEeCCCCcchhhhHhCChHHHhhcccCCCCeeccceEEECCCCc
Confidence            9999999999999 77766655  4899999998   689999999999999888 689999999999999985

>PRK05620 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.6e-50  Score=422.87  Aligned_cols=413  Identities=19%  Similarity=0.274  Sum_probs=324.3

Q ss_pred             CCCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHh-CCCCCCCEEEEEcCCcHhHHH
Q 010536           39 PAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRS-RGVNPGDRCGIYGSNCPEWII  117 (508)
Q Consensus        39 ~~~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~-~gv~~gd~Vai~~~n~~~~~~  117 (508)
                      .+...|+.++|++.+..+|+++|+++.   +.   .++.+||+||.+++.++|.+|.+ .|+++||+|+++++|++++++
T Consensus         6 ~~~~~~~~~~l~~~a~~~~~~~a~~~~---~~---~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~~~~~n~~e~~~   79 (576)
T PRK05620          6 QDVPLSLTRILEYGSTVHGDTTVTTWG---GA---EQEQTTFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLE   79 (576)
T ss_pred             hcCCCcHHHHHHHHHHhCCCceEEEEc---CC---ceEEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHH
Confidence            344578999999999999999999864   22   24789999999999999999986 799999999999999999999


Q ss_pred             HHHHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCce
Q 010536          118 AMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS  197 (508)
Q Consensus       118 ~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (508)
                      +++||+++|+++++++|..+.+++.++++.++++++|+++.....+.+.... ....+.++.++................
T Consensus        80 ~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~  158 (576)
T PRK05620         80 VLFAVACMGAVFNPLNKQLMNDQIVHIINHAEDEVIVADPRLAEQLGEILKE-CPCVRAVVFIGPSDADSAAAHMPEGIK  158 (576)
T ss_pred             HHHHHHhcCCEEeecccccCHHHHHHHHhccCCcEEEEChhhHHHHHHHHhh-CccccEEEEecCcccccchhccccccc
Confidence            9999999999999999999999999999999999999998776665444332 234455555543221110001111223


Q ss_pred             eeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHH
Q 010536          198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAH  277 (508)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~  277 (508)
                      ..+|+++.+............++++++++|||||||.||+|.++|+++..........   ....+..++++++.+|++|
T Consensus       159 ~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~---~~~~~~~~~~~l~~~pl~h  235 (576)
T PRK05620        159 VYSYEALLDGRSTVYDWPELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTT---DSLAVTHGESFLCCVPIYH  235 (576)
T ss_pred             cccHHHHhhcCCCcCCCCCCCccceeEEEECCCCCCCCceEEEEcHHHHHHHHHhhhh---hhcCCCCCCeEEEeCChHH
Confidence            4567787765432223334567899999999999999999999999986554432211   0125778999999999999


Q ss_pred             HHHHHHHHHHHHcCcEEEEec--CCHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhh
Q 010536          278 IYDQIIETHCIHKGCSIGFWR--GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGN  355 (508)
Q Consensus       278 ~~g~~~~~~~l~~G~~~~~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (508)
                      .+++...+.++..|+++++..  +++..+++.++++++|+++++|+++..++.......                     
T Consensus       236 ~~g~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---------------------  294 (576)
T PRK05620        236 VLSWGVPLAAFMSGTPLVFPGPDLSAPTLAKIIATAMPRVAHGVPTLWIQLMVHYLKNP---------------------  294 (576)
T ss_pred             hhhhHHHHHHHhcCceEEecCCCCCHHHHHHHHHHhcCceeeecCHHHHHHHHHhhccC---------------------
Confidence            999988888999999998875  389999999999999999999999988764321100                     


Q ss_pred             hhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCcceeeccCCC----
Q 010536          356 MKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADV----  431 (508)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~----  431 (508)
                                      .+.        .++|.+++||+++++++.+.|++.+|.++++.||+||++..+.......    
T Consensus       295 ----------------~~~--------~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~  350 (576)
T PRK05620        295 ----------------PER--------MSLQEIYVGGSAVPPILIKAWEERYGVDVVHVWGMTETSPVGTVARPPSGVSG  350 (576)
T ss_pred             ----------------ccc--------CceeEEEEcCCCCCHHHHHHHHHHhCCceeeeccccccccceeeeccCCcccc
Confidence                            000        2799999999999999999999989999999999999987765543321    


Q ss_pred             ---CcccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccc----------------cccc-c
Q 010536          432 ---FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLT----------------EEVI-V  491 (508)
Q Consensus       432 ---~~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~----------------~~~~-~  491 (508)
                         .....++|++.++++++|++ + +..++...++.|||+++|+.++.||+++++.+                .+.| .
T Consensus       351 ~~~~~~~~~~G~~~~~~~~~i~~-~-g~~~~~~~~~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~f~~~~~~~~~~~~~~  428 (576)
T PRK05620        351 EARWAYRVSQGRFPASLEYRIVN-D-GQVMESTDRNEGEIQVRGNWVTASYYHSPTEEGGGAASTFRGEDVEDANDRFTA  428 (576)
T ss_pred             ccccccccccCCcCCceeEEEec-C-CccccCCCCCceEEEEEcCcccccccCCccccccccccccccccchhhhccccc
Confidence               01124789999999999999 5 65555445578999999999999999999877                2233 4


Q ss_pred             CCccccCcEEEEcCCCC
Q 010536          492 DGWFHTGDIGEWQPMEL  508 (508)
Q Consensus       492 ~gw~~TGDlg~~d~dG~  508 (508)
                      +|||+|||+|++|+||+
T Consensus       429 ~g~~~TGD~~~~~~dg~  445 (576)
T PRK05620        429 DGWLRTGDVGSVTRDGF  445 (576)
T ss_pred             CCcEecCceEEEcCCce
Confidence            78999999999999984

>PRK07638 acyl-CoA synthetase; Validated

Probab=100.00  E-value=7.6e-51  Score=418.86  Aligned_cols=374  Identities=16%  Similarity=0.177  Sum_probs=307.9

Q ss_pred             CCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHHHH
Q 010536           43 ESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC  122 (508)
Q Consensus        43 ~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~lA~  122 (508)
                      +++.+.|+++++++|+++|+.+.   +      +.+||.||.++++++|.+|.+.|. +|++|+++++|+++++++++||
T Consensus         1 ~~~~~~~~~~a~~~p~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~~~-~~~~v~i~~~~~~~~~~~~la~   70 (487)
T PRK07638          1 MGITKEYKKHASLQPNKIAIKEN---D------RVLTYKDWFESVCKVANWLNEKES-KNKTIAILLENRIEFLQLFAGA   70 (487)
T ss_pred             CChHHHHHHHHHhCCCCeEEecC---C------cEeeHHHHHHHHHHHHHHHHHhCC-CCCEEEEEcCCCHHHHHHHHHH
Confidence            36789999999999999999865   3      479999999999999999999985 8999999999999999999999


Q ss_pred             HHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCceeeeHH
Q 010536          123 NSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWE  202 (508)
Q Consensus       123 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (508)
                      +++|++++|+++.++.+++..+++.++++++|++......+...      . ..++..+                  .+.
T Consensus        71 ~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~------~-~~~~~~~------------------~~~  125 (487)
T PRK07638         71 AMAGWTCVPLDIKWKQDELKERLAISNADMIVTERYKLNDLPDE------E-GRVIEID------------------EWK  125 (487)
T ss_pred             HHcCeEEEecCccCCHHHHHHHHHhCCCCEEEEecccccchhhc------c-ceEEEeh------------------hhh
Confidence            99999999999999999999999999999999998654433210      0 1122211                  111


Q ss_pred             HHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHH
Q 010536          203 EFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQI  282 (508)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~  282 (508)
                      +................+++++|+|||||||.||+|.++|.+++..+......+     .+..+|+++...|++|..++.
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~d~~~~~~~l~~~~~l~  200 (487)
T PRK07638        126 RMIEKYLPTYAPIENVQNAPFYMGFTSGSTGKPKAFLRAQQSWLHSFDCNVHDF-----HMKREDSVLIAGTLVHSLFLY  200 (487)
T ss_pred             hhhhhccccccccccCCCCcEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhc-----CcCCCCEEEEeecchHHHHHH
Confidence            111111111111222346789999999999999999999999998888766655     678899999999999998877


Q ss_pred             HHHHHHHcCcEEEEecC-CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhcCCC
Q 010536          283 IETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMP  361 (508)
Q Consensus       283 ~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (508)
                      ..+.+++.|+++++.+. ++..+++.++++++|+++++|+++..+.+..                               
T Consensus       201 ~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-------------------------------  249 (487)
T PRK07638        201 GAISTLYVGQTVHLMRKFIPNQVLDKLETENISVMYTVPTMLESLYKEN-------------------------------  249 (487)
T ss_pred             HHHHHHccCcEEEEcCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCc-------------------------------
Confidence            78889999999998874 8999999999999999999999999886520                               


Q ss_pred             CCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhc-CCceeeecccccCCcceeeccCCCCcccCcccc
Q 010536          362 QNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESCSGCFTSLADVFNMIGTVGV  440 (508)
Q Consensus       362 ~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~~~~~~~s~G~  440 (508)
                           .    .         ..+.+.++++|+++++++.+++.+.+ +..+++.||+||++.++...........+++|+
T Consensus       250 -----~----~---------~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~  311 (487)
T PRK07638        250 -----R----V---------IENKMKIISSGAKWEAEAKEKIKNIFPYAKLYEFYGASELSFVTALVDEESERRPNSVGR  311 (487)
T ss_pred             -----C----c---------CCceeEEEEcCCCCCHHHHHHHHHHcCCCeEEEEecCCccCceEEecccccCCCCCCCCc
Confidence                 0    0         01456678889999999999999988 789999999999998766555443444579999


Q ss_pred             ccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccccCCccccCcEEEEcCCCC
Q 010536          441 PMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQPMEL  508 (508)
Q Consensus       441 p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDlg~~d~dG~  508 (508)
                      |+++++++|+| ++|..++.  |+.|||+|+|+.++.||+++++.+.+.+.+|||+|||+|++|+||+
T Consensus       312 ~~~~~~~~i~d-~~g~~~~~--g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~d~~g~  376 (487)
T PRK07638        312 PFHNVQVRICN-EAGEEVQK--GEIGTVYVKSPQFFMGYIIGGVLARELNADGWMTVRDVGYEDEEGF  376 (487)
T ss_pred             ccCCcEEEEEC-CCCCCCCC--CCCeEEEEecccceeeecCCHHHHhhhccCCcEecCccEeEcCCCe
Confidence            99999999999 77776654  5899999999999999999998887777899999999999999985

>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=2e-52  Score=381.51  Aligned_cols=394  Identities=20%  Similarity=0.232  Sum_probs=333.3

Q ss_pred             CCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHH
Q 010536           41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME  120 (508)
Q Consensus        41 ~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~l  120 (508)
                      ...++.++|..+|+++||++|+++.   +      +.+||+||.++++++|..|+++|+++||+|.+.+||..++++++|
T Consensus        26 ~d~~l~d~L~~~A~~~pdriAv~d~---~------~~~sY~eLdqr~d~LAa~l~~lGi~~Gd~vlvQLpN~~ef~~~~F   96 (542)
T COG1021          26 QDRTLTDILTDHAARYPDRIAVIDG---E------RRLSYAELDQRADRLAAGLRRLGIKPGDTVLVQLPNVAEFYITFF   96 (542)
T ss_pred             cCCcHHHHHHHHHhhcCCceEEecC---c------ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCchHHHHHHHH
Confidence            3589999999999999999999975   3      469999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCCh----hhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCc
Q 010536          121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI----PSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGV  196 (508)
Q Consensus       121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (508)
                      |++++|+.+|.--|.....+|.++.+.++++.+|.++...    ..+....-...+.++.+++.++....          
T Consensus        97 ALlrlGv~PVlALpsHr~~Ei~~f~~~~e~~~~i~~~~~~gFd~~~~ar~~~a~~~tlr~v~v~ge~~~~----------  166 (542)
T COG1021          97 ALLRLGVAPVLALPSHRASELGAFASQIEAALLIVARQHSGFDYRPFARELVAKHPTLRHVIVAGEAEHP----------  166 (542)
T ss_pred             HHHHcCcchhhccchhhHHHHHHHHHhhcchheeechhhcccCcHHHHHHHHhhCCcceEEEEccCCCCc----------
Confidence            9999999999988889999999999999999999886422    23333333445788888887554321          


Q ss_pred             eeeeHHHHHhcC-CCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecCh
Q 010536          197 SCFSWEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPL  275 (508)
Q Consensus       197 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl  275 (508)
                        ...+..+... ....+..+.+.++++++..+.||||.||-|..+|.....++..-.+.|     .+....+++|.+|.
T Consensus       167 --~~~~~~~~~~a~~~~~a~~~~~~~vA~fqLSGGTTGtPKLIPRtH~DY~Ysv~aSaEiC-----~~~~~tvyL~~LP~  239 (542)
T COG1021         167 --SVLEAALCHPAGLFTPAPPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEIC-----GFDQQTVYLCALPA  239 (542)
T ss_pred             --chhhhhhhCccccCCcCCCCCCCceEEEEecCCCCCCCccccccccceeeeeeehhhhh-----CcCccceEEEeccc
Confidence              1222233333 334446677889999999999999999999999999999999988888     88899999999999


Q ss_pred             HHHHHHHH--HHHHHHcCcEEEEecC-CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHH
Q 010536          276 AHIYDQII--ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYK  352 (508)
Q Consensus       276 ~~~~g~~~--~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (508)
                      .|.+.+..  .+..++.|+++|+.+. +++.-+.+|+++++|++..+|.....|+.....                    
T Consensus       240 AHNfplssPG~LGv~~agG~VVla~~psp~~~F~lIerh~Vt~tALVPpla~LWlqa~e~--------------------  299 (542)
T COG1021         240 AHNFPLSSPGALGVFLAGGTVVLAPDPSPELCFPLIERHGVTVTALVPPLASLWLQAAEW--------------------  299 (542)
T ss_pred             ccCCCCCCcchhheeeeccEEEECCCCCHHHHHHHHHHhccceEEeccHHHHHHHHhhhc--------------------
Confidence            99999885  7889999999999875 999999999999999999999999888764321                    


Q ss_pred             hhhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCcceeeccCCCC
Q 010536          353 LGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVF  432 (508)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~  432 (508)
                                       ...+++        |||.+-+||+.+++++.+++...+|+.+.+.+||.|.-...+.-.+...
T Consensus       300 -----------------~~~~Ls--------SLrllQVGGarl~~~~Arrv~~~lgC~LQQVFGMAEGLvnyTRLDDp~E  354 (542)
T COG1021         300 -----------------ERADLS--------SLRLLQVGGARLSATLARRVPAVLGCQLQQVFGMAEGLVNYTRLDDPPE  354 (542)
T ss_pred             -----------------ccCCch--------heeEEeecCcccCHHHHhhchhhhCchHHHHhhhhhhhhcccccCCchH
Confidence                             223444        9999999999999999999999999999999999995443332222223


Q ss_pred             cccCcccccc-CCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccc-cCCccccCcEEEEcCCCC
Q 010536          433 NMIGTVGVPM-TTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGDIGEWQPMEL  508 (508)
Q Consensus       433 ~~~~s~G~p~-~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~-~~gw~~TGDlg~~d~dG~  508 (508)
                      ....+-|+|+ |.-+++|+| .||++++.|  |+|+|..+||..++|||+.|+.+.++| .+|||+|||+.++|+|||
T Consensus       355 ~i~~TQGrPlsP~DEvrvvD-~dg~pv~pG--E~G~LltRGPYTirGYyrap~HNa~aF~a~GFYrsGD~V~~~~dGy  429 (542)
T COG1021         355 IIIHTQGRPLSPDDEVRVVD-ADGNPVAPG--EVGELLTRGPYTIRGYYRAPEHNARAFDADGFYRSGDLVRRDPDGY  429 (542)
T ss_pred             heeecCCCcCCCcceeEEec-CCCCCCCCC--CcceeeecCCeeeeeeccCchhhhhccCcCCceecCceeEecCCce
Confidence            3346789997 789999999 888866655  999999999999999999999999999 899999999999999997

>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase

Probab=100.00  E-value=1.3e-50  Score=420.93  Aligned_cols=393  Identities=19%  Similarity=0.200  Sum_probs=312.9

Q ss_pred             CCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHHH
Q 010536           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (508)
Q Consensus        42 ~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~lA  121 (508)
                      ..++.++|+++++.+|+++|+++.   +      +.+||+||.++++++|.+|.+.|+++||+|+++++|+++++++++|
T Consensus        22 ~~~l~~~~~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la   92 (527)
T TIGR02275        22 DKPLTDILRDQAARYPDAIAIICG---N------RQWSYRELDQRADNLAAGLTKLGIGQGDTAVVQLPNIAEFYIVFFA   92 (527)
T ss_pred             CCcHHHHHHHHHHHCCCceEEEeC---C------ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHH
Confidence            567999999999999999999864   3      5799999999999999999999999999999999999999999999


Q ss_pred             HHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChh----hHhhcCccCCCCccEEEEecCCCchhhhhhhhcCce
Q 010536          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP----SILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS  197 (508)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (508)
                      |+++|++++++++..+.+++.++++.++++++++++....    ...+......+.++.++........           
T Consensus        93 ~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------  161 (527)
T TIGR02275        93 LLKLGIAPVLALFSHRKSELTAYAQQIEPALYIIDRAHSLFDYDAFARQLQSKLPTLRNIIVAGQTRVE-----------  161 (527)
T ss_pred             HHHcCeEEeccccccCHHHHHHHHHhcCCcEEEEcCcccccchHHHHHHHHhhCCcceEEEEecCCCCc-----------
Confidence            9999999999999999999999999999999999875421    1111111112233444443221100           


Q ss_pred             eeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHH
Q 010536          198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAH  277 (508)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~  277 (508)
                       .....................+++++++|||||||.||+|.++|.++..++......+     .+..++++++.+|++|
T Consensus       162 -~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~P~~h  235 (527)
T TIGR02275       162 -AELFLWLESPAEPVKFPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEIC-----WLTQQTRYLCALPAAH  235 (527)
T ss_pred             -chhhHHhhCcCccccCCCCCCCccEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhc-----CCCcCCEEEECCChHh
Confidence             0111111111111222345678999999999999999999999999999888876665     6778999999999999


Q ss_pred             HHHHHH--HHHHHHcCcEEEEecC-CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhh
Q 010536          278 IYDQII--ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLG  354 (508)
Q Consensus       278 ~~g~~~--~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (508)
                      .+++..  .+.++..|+++++.+. ++..+++.++++++|++.++|.+++.+++......                    
T Consensus       236 ~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~--------------------  295 (527)
T TIGR02275       236 NYPLSSPGALGVFYAGGCVVLAPDPSPTDCFPLIERHKVTVTALVPPAVALWMQAASKSR--------------------  295 (527)
T ss_pred             hhhhhHHHHHHHHhcCCeEEECCCCCHHHHHHHHHHhCCeEEEecHHHHHHHHhCccccC--------------------
Confidence            999874  6778999999988764 89999999999999999999999988765321100                    


Q ss_pred             hhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCcceeeccCCCCcc
Q 010536          355 NMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNM  434 (508)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~  434 (508)
                                       .++        +++|.+++||+++++++.+++.+.+|.++++.||+||++.............
T Consensus       296 -----------------~~~--------~~lr~~~~gG~~l~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~~  350 (527)
T TIGR02275       296 -----------------YDL--------SSLKLLQVGGAKFSEAAARRVPAVFGCQLQQVFGMAEGLVNYTRLDDPAEII  350 (527)
T ss_pred             -----------------CCc--------cceEEEEEcCCCCCHHHHHHHHHHhCCeEEeeeccCccCccccCCCCccccc
Confidence                             011        2899999999999999999999989999999999999654433221112223


Q ss_pred             cCcccccc-CCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccc-cCCccccCcEEEEcCCCC
Q 010536          435 IGTVGVPM-TTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGDIGEWQPMEL  508 (508)
Q Consensus       435 ~~s~G~p~-~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~-~~gw~~TGDlg~~d~dG~  508 (508)
                      .+++|+|+ ++.+++|+| +++...+.  |+.|||+++|+.++.||+++++.+.+.| .+|||+|||+|++|+||+
T Consensus       351 ~~~~G~~~~~~~~v~i~d-~~g~~~~~--g~~Gei~v~g~~~~~gY~~~~~~~~~~~~~dg~~~TGDl~~~~~~g~  423 (527)
T TIGR02275       351 FTTQGRPMSPDDEVRVVD-DHGNPVAP--GETGMLLTRGPYTFRGYYKAPEHNAAAFDAEGFYYTGDLVRLTPEGY  423 (527)
T ss_pred             cccCCCCCCCCceEEEEC-CCCCCCCC--CCceEEEecCCccchhhcCChhHhHhhcCcCCCEEcCceEEEcCCcc
Confidence            46899999 489999999 77765554  4899999999999999999999998888 689999999999999985

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.

>PRK05605 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.6e-50  Score=424.59  Aligned_cols=407  Identities=25%  Similarity=0.408  Sum_probs=320.5

Q ss_pred             CCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHHH
Q 010536           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (508)
Q Consensus        42 ~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~lA  121 (508)
                      ..++.++++++++++|+++|+.+.   +      +.+||.||.++++++|++|.+.|+++||+|+++++|+++++++++|
T Consensus        31 ~~~l~~~~~~~~~~~p~~~a~~~~---~------~~~Ty~ql~~~~~~~A~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA  101 (573)
T PRK05605         31 DTTLVDLYDNAVARFGDRPALDFF---G------ATTTYAELGKQVRRAAAGLRALGVRPGDRVAIVLPNCPQHIVAFYA  101 (573)
T ss_pred             cCCHHHHHHHHHHHCCCCeEEEeC---C------CcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHH
Confidence            458999999999999999999875   3      4699999999999999999999999999999999999999999999


Q ss_pred             HHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhh------------
Q 010536          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKK------------  189 (508)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  189 (508)
                      |+++|++++|++|.++.+++.+++++++++++|+++.....+.+....  .....++.++........            
T Consensus       102 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  179 (573)
T PRK05605        102 VLRLGAVVVEHNPLYTAHELEHPFEDHGARVAIVWDKVAPTVERLRRT--TPLETIVSVNMIAAMPLLQRLALRLPIPAL  179 (573)
T ss_pred             HHhcCcEEeecCcCCCHHHHHHHHhccCCcEEEechhhHHHHHhhhhc--cccceeEeeecccccccccccccccccccc
Confidence            999999999999999999999999999999999988765544332211  122333333211000000            


Q ss_pred             -----hhhhcCceeeeHHHHHhcCCCC----CCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhcc
Q 010536          190 -----EAEELGVSCFSWEEFLQLGTLD----CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTG  260 (508)
Q Consensus       190 -----~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~  260 (508)
                           ...........|+++.......    ........+++++++|||||||.||+|.++|+++...+......+   .
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~---~  256 (573)
T PRK05605        180 RKARAALTGPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWV---P  256 (573)
T ss_pred             cccccccccCCCcceeHHHHhhccccccccccCCCCCCCCCEEEEEcCCCCCCCCcEEEEecHHHHHHHHHHHhhc---c
Confidence                 0000011234566655443111    122335678999999999999999999999999988776543332   1


Q ss_pred             ccCCCCcEEEEecChHHHHHHHH-HHHHHHcCcEEEEecC-CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCC
Q 010536          261 KVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGG  338 (508)
Q Consensus       261 ~~~~~~~~~l~~~pl~~~~g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~  338 (508)
                      .....++++++.+|++|.+|+.. .+.+++.|+++++.+. +++.+++.++++++|++.++|.+++.+++....      
T Consensus       257 ~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~------  330 (573)
T PRK05605        257 GLGDGPERVLAALPMFHAYGLTLCLTLAVSIGGELVLLPAPDIDLILDAMKKHPPTWLPGVPPLYEKIAEAAEE------  330 (573)
T ss_pred             ccCCCCcEEEEecChHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCEEEEchHHHHHHHHhCccc------
Confidence            11234789999999999999875 5678899999988874 999999999999999999999999998752211      


Q ss_pred             hhHHHHHHHHHHHHhhhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccc
Q 010536          339 ALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLT  418 (508)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~T  418 (508)
                                                     ...++        +++|.+++||+++++++.+.+.+.++..+++.||+|
T Consensus       331 -------------------------------~~~~~--------~~lr~i~~gg~~l~~~~~~~~~~~~~~~i~~~YG~T  371 (573)
T PRK05605        331 -------------------------------RGVDL--------SGVRNAFSGAMALPVSTVELWEKLTGGLLVEGYGLT  371 (573)
T ss_pred             -------------------------------cCCCc--------hhccEEEECCCcCCHHHHHHHHHHhCCCeecccccc
Confidence                                           01112        279999999999999999999998899999999999


Q ss_pred             cCCcceeeccCCCCcccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccccCCccccC
Q 010536          419 ESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTG  498 (508)
Q Consensus       419 E~~~~~~~~~~~~~~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~~~gw~~TG  498 (508)
                      |+++++..........++++|+|+++++++|+| +++...++..|+.|||+++|+.++.||+++++.+.+.|.+|||+||
T Consensus       372 E~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TG  450 (573)
T PRK05605        372 ETSPIIVGNPMSDDRRPGYVGVPFPDTEVRIVD-PEDPDETMPDGEEGELLVRGPQVFKGYWNRPEETAKSFLDGWFRTG  450 (573)
T ss_pred             hhchhhhcCCcccCCcCCccccCCCCCEEEEEc-CCCCCccCCCCCeeEEEEecCchhhhhcCChhHhhhcccCCCcccC
Confidence            998877665544444458999999999999999 6542233345589999999999999999999999999988999999


Q ss_pred             cEEEEcCCCC
Q 010536          499 DIGEWQPMEL  508 (508)
Q Consensus       499 Dlg~~d~dG~  508 (508)
                      |+|++|++|+
T Consensus       451 D~~~~~~~g~  460 (573)
T PRK05605        451 DVVVMEEDGF  460 (573)
T ss_pred             CEEEEcCCCc
Confidence            9999999985

>PRK08316 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.6e-50  Score=420.61  Aligned_cols=398  Identities=24%  Similarity=0.326  Sum_probs=325.6

Q ss_pred             CCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHH
Q 010536           41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME  120 (508)
Q Consensus        41 ~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~l  120 (508)
                      ...++.++|.+.++++|+++|+++.   +      +.+||.||.+++.++|..|.+.|+++||+|+++++|+++++++++
T Consensus         9 ~~~~l~~~l~~~a~~~~~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~gi~~~~~V~l~~~~~~~~~~~~~   79 (523)
T PRK08316          9 RRQTIGDILRRSARRYPDKTALVFG---D------RSWTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWL   79 (523)
T ss_pred             cCCCHHHHHHHHHHHCCCCeEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence            4578999999999999999999876   4      579999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCceeee
Q 010536          121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFS  200 (508)
Q Consensus       121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (508)
                      ||+++|++++|+++..+.+++..+++.+++++++++......+.+......  ...+.......      .......+..
T Consensus        80 a~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~--~~~~~~~~~~~------~~~~~~~~~~  151 (523)
T PRK08316         80 ACARAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPALAPTAEAALALLP--VDTLILSLVLG------GREAPGGWLD  151 (523)
T ss_pred             HHHhcCcEEEecccccCHHHHHHHHHhCCCCEEEEccchHHHHHHHhhhcC--ccceeeeeccc------ccccccchhh
Confidence            999999999999999999999999999999999999887766544332211  11111110000      0011122345


Q ss_pred             HHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHH
Q 010536          201 WEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD  280 (508)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g  280 (508)
                      ++++...............+++++++|||||||.||+|.++|.+++..+......+     .+..+++++..+|++|..+
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~p~~h~~g  226 (523)
T PRK08316        152 FADWAEAGSVAEPDVELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVAG-----DMSADDIPLHALPLYHCAQ  226 (523)
T ss_pred             HHHHHhcCCCccCccCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHHh-----CCCCCceEEEccCCchhhh
Confidence            55555443222234456778999999999999999999999999998887766655     7888999999999999999


Q ss_pred             HHH-HHHHHHcCcEEEEec-CCHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhc
Q 010536          281 QII-ETHCIHKGCSIGFWR-GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKK  358 (508)
Q Consensus       281 ~~~-~~~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (508)
                      +.. .+.++..|+++++.+ .++..+++.++++++|++.++|.++..+++...                           
T Consensus       227 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~---------------------------  279 (523)
T PRK08316        227 LDVFLGPYLYVGATNVILDAPDPELILRTIEAERITSFFAPPTVWISLLRHPD---------------------------  279 (523)
T ss_pred             HHHHHHHHHhcCceEEEecCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHcCcc---------------------------
Confidence            875 556788999999986 499999999999999999999999988764210                           


Q ss_pred             CCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhc-CCceeeecccccCCcceeeccCCC-CcccC
Q 010536          359 GMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESCSGCFTSLADV-FNMIG  436 (508)
Q Consensus       359 ~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~~-~~~~~  436 (508)
                                .+..++        .++|.+++||+.++.++.+.+++.+ +..+++.||+||++.++....... ....+
T Consensus       280 ----------~~~~~~--------~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~  341 (523)
T PRK08316        280 ----------FDTRDL--------SSLRKGYYGASIMPVEVLKELRERLPGLRFYNCYGQTEIAPLATVLGPEEHLRRPG  341 (523)
T ss_pred             ----------cccCCc--------ccceEEEEcCCcCCHHHHHHHHHHcCCCceeeeecccccCccccccCccccccccC
Confidence                      111122        2799999999999999999999987 789999999999988766544332 23347


Q ss_pred             ccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccccCCccccCcEEEEcCCCC
Q 010536          437 TVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQPMEL  508 (508)
Q Consensus       437 s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDlg~~d~dG~  508 (508)
                      ++|+|+++++++|+| +++..++.  |+.|||+++|+.++.||+++++.+.+.|.+|||+|||+|++|+||+
T Consensus       342 ~~G~~~~~~~~~i~~-~~~~~~~~--g~~Gei~v~~~~~~~~y~~~~~~~~~~~~~~~~~TGDl~~~~~~g~  410 (523)
T PRK08316        342 SAGRPVLNVETRVVD-DDGNDVAP--GEVGEIVHRSPQLMLGYWDDPEKTAEAFRGGWFHSGDLGVMDEEGY  410 (523)
T ss_pred             CcccCCCCcEEEEEc-CCCCCCCC--CCcceEEEECCchhhhhcCCHHHHHHHhhCCCeeccceEEEcCCce
Confidence            999999999999999 77776665  4899999999999999999999999999999999999999999985

>PRK06839 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.6e-50  Score=417.81  Aligned_cols=381  Identities=24%  Similarity=0.327  Sum_probs=311.6

Q ss_pred             CCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHh-CCCCCCCEEEEEcCCcHhHHHHHHH
Q 010536           43 ESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRS-RGVNPGDRCGIYGSNCPEWIIAMEA  121 (508)
Q Consensus        43 ~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~-~gv~~gd~Vai~~~n~~~~~~~~lA  121 (508)
                      ..+.+.|++.|+.+|+++|+++.   +      +.+||.||.++++++|++|.+ .|+++||+|+++++|+++++++++|
T Consensus         2 ~~~~~~~~~~a~~~p~~~a~~~~---~------~~~ty~~l~~~~~~la~~L~~~~g~~~~~~V~i~~~~~~~~~~~~la   72 (496)
T PRK06839          2 QGIAYWIEKRAYLHPDRIAIITE---E------EEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFA   72 (496)
T ss_pred             ccHHHHHHHHHHHCCCCeEEEEC---C------ceEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHH
Confidence            46789999999999999999864   2      579999999999999999985 7999999999999999999999999


Q ss_pred             HHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCceeeeH
Q 010536          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW  201 (508)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (508)
                      |+++|++++|+++..+.+++..+++.++++++++++.....+.+....  .....++.+.                  ++
T Consensus        73 ~~~~G~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~------------------~~  132 (496)
T PRK06839         73 IAKVECIAVPLNIRLTENELIFQLKDSGTTVLFVEKTFQNMALSMQKV--SYVQRVISIT------------------SL  132 (496)
T ss_pred             HHhcCcEEEecCcccCHHHHHHHHHhcCceEEEEcHHHHHHHHHhhhc--cCcceEEEec------------------ch
Confidence            999999999999999999999999999999999987765544332211  1112222222                  12


Q ss_pred             HHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHH
Q 010536          202 EEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ  281 (508)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~  281 (508)
                      +++....  .........+++++|+|||||||.||+|.++|.++..........+     ....+++++..+|++|.+|+
T Consensus       133 ~~~~~~~--~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~g~  205 (496)
T PRK06839        133 KEIEDRK--IDNFVEKNESASFIICYTSGTTGKPKGAVLTQENMFWNALNNTFAI-----DLTMHDRSIVLLPLFHIGGI  205 (496)
T ss_pred             HhhhccC--CCCCCCCCCCCcEEEEeCCCCCCCCcEEEEEhHHHHHHHHHHHHHc-----CCCCCCeEEEeeCCcchhhH
Confidence            2222221  1122344568899999999999999999999999877666554444     67789999999999999998


Q ss_pred             HH-HHHHHHcCcEEEEecC-CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhcC
Q 010536          282 II-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKG  359 (508)
Q Consensus       282 ~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (508)
                      .. .+.++..|+++++.+. ++..+++.++++++|++.++|.+++.++....                            
T Consensus       206 ~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~----------------------------  257 (496)
T PRK06839        206 GLFAFPTLFAGGVIIVPRKFEPTKALSMIEKHKVTVVMGVPTIHQALINCSK----------------------------  257 (496)
T ss_pred             HHHHHHHHhcCcEEEEccCCCHHHHHHHHHhhCCeEEEehHHHHHHHHhCcc----------------------------
Confidence            75 5678999999988764 99999999999999999999999999865211                            


Q ss_pred             CCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCcceeeccCC-CCcccCcc
Q 010536          360 MPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLAD-VFNMIGTV  438 (508)
Q Consensus       360 ~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~-~~~~~~s~  438 (508)
                               ....++        +++|.+++||+++++++.+.+++. |.++.+.||+||++..+...... .....+++
T Consensus       258 ---------~~~~~~--------~~lr~~~~gG~~~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~  319 (496)
T PRK06839        258 ---------FETTNL--------QSVRWFYNGGAPCPEELMREFIDR-GFLFGQGFGMTETSPTVFMLSEEDARRKVGSI  319 (496)
T ss_pred             ---------cccCCC--------cccceEEECCCCCCHHHHHHHHHh-CCeeEeeccCCCCCcceEecccccccccCCCC
Confidence                     001111        389999999999999999999987 99999999999998765544332 23344899


Q ss_pred             ccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccccCCccccCcEEEEcCCCC
Q 010536          439 GVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQPMEL  508 (508)
Q Consensus       439 G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDlg~~d~dG~  508 (508)
                      |+|+++++++|+| +++..++  .|+.|||+|+|+.++.||+++++.+...+.+|||+|||+|++|++|+
T Consensus       320 G~p~~~~~~~i~d-~~~~~~~--~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~  386 (496)
T PRK06839        320 GKPVLFCDYELID-ENKNKVE--VGEVGELLIRGPNVMKEYWNRPDATEETIQDGWLCTGDLARVDEDGF  386 (496)
T ss_pred             cccCCCceEEEEC-CCcCCCC--CCCceEEEEECCCcchhhcCChHHHHHHHcCCCeeecceEEEcCCCc
Confidence            9999999999999 8887655  45899999999999999999999998888999999999999999985

>PRK06087 short chain acyl-CoA synthetase; Reviewed

Probab=100.00  E-value=4.2e-50  Score=419.24  Aligned_cols=396  Identities=21%  Similarity=0.292  Sum_probs=317.9

Q ss_pred             CCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHH
Q 010536           41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME  120 (508)
Q Consensus        41 ~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~l  120 (508)
                      ...++.++|+..++++|+++|+++.   ++     +.+||+||.++++++|++|.+.|+++||+|+++++|+++++++++
T Consensus        21 ~~~~l~~~~~~~~~~~pd~~a~~~~---~~-----~~~Ty~~l~~~v~~la~~l~~~G~~~gd~V~i~~~n~~~~~~~~l   92 (547)
T PRK06087         21 GDASLADYWQQTARAMPDKIAVVDN---HG-----ASYTYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYL   92 (547)
T ss_pred             CCCCHHHHHHHHHHHCCCceEEEcC---CC-----CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence            4468999999999999999999865   43     479999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCCh-----hhHhhcCccCCCCccEEEEecCCCchhhhhhhhcC
Q 010536          121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI-----PSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELG  195 (508)
Q Consensus       121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (508)
                      ||+++|++++|++|..+.+++..+++.++++++++++...     ..+.... ......+.++.++.....         
T Consensus        93 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---------  162 (547)
T PRK06087         93 ACLKVGAVSVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQ-NQLPQLQQIVGVDKLAPA---------  162 (547)
T ss_pred             HHHHcCcEEeccchhcCHHHHHHHHHhcCCeEEEEecccccccHHHHHHHHH-hhCCCCcEEEEeCCcCCC---------
Confidence            9999999999999999999999999999999999976421     2222221 122334455555432210         


Q ss_pred             ceeeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecCh
Q 010536          196 VSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPL  275 (508)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl  275 (508)
                      .....+.++...............+++++|+|||||||.||+|.++|.++..........+     .+..++++++.+|+
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl  237 (547)
T PRK06087        163 TSSLSLSQIIADYEPLTTAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARL-----NLTWQDVFMMPAPL  237 (547)
T ss_pred             cCccCHHHHhccCCcccCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhc-----CCCCCCeEEEecch
Confidence            0122445544333111122345678999999999999999999999999988877766555     67889999999999


Q ss_pred             HHHHHHHH-HHHHHHcCcEEEEecC-CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHh
Q 010536          276 AHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKL  353 (508)
Q Consensus       276 ~~~~g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (508)
                      +|.+++.. .+.+++.|+++++.+. ++..+++.++++++|+++++|..+..+++.....                    
T Consensus       238 ~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~--------------------  297 (547)
T PRK06087        238 GHATGFLHGVTAPFLIGARSVLLDIFTPDACLALLEQQRCTCMLGATPFIYDLLNLLEKQ--------------------  297 (547)
T ss_pred             HHHHHHHHHHHHHHhcCCEEEecCCCCHHHHHHHHHHcCCCEEeccHHHHHHHHhccccC--------------------
Confidence            99999874 6678899999998874 9999999999999999999888877765422100                    


Q ss_pred             hhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCcceeeccCCC-C
Q 010536          354 GNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADV-F  432 (508)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~-~  432 (508)
                                       ..++        +++|.+++||+++++++.+.+.+. |+++++.||+||++.......... .
T Consensus       298 -----------------~~~~--------~~lr~i~~gG~~~~~~~~~~~~~~-~~~l~~~YG~TE~~~~~~~~~~~~~~  351 (547)
T PRK06087        298 -----------------PADL--------SALRFFLCGGTTIPKKVARECQQR-GIKLLSVYGSTESSPHAVVNLDDPLS  351 (547)
T ss_pred             -----------------CCCC--------CCeEEEEEcCCCCCHHHHHHHHHc-CCcEEEEecccccCCccccCCCcchh
Confidence                             0011        389999999999999999988875 999999999999987765443322 2


Q ss_pred             cccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccc-cCCccccCcEEEEcCCCC
Q 010536          433 NMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGDIGEWQPMEL  508 (508)
Q Consensus       433 ~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~-~~gw~~TGDlg~~d~dG~  508 (508)
                      ...+++|+|++++.++|+| +++..++.  |+.|||+++|+.++.||+++++.+...| .+|||+|||+|++|++|+
T Consensus       352 ~~~~~~G~~~~~~~~~i~d-~~~~~~~~--g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~  425 (547)
T PRK06087        352 RFMHTDGYAAAGVEIKVVD-EARKTLPP--GCEGEEASRGPNVFMGYLDEPELTARALDEEGWYYSGDLCRMDEAGY  425 (547)
T ss_pred             hcCCcCCccCCCceEEEEc-CCCCCCcC--CCcceEEEecccccccccCCHHHHHHHhCCCCCcCcCceEEECCCCC
Confidence            2236789999999999999 77776654  4899999999999999999999888877 579999999999999985

>PRK07008 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=4.3e-50  Score=417.91  Aligned_cols=402  Identities=20%  Similarity=0.296  Sum_probs=318.3

Q ss_pred             CCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHHH
Q 010536           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (508)
Q Consensus        42 ~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~lA  121 (508)
                      ..++.++|++.++.+|++.++.+.   .  .+.++.+||.||.++++++|++|.+.|+++||+|+++++|+++++++++|
T Consensus         9 ~~~~~~~l~~~~~~~~~~~~~~~~---~--~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~~d~v~i~~~~~~~~~~~~la   83 (539)
T PRK07008          9 PLLISSLIAHAARHAGDTEIVSRR---V--EGDIHRYTYRDCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYYG   83 (539)
T ss_pred             CCCHHHHHHHHHhhCCCceEEEee---c--cCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence            357899999999999999888654   2  12346799999999999999999999999999999999999999999999


Q ss_pred             HHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCceeeeH
Q 010536          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW  201 (508)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (508)
                      |+++|++++|++|..+.+++..+++.+++++++++......+.+... ....++.++.+.......     .......++
T Consensus        84 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----~~~~~~~~~  157 (539)
T PRK07008         84 VSGSGAVCHTINPRLFPEQIAYIVNHAEDRYVLFDLTFLPLVDALAP-QCPNVKGWVAMTDAAHLP-----AGSTPLLCY  157 (539)
T ss_pred             HHhcCcEEeecccccCHHHHHHHHhccCCcEEEEcchhHHHHHHHHh-hCCCceEEEEEccCCccc-----cCCcccccH
Confidence            99999999999999999999999999999999999877665544322 223444555443322110     011224567


Q ss_pred             HHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhh--hhhhhhhccccCCCCcEEEEecChHHHH
Q 010536          202 EEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLS--VDQMFVVTGKVCSEEDTYFSFLPLAHIY  279 (508)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~pl~~~~  279 (508)
                      +++..............++++++++|||||||.||+|.+||++++.....  ....+     .+..+|++++..|++|..
T Consensus       158 ~~l~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~h~~  232 (539)
T PRK07008        158 ETLVGAQDGDYDWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAM-----GLSARDAVLPVVPMFHVN  232 (539)
T ss_pred             HHHhcccCCCcCcccCCcccceEEEECCCCCCCCcEEEEecHHHHHHHHHhhccccc-----CCCCCceEEecCchHHhh
Confidence            77664432222233456788999999999999999999999998754322  22222     667889999999999988


Q ss_pred             HHHHHHHHHHcCcEEEEec--CCHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhh
Q 010536          280 DQIIETHCIHKGCSIGFWR--GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMK  357 (508)
Q Consensus       280 g~~~~~~~l~~G~~~~~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (508)
                      ++...+.++..|+++++.+  +++..+++.++++++|++.++|+++..+++.....                        
T Consensus       233 ~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~------------------------  288 (539)
T PRK07008        233 AWGLPYSAPLTGAKLVLPGPDLDGKSLYELIEAERVTFSAGVPTVWLGLLNHMREA------------------------  288 (539)
T ss_pred             hHHHHHHHHhcCceEEEecCCcCHHHHHHHHHHcCCEEEEechHHHHHHHhccccc------------------------
Confidence            8877788899999999875  38999999999999999999999999886532110                        


Q ss_pred             cCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCcceeeccCCC------
Q 010536          358 KGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADV------  431 (508)
Q Consensus       358 ~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~------  431 (508)
                                   ..++        +++|.++++|+++++++.+++.+.++..+++.||+||++..++......      
T Consensus       289 -------------~~~~--------~~l~~~~~~G~~l~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~  347 (539)
T PRK07008        289 -------------GLRF--------STLRRTVIGGSACPPAMIRTFEDEYGVEVIHAWGMTEMSPLGTLCKLKWKHSQLP  347 (539)
T ss_pred             -------------CCCc--------ccceEEEEcCCCCCHHHHHHHHHHhCCceecccccccccccceecccccccccCC
Confidence                         0111        3899999999999999999999989999999999999987655432110      


Q ss_pred             ----CcccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccccCCccccCcEEEEcCCC
Q 010536          432 ----FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQPME  507 (508)
Q Consensus       432 ----~~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDlg~~d~dG  507 (508)
                          .....++|+|+|+++++|+| +++..++.+.++.|||+++|+.++.||+++++   ..+.+|||+|||+|++|+||
T Consensus       348 ~~~~~~~~~~~G~p~pg~~~~i~d-~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~---~~~~~g~~~TGD~~~~~~dg  423 (539)
T PRK07008        348 LDEQRKLLEKQGRVIYGVDMKIVG-DDGRELPWDGKAFGDLQVRGPWVIDRYFRGDA---SPLVDGWFPTGDVATIDADG  423 (539)
T ss_pred             chhhhhhcccCCccccceEEEEEC-CCCCccCCCCCcceEEEEeCCccchhhcCChh---hhhcCCCcccCceEEEcCCC
Confidence                11136799999999999999 77877766545689999999999999999883   34568999999999999998


Q ss_pred             C
Q 010536          508 L  508 (508)
Q Consensus       508 ~  508 (508)
                      +
T Consensus       424 ~  424 (539)
T PRK07008        424 F  424 (539)
T ss_pred             c
Confidence            5

>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional

Probab=100.00  E-value=4e-50  Score=418.00  Aligned_cols=396  Identities=20%  Similarity=0.228  Sum_probs=319.0

Q ss_pred             CCCCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHH
Q 010536           38 SPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWII  117 (508)
Q Consensus        38 ~~~~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~  117 (508)
                      .|....++.++|+++++.+|+++|+++.   +      +.+||+||.+++.++|.+|.+.|+++|++|+++++|++++++
T Consensus        16 ~~~~~~~l~~~l~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~v~~la~~L~~~gi~~g~~V~v~~~n~~~~~~   86 (542)
T PRK06155         16 LPPSERTLPAMLARQAERYPDRPLLVFG---G------TRWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLD   86 (542)
T ss_pred             CCccccCHHHHHHHHHHHCCCCeEEEeC---C------ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHH
Confidence            4456788999999999999999999865   3      469999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCce
Q 010536          118 AMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS  197 (508)
Q Consensus       118 ~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (508)
                      +++||+++|++++|+++.++.+++..+++.+++++++++.+....+...... ...++.++.++.....      .....
T Consensus        87 ~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~------~~~~~  159 (542)
T PRK06155         87 VFLGCAWLGAIAVPINTALRGPQLEHILRNSGARLLVVEAALLAALEAADPG-DLPLPAVWLLDAPASV------SVPAG  159 (542)
T ss_pred             HHHHHHHhCCEEEEeccccCHHHHHHHHHhcCceEEEEChhhHHHHHHhccc-ccCcceEEEecCcccc------ccccc
Confidence            9999999999999999999999999999999999999998776665443321 1234455554432110      00000


Q ss_pred             eeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHH
Q 010536          198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAH  277 (508)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~  277 (508)
                      + ...++.. ...........++++++++|||||||.||+|.++|.++..........+     .+..++++++.+|++|
T Consensus       160 ~-~~~~~~~-~~~~~~~~~~~~~~~a~il~TSGTTG~PK~V~~t~~~~~~~~~~~~~~~-----~~~~~~~~l~~~pl~~  232 (542)
T PRK06155        160 W-STAPLPP-LDAPAPAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDL-----EIGADDVLYTTLPLFH  232 (542)
T ss_pred             c-chhhhcc-cCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEEHHHHHHHHHHHHHhc-----CCCCCCEEEEecCHHH
Confidence            0 0111111 1111122334678999999999999999999999999988877666555     6788999999999999


Q ss_pred             HHHHHHHHHHHHcCcEEEEecC-CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhh
Q 010536          278 IYDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNM  356 (508)
Q Consensus       278 ~~g~~~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (508)
                      .+++...+.+++.|+++++.+. ++..+++.++++++|+++++|+++..+++....                        
T Consensus       233 ~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~------------------------  288 (542)
T PRK06155        233 TNALNAFFQALLAGATYVLEPRFSASGFWPAVRRHGATVTYLLGAMVSILLSQPAR------------------------  288 (542)
T ss_pred             HHHHHHHHHHHHcCceEEeeCCCCHHHHHHHHHHhCCcEEEchHHHHHHHHcCcCc------------------------
Confidence            9999888899999999988874 899999999999999999999999887542110                        


Q ss_pred             hcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCcceeeccCCCCcccC
Q 010536          357 KKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIG  436 (508)
Q Consensus       357 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~  436 (508)
                                   .....        .+++.++.||  +++++.+.+++.++.++++.||+||++.++.....  ....+
T Consensus       289 -------------~~~~~--------~~l~~~~~g~--~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~--~~~~~  343 (542)
T PRK06155        289 -------------ESDRA--------HRVRVALGPG--VPAALHAAFRERFGVDLLDGYGSTETNFVIAVTHG--SQRPG  343 (542)
T ss_pred             -------------ccccc--------CceEEEEEcC--CCHHHHHHHHHHcCCCEEeeecccccCccccCCCC--CCCCC
Confidence                         00001        3788877666  57899999999999999999999999887654322  23447


Q ss_pred             ccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecC---cccccccCCcccccccccCCccccCcEEEEcCCCC
Q 010536          437 TVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGN---TLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQPMEL  508 (508)
Q Consensus       437 s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~---~v~~gY~~~~~~~~~~~~~gw~~TGDlg~~d~dG~  508 (508)
                      ++|.|+++++++|+| +++..++.+  +.|||+++|+   .++.||+++++.+.+.|.++||+|||+|++|+||+
T Consensus       344 ~vG~~~~~~~~~i~d-~~~~~~~~g--~~Gei~v~~~~~~~~~~GY~~~~~~~~~~~~~~~~~TGD~~~~~~dG~  415 (542)
T PRK06155        344 SMGRLAPGFEARVVD-EHDQELPDG--EPGELLLRADEPFAFATGYFGMPEKTVEAWRNLWFHTGDRVVRDADGW  415 (542)
T ss_pred             CcCccCCCceEEEEC-CCCCCCCCC--CceEEEEecCCccccchhhcCCHHHHHHhhcCCcEeccceEEEcCCce
Confidence            899999999999999 777766655  8999999998   69999999999998889999999999999999984

>PRK05852 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3e-50  Score=418.95  Aligned_cols=401  Identities=20%  Similarity=0.263  Sum_probs=309.5

Q ss_pred             CCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHH
Q 010536           40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM  119 (508)
Q Consensus        40 ~~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~  119 (508)
                      ....++.++|++.++++|+++|+++.   ++.    +.+||+||.++++++|++|.+.|+++||+|+++++|++++++++
T Consensus        13 ~~~~~l~~~l~~~a~~~p~~~ai~~~---~~~----~~~Ty~~l~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~   85 (534)
T PRK05852         13 DFGPRIADLVEVAATRLPEAPALVVT---ADR----IAISYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNAEFVVAL   85 (534)
T ss_pred             hhcccHHHHHHHHHHhCCCCcEEEec---CCC----CcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHHHH
Confidence            45678999999999999999999875   332    57999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCceee
Q 010536          120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCF  199 (508)
Q Consensus       120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (508)
                      +||+++|+++++++|.++.+++.++++.++++++|++............   ......+.+........      .....
T Consensus        86 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~------~~~~~  156 (534)
T PRK05852         86 LAASRADLVVVPLDPALPIAEQRVRSQAAGARVVLIDADGPHDRAEPTT---RWWPLTVNVGGDSGPSG------GTLSV  156 (534)
T ss_pred             HHHHHcCcEEeecCCCCCcHHHHHHHHhCCCCEEEEcCCCcchhccccc---cccceeeeecccccccc------ccccc
Confidence            9999999999999999999999999999999999998653321111000   01111111111100000      00000


Q ss_pred             eHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHH
Q 010536          200 SWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIY  279 (508)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~  279 (508)
                      .+..... ............++.++++|||||||.||+|.++|+++...+......+     .+..+|++++.+|++|.+
T Consensus       157 ~~~~~~~-~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~~~~~~~~~~~~~~~~~-----~~~~~d~~~~~~p~~~~~  230 (534)
T PRK05852        157 HLDAATE-PTPATSTPEGLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGY-----RLSPRDATVAVMPLYHGH  230 (534)
T ss_pred             ccccccC-CCccccccCCCCCCceEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHh-----CCCCcceEEEecCcchhH
Confidence            0100000 0000011112246789999999999999999999999999888877666     778899999999999999


Q ss_pred             HHHH-HHHHHHcCcEEEEec---CCHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhh
Q 010536          280 DQII-ETHCIHKGCSIGFWR---GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGN  355 (508)
Q Consensus       280 g~~~-~~~~l~~G~~~~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (508)
                      ++.. ++.+++.|++++++.   +++..+++.++++++|+++++|.++..+.+......                     
T Consensus       231 g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---------------------  289 (534)
T PRK05852        231 GLIAALLATLASGGAVLLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQILLERAATEP---------------------  289 (534)
T ss_pred             HHHHHHHHHHhcCCeEEeCCCcCcCHHHHHHHHHHcCCcEEEcChHHHHHHHhhccccc---------------------
Confidence            9885 677889999888754   378899999999999999999999999865321100                     


Q ss_pred             hhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCcceeeccCCC----
Q 010536          356 MKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADV----  431 (508)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~----  431 (508)
                                    ...++        +++|.++++|+++++++.+++.+.++..+++.||+||++..++......    
T Consensus       290 --------------~~~~~--------~~lr~i~~~G~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~  347 (534)
T PRK05852        290 --------------SGRKP--------AALRFIRSCSAPLTAETAQALQTEFAAPVVCAFGMTEATHQVTTTQIEGIGQT  347 (534)
T ss_pred             --------------ccccC--------CCeeEEEECCCCCCHHHHHHHHHHhCCChhhccCccccchhhhcCCccccccc
Confidence                          00001        3899999999999999999999999999999999999987665432211    


Q ss_pred             CcccCccccc--cCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccccCCccccCcEEEEcCCCC
Q 010536          432 FNMIGTVGVP--MTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQPMEL  508 (508)
Q Consensus       432 ~~~~~s~G~p--~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDlg~~d~dG~  508 (508)
                      .....++|.+  .+|++++|+| ++++.++.  |+.|||+|+|+.++.||+++++.+.+.|.+|||+|||+|++|+||+
T Consensus       348 ~~~~~~~g~~g~~~g~~~~i~d-~~g~~~~~--g~~Gel~v~g~~v~~gY~~~~~~t~~~~~~g~~~TGD~~~~d~dG~  423 (534)
T PRK05852        348 ENPVVSTGLVGRSTGAQIRIVG-SDGLPLPA--GAVGEVWLRGTTVVRGYLGDPTITAANFTDGWLRTGDLGSLSAAGD  423 (534)
T ss_pred             cCcccccccCCCCCCCeEEEEC-CCCCCCCC--CCceEEEEecCcccchhcCCcccchhhhcCCCcccCceEEEeCCCc
Confidence            1111234444  7999999999 88876654  4899999999999999999999999999999999999999999985

>PRK07786 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=4.7e-50  Score=418.08  Aligned_cols=395  Identities=24%  Similarity=0.283  Sum_probs=325.0

Q ss_pred             CCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHH
Q 010536           40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM  119 (508)
Q Consensus        40 ~~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~  119 (508)
                      ...+|+.+.+.++++.+|+++|+.+.   +      +.+||.||.++++++|.+|.+.|+++||+|+++++|++++++++
T Consensus        14 ~~~~n~~~~~~~~a~~~~~~~a~~~~---~------~~~ty~~l~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~   84 (542)
T PRK07786         14 ARRQNWVNQLARHALMQPDAPALRFL---G------NTTTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESV   84 (542)
T ss_pred             ccccCHHHHHHHHHHHCCCCeEEEeC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHH
Confidence            34588999999999999999999875   3      46999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCceee
Q 010536          120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCF  199 (508)
Q Consensus       120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (508)
                      +||+++|++++|+++..+.+++..+++.+++++++++......+... ....+..+.++...+...          ....
T Consensus        85 ~a~~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----------~~~~  153 (542)
T PRK07786         85 LAANMLGAIAVPVNFRLTPPEIAFLVSDCGAHVVVTEAALAPVATAV-RDIVPLLSTVVVAGGSSD----------DSVL  153 (542)
T ss_pred             HHHHHcCeEEEEcCccCCHHHHHHHHHhCCCcEEEEccchHHHHHHh-hhccCccceEEEecCCCc----------cccc
Confidence            99999999999999999999999999999999999988766544322 222234455555432211          1124


Q ss_pred             eHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccC-CCCcEEEEecChHHH
Q 010536          200 SWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVC-SEEDTYFSFLPLAHI  278 (508)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~pl~~~  278 (508)
                      .++++...............+++++++|||||||.||+|.++|+++...+......+     .. ..++++++.+|++|.
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~p~~~~  228 (542)
T PRK07786        154 GYEDLLAEAGPAHAPVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTN-----GADINSDVGFVGVPLFHI  228 (542)
T ss_pred             CHHHHhhccCCCCCCCCCCCCCeEEEEeCCCCCccchhhhhhHHHHHHHHHHHHHhc-----CCCCCCceEEEecchHHH
Confidence            566665443222233345567899999999999999999999999998887765554     33 567899999999999


Q ss_pred             HHHHHHHHHHHcCcEEEEec---CCHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhh
Q 010536          279 YDQIIETHCIHKGCSIGFWR---GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGN  355 (508)
Q Consensus       279 ~g~~~~~~~l~~G~~~~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (508)
                      +|+...+.++..|+++++.+   +++..+++.++++++|.++++|+++..++......                      
T Consensus       229 ~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~----------------------  286 (542)
T PRK07786        229 AGIGSMLPGLLLGAPTVIYPLGAFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQAR----------------------  286 (542)
T ss_pred             HHHHHHHHHHHccCEEEEccCCCcCHHHHHHHHHHcCCeEEEehHHHHHHHHhCcccC----------------------
Confidence            99988889999999999865   38999999999999999999999999986521100                      


Q ss_pred             hhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhc-CCceeeecccccCCcceeeccCCC-Cc
Q 010536          356 MKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESCSGCFTSLADV-FN  433 (508)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~~-~~  433 (508)
                                   ..  +         .++|.+++||+++++++.+++.+.+ +..+++.||+||++.+......+. ..
T Consensus       287 -------------~~--~---------~~lr~i~~gg~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~  342 (542)
T PRK07786        287 -------------PR--D---------LALRVLSWGAAPASDTLLRQMAATFPEAQILAAFGQTEMSPVTCMLLGEDAIR  342 (542)
T ss_pred             -------------cc--C---------cceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeecccccccceEecCcccccc
Confidence                         00  0         2689999999999999999999988 789999999999987655433322 23


Q ss_pred             ccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccccCCccccCcEEEEcCCCC
Q 010536          434 MIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQPMEL  508 (508)
Q Consensus       434 ~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDlg~~d~dG~  508 (508)
                      ..+++|+|++++.++|+| +++..++.  |+.|||+++|+.++.||+++++.+.+.|.+|||+|||+|++++||+
T Consensus       343 ~~~~~G~~~~~~~~~i~d-~~~~~~~~--g~~Gel~v~g~~~~~gy~~~~~~~~~~f~~~~~~TGDl~~~~~~g~  414 (542)
T PRK07786        343 KLGSVGKVIPTVAARVVD-ENMNDVPV--GEVGEIVYRAPTLMSGYWNNPEATAEAFAGGWFHSGDLVRQDEEGY  414 (542)
T ss_pred             cCCCccccCCCceEEEEC-CCCCCCcC--CCceEEEEEChhhhhhhcCCHHHHHHHhhCCcccccceEEEcCCce
Confidence            447899999999999999 77776654  4899999999999999999999999999999999999999999984

>PRK06060 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2e-50  Score=432.79  Aligned_cols=368  Identities=20%  Similarity=0.260  Sum_probs=298.5

Q ss_pred             CCHHHHHHHHHHh--CCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHH
Q 010536           43 ESPWQFFCDSAKR--IPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME  120 (508)
Q Consensus        43 ~ti~~~l~~~a~~--~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~l  120 (508)
                      .|+.++|.+++++  +||++|+++.          ..+||+||.++++++|++|.+.|+++||+|+++++|+++++++++
T Consensus         4 ~~~~~~~~~~a~~~~~pd~~a~~~~----------~~~Ty~eL~~~~~~lA~~L~~~g~~~g~~V~i~~~~~~~~~~~~l   73 (705)
T PRK06060          4 GNLAGLLAEQASEAGWYDRPAFYAA----------DVVTHGQIHDGAARLGEVLRNRGLSSGDRVLLCLPDSPDLVQLLL   73 (705)
T ss_pred             cCHHHHHHHHHhhccCCCceEEEec----------CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence            3788999998886  7999999743          259999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCceeee
Q 010536          121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFS  200 (508)
Q Consensus       121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (508)
                      ||+++|++++|++|.++.+++.++++.++++++|++......+...         .++                     .
T Consensus        74 a~~~aG~~~vpi~p~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~---------~~~---------------------~  123 (705)
T PRK06060         74 ACLARGVMAFLANPELHRDDHALAARNTEPALVVTSDALRDRFQPS---------RVA---------------------E  123 (705)
T ss_pred             HHHHhCcEEEecCCCCCHHHHHHHHhcCCCcEEEEchHHhhhhccc---------ccc---------------------h
Confidence            9999999999999999999999999999999999986543322110         000                     0


Q ss_pred             HHHHHhcC--CCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhh-hhhhhccccCCCCcEEEEecChHH
Q 010536          201 WEEFLQLG--TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVD-QMFVVTGKVCSEEDTYFSFLPLAH  277 (508)
Q Consensus       201 ~~~~~~~~--~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~pl~~  277 (508)
                      ..++....  ..+....+..++++++++|||||||.||||.++|+++...+..+. ..+     .+...+++++..|++|
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~~l~~~~~~~  198 (705)
T PRK06060        124 AAELMSEAARVAPGGYEPMGGDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRKAL-----RLTPEDTGLCSARMYF  198 (705)
T ss_pred             hhhhhhhccccCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEccccHHHHHHHHHHHhh-----CCCCcceeEEeccchh
Confidence            00111100  011112234568899999999999999999999999988776653 233     6678899999999999


Q ss_pred             HHHHH-HHHHHHHcCcEEEEecC--CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhh
Q 010536          278 IYDQI-IETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLG  354 (508)
Q Consensus       278 ~~g~~-~~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (508)
                      .+++. .++.++..|+++++.+.  ++..++..++++++|+++++|+++..+++....                      
T Consensus       199 ~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~----------------------  256 (705)
T PRK06060        199 AYGLGNSVWFPLATGGSAVINSAPVTPEAAAILSARFGPSVLYGVPNFFARVIDSCSP----------------------  256 (705)
T ss_pred             hcchhHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHhcCCeEEeeHHHHHHHHHHhccc----------------------
Confidence            88875 46788999999998863  788889999999999999999999988642100                      


Q ss_pred             hhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhc-CCceeeecccccCCcceeeccCCCCc
Q 010536          355 NMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESCSGCFTSLADVFN  433 (508)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~~~~  433 (508)
                                       .++        +++|.+++||+++++++.+++.+.+ +..+++.||+||++..+....... .
T Consensus       257 -----------------~~~--------~slr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~-~  310 (705)
T PRK06060        257 -----------------DSF--------RSLRCVVSAGEALELGLAERLMEFFGGIPILDGIGSTEVGQTFVSNRVDE-W  310 (705)
T ss_pred             -----------------ccc--------cceeEEEEecCcCCHHHHHHHHHHcCCCceEeeeeccccCceEEeccCCC-C
Confidence                             011        2899999999999999999999988 589999999999986654433322 2


Q ss_pred             ccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccccCCccccCcEEEEcCCCC
Q 010536          434 MIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQPMEL  508 (508)
Q Consensus       434 ~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDlg~~d~dG~  508 (508)
                      ..+++|+|+++++++|+| +++..++.  |+.|||+|+|++++.||+++++.+..  .+|||+|||+|++|+||+
T Consensus       311 ~~~~iG~p~~~~~v~i~d-~~g~~~~~--g~~GEl~i~g~~v~~GY~~~~~~~~~--~~~~~~TGDl~~~~~dG~  380 (705)
T PRK06060        311 RLGTLGRVLPPYEIRVVA-PDGTTAGP--GVEGDLWVRGPAIAKGYWNRPDSPVA--NEGWLDTRDRVCIDSDGW  380 (705)
T ss_pred             CcCcccccCCCcEEEEEC-CCCCCCCC--CCceEEEEccchhhhhhhCCCccccc--CCCcEECCeeEEECCCce
Confidence            347899999999999999 77776554  48999999999999999999886532  478999999999999985

>PRK07769 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.8e-50  Score=428.17  Aligned_cols=396  Identities=19%  Similarity=0.170  Sum_probs=303.4

Q ss_pred             CCCCCHHHHHHHHHHhCCCCCceeeeeccCC---CCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHH
Q 010536           40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDG---KVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWI  116 (508)
Q Consensus        40 ~~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~---~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~  116 (508)
                      ....++.++|+++++.+|+++|+++.   +.   .++.++.+||+||.++++++|++|.+. +++||+|+++++|+++++
T Consensus        18 ~~~~~l~~~l~~~a~~~~~~~a~~~~---~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~-~~~gd~V~i~~~n~~e~~   93 (631)
T PRK07769         18 PPNTNLVRHVERWAKVRGDKLAYRFL---DFSTERDGVARDLTWSQFGARNRAVGARLQQV-TKPGDRVAILAPQNLDYL   93 (631)
T ss_pred             cccCCHHHHHHHHHHhCCCCeEEEEe---ccCCCCCCceeEeeHHHHHHHHHHHHHHHHHh-cCCCCEEEEEcCCChHHH
Confidence            34578999999999999999999875   31   223457899999999999999999987 899999999999999999


Q ss_pred             HHHHHHHHcCCEEEec-cCCCC--HHHHHHHHHhcCceEEEEcCCChhhHhhcCccCC-CCccEEEEecCCCchhhhhhh
Q 010536          117 IAMEACNSQAITYVPL-YDTLG--ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCC-LYLKTIVSFANVSSSQKKEAE  192 (508)
Q Consensus       117 ~~~lA~~~~G~~~v~l-~~~~~--~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  192 (508)
                      ++++||+++|++++|+ ++..+  .+++.++++.++++++|+++.....+.+...... .....++.++....       
T Consensus        94 ~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  166 (631)
T PRK07769         94 IAFFGALYAGRIAVPLFDPAEPGHVGRLHAVLDDCTPSAILTTTDSAEGVRKFFRARPAKERPRVIAVDAVPD-------  166 (631)
T ss_pred             HHHHHHHHcCCEEEeeCCCCccchHHHHHHHHHhCCCCEEEEChHHHHHHHHHHhhccccccceEEEcccccc-------
Confidence            9999999999999999 55554  6889999999999999998876554433211100 01122322221100       


Q ss_pred             hcCceeeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEe
Q 010536          193 ELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSF  272 (508)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  272 (508)
                                 ..   ..........++++++|+|||||||.||||.++|+++...+......+     .+..++++++.
T Consensus       167 -----------~~---~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~  227 (631)
T PRK07769        167 -----------EV---GATWVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDAL-----EGQEGDRGVSW  227 (631)
T ss_pred             -----------cc---ccccCCCCCCCCCeEEEEeCCCCCCCCcEEEEcHHHHHHHHHHHHHHc-----CCCCcceEEEe
Confidence                       00   001111234568999999999999999999999999998887766655     67789999999


Q ss_pred             cChHHHHHHHHHHHHHHcCcEEEEec---C--CHHhHHHHhhhhcC---eEEEecchHHHHHHHHHHHHhhcCChhHHHH
Q 010536          273 LPLAHIYDQIIETHCIHKGCSIGFWR---G--DVRYLMEDIQELKP---TMFSGVPRVYDRIYTGISNKISSGGALSKKL  344 (508)
Q Consensus       273 ~pl~~~~g~~~~~~~l~~G~~~~~~~---~--~~~~~~~~i~~~~~---t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~  344 (508)
                      +|++|.+|+...+.+++.|++++++.   +  ++..+++.++++++   +++..+|.++..++....  .          
T Consensus       228 ~Pl~h~~gl~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~l~~~~~--~----------  295 (631)
T PRK07769        228 LPFFHDMGLITVLLPALLGHYITFMSPAAFVRRPGRWIRELARKPGGTGGTFSAAPNFAFEHAAARG--L----------  295 (631)
T ss_pred             CCCcCchhhHHHHHHHhhCCeEEEEChHHHHhCHHHHHHHHHhhccccCceEeeCCchHHHHHHhhc--c----------
Confidence            99999999987777888899988874   2  78899999999886   789999998877643100  0          


Q ss_pred             HHHHHHHHhhhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhc---CC---ceeeecccc
Q 010536          345 FEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS---GA---PLTQGYGLT  418 (508)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~---~~---~v~~~YG~T  418 (508)
                                          ........+++        ++|.+++||+++++++.++|.+.|   |.   .+++.||+|
T Consensus       296 --------------------~~~~~~~~~l~--------~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~i~~~YG~T  347 (631)
T PRK07769        296 --------------------PKDGEPPLDLS--------NVKGLLNGSEPVSPASMRKFNEAFAPYGLPPTAIKPSYGMA  347 (631)
T ss_pred             --------------------chhcccCcchh--------heeeEEeccCCCCHHHHHHHHHHHhhcCCChhhcccccchh
Confidence                                00000012333        899999999999999999999987   33   599999999


Q ss_pred             cCCcceeeccCCCC--------------------------cccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEec
Q 010536          419 ESCSGCFTSLADVF--------------------------NMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRG  472 (508)
Q Consensus       419 E~~~~~~~~~~~~~--------------------------~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g  472 (508)
                      |++..++.......                          ....++|+|+++.+++|+|.+++..++.  |+.|||+|+|
T Consensus       348 E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~G~~~~~~~~~ivd~~~g~~~~~--ge~GEl~v~g  425 (631)
T PRK07769        348 EATLFVSTTPMDEEPTVIYVDRDELNAGRFVEVPADAPNAVAQVSAGKVGVSEWAVIVDPETASELPD--GQIGEIWLHG  425 (631)
T ss_pred             hheeEEeccCCCCCceEEEEcHHHHhCCCeEecCCCCCCceeEEeCCCcCCCcEEEEEcCCCCcCCCC--CCEEEEEecC
Confidence            98776554332110                          0124799999999999999445555544  5899999999


Q ss_pred             CcccccccCCccccccccc------------------CCccccCcEEEEcCCCC
Q 010536          473 NTLFSGYYKRPDLTEEVIV------------------DGWFHTGDIGEWQPMEL  508 (508)
Q Consensus       473 ~~v~~gY~~~~~~~~~~~~------------------~gw~~TGDlg~~d~dG~  508 (508)
                      |+++.||+++++.+.+.|.                  +|||+|||+|+++ ||+
T Consensus       426 p~v~~GY~~~~~~t~~~f~~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~~-dG~  478 (631)
T PRK07769        426 NNIGTGYWGKPEETAATFQNILKSRLSESHAEGAPDDALWVRTGDYGVYF-DGE  478 (631)
T ss_pred             CCccccccCChhHHHHHHhhhcccccccccccCcccCCCeeeccccccEE-CCE
Confidence            9999999999999988884                  3899999999995 774

>PRK07470 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.9e-50  Score=418.74  Aligned_cols=394  Identities=21%  Similarity=0.272  Sum_probs=314.8

Q ss_pred             CCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHH
Q 010536           41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME  120 (508)
Q Consensus        41 ~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~l  120 (508)
                      ...|+.++|.+.++++|+++|+++.   +      +.+||+||.++++++|..|.+.|+++||+|+++++|+++++++++
T Consensus         5 ~~~~~~~~~~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~l   75 (528)
T PRK07470          5 RVMNLAHFLRQAARRFPDRIALVWG---D------RSWTWREIDARVDALAAALAARGVRKGDRILVHSRNCNQMFESMF   75 (528)
T ss_pred             cCCCHHHHHHHHHHHCCCceEEEEC---C------ccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHH
Confidence            4578999999999999999999865   3      479999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCceeee
Q 010536          121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFS  200 (508)
Q Consensus       121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (508)
                      ||+++|++++++++..+.+++.++++.++++.++++......+..... .......++.+.....            ...
T Consensus        76 A~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~------------~~~  142 (528)
T PRK07470         76 AAFRLGAVWVPTNFRQTPDEVAYLAEASGARAMICHADFPEHAAAVRA-ASPDLTHVVAIGGARA------------GLD  142 (528)
T ss_pred             HHHhCCeEEEecCccCCHHHHHHHHHhcCceEEEEcchhHHHHHHHHh-hCCcCceEEEeCCCcc------------ccc
Confidence            999999999999999999999999999999999999876544432211 1123334444432211            124


Q ss_pred             HHHHHhcC-CCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHH
Q 010536          201 WEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIY  279 (508)
Q Consensus       201 ~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~  279 (508)
                      ++++.... ...........+++++|+|||||||.||+|.++|+++...+......+   .......|+++..+|++|.+
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~  219 (528)
T PRK07470        143 YEALVARHLGARVANAAVDHDDPCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLADL---MPGTTEQDASLVVAPLSHGA  219 (528)
T ss_pred             HHHHHhcCCCCCCCcccCCCCCeEEEEeCCCCCCCCcEEEEehhhHHHHHHHHHHHh---ccCCCcccEEEEeccchhHH
Confidence            55554433 122223345678999999999999999999999999876555432222   11456789999999999999


Q ss_pred             HHHHHHHHHHcCcEEEEec---CCHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhh
Q 010536          280 DQIIETHCIHKGCSIGFWR---GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNM  356 (508)
Q Consensus       280 g~~~~~~~l~~G~~~~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (508)
                      ++...+ .++.|++.++.+   .+++.+++.++++++|++.++|++++.+++...                         
T Consensus       220 ~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-------------------------  273 (528)
T PRK07470        220 GIHQLC-QVARGAATVLLPSERFDPAEVWALVERHRVTNLFTVPTILKMLVEHPA-------------------------  273 (528)
T ss_pred             HHHHHH-HHhcCceEEEecccCcCHHHHHHHHHhcCCeEEechHHHHHHHHhCcC-------------------------
Confidence            987544 566777776654   389999999999999999999999998754210                         


Q ss_pred             hcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCcceeeccCC------
Q 010536          357 KKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLAD------  430 (508)
Q Consensus       357 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~------  430 (508)
                                  .+..++        +++|.+++||+++++++.+++.+.+|..+++.||+||+++.+......      
T Consensus       274 ------------~~~~~~--------~~lr~~~~gG~~l~~~~~~~~~~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~  333 (528)
T PRK07470        274 ------------VDRYDH--------SSLRYVIYAGAPMYRADQKRALAKLGKVLVQYFGLGEVTGNITVLPPALHDAED  333 (528)
T ss_pred             ------------cCCCCC--------cceEEEEEcCCCCCHHHHHHHHHHhCcHHHHhCCCcccCCceeecchhhccccc
Confidence                        111112        389999999999999999999888899999999999998776544321      


Q ss_pred             -CCcccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccccCCccccCcEEEEcCCCC
Q 010536          431 -VFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQPMEL  508 (508)
Q Consensus       431 -~~~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDlg~~d~dG~  508 (508)
                       .....+++|+|+++++++|+| +++..++.  |+.|||+++|+.++.||+++++.+.+.|.+|||+|||+|++|+||+
T Consensus       334 ~~~~~~~~~G~~~~g~~~~i~d-~~~~~~~~--g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~TGDl~~~~~~g~  409 (528)
T PRK07470        334 GPDARIGTCGFERTGMEVQIQD-DEGRELPP--GETGEICVIGPAVFAGYYNNPEANAKAFRDGWFRTGDLGHLDARGF  409 (528)
T ss_pred             cccceeeccCcccCCcEEEEEC-CCCCCCCC--CCceEEEEeCCccchhhcCCHHHHHhhhcCCcEecceeEEEccCCe
Confidence             122347899999999999999 77776654  4899999999999999999999998889999999999999999985

>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=5e-50  Score=419.55  Aligned_cols=408  Identities=22%  Similarity=0.343  Sum_probs=313.0

Q ss_pred             CCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhC-CCCCCCEEEEEcCCcHhHHHHHH
Q 010536           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSR-GVNPGDRCGIYGSNCPEWIIAME  120 (508)
Q Consensus        42 ~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~-gv~~gd~Vai~~~n~~~~~~~~l  120 (508)
                      ..++.++|.++++++|+++|+++.    +     +.+||.||.++++++|.+|.+. |+++||+|+++++|+++++++++
T Consensus        23 ~~~~~~~l~~~~~~~p~~~a~~~~----~-----~~~Ty~~l~~~~~~~a~~L~~~~gi~~gd~V~i~~~n~~e~~~~~l   93 (562)
T PRK12492         23 YKSVVEVFERSCKKFADRPAFSNL----G-----VTLSYAELERHSAAFAAYLQQHTDLVPGDRIAVQMPNVLQYPIAVF   93 (562)
T ss_pred             cCcHHHHHHHHHHhCCCCeeEecC----C-----ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHH
Confidence            468999999999999999999754    2     4799999999999999999985 99999999999999999999999


Q ss_pred             HHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCC--chhhh---------
Q 010536          121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVS--SSQKK---------  189 (508)
Q Consensus       121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---------  189 (508)
                      ||+++|+++++++|..+.+++.++++.++++++++++............  .....++......  .....         
T Consensus        94 a~~~~G~v~v~~~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (562)
T PRK12492         94 GALRAGLIVVNTNPLYTAREMRHQFKDSGARALVYLNMFGKLVQEVLPD--TGIEYLIEAKMGDLLPAAKGWLVNTVVDK  171 (562)
T ss_pred             HHHHcCeEEeccCccCCHHHHHHHHhccCceEEEeccccchHHHHhhhc--cCceEEEeechhhccccccchhccccccc
Confidence            9999999999999999999999999999999999987654433322211  0111111110000  00000         


Q ss_pred             ----hhhhcCceeeeHHHHHhcC-CCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccc---
Q 010536          190 ----EAEELGVSCFSWEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGK---  261 (508)
Q Consensus       190 ----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~---  261 (508)
                          ...........|+++.... .....+.+...+++++|+|||||||.||+|.++|+++..++......+.....   
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~  251 (562)
T PRK12492        172 VKKMVPAYHLPQAVPFKQALRQGRGLSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDGQ  251 (562)
T ss_pred             ccccccccCCcccccHHHHHhccCCCCCCCCCCCcCCeEEEEeCCCCCCCCceEEEechhHHHHHHHHHHHHhccccccc
Confidence                0000001123455555433 11222334567899999999999999999999999998887766554421100   


Q ss_pred             -cCCC-CcEEEEecChHHHHHHHH-HHHHHHcCcEEEEec--CCHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhc
Q 010536          262 -VCSE-EDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWR--GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISS  336 (508)
Q Consensus       262 -~~~~-~~~~l~~~pl~~~~g~~~-~~~~l~~G~~~~~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~  336 (508)
                       .... ++++++.+|++|.+++.. .+..+..|..+++..  .++..+++.++++++|++.++|.++..+++..      
T Consensus       252 ~~~~~~~~~~~~~~pl~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~------  325 (562)
T PRK12492        252 PLMKEGQEVMIAPLPLYHIYAFTANCMCMMVSGNHNVLITNPRDIPGFIKELGKWRFSALLGLNTLFVALMDHP------  325 (562)
T ss_pred             ccccCCCeEEEEecchHHHHHHHHHHHHHhhcCceEEEecCCcCHHHHHHHHHHhCCceeeCcHHHHHHHHhCc------
Confidence             0222 457889999999999875 556677888776654  38899999999999999999999999876421      


Q ss_pred             CChhHHHHHHHHHHHHhhhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecc
Q 010536          337 GGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYG  416 (508)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG  416 (508)
                                                     .....++        .++|.+++||+++++++.+.|++.+++++++.||
T Consensus       326 -------------------------------~~~~~~~--------~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG  366 (562)
T PRK12492        326 -------------------------------GFKDLDF--------SALKLTNSGGTALVKATAERWEQLTGCTIVEGYG  366 (562)
T ss_pred             -------------------------------Ccccccc--------cceeEEEeccccCCHHHHHHHHHHhCCceeeccC
Confidence                                           0111122        2899999999999999999999988999999999


Q ss_pred             cccCCcceeeccCCCCcccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccc-cCCcc
Q 010536          417 LTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWF  495 (508)
Q Consensus       417 ~TE~~~~~~~~~~~~~~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~-~~gw~  495 (508)
                      +||++.+++..........+++|+|+++++++|+| +++..++.  |+.|||+|+|+.++.||+++++.+.+.| .+|||
T Consensus       367 ~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~v~ivd-~~~~~~~~--g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~~  443 (562)
T PRK12492        367 LTETSPVASTNPYGELARLGTVGIPVPGTALKVID-DDGNELPL--GERGELCIKGPQVMKGYWQQPEATAEALDAEGWF  443 (562)
T ss_pred             ccccCceeeecCCcccccCCccceecCCCEEEEEC-CCCCCCCC--CCceEEEEeCCccccccccCchhhhhcccCCCce
Confidence            99998877655544444457899999999999999 77766654  4899999999999999999999998888 57999


Q ss_pred             ccCcEEEEcCCCC
Q 010536          496 HTGDIGEWQPMEL  508 (508)
Q Consensus       496 ~TGDlg~~d~dG~  508 (508)
                      +|||+|++|++|+
T Consensus       444 ~TGD~g~~~~~G~  456 (562)
T PRK12492        444 KTGDIAVIDPDGF  456 (562)
T ss_pred             ecCcEEEECCCCe
Confidence            9999999999984

>PRK03584 acetoacetyl-CoA synthetase; Provisional

Probab=100.00  E-value=5.9e-50  Score=425.85  Aligned_cols=406  Identities=19%  Similarity=0.203  Sum_probs=307.7

Q ss_pred             CCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHH
Q 010536           40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM  119 (508)
Q Consensus        40 ~~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~  119 (508)
                      .+..|+.+.+..+  .+|+++|+++.   +. ++..+.+||+||.++++++|++|+++|+++||+|+++++|++++++++
T Consensus        83 ~~~~n~~~~~~~~--~~~~~~Al~~~---~~-~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~v~~~  156 (655)
T PRK03584         83 GARLNYAENLLRH--RRDDRPAIIFR---GE-DGPRRELSWAELRRQVAALAAALRALGVGPGDRVAAYLPNIPETVVAM  156 (655)
T ss_pred             CCEeeHHHHhhcc--CCCCCeEEEEE---CC-CCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence            3445666655542  58999999986   43 445678999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCCh---------hhHhhcCccCCCCccEEEEecCCCchhhhh
Q 010536          120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI---------PSILSCLPRCCLYLKTIVSFANVSSSQKKE  190 (508)
Q Consensus       120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (508)
                      |||+++|++++|++|.++.+++.++++.++++++|+++...         ..+.+.. .....++.++.+.......   
T Consensus       157 lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~---  232 (655)
T PRK03584        157 LATASLGAIWSSCSPDFGVQGVLDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAELR-AALPSLEHVVVVPYLGPAA---  232 (655)
T ss_pred             HHHHHcCcEEEeeCCCCCHHHHHHHHHHcCCcEEEEccccccCCcccchHHHHHHHH-hcCCCccEEEEEecCCCcc---
Confidence            99999999999999999999999999999999999987532         1121211 1223444555554321100   


Q ss_pred             hhhcCceeeeHHHHHhcC-CCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHH-HhhhhhhhhhccccCCCCcE
Q 010536          191 AEELGVSCFSWEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAE-VLSVDQMFVVTGKVCSEEDT  268 (508)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~-~~~~~~~~~~~~~~~~~~~~  268 (508)
                      ..........|+++.... ...........+++++|+|||||||.||||+++|++++.+ .......+     .+..+|+
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~  307 (655)
T PRK03584        233 AAAALPGALLWEDFLAPAEAAELEFEPVPFDHPLWILYSSGTTGLPKCIVHGHGGILLEHLKELGLHC-----DLGPGDR  307 (655)
T ss_pred             cccccCCcccHHHHhhccccCCCCceecCCCCcEEEEecCCCCCCCceEEECccHHHHHHHHHHHHhc-----CCCCCCE
Confidence            000111234566665422 2222334456789999999999999999999999987644 44444444     6788999


Q ss_pred             EEEecChHHHHHHHHHHHHHHcCcEEEEecC-----CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHH
Q 010536          269 YFSFLPLAHIYDQIIETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKK  343 (508)
Q Consensus       269 ~l~~~pl~~~~g~~~~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~  343 (508)
                      +++..++.|.... ..+.+++.|+++++.++     ++..+++.++++++|++..+|++++.+.+.-             
T Consensus       308 ~~~~~~~~~~~~~-~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~-------------  373 (655)
T PRK03584        308 FFWYTTCGWMMWN-WLVSGLLVGATLVLYDGSPFYPDPNVLWDLAAEEGVTVFGTSAKYLDACEKAG-------------  373 (655)
T ss_pred             EEEcCCchHHhHH-HHHHHHHcCCEEEEeCCCCCCCCHHHHHHHHHHHCCEEEEcCHHHHHHHHhcC-------------
Confidence            9999999987543 45688999999999752     7899999999999999999999998875310             


Q ss_pred             HHHHHHHHHhhhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhc--CCceeeecccccCC
Q 010536          344 LFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS--GAPLTQGYGLTESC  421 (508)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~--~~~v~~~YG~TE~~  421 (508)
                                           ..+ ....+++        +||.+++||+++++++.+++.+.+  ++.+.+.||+||++
T Consensus       374 ---------------------~~~-~~~~~l~--------sLr~i~~~Ge~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~  423 (655)
T PRK03584        374 ---------------------LVP-GETHDLS--------ALRTIGSTGSPLPPEGFDWVYEHVKADVWLASISGGTDIC  423 (655)
T ss_pred             ---------------------CCc-cccCChh--------heEEEEEecCCCCHHHHHHHHHHhCCCceEEeccChHhhh
Confidence                                 000 1112233        899999999999999999999987  47899999999987


Q ss_pred             cceeeccCCCCcccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecC--cccccccCCccccc--cc-c--cCCc
Q 010536          422 SGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGN--TLFSGYYKRPDLTE--EV-I--VDGW  494 (508)
Q Consensus       422 ~~~~~~~~~~~~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~--~v~~gY~~~~~~~~--~~-~--~~gw  494 (508)
                      +.+...........+++|.|++|++++|+| ++|..+   .|+.|||+|+||  +++.||+++++.+.  +. |  .+||
T Consensus       424 ~~~~~~~~~~~~~~g~~g~p~~g~~~~ivd-~~g~~~---~g~~GeL~v~gp~p~~~~gy~~~~~~~~~~~~~~~~~~g~  499 (655)
T PRK03584        424 SCFVGGNPLLPVYRGEIQCRGLGMAVEAWD-EDGRPV---VGEVGELVCTKPFPSMPLGFWNDPDGSRYRDAYFDTFPGV  499 (655)
T ss_pred             cccccCCCCCCcCCCccCCCcCCceeEEEC-CCCCCC---CCCceEEEEccCCCCCcceeeCCCccchHHHhhhccCCCE
Confidence            654433322233458999999999999999 777755   458999999996  78999999987543  11 2  2678


Q ss_pred             cccCcEEEEcCCCC
Q 010536          495 FHTGDIGEWQPMEL  508 (508)
Q Consensus       495 ~~TGDlg~~d~dG~  508 (508)
                      |+|||+|++|+||+
T Consensus       500 ~~TGDl~~~d~dG~  513 (655)
T PRK03584        500 WRHGDWIEITEHGG  513 (655)
T ss_pred             eecCCeEEECCCCe
Confidence            99999999999985

>PLN03102 acyl-activating enzyme; Provisional

Probab=100.00  E-value=8.7e-50  Score=418.28  Aligned_cols=400  Identities=21%  Similarity=0.285  Sum_probs=300.9

Q ss_pred             CCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHHH
Q 010536           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (508)
Q Consensus        42 ~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~lA  121 (508)
                      ..|+.++|.+.++++|+++|+.+.   +      ..+||+||.++++++|++|.++|+++||+|+|+++|++++++++||
T Consensus        13 ~~~~~~~l~~~~~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~~a~~L~~~Gl~~gd~Vai~~~n~~e~~~~~la   83 (579)
T PLN03102         13 PLTPITFLKRASECYPNRTSIIYG---K------TRFTWPQTYDRCCRLAASLISLNITKNDVVSVLAPNTPAMYEMHFA   83 (579)
T ss_pred             cccHHHHHHHHHHhCCCCeEEEEC---C------cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence            357899999999999999999865   3      4799999999999999999999999999999999999999999999


Q ss_pred             HHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCC----CCccEEEEecCCCchhhhhhhhcCce
Q 010536          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCC----LYLKTIVSFANVSSSQKKEAEELGVS  197 (508)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (508)
                      |+++|++++||+|.++.+++.++++.++++++|++++....+.+......    .....++.++.......     ....
T Consensus        84 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~  158 (579)
T PLN03102         84 VPMAGAVLNPINTRLDATSIAAILRHAKPKILFVDRSFEPLAREVLHLLSSEDSNLNLPVIFIHEIDFPKR-----PSSE  158 (579)
T ss_pred             HHhcCcEEeeccccCCHHHHHHHHhccCCeEEEEChhhHHHHHHHHhhccccccccCceEEEecccccccC-----Cccc
Confidence            99999999999999999999999999999999998876655543322110    01112333332111000     0011


Q ss_pred             eeeHHHHHhcCCCC-CC----CCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEe
Q 010536          198 CFSWEEFLQLGTLD-CE----LPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSF  272 (508)
Q Consensus       198 ~~~~~~~~~~~~~~-~~----~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  272 (508)
                      ..+++++.+..... ..    ......+++++|+|||||||.||+|.++|.++...........     .....++++..
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~~~~l~~  233 (579)
T PLN03102        159 ELDYECLIQRGEPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGW-----EMGTCPVYLWT  233 (579)
T ss_pred             ccCHHHHHhccCCCCcccccccccCCCCCcEEEEeCCcCCCCCCEEEEecHHHHHHHHHHHhhc-----CCCCCCeEEec
Confidence            23455555433111 10    1123568999999999999999999999999755443322222     45567789999


Q ss_pred             cChHHHHHHHHHHHHHHcCcEEEEec-CCHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHH
Q 010536          273 LPLAHIYDQIIETHCIHKGCSIGFWR-GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNY  351 (508)
Q Consensus       273 ~pl~~~~g~~~~~~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  351 (508)
                      +|++|..++...+.++..|+++++.+ +++..+++.|+++++|++.++|+++..|++......                 
T Consensus       234 ~pl~h~~g~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-----------------  296 (579)
T PLN03102        234 LPMFHCNGWTFTWGTAARGGTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNSLDL-----------------  296 (579)
T ss_pred             CChhhhcchhHHHHHHHhcCcEEeeccCChHHHHHHHHHcCCeEEEeChHHHHHHHhCccccc-----------------
Confidence            99999999887777888888888776 488899999999999999999999999865211000                 


Q ss_pred             HhhhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCcceeeccCCC
Q 010536          352 KLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADV  431 (508)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~  431 (508)
                                          ..+        .+++.+++||+++++.+.+++++ +|..+++.||+||+++.++......
T Consensus       297 --------------------~~~--------~~~~~~~~gg~~~~~~~~~~~~~-~g~~i~~~YG~tE~~~~~~~~~~~~  347 (579)
T PLN03102        297 --------------------SPR--------SGPVHVLTGGSPPPAALVKKVQR-LGFQVMHAYGLTEATGPVLFCEWQD  347 (579)
T ss_pred             --------------------CCc--------ccceEEEECCCCCCHHHHHHHHH-cCCeEEeecCccccCcccccccccc
Confidence                                000        25688999999999999999876 5999999999999986544321100


Q ss_pred             -------------CcccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccccCCccccC
Q 010536          432 -------------FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTG  498 (508)
Q Consensus       432 -------------~~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~~~gw~~TG  498 (508)
                                   ....+..+.+++++  .+.+.+.+..++.+.++.|||+|+|+.++.||+++++.+.+.|.+|||+||
T Consensus       348 ~~~~~~~~~~~~~~~~~g~~~~~~~~v--~i~~~~~~~~v~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~gw~~TG  425 (579)
T PLN03102        348 EWNRLPENQQMELKARQGVSILGLADV--DVKNKETQESVPRDGKTMGEIVIKGSSIMKGYLKNPKATSEAFKHGWLNTG  425 (579)
T ss_pred             ccccCCcccccccccCCCcccccccce--EEeccccccccCCCCCCceEEEEECcchhhhhcCChhhhHhhhccCceecC
Confidence                         01123444455544  455523344454433468999999999999999999999999999999999


Q ss_pred             cEEEEcCCCC
Q 010536          499 DIGEWQPMEL  508 (508)
Q Consensus       499 Dlg~~d~dG~  508 (508)
                      |+|++|+||+
T Consensus       426 Dlg~~d~dG~  435 (579)
T PLN03102        426 DVGVIHPDGH  435 (579)
T ss_pred             ceEEEcCCCe
Confidence            9999999985

>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

Probab=100.00  E-value=3.6e-50  Score=430.98  Aligned_cols=386  Identities=19%  Similarity=0.286  Sum_probs=299.0

Q ss_pred             CCCCHHHHHHHHHHhCCC-CCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHH
Q 010536           41 GLESPWQFFCDSAKRIPN-NQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM  119 (508)
Q Consensus        41 ~~~ti~~~l~~~a~~~p~-~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~  119 (508)
                      ...++.++|.+.++++|+ ++|+.+.   +     ++.+||+||.++++++|++|.+. +++||+|+++++|++++++++
T Consensus       202 ~~~t~~~~l~~~~~~~p~~~~a~~~~---~-----~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~Val~~~n~~e~~~~~  272 (718)
T PRK08043        202 PRETLYEALLSAQYRYGAGKPCIEDV---N-----FTPDSYRKLLKKTLFVGRILEKY-SVEGERIGLMLPNATISAAVI  272 (718)
T ss_pred             CCCCHHHHHHHHHHHhCCCCcceEcC---C-----CCcccHHHHHHHHHHHHHHHHHh-cCCCceEEEEcCCcHHHHHHH
Confidence            457899999999999998 5777532   1     15699999999999999999987 599999999999999999999


Q ss_pred             HHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhh-cCccCCCCccEEEEecCCCchhhhhhhhcCcee
Q 010536          120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILS-CLPRCCLYLKTIVSFANVSSSQKKEAEELGVSC  198 (508)
Q Consensus       120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (508)
                      +||+++|++++|+++.++.+++.+++++++++++|++.+....... ........... +.+++....            
T Consensus       273 lA~~~~G~v~vpl~~~~~~~~l~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~------------  339 (718)
T PRK08043        273 FGASLRRRIPAMMNYTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWHLPEQLTQVRW-VYLEDLKDD------------  339 (718)
T ss_pred             HHHHHcCCcccccccCcCHHHHHHHHHHcCCcEEEEcHHHHhhccCCChhhhhccccE-EEhhhhhhh------------
Confidence            9999999999999999999999999999999999998765432100 01111111122 222211000            


Q ss_pred             eeHHHH----HhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecC
Q 010536          199 FSWEEF----LQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLP  274 (508)
Q Consensus       199 ~~~~~~----~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p  274 (508)
                      ..+.+.    ..............++++++++|||||||.||||.+||.++...+......+     .+..+|++++.+|
T Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~P  414 (718)
T PRK08043        340 VTTADKLWIFAHLLMPRLAQVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIA-----DFTPNDRFMSALP  414 (718)
T ss_pred             cchhHHHHHHHHHhCCccccCCCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhh-----CCCccCeEEEcCc
Confidence            001000    0000001111234678999999999999999999999999998887766655     6788999999999


Q ss_pred             hHHHHHHHH-HHHHHHcCcEEEEecC--CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHH
Q 010536          275 LAHIYDQII-ETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNY  351 (508)
Q Consensus       275 l~~~~g~~~-~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  351 (508)
                      ++|.+++.. .+.++..|+++++.+.  +...+++.++++++|+++++|+++..+.+.                      
T Consensus       415 l~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~----------------------  472 (718)
T PRK08043        415 LFHSFGLTVGLFTPLLTGAEVFLYPSPLHYRIVPELVYDRNCTVLFGTSTFLGNYARF----------------------  472 (718)
T ss_pred             chhhhhhHHHHHHHHHcCCEEEEeCCcccHHHHHHHHHhcCCeEEEchHHHHHHhhhh----------------------
Confidence            999999875 6789999999998863  677889999999999999999998776431                      


Q ss_pred             HhhhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCcceeeccCCC
Q 010536          352 KLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADV  431 (508)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~  431 (508)
                                       .+..++        ++||.+++||+++++++.+.+++.+|+.+++.||+||++..++......
T Consensus       473 -----------------~~~~~~--------~~lr~i~~gg~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~  527 (718)
T PRK08043        473 -----------------ANPYDF--------ARLRYVVAGAEKLQESTKQLWQDKFGLRILEGYGVTECAPVVSINVPMA  527 (718)
T ss_pred             -----------------cCcccc--------cceEEEEEeCccCCHHHHHHHHHHcCCCeecccCcccccceEEecCCcc
Confidence                             001122        2899999999999999999999999999999999999987766544322


Q ss_pred             CcccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccC--Cccc-------cccc-ccCCccccCcEE
Q 010536          432 FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYK--RPDL-------TEEV-IVDGWFHTGDIG  501 (508)
Q Consensus       432 ~~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~--~~~~-------~~~~-~~~gw~~TGDlg  501 (508)
                       ...+++|+|+||++++|+| +++.      ++.|||+++|++++.||++  +++.       +.+. +.+|||+|||+|
T Consensus       528 -~~~~svG~p~pg~~~~i~d-~~~~------~~~Gel~v~g~~v~~GY~~~e~~~~~~~~~~~~~~~~~~~gw~~TGDlg  599 (718)
T PRK08043        528 -AKPGTVGRILPGMDARLLS-VPGI------EQGGRLQLKGPNIMNGYLRVEKPGVLEVPTAENARGEMERGWYDTGDIV  599 (718)
T ss_pred             -cCCCCCCCcCCCCeeEEec-CCCC------CCceEEEEecCCccccccCCCCcccccccccccccccccCCeEecCCEE
Confidence             3458999999999999998 5442      2569999999999999998  3442       2222 257999999999


Q ss_pred             EEcCCCC
Q 010536          502 EWQPMEL  508 (508)
Q Consensus       502 ~~d~dG~  508 (508)
                      ++|+||+
T Consensus       600 ~~d~dG~  606 (718)
T PRK08043        600 RFDEQGF  606 (718)
T ss_pred             EEcCCCc
Confidence            9999996

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=100.00  E-value=3.9e-50  Score=454.70  Aligned_cols=403  Identities=21%  Similarity=0.298  Sum_probs=320.5

Q ss_pred             CCCCCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHH
Q 010536           37 ESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWI  116 (508)
Q Consensus        37 ~~~~~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~  116 (508)
                      ..+...+++.+.+++.++++|+++|+++.   ++     +.+||+||.++++++|++|.+ ++++||+|+++++|+++++
T Consensus       609 ~~~~~~~~l~~~~~~~a~~~p~~~a~~~~---~~-----~~~Ty~el~~~~~~~a~~L~~-~~~~g~~V~i~~~n~~~~~  679 (1146)
T PRK08633        609 SRKEALPPLAEAWIDTAKRNWSRLAVADS---TG-----GELSYGKALTGALALARLLKR-ELKDEENVGILLPPSVAGA  679 (1146)
T ss_pred             hhcCCCCCHHHHHHHHHHhcCCCcEEEcC---CC-----CcCcHHHHHHHHHHHHHHHHH-hCCCCCeEEEECCCchHHH
Confidence            34467789999999999999999999864   33     479999999999999999987 4899999999999999999


Q ss_pred             HHHHHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCcc-CCCCccEEEEecCCCchhhhhhhhcC
Q 010536          117 IAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPR-CCLYLKTIVSFANVSSSQKKEAEELG  195 (508)
Q Consensus       117 ~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (508)
                      ++++||+++|++++|++|..+.+++.+++++++++++++++...+.+.+.... .......++..++......       
T Consensus       680 ~~~la~~~~G~v~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  752 (1146)
T PRK08633        680 LANLALLLAGKVPVNLNYTASEAALKSAIEQAQIKTVITSRKFLEKLKNKGFDLELPENVKVIYLEDLKAKIS-------  752 (1146)
T ss_pred             HHHHHHHHcCCEEEEeCCCcCHHHHHHHHHHcCCCEEEEcHHHHHHHhccCCchhcccCceEEEeehhccccc-------
Confidence            99999999999999999999999999999999999999987665554321100 1122233444332111000       


Q ss_pred             ceeeeHHHHHhcCCCC------CCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEE
Q 010536          196 VSCFSWEEFLQLGTLD------CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTY  269 (508)
Q Consensus       196 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (508)
                       ....+++.......+      .......++++++++|||||||.||+|.++|+++...+......+     ....+|++
T Consensus       753 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~d~~  826 (1146)
T PRK08633        753 -KVDKLTALLAARLLPARLLKRLYGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVF-----NLRNDDVI  826 (1146)
T ss_pred             -hhHHHHHHHHhccCCHHHHHhhccCCCCCCCEEEEEECCCCCCCCceEEechHHHHHHHHHHHHhc-----CCCCCCEE
Confidence             001122211111000      001345678999999999999999999999999999888876665     67789999


Q ss_pred             EEecChHHHHHHHH-HHHHHHcCcEEEEecC--CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHH
Q 010536          270 FSFLPLAHIYDQII-ETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFE  346 (508)
Q Consensus       270 l~~~pl~~~~g~~~-~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~  346 (508)
                      ++.+|++|.+++.. .+.+++.|+++++.+.  +++.+++.++++++|++.++|++++.+++..                
T Consensus       827 l~~~p~~h~~g~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~----------------  890 (1146)
T PRK08633        827 LSSLPFFHSFGLTVTLWLPLLEGIKVVYHPDPTDALGIAKLVAKHRATILLGTPTFLRLYLRNK----------------  890 (1146)
T ss_pred             EEcCcHHHHHhHHHHHHHHHHCCCEEEEeCCCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhcc----------------
Confidence            99999999999985 7788999999988763  8999999999999999999999999876411                


Q ss_pred             HHHHHHhhhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCcceee
Q 010536          347 FAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFT  426 (508)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~  426 (508)
                                           ..+..++        +++|.+++||+++++++.+++++.+|.++++.||+||++++++.
T Consensus       891 ---------------------~~~~~~~--------~~lr~~~~gg~~~~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~  941 (1146)
T PRK08633        891 ---------------------KLHPLMF--------ASLRLVVAGAEKLKPEVADAFEEKFGIRILEGYGATETSPVASV  941 (1146)
T ss_pred             ---------------------ccCcccC--------CCeeeEEEcCCcCCHHHHHHHHHHhCCCeecccccccCcceEEE
Confidence                                 1111222        38999999999999999999999999999999999999877765


Q ss_pred             ccCCC---------CcccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccccC----C
Q 010536          427 SLADV---------FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVD----G  493 (508)
Q Consensus       427 ~~~~~---------~~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~~~----g  493 (508)
                      ...+.         ..+.+++|+|+||++++|+|.++++.++  .|+.|||+++|++++.||+++++.+.+.|.+    |
T Consensus       942 ~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~--~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~~ 1019 (1146)
T PRK08633        942 NLPDVLAADFKRQTGSKEGSVGMPLPGVAVRIVDPETFEELP--PGEDGLILIGGPQVMKGYLGDPEKTAEVIKDIDGIG 1019 (1146)
T ss_pred             ecCcccccccccccCCCCCCccccCCCCEEEEEcCCCCccCC--CCCceEEEEcCCCccccccCCccchHHHhhcCCCCC
Confidence            43221         1235789999999999999944455454  4599999999999999999999999988876    9


Q ss_pred             ccccCcEEEEcCCCC
Q 010536          494 WFHTGDIGEWQPMEL  508 (508)
Q Consensus       494 w~~TGDlg~~d~dG~  508 (508)
                      ||+|||+|++|+||+
T Consensus      1020 ~~~TGD~~~~~~~g~ 1034 (1146)
T PRK08633       1020 WYVTGDKGHLDEDGF 1034 (1146)
T ss_pred             eEECCCEEEEcCCce
Confidence            999999999999985

>PRK06145 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.6e-49  Score=410.38  Aligned_cols=384  Identities=22%  Similarity=0.306  Sum_probs=310.8

Q ss_pred             CCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHHH
Q 010536           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (508)
Q Consensus        42 ~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~lA  121 (508)
                      |.++.++|.++++.+|+++|+++.   +      +.+||.||.+++.++|.+|.+.|+++|++|+++++|+++++++++|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~a~~~~---~------~~~ty~el~~~v~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la   71 (497)
T PRK06145          1 MFNLSASIAFHARRTPDRAALVYR---D------QEISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFA   71 (497)
T ss_pred             CccHHHHHHHHHHHCCCceEEEEC---C------cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence            468899999999999999999865   3      4799999999999999999999999999999999999999999999


Q ss_pred             HHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCceeeeH
Q 010536          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW  201 (508)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (508)
                      |+++|++++|+++..+.+++.++++.+++++++++.+...... .       ....+.++.....             .+
T Consensus        72 ~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~-~-------~~~~~~~~~~~~~-------------~~  130 (497)
T PRK06145         72 ASYLGAVFLPINYRLAADEVAYILGDAGAKLLLVDEEFDAIVA-L-------ETPKIVIDAAAQA-------------DS  130 (497)
T ss_pred             HHhcCcEEEecccccCHHHHHHHHHhcCCcEEEEccchhhhhh-c-------ccceEEecCcccc-------------hh
Confidence            9999999999999999999999999999999999876543221 0       0112222211100             01


Q ss_pred             HHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHH
Q 010536          202 EEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ  281 (508)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~  281 (508)
                      ..+..............++++++++|||||||.||+|.++|.++...+......+     ....+++++..+|++|.+++
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~~~  205 (497)
T PRK06145        131 RRLAQGGLEIPPQAAVAPTDLVRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVIAL-----GLTASERLLVVGPLYHVGAF  205 (497)
T ss_pred             HHHhccCCCCCCCCCCCccceEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhh-----CCCCCcEEEEecCchhHhHH
Confidence            1111111111112234678999999999999999999999999987665544444     67888999999999999998


Q ss_pred             HH-HHHHHHcCcEEEEecC-CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhcC
Q 010536          282 II-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKG  359 (508)
Q Consensus       282 ~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (508)
                      .. .+.+++.|+++++.+. ++..+++.++++++|++.++|++++.++....                            
T Consensus       206 ~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~ll~~~~----------------------------  257 (497)
T PRK06145        206 DLPGIAVLWVGGTLRIHREFDPEAVLAAIERHRLTCAWMAPVMLSRVLTVPD----------------------------  257 (497)
T ss_pred             HHHHHHHHhccCEEEECCcCCHHHHHHHHHHhCCeEEEehHHHHHHHHcCCC----------------------------
Confidence            75 5678899999988774 99999999999999999999999998864210                            


Q ss_pred             CCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhc-CCceeeecccccCCcceeeccCC-CCcccCc
Q 010536          360 MPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESCSGCFTSLAD-VFNMIGT  437 (508)
Q Consensus       360 ~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~-~~~~~~s  437 (508)
                               ....++        +++|.+++||+++++++.+++.+.+ +..+++.||+||+++.++..... .....++
T Consensus       258 ---------~~~~~~--------~~l~~~~~gG~~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~  320 (497)
T PRK06145        258 ---------RDRFDL--------DSLAWCIGGGEKTPESRIRDFTRVFTRARYIDAYGLTETCSGDTLMEAGREIEKIGS  320 (497)
T ss_pred             ---------cccccc--------ccceEEEecCCCCCHHHHHHHHHHcCCCceEEeecCcccCCcceeccCccccccCCC
Confidence                     011122        2789999999999999999999988 67899999999998866554332 2223478


Q ss_pred             cccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccccCCccccCcEEEEcCCCC
Q 010536          438 VGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQPMEL  508 (508)
Q Consensus       438 ~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDlg~~d~dG~  508 (508)
                      +|+|+++++++|+| +++..++.  ++.|||+++|++++.||+++++.+.+.|.++||+|||+|++|+||+
T Consensus       321 ~G~~~~~~~~~i~~-~~~~~~~~--~~~Gel~v~g~~~~~Gy~~~~~~~~~~~~~~~~~TGDl~~~~~~g~  388 (497)
T PRK06145        321 TGRALAHVEIRIAD-GAGRWLPP--NMKGEICMRGPKVTKGYWKDPEKTAEAFYGDWFRSGDVGYLDEEGF  388 (497)
T ss_pred             cccCCCCceEEEEC-CCCCCCCC--CCceEEEEECcchhhhhcCChHHHHHHHhCCCeeccceEEEcCCCc
Confidence            99999999999999 77766554  4899999999999999999999999999999999999999999985

>PLN03052 acetate--CoA ligase; Provisional

Probab=100.00  E-value=1.6e-49  Score=422.62  Aligned_cols=405  Identities=16%  Similarity=0.151  Sum_probs=303.6

Q ss_pred             CCCCCHH-HHHHHHHHhCCCCCceeeeeccCCC--CCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHH
Q 010536           40 AGLESPW-QFFCDSAKRIPNNQMLGGRKVSDGK--VGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWI  116 (508)
Q Consensus        40 ~~~~ti~-~~l~~~a~~~p~~~a~~~~~~~~~~--~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~  116 (508)
                      ....|+. ++|++++.++|+++|+++.   +..  ++.++.+||+||.++++++|++|+++|+++||+|+++++|+++++
T Consensus       171 g~~ln~~~~~l~~~~~~~pd~~Ai~~~---~e~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrVai~~pn~~e~v  247 (728)
T PLN03052        171 GAVLNVAECCLTPKPSKTDDSIAIIWR---DEGSDDLPVNRMTLSELRSQVSRVANALDALGFEKGDAIAIDMPMNVHAV  247 (728)
T ss_pred             CCEeEHHHHHHHHHhccCCCCeEEEEE---CCCCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHH
Confidence            3444554 4566666678999999987   432  335678999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChh---------hHhhcCccCCCCccEEEEecCCCchh
Q 010536          117 IAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP---------SILSCLPRCCLYLKTIVSFANVSSSQ  187 (508)
Q Consensus       117 ~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (508)
                      ++++||+++|++++|++|.++.+++.+++++++++++|+++....         .+.+..    .  ..++++.......
T Consensus       248 ia~LA~~~~Gav~vpi~p~~~~~~l~~rl~~~~~k~lit~d~~~~~gk~~~~~~~~~~~~----~--~~~iv~~~~~~~~  321 (728)
T PLN03052        248 IIYLAIILAGCVVVSIADSFAPSEIATRLKISKAKAIFTQDVIVRGGKSIPLYSRVVEAK----A--PKAIVLPADGKSV  321 (728)
T ss_pred             HHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHhc----C--CcEEEEeCCCCcc
Confidence            999999999999999999999999999999999999999875321         111111    1  1233332211000


Q ss_pred             hhhhhhcCceeeeHHHHHhcCCC-----CCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhcccc
Q 010536          188 KKEAEELGVSCFSWEEFLQLGTL-----DCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKV  262 (508)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~  262 (508)
                      .   .........|++++.....     .........+++++|+|||||||.||||+++|.+++..+......+     .
T Consensus       322 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~IlyTSGTTG~PKgVv~sh~~~l~~~~~~~~~~-----~  393 (728)
T PLN03052        322 R---VKLREGDMSWDDFLARANGLRRPDEYKAVEQPVEAFTNILFSSGTTGEPKAIPWTQLTPLRAAADAWAHL-----D  393 (728)
T ss_pred             c---cccccCCccHHHHHhccccccccccccccccCCCCcEEEEecCCCCCCCceEEECchHHHHHHHHHHHhc-----C
Confidence            0   0000113457776543210     1112223568999999999999999999999999877655544333     6


Q ss_pred             CCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEecC--CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChh
Q 010536          263 CSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGAL  340 (508)
Q Consensus       263 ~~~~~~~l~~~pl~~~~g~~~~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~  340 (508)
                      +..+|++++.+|+.|.++....+.+|+.|++++++++  .+..+++.++++++|++.++|++++.+.+.           
T Consensus       394 l~~~d~~~~~~~l~w~~g~~~v~~~L~~Gat~vl~~g~p~~~~~~~~i~~~~vT~l~~~Pt~l~~l~~~-----------  462 (728)
T PLN03052        394 IRKGDIVCWPTNLGWMMGPWLVYASLLNGATLALYNGSPLGRGFAKFVQDAKVTMLGTVPSIVKTWKNT-----------  462 (728)
T ss_pred             CCCCcEEEECCCcHHHhHHHHHHHHHHhCCEEEEeCCCCCCChHHHHHHHHCCCEEEECHHHHHHHHhc-----------
Confidence            7889999999999999998777899999999999875  557899999999999999999999987541           


Q ss_pred             HHHHHHHHHHHHhhhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcC-Cceeeeccccc
Q 010536          341 SKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG-APLTQGYGLTE  419 (508)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~-~~v~~~YG~TE  419 (508)
                                                ...+..+++        +||.+++||++++++...++.+.++ .++.+.||+||
T Consensus       463 --------------------------~~~~~~dls--------sLr~i~s~Ge~l~~~~~~~~~~~~~~~~i~~~yG~TE  508 (728)
T PLN03052        463 --------------------------NCMAGLDWS--------SIRCFGSTGEASSVDDYLWLMSRAGYKPIIEYCGGTE  508 (728)
T ss_pred             --------------------------CCcccCChh--------heeEEEecCCCCCHHHHHHHHHhcCCCCeEeeccChh
Confidence                                      111233444        8999999999999999998888766 58999999999


Q ss_pred             CCcceeeccCCCCcccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCc--ccccccCCccccccccc-----C
Q 010536          420 SCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNT--LFSGYYKRPDLTEEVIV-----D  492 (508)
Q Consensus       420 ~~~~~~~~~~~~~~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~--v~~gY~~~~~~~~~~~~-----~  492 (508)
                      +++.+..........++++|+|++|++++|+| ++|+.++.+..+.|||+++++.  ...+|+++.. ...-|.     .
T Consensus       509 ~~~~~~~~~~~~~~~~g~~g~p~~g~~v~v~d-~~g~~v~~g~~~~GEL~v~~~~~~~~~~~~~~~~-~~~yf~~~p~~~  586 (728)
T PLN03052        509 LGGGFVTGSLLQPQAFAAFSTPAMGCKLFILD-DSGNPYPDDAPCTGELALFPLMFGASSTLLNADH-YKVYFKGMPVFN  586 (728)
T ss_pred             hCcccccCCCCCCCCCCccccCCCCceEEEEC-CCCCCCCCCCCceEEEEEeCCCCCCCccccCchh-hhhhhhcCCCCC
Confidence            98765443332233458899999999999999 8888776653246999998653  2345666532 222231     2


Q ss_pred             C--ccccCcEEEEcCCCC
Q 010536          493 G--WFHTGDIGEWQPMEL  508 (508)
Q Consensus       493 g--w~~TGDlg~~d~dG~  508 (508)
                      |  ||+|||+|++|+||+
T Consensus       587 g~~~~~tGDl~~~d~dG~  604 (728)
T PLN03052        587 GKILRRHGDIFERTSGGY  604 (728)
T ss_pred             CCEEEecCceEEECCCCe
Confidence            3  999999999999995

>PRK07514 malonyl-CoA synthase; Validated

Probab=100.00  E-value=2.1e-49  Score=410.21  Aligned_cols=388  Identities=22%  Similarity=0.366  Sum_probs=312.8

Q ss_pred             CCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHHH
Q 010536           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (508)
Q Consensus        42 ~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~lA  121 (508)
                      .+++.+++..++ .+|+++|+.+.   ++     +.+||.||.++++++|.+|.+.|+++||+|+++++|+++++++++|
T Consensus         2 ~~~l~~~~~~~~-~~~~~~a~~~~---~~-----~~~Ty~eL~~~~~~la~~L~~~g~~~gd~v~i~~~~~~e~~v~~la   72 (504)
T PRK07514          2 NNNLFDALRAAF-ADRDAPFIETP---DG-----LRYTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLA   72 (504)
T ss_pred             CccHHHHHHHHh-hCCCCeEEEeC---CC-----CEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence            368999999999 99999999764   33     5899999999999999999999999999999999999999999999


Q ss_pred             HHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCceeeeH
Q 010536          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW  201 (508)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (508)
                      |+++|++++|+++..+.+++..+++.++++++++++.....+......  .....++.++....             ..+
T Consensus        73 ~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-------------~~~  137 (504)
T PRK07514         73 TLRAGAVFLPLNTAYTLAELDYFIGDAEPALVVCDPANFAWLSKIAAA--AGAPHVETLDADGT-------------GSL  137 (504)
T ss_pred             HHHcCcEEEECCCCCCHHHHHHHHHhCCCcEEEEccchhHHHHHhhhc--cCCceEEEecCCCc-------------ccH
Confidence            999999999999999999999999999999999998766554333221  12222333332111             011


Q ss_pred             HHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHH
Q 010536          202 EEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ  281 (508)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~  281 (508)
                      .+................+++++++|||||||.||+|.++|+++...+......+     ....++++++.+|++|..++
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~g~  212 (504)
T PRK07514        138 LEAAAAAPDDFETVPRGADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYW-----RFTPDDVLIHALPIFHTHGL  212 (504)
T ss_pred             HHhhhhcCcccCcccCCCCCeEEEEECCCCCCCCcEEEEecHHHHHHHHHHHHHh-----CCCCccEEEEecchHHHHHH
Confidence            1211111111223345678999999999999999999999999999887766655     67789999999999999998


Q ss_pred             HH-HHHHHHcCcEEEEecC-CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhcC
Q 010536          282 II-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKG  359 (508)
Q Consensus       282 ~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (508)
                      .. .+.+++.|+++++.+. ++..+++.+  .++|++.++|.++.+++..                              
T Consensus       213 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~i--~~~t~~~~~P~~~~~l~~~------------------------------  260 (504)
T PRK07514        213 FVATNVALLAGASMIFLPKFDPDAVLALM--PRATVMMGVPTFYTRLLQE------------------------------  260 (504)
T ss_pred             HHHHHHHHhcCcEEEECCCCCHHHHHHHH--HhheeeecHHHHHHHHHcC------------------------------
Confidence            74 6688999999998875 899999998  4799999999999887641                              


Q ss_pred             CCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCcceeeccCCCCcccCccc
Q 010536          360 MPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVG  439 (508)
Q Consensus       360 ~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~s~G  439 (508)
                             ...+..++        +++|.+++||+++++++.+.+.+.++..+++.||+||++....... ......+++|
T Consensus       261 -------~~~~~~~~--------~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~-~~~~~~~~~G  324 (504)
T PRK07514        261 -------PRLTREAA--------AHMRLFISGSAPLLAETHREFQERTGHAILERYGMTETNMNTSNPY-DGERRAGTVG  324 (504)
T ss_pred             -------CCCCcccc--------cceeeEEecCCCCCHHHHHHHHHHhCCcceeecccccccccccCCc-cccccCcccc
Confidence                   00111112        3899999999999999999999999999999999999876544322 2222347899


Q ss_pred             cccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccc-cCCccccCcEEEEcCCCC
Q 010536          440 VPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGDIGEWQPMEL  508 (508)
Q Consensus       440 ~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~-~~gw~~TGDlg~~d~dG~  508 (508)
                      .|+++++++|+|++++..++  .|+.|||+|+|+.++.||+++++.+.+.| .++||+|||+|++|++|+
T Consensus       325 ~~~~~~~v~i~d~~~~~~~~--~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~g~  392 (504)
T PRK07514        325 FPLPGVSLRVTDPETGAELP--PGEIGMIEVKGPNVFKGYWRMPEKTAEEFRADGFFITGDLGKIDERGY  392 (504)
T ss_pred             cCCCCcEEEEEECCCCCCCC--CCCceEEEEecCCccccccCCchhhhhhcccCCCeeecceEEEcCCcc
Confidence            99999999999944454444  45899999999999999999999999888 489999999999999984

>PRK10946 entE enterobactin synthase subunit E; Provisional

Probab=100.00  E-value=1.5e-49  Score=413.48  Aligned_cols=392  Identities=17%  Similarity=0.211  Sum_probs=312.4

Q ss_pred             CCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHHH
Q 010536           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (508)
Q Consensus        42 ~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~lA  121 (508)
                      +.++.++|.++++  |+++|+++.   +      +.+||.||.++++++|.+|.+.|+++|++|+++++|+++++++++|
T Consensus        24 ~~~~~~~~~~~a~--p~~~a~~~~---~------~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~v~~~n~~~~~~~~la   92 (536)
T PRK10946         24 DLPLTDILTRHAA--SDAIAVICG---E------RQFSYRELNQASDNLACSLRRQGIKPGDTALVQLGNVAEFYITFFA   92 (536)
T ss_pred             CccHHHHHHHhhC--CCCeEEEeC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCChHHHHHHHHH
Confidence            5689999999887  999999865   3      4699999999999999999999999999999999999999999999


Q ss_pred             HHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCCh----hhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCce
Q 010536          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI----PSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS  197 (508)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (508)
                      |+++|++++++.+.....++..+++.++++++++++...    ....+.+.......+.++......             
T Consensus        93 ~~~~G~v~v~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-------------  159 (536)
T PRK10946         93 LLKLGVAPVNALFSHQRSELNAYASQIEPALLIADRQHALFSDDDFLNTLVAEHSSLRVVLLLNDDG-------------  159 (536)
T ss_pred             HHHcCeEEecCCccccHHHHHHHHhhcCCCEEEEeccccccchHHHHHHHHhhCCCceEEEEecCCC-------------
Confidence            999999888777777788899999999999999986531    111122222223334443332210             


Q ss_pred             eeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHH
Q 010536          198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAH  277 (508)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~  277 (508)
                      ...+.++...............+++++++|||||||.||+|.++|+++...+......+     .+..++++++.+|++|
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~-----~~~~~~~~l~~~p~~h  234 (536)
T PRK10946        160 EHSLDDAINHPAEDFTATPSPADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEIC-----GFTPQTRYLCALPAAH  234 (536)
T ss_pred             CccHHHHhhCcccccccCCCCCCCeEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhc-----CCCCCceEEEecCccc
Confidence            12344444333222223344678999999999999999999999999999988876665     6788999999999999


Q ss_pred             HHHHHH--HHHHHHcCcEEEEecC-CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhh
Q 010536          278 IYDQII--ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLG  354 (508)
Q Consensus       278 ~~g~~~--~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (508)
                      .+++..  .+.+++.|+++++.+. ++..+++.++++++|++.++|.++..++..++.....                  
T Consensus       235 ~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~------------------  296 (536)
T PRK10946        235 NYPMSSPGALGVFLAGGTVVLAPDPSATLCFPLIEKHQVNVTALVPPAVSLWLQAIAEGGSR------------------  296 (536)
T ss_pred             cccchhhhHHHHhhcCcEEEECCCCCHHHHHHHHHHhCCcEEEeChHHHHHHHhhhcccCcc------------------
Confidence            888763  6778999999988764 8899999999999999999999999987543211000                  


Q ss_pred             hhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCcceeeccCCCCcc
Q 010536          355 NMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNM  434 (508)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~  434 (508)
                                       ..+        +++|.+++||+++++++.+.+.+.+|+++++.||+||++.............
T Consensus       297 -----------------~~~--------~~l~~v~~gg~~l~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~~  351 (536)
T PRK10946        297 -----------------AQL--------ASLKLLQVGGARLSETLARRIPAELGCQLQQVFGMAEGLVNYTRLDDSDERI  351 (536)
T ss_pred             -----------------ccc--------cceeEEEECCCCCCHHHHHHHHHhcCCeEEEeecccccceeeecCCCccccc
Confidence                             001        3899999999999999999999989999999999999654433222222233


Q ss_pred             cCcccccc-CCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccc-cCCccccCcEEEEcCCCC
Q 010536          435 IGTVGVPM-TTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGDIGEWQPMEL  508 (508)
Q Consensus       435 ~~s~G~p~-~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~-~~gw~~TGDlg~~d~dG~  508 (508)
                      .+++|+|+ |+..++|+| +++..++.  |+.|||+++|+.++.||+++++.+.+.| .+|||+|||+|++|+||+
T Consensus       352 ~~~~G~p~~~~~~v~i~d-~~~~~~~~--g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~d~~~~TGDl~~~d~~G~  424 (536)
T PRK10946        352 FTTQGRPMSPDDEVWVAD-ADGNPLPQ--GEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLVSIDPDGY  424 (536)
T ss_pred             cccCCcccCCCceEEEEC-CCCCCCCC--CCccEEEEecCccchhhcCCcccchhhcccCCceecCceEEECCCCc
Confidence            47899999 799999999 77766554  4999999999999999999999999888 689999999999999985

>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated

Probab=100.00  E-value=2.6e-49  Score=410.73  Aligned_cols=395  Identities=23%  Similarity=0.328  Sum_probs=321.5

Q ss_pred             CHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHHHHH
Q 010536           44 SPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACN  123 (508)
Q Consensus        44 ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~lA~~  123 (508)
                      +++++|+..++++|+++|+.+.   +      +.+||+||.+++.++|++|.+.|+++||+|+++++|+++++++++||+
T Consensus         1 ~~~~~~~~~~~~~p~~~a~~~~---~------~~~ty~~l~~~v~~~a~~l~~~g~~~~~~V~i~~~n~~~~~~~~lA~~   71 (515)
T TIGR03098         1 LLHHLLEDAAARLPDATALVHH---D------RTLTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAA   71 (515)
T ss_pred             CHHHHHHHHHHHCCCCeEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHH
Confidence            4788999999999999999875   3      479999999999999999999999999999999999999999999999


Q ss_pred             HcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCceeeeHHH
Q 010536          124 SQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEE  203 (508)
Q Consensus       124 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (508)
                      ++|++++|+++.++.+++..+++.++++++|++......+...... +.....++.++.......     .......|++
T Consensus        72 ~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~  145 (515)
T TIGR03098        72 LAGGVFVPINPLLKAEQVAHILADCNVRLLVTSSERLDLLHPALPG-CHDLRTLILVGEPAHASE-----GGGESPSWPK  145 (515)
T ss_pred             hcCEEEEeCCCCCCHHHHHHHHHcCCCeEEEEccchhhhhHhhhhc-ccccceEEEecCcccccC-----CccccccHHH
Confidence            9999999999999999999999999999999988766555433322 234455555543321110     0112335666


Q ss_pred             HHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHH
Q 010536          204 FLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII  283 (508)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~  283 (508)
                      +..... .........+++++++|||||||.||+|.+||.++...+......+     .+..+|++++.+|++|.+++..
T Consensus       146 ~~~~~~-~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~~~~  219 (515)
T TIGR03098       146 LLALGD-ADPPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYL-----ENRPDDRLLAVLPLSFDYGFNQ  219 (515)
T ss_pred             hhcccc-ccccCCCCcCCeEEEEECCCCCCCCceEEEecHHHHHHHHHHHHHh-----CCCcccEEEEECchhhHhHHHH
Confidence            544332 1122334568899999999999999999999999998888776655     6788999999999999999988


Q ss_pred             HHHHHHcCcEEEEecC-CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhcCCCC
Q 010536          284 ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQ  362 (508)
Q Consensus       284 ~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (508)
                      .+.++..|+++++.+. ++..+++.++++++|++.++|+++..+.+...                               
T Consensus       220 ~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-------------------------------  268 (515)
T TIGR03098       220 LTTAFYVGATVVLHDYLLPRDVLKALEKHGITGLAAVPPLWAQLAQLDW-------------------------------  268 (515)
T ss_pred             HHHHHHcCCEEEEcCCCCHHHHHHHHHHcCCceEecChHHHHHHHhccc-------------------------------
Confidence            8899999999998875 89999999999999999999999998754100                               


Q ss_pred             CcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhc-CCceeeecccccCCcceeeccCCCCcccCccccc
Q 010536          363 NKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVP  441 (508)
Q Consensus       363 ~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~~~~~~~s~G~p  441 (508)
                         .    ..++        .++|.+++||+++++++.+.+++.+ +..+++.||+||++..............+++|+|
T Consensus       269 ---~----~~~~--------~~l~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~vG~~  333 (515)
T TIGR03098       269 ---P----ESAA--------PSLRYLTNSGGAMPRATLSRLRSFLPNARLFLMYGLTEAFRSTYLPPEEVDRRPDSIGKA  333 (515)
T ss_pred             ---C----CCCc--------cceEEEEecCCcCCHHHHHHHHHHCCCCeEeeeeccccccceEecccccccCCCCCccee
Confidence               0    0011        3899999999999999999999988 6889999999998765544333333445899999


Q ss_pred             cCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCccccccccc------------CCccccCcEEEEcCCCC
Q 010536          442 MTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV------------DGWFHTGDIGEWQPMEL  508 (508)
Q Consensus       442 ~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~~------------~gw~~TGDlg~~d~dG~  508 (508)
                      +++++++|++ +++..++  .++.|||+++|+.++.||+++++.+.+.|.            ++||+|||+|++|+||+
T Consensus       334 ~~~~~~~i~~-~~~~~~~--~~~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~  409 (515)
T TIGR03098       334 IPNAEVLVLR-EDGSECA--PGEEGELVHRGALVAMGYWNDPEKTAERFRPLPPRPGELHLPELAVWSGDTVRRDEEGF  409 (515)
T ss_pred             cCCCEEEEEC-CCCCCCC--CCCceEEEEcCchhhccccCCchhhhhhhhccCCccccccccccceeccceEEEcCCce
Confidence            9999999999 7776654  458999999999999999999988766552            34899999999999985

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=100.00  E-value=4.3e-50  Score=460.45  Aligned_cols=403  Identities=17%  Similarity=0.125  Sum_probs=309.8

Q ss_pred             CCCHHHHHHHHHHhCCCCCceeeeeccCCC---CCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHH
Q 010536           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGK---VGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIA  118 (508)
Q Consensus        42 ~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~---~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~  118 (508)
                      ..++.++|+++++++|+++|+++.   ...   ....+.+||+||.++++++|++|.+.|+++||+|+++++|+++++++
T Consensus       235 ~~~l~~~~~~~a~~~pd~~A~~~~---~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~~~~~i~~  311 (1389)
T TIGR03443       235 RGAIHDIFADNAEKHPDRTCVVET---PSFLDPSSKTRSFTYKQINEASNILAHYLLKTGIKRGDVVMIYAYRGVDLVVA  311 (1389)
T ss_pred             cCcHHHHHHHHHHhCCCCeEEEec---cccccccCCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEecCCHHHHHH
Confidence            468999999999999999999864   211   12336899999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCCh---hhHhhcCccCC---CCccEEEEecCCCchhhhhhh
Q 010536          119 MEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI---PSILSCLPRCC---LYLKTIVSFANVSSSQKKEAE  192 (508)
Q Consensus       119 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  192 (508)
                      ++||+++|++++|++|.++.+++.++++.++++++|++....   ..+........   ..+..+..........     
T Consensus       312 ~lA~l~~G~~~vpldp~~p~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  386 (1389)
T TIGR03443       312 VMGVLKAGATFSVIDPAYPPARQTIYLSVAKPRALIVIEKAGTLDQLVRDYIDKELELRTEIPALALQDDGSLVG-----  386 (1389)
T ss_pred             HHHHHhhCcEEeccCCCCcHHHHHHHHHhcCCCEEEEeccccccchhhhhhhhcccccccccceEEecccccccc-----
Confidence            999999999999999999999999999999999999876421   11111111000   0111111111000000     


Q ss_pred             hcCceeeeHHHHHhcC---CCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEE
Q 010536          193 ELGVSCFSWEEFLQLG---TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTY  269 (508)
Q Consensus       193 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (508)
                        ........+.....   ..........++++++|+|||||||.||||+++|+++...+......+     .+..+|++
T Consensus       387 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~  459 (1389)
T TIGR03443       387 --GSLEGGETDVLAPYQALKDTPTGVVVGPDSNPTLSFTSGSEGIPKGVLGRHFSLAYYFPWMAKRF-----GLSENDKF  459 (1389)
T ss_pred             --cccccccccccccccccccCCCCCcCCCCCceEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhc-----CCCCCCEE
Confidence              00000000000000   001112234578999999999999999999999999999988877766     67889999


Q ss_pred             EEecChHHHHHHHHHHHHHHcCcEEEEecC----CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHH
Q 010536          270 FSFLPLAHIYDQIIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLF  345 (508)
Q Consensus       270 l~~~pl~~~~g~~~~~~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~  345 (508)
                      ++.+|++|..++..++.+|+.|+++++.+.    ++..+++.++++++|+++++|++++.|.....              
T Consensus       460 ~~~~~~~~d~~~~~i~~~L~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~--------------  525 (1389)
T TIGR03443       460 TMLSGIAHDPIQRDMFTPLFLGAQLLVPTADDIGTPGRLAEWMAKYGATVTHLTPAMGQLLSAQAT--------------  525 (1389)
T ss_pred             EEecCceecchHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHhCCeEEEeCHHHHHHHHhccc--------------
Confidence            999999999888888999999999998753    68899999999999999999999988743100              


Q ss_pred             HHHHHHHhhhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhc-CCceeeecccccCCcce
Q 010536          346 EFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESCSGC  424 (508)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~  424 (508)
                                                .++        +++|.+++||+++++++.+.+.+.. ++.+++.||+||++..+
T Consensus       526 --------------------------~~~--------~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~  571 (1389)
T TIGR03443       526 --------------------------TPI--------PSLHHAFFVGDILTKRDCLRLQTLAENVCIVNMYGTTETQRAV  571 (1389)
T ss_pred             --------------------------ccC--------CCccEEEEecccCCHHHHHHHHHhCCCCEEEECccCCccceeE
Confidence                                      001        3899999999999999999988765 78999999999998766


Q ss_pred             eeccCCC----------CcccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCccccccccc---
Q 010536          425 FTSLADV----------FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV---  491 (508)
Q Consensus       425 ~~~~~~~----------~~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~~---  491 (508)
                      +......          .....++|+|+++++++|+| +++...++..|+.|||+|+|++++.||+++|+.+.+.|.   
T Consensus       572 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd-~~~~~~~~~~G~~GEL~i~G~~v~~GY~~~p~~t~~~f~~~~  650 (1389)
T TIGR03443       572 SYFEIPSRSSDSTFLKNLKDVMPAGKGMKNVQLLVVN-RNDRTQTCGVGEVGEIYVRAGGLAEGYLGLPELNAEKFVNNW  650 (1389)
T ss_pred             EEEEccccccccchhhcccCcCcCCCccCCCEEEEEC-CccCCCcCCCCCceEEEecccccchhcCCChhHhhhhccCCc
Confidence            6432211          11235789999999999999 655444555669999999999999999999999988872   


Q ss_pred             --------------------------CCccccCcEEEEcCCCC
Q 010536          492 --------------------------DGWFHTGDIGEWQPMEL  508 (508)
Q Consensus       492 --------------------------~gw~~TGDlg~~d~dG~  508 (508)
                                                ++||+|||+|++|+||+
T Consensus       651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~TGDlg~~~~dG~  693 (1389)
T TIGR03443       651 FVDPSHWIDLDKENNKPEREFWLGPRDRLYRTGDLGRYLPDGN  693 (1389)
T ss_pred             ccCcccccccccccccccccccCCCccceeecCCceeEcCCCC
Confidence                                      47999999999999985

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>PRK12476 putative fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=7.5e-50  Score=421.76  Aligned_cols=392  Identities=18%  Similarity=0.199  Sum_probs=297.8

Q ss_pred             CCCCHHHHHHHHHHhCCCCCceeeeeccCCC---CCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHH
Q 010536           41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGK---VGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWII  117 (508)
Q Consensus        41 ~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~---~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~  117 (508)
                      ...|+.++++++++++|+++|+++.   +..   ++.++.+||+||.++++++|++|.+. +++||+|+++++|++++++
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~a~~~~---~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~V~l~~~n~~e~~~  107 (612)
T PRK12476         32 PGTTLISLIERNIANVGDTVAYRYL---DHSHSAAGCAVELTWTQLGVRLRAVGARLQQV-AGPGDRVAILAPQGIDYVA  107 (612)
T ss_pred             ccCcHHHHHHHHHHhCCCceEEEEE---ccCCCCCCcceEEeHHHHHHHHHHHHHHHHHh-cCCCCEEEEECCCChhHHH
Confidence            3478999999999999999999875   321   23456899999999999999999987 9999999999999999999


Q ss_pred             HHHHHHHcCCEEEec-cCCCC--HHHHHHHHHhcCceEEEEcCCChhhHhhcCccCC-CCccEEEEecCCCchhhhhhhh
Q 010536          118 AMEACNSQAITYVPL-YDTLG--ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCC-LYLKTIVSFANVSSSQKKEAEE  193 (508)
Q Consensus       118 ~~lA~~~~G~~~v~l-~~~~~--~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  193 (508)
                      +++||+++|++++|+ ++.++  .+++.++++.++++++|+++.....+........ .....++.++....        
T Consensus       108 ~~lA~~~aG~v~vpl~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--------  179 (612)
T PRK12476        108 GFFAAIKAGTIAVPLFAPELPGHAERLDTALRDAEPTVVLTTTAAAEAVEGFLRNLPRLRRPRVIAIDAIPD--------  179 (612)
T ss_pred             HHHHHHHcCceeEecCCCCcchhHHHHHHHHHhCCCCEEEEcHHHHHHHHHHHhhcccccCceEEEeccccc--------
Confidence            999999999999999 57776  7899999999999999998766554433221100 01123333322100        


Q ss_pred             cCceeeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhcccc-CCCCcEEEEe
Q 010536          194 LGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKV-CSEEDTYFSF  272 (508)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~  272 (508)
                                   .............+++++|+|||||||.||||.++|+++..++......+     . +..++++++.
T Consensus       180 -------------~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~~~~~l~~  241 (612)
T PRK12476        180 -------------SAGESFVPVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILSI-----DLLDRNTHGVSW  241 (612)
T ss_pred             -------------cccccccCCCCCCCceEEEEeCCCCCCCCceEEeeHHHHHHHHHHHHHHh-----ccCCCCceEEEe
Confidence                         00001111234568999999999999999999999999988776655444     4 5678999999


Q ss_pred             cChHHHHHHHHHHHHHHcCcEEEEec---C--CHHhHHHHhh--hhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHH
Q 010536          273 LPLAHIYDQIIETHCIHKGCSIGFWR---G--DVRYLMEDIQ--ELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLF  345 (508)
Q Consensus       273 ~pl~~~~g~~~~~~~l~~G~~~~~~~---~--~~~~~~~~i~--~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~  345 (508)
                      +|++|.+|+...+.+++.|+..++..   +  ++..+++.++  +++++.++.+|+++..++.....             
T Consensus       242 ~Pl~h~~g~~~~~~~~~~gg~~~~~~~~~~~~~p~~~~~~i~~~~~~~t~~~~~P~~~~~l~~~~~~-------------  308 (612)
T PRK12476        242 LPLYHDMGLSMIGFPAVYGGHSTLMSPTAFVRRPQRWIKALSEGSRTGRVVTAAPNFAYEWAAQRGL-------------  308 (612)
T ss_pred             CCcccccchHHHHHHHhcCCeEEEECHHHHHHHHHHHHHHHhhhccCCeEEEeCCcHHHHHHHHhcC-------------
Confidence            99999999986665555565555543   2  7889999995  58999999999998887542000             


Q ss_pred             HHHHHHHhhhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhc---CC---ceeeeccccc
Q 010536          346 EFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS---GA---PLTQGYGLTE  419 (508)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~---~~---~v~~~YG~TE  419 (508)
                                          ......++++        ++| +++||+++++++.++|.+.|   |+   .+++.||+||
T Consensus       309 --------------------~~~~~~~~l~--------~lr-~~~gg~~~~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE  359 (612)
T PRK12476        309 --------------------PAEGDDIDLS--------NVV-LIIGSEPVSIDAVTTFNKAFAPYGLPRTAFKPSYGIAE  359 (612)
T ss_pred             --------------------hhhhcCcchh--------Hhe-EEecccCCCHHHHHHHHHHHHhcCCCccccccccchhh
Confidence                                0000112233        789 99999999999999999887   44   4999999999


Q ss_pred             CCcceeeccCCCC--------------------------cccCccccccCCeEEEEeecCC-CCccCCCCCCCCeEEEec
Q 010536          420 SCSGCFTSLADVF--------------------------NMIGTVGVPMTTVEARLESVPE-MGYDALSSVPRGEICLRG  472 (508)
Q Consensus       420 ~~~~~~~~~~~~~--------------------------~~~~s~G~p~~~~~~~i~d~~~-~~~~~~~~~~~GEl~v~g  472 (508)
                      ++..++....+..                          ...+++|+|++|++++|+| ++ +..++.  |+.|||+++|
T Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~~~~g~~v~ivd-~~~g~~~~~--g~~GEl~v~g  436 (612)
T PRK12476        360 ATLFVATIAPDAEPSVVYLDREQLGAGRAVRVAADAPNAVAHVSCGQVARSQWAVIVD-PDTGAELPD--GEVGEIWLHG  436 (612)
T ss_pred             hheeeeccCCCCCceEEEEcHHHhhCCCeeecCCCCCCcceeEeCCCcCCCCEEEEEe-CCCCcCCCC--CCEEEEEEcC
Confidence            8765543222110                          0125899999999999999 66 766654  4899999999


Q ss_pred             CcccccccCCccccccccc-------------------CCccccCcEEEEcCCCC
Q 010536          473 NTLFSGYYKRPDLTEEVIV-------------------DGWFHTGDIGEWQPMEL  508 (508)
Q Consensus       473 ~~v~~gY~~~~~~~~~~~~-------------------~gw~~TGDlg~~d~dG~  508 (508)
                      ++++.||+++++.+.+.|.                   ++||+|||+|+++ ||+
T Consensus       437 ~~v~~GY~~~~~~t~~~f~~~~~~~~~~g~~~~~~~~~~~w~~TGDlg~~~-dG~  490 (612)
T PRK12476        437 DNIGRGYWGRPEETERTFGAKLQSRLAEGSHADGAADDGTWLRTGDLGVYL-DGE  490 (612)
T ss_pred             CcccccccCChHHHHHHHhhhhccccccccccccccCCCCeeeccccceeE-CCE
Confidence            9999999999999988873                   2599999999985 774

>PRK06188 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.2e-49  Score=411.80  Aligned_cols=392  Identities=21%  Similarity=0.261  Sum_probs=315.1

Q ss_pred             CCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHH
Q 010536           41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME  120 (508)
Q Consensus        41 ~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~l  120 (508)
                      ...|+.++|.++++++|+++|+++.   +      +.+||.||.++++++|..|.+.|+++|++|+++++|+++++++++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~gv~~~~~V~i~~~~~~~~~~~~l   80 (524)
T PRK06188         10 SGATYGHLLVSALKRYPDRPALVLG---D------TRLTYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIG   80 (524)
T ss_pred             CCccHHHHHHHHHHHCCCCeEEEEC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence            3468999999999999999999875   3      479999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCC-ChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCceee
Q 010536          121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQEN-KIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCF  199 (508)
Q Consensus       121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (508)
                      ||+++|+++++++|..+.+++..+++.++++.+++++. ........ ......+..++.+......            .
T Consensus        81 a~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------------~  147 (524)
T PRK06188         81 AAQLAGLRRTALHPLGSLDDHAYVLEDAGISTLIVDPAPFVERALAL-LARVPSLKHVLTLGPVPDG------------V  147 (524)
T ss_pred             HHHHhCCEEEecccCCCHHHHHHHHHhcCceEEEEecchhhHHHHHH-hhhcCCceEEEEeCCccch------------h
Confidence            99999999999999999999999999999999999876 33332221 1122333444444332110            0


Q ss_pred             eHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHH
Q 010536          200 SWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIY  279 (508)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~  279 (508)
                      ...+................+++++++|||||||.||+|.++|.++...+......+     ....++++++.+|++|.+
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~l~~~pl~~~~  222 (524)
T PRK06188        148 DLLAAAAKFGPAPLVAAALPPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLAEW-----EWPADPRFLMCTPLSHAG  222 (524)
T ss_pred             hHHHhhhccCcccccccCCCCCeEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhc-----CCCcCcEEEEecCchhhh
Confidence            011111111001111122345699999999999999999999999999888877666     778899999999999988


Q ss_pred             HHHHHHHHHHcCcEEEEecC-CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhc
Q 010536          280 DQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKK  358 (508)
Q Consensus       280 g~~~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (508)
                      ++. .+.+++.|+++++.+. ++..+++.++++++|+++++|+++..+++...                           
T Consensus       223 g~~-~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~---------------------------  274 (524)
T PRK06188        223 GAF-FLPTLLRGGTVIVLAKFDPAEVLRAIEEQRITATFLVPTMIYALLDHPD---------------------------  274 (524)
T ss_pred             hHH-HHHHHHcCCEEEEcCCCCHHHHHHHHHHhCCEEEEehHHHHHHHHhCcC---------------------------
Confidence            875 5677899999999875 89999999999999999999999998865210                           


Q ss_pred             CCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCcceeeccCCC-----Cc
Q 010536          359 GMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADV-----FN  433 (508)
Q Consensus       359 ~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~-----~~  433 (508)
                                ....++        +++|.+++||++++++..+.+.+.++..+++.||+||++..+.......     ..
T Consensus       275 ----------~~~~~l--------~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~  336 (524)
T PRK06188        275 ----------LRTRDL--------SSLETVYYGASPMSPVRLAEAIERFGPIFAQYYGQTEAPMVITYLRKRDHDPDDPK  336 (524)
T ss_pred             ----------ccCCCC--------cceeEEEEcCCCCCHHHHHHHHHHhCchhhheeCccccCCceeecCchhccccccc
Confidence                      001112        3899999999999999999988888999999999999976655443321     22


Q ss_pred             ccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccccCCccccCcEEEEcCCCC
Q 010536          434 MIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQPMEL  508 (508)
Q Consensus       434 ~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDlg~~d~dG~  508 (508)
                      ..+++|+|+|+++++|+| +++..++.  |+.|||+++|+.++.||+++++.+...|.+|||+|||+|++|+||+
T Consensus       337 ~~~~~G~p~~g~~v~i~~-~~~~~~~~--g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~  408 (524)
T PRK06188        337 RLTSCGRPTPGLRVALLD-EDGREVAQ--GEVGEICVRGPLVMDGYWNRPEETAEAFRDGWLHTGDVAREDEDGF  408 (524)
T ss_pred             cCCccccccCCcEEEEEc-CCCCCCCC--CCeeEEEEECcchhhhhcCChHHhhhhhcCCceeecceEEEcCCcc
Confidence            347899999999999999 77766554  4899999999999999999999999889999999999999999985

>PRK08315 AMP-binding domain protein; Validated

Probab=100.00  E-value=4.3e-49  Score=413.02  Aligned_cols=399  Identities=24%  Similarity=0.388  Sum_probs=318.2

Q ss_pred             CCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHH
Q 010536           40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM  119 (508)
Q Consensus        40 ~~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~  119 (508)
                      ....++.++|.+.++++|+++|+++.   ++.    +.+||+||.++++++|..|.+.|+++||+|+++++|++++++++
T Consensus        13 ~~~~~l~~~l~~~~~~~~~~~ai~~~---~~~----~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~   85 (559)
T PRK08315         13 LLEQTIGQLLDRTAARYPDREALVYR---DQG----LRWTYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLTQ   85 (559)
T ss_pred             hhhccHHHHHHHHHHHCCCCeEEEEc---CCC----eEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHH
Confidence            34468999999999999999999876   443    57999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChh-----hHhhcCc------------cCCCCccEEEEecC
Q 010536          120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP-----SILSCLP------------RCCLYLKTIVSFAN  182 (508)
Q Consensus       120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-----~~~~~~~------------~~~~~~~~~~~~~~  182 (508)
                      +||+++|++++|++|..+.+++..+++.++++++++++....     .+.+...            ...+..+.++.++.
T Consensus        86 la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (559)
T PRK08315         86 FATAKIGAILVTINPAYRLSELEYALNQSGCKALIAADGFKDSDYVAMLYELAPELATCEPGQLQSARLPELRRVIFLGD  165 (559)
T ss_pred             HHHHHhCeEEEecCccCCHHHHHHHHHhcCCCEEEEeccccccchHHHHHHhhhhhhcccccccccccCCCceeEEeecc
Confidence            999999999999999999999999999999999999875421     1111110            00122333443332


Q ss_pred             CCchhhhhhhhcCceeeeHHHHHhcCC------CCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhh
Q 010536          183 VSSSQKKEAEELGVSCFSWEEFLQLGT------LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMF  256 (508)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~  256 (508)
                      ...          .....++++.....      ..........+++++++|||||||.||+|.++|.++..++......+
T Consensus       166 ~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~  235 (559)
T PRK08315        166 EKH----------PGMLNFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTHRNILNNGYFIGEAM  235 (559)
T ss_pred             cCC----------cccccHHHHHhhccccccccccchhccCCCCCcEEEEEcCCCCCCcceEEeeHHHHHHHHHHHHHhc
Confidence            110          11234444443221      01112234568899999999999999999999999998888877666


Q ss_pred             hhccccCCCCcEEEEecChHHHHHHHH-HHHHHHcCcEEEEec--CCHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHH
Q 010536          257 VVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWR--GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNK  333 (508)
Q Consensus       257 ~~~~~~~~~~~~~l~~~pl~~~~g~~~-~~~~l~~G~~~~~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~  333 (508)
                           .+..+++++..+|++|.+++.. .+.++..|+++++..  +++..+++.++++++|+++++|.++..++....  
T Consensus       236 -----~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~~~~~~~--  308 (559)
T PRK08315        236 -----KLTEEDRLCIPVPLYHCFGMVLGNLACVTHGATMVYPGEGFDPLATLAAVEEERCTALYGVPTMFIAELDHPD--  308 (559)
T ss_pred             -----CCCCCceEEEecCcHHHHHHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHcCCeEEecchHHHHHHHhCcc--
Confidence                 7788999999999999999875 678899999998654  389999999999999999999999987754111  


Q ss_pred             hhcCChhHHHHHHHHHHHHhhhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCC-cee
Q 010536          334 ISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGA-PLT  412 (508)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~-~v~  412 (508)
                                                         .+..++        +++|.+++||+++++++.+.+.+.++. .++
T Consensus       309 -----------------------------------~~~~~~--------~~lr~~~~~G~~~~~~~~~~~~~~~~~~~l~  345 (559)
T PRK08315        309 -----------------------------------FARFDL--------SSLRTGIMAGSPCPIEVMKRVIDKMHMSEVT  345 (559)
T ss_pred             -----------------------------------cCCCCc--------hhhheeEecCCCCCHHHHHHHHHHcCCccee
Confidence                                               011112        278999999999999999999988876 499


Q ss_pred             eecccccCCcceeeccCCC--CcccCccccccCCeEEEEeecCC-CCccCCCCCCCCeEEEecCcccccccCCccccccc
Q 010536          413 QGYGLTESCSGCFTSLADV--FNMIGTVGVPMTTVEARLESVPE-MGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEV  489 (508)
Q Consensus       413 ~~YG~TE~~~~~~~~~~~~--~~~~~s~G~p~~~~~~~i~d~~~-~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~  489 (508)
                      +.||+||++.+++......  .....++|+|+|+++++|+| ++ +..++.  |+.|||+|+|+.++.||+++++.+.+.
T Consensus       346 ~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d-~~~~~~~~~--g~~GEl~v~g~~~~~gy~~~~~~~~~~  422 (559)
T PRK08315        346 IAYGMTETSPVSTQTRTDDPLEKRVTTVGRALPHLEVKIVD-PETGETVPR--GEQGELCTRGYSVMKGYWNDPEKTAEA  422 (559)
T ss_pred             EEEcccccccceeecCcccchhhccCCCCccCCCcEEEEEc-CccCCcCCC--CCceEEEEECchhhhhhcCChhHHhhc
Confidence            9999999987666543322  23347899999999999999 66 766554  489999999999999999999998888


Q ss_pred             c-cCCccccCcEEEEcCCCC
Q 010536          490 I-VDGWFHTGDIGEWQPMEL  508 (508)
Q Consensus       490 ~-~~gw~~TGDlg~~d~dG~  508 (508)
                      | .++||+|||+|++|+||+
T Consensus       423 ~~~~~~~~TGD~~~~~~dg~  442 (559)
T PRK08315        423 IDADGWMHTGDLAVMDEEGY  442 (559)
T ss_pred             CCCCCCEEccceEEEcCCce
Confidence            8 789999999999999984

>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=4.1e-49  Score=412.52  Aligned_cols=410  Identities=22%  Similarity=0.338  Sum_probs=315.1

Q ss_pred             CCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHH
Q 010536           40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM  119 (508)
Q Consensus        40 ~~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~  119 (508)
                      +...++.++|.++++++|+++|+++.   +      ..+||.||.++++++|.+|.+.|+++||+|+++++|++++++++
T Consensus        20 ~~~~~i~~~l~~~a~~~p~~~a~~~~---~------~~lTy~~l~~~~~~~a~~L~~~gi~~gd~V~i~~~n~~~~~~~~   90 (557)
T PRK07059         20 SQYPSLADLLEESFRQYADRPAFICM---G------KAITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVAI   90 (557)
T ss_pred             CCCCCHHHHHHHHHHHcCCCceEEEc---C------ceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHH
Confidence            44578999999999999999999875   3      47999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhh---------
Q 010536          120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKE---------  190 (508)
Q Consensus       120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  190 (508)
                      +||+++|++++|++|..+.+++.++++.++++++|+++.....+......  .....++............         
T Consensus        91 la~~~~G~~~v~v~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (557)
T PRK07059         91 AAVLRAGYVVVNVNPLYTPRELEHQLKDSGAEAIVVLENFATTVQQVLAK--TAVKHVVVASMGDLLGFKGHIVNFVVRR  168 (557)
T ss_pred             HHHHhcCeEEeccCcccCHHHHHHHHHccCceEEEEchhhHHHHHHhhcc--cCCceeEEeccccccccccccccccccc
Confidence            99999999999999999999999999999999999987765544332221  1222222221110000000         


Q ss_pred             -h----hhcCceeeeHHHHHhcCC-CCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccc-c-
Q 010536          191 -A----EELGVSCFSWEEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGK-V-  262 (508)
Q Consensus       191 -~----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~-~-  262 (508)
                       .    .........++++..... .........++++++|+|||||||.||+|.++|.+++.++......+..... . 
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~  248 (557)
T PRK07059        169 VKKMVPAWSLPGHVRFNDALAEGARQTFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKKP  248 (557)
T ss_pred             ccccccccCCCCcccHHHHhhccCCCCCCCCCCCcCceEEEEeCCCCCCCCcEEEeecHHHHHHHHHHhhhhcccccccC
Confidence             0    000012234555554331 1222334567899999999999999999999999998776554332211000 1 


Q ss_pred             CCCCcEEEEecChHHHHHHH-HHHHHHHcCcEEEEecC--CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCCh
Q 010536          263 CSEEDTYFSFLPLAHIYDQI-IETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGA  339 (508)
Q Consensus       263 ~~~~~~~l~~~pl~~~~g~~-~~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~  339 (508)
                      ......+++.+|++|.+++. ..+.++..|++.++.+.  ++..+++.++++++|.+.++|.++..+.+..         
T Consensus       249 ~~~~~~~~~~~pl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~---------  319 (557)
T PRK07059        249 RPDQLNFVCALPLYHIFALTVCGLLGMRTGGRNILIPNPRDIPGFIKELKKYQVHIFPAVNTLYNALLNNP---------  319 (557)
T ss_pred             CCCCcEEEEeCCcHHHHHHHHHHHHHHhhcceEEEecCCcCHHHHHHHHHHhCCeeeecCHHHHHHHHcCc---------
Confidence            11345788899999998876 45677888888776653  8899999999999999999999999886411         


Q ss_pred             hHHHHHHHHHHHHhhhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeeccccc
Q 010536          340 LSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTE  419 (508)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE  419 (508)
                                                  .....+++        ++|.++.||+++++.+.++|.+.++.++++.||+||
T Consensus       320 ----------------------------~~~~~~~~--------~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE  363 (557)
T PRK07059        320 ----------------------------DFDKLDFS--------KLIVANGGGMAVQRPVAERWLEMTGCPITEGYGLSE  363 (557)
T ss_pred             ----------------------------CcCcCCch--------hheEEEeccccCCHHHHHHHHHHhCCCeeecccccc
Confidence                                        11112222        789999999999999999999989999999999999


Q ss_pred             CCcceeeccCCCCcccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccc-cCCccccC
Q 010536          420 SCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTG  498 (508)
Q Consensus       420 ~~~~~~~~~~~~~~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~-~~gw~~TG  498 (508)
                      ++.+++..........+++|+|+++++++|+| +++..++.+  +.|||+++|+.++.||+++++.+.+.| .+|||+||
T Consensus       364 ~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d-~~~~~~~~g--~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TG  440 (557)
T PRK07059        364 TSPVATCNPVDATEFSGTIGLPLPSTEVSIRD-DDGNDLPLG--EPGEICIRGPQVMAGYWNRPDETAKVMTADGFFRTG  440 (557)
T ss_pred             ccchhhcCCCCCCCcCCcccCccCCcEEEEEC-CCCCCCCCC--CceEEEEeCCccchhhhcCHHHHhhhcccCCceecC
Confidence            98876654433333447999999999999999 777766544  899999999999999999999988877 68999999


Q ss_pred             cEEEEcCCCC
Q 010536          499 DIGEWQPMEL  508 (508)
Q Consensus       499 Dlg~~d~dG~  508 (508)
                      |+|++|+||+
T Consensus       441 Dl~~~~~~g~  450 (557)
T PRK07059        441 DVGVMDERGY  450 (557)
T ss_pred             cEEEEcCCCc
Confidence            9999999985

>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase

Probab=100.00  E-value=3e-49  Score=418.73  Aligned_cols=406  Identities=17%  Similarity=0.161  Sum_probs=301.3

Q ss_pred             CCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHH
Q 010536           40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM  119 (508)
Q Consensus        40 ~~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~  119 (508)
                      .+..|+...+..   ++++++|+++.   +. ++..+.+||+||.+++.++|.+|+++|+++||+|+++++|++++++++
T Consensus        84 ~~~~n~~~~~~~---~~~~~~a~~~~---~~-~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~~n~~e~~~~~  156 (652)
T TIGR01217        84 GARLNYAENLLR---AAGTEPALLYV---DE-THEPAPVTWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAVVAM  156 (652)
T ss_pred             CCeeeHHHHHhc---cCCCCeEEEEE---CC-CCCeeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence            445566665544   35789999886   33 344578999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCCh---------hhHhhcCccCCCCccEEEEecCCCchhhhh
Q 010536          120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI---------PSILSCLPRCCLYLKTIVSFANVSSSQKKE  190 (508)
Q Consensus       120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (508)
                      +||+++|++++|++|.++.+++.+++++++++++|+++...         ..+.+... ..+.++.++.+..........
T Consensus       157 lA~~~~Gav~vp~~~~~~~~~l~~~l~~~~~k~li~~~~~~~~~k~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~  235 (652)
T TIGR01217       157 LATASVGAIWSSCSPDFGARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRK-ELPTLRAVVHIPYLGPRETEA  235 (652)
T ss_pred             HHHHHhCeEEEecCCCCCHHHHHHHHHhcCCcEEEEccccccCCcccchHHHHHHHHh-cCCCccEEEEEeCCCCccccc
Confidence            99999999999999999999999999999999999987542         22222221 223445555554221100000


Q ss_pred             hhhcCceeeeHHHHHhcC-CCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHH-HhhhhhhhhhccccCCCCcE
Q 010536          191 AEELGVSCFSWEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAE-VLSVDQMFVVTGKVCSEEDT  268 (508)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~-~~~~~~~~~~~~~~~~~~~~  268 (508)
                      .  .......|+++.... ...........+++++|+|||||||.||||+++|++++.+ .......+     .+.++|+
T Consensus       236 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~  308 (652)
T TIGR01217       236 P--KIDGALDLEDFTAAAQAAELVFEQLPFDHPLWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGLHC-----DLGPGDR  308 (652)
T ss_pred             c--cccCcccHHHHHhcccCCCCCceecCCCCCEEEEEcCCCCCCCCeEEecccHHHHHHHHHHHhcc-----CCCCCcE
Confidence            0  001234567766542 1122233456689999999999999999999999986643 33333333     6788999


Q ss_pred             EEEecChHHHHHHHHHHHHHHcCcEEEEecC-----CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHH
Q 010536          269 YFSFLPLAHIYDQIIETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKK  343 (508)
Q Consensus       269 ~l~~~pl~~~~g~~~~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~  343 (508)
                      +++.+|+.|... ..++.+|+.|++++++++     ++..+++.++++++|++..+|.+++.+.+. .            
T Consensus       309 ~~~~~~~~~~~~-~~~~~~l~~G~t~vl~~g~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~-~------------  374 (652)
T TIGR01217       309 LFYYTTTGWMMW-NWLVSGLATGATLVLYDGSPGFPATNVLWDIAERTGATLFGTSAKYVMACRKA-G------------  374 (652)
T ss_pred             EEEeCCcchhhh-HHHHHHHhcCcEEEEECCCCCCCCchHHHHHHHHhCCeEEecCHHHHHHHHhc-C------------
Confidence            999999999754 335579999999999853     678999999999999987777766655320 0            


Q ss_pred             HHHHHHHHHhhhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcC--CceeeecccccCC
Q 010536          344 LFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG--APLTQGYGLTESC  421 (508)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~--~~v~~~YG~TE~~  421 (508)
                                            .......+++        +||.+++||+++++++.+++.+.++  ..+.+.||+||++
T Consensus       375 ----------------------~~~~~~~~l~--------sLr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~  424 (652)
T TIGR01217       375 ----------------------VHPARTHDLS--------ALQCVASTGSPLPPDGFRWVYDEIKADVWLASISGGTDIC  424 (652)
T ss_pred             ----------------------CCccccCChh--------heeEEEeecCCCCHHHHHHHHHHhCCCceEEeccCHHHHh
Confidence                                  0001122343        8999999999999999999998875  4577899999975


Q ss_pred             cceeeccCCCCcccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecC--cccccccCCccccc--cc-c--cCCc
Q 010536          422 SGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGN--TLFSGYYKRPDLTE--EV-I--VDGW  494 (508)
Q Consensus       422 ~~~~~~~~~~~~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~--~v~~gY~~~~~~~~--~~-~--~~gw  494 (508)
                      +.............+++|.|.+|++++|+| ++|..+   .|+.|||+++||  +++.|||++++.+.  +. |  .+||
T Consensus       425 ~~~~~~~~~~~~~~g~~g~p~~g~~v~ivd-~~g~~~---~g~~GEl~v~gp~p~~~~gy~~~~~~t~~~~~~~~~~~g~  500 (652)
T TIGR01217       425 SCFAGANPTLPVHIGEIQAPGLGTAVQSWD-PEGKPV---TGEVGELVCTNPMPSMPIRFWNDPDGSKYRDAYFDTYPGV  500 (652)
T ss_pred             ccccCCCCCCCCcCCccCCCcCCCceEEEC-CCCCCC---CCCccEEEEecCCCccccceeCCCccchhHHhhhcCCCCE
Confidence            444332222223348899999999999999 888765   358999999996  68999999998653  22 2  2689


Q ss_pred             cccCcEEEEcCCCC
Q 010536          495 FHTGDIGEWQPMEL  508 (508)
Q Consensus       495 ~~TGDlg~~d~dG~  508 (508)
                      |+|||+|++|+||+
T Consensus       501 ~~tGDlg~~d~dG~  514 (652)
T TIGR01217       501 WRHGDWITLTPRGG  514 (652)
T ss_pred             EEcCCcEEECCCCc
Confidence            99999999999996

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.

>TIGR03205 pimA dicarboxylate--CoA ligase PimA

Probab=100.00  E-value=1.3e-48  Score=407.35  Aligned_cols=409  Identities=23%  Similarity=0.347  Sum_probs=312.9

Q ss_pred             CCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHH
Q 010536           41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME  120 (508)
Q Consensus        41 ~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~l  120 (508)
                      .+.++.++|.++++.+|+++|+.+.   +      +.+||.||.++++++|.+|.+.|+++||+|+++++|+++++++++
T Consensus        19 ~~~~~~~~~~~~~~~~p~~~a~~~~---~------~~~ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~l   89 (541)
T TIGR03205        19 ARGTLPDLLSKAAADYGPRPALEFR---D------RPITYTELEAMAETAAAALLRAGYGKDASVALYLGNTPDHPINFF   89 (541)
T ss_pred             CCCCHHHHHHHHHHHcCCCceEEEC---C------cEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHH
Confidence            4568999999999999999999764   3      479999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCC--hhhHhhcCccCCCCccEEEEecCCCc-hhhhh--hhhcC
Q 010536          121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENK--IPSILSCLPRCCLYLKTIVSFANVSS-SQKKE--AEELG  195 (508)
Q Consensus       121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~  195 (508)
                      ||+++|++++|++|..+.+++.++++.++++++|+++..  ...+.+....  ..+..+++...... .....  .....
T Consensus        90 a~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~vi~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (541)
T TIGR03205        90 GALKAGARVVHLSPLDGERALSHKLSDSGARLLITSDLAALLPMALKFLEK--GLLDRLIVCEDDNWGKVGTPQAPIPAD  167 (541)
T ss_pred             HHHhcCeEEEecCCCCCHHHHHHHHhhcCceEEEEeCchhhhHHHHHhhhc--ccceEEEEecccccccccccccccCCC
Confidence            999999999999999999999999999999999998632  1111111111  11233333322110 00000  00011


Q ss_pred             ceeeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhh-ccccCCCCcEEEEecC
Q 010536          196 VSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVV-TGKVCSEEDTYFSFLP  274 (508)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~p  274 (508)
                      ....+++++..............++++++++|||||||.||+|.++|.++....... ..+.. ........+++++.+|
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~-~~~~~~~~~~~~~~~~~l~~~p  246 (541)
T TIGR03205       168 PRIVTYADFVKGAAAPAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIY-DVWGKPSRATRGDVERVICVLP  246 (541)
T ss_pred             cccccHHHHHhcCCCCCCCCCCCccCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHH-HhhcccccccCCCCceEEEecc
Confidence            123456666654322222334567899999999999999999999999987654422 11100 0012234578999999


Q ss_pred             hHHHHHHHH-HHHHHHcCcEEEEecC-CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHH
Q 010536          275 LAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYK  352 (508)
Q Consensus       275 l~~~~g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (508)
                      ++|.+++.. .+.++..|+++++... ++..+++.++++++|++.++|+++..+++..                      
T Consensus       247 ~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~----------------------  304 (541)
T TIGR03205       247 LFHIYALTVILLRSLRRGDLISLHQRFDVAAVFRDIEEKRATVFPGVPTMWIALANDP----------------------  304 (541)
T ss_pred             HHHHHHHHHHHHHHHhcCCEEEecCCCCHHHHHHHHHHcCCeEeechHHHHHHHHhCc----------------------
Confidence            999998875 6678899999888764 8999999999999999999999998875310                      


Q ss_pred             hhhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCcceeeccCCCC
Q 010536          353 LGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVF  432 (508)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~  432 (508)
                                     .....++        +++|.+++||+++++++.+++.+.++..+++.||+||++..++.......
T Consensus       305 ---------------~~~~~~~--------~~l~~i~~gg~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~  361 (541)
T TIGR03205       305 ---------------SLEKRDL--------SSLATIGSGGAPLPVEVANFFERKTGLKLKSGWGMTETCSPGTGHPPEGP  361 (541)
T ss_pred             ---------------cccccCc--------cccceEEEccccCCHHHHHHHHHHhCCCeecccccccCCcccccCCCCCC
Confidence                           0011112        27899999999999999999999889999999999999877665543333


Q ss_pred             cccCccccccCCeEEEEeec-CCCCccCCCCCCCCeEEEecCcccccccCCcccccccccCCccccCcEEEEcCCCC
Q 010536          433 NMIGTVGVPMTTVEARLESV-PEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQPMEL  508 (508)
Q Consensus       433 ~~~~s~G~p~~~~~~~i~d~-~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDlg~~d~dG~  508 (508)
                      ...+++|+|++++.++|.+. +++..++  .|+.|||+++|++++.||+++++.+.+.|.++||+|||+|++++||+
T Consensus       362 ~~~~~~G~~~~~~~~~v~~~d~~~~~~~--~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~TGD~~~~~~~g~  436 (541)
T TIGR03205       362 DKPGSIGLMLPGIELDVVSLDDPTKVLP--PGEVGELRIRGPNVTRGYWNRPEESAEAFVGDRFLTGDIGYMDTDGY  436 (541)
T ss_pred             CCCCCcceeccCceeEEEecCCCCccCC--CCCeeEEEEecCCccccccCChhhhHhhhccCCcccCceEEEcCCce
Confidence            33478999999999988752 3444443  45899999999999999999999999999899999999999999984

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.

>PRK12583 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.1e-48  Score=410.03  Aligned_cols=398  Identities=24%  Similarity=0.394  Sum_probs=315.5

Q ss_pred             CCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHH
Q 010536           41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME  120 (508)
Q Consensus        41 ~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~l  120 (508)
                      ...++.++|.+.++++|+++|+++.   +..    +.+||.||.++++++|.+|.+.|+++||+|+++++|+++++++++
T Consensus        16 ~~~~l~~~l~~~~~~~p~~~a~~~~---~~~----~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~~   88 (558)
T PRK12583         16 LTQTIGDAFDATVARFPDREALVVR---HQA----LRYTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQF   88 (558)
T ss_pred             ccCcHHHHHHHHHHHCCCCeEEEec---CCC----cEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHH
Confidence            3468999999999999999999875   332    579999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChh-----hHhhcCc------------cCCCCccEEEEecCC
Q 010536          121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP-----SILSCLP------------RCCLYLKTIVSFANV  183 (508)
Q Consensus       121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-----~~~~~~~------------~~~~~~~~~~~~~~~  183 (508)
                      ||+++|++++++++..+.+++..+++.++++++|+++....     .+.+...            ...+.+..++.....
T Consensus        89 a~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (558)
T PRK12583         89 ATARIGAILVNINPAYRASELEYALGQSGVRWVICADAFKTSDYHAMLQELLPGLAEGQPGALACERLPELRGVVSLAPA  168 (558)
T ss_pred             HHHhhCCEEEecCCCCCHHHHHHHHHhcCCcEEEEeccccccchhHHHHHHhhhhccccccccccccCCcceEEEEecCC
Confidence            99999999999999999999999999999999999764321     1111110            011222333333221


Q ss_pred             CchhhhhhhhcCceeeeHHHHHhcCCC------CCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhh
Q 010536          184 SSSQKKEAEELGVSCFSWEEFLQLGTL------DCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV  257 (508)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~  257 (508)
                      ..          .....|++.......      .........+++++++|||||||.||+|.++|.++...+......+ 
T Consensus       169 ~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~PK~v~~s~~~l~~~~~~~~~~~-  237 (558)
T PRK12583        169 PP----------PGFLAWHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESL-  237 (558)
T ss_pred             CC----------ccccchHhhhhcccccccccccccccccCCCCcEEEEECCCCCCCCceEEeeHHHHHHHHHHHHHHh-
Confidence            11          112234444332210      0111233568899999999999999999999999998888776665 


Q ss_pred             hccccCCCCcEEEEecChHHHHHHHH-HHHHHHcCcEEEEec--CCHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHh
Q 010536          258 VTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWR--GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKI  334 (508)
Q Consensus       258 ~~~~~~~~~~~~l~~~pl~~~~g~~~-~~~~l~~G~~~~~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~  334 (508)
                          .+..+|++++.+|++|.+|... .+.++..|+++++..  .++..+++.++++++|++.++|+++..++....   
T Consensus       238 ----~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~v~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~---  310 (558)
T PRK12583        238 ----GLTEHDRLCVPVPLYHCFGMVLANLGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMFIAELDHPQ---  310 (558)
T ss_pred             ----CCCCCCeEEEecCchhhhhHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHcccc---
Confidence                6788999999999999999875 677899999988764  389999999999999999999999887653110   


Q ss_pred             hcCChhHHHHHHHHHHHHhhhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcC-Cceee
Q 010536          335 SSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG-APLTQ  413 (508)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~-~~v~~  413 (508)
                                                        .+..++        +++|.+++||+++++++.+++.+.++ ..+++
T Consensus       311 ----------------------------------~~~~~~--------~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~  348 (558)
T PRK12583        311 ----------------------------------RGNFDL--------SSLRTGIMAGAPCPIEVMRRVMDEMHMAEVQI  348 (558)
T ss_pred             ----------------------------------ccCCCc--------hhheEEEecCCCCCHHHHHHHHHHcCCcceec
Confidence                                              001112        27999999999999999999988886 47999


Q ss_pred             ecccccCCcceeeccCCC--CcccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccc-
Q 010536          414 GYGLTESCSGCFTSLADV--FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-  490 (508)
Q Consensus       414 ~YG~TE~~~~~~~~~~~~--~~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~-  490 (508)
                      .||+||++.+++......  .....++|+|++++.++|+| +++..++.  |+.|||+++|+.++.||+++++.+.+.| 
T Consensus       349 ~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d-~~~~~~~~--g~~Gel~v~g~~~~~gy~~~~~~~~~~~~  425 (558)
T PRK12583        349 AYGMTETSPVSLQTTAADDLERRVETVGRTQPHLEVKVVD-PDGATVPR--GEIGELCTRGYSVMKGYWNNPEATAESID  425 (558)
T ss_pred             cccccccccceeccCcccccccccCCCCccCCCCeEEEEC-CCCCCCCC--CCeeEEEEEeCccchhhcCChHHHHhhcC
Confidence            999999998776544322  22347899999999999999 77655554  4899999999999999999999988887 


Q ss_pred             cCCccccCcEEEEcCCCC
Q 010536          491 VDGWFHTGDIGEWQPMEL  508 (508)
Q Consensus       491 ~~gw~~TGDlg~~d~dG~  508 (508)
                      .++||+|||+|++|+||+
T Consensus       426 ~~~~~~TGDl~~~~~dg~  443 (558)
T PRK12583        426 EDGWMHTGDLATMDEQGY  443 (558)
T ss_pred             CCCCeeccceEEECCCcc
Confidence            789999999999999985

>TIGR02262 benz_CoA_lig benzoate-CoA ligase family

Probab=100.00  E-value=1e-48  Score=405.14  Aligned_cols=392  Identities=20%  Similarity=0.238  Sum_probs=316.7

Q ss_pred             CCCHHHHHHHH-HHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHH
Q 010536           42 LESPWQFFCDS-AKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME  120 (508)
Q Consensus        42 ~~ti~~~l~~~-a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~l  120 (508)
                      .++..++++++ ++.+||++|+++.   +      +.+||.||.++++++|++|.+.|+++|++|+++++|+++++++++
T Consensus         3 ~~~~~~~~~~~~~~~~p~~~a~~~~---~------~~~ty~~l~~~~~~~a~~L~~~g~~~g~~v~l~~~~~~~~~~~~~   73 (508)
T TIGR02262         3 YNAAEDLLDRNVVEGRGGKTAFIDD---I------SSLSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFL   73 (508)
T ss_pred             chHHHHHHHHHHhcccCCceEEEeC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence            35667778776 6779999999754   3      479999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCceeee
Q 010536          121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFS  200 (508)
Q Consensus       121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (508)
                      ||+++|++++|+++..+.+++.++++.++++++|++......+.+... ..+....++..+....           ....
T Consensus        74 a~~~~G~~~v~l~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----------~~~~  141 (508)
T TIGR02262        74 GAIRAGIVPVALNTLLTADDYAYMLEDSRARVVFVSGELLPVIKAALG-KSPHLEHRVVVGRPEA-----------GEVQ  141 (508)
T ss_pred             HHHHcCcEEeeccCCCCHHHHHHHHHhcCCeEEEEchhhHHHHHHHHh-cCCCccEEEEeCCCCc-----------cccc
Confidence            999999999999999999999999999999999999877665544322 2233444444432211           1223


Q ss_pred             HHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhh-hhhhhhhccccCCCCcEEEEecChHHHH
Q 010536          201 WEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLS-VDQMFVVTGKVCSEEDTYFSFLPLAHIY  279 (508)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~pl~~~~  279 (508)
                      +.++.........+....++++++++|||||||.||+|.++|+++...+.. ....+     .+..+|+++..+|++|.+
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~  216 (508)
T TIGR02262       142 LAELLATESEQFKPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTL-----GIREDDVVFSAAKLFFAY  216 (508)
T ss_pred             HHHHhhcCCCccCCCCCCCCCcEEEEeCCCCCCCCcEEEEechhHHHHHHHHhHHhc-----CCCCCCEEEEcCchHHHH
Confidence            444443332222233455789999999999999999999999999887765 23333     678899999999999999


Q ss_pred             HHHH-HHHHHHcCcEEEEecC--CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhh
Q 010536          280 DQII-ETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNM  356 (508)
Q Consensus       280 g~~~-~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (508)
                      ++.. .+.++..|+++++.+.  ++..+++.++++++|.+.++|.++..+++...                         
T Consensus       217 ~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~~~~~~~-------------------------  271 (508)
T TIGR02262       217 GLGNALTFPMSVGATTVLMGERPTPDAVFDRLRRHQPTIFYGVPTLYAAMLADPN-------------------------  271 (508)
T ss_pred             HHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHCCcEEecchHHHHHHhcCcc-------------------------
Confidence            9864 6678999999988763  79999999999999999999998887643100                         


Q ss_pred             hcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCcceeeccCCCCcccC
Q 010536          357 KKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIG  436 (508)
Q Consensus       357 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~  436 (508)
                                  ......        .++|.+++||+++++++.+.|.+.+|.++++.||+||++.++.....+.. ..+
T Consensus       272 ------------~~~~~~--------~~l~~~~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~-~~~  330 (508)
T TIGR02262       272 ------------LPAEDQ--------VRLRLCTSAGEALPAEVGQRWQARFGVDIVDGIGSTEMLHIFLSNLPGDV-RYG  330 (508)
T ss_pred             ------------cccccc--------ccceeEEEcCCCCCHHHHHHHHHHhCCchhhCccccccCceeecCCccCC-CCC
Confidence                        000001        37999999999999999999999999999999999999876655433322 237


Q ss_pred             ccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccccCCccccCcEEEEcCCCC
Q 010536          437 TVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQPMEL  508 (508)
Q Consensus       437 s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDlg~~d~dG~  508 (508)
                      ++|+|+++++++|+| +++..++.  |+.|||+++|+.++.||+++++.+.+.|.++||+|||+|+++++|+
T Consensus       331 ~~G~~~~g~~v~i~d-~~~~~~~~--g~~Gel~i~~~~~~~gY~~~~~~~~~~~~~~~~~TGD~~~~~~~g~  399 (508)
T TIGR02262       331 TSGKPVPGYRLRLVG-DGGQDVAA--GEPGELLISGPSSATMYWNNRAKTRDTFQGEWTRSGDKYVRNDDGS  399 (508)
T ss_pred             CcCCCCCCcEEEEEC-CCCCCCCC--CCeeEEEEecCccccccCCCHHHhHhhhhcCceeccceEEEcCCcc
Confidence            899999999999999 77766654  4899999999999999999999999889999999999999999874

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.

>PRK06164 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.5e-48  Score=407.01  Aligned_cols=400  Identities=19%  Similarity=0.231  Sum_probs=310.0

Q ss_pred             CCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHH
Q 010536           40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM  119 (508)
Q Consensus        40 ~~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~  119 (508)
                      +...++.++|.+.++.+|+++|+++.   +      +.+||+||.+++.++|.+|.+.|+++||+|+++++|++++++++
T Consensus         7 ~~~~~l~~~l~~~a~~~p~~~a~~~~---~------~~~Ty~~L~~~~~~~a~~L~~~g~~~g~~V~i~~~n~~~~~~~~   77 (540)
T PRK06164          7 PRADTLASLLDAHARARPDAVALIDE---D------RPLSRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLF   77 (540)
T ss_pred             cCCCCHHHHHHHHHHhCCCCeEEecC---C------CcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcHHHHHHH
Confidence            45578999999999999999999854   2      47999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChh-----hHhhcCccCCCCccEEEEecCCCchhhhhhhhc
Q 010536          120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP-----SILSCLPRCCLYLKTIVSFANVSSSQKKEAEEL  194 (508)
Q Consensus       120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (508)
                      +||+++|++++|+++..+.+++.++++.++++++|++.+...     .+..........++.++.++.......      
T Consensus        78 la~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  151 (540)
T PRK06164         78 LACARLGATVIAVNTRYRSHEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDALPPLRAIAVVDDAADATP------  151 (540)
T ss_pred             HHHHHhCcEEEecCCCCCcHHHHHHHHhcCccEEEEccccccccHHHHhhcccccccCCcceEEEeccCcccCC------
Confidence            999999999999999999999999999999999999876421     121112112233445555441111000      


Q ss_pred             CceeeeHHHHHhcC-CCC---CCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEE
Q 010536          195 GVSCFSWEEFLQLG-TLD---CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYF  270 (508)
Q Consensus       195 ~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l  270 (508)
                      ......+.+..... ...   ........+++++++|||||||.||+|.++|.++...+..+...+     .+..+++++
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~l  226 (540)
T PRK06164        152 APAPGARVQLFALPDPAPPAAAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAY-----GYDPGAVLL  226 (540)
T ss_pred             CCCcccccccccccccCCcccccccCCCCCceEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhc-----CCCCCCEEE
Confidence            00000111111111 000   011223468899999999999999999999999999988877766     677899999


Q ss_pred             EecChHHHHHHHHHHHHHHcCcEEEEecC-CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHH
Q 010536          271 SFLPLAHIYDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAY  349 (508)
Q Consensus       271 ~~~pl~~~~g~~~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  349 (508)
                      +.+|++|.+|+...+.++..|+++++.+. ++..+++.++++++|+++++|+++..+++...                  
T Consensus       227 ~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~l~~l~~~~~------------------  288 (540)
T PRK06164        227 AALPFCGVFGFSTLLGALAGGAPLVCEPVFDAARTARALRRHRVTHTFGNDEMLRRILDTAG------------------  288 (540)
T ss_pred             EcCCchhHHHHHHHHHHHhcCceEEecCCCCHHHHHHHHHHhCCeeecCCHHHHHHHHHhhc------------------
Confidence            99999999999888899999999988874 89999999999999999999999999865300                  


Q ss_pred             HHHhhhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEec-CCCCHHHHHHHHHhcCCceeeecccccCCcceeecc
Q 010536          350 NYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGA-APLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSL  428 (508)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG-~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~  428 (508)
                                          ...++        ++++.+.++| .+...++.+++.+. +..+++.||+||++.+++...
T Consensus       289 --------------------~~~~~--------~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~  339 (540)
T PRK06164        289 --------------------ERADF--------PSARLFGFASFAPALGELAALARAR-GVPLTGLYGSSEVQALVALQP  339 (540)
T ss_pred             --------------------ccCCC--------cceeeeeeccCCcchHHHHHHHhhc-CCceecceeeccccceeeccC
Confidence                                00111        2778776665 55667777777765 899999999999987766544


Q ss_pred             CCC--CcccCcccccc-CCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccc-cCCccccCcEEEEc
Q 010536          429 ADV--FNMIGTVGVPM-TTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGDIGEWQ  504 (508)
Q Consensus       429 ~~~--~~~~~s~G~p~-~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~-~~gw~~TGDlg~~d  504 (508)
                      ...  .....+.|.|+ ++++++|+|.++++.+  ..|+.|||+|+|++++.||+++++.+.+.| .+|||+|||+|++|
T Consensus       340 ~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~--~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~  417 (540)
T PRK06164        340 ATDPVSVRIEGGGRPASPEARVRARDPQDGALL--PDGESGEIEIRAPSLMRGYLDNPDATARALTDDGYFRTGDLGYTR  417 (540)
T ss_pred             CCCCCcceeccCccccCCCeEEEEecCCCCcCC--CCCCeeEEEEecccccccccCCchhhhhcccCCCceecCCeEEEc
Confidence            322  12224668875 8999999994344444  455899999999999999999999999888 68999999999999


Q ss_pred             CCCC
Q 010536          505 PMEL  508 (508)
Q Consensus       505 ~dG~  508 (508)
                      +||+
T Consensus       418 ~~g~  421 (540)
T PRK06164        418 GDGQ  421 (540)
T ss_pred             CCce
Confidence            9984

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=2e-49  Score=483.67  Aligned_cols=379  Identities=20%  Similarity=0.238  Sum_probs=316.6

Q ss_pred             CCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHH
Q 010536           40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM  119 (508)
Q Consensus        40 ~~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~  119 (508)
                      ....++.++|.++++++|+++|+++.   +      +.+||+||.++++++|+.|.+.|+++|++|+++++|++++++++
T Consensus      3092 ~~~~~~~~l~~~~a~~~p~~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~vv~~ 3162 (3956)
T PRK12467       3092 PSERLVHQLIEAQVARTPEAPALVFG---D------QQLSYAELNRRANRLAHRLIAIGVGPDVLVGVAVERSVEMIVAL 3162 (3956)
T ss_pred             CccccHHHHHHHHHHhCCCcceEeeC---C------cccCHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeCCCHHHHHHH
Confidence            34479999999999999999999876   4      46999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCceee
Q 010536          120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCF  199 (508)
Q Consensus       120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (508)
                      |||+++|++++||+|.++.+++.++++.++++++|++......+....      ...++.++....              
T Consensus      3163 lavl~aGa~~vpld~~~p~~rl~~il~~~~~~~vlt~~~~~~~~~~~~------~~~~~~~~~~~~-------------- 3222 (3956)
T PRK12467       3163 LAVLKAGGAYVPLDPEYPRERLAYMIEDSGVKLLLTQAHLLEQLPAPA------GDTALTLDRLDL-------------- 3222 (3956)
T ss_pred             HHHHhhCcEeecCCCCChHHHHHHHHhCCCCcEEEechhhhhhccccc------CCceeeecchhh--------------
Confidence            999999999999999999999999999999999999876544331110      011122211100              


Q ss_pred             eHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHH
Q 010536          200 SWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIY  279 (508)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~  279 (508)
                            .............++++++|+|||||||.||||+++|+++.+.+......+     .+..+|++++.+|++|..
T Consensus      3223 ------~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~~fd~ 3291 (3956)
T PRK12467       3223 ------NGYSENNPSTRVMGENLAYVIYTSGSTGKPKGVGVRHGALANHLCWIAEAY-----ELDANDRVLLFMSFSFDG 3291 (3956)
T ss_pred             ------cccCCCCCcccCCCCceEEEEEccCCCCCcceeeehhHHHHHHHHHHHHhc-----CCCcCCEEEEecCccHhH
Confidence                  001111222345678999999999999999999999999999999888777     788999999999999999


Q ss_pred             HHHHHHHHHHcCcEEEEecC---CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhh
Q 010536          280 DQIIETHCIHKGCSIGFWRG---DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNM  356 (508)
Q Consensus       280 g~~~~~~~l~~G~~~~~~~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (508)
                      +...++.+|+.|+++++.+.   ++..+++.++++++|++.++|++++.+++...                         
T Consensus      3292 ~~~~~~~~L~~G~~l~i~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~------------------------- 3346 (3956)
T PRK12467       3292 AQERFLWTLICGGCLVVRDNDLWDPEELWQAIHAHRISIACFPPAYLQQFAEDAG------------------------- 3346 (3956)
T ss_pred             HHHHHHHHHhCCCEEEECCcccCCHHHHHHHHHHcCCEEEEcCHHHHHHHHhccc-------------------------
Confidence            98889999999999999863   88999999999999999999999998864210                         


Q ss_pred             hcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhc-CCceeeecccccCCcceeeccCCCC---
Q 010536          357 KKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESCSGCFTSLADVF---  432 (508)
Q Consensus       357 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~~~---  432 (508)
                                    ..++        ++||.+++||+++++++.+.|.+.+ +..++|.||+||+++.++.......   
T Consensus      3347 --------------~~~~--------~~lr~~~~gGe~~~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~ 3404 (3956)
T PRK12467       3347 --------------GADC--------ASLDIYVFGGEAVPPAAFEQVKRKLKPRGLTNGYGPTEAVVTVTLWKCGGDAVC 3404 (3956)
T ss_pred             --------------ccCC--------CCceEEEEecCCCCHHHHHHHHHhCCCCEEEeCcccchhEeeeEEEeccccccc
Confidence                          0011        3799999999999999999998877 5789999999999887765433221   


Q ss_pred             -cccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccc-cC-------CccccCcEEEE
Q 010536          433 -NMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VD-------GWFHTGDIGEW  503 (508)
Q Consensus       433 -~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~-~~-------gw~~TGDlg~~  503 (508)
                       ....++|+|++|++++|+| ++++.+|.|  +.|||+|+|+.+++||+++|+.|.++| .+       +||+|||+|++
T Consensus      3405 ~~~~~~iG~p~~~~~~~v~d-~~~~~vp~G--~~GEL~i~G~~v~~GY~~~~~~T~~~F~~~p~~~~g~r~yrTGDl~~~ 3481 (3956)
T PRK12467       3405 EAPYAPIGRPVAGRSIYVLD-GQLNPVPVG--VAGELYIGGVGLARGYHQRPSLTAERFVADPFSGSGGRLYRTGDLARY 3481 (3956)
T ss_pred             CCCCCCCccccCCCEEEEEC-CCCCCCCCC--CCceEEEcchhhhhhccCCcccchhhccCCCCCCCCceeeccchhhee
Confidence             1236899999999999999 888777655  999999999999999999999999999 33       37999999999


Q ss_pred             cCCCC
Q 010536          504 QPMEL  508 (508)
Q Consensus       504 d~dG~  508 (508)
                      ++||+
T Consensus      3482 ~~dG~ 3486 (3956)
T PRK12467       3482 RADGV 3486 (3956)
T ss_pred             cCCCc
Confidence            99995

>PRK06018 putative acyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.6e-48  Score=404.98  Aligned_cols=403  Identities=20%  Similarity=0.268  Sum_probs=314.9

Q ss_pred             CCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHH
Q 010536           41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME  120 (508)
Q Consensus        41 ~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~l  120 (508)
                      -..++.++|+++++++|++++++..   .  .+.++.+||+||.++++++|++|.+.|+++||+|+++++|+++++++++
T Consensus         8 ~~~~~~~~~~~~a~~~~~~~~~~~~---~--~~~~~~~Ty~el~~~v~~la~~L~~~g~~~gd~v~i~~~~~~~~~~~~l   82 (542)
T PRK06018          8 WPLLCHRIIDHAARIHGNREVVTRS---V--EGPIVRTTYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAWY   82 (542)
T ss_pred             CCCCHHHHHHHHHHhCCCceEEEee---c--cCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHH
Confidence            3469999999999999999999743   1  1234789999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCceeee
Q 010536          121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFS  200 (508)
Q Consensus       121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (508)
                      ||+++|++++|++|..+.+++..+++.+++++++++......+.+.... ...++.++...+......    ........
T Consensus        83 a~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----~~~~~~~~  157 (542)
T PRK06018         83 GIMGIGAICHTVNPRLFPEQIAWIINHAEDRVVITDLTFVPILEKIADK-LPSVERYVVLTDAAHMPQ----TTLKNAVA  157 (542)
T ss_pred             HHHhcCeEeeccccccCHHHHHHHHhccCCCEEEEccccHHHHHHHHhh-CCCccEEEEecccccccc----cCcccccc
Confidence            9999999999999999999999999999999999998877666443322 234455554433211000    00012335


Q ss_pred             HHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHH-HHH-hhhhhhhhhccccCCCCcEEEEecChHHH
Q 010536          201 WEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIV-AEV-LSVDQMFVVTGKVCSEEDTYFSFLPLAHI  278 (508)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~-~~~-~~~~~~~~~~~~~~~~~~~~l~~~pl~~~  278 (508)
                      +++++..............+++++++|||||||.||+|.+||++.+ ... ......+     .+..+|+++...|++|.
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~-----~~~~~d~~~~~~p~~h~  232 (542)
T PRK06018        158 YEEWIAEADGDFAWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDAL-----GTSAADTMLPVVPLFHA  232 (542)
T ss_pred             HHHHhccCCcccCcccCCccceeeEEecCCCCCCCcEEEEechhHHHHHHHHhhhhhc-----CCCCCCEEEEecCHHHH
Confidence            6666554422222334566789999999999999999999999743 222 2222222     57788999999999999


Q ss_pred             HHHHHHHHHHHcCcEEEEec--CCHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhh
Q 010536          279 YDQIIETHCIHKGCSIGFWR--GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNM  356 (508)
Q Consensus       279 ~g~~~~~~~l~~G~~~~~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (508)
                      +++...+.++..|+++++..  .++..+++.++++++|++.++|+++..+++.....                       
T Consensus       233 ~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~-----------------------  289 (542)
T PRK06018        233 NSWGIAFSAPSMGTKLVMPGAKLDGASVYELLDTEKVTFTAGVPTVWLMLLQYMEKE-----------------------  289 (542)
T ss_pred             hhhHHHHhhhhcCceEEccCcCCCHHHHHHHHHhcCCceeecCcHHHHHHHhccccc-----------------------
Confidence            99887778899999998865  38899999999999999999999999886532110                       


Q ss_pred             hcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCcceeeccCCC-----
Q 010536          357 KKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADV-----  431 (508)
Q Consensus       357 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~-----  431 (508)
                                    ..++        +++|.+++||+++++++.++|++ ++.++++.||+||++.+++......     
T Consensus       290 --------------~~~~--------~~lr~~~~~G~~l~~~~~~~~~~-~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~  346 (542)
T PRK06018        290 --------------GLKL--------PHLKMVVCGGSAMPRSMIKAFED-MGVEVRHAWGMTEMSPLGTLAALKPPFSKL  346 (542)
T ss_pred             --------------CCCc--------ccceEEEEcCCCCCHHHHHHHHH-hCCCeEeeecccccCcccccccCccccccC
Confidence                          0111        27999999999999999999999 8999999999999987665432111     


Q ss_pred             -----CcccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccc-cCCccccCcEEEEcC
Q 010536          432 -----FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGDIGEWQP  505 (508)
Q Consensus       432 -----~~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~-~~gw~~TGDlg~~d~  505 (508)
                           .....++|+|.++++++|+| +++..++.+.+..|||+++|++++.||+++..   +.+ .+|||+|||+|++|+
T Consensus       347 ~~~~~~~~~~~~G~~~~g~~i~v~d-~~~~~~~~~~~~~Gel~i~g~~~~~gy~~~~~---~~~~~~~~~~TGDl~~~~~  422 (542)
T PRK06018        347 PGDARLDVLQKQGYPPFGVEMKITD-DAGKELPWDGKTFGRLKVRGPAVAAAYYRVDG---EILDDDGFFDTGDVATIDA  422 (542)
T ss_pred             CchhhhhccccCCCCCCCcEEEEEC-CCCCCCCCCCCceeEEEEecCCcchhhhcCcc---cEecCCcEEEcCCEEEEcC
Confidence                 01125789999999999999 88887776544689999999999999998432   223 579999999999999


Q ss_pred             CCC
Q 010536          506 MEL  508 (508)
Q Consensus       506 dG~  508 (508)
                      ||+
T Consensus       423 ~g~  425 (542)
T PRK06018        423 YGY  425 (542)
T ss_pred             Ccc
Confidence            985

>PRK06710 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.5e-48  Score=407.21  Aligned_cols=407  Identities=25%  Similarity=0.409  Sum_probs=306.7

Q ss_pred             CCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHH
Q 010536           41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME  120 (508)
Q Consensus        41 ~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~l  120 (508)
                      ..+++.+++...++++|+++|+++.   +      +.+||+||.+++.++|.+|.+.|+++||+|+++++|+++++++++
T Consensus        22 ~~~~~~~~~~~~a~~~p~~~a~~~~---~------~~~ty~eL~~~~~~la~~L~~~gv~~gd~V~i~~~~~~~~~~~~l   92 (563)
T PRK06710         22 DIQPLHKYVEQMASRYPEKKALHFL---G------KDITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYY   92 (563)
T ss_pred             CcccHHHHHHHHHHHCCCceEEEec---C------eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHH
Confidence            4478999999999999999999875   3      579999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCC--chhhh----hh---
Q 010536          121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVS--SSQKK----EA---  191 (508)
Q Consensus       121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~----~~---  191 (508)
                      ||+++|++++|++|..+.+++..+++.++++++++++.....+......  .....++......  .....    ..   
T Consensus        93 A~~~~G~~~vpi~p~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (563)
T PRK06710         93 GTLLAGGIVVQTNPLYTERELEYQLHDSGAKVILCLDLVFPRVTNVQSA--TKIEHVIVTRIADFLPFPKNLLYPFVQKK  170 (563)
T ss_pred             HHHHcCeEEeccCcccCHHHHHHHHhccCCeEEEEeccchhhhhccchh--hccceeEEeccccccccccccccchhhcc
Confidence            9999999999999999999999999999999999987654433222111  1112222211000  00000    00   


Q ss_pred             -h------hcCceeeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCC
Q 010536          192 -E------ELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCS  264 (508)
Q Consensus       192 -~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~  264 (508)
                       .      ........|+.+...............+++++++|||||||.||+|.++|+++..........+   .....
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~---~~~~~  247 (563)
T PRK06710        171 QSNLVVKVSESETIHLWNSVEKEVNTGVEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWL---YNCKE  247 (563)
T ss_pred             cccccccccccchhhhhhhhhhccccccccccCCCCCEEEEEcCCCCCCCCceEEEehHHHHHHHHHHHhhc---cCCCC
Confidence             0      0000001122221111111111112357899999999999999999999999876543322221   01123


Q ss_pred             CCcEEEEecChHHHHHHHH-HHHHHHcCcEEEEecC-CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHH
Q 010536          265 EEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSK  342 (508)
Q Consensus       265 ~~~~~l~~~pl~~~~g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~  342 (508)
                      .++++++.+|++|.+++.. .+.+++.|+++++.+. ++..+++.++++++|++.++|+++..+++..            
T Consensus       248 ~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~------------  315 (563)
T PRK06710        248 GEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAPTIYIALLNSP------------  315 (563)
T ss_pred             CCceEEEeCchHHHHHHHHHHHHHHHcCCeEEEcCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHcCC------------
Confidence            4568899999999999874 5568889999988764 8999999999999999999999999875410            


Q ss_pred             HHHHHHHHHHhhhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCc
Q 010536          343 KLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCS  422 (508)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~  422 (508)
                                               .....+++        ++|.+++||+++++++.+++.+.++..+++.||+||++.
T Consensus       316 -------------------------~~~~~~~~--------~lr~v~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~  362 (563)
T PRK06710        316 -------------------------LLKEYDIS--------SIRACISGSAPLPVEVQEKFETVTGGKLVEGYGLTESSP  362 (563)
T ss_pred             -------------------------ccccCChh--------hhhheeeCCCcCCHHHHHHHHHhhCCCEecccccccCcc
Confidence                                     01111222        789999999999999999999988999999999999987


Q ss_pred             ceeeccCCCCcccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccccCCccccCcEEE
Q 010536          423 GCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGE  502 (508)
Q Consensus       423 ~~~~~~~~~~~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDlg~  502 (508)
                      ++..........++++|+|++++.++|++.+++..++  .|+.|||+++|+.++.||+++++.+...|.+|||+|||+|+
T Consensus       363 ~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~--~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGD~~~  440 (563)
T PRK06710        363 VTHSNFLWEKRVPGSIGVPWPDTEAMIMSLETGEALP--PGEIGEIVVKGPQIMKGYWNKPEETAAVLQDGWLHTGDVGY  440 (563)
T ss_pred             ccccCcccccccCCccCCCCCCCeEEEEECCCCccCC--CCCceEEEEecCccchhhhCChHHHhhhcccCcccccceEE
Confidence            6544333233334789999999999999944444444  45899999999999999999999999888999999999999


Q ss_pred             EcCCCC
Q 010536          503 WQPMEL  508 (508)
Q Consensus       503 ~d~dG~  508 (508)
                      +|++|+
T Consensus       441 ~~~~g~  446 (563)
T PRK06710        441 MDEDGF  446 (563)
T ss_pred             EcCCCc
Confidence            999984

>PRK10252 entF enterobactin synthase subunit F; Provisional

Probab=100.00  E-value=6.6e-49  Score=449.08  Aligned_cols=379  Identities=20%  Similarity=0.283  Sum_probs=313.3

Q ss_pred             CCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHHH
Q 010536           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (508)
Q Consensus        42 ~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~lA  121 (508)
                      ..++.++|.++++++|+++|+++.   +      +.+||+||.++++++|++|.+.|+++||+|+++++++++++++++|
T Consensus       457 ~~~l~~~~~~~~~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~la~~L~~~g~~~g~~V~l~~~~~~~~i~~~la  527 (1296)
T PRK10252        457 ETTLSALVAQQAAKTPDAPALADA---R------YQFSYREMREQVVALANLLRERGVKPGDSVAVALPRSVFLTLALHA  527 (1296)
T ss_pred             cCCHHHHHHHHHHhCCCCeEEEcC---C------CcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence            468999999999999999999865   3      4699999999999999999999999999999999999999999999


Q ss_pred             HHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCceeeeH
Q 010536          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW  201 (508)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (508)
                      |+++|++++||+|..+.+++.++++.+++++++++......+.+.     ..+ .++.+                     
T Consensus       528 ~~~~G~~~vpld~~~p~~~~~~~l~~~~~~~~i~~~~~~~~~~~~-----~~~-~~~~~---------------------  580 (1296)
T PRK10252        528 IVEAGAAWLPLDTGYPDDRLKMMLEDARPSLLITTADQLPRFADV-----PDL-TSLCY---------------------  580 (1296)
T ss_pred             HHHhCCEEEecCccCHHHHHHHHHHhCCCCEEEECcchhhhcccC-----CCc-eeeec---------------------
Confidence            999999999999999999999999999999999987655433211     000 01111                     


Q ss_pred             HHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHH
Q 010536          202 EEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ  281 (508)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~  281 (508)
                      +...... .........++++++|+|||||||.||||+++|+++.+.+......+     .+..+|++++.+|++|..++
T Consensus       581 ~~~~~~~-~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~~fd~~~  654 (1296)
T PRK10252        581 NAPLAPQ-GAAPLQLSQPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRLLWMQNHY-----PLTADDVVLQKTPCSFDVSV  654 (1296)
T ss_pred             ccccccc-cCCCCCCCCCCCeEEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhc-----CCCCCCEEEEeCCcchhhhH
Confidence            0000000 01111223578899999999999999999999999999998887777     78899999999999999998


Q ss_pred             HHHHHHHHcCcEEEEecC----CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhh
Q 010536          282 IIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMK  357 (508)
Q Consensus       282 ~~~~~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (508)
                      ..++.+++.|+++++.+.    ++..+++.++++++|++.++|++++.+++.......                      
T Consensus       655 ~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~~----------------------  712 (1296)
T PRK10252        655 WEFFWPFIAGAKLVMAEPEAHRDPLAMQQFFAEYGVTTTHFVPSMLAAFVASLTPEGA----------------------  712 (1296)
T ss_pred             HHHHHHHhCCCEEEECChhccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhhccccc----------------------
Confidence            888999999999999752    889999999999999999999999987653211000                      


Q ss_pred             cCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCcceeeccCCC------
Q 010536          358 KGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADV------  431 (508)
Q Consensus       358 ~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~------  431 (508)
                                   ...+        .++|.+++||+++++++.+.|.+.++..+++.||+||++..++......      
T Consensus       713 -------------~~~~--------~~lr~i~~gGe~l~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~  771 (1296)
T PRK10252        713 -------------RQSC--------ASLRQVFCSGEALPADLCREWQQLTGAPLHNLYGPTEAAVDVSWYPAFGEELAAV  771 (1296)
T ss_pred             -------------cccC--------CCccEEEEecCCCCHHHHHHHHhcCCCEEEeCCCcchhhheeeeeeccccccccc
Confidence                         0000        2799999999999999999999988999999999999987766543322      


Q ss_pred             CcccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCccccccccc-------CCccccCcEEEEc
Q 010536          432 FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV-------DGWFHTGDIGEWQ  504 (508)
Q Consensus       432 ~~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~~-------~gw~~TGDlg~~d  504 (508)
                      .....++|+|+++++++|+| ++++.++.|  +.|||+|+|+.++.||+++++.+.+.|.       ++||+|||+|+++
T Consensus       772 ~~~~~~iG~p~~~~~~~i~d-~~~~~~~~g--~~Gel~i~g~~~~~GY~~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~  848 (1296)
T PRK10252        772 RGSSVPIGYPVWNTGLRILD-ARMRPVPPG--VAGDLYLTGIQLAQGYLGRPDLTASRFIADPFAPGERMYRTGDVARWL  848 (1296)
T ss_pred             CCCCCCcccccCCCEEEEEC-CCCCCCCCC--CceEEEecccccchhhCCCcccchhhcccCCCCCCCEEEecCceEEEc
Confidence            12236799999999999999 888777655  8999999999999999999999998882       2499999999999


Q ss_pred             CCCC
Q 010536          505 PMEL  508 (508)
Q Consensus       505 ~dG~  508 (508)
                      +||+
T Consensus       849 ~~G~  852 (1296)
T PRK10252        849 DDGA  852 (1296)
T ss_pred             CCCc
Confidence            9985

>PRK09088 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.3e-48  Score=402.55  Aligned_cols=366  Identities=23%  Similarity=0.337  Sum_probs=293.3

Q ss_pred             HHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHHHHHHcCCEE
Q 010536           50 CDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITY  129 (508)
Q Consensus        50 ~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~lA~~~~G~~~  129 (508)
                      +.+++.+|+++|+.+.   ...    +.+||.||.++++++|.+|.+.|+++||+|+++++|+++++++++||+++|+++
T Consensus         2 ~~~a~~~p~~~a~~~~---~~~----~~~ty~~l~~~v~~~a~~l~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~   74 (488)
T PRK09088          2 AFHARLQPQRLAAVDL---ALG----RRWTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIY   74 (488)
T ss_pred             chhhhhCCCceEEEec---CCC----cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEE
Confidence            4577889999999763   221    579999999999999999999999999999999999999999999999999999


Q ss_pred             EeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCceeeeHHHHHhcC-
Q 010536          130 VPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLG-  208 (508)
Q Consensus       130 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  208 (508)
                      +|+++..+.+++..+++.++++++|+++.......           ..                     ..++++.... 
T Consensus        75 v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~-----------~~---------------------~~~~~~~~~~~  122 (488)
T PRK09088         75 VPLNWRLSASELDALLQDAEPRLLLGDDAVAAGRT-----------DV---------------------EDLAAFIASAD  122 (488)
T ss_pred             EeeCccCCHHHHHHHHHhCCCCEEEEcchhhcccc-----------cc---------------------cchhhhhhhcc
Confidence            99999999999999999999999999864322100           00                     0111111110 


Q ss_pred             -CCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHH-HHH
Q 010536          209 -TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII-ETH  286 (508)
Q Consensus       209 -~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~-~~~  286 (508)
                       ...........+++++++|||||||.||+|.++|+++...+..+....     ....++++++.+|++|.+++.. .+.
T Consensus       123 ~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~~~~g~~~~~~~  197 (488)
T PRK09088        123 ALEPADTPSIPPERVSLILFTSGTSGQPKGVMLSERNLQQTAHNFGVLG-----RVDAHSSFLCDAPMFHIIGLITSVRP  197 (488)
T ss_pred             ccccccCCCCCCCCceEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhh-----CCCCCcEEEEecchHHHHHHHHHHHH
Confidence             001112234567899999999999999999999999988777766544     5678999999999999999885 567


Q ss_pred             HHHcCcEEEEecC-CHHhHHHHhh--hhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhcCCCCC
Q 010536          287 CIHKGCSIGFWRG-DVRYLMEDIQ--ELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQN  363 (508)
Q Consensus       287 ~l~~G~~~~~~~~-~~~~~~~~i~--~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (508)
                      ++..|+++++.+. ++..++..+.  ++++|+++++|++++.+.+..                                 
T Consensus       198 ~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~P~~~~~l~~~~---------------------------------  244 (488)
T PRK09088        198 VLAVGGSILVSNGFEPKRTLGRLGDPALGITHYFCVPQMAQAFRAQP---------------------------------  244 (488)
T ss_pred             HHhcCCEEEEcCCCCHHHHHHHHHhhccCCcEEeeHHHHHHHHHhCc---------------------------------
Confidence            8888999988764 7888888886  489999999999998875310                                 


Q ss_pred             cchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCcceeeccCC--CCcccCccccc
Q 010536          364 KAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLAD--VFNMIGTVGVP  441 (508)
Q Consensus       364 ~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~--~~~~~~s~G~p  441 (508)
                          ..+..++        +++|.+++||++++.+..+.+.+. |.++++.||+||++.+.......  .....+++|+|
T Consensus       245 ----~~~~~~~--------~~l~~~~~gG~~~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~~  311 (488)
T PRK09088        245 ----GFDAAAL--------RHLTALFTGGAPHAAEDILGWLDD-GIPMVDGFGMSEAGTVFGMSVDCDVIRAKAGAAGIP  311 (488)
T ss_pred             ----CcCcccc--------ccceEEEecCCCCCHHHHHHHHHh-CCceeeeecccccccccccCCCcccccccCCccccC
Confidence                0011111        279999999999999988888765 89999999999998765432211  12344789999


Q ss_pred             cCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccc-cCCccccCcEEEEcCCCC
Q 010536          442 MTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGDIGEWQPMEL  508 (508)
Q Consensus       442 ~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~-~~gw~~TGDlg~~d~dG~  508 (508)
                      +|+++++|+| +++..++.  |+.|||+|+|++++.||+++++.+.+.| .+|||+|||+|++|++|+
T Consensus       312 ~~~~~~~i~d-~~~~~~~~--g~~Gel~v~~~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~  376 (488)
T PRK09088        312 TPTVQTRVVD-DQGNDCPA--GVPGELLLRGPNLSPGYWRRPQATARAFTGDGWFRTGDIARRDADGF  376 (488)
T ss_pred             CCCcEEEEEC-CCCCCCcC--CCceEEEEECCccchhhcCChhhhhhhhcCCCCeeecceEEEcCCCc
Confidence            9999999999 77766554  4899999999999999999999988877 589999999999999985

>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional

Probab=100.00  E-value=2.9e-48  Score=406.52  Aligned_cols=407  Identities=23%  Similarity=0.365  Sum_probs=313.2

Q ss_pred             CCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHH-hCCCCCCCEEEEEcCCcHhHHHHHH
Q 010536           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMR-SRGVNPGDRCGIYGSNCPEWIIAME  120 (508)
Q Consensus        42 ~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~-~~gv~~gd~Vai~~~n~~~~~~~~l  120 (508)
                      ..++.++|.++++++|+++|+++.   +      +.+||+||.++++++|+.|. +.|+++||+|+++++|+++++++++
T Consensus        24 ~~~~~~~l~~~~~~~~~~~a~~~~---~------~~~Ty~el~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~l   94 (560)
T PRK08751         24 FRTVAEVFATSVAKFADRPAYHSF---G------KTITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATF   94 (560)
T ss_pred             CCcHHHHHHHHHHhCCCCceEEEC---C------ceeeHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHH
Confidence            468999999999999999999864   3      57999999999999999997 6899999999999999999999999


Q ss_pred             HHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCch--h---------hh
Q 010536          121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSS--Q---------KK  189 (508)
Q Consensus       121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---------~~  189 (508)
                      ||+++|++++|++|.++.+++..+++.++++++++++.....+.......  ....++........  .         ..
T Consensus        95 A~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (560)
T PRK08751         95 GVLRAGLTVVNVNPLYTPRELKHQLIDSGASVLVVIDNFGTTVQQVIADT--PVKQVITTGLGDMLGFPKAALVNFVVKY  172 (560)
T ss_pred             HHHHhCeEEeccCccCCHHHHHHHHHhcCCeEEEEcchhHHHHHHHhhCC--CccEEEEechhhhcccccchhhhhhhhh
Confidence            99999999999999999999999999999999999887665544433221  12233322100000  0         00


Q ss_pred             hh---hh-cCceeeeHHHHHhcC-CCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCC
Q 010536          190 EA---EE-LGVSCFSWEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCS  264 (508)
Q Consensus       190 ~~---~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~  264 (508)
                      ..   .. .......+++..... ...........+++++++|||||||.||+|.++|.++...+......+... ....
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~-~~~~  251 (560)
T PRK08751        173 VKKLVPEYRINGAIRFREALALGRKHSMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGT-GKLE  251 (560)
T ss_pred             hhccccccCCCccccHHHHHhccCCCCCCCCCCCcccEEEEEcCCCCCCCCCEEEEccHHHHHHHHHHHHhhccc-cccC
Confidence            00   00 000112344444332 111223345678999999999999999999999999988777654443111 1123


Q ss_pred             C-CcEEEEecChHHHHHHHH-HHHHHHcCcEEEEec--CCHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChh
Q 010536          265 E-EDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWR--GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGAL  340 (508)
Q Consensus       265 ~-~~~~l~~~pl~~~~g~~~-~~~~l~~G~~~~~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~  340 (508)
                      . .+.+++.+|++|.+++.. .+.++..|+.+++..  .++..+++.++++++|++.++|.++..+.+.           
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~-----------  320 (560)
T PRK08751        252 EGCEVVITALPLYHIFALTANGLVFMKIGGCNHLISNPRDMPGFVKELKKTRFTAFTGVNTLFNGLLNT-----------  320 (560)
T ss_pred             CCCceEEEecChHHHHHHHHhhhhHhhccceEEEecCcCCHHHHHHHHHhcceeEecChHHHHHHHHcC-----------
Confidence            3 467788899999999864 456667777766654  3889999999999999999999999887641           


Q ss_pred             HHHHHHHHHHHHhhhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccC
Q 010536          341 SKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTES  420 (508)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~  420 (508)
                                                +..+..+++        ++|.+++||+++++.+.+.+++.+|..+++.||+||+
T Consensus       321 --------------------------~~~~~~~l~--------~lr~v~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~  366 (560)
T PRK08751        321 --------------------------PGFDQIDFS--------SLKMTLGGGMAVQRSVAERWKQVTGLTLVEAYGLTET  366 (560)
T ss_pred             --------------------------cCcCCcchh--------hheeeeeCCCCCCHHHHHHHHHHhCCeEEEeeccccC
Confidence                                      111222333        7899999999999999999999889999999999999


Q ss_pred             CcceeeccCCCCcccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccc-cCCccccCc
Q 010536          421 CSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGD  499 (508)
Q Consensus       421 ~~~~~~~~~~~~~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~-~~gw~~TGD  499 (508)
                      +..++....+.....+++|+|+++++++|+| +++..++.+  +.|||+++|+.++.||+++++.+.+.| .+|||+|||
T Consensus       367 ~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d-~~~~~~~~g--~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD  443 (560)
T PRK08751        367 SPAACINPLTLKEYNGSIGLPIPSTDACIKD-DAGTVLAIG--EIGELCIKGPQVMKGYWKRPEETAKVMDADGWLHTGD  443 (560)
T ss_pred             CCceecccccccccCCCcCccCCCceEEEEC-CCCCCCCCC--CceEEEEecCccchhhcCChhhhhhccccCCCccccc
Confidence            8876655433333447899999999999999 777766554  899999999999999999999988887 679999999


Q ss_pred             EEEEcCCCC
Q 010536          500 IGEWQPMEL  508 (508)
Q Consensus       500 lg~~d~dG~  508 (508)
                      +|++|++|+
T Consensus       444 ~~~~~~~g~  452 (560)
T PRK08751        444 IARMDEQGF  452 (560)
T ss_pred             eEEEcCCce
Confidence            999999985

>PRK06178 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.8e-48  Score=406.09  Aligned_cols=409  Identities=21%  Similarity=0.304  Sum_probs=312.1

Q ss_pred             CCCCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHH
Q 010536           38 SPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWII  117 (508)
Q Consensus        38 ~~~~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~  117 (508)
                      .+....++.++|+++++.+|+++|+.+.   +      +.+||.||.+++.++|.+|.+.|+++|++|+++++|++++++
T Consensus        28 ~~~~~~~l~~~l~~~a~~~p~~~al~~~---~------~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~   98 (567)
T PRK06178         28 YPHGERPLTEYLRAWARERPQRPAIIFY---G------HVITYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHI   98 (567)
T ss_pred             CCcCcccHHHHHHHHHHHCCCceEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCcHHHH
Confidence            3456678999999999999999999865   3      479999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhh--hhhh--h
Q 010536          118 AMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQK--KEAE--E  193 (508)
Q Consensus       118 ~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~  193 (508)
                      +++||+++|++++|++|..+..++.++++.++++++++++...+.+.+.....  ..+.++..........  ....  .
T Consensus        99 ~~lA~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~ii~~~~~~~~l~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~  176 (567)
T PRK06178         99 VFFGILKLGAVHVPVSPLFREHELSYELNDAGAEVLLALDQLAPVVEQVRAET--SLRHVIVTSLADVLPAEPTLPLPDS  176 (567)
T ss_pred             HHHHHHHhCeEEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHhhccC--CcceEEEeccccccccccccccccc
Confidence            99999999999999999999999999999999999999988776655433221  2333333221110000  0000  0


Q ss_pred             ------cCceeeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCc
Q 010536          194 ------LGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEED  267 (508)
Q Consensus       194 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~  267 (508)
                            ....+..+.+................+++++|+|||||||.||+|.+||.++...+.......    .....++
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~----~~~~~~d  252 (567)
T PRK06178        177 LRAPRLAAAGAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVA----VVGGEDS  252 (567)
T ss_pred             cccccccccccccHHHHhhccccccccCCCCCCCeEEEEeCCCCCCCCceEEeccHHHHHHHHHHHHHh----ccCCCCc
Confidence                  000111111111111111122335678999999999999999999999999987765543321    2567889


Q ss_pred             EEEEecChHHHHHHH-HHHHHHHcCcEEEEecC-CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHH
Q 010536          268 TYFSFLPLAHIYDQI-IETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLF  345 (508)
Q Consensus       268 ~~l~~~pl~~~~g~~-~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~  345 (508)
                      ++++.+|++|.+|+. ..+.+++.|+++++.+. ++..++..++++++|.+.++|..+..+++..               
T Consensus       253 ~~l~~~p~~~~~g~~~~~~~~l~~G~~~~l~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~l~~~~---------------  317 (567)
T PRK06178        253 VFLSFLPEFWIAGENFGLLFPLFSGATLVLLARWDAVAFMAAVERYRVTRTVMLVDNAVELMDHP---------------  317 (567)
T ss_pred             EEEEecchHHHHHHHHHHHHHHHcCceEEEeCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCC---------------
Confidence            999999999999986 47778999999999875 8999999999999999999999988775410               


Q ss_pred             HHHHHHHhhhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEE--EecCCCCHHHHHHHHHhcCCceee-ecccccCCc
Q 010536          346 EFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAML--SGAAPLPIHVEEFLRVTSGAPLTQ-GYGLTESCS  422 (508)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~--~gG~~~~~~~~~~~~~~~~~~v~~-~YG~TE~~~  422 (508)
                                            .....+++        +++.+.  ++++.+++++.+.+++.+|..++. .||+||++.
T Consensus       318 ----------------------~~~~~~l~--------~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~YG~tE~~~  367 (567)
T PRK06178        318 ----------------------RFAEYDLS--------SLRQVRVVSFVKKLNPDYRQRWRALTGSVLAEAAWGMTETHT  367 (567)
T ss_pred             ----------------------CCCCCCcc--------hheeeeeccccccCCHHHHHHHHHHhCCcccccccccccccc
Confidence                                  00111122        455543  446899999999999988877765 799999986


Q ss_pred             ceeeccCC--C----CcccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccccCCccc
Q 010536          423 GCFTSLAD--V----FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFH  496 (508)
Q Consensus       423 ~~~~~~~~--~----~~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~~~gw~~  496 (508)
                      .+......  .    ...++++|+|+||++++|+|.+++..++.  |+.|||+++|++++.||+++++.+.+.|.+|||+
T Consensus       368 ~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~v~d~~~~~~~~~--g~~Gel~v~g~~v~~gY~~~~~~~~~~~~dg~~~  445 (567)
T PRK06178        368 CDTFTAGFQDDDFDLLSQPVFVGLPVPGTEFKICDFETGELLPL--GAEGEIVVRTPSLLKGYWNKPEATAEALRDGWLH  445 (567)
T ss_pred             cceeccccccCccccccCCcccccccCCcEEEEEcCCCCCcCCC--CCceEEEEECCcccccccCChhhhhhcccCCcee
Confidence            65443211  1    12346799999999999999444555554  4899999999999999999999998888899999


Q ss_pred             cCcEEEEcCCCC
Q 010536          497 TGDIGEWQPMEL  508 (508)
Q Consensus       497 TGDlg~~d~dG~  508 (508)
                      |||+|++++||+
T Consensus       446 TGDl~~~~~~g~  457 (567)
T PRK06178        446 TGDIGKIDEQGF  457 (567)
T ss_pred             ecceEEEecCCe
Confidence            999999999884

>PLN02479 acetate-CoA ligase

Probab=100.00  E-value=3.4e-48  Score=405.90  Aligned_cols=407  Identities=23%  Similarity=0.336  Sum_probs=305.8

Q ss_pred             CCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHHHH
Q 010536           43 ESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC  122 (508)
Q Consensus        43 ~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~lA~  122 (508)
                      .+++.++...++.+|+++|+++.   .      +.+||+||.++++++|.+|.+.|+++||+|+++++|+++++++++||
T Consensus        20 ~~~~~~~~~~~~~~p~~~a~~~~---~------~~~ty~eL~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~   90 (567)
T PLN02479         20 LTPLWFLERAAVVHPTRKSVVHG---S------VRYTWAQTYQRCRRLASALAKRSIGPGSTVAVIAPNIPAMYEAHFGV   90 (567)
T ss_pred             cCHHHHHHHHHhhCCCceEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHH
Confidence            46899999999999999999864   3      46999999999999999999999999999999999999999999999


Q ss_pred             HHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCcc------CCCCccEEEEecCCCchhhhhhhhcCc
Q 010536          123 NSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPR------CCLYLKTIVSFANVSSSQKKEAEELGV  196 (508)
Q Consensus       123 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (508)
                      +++|++++|++|.++.+++.++++.++++++|+++............      .......++.+................
T Consensus        91 ~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (567)
T PLN02479         91 PMAGAVVNCVNIRLNAPTIAFLLEHSKSEVVMVDQEFFTLAEEALKILAEKKKSSFKPPLLIVIGDPTCDPKSLQYALGK  170 (567)
T ss_pred             HhCCcEEEEeccccCHHHHHHHHhhcCceEEEEchhhhhHHHHHHHHHhhcccccCCCceEEEecCCcCCcccccccccc
Confidence            99999999999999999999999999999999998765443222110      001112334433211100000000011


Q ss_pred             eeeeHHHHHhcCCCCCC-CCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecCh
Q 010536          197 SCFSWEEFLQLGTLDCE-LPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPL  275 (508)
Q Consensus       197 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl  275 (508)
                      ....+++++........ ......++.++++|||||||.||+|.+||.++..........+     .+..++++++.+|+
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~  245 (567)
T PLN02479        171 GAIEYEKFLETGDPEFAWKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYLMALSNALIW-----GMNEGAVYLWTLPM  245 (567)
T ss_pred             CcccHHHHHhccccccccCCCCCcccceEEEECCCCCCCCcEEEeccHHHHHHHHHHHhhc-----CCCCCCEEEEecch
Confidence            23456666554321111 1122334677899999999999999999999876665544333     56788999999999


Q ss_pred             HHHHHHHHHH-HHHHcCcEEEEecCCHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhh
Q 010536          276 AHIYDQIIET-HCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLG  354 (508)
Q Consensus       276 ~~~~g~~~~~-~~l~~G~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (508)
                      +|.+++...+ ..++.|.++++..+++..+++.++++++|++.++|.+++.+++......                    
T Consensus       246 ~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~--------------------  305 (567)
T PLN02479        246 FHCNGWCFTWTLAALCGTNICLRQVTAKAIYSAIANYGVTHFCAAPVVLNTIVNAPKSET--------------------  305 (567)
T ss_pred             hhhhhHHHHHHHHhhcCceEeccCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhhhhhcc--------------------
Confidence            9999987544 4566777766666799999999999999999999999998865311000                    


Q ss_pred             hhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCcceeeccC-----
Q 010536          355 NMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLA-----  429 (508)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~-----  429 (508)
                                      ..++        ++++.++++|+++++++.+++++. +.++++.||+||+++.++....     
T Consensus       306 ----------------~~~~--------~~l~~~~~~G~~~~~~~~~~~~~~-~~~~~~~yG~tE~~~~~~~~~~~~~~~  360 (567)
T PLN02479        306 ----------------ILPL--------PRVVHVMTAGAAPPPSVLFAMSEK-GFRVTHTYGLSETYGPSTVCAWKPEWD  360 (567)
T ss_pred             ----------------cccc--------cceeEEEEcCCCCCHHHHHHHHhc-CCceecccccccccccccceecccccc
Confidence                            0011        278999999999999999999876 8999999999998654432210     


Q ss_pred             ----CC-CcccCccccccCCeE-EEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccccCCccccCcEEEE
Q 010536          430 ----DV-FNMIGTVGVPMTTVE-ARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEW  503 (508)
Q Consensus       430 ----~~-~~~~~s~G~p~~~~~-~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDlg~~  503 (508)
                          .. .....+.|.+.++++ ++|+|.+++..++.+.++.|||+++|++++.||+++++.+.+.|.+|||+|||+|++
T Consensus       361 ~~~~~~~~~~~~~~g~~~~g~~~~~i~d~~~~~~~~~~g~~~GEl~v~g~~~~~GY~~~~~~t~~~~~~g~~~TGDl~~~  440 (567)
T PLN02479        361 SLPPEEQARLNARQGVRYIGLEGLDVVDTKTMKPVPADGKTMGEIVMRGNMVMKGYLKNPKANEEAFANGWFHSGDLGVK  440 (567)
T ss_pred             ccCcccccccccccCCCcCCcCceeEEcCCCCcccCCCCCCceEEEEeccchhhhhhcCcccccchhcCCceecceeEEE
Confidence                00 111146788888876 788883345545443336899999999999999999999999999999999999999


Q ss_pred             cCCCC
Q 010536          504 QPMEL  508 (508)
Q Consensus       504 d~dG~  508 (508)
                      |++|+
T Consensus       441 ~~~g~  445 (567)
T PLN02479        441 HPDGY  445 (567)
T ss_pred             cCCcc
Confidence            99985

>PRK13383 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.9e-48  Score=402.33  Aligned_cols=378  Identities=21%  Similarity=0.230  Sum_probs=298.6

Q ss_pred             CCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHH
Q 010536           41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME  120 (508)
Q Consensus        41 ~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~l  120 (508)
                      ...++.+.|.+.+..+|+++|+++.   +      +.+||+||.++++++|++|.+.|+++||+|+++++|+++++++++
T Consensus        33 ~~~~~~~~~~~~a~~~p~~~a~~~~---~------~~lTy~el~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~~~l  103 (516)
T PRK13383         33 GGTNPYTLLAVTAARWPGRTAIIDD---D------GALSYRELQRATESLARRLTRDGVAPGRAVGVMCRNGRGFVTAVF  103 (516)
T ss_pred             cCCcHHHHHHHHHHHCCCCcEEEeC---C------CcEeHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHH
Confidence            4578999999999999999999864   3      369999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCceeee
Q 010536          121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFS  200 (508)
Q Consensus       121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (508)
                      ||+++|++++|+++.++.+++.++++.++++.+++++.....+....       ..++.++....               
T Consensus       104 a~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~-------~~~~~~~~~~~---------------  161 (516)
T PRK13383        104 AVGLLGADVVPISTEFRSDALAAALRAHHISTVVADNEFAERIAGAD-------DAVAVIDPATA---------------  161 (516)
T ss_pred             HHHHhCeEEEEcCccCCHHHHHHHHhcCCCCEEEEchhHHHHHHhhh-------cceEEeccchh---------------
Confidence            99999999999999999999999999999999999887655443211       11222211100               


Q ss_pred             HHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHH
Q 010536          201 WEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD  280 (508)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g  280 (508)
                        ..  .   .....+...++.++++|||||||.||+|.++|.... ..........  ...+..+++++..+|++|.++
T Consensus       162 --~~--~---~~~~~p~~~~~~~~il~TSGTTG~PK~v~~s~~~~~-~~~~~~~~~~--~~~~~~~d~~~~~~pl~h~~g  231 (516)
T PRK13383        162 --GA--E---ESGGRPAVAAPGRIVLLTSGTTGKPKGVPRAPQLRS-AVGVWVTILD--RTRLRTGSRISVAMPMFHGLG  231 (516)
T ss_pred             --hh--h---cCCCCCCCCCCCcEEEECCCCCCCCCeeeecchhhh-hhhhHHhHHh--hhccCCCCeEEEecCCcchhh
Confidence              00  0   000111223556789999999999999999997432 1111111111  125678899999999999999


Q ss_pred             HHHHHHHHHcCcEEEEec-CCHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhcC
Q 010536          281 QIIETHCIHKGCSIGFWR-GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKG  359 (508)
Q Consensus       281 ~~~~~~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (508)
                      +...+.++..|+++++.. +++..+++.++++++|.+.++|.++..+........                         
T Consensus       232 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-------------------------  286 (516)
T PRK13383        232 LGMLMLTIALGGTVLTHRHFDAEAALAQASLHRADAFTAVPVVLARILELPPRVR-------------------------  286 (516)
T ss_pred             HHHHHHHHhcCCEEEECCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHhcccccc-------------------------
Confidence            988888899999998776 499999999999999999999999998864211000                         


Q ss_pred             CCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCcceeeccCCCCcccCccc
Q 010536          360 MPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVG  439 (508)
Q Consensus       360 ~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~s~G  439 (508)
                                +..++        +++|.+++||+++++++.++|.+.+|..+++.||+||++..+...........+++|
T Consensus       287 ----------~~~~~--------~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G  348 (516)
T PRK13383        287 ----------ARNPL--------PQLRVVMSSGDRLDPTLGQRFMDTYGDILYNGYGSTEVGIGALATPADLRDAPETVG  348 (516)
T ss_pred             ----------ccCCC--------CceEEEEECCCCCCHHHHHHHHHHcCchhhhcccccccccceeccccccccCCCccc
Confidence                      00001        379999999999999999999999999999999999998766544433333457899


Q ss_pred             cccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccccCCccccCcEEEEcCCCC
Q 010536          440 VPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQPMEL  508 (508)
Q Consensus       440 ~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDlg~~d~dG~  508 (508)
                      +|+|+++++|+| +++..++  .|+.|||+++|+.++.||++++.   +.+.+|||+|||+|++|++|+
T Consensus       349 ~~~~~~~~~i~d-~~~~~~~--~g~~Gel~v~g~~~~~~Y~~~~~---~~~~~g~~~TGDl~~~d~~G~  411 (516)
T PRK13383        349 KPVAGCPVRILD-RNNRPVG--PRVTGRIFVGGELAGTRYTDGGG---KAVVDGMTSTGDMGYLDNAGR  411 (516)
T ss_pred             CCCCCcEEEEEC-CCCCCCC--CCCceEEEEecCcccccccCCch---hheecCceecceeEEEcCCcc
Confidence            999999999999 7776554  45899999999999999998754   334689999999999999985

>PRK13388 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=6.6e-48  Score=401.17  Aligned_cols=378  Identities=17%  Similarity=0.193  Sum_probs=295.4

Q ss_pred             CCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCC-CCCCEEEEEcCCcHhHHHHHHH
Q 010536           43 ESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGV-NPGDRCGIYGSNCPEWIIAMEA  121 (508)
Q Consensus        43 ~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv-~~gd~Vai~~~n~~~~~~~~lA  121 (508)
                      .++.++|..++  .|+++|+++.   +      ..+||.||.++++++|.+|.+.|+ ++||+|+++++|+++++++++|
T Consensus         3 ~~~~~~l~~~~--~p~~~Al~~~---~------~~lTy~el~~~~~~la~~L~~~g~~~~~~~V~i~~~n~~~~v~~~lA   71 (540)
T PRK13388          3 DTIAQLLRDRA--GDDTIAVRYG---D------RTWTWREVLAEAAARAAALIALADPDRPLHVGVLLGNTPEMLFWLAA   71 (540)
T ss_pred             hhHHHHHHhhc--cCCceEEEEC---C------ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCcHHHHHHHH
Confidence            57888887754  7999999865   3      479999999999999999999999 8999999999999999999999


Q ss_pred             HHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCceeeeH
Q 010536          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW  201 (508)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (508)
                      |+++|++++||+|.++.+++..+++.++++++|+++.....+.+..   .+..+ ++.++..                .+
T Consensus        72 ~~~~Ga~~v~l~p~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~---~~~~~-~i~~~~~----------------~~  131 (540)
T PRK13388         72 AALGGYVLVGLNTTRRGAALAADIRRADCQLLVTDAEHRPLLDGLD---LPGVR-VLDVDTP----------------AY  131 (540)
T ss_pred             HHhCCCEEEEecccCChHHHHHHHHhcCCCEEEEChhhhHHHHhhc---ccCce-EEEccch----------------hh
Confidence            9999999999999999999999999999999999887665443321   11222 2222211                12


Q ss_pred             HHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHH
Q 010536          202 EEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ  281 (508)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~  281 (508)
                      .++........+......+++++++|||||||.||||.++|.++...+......+     .+..+|+++..+|++|.+++
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~~  206 (540)
T PRK13388        132 AELVAAAGALTPHREVDAMDPFMLIFTSGTTGAPKAVRCSHGRLAFAGRALTERF-----GLTRDDVCYVSMPLFHSNAV  206 (540)
T ss_pred             hhhhccccCcCCCCCCCCCCeEEEEECCCCCCCCCEEEecHHHHHHHHHHHHHHh-----CCCCCCEEEEeeCchhhcch
Confidence            2222211111112235678999999999999999999999999998887776666     77889999999999999988


Q ss_pred             HH-HHHHHHcCcEEEEecC-CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhcC
Q 010536          282 II-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKG  359 (508)
Q Consensus       282 ~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (508)
                      .. .+.++..|+++++.+. ++..+++.++++++|++..+|..+..++....                            
T Consensus       207 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~p~~l~~l~~~~~----------------------------  258 (540)
T PRK13388        207 MAGWAPAVASGAAVALPAKFSASGFLDDVRRYGATYFNYVGKPLAYILATPE----------------------------  258 (540)
T ss_pred             HHHHHHHHHcCcEEEECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCCC----------------------------
Confidence            75 4468899999988764 89999999999999999999999888753100                            


Q ss_pred             CCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCcceeeccCCCCcccCccc
Q 010536          360 MPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVG  439 (508)
Q Consensus       360 ~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~s~G  439 (508)
                            .  ...  .       ..+++.+ + |++++++..+.+.+.++.++++.||+||++.++....   ....+++|
T Consensus       259 ------~--~~~--~-------~~~l~~~-~-G~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~---~~~~~~vG  316 (540)
T PRK13388        259 ------R--PDD--A-------DNPLRVA-F-GNEASPRDIAEFSRRFGCQVEDGYGSSEGAVIVVREP---GTPPGSIG  316 (540)
T ss_pred             ------C--ccc--c-------ccceEEE-E-CCCCCHHHHHHHHHHhCCceecccccccccceeecCC---CCCCCCCC
Confidence                  0  000  0       0256643 3 6667888889998888999999999999987665322   12347999


Q ss_pred             cccCCeEEE-----------EeecCCCCccCCCCCCCCeEEEe-cCcccccccCCcccccccccCCccccCcEEEEcCCC
Q 010536          440 VPMTTVEAR-----------LESVPEMGYDALSSVPRGEICLR-GNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQPME  507 (508)
Q Consensus       440 ~p~~~~~~~-----------i~d~~~~~~~~~~~~~~GEl~v~-g~~v~~gY~~~~~~~~~~~~~gw~~TGDlg~~d~dG  507 (508)
                      +|++|+++.           ++| ++|.... ..++.|||+++ |++++.||+++++.+.+.|.+|||+|||+|++|+||
T Consensus       317 ~p~~g~~i~~~~~~~~~~~~~~d-~~g~~~~-~~~~~GEl~v~~g~~~~~gY~~~~~~t~~~~~~g~~~TGD~~~~~~dg  394 (540)
T PRK13388        317 RGAPGVAIYNPETLTECAVARFD-AHGALLN-ADEAIGELVNTAGAGFFEGYYNNPEATAERMRHGMYWSGDLAYRDADG  394 (540)
T ss_pred             CCCCCcEEEcCCCCccccceecc-Ccccccc-CCCcceEEEEecCCcccccccCChHHHHHHhhcCceeccceEEEcCCC
Confidence            999997653           233 3333221 23468999998 999999999999999999989999999999999998


Q ss_pred             C
Q 010536          508 L  508 (508)
Q Consensus       508 ~  508 (508)
                      +
T Consensus       395 ~  395 (540)
T PRK13388        395 W  395 (540)
T ss_pred             c
Confidence            5

>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=1.9e-48  Score=404.03  Aligned_cols=374  Identities=17%  Similarity=0.234  Sum_probs=282.2

Q ss_pred             CHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHHHHH
Q 010536           44 SPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACN  123 (508)
Q Consensus        44 ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~lA~~  123 (508)
                      -+.+.|+++++++|+++|+++.   ++  +.|+.+||+||.++++++|.+|.++  ++||+|+++++|+++++++++||+
T Consensus         3 ~~~~~l~~~~~~~~~~~a~~~~---~~--~~~~~~ty~el~~~~~~lA~~L~~~--~~g~~V~l~~~~~~e~~~~~la~~   75 (525)
T PRK05851          3 ELAAALSDAMTASGRDLVVLDR---ES--GLWRRHPWPEVHGRAENVAARLLDR--DRPGAVGLVGEPTVELVAAIQGAW   75 (525)
T ss_pred             hHHHHHHHHhcCCCCceEEeCC---CC--CcceeecHHHHHHHHHHHHHHHHhc--CCCCeEEEEcCCCHHHHHHHHHHH
Confidence            3889999999999999999865   32  3478999999999999999999998  899999999999999999999999


Q ss_pred             HcCCEEEeccCC--------CCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcC
Q 010536          124 SQAITYVPLYDT--------LGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELG  195 (508)
Q Consensus       124 ~~G~~~v~l~~~--------~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (508)
                      ++|++++ ++|.        ...+++..+++.++++++|++......+.....    .    +.+.+             
T Consensus        76 ~~G~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~----~----~~~~~-------------  133 (525)
T PRK05851         76 LAGAAVS-ILPGPVRGADDGRWADATLTRFAGIGVRTVLSHGSHLERLRAVDS----S----VTVHD-------------  133 (525)
T ss_pred             HcCCCCc-CCCCCCCccchhhHHHHHHHHHHhcCCCEEEeCHHHHHHHHHhhc----c----ccccc-------------
Confidence            9999865 4432        123455667899999999998765544322110    0    00000             


Q ss_pred             ceeeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCC-CCcEEEEecC
Q 010536          196 VSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCS-EEDTYFSFLP  274 (508)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~p  274 (508)
                           +....... .........++++++|+|||||||.||||.++|.++...+......+     ... .+|++++.+|
T Consensus       134 -----~~~~~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~~d~~l~~~p  202 (525)
T PRK05851        134 -----LATAAHTN-RSASLTPPDSGGPAVLQGTAGSTGTPRTAILSPGAVLSNLRGLNARV-----GLDAATDVGCSWLP  202 (525)
T ss_pred             -----cccccccc-ccccCCCCCCCCeEEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHh-----CCCCCCCeEEEcCC
Confidence                 00000000 00111224568999999999999999999999999999988877666     666 8899999999


Q ss_pred             hHHHHHHHHHHHHHHcCcEEEEec---C--CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHH
Q 010536          275 LAHIYDQIIETHCIHKGCSIGFWR---G--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAY  349 (508)
Q Consensus       275 l~~~~g~~~~~~~l~~G~~~~~~~---~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  349 (508)
                      ++|.+++...+.+++.|+++++.+   +  ++..+++.++++++|++.. |.++..++......                
T Consensus       203 l~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~-p~~~~~~l~~~~~~----------------  265 (525)
T PRK05851        203 LYHDMGLAFLLTAALAGAPLWLAPTTAFSASPFRWLSWLSDSRATLTAA-PNFAYNLIGKYARR----------------  265 (525)
T ss_pred             CccCccHHHHHHHHHcCCeEEEcCHHHHHHCHHHHHHHHHHhCCeEEeC-CcHHHHHHHHhhcc----------------
Confidence            999999988888999999999876   2  5788999999999998755 55544433211000                


Q ss_pred             HHHhhhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHh---cCC---ceeeecccccCCcc
Q 010536          350 NYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVT---SGA---PLTQGYGLTESCSG  423 (508)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~---~~~---~v~~~YG~TE~~~~  423 (508)
                                         ....+++        ++|.+++||+++++++.++|.+.   +|.   .+++.||+||++..
T Consensus       266 -------------------~~~~~l~--------~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~  318 (525)
T PRK05851        266 -------------------VSDVDLG--------ALRVALNGGEPVDCDGFERFATAMAPFGFDAGAAAPSYGLAESTCA  318 (525)
T ss_pred             -------------------ccCCCHH--------HhheeEeccccCCHHHHHHHHHHHhhcCCChhhcccccchhhhceE
Confidence                               0011222        78999999999999999998874   454   49999999999876


Q ss_pred             eeeccCCC--------------CcccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCccccccc
Q 010536          424 CFTSLADV--------------FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEV  489 (508)
Q Consensus       424 ~~~~~~~~--------------~~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~  489 (508)
                      ++......              ....+++|+|+||++++|+| +++.. ++..|+.|||+|+|++++.||+++++.+   
T Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d-~~~~~-~~~~g~~GEl~v~g~~~~~GY~~~~~~~---  393 (525)
T PRK05851        319 VTVPVPGIGLRVDEVTTDDGSGARRHAVLGNPIPGMEVRISP-GDGAA-GVAGREIGEIEIRGASMMSGYLGQAPID---  393 (525)
T ss_pred             EEecCCCCCceeeeeccccCcccceeeeecCCCCCcEEEEEC-CCCCc-cCCCCCeEEEEEecCchhhccccCCccC---
Confidence            65432210              12236899999999999999 66542 2334589999999999999999998653   


Q ss_pred             ccCCccccCcEEEEcCCCC
Q 010536          490 IVDGWFHTGDIGEWQPMEL  508 (508)
Q Consensus       490 ~~~gw~~TGDlg~~d~dG~  508 (508)
                       .+|||+|||+|++| +|+
T Consensus       394 -~~~~~~TGDl~~~~-~G~  410 (525)
T PRK05851        394 -PDDWFPTGDLGYLV-DGG  410 (525)
T ss_pred             -CCCceeccceEEEE-CCE
Confidence             37899999999997 563

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=2.4e-48  Score=481.33  Aligned_cols=380  Identities=20%  Similarity=0.259  Sum_probs=313.7

Q ss_pred             CCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHH
Q 010536           41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME  120 (508)
Q Consensus        41 ~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~l  120 (508)
                      ...++.++|.++++++|+++|+++.   +      +.+||+||.++++++|..|.+.|+++|++|+++++|+++++++++
T Consensus      2001 ~~~~~~~~~~~~a~~~p~~~A~~~~---~------~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~~~~~l 2071 (5163)
T PRK12316       2001 RGPGVHQRIAEQAARAPEAIAVVFG---D------QHLSYAELDSRANRLAHRLRARGVGPEVRVAIAAERSFELVVALL 2071 (5163)
T ss_pred             CCCCHHHHHHHHHHhCCCCeEEEcC---C------CeEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence            3468999999999999999999876   4      469999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCceeee
Q 010536          121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFS  200 (508)
Q Consensus       121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (508)
                      ||+++|+++|||+|.++.+++.++++.+++++++++......+...     .... .+.+...                 
T Consensus      2072 Ail~aGa~~vpld~~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~-----~~~~-~~~~~~~----------------- 2128 (5163)
T PRK12316       2072 AVLKAGGAYVPLDPNYPAERLAYMLEDSGAALLLTQRHLLERLPLP-----AGVA-RLPLDRD----------------- 2128 (5163)
T ss_pred             HHHhhceEEeecCCCCCHHHHHHHHHhcCCCEEEeChhhhhhcccc-----cccc-eEeccch-----------------
Confidence            9999999999999999999999999999999999987654432110     0111 1111100                 


Q ss_pred             HHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHH
Q 010536          201 WEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD  280 (508)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g  280 (508)
                       ..+ .............++++++|+|||||||.||||+++|+++.+.+......+     .+..+++++...|++|..+
T Consensus      2129 -~~~-~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~~fd~~ 2201 (5163)
T PRK12316       2129 -AEW-ADYPDTAPAVQLAGENLAYVIYTSGSTGLPKGVAVSHGALVAHCQAAGERY-----ELSPADCELQFMSFSFDGA 2201 (5163)
T ss_pred             -hhh-hccCccCCCCCCCCCCeEEEEeCccCCCCCCEeEEccHHHHHHHHHHHHhc-----CCCCcceEEEecCchHHHH
Confidence             000 000111122345789999999999999999999999999999998887776     7889999999999999988


Q ss_pred             HHHHHHHHHcCcEEEEecC---CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhh
Q 010536          281 QIIETHCIHKGCSIGFWRG---DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMK  357 (508)
Q Consensus       281 ~~~~~~~l~~G~~~~~~~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (508)
                      +..++.+|+.|+++++.+.   ++..+++.++++++|+++++|++++.+.+.....                        
T Consensus      2202 ~~~~~~~L~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~------------------------ 2257 (5163)
T PRK12316       2202 HEQWFHPLLNGARVLIRDDELWDPEQLYDEMERHGVTILDFPPVYLQQLAEHAERD------------------------ 2257 (5163)
T ss_pred             HHHHHHHHhCCCEEEeCCcccCCHHHHHHHHHHcCCeEEEcChHHHHHHHhhhhcc------------------------
Confidence            8889999999999977653   7899999999999999999999999886521100                        


Q ss_pred             cCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhc-CCceeeecccccCCcceeeccCCCC-c--
Q 010536          358 KGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESCSGCFTSLADVF-N--  433 (508)
Q Consensus       358 ~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~~~-~--  433 (508)
                                            ....+||.+++||+++++++.+.|.+.+ +..+++.||+||++..++....... .  
T Consensus      2258 ----------------------~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~ 2315 (5163)
T PRK12316       2258 ----------------------GRPPAVRVYCFGGEAVPAASLRLAWEALRPVYLFNGYGPTEAVVTPLLWKCRPQDPCG 2315 (5163)
T ss_pred             ----------------------cCCcceeEEEEecccCCHHHHHHHHHhCCCcEEEECccchhheeeeeeeecccccccC
Confidence                                  0002799999999999999999998866 6789999999999877665433221 1  


Q ss_pred             -ccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCccccccccc--------CCccccCcEEEEc
Q 010536          434 -MIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV--------DGWFHTGDIGEWQ  504 (508)
Q Consensus       434 -~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~~--------~gw~~TGDlg~~d  504 (508)
                       ...++|+|+++++++|+| ++++.+|.|  +.|||+|+|+++++||+++|+.|.+.|.        ++||+|||+|+++
T Consensus      2316 ~~~~~iG~p~~~~~~~i~d-~~~~~vp~g--~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~~~~~~~~~~yrTGDl~~~~ 2392 (5163)
T PRK12316       2316 AAYVPIGRALGNRRAYILD-ADLNLLAPG--MAGELYLGGEGLARGYLNRPGLTAERFVPDPFSASGERLYRTGDLARYR 2392 (5163)
T ss_pred             CCcCCcccccCCCEEEEEC-CCCCCCCCC--CeeEEEecchhhcccccCChhhhhhhccCCCCCCCCCeeEecccEEEEc
Confidence             125799999999999999 888777655  8999999999999999999999999982        3599999999999


Q ss_pred             CCCC
Q 010536          505 PMEL  508 (508)
Q Consensus       505 ~dG~  508 (508)
                      +||+
T Consensus      2393 ~dG~ 2396 (5163)
T PRK12316       2393 ADGV 2396 (5163)
T ss_pred             CCCc
Confidence            9985

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=5e-48  Score=471.36  Aligned_cols=381  Identities=20%  Similarity=0.215  Sum_probs=314.7

Q ss_pred             CCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHH
Q 010536           41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME  120 (508)
Q Consensus        41 ~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~l  120 (508)
                      ...++.++|+++++++|+++|+++.   +      +.+||+||.++++++|++|.++|+++|++|+++++++++++++++
T Consensus      1572 ~~~~~~~~~~~~a~~~p~~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~~~~V~l~~~~s~~~vv~~l 1642 (3956)
T PRK12467       1572 LARLVHQLIEDQAAATPEAVALVFG---E------QELTYGELNRRANRLAHRLIALGVGPEVLVGIAVERSLEMVVGLL 1642 (3956)
T ss_pred             ccccHHHHHHHHHHhCCCCeEEEeC---C------cEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCCHHHHHHHH
Confidence            3468999999999999999999875   3      479999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCceeee
Q 010536          121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFS  200 (508)
Q Consensus       121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (508)
                      ||+++|++++||+|.++.+++.++++.+++++++++......+...     ... .++.++...                
T Consensus      1643 avlkaG~~~vpldp~~p~~rl~~il~~~~~~~~l~~~~~~~~~~~~-----~~~-~~~~~~~~~---------------- 1700 (3956)
T PRK12467       1643 AILKAGGAYVPLDPEYPRERLAYMIEDSGIELLLTQSHLQARLPLP-----DGL-RSLVLDQED---------------- 1700 (3956)
T ss_pred             HhhccCceeeecCCCCCHHHHHHHHHhCCCCEEEeChhhhhhCccc-----cCC-cEEEecccc----------------
Confidence            9999999999999999999999999999999999987654332110     111 122222111                


Q ss_pred             HHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHH
Q 010536          201 WEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD  280 (508)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g  280 (508)
                        ++..............++++++|+|||||||.||||+++|+++...+......+     .+..++++++..|++|..+
T Consensus      1701 --~~~~~~~~~~~~~~~~~~~~ayiiyTSGSTG~PKGV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~~fd~~ 1773 (3956)
T PRK12467       1701 --DWLEGYSDSNPAVNLAPQNLAYVIYTSGSTGRPKGAGNRHGALVNRLCATQEAY-----QLSAADVVLQFTSFAFDVS 1773 (3956)
T ss_pred             --chhccCCCCCCCCCCCCcCcEEEEECCCcCCCCCEEEEcCHHHHHHHHHHHHhc-----CCCcccEEEEecCccHHHH
Confidence              011111111222345678999999999999999999999999999998877766     7788999999999999999


Q ss_pred             HHHHHHHHHcCcEEEEecC----CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhh
Q 010536          281 QIIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNM  356 (508)
Q Consensus       281 ~~~~~~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (508)
                      +..++.++..|+++++.+.    ++..+++.|+++++|++.++|++++.|++....                        
T Consensus      1774 ~~~~~~~L~~G~~lvi~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~------------------------ 1829 (3956)
T PRK12467       1774 VWELFWPLINGARLVIAPPGAHRDPEQLIQLIERQQVTTLHFVPSMLQQLLQMDEQ------------------------ 1829 (3956)
T ss_pred             HHHHHHHHhCCCEEEEcChhhcCCHHHHHHHHHHcCCeEEECCHHHHHHHHhhccc------------------------
Confidence            8888999999999999763    789999999999999999999999988642000                        


Q ss_pred             hcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhc-CCceeeecccccCCcceeeccCC----C
Q 010536          357 KKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESCSGCFTSLAD----V  431 (508)
Q Consensus       357 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~----~  431 (508)
                                    ..++        +++|.+++||+++++++.+.|.+.+ +..++|.||+||+++.++.....    .
T Consensus      1830 --------------~~~~--------~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~t~~~~~~~~~~ 1887 (3956)
T PRK12467       1830 --------------VEHP--------LSLRRVVCGGEALEVEALRPWLERLPDTGLFNLYGPTETAVDVTHWTCRRKDLE 1887 (3956)
T ss_pred             --------------cccC--------CCceEEEEccccCCHHHHHHHHHhCCCCeEEeCccCCcCEEeEEEEeccccccc
Confidence                          0001        3899999999999999999998876 57899999999998776654322    1


Q ss_pred             CcccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCccccccccc--------CCccccCcEEEE
Q 010536          432 FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV--------DGWFHTGDIGEW  503 (508)
Q Consensus       432 ~~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~~--------~gw~~TGDlg~~  503 (508)
                      .....++|+|+++++++|.| ++++.+|.|  +.|||+|+|+++++||+++|+.+.+.|.        ++||+|||+|++
T Consensus      1888 ~~~~~~iG~p~~~~~~~vld-~~~~~vp~G--~~GEl~i~G~~v~~GYl~~p~~t~~~f~~~p~~~~~~r~yrTGDl~~~ 1964 (3956)
T PRK12467       1888 GRDSVPIGQPIANLSTYILD-ASLNPVPIG--VAGELYLGGVGLARGYLNRPALTAERFVADPFGTVGSRLYRTGDLARY 1964 (3956)
T ss_pred             cCCCCCcccccCCCEEEEEC-CCCCCCCCC--CceEEEeccccccccccCChhhhhhhCcCCCCCCCCccceeccceEEE
Confidence            12236899999999999999 888777665  8999999999999999999999999882        249999999999


Q ss_pred             cCCCC
Q 010536          504 QPMEL  508 (508)
Q Consensus       504 d~dG~  508 (508)
                      ++||+
T Consensus      1965 ~~dG~ 1969 (3956)
T PRK12467       1965 RADGV 1969 (3956)
T ss_pred             CCCCC
Confidence            99985

>PRK08974 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=3.5e-47  Score=398.26  Aligned_cols=406  Identities=20%  Similarity=0.314  Sum_probs=311.8

Q ss_pred             CCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHh-CCCCCCCEEEEEcCCcHhHHHHHH
Q 010536           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRS-RGVNPGDRCGIYGSNCPEWIIAME  120 (508)
Q Consensus        42 ~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~-~gv~~gd~Vai~~~n~~~~~~~~l  120 (508)
                      +.++.++|+++++++|+++|+++.   +      +.+||.||.++++++|.+|.+ .|+++||+|+++++|+++++++++
T Consensus        22 ~~~l~~~l~~~a~~~p~~~a~~~~---~------~~lTy~~l~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~l   92 (560)
T PRK08974         22 YQSLVDMFEQAVARYADQPAFINM---G------EVMTFRKLEERSRAFAAYLQNGLGLKKGDRVALMMPNLLQYPIALF   92 (560)
T ss_pred             cccHHHHHHHHHHhCCCCceEEEC---C------ccccHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHH
Confidence            467999999999999999999864   3      479999999999999999985 899999999999999999999999


Q ss_pred             HHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchh--hhh--------
Q 010536          121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQ--KKE--------  190 (508)
Q Consensus       121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--------  190 (508)
                      ||+++|++++|++|..+.+++.++++.++++.++++++....+.+....  ...+.++.........  ...        
T Consensus        93 A~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (560)
T PRK08974         93 GILRAGMIVVNVNPLYTPRELEHQLNDSGAKAIVIVSNFAHTLEKVVFK--TPVKHVILTRMGDQLSTAKGTLVNFVVKY  170 (560)
T ss_pred             HHHHcCcEEeccCccCCHHHHHHHHHhcCceEEEEeccccHHHHHHhhh--cCcceEEEecccccccccccccccchhhh
Confidence            9999999999999999999999999999999999987655444332211  1122222211100000  000        


Q ss_pred             -----hhhcCceeeeHHHHHhcCC-CCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCC
Q 010536          191 -----AEELGVSCFSWEEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCS  264 (508)
Q Consensus       191 -----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~  264 (508)
                           .........++.+...... ..........+++++++|||||||.||+|.++|.++..++......+..  ....
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~--~~~~  248 (560)
T PRK08974        171 IKRLVPKYHLPDAISFRSALHKGRRMQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGP--LLHP  248 (560)
T ss_pred             cccccccccCCCcccHHHHhhccCCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEchHHHHHHHHHHHHhhcc--ccCC
Confidence                 0000001122333332221 1111223467899999999999999999999999998877654433311  1234


Q ss_pred             CCcEEEEecChHHHHHHHH-HHHHHHcCcEEEEec--CCHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhH
Q 010536          265 EEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWR--GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALS  341 (508)
Q Consensus       265 ~~~~~l~~~pl~~~~g~~~-~~~~l~~G~~~~~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~  341 (508)
                      .++.++..+|++|.+++.. .+.++..|+++++..  .++..+++.++++++|++.++|.+++.+.....          
T Consensus       249 ~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~----------  318 (560)
T PRK08974        249 GKELVVTALPLYHIFALTVNCLLFIELGGQNLLITNPRDIPGFVKELKKYPFTAITGVNTLFNALLNNEE----------  318 (560)
T ss_pred             CccEEEEeCcHHHHHHHHHHHHHHhhcCCeEEEecCccCHHHHHHHHHhcCcceEcCcHHHHHHHHhCcC----------
Confidence            4678888999999999764 566788888877764  378899999999999999999999998864210          


Q ss_pred             HHHHHHHHHHHhhhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCC
Q 010536          342 KKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESC  421 (508)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~  421 (508)
                                                 ....++        +++|.+++||+++++++.++|++.+|..+++.||+||++
T Consensus       319 ---------------------------~~~~~~--------~~lr~~~~gg~~~~~~~~~~~~~~~g~~~~~~YG~tE~~  363 (560)
T PRK08974        319 ---------------------------FQELDF--------SSLKLSVGGGMAVQQAVAERWVKLTGQYLLEGYGLTECS  363 (560)
T ss_pred             ---------------------------cccCCc--------cceeEEEecCccCCHHHHHHHHHHhCCcEEeeecccccC
Confidence                                       011112        279999999999999999999998899999999999998


Q ss_pred             cceeeccCCCCcccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccccCCccccCcEE
Q 010536          422 SGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIG  501 (508)
Q Consensus       422 ~~~~~~~~~~~~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDlg  501 (508)
                      ..++....+.....+++|.|+|+++++|++ +++..++.+  +.|||+++|+.++.||+++++.+.+.|.+|||+|||+|
T Consensus       364 ~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~~~~~g--~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~  440 (560)
T PRK08974        364 PLVSVNPYDLDYYSGSIGLPVPSTEIKLVD-DDGNEVPPG--EPGELWVKGPQVMLGYWQRPEATDEVIKDGWLATGDIA  440 (560)
T ss_pred             ceeeccCCCCcccCCccccCcCCCEEEEEC-CCCCCCCCC--CceEEEEecCCcchhhcCChhhhhhhhhcCCcccCCEE
Confidence            877665544334457899999999999999 777666554  89999999999999999999999888889999999999


Q ss_pred             EEcCCCC
Q 010536          502 EWQPMEL  508 (508)
Q Consensus       502 ~~d~dG~  508 (508)
                      ++|++|+
T Consensus       441 ~~~~~g~  447 (560)
T PRK08974        441 VMDEEGF  447 (560)
T ss_pred             EEcCCce
Confidence            9999874

>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1

Probab=100.00  E-value=1.6e-47  Score=395.88  Aligned_cols=374  Identities=18%  Similarity=0.234  Sum_probs=302.6

Q ss_pred             CHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHHHHH
Q 010536           44 SPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACN  123 (508)
Q Consensus        44 ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~lA~~  123 (508)
                      ++.+.|.+.|+.+|+++|+.+.   +      +.+||+||.+++.++|..|.+.|+++||+|+++++|+.+++++++||+
T Consensus         1 ~~~~~l~~~a~~~p~~~a~~~~---~------~~~ty~el~~~~~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~   71 (502)
T TIGR01734         1 KLIEAIQAFAETYPQTIAYRYQ---G------QELTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSI   71 (502)
T ss_pred             CHHHHHHHHHHHCCCceEEEcC---C------cEEeHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeCCCHHHHHHHHHHH
Confidence            4778999999999999999765   3      479999999999999999999999999999999999999999999999


Q ss_pred             HcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCceeeeHHH
Q 010536          124 SQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEE  203 (508)
Q Consensus       124 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (508)
                      ++|++++|+++.++.+++..+++..+++.+++++........        .. ++.+..                  .+.
T Consensus        72 ~~G~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~--------~~-~~~~~~------------------~~~  124 (502)
T TIGR01734        72 KSGHAYIPVDTSIPSERIEMIIEAAGPELVIHTAELSIDAVG--------TQ-IITLSA------------------LEQ  124 (502)
T ss_pred             HhCCEEeCCCCcChHHHHHHHHHhcCCCEEEecccccccccC--------Cc-eEEchH------------------hhh
Confidence            999999999999999999999999999999998765332211        11 111110                  111


Q ss_pred             HHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHH
Q 010536          204 FLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII  283 (508)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~  283 (508)
                      +...............+++++++|||||||.||+|.++|.++...+......+     ....++++++..|++|..++..
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~~~~~~~~  199 (502)
T TIGR01734       125 AETSGGPVSFDHAVKGDDNYYIIYTSGSTGNPKGVQISHDNLVSFTNWMLADF-----PLSEGKQFLNQAPFSFDLSVMD  199 (502)
T ss_pred             hhhhcCCccccccCCCCCeEEEEECCCCCCCCCEEEEecHHHHHHHHHHHHhC-----CCCCCceEEeecCceechhHHH
Confidence            11111111112234568899999999999999999999999998888766655     6778899999999999999888


Q ss_pred             HHHHHHcCcEEEEecC----CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhcC
Q 010536          284 ETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKG  359 (508)
Q Consensus       284 ~~~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (508)
                      .+.+++.|+++++.+.    ++..+++.+++++++.+.++|.+++.++....                            
T Consensus       200 ~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~p~~~~~~l~~~~----------------------------  251 (502)
T TIGR01734       200 LYPCLASGGTLHCLDKDITNNFKLLFEELPKTGLNVWVSTPSFVDMCLLDPN----------------------------  251 (502)
T ss_pred             HHHHHHCCCEEEEcCHHHhcCHHHHHHHHHHcCCeEEEEChhHHHHHHhccc----------------------------
Confidence            8899999999998763    78999999999999999999999877643100                            


Q ss_pred             CCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhc-CCceeeecccccCCcceeeccCC----CCcc
Q 010536          360 MPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESCSGCFTSLAD----VFNM  434 (508)
Q Consensus       360 ~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~----~~~~  434 (508)
                               .+..++        ++++.++++|+++++++.+++.+.+ +..+++.||+||+++.+......    ....
T Consensus       252 ---------~~~~~~--------~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~  314 (502)
T TIGR01734       252 ---------FNQENY--------PHLTHFLFCGEELPVKTAKALLERFPKATIYNTYGPTEATVAVTSVKITQEILDQYP  314 (502)
T ss_pred             ---------cccccC--------CcccEEEEcCCcCCHHHHHHHHHHCCCcEEEeCccCCcceEEEEEEEccccccccCC
Confidence                     001111        3789999999999999999999887 78999999999987655433221    1222


Q ss_pred             cCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCccccccccc----CCccccCcEEEEcCC
Q 010536          435 IGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV----DGWFHTGDIGEWQPM  506 (508)
Q Consensus       435 ~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~~----~gw~~TGDlg~~d~d  506 (508)
                      ..++|++.|+++++|++ +++..++.  |+.|||+++|+.++.||+++++.+.+.|.    ++||+|||+|++|++
T Consensus       315 ~~~vg~~~~~~~~~i~~-~~~~~~~~--g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~TGDlg~~~~~  387 (502)
T TIGR01734       315 RLPIGFAKPDMNLFIMD-EEGEPLPE--GEKGEIVIVGPSVSKGYLNNPEKTAEAFFSHEGQPAYRTGDAGTITDG  387 (502)
T ss_pred             ccccccccCCCEEEEEC-CCCCCCCC--CCeeEEEEccccccccccCCcccchHhheeCCCcEEEECCCEEEEECC
Confidence            35799999999999999 77766654  48999999999999999999998887762    359999999999975

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=8.2e-48  Score=476.57  Aligned_cols=379  Identities=20%  Similarity=0.249  Sum_probs=314.3

Q ss_pred             CCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHHH
Q 010536           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (508)
Q Consensus        42 ~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~lA  121 (508)
                      ..++.++|.++++++|+++|+++.   +      +.+||+||.++++++|+.|.+.|+++|++|+++++|+++++++++|
T Consensus       510 ~~~~~~~~~~~a~~~p~~~A~~~~---~------~~~TY~eL~~~~~~lA~~L~~~gv~~g~~V~l~~~~s~~~i~~~la  580 (5163)
T PRK12316        510 QRGVHRLFEEQVERTPEAPALAFG---E------ETLDYAELNRRANRLAHALIERGVGPDVLVGVAMERSIEMVVALLA  580 (5163)
T ss_pred             CCCHHHHHHHHHHHCCCCeEEEeC---C------ceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence            478999999999999999999875   3      4799999999999999999999999999999999999999999999


Q ss_pred             HHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCceeeeH
Q 010536          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW  201 (508)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (508)
                      |+++|++++||+|.++.+++.++++.++++++|++......+..      .....++.++....                
T Consensus       581 ~~~aG~~~vpld~~~p~~rl~~il~~~~~~~~l~~~~~~~~~~~------~~~~~~~~~~~~~~----------------  638 (5163)
T PRK12316        581 ILKAGGAYVPLDPEYPAERLAYMLEDSGVQLLLSQSHLGRKLPL------AAGVQVLDLDRPAA----------------  638 (5163)
T ss_pred             HHHcCCEEeccCccCcHHHHHHHHHhCCCCEEEEChhhhhhCCc------ccCceEEEecCcch----------------
Confidence            99999999999999999999999999999999998765432211      00112222221110                


Q ss_pred             HHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHH
Q 010536          202 EEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ  281 (508)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~  281 (508)
                        +..............++++++|+|||||||.||||+++|++++..+......+     .+..++++++.+|++|..++
T Consensus       639 --~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~fd~~~  711 (5163)
T PRK12316        639 --WLEGYSEENPGTELNPENLAYVIYTSGSTGKPKGAGNRHRALSNRLCWMQQAY-----GLGVGDTVLQKTPFSFDVSV  711 (5163)
T ss_pred             --hhccCCCCCCCCCCCCCCeEEEEECCCcCCCCCEeeEcCHHHHHHHHHHHHhc-----CCCCCCEEEeeCCeehHHHH
Confidence              01111111222345678999999999999999999999999999998887777     77889999999999999999


Q ss_pred             HHHHHHHHcCcEEEEec----CCHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhh
Q 010536          282 IIETHCIHKGCSIGFWR----GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMK  357 (508)
Q Consensus       282 ~~~~~~l~~G~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (508)
                      ..++.+|+.|+++++.+    .++..+++.++++++|++.++|++++.|++...                          
T Consensus       712 ~~~~~~L~~G~~l~i~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~--------------------------  765 (5163)
T PRK12316        712 WEFFWPLMSGARLVVAAPGDHRDPAKLVELINREGVDTLHFVPSMLQAFLQDED--------------------------  765 (5163)
T ss_pred             HHHHHHHhCCCEEEECCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhccc--------------------------
Confidence            88999999999999974    389999999999999999999999998864100                          


Q ss_pred             cCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhc-CCceeeecccccCCcceeeccC-CCCccc
Q 010536          358 KGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESCSGCFTSLA-DVFNMI  435 (508)
Q Consensus       358 ~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~-~~~~~~  435 (508)
                                 ..  ++        +++|.+++||+++++++.+.+.+.+ +..++|.||+||++..++.... ......
T Consensus       766 -----------~~--~~--------~~l~~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~  824 (5163)
T PRK12316        766 -----------VA--SC--------TSLRRIVCSGEALPADAQEQVFAKLPQAGLYNLYGPTEAAIDVTHWTCVEEGGDS  824 (5163)
T ss_pred             -----------cc--cC--------CCccEEEEeeccCCHHHHHHHHHhCCCCeEEeCcCcChheeeeeEEecccccCCC
Confidence                       00  11        3899999999999999999997765 6899999999999865544332 222334


Q ss_pred             CccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCccccccccc-------CCccccCcEEEEcCCCC
Q 010536          436 GTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV-------DGWFHTGDIGEWQPMEL  508 (508)
Q Consensus       436 ~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~~-------~gw~~TGDlg~~d~dG~  508 (508)
                      .++|+|++|++++|+| +++..+|.|  +.|||+|+|++++.||+++++.+.+.|.       ++||+|||+|++|+||+
T Consensus       825 ~~iG~p~~~~~~~i~d-~~~~~~p~G--~~GEl~i~G~~v~~GYl~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~dG~  901 (5163)
T PRK12316        825 VPIGRPIANLACYILD-ANLEPVPVG--VLGELYLAGRGLARGYHGRPGLTAERFVPSPFVAGERMYRTGDLARYRADGV  901 (5163)
T ss_pred             CCCccccCCCEEEEEC-CCCCCCCCC--CceEEEecccccChhhCCChhhhhhhCCCCCCCCCCeeEecCccEEECCCCC
Confidence            6899999999999999 888766655  8999999999999999999999999882       35999999999999985

>PRK07867 acyl-CoA synthetase; Validated

Probab=100.00  E-value=8.3e-47  Score=391.70  Aligned_cols=376  Identities=18%  Similarity=0.232  Sum_probs=296.4

Q ss_pred             CCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhC-CCCCCCEEEEEcCCcHhHHHHHH
Q 010536           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSR-GVNPGDRCGIYGSNCPEWIIAME  120 (508)
Q Consensus        42 ~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~-gv~~gd~Vai~~~n~~~~~~~~l  120 (508)
                      ..++.++|.+++.  ++++++++.   +      +.+||.||.++++++|.+|.++ |++++++|+++++|+++++++++
T Consensus         4 ~~~~~~~l~~~a~--~~~~a~~~~---~------~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~V~i~~~n~~~~~~~~l   72 (529)
T PRK07867          4 APTVAELLLPLAE--DDDRGLYFE---D------SFTSWREHIRGSAARAAALRARLDPTRPPHVGVLLDNTPEFSLLLG   72 (529)
T ss_pred             cccHHHHHHHhcc--cCCceEEEC---C------cEEeHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHHH
Confidence            4678899988775  788998764   3      5799999999999999999997 89999999999999999999999


Q ss_pred             HHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCceeee
Q 010536          121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFS  200 (508)
Q Consensus       121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (508)
                      ||+++|++++|+++..+.+++..+++.++++++|+++.....+.+..    ... .++....                ..
T Consensus        73 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~----~~~-~~~~~~~----------------~~  131 (529)
T PRK07867         73 AAALSGIVPVGLNPTRRGAALARDIAHADCQLVLTESAHAELLDGLD----PGV-RVINVDS----------------PA  131 (529)
T ss_pred             HHHhcCCEEEEecCCCChHHHHHHHHhCCCeEEEECHhHHHHHHhhc----cCc-eEEEecc----------------cc
Confidence            99999999999999999999999999999999999987665443321    111 1222211                01


Q ss_pred             HHHHHhcC-CCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHH
Q 010536          201 WEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIY  279 (508)
Q Consensus       201 ~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~  279 (508)
                      +.+++... ...........+++++++|||||||.||+|.++|+++......+...+     .+..+|+++..+|++|.+
T Consensus       132 ~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~~~~  206 (529)
T PRK07867        132 WADELAAHRDAEPPFRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLAQRF-----GLGPDDVCYVSMPLFHSN  206 (529)
T ss_pred             HHHHhcccCCCCCCcccCCccceEEEEECCCCCCCCcEEEecHHHHHHHHHHHHHhh-----CCCcccEEEEecchhHHH
Confidence            33333221 111223345678999999999999999999999999998888876666     677899999999999999


Q ss_pred             HHHH-HHHHHHcCcEEEEecC-CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhh
Q 010536          280 DQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMK  357 (508)
Q Consensus       280 g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (508)
                      ++.. .+.++..|+++++.+. ++..+++.++++++|++.++|..+..++....                          
T Consensus       207 ~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~ll~~~~--------------------------  260 (529)
T PRK07867        207 AVMAGWAVALAAGASIALRRKFSASGFLPDVRRYGATYANYVGKPLSYVLATPE--------------------------  260 (529)
T ss_pred             HHHHHHHHHHhcCceEEecCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCC--------------------------
Confidence            9875 5568999999988764 89999999999999999999999887754110                          


Q ss_pred             cCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCcceeeccCCCCcccCc
Q 010536          358 KGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGT  437 (508)
Q Consensus       358 ~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~s  437 (508)
                              .  .+..         ..++|. ++||+.+++.. +++.+.+|.++++.||+||+++.+....   ....++
T Consensus       261 --------~--~~~~---------~~~lr~-~~gg~~~~~~~-~~~~~~~g~~l~~~YG~TE~~~~~~~~~---~~~~~~  316 (529)
T PRK07867        261 --------R--PDDA---------DNPLRI-VYGNEGAPGDI-ARFARRFGCVVVDGFGSTEGGVAITRTP---DTPPGA  316 (529)
T ss_pred             --------c--cccc---------ccceEE-EecCCCChHHH-HHHHHHhCCcEEEeecccccccccccCC---CCCCCC
Confidence                    0  0000         026774 56888887765 5667777999999999999986554322   123378


Q ss_pred             cccccCCeEEEEeecCCCCccCCCCCC------------CCeEEE-ecCcccccccCCcccccccccCCccccCcEEEEc
Q 010536          438 VGVPMTTVEARLESVPEMGYDALSSVP------------RGEICL-RGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQ  504 (508)
Q Consensus       438 ~G~p~~~~~~~i~d~~~~~~~~~~~~~------------~GEl~v-~g~~v~~gY~~~~~~~~~~~~~gw~~TGDlg~~d  504 (508)
                      +|.|+++  ++|++.+.+..++.+  +            .|||++ +|++++.||+++++.+.+.|.+|||+|||+|++|
T Consensus       317 ~g~~~~~--~~i~~~~~~~~~~~g--~~~~~~~~~~~~~~Gel~i~~g~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~  392 (529)
T PRK07867        317 LGPLPPG--VAIVDPDTGTECPPA--EDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEADAERMRGGVYWSGDLAYRD  392 (529)
T ss_pred             cCCCCCC--EEEEECCCCCCCCCC--ccccccccccCCcceEEEEecCCcccccccCChHhhhhhhcCCeEeeccEEEEe
Confidence            9999999  677773344444443  5            899999 9999999999999999998999999999999999


Q ss_pred             CCCC
Q 010536          505 PMEL  508 (508)
Q Consensus       505 ~dG~  508 (508)
                      ++|+
T Consensus       393 ~~g~  396 (529)
T PRK07867        393 ADGY  396 (529)
T ss_pred             CCCc
Confidence            9985

>PRK13390 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=4.4e-47  Score=392.32  Aligned_cols=380  Identities=18%  Similarity=0.216  Sum_probs=290.9

Q ss_pred             HHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHHHHHHcCCEEE
Q 010536           51 DSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYV  130 (508)
Q Consensus        51 ~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~lA~~~~G~~~v  130 (508)
                      .+|+++|+++|+.+.   +..    +.+||+||.++++++|+.|.++|+++||+|+++++|+++++++++||+++|++++
T Consensus         5 ~~a~~~p~~~a~~~~---~~~----~~lTy~el~~~~~~la~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~Ga~~~   77 (501)
T PRK13390          5 THAQIAPDRPAVIVA---ETG----EQVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVVLWAALRSGLYIT   77 (501)
T ss_pred             hhhhhCCCCcEEEec---CCC----eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEe
Confidence            467789999999864   322    5799999999999999999999999999999999999999999999999999999


Q ss_pred             eccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCceeeeHHHHHhcCCC
Q 010536          131 PLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTL  210 (508)
Q Consensus       131 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (508)
                      |+++.++.+++.++++.++++++++++...........    .....+.+....           .....+++...... 
T Consensus        78 ~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~----~~~~~~~~~~~~-----------~~~~~~~~~~~~~~-  141 (501)
T PRK13390         78 AINHHLTAPEADYIVGDSGARVLVASAALDGLAAKVGA----DLPLRLSFGGEI-----------DGFGSFEAALAGAG-  141 (501)
T ss_pred             ccccCCCHHHHHHHHHhcCCcEEEEcchhhhHHHHhhh----ccceEEEecCcc-----------cccccHHHHhcccC-
Confidence            99999999999999999999999998754332211110    111111111100           01123333322211 


Q ss_pred             CCCCCCCCCCCeEEEEecCCCCCCcceeec--chHHHHHHHhh----hhhhhhhccccCCCCcEEEEecChHHHHHHHHH
Q 010536          211 DCELPPKKKTNISTIMYTSGTTGEPKGVVL--TNQAIVAEVLS----VDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIE  284 (508)
Q Consensus       211 ~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~--sh~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~  284 (508)
                         ......+++++|+|||||||.||+|.+  +|.++......    ....+     .+..++++++.+|++|.+++...
T Consensus       142 ---~~~~~~~~~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~~h~~~~~~~  213 (501)
T PRK13390        142 ---PRLTEQPCGAVMLYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAFY-----DISESDIYYSSAPIYHAAPLRWC  213 (501)
T ss_pred             ---CCCCCCcccEEEEeCCCCCCCCCEEEeeccccccccchhhhHhhHHHHh-----CCCCCCeEEecccchhhhHHHHH
Confidence               011123357999999999999999995  45555443211    11122     66788999999999999988765


Q ss_pred             HHHHHcCcEEEEecC-CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhcCCCCC
Q 010536          285 THCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQN  363 (508)
Q Consensus       285 ~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (508)
                      ...+..|+++++.+. ++..+++.++++++|++.++|+++..+.+.....                              
T Consensus       214 ~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~------------------------------  263 (501)
T PRK13390        214 SMVHALGGTVVLAKRFDAQATLGHVERYRITVTQMVPTMFVRLLKLDADV------------------------------  263 (501)
T ss_pred             HHHHhcCceEEEcCCcCHHHHHHHHHHcCCeEEEecHHHHHHHHhccchh------------------------------
Confidence            556778999988764 8999999999999999999999999886421000                              


Q ss_pred             cchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCcceeeccCCCCcccCccccccC
Q 010536          364 KAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMT  443 (508)
Q Consensus       364 ~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~s~G~p~~  443 (508)
                           ....++        .++|.+++||+++++++.+.+++.++..+++.||+||+++++...........+++|+|++
T Consensus       264 -----~~~~~~--------~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~  330 (501)
T PRK13390        264 -----RTRYDV--------SSLRAVIHAAAPCPVDVKHAMIDWLGPIVYEYYSSTEAHGMTFIDSPDWLAHPGSVGRSVL  330 (501)
T ss_pred             -----cccCCh--------hhhheEEEcCCCCCHHHHHHHHHhcCCceeeeecccccCceEEecchhhccCCCCcCCccc
Confidence                 001112        2789999999999999999999988999999999999987655433332233478999999


Q ss_pred             CeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCccccccccc---CCccccCcEEEEcCCCC
Q 010536          444 TVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV---DGWFHTGDIGEWQPMEL  508 (508)
Q Consensus       444 ~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~~---~gw~~TGDlg~~d~dG~  508 (508)
                      + +++|+| +++..++.  |+.|||+|+|++++.||+++++.+.+.|.   ++|++|||+|++|+||+
T Consensus       331 g-~~~i~d-~~~~~~~~--g~~Gel~v~~~~~~~gy~~~~~~t~~~~~~~~~~w~~tGDl~~~~~dg~  394 (501)
T PRK13390        331 G-DLHICD-DDGNELPA--GRIGTVYFERDRLPFRYLNDPEKTAAAQHPAHPFWTTVGDLGSVDEDGY  394 (501)
T ss_pred             c-eEEEEC-CCCCCCCC--CCceEEEEecCCccccccCChhhhHHhhccCCCceEEcCceEEECCCCe
Confidence            9 799999 77776554  59999999999999999999999988773   67999999999999985

>PRK08279 long-chain-acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.6e-47  Score=401.07  Aligned_cols=413  Identities=18%  Similarity=0.237  Sum_probs=308.8

Q ss_pred             CCCCCCCCcccccccccCCCCCCCCCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHH
Q 010536           16 ADGKPSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMR   95 (508)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~   95 (508)
                      +.+.|......+........  .+....++.++|.+.++++|+++|+++.   +      +.+||+||.++++++|.+|.
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~--~~~~~~tl~~~l~~~a~~~p~~~Ai~~~---~------~~~Ty~eL~~~~~~la~~L~   80 (600)
T PRK08279         12 PRRLPDLPGILRGLKRTALI--TPDSKRSLGDVFEEAAARHPDRPALLFE---D------QSISYAELNARANRYAHWAA   80 (600)
T ss_pred             cccCCchhHHHhhhhhhccc--CCCCcccHHHHHHHHHHhCCCCcEEEeC---C------CcccHHHHHHHHHHHHHHHH
Confidence            33444444444444433332  2245679999999999999999999875   3      46999999999999999999


Q ss_pred             hCCCCCCCEEEEEcCCcHhHHHHHHHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCcc
Q 010536           96 SRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLK  175 (508)
Q Consensus        96 ~~gv~~gd~Vai~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~  175 (508)
                      +.|+++||+|+++++|+++++++++||+++|++++++++.++.+++.++++.++++++|++.+....+.+..... ....
T Consensus        81 ~~g~~~gd~V~i~~~n~~~~v~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~-~~~~  159 (600)
T PRK08279         81 ARGVGKGDVVALLMENRPEYLAAWLGLAKLGAVVALLNTQQRGAVLAHSLNLVDAKHLIVGEELVEAFEEARADL-ARPP  159 (600)
T ss_pred             hcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEeecCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHhhhh-cccc
Confidence            999999999999999999999999999999999999999999999999999999999999987766654433221 1222


Q ss_pred             EEEEecCCCchhhhhhhhcCceeeeHHHHHhcC---CC--CCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHh
Q 010536          176 TIVSFANVSSSQKKEAEELGVSCFSWEEFLQLG---TL--DCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVL  250 (508)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~  250 (508)
                      .++..+......          ...+.++....   ..  .........+++++|+|||||||.||+|.++|.++..++.
T Consensus       160 ~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~sh~~l~~~~~  229 (600)
T PRK08279        160 RLWVAGGDTLDD----------PEGYEDLAAAAAGAPTTNPASRSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMG  229 (600)
T ss_pred             eEEEecCccccc----------cccHHHHhhhcccCCccCCCcccCCCccccEEEEEcCCCCCCCcEEEEeHHHHHHHHH
Confidence            233322111000          11222222211   11  1122334668999999999999999999999999999998


Q ss_pred             hhhhhhhhccccCCCCcEEEEecChHHHHHHHH-HHHHHHcCcEEEEecC-CHHhHHHHhhhhcCeEEEecchHHHHHHH
Q 010536          251 SVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYT  328 (508)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~  328 (508)
                      .+...+     .+..+|++++.+|++|.+++.. .+.++..|+++++.+. ++..+++.++++++|++.++|++++.++.
T Consensus       230 ~~~~~~-----~l~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~l~~~l~~  304 (600)
T PRK08279        230 GFGGLL-----RLTPDDVLYCCLPLYHNTGGTVAWSSVLAAGATLALRRKFSASRFWDDVRRYRATAFQYIGELCRYLLN  304 (600)
T ss_pred             HHHHhc-----CCCCCcEEEEecCchhhhhHHHHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhcceEEeehHHHHHHHHh
Confidence            877766     7889999999999999999985 5567888888888764 89999999999999999999999988764


Q ss_pred             HHHHHhhcCChhHHHHHHHHHHHHhhhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcC
Q 010536          329 GISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG  408 (508)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~  408 (508)
                      ...                                  ...   ...        .+++.+  +|+.+++++.+.|.+.++
T Consensus       305 ~~~----------------------------------~~~---~~~--------~~l~~~--~g~~l~~~~~~~~~~~~~  337 (600)
T PRK08279        305 QPP----------------------------------KPT---DRD--------HRLRLM--IGNGLRPDIWDEFQQRFG  337 (600)
T ss_pred             CCC----------------------------------Ccc---ccC--------cceeEE--ecCCCCHHHHHHHHHHhC
Confidence            210                                  000   000        266754  477799999999999887


Q ss_pred             C-ceeeecccccCCcceeeccCCCCcccCccccccC----CeEE---------EEeecCCCCccCCCCCCCCeEE--Eec
Q 010536          409 A-PLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMT----TVEA---------RLESVPEMGYDALSSVPRGEIC--LRG  472 (508)
Q Consensus       409 ~-~v~~~YG~TE~~~~~~~~~~~~~~~~~s~G~p~~----~~~~---------~i~d~~~~~~~~~~~~~~GEl~--v~g  472 (508)
                      . .+++.||+||++..+.. .   ....+++|++.+    +..+         .|.+ .++...+...|+.|||+  +.|
T Consensus       338 ~~~l~~~YG~tE~~~~~~~-~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~g~~Gel~~~i~~  412 (600)
T PRK08279        338 IPRILEFYAASEGNVGFIN-V---FNFDGTVGRVPLWLAHPYAIVKYDVDTGEPVRD-ADGRCIKVKPGEVGLLIGRITD  412 (600)
T ss_pred             cceeeeeecccccceeecc-c---CCCCcccccccccccccceeeeeccCcCceeeC-CCCccccCCCCCceeEEEEecC
Confidence            6 59999999998754332 1   123367787666    3333         2333 33333344566899998  779


Q ss_pred             CcccccccCCcccccccc-------cCCccccCcEEEEcCCCC
Q 010536          473 NTLFSGYYKRPDLTEEVI-------VDGWFHTGDIGEWQPMEL  508 (508)
Q Consensus       473 ~~v~~gY~~~~~~~~~~~-------~~gw~~TGDlg~~d~dG~  508 (508)
                      +.++.|| ++++.+.+.|       .++||+|||+|++|+||+
T Consensus       413 ~~~~~GY-~~~~~t~~~~~~~~~~~~~~~~~TGDlg~~~~dG~  454 (600)
T PRK08279        413 RGPFDGY-TDPEASEKKILRDVFKKGDAWFNTGDLMRDDGFGH  454 (600)
T ss_pred             ccccccc-CCchhhHHHHhhcccCCCCceEeecceEEEcCCcc
Confidence            9999999 8888877665       257999999999999985

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=1.4e-47  Score=471.30  Aligned_cols=382  Identities=18%  Similarity=0.204  Sum_probs=316.7

Q ss_pred             CCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHH
Q 010536           41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME  120 (508)
Q Consensus        41 ~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~l  120 (508)
                      ...++.++|.++++++|+++|+++.   ++      .+||+||.++++++|+.|.+.|+++|++|+|+++++++++++++
T Consensus      3718 ~~~~~~~~~~~~~~~~p~~~Av~~~---~~------~~tY~eL~~~~~~la~~L~~~gv~~~~~V~v~~~~s~~~~v~~l 3788 (4334)
T PRK05691       3718 LEQSYVRLFEAQVAAHPQRIAASCL---DQ------QWSYAELNRAANRLGHALRAAGVGVDQPVALLAERGLDLLGMIV 3788 (4334)
T ss_pred             cccCHHHHHHHHHHhCCCceEEEcC---CC------cccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence            4569999999999999999999976   53      69999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCC-CCccEEEEecCCCchhhhhhhhcCceee
Q 010536          121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCC-LYLKTIVSFANVSSSQKKEAEELGVSCF  199 (508)
Q Consensus       121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (508)
                      |++++|+++|||+|.++.+++.++++++++++++++............... .....++..+.                 
T Consensus      3789 avlkaG~a~vpld~~~p~~r~~~il~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 3851 (4334)
T PRK05691       3789 GSFKAGAGYLPLDPGLPAQRLQRIIELSRTPVLVCSAACREQARALLDELGCANRPRLLVWEE----------------- 3851 (4334)
T ss_pred             HHHhhCcEEeCCCCCChHHHHHHHHHhcCCCEEEecCcccchhhhhhcccccccccceeeecc-----------------
Confidence            999999999999999999999999999999999999875543322211100 00111111111                 


Q ss_pred             eHHHHHhcC-CCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHH
Q 010536          200 SWEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHI  278 (508)
Q Consensus       200 ~~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~  278 (508)
                          ..... ..........+++++||+|||||||.||||+++|+++++.+......+     .+..+++++...++++.
T Consensus      3852 ----~~~~~~~~~~~~~~~~~~~~ayvi~TSGSTG~PKGV~~~h~~~~~~~~~~~~~~-----~~~~~~~~~~~~s~~fd 3922 (4334)
T PRK05691       3852 ----VQAGEVASHNPGIYSGPDNLAYVIYTSGSTGLPKGVMVEQRGMLNNQLSKVPYL-----ALSEADVIAQTASQSFD 3922 (4334)
T ss_pred             ----cccccccccCCCCCCCCCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHHhc-----CCCccceEEEecCCchh
Confidence                10000 011122335678999999999999999999999999999998887776     78899999999999999


Q ss_pred             HHHHHHHHHHHcCcEEEEecC----CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhh
Q 010536          279 YDQIIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLG  354 (508)
Q Consensus       279 ~g~~~~~~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (508)
                      .++..++.++..|+++++.+.    ++..+++.++++++|++..+|++++.++.....                      
T Consensus      3923 ~s~~~~~~~l~~G~~l~i~~~~~~~~~~~l~~~~~~~~vt~~~~~Ps~~~~l~~~~~~---------------------- 3980 (4334)
T PRK05691       3923 ISVWQFLAAPLFGARVEIVPNAIAHDPQGLLAHVQAQGITVLESVPSLIQGMLAEDRQ---------------------- 3980 (4334)
T ss_pred             HHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhccc----------------------
Confidence            999989999999999998763    788999999999999999999999887542100                      


Q ss_pred             hhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhc-CCceeeecccccCCcceeeccCCCC-
Q 010536          355 NMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESCSGCFTSLADVF-  432 (508)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~~~-  432 (508)
                                        .+        ++||.+++||+++++++.+.|.+.+ +..++|.||+||++..++....... 
T Consensus      3981 ------------------~~--------~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~~~~~~~~~~ 4034 (4334)
T PRK05691       3981 ------------------AL--------DGLRWMLPTGEAMPPELARQWLQRYPQIGLVNAYGPAECSDDVAFFRVDLAS 4034 (4334)
T ss_pred             ------------------cC--------CCceEEEecCCcCCHHHHHHHHHhCCCCeEEeCccCccceeEEEEEEccccc
Confidence                              01        3799999999999999999998765 7899999999999987765443221 


Q ss_pred             --cccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCccccccccc--------CCccccCcEEE
Q 010536          433 --NMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV--------DGWFHTGDIGE  502 (508)
Q Consensus       433 --~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~~--------~gw~~TGDlg~  502 (508)
                        ....++|+|++++++.|+| ++++.+|.|  ..|||+|+|+.+++||+++|+.|.++|.        ++||||||+|+
T Consensus      4035 ~~~~~~~iG~p~~~~~~~v~d-~~~~~~p~g--~~GEL~i~G~~v~~GY~~~~~~t~~~f~~~p~~~~~~~~yrTGDl~~ 4111 (4334)
T PRK05691       4035 TRGSYLPIGSPTDNNRLYLLD-EALELVPLG--AVGELCVAGTGVGRGYVGDPLRTALAFVPHPFGAPGERLYRTGDLAR 4111 (4334)
T ss_pred             ccCCcCCCCCccCCCEEEEEC-CCCCCCCCC--CceEEEEecccccccccCCcccchhhcccCCCCCCCceeeccCccee
Confidence              1224699999999999999 888877766  8999999999999999999999999992        46999999999


Q ss_pred             EcCCCC
Q 010536          503 WQPMEL  508 (508)
Q Consensus       503 ~d~dG~  508 (508)
                      +++||+
T Consensus      4112 ~~~dG~ 4117 (4334)
T PRK05691       4112 RRSDGV 4117 (4334)
T ss_pred             ecCCCc
Confidence            999985

>PRK07787 acyl-CoA synthetase; Validated

Probab=100.00  E-value=7.3e-47  Score=387.39  Aligned_cols=353  Identities=25%  Similarity=0.347  Sum_probs=287.5

Q ss_pred             HHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHHHHHHcCCEEEec
Q 010536           53 AKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPL  132 (508)
Q Consensus        53 a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~lA~~~~G~~~v~l  132 (508)
                      +++.++++|+++.   +      +.+||+||.++++++|..|.     ++|+|+++++|+++++++++||+++|++++|+
T Consensus        10 ~~~~~~~~a~~~~---~------~~~Ty~el~~~~~~~a~~L~-----~~~~V~l~~~~~~~~~~~~la~~~~G~~~v~l   75 (471)
T PRK07787         10 AAAADIADAVRIG---G------RVLSRSDLAGAATAVAERVA-----GARRVAVLATPTLATVLAVVGALIAGVPVVPV   75 (471)
T ss_pred             hcccCCceEEEeC---C------cEEEHHHHHHHHHHHHHHhc-----cCCEEEEECCCCHHHHHHHHHHHhcCcEEeec
Confidence            4467889998765   3      57999999999999999996     47999999999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCceeeeHHHHHhcCCCCC
Q 010536          133 YDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDC  212 (508)
Q Consensus       133 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (508)
                      ++..+.+++..+++.+++++++++.....          ..+.........               ..+          .
T Consensus        76 ~~~~~~~~l~~~l~~~~~~~il~~~~~~~----------~~~~~~~~~~~~---------------~~~----------~  120 (471)
T PRK07787         76 PPDSGVAERRHILADSGAQAWLGPAPDDP----------AGLPHVPVRLHA---------------RSW----------H  120 (471)
T ss_pred             CCCCChHHHHHHHHhcCCCEEEecCCccc----------ccccceeeeccc---------------ccc----------c
Confidence            99999999999999999999999763110          001100000000               000          0


Q ss_pred             CCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHH-HHHHHHcC
Q 010536          213 ELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKG  291 (508)
Q Consensus       213 ~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~-~~~~l~~G  291 (508)
                      ......++++++++|||||||.||+|.++|+++...+......+     ....++++++.+|++|.+|++. ++.+++.|
T Consensus       121 ~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G  195 (471)
T PRK07787        121 RYPEPDPDAPALIVYTSGTTGPPKGVVLSRRAIAADLDALAEAW-----QWTADDVLVHGLPLFHVHGLVLGVLGPLRIG  195 (471)
T ss_pred             cCCCCCCCceEEEEECCCCCCCCCEEEEeHHHHHHHHHHHHHhc-----CCCccceeEeccCCeeechhHHHHHHHHhcC
Confidence            11123568999999999999999999999999999888776666     6778899999999999999885 77899999


Q ss_pred             cEEEEecC-CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhcCCCCCcchhhhH
Q 010536          292 CSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLD  370 (508)
Q Consensus       292 ~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (508)
                      +++++.+. ++..+++.++ +++|++.++|.++..+++...                                     . 
T Consensus       196 ~~~~~~~~~~~~~~~~~i~-~~~t~~~~~P~~~~~l~~~~~-------------------------------------~-  236 (471)
T PRK07787        196 NRFVHTGRPTPEAYAQALS-EGGTLYFGVPTVWSRIAADPE-------------------------------------A-  236 (471)
T ss_pred             CEEEecCCCCHHHHHHHHh-hCceEEEcchHHHHHHHhCcc-------------------------------------c-
Confidence            99988764 9999999999 999999999999998864100                                     0 


Q ss_pred             HHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCcceeeccCCCCcccCccccccCCeEEEEe
Q 010536          371 SLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLE  450 (508)
Q Consensus       371 ~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~s~G~p~~~~~~~i~  450 (508)
                      ...+        .++|.+++||+++++++.+++.+.++..+++.||+||++........ ....++++|+|+++++++|+
T Consensus       237 ~~~l--------~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~-~~~~~~~vG~~~~g~~~~i~  307 (471)
T PRK07787        237 ARAL--------RGARLLVSGSAALPVPVFDRLAALTGHRPVERYGMTETLITLSTRAD-GERRPGWVGLPLAGVETRLV  307 (471)
T ss_pred             cccc--------cceeEEEECCCCCCHHHHHHHHHHcCCCeecccCccccCcceecCCC-CcccCCcccccCCCcEEEEE
Confidence            0011        27999999999999999999999889999999999999865443332 23334789999999999999


Q ss_pred             ecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccc-cCCccccCcEEEEcCCCC
Q 010536          451 SVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGDIGEWQPMEL  508 (508)
Q Consensus       451 d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~-~~gw~~TGDlg~~d~dG~  508 (508)
                      | +++..++...++.|||+++|++++.||+++++.+.+.| .+|||+|||+|++|+||+
T Consensus       308 d-~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~t~~~~~~~~~~~TGDlg~~~~dg~  365 (471)
T PRK07787        308 D-EDGGPVPHDGETVGELQVRGPTLFDGYLNRPDATAAAFTADGWFRTGDVAVVDPDGM  365 (471)
T ss_pred             C-CCCCCCCCCCCCceEEEEECcccchhhcCChhhchhcccCCCceecCceEEEcCCCC
Confidence            9 77766653222489999999999999999999999888 489999999999999985

>PRK08162 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.8e-46  Score=390.35  Aligned_cols=401  Identities=23%  Similarity=0.295  Sum_probs=299.5

Q ss_pred             CCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHHHH
Q 010536           43 ESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC  122 (508)
Q Consensus        43 ~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~lA~  122 (508)
                      .++.+.|++.++.+|+++|+.+.   +      ..+||+||.+++.++|.+|.+.|+++||+|+++++|+++++++++||
T Consensus        18 ~~~~~~~~~~~~~~~~~~a~~~~---~------~~~ty~~L~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~   88 (545)
T PRK08162         18 LTPLSFLERAAEVYPDRPAVIHG---D------RRRTWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFGV   88 (545)
T ss_pred             CCHHHHHHHHHHHCCCCeEEEEC---C------eEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHH
Confidence            67889999999999999999765   3      47999999999999999999999999999999999999999999999


Q ss_pred             HHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCceeeeHH
Q 010536          123 NSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWE  202 (508)
Q Consensus       123 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (508)
                      +++|++++|+++..+.+++..+++.++++.++++......+.+..... ... ..+.+.......   .........+++
T Consensus        89 ~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~---~~~~~~~~~~~~  163 (545)
T PRK08162         89 PMAGAVLNTLNTRLDAASIAFMLRHGEAKVLIVDTEFAEVAREALALL-PGP-KPLVIDVDDPEY---PGGRFIGALDYE  163 (545)
T ss_pred             HHhCcEEeccccccChHHHHHHHHhCCCeEEEEccchhhHHHHHHhhC-CCC-ceEEEecCcccc---ccCCCcccccHH
Confidence            999999999999999999999999999999999988766654432211 111 122222111100   000011233566


Q ss_pred             HHHhcCCCCCCC-CCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHH
Q 010536          203 EFLQLGTLDCEL-PPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ  281 (508)
Q Consensus       203 ~~~~~~~~~~~~-~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~  281 (508)
                      ++.......... .+.+.+++++++|||||||.||+|.++|+++..........+     .+..++++++.+|++|.+++
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~-----~~~~~~~~l~~~pl~h~~~~  238 (545)
T PRK08162        164 AFLASGDPDFAWTLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAW-----GMPKHPVYLWTLPMFHCNGW  238 (545)
T ss_pred             HHhccCCccccccCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhc-----CCCCCCeeEeccCcHhhhhH
Confidence            665443211111 123446789999999999999999999998876665544333     56778899999999999998


Q ss_pred             HHHHHHHHcCcEEEEe-cCCHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhcCC
Q 010536          282 IIETHCIHKGCSIGFW-RGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGM  360 (508)
Q Consensus       282 ~~~~~~l~~G~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (508)
                      ...+...+.|+..++. ..++..+++.++++++|++.++|.+++.|++.....                           
T Consensus       239 ~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~---------------------------  291 (545)
T PRK08162        239 CFPWTVAARAGTNVCLRKVDPKLIFDLIREHGVTHYCGAPIVLSALINAPAEW---------------------------  291 (545)
T ss_pred             HHHHHHHHHccEEEEeCCCCHHHHHHHHHHcCCeEEEechHHHHHHHhCcccc---------------------------
Confidence            7644433444444444 459999999999999999999999999986521100                           


Q ss_pred             CCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCcceeeccCCC---------
Q 010536          361 PQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADV---------  431 (508)
Q Consensus       361 ~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~---------  431 (508)
                                ...+        .+.+.++++|+.+++++.+.+++. +.++++.||+||+++.+.......         
T Consensus       292 ----------~~~~--------~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~  352 (545)
T PRK08162        292 ----------RAGI--------DHPVHAMVAGAAPPAAVIAKMEEI-GFDLTHVYGLTETYGPATVCAWQPEWDALPLDE  352 (545)
T ss_pred             ----------ccCC--------ccceEEEECCCCCCHHHHHHHHHh-CCceeecccccccCcceeecccccccccCCccc
Confidence                      0000        134566889999999999998874 899999999999876555432110         


Q ss_pred             -CcccCccccccCC-eEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccccCCccccCcEEEEcCCCC
Q 010536          432 -FNMIGTVGVPMTT-VEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQPMEL  508 (508)
Q Consensus       432 -~~~~~s~G~p~~~-~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDlg~~d~dG~  508 (508)
                       ....++.|.+++. ..++|+|.+++..++.+.++.|||+|+|+.++.||+++++.+.+.|.+|||+|||+|++|+||+
T Consensus       353 ~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~g~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGDl~~~d~dg~  431 (545)
T PRK08162        353 RAQLKARQGVRYPLQEGVTVLDPDTMQPVPADGETIGEIMFRGNIVMKGYLKNPKATEEAFAGGWFHTGDLAVLHPDGY  431 (545)
T ss_pred             hhhccCCCCcccCCcceEEEEcCCCCcccCCCCCceeEEEEecCcchhhhcCChhhhHHHhhCCCcccCceEEEcCCcc
Confidence             0112456777653 4578888334444443222469999999999999999999999999999999999999999985

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=100.00  E-value=9.7e-47  Score=425.56  Aligned_cols=392  Identities=20%  Similarity=0.239  Sum_probs=302.4

Q ss_pred             CCCCCHHHHHHHHHHhCC-CCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHH
Q 010536           40 AGLESPWQFFCDSAKRIP-NNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIA  118 (508)
Q Consensus        40 ~~~~ti~~~l~~~a~~~p-~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~  118 (508)
                      +...++.+.+.+.++++| ++.++.+.   ++     +.+||+||.++++++|++|++ |+++||+|+++++|+++++++
T Consensus       628 ~~~~~~~~~l~~~~~~~~~~~~ai~~~---~~-----~~~Ty~el~~~~~~lA~~L~~-g~~~gd~V~i~~~n~~~~~~~  698 (1140)
T PRK06814        628 DYDRTLFEALIEAAKIHGFKKLAVEDP---VN-----GPLTYRKLLTGAFVLGRKLKK-NTPPGENVGVMLPNANGAAVT  698 (1140)
T ss_pred             cccCCHHHHHHHHHHHcCCCCeEeECC---CC-----CccCHHHHHHHHHHHHHHHHh-cCCCCCeEEEEcCCchHHHHH
Confidence            445778899999999987 45666543   22     579999999999999999975 999999999999999999999


Q ss_pred             HHHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHh-hcCccCCCCccEEEEecCCCchhhhhhhhcCce
Q 010536          119 MEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSIL-SCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS  197 (508)
Q Consensus       119 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (508)
                      ++||+++|++++|+||..+.+++.+++++++++++|+++....... ............++.+++.....        ..
T Consensus       699 ~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~  770 (1140)
T PRK06814        699 FFALQSAGRVPAMINFSAGIANILSACKAAQVKTVLTSRAFIEKARLGPLIEALEFGIRIIYLEDVRAQI--------GL  770 (1140)
T ss_pred             HHHHHHCCCEEEEcCCCCCHHHHHHHHHHcCCCEEEecHHHHhhhcchhHHHHhccCceEEEehHhhccC--------Ch
Confidence            9999999999999999999999999999999999999875433210 00000011122344433211000        00


Q ss_pred             eeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHH
Q 010536          198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAH  277 (508)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~  277 (508)
                      ...+++...............++++++++|||||||.||||.++|+++...+......+     ....+|++++.+|++|
T Consensus       771 ~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~-----~~~~~d~~l~~~pl~h  845 (1140)
T PRK06814        771 ADKIKGLLAGRFPLVYFCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARI-----DFSPEDKVFNALPVFH  845 (1140)
T ss_pred             HHHHHHHhhccCCccccCCCCCCCcEEEEECCCccCCCcEEEecHHHHHHHHHHHHHhh-----CCCCcCEEEEecchHH
Confidence            00111211111111111135678999999999999999999999999998888877666     6788999999999999


Q ss_pred             HHHHH-HHHHHHHcCcEEEEecC--CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhh
Q 010536          278 IYDQI-IETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLG  354 (508)
Q Consensus       278 ~~g~~-~~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (508)
                      .+++. ..+.++..|+++++.+.  +...+.+.++++++|++.++|++++.+.+..                        
T Consensus       846 ~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~------------------------  901 (1140)
T PRK06814        846 SFGLTGGLVLPLLSGVKVFLYPSPLHYRIIPELIYDTNATILFGTDTFLNGYARYA------------------------  901 (1140)
T ss_pred             HHHHHHHHHHHHHcCCEEEEecCcccHHHHHHHHHhcCCEEEEecHHHHHHHHhhc------------------------
Confidence            99985 47789999999998864  6778899999999999999999998875420                        


Q ss_pred             hhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCcceeeccCCCCcc
Q 010536          355 NMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNM  434 (508)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~  434 (508)
                                     +..++        +++|.+++||+++++++.+.+.+.++.++++.||+||++..+....... ..
T Consensus       902 ---------------~~~~~--------~~lr~v~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~-~~  957 (1140)
T PRK06814        902 ---------------HPYDF--------RSLRYVFAGAEKVKEETRQTWMEKFGIRILEGYGVTETAPVIALNTPMH-NK  957 (1140)
T ss_pred             ---------------ccccc--------cceeEEEEcCCcCCHHHHHHHHHHhCCcEEeccccccccceEEecCCCC-CC
Confidence                           00111        3899999999999999999999999999999999999988766554333 33


Q ss_pred             cCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCccccc-ccccCCccccCcEEEEcCCCC
Q 010536          435 IGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTE-EVIVDGWFHTGDIGEWQPMEL  508 (508)
Q Consensus       435 ~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~-~~~~~gw~~TGDlg~~d~dG~  508 (508)
                      .+++|+|+|++++++.+ .++      .++.|||+++|++++.||+++++... +...+|||+|||+|++|+||+
T Consensus       958 ~~~vG~p~~g~~~~~~~-~~~------~~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~ 1025 (1140)
T PRK06814        958 AGTVGRLLPGIEYRLEP-VPG------IDEGGRLFVRGPNVMLGYLRAENPGVLEPPADGWYDTGDIVTIDEEGF 1025 (1140)
T ss_pred             CCcCCccCCCCeEEEee-cCC------CCCceEEEEeCCCcchhhcCCCCCCccccCCCCeEecCCEEEECCCCe
Confidence            48999999999999988 332      23789999999999999998765332 223689999999999999985

>PRK09192 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.7e-47  Score=398.36  Aligned_cols=394  Identities=20%  Similarity=0.246  Sum_probs=299.3

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcH
Q 010536           34 GLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCP  113 (508)
Q Consensus        34 ~~~~~~~~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~  113 (508)
                      +++....+..++.++|...++.+|+..++ +     ..+..++.+||.||.+++.++|.+|.++|+++||+|+++++|++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~Ty~eL~~~~~~~a~~L~~~gi~~gd~V~l~~~n~~   85 (579)
T PRK09192         12 SLPRRYADFPTLVEALDYAALGEAGMNFY-D-----RRGQLEEALPYQTLRARAEAGARRLLALGLKPGDRVALIAETDG   85 (579)
T ss_pred             cccccccchhhHHHHHHHhhccCCceEEE-e-----cCCCEEEEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCch
Confidence            34444466789999999999998866554 3     22233478999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHcCCEEEeccCCCC-------HHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCch
Q 010536          114 EWIIAMEACNSQAITYVPLYDTLG-------ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSS  186 (508)
Q Consensus       114 ~~~~~~lA~~~~G~~~v~l~~~~~-------~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (508)
                      +++++++||+++|++++|+++..+       .+++..+++.++++++|+++.....+.+....    ....+.       
T Consensus        86 ~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~~~~l~~~i~~~~~~~il~~~~~~~~~~~~~~~----~~~~~~-------  154 (579)
T PRK09192         86 DFVEAFFACQYAGLVPVPLPLPMGFGGRESYIAQLRGMLASAQPAAIITPDELLPWVNEATHG----NPLLHV-------  154 (579)
T ss_pred             hHHHHHHHHHHcCCeeEeccCCcccccchHHHHHHHHHHHhcCCCEEEeChHHHHHHHHhhcc----ccccce-------
Confidence            999999999999999999987543       68999999999999999988766554432211    011111       


Q ss_pred             hhhhhhhcCceeeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhh-hhhhccccCCC
Q 010536          187 QKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQ-MFVVTGKVCSE  265 (508)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~-~~~~~~~~~~~  265 (508)
                                  ..++++...............+++++++|||||||.||+|.++|+++...+..... .+     ....
T Consensus       155 ------------~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~-----~~~~  217 (579)
T PRK09192        155 ------------LSHAWFKALPEADVALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGL-----KVRP  217 (579)
T ss_pred             ------------eehhhhcccCCCccccCCCCCCCeEEEEecCCCCCCCceEEeeHHHHHHHHHHHHhhcc-----cCCC
Confidence                        12222222111111222346689999999999999999999999999988877665 44     6788


Q ss_pred             CcEEEEecChHHHHHHHH-HHHHHHcCcEEEEecC-----CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCCh
Q 010536          266 EDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGA  339 (508)
Q Consensus       266 ~~~~l~~~pl~~~~g~~~-~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~  339 (508)
                      +|++++.+|++|.+++.. ++.++..|+++++...     ++..+++.+.++++++++..|..+..+.....        
T Consensus       218 ~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~l~~~~~~--------  289 (579)
T PRK09192        218 GDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLPTRDFARRPLQWLDLISRNRGTISYSPPFGYELCARRVN--------  289 (579)
T ss_pred             CCeEEEeCCCCCcchhHHHHHHHHHhCCeeEeeCHHHHHHCHHHHHHHHHhcCcEEEeCCcHHHHHHHHhhc--------
Confidence            999999999999999884 5667889998877652     68899999999999987765544444322100        


Q ss_pred             hHHHHHHHHHHHHhhhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcC------Cceee
Q 010536          340 LSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG------APLTQ  413 (508)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~------~~v~~  413 (508)
                                                .......+++        ++|.+++||+++++++.+.+.+.++      ..+++
T Consensus       290 --------------------------~~~~~~~~l~--------~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~  335 (579)
T PRK09192        290 --------------------------SKDLAELDLS--------CWRVAGIGADMIRPDVLHQFAEAFAPAGFDDKAFMP  335 (579)
T ss_pred             --------------------------cccccccchh--------hhheeEecCccCCHHHHHHHHHHHHhcCCChhhccc
Confidence                                      0001122333        7899999999999999999988763      35999


Q ss_pred             ecccccCCcceeeccCCCC---------------------------cccCccccccCCeEEEEeecCCCCccCCCCCCCC
Q 010536          414 GYGLTESCSGCFTSLADVF---------------------------NMIGTVGVPMTTVEARLESVPEMGYDALSSVPRG  466 (508)
Q Consensus       414 ~YG~TE~~~~~~~~~~~~~---------------------------~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~G  466 (508)
                      .||+||+++.++.......                           ...+++|+|+|+++++|+| +++..++.  ++.|
T Consensus       336 ~yG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~p~~~v~i~d-~~~~~~~~--g~~G  412 (579)
T PRK09192        336 SYGLAEATLAVSFSPLGSGIVVEEVDRDRLEYQGKAVAPGAETRRVRTFVNCGKALPGHEIEIRN-EAGMPLPE--RVVG  412 (579)
T ss_pred             ccccccceeEEeccCCCCCceEEEEcHHHhcCCceeeccCCCCccceeEeecCCcCCCcEEEEEC-CCCCCCCC--CCEE
Confidence            9999999876654332110                           0125789999999999999 77766654  4899


Q ss_pred             eEEEecCcccccccCCcccccccc-cCCccccCcEEEEcCCCC
Q 010536          467 EICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGDIGEWQPMEL  508 (508)
Q Consensus       467 El~v~g~~v~~gY~~~~~~~~~~~-~~gw~~TGDlg~~d~dG~  508 (508)
                      ||+++|+.++.||+++ +.+.+.+ .+|||+|||+|++ ++|+
T Consensus       413 el~i~g~~~~~gY~~~-~~~~~~~~~dgw~~TGDlg~~-~~G~  453 (579)
T PRK09192        413 HICVRGPSLMSGYFRD-EESQDVLAADGWLDTGDLGYL-LDGY  453 (579)
T ss_pred             EEEecCCchhhhhcCC-ccccccccCCceeeccceeeE-ECCE
Confidence            9999999999999999 5555555 7899999999999 7874

>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

Probab=100.00  E-value=3.1e-46  Score=386.50  Aligned_cols=376  Identities=19%  Similarity=0.214  Sum_probs=304.0

Q ss_pred             CCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHHHH
Q 010536           43 ESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC  122 (508)
Q Consensus        43 ~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~lA~  122 (508)
                      .++.++|+++++.+|+++++.+.   +      +.+||.||.++++++|.+|.+.|+++|++|+++++|+.+++++++||
T Consensus         2 ~~~~~~l~~~a~~~p~~~~~~~~---~------~~~t~~~l~~~~~~~a~~l~~~g~~~~~~v~~~~~~~~~~~~~~~a~   72 (503)
T PRK04813          2 MDIIETIEEFAQTQPDFPAYDYL---G------EKLTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPEMLATFLGA   72 (503)
T ss_pred             chHHHHHHHHHHhCCCceEEEeC---C------cEEeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence            57889999999999999998764   3      47999999999999999999999999999999999999999999999


Q ss_pred             HHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCceeeeHH
Q 010536          123 NSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWE  202 (508)
Q Consensus       123 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (508)
                      +++|++++|+++.++.+++..+++..+++++++++......        ..+ ..+...                  .+.
T Consensus        73 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~-~~~~~~------------------~~~  125 (503)
T PRK04813         73 VKAGHAYIPVDVSSPAERIEMIIEVAKPSLIIATEELPLEI--------LGI-PVITLD------------------ELK  125 (503)
T ss_pred             HHcCCEEecCCCCChHHHHHHHHHhcCCCEEEecccccccc--------cCC-cEEehH------------------Hhh
Confidence            99999999999999999999999999999999987641100        000 011110                  111


Q ss_pred             HHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHH
Q 010536          203 EFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQI  282 (508)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~  282 (508)
                      +................+++++++|||||||.||+|.++|+++...+......+     .+..++++++..|++|..++.
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~~~~  200 (503)
T PRK04813        126 DIFATGNPYDFDHAVKGDDNYYIIFTSGTTGKPKGVQISHDNLVSFTNWMLEDF-----ALPEGPQFLNQAPYSFDLSVM  200 (503)
T ss_pred             hhhhccccccccccCCCCCcEEEEECCCCCCCCcEEEeehHHHHHHHHHHHHHc-----CCCcCceeeecCCcchhHhHH
Confidence            111111111112234668899999999999999999999999998888766655     677899999999999999988


Q ss_pred             HHHHHHHcCcEEEEecC----CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhc
Q 010536          283 IETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKK  358 (508)
Q Consensus       283 ~~~~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (508)
                      ..+.++..|+++++.+.    ++..+++.+++++++++..+|++++.++....                           
T Consensus       201 ~~~~~l~~g~~~v~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~---------------------------  253 (503)
T PRK04813        201 DLYPTLASGGTLVALPKDMTANFKQLFETLPQLPINVWVSTPSFADMCLLDPS---------------------------  253 (503)
T ss_pred             HHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCeEEEeChHHHHHHHHhhc---------------------------
Confidence            88889999999988763    78999999999999999999999987643110                           


Q ss_pred             CCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhc-CCceeeecccccCCcceeeccCCC----Cc
Q 010536          359 GMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESCSGCFTSLADV----FN  433 (508)
Q Consensus       359 ~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~~----~~  433 (508)
                                ....++        +++|.++++|+++++.+.+++.+.+ +..+++.||+||++..++......    ..
T Consensus       254 ----------~~~~~~--------~~l~~i~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~  315 (503)
T PRK04813        254 ----------FNEEHL--------PNLTHFLFCGEELPHKTAKKLLERFPSATIYNTYGPTEATVAVTSIEITDEMLDQY  315 (503)
T ss_pred             ----------cCcccC--------CCceEEEEecCcCCHHHHHHHHHHCCCceEEeCcccchheeEEEEEEecccccccC
Confidence                      000111        3799999999999999999999988 789999999999976554332211    12


Q ss_pred             ccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCccccccccc--C--CccccCcEEEEcCCCC
Q 010536          434 MIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV--D--GWFHTGDIGEWQPMEL  508 (508)
Q Consensus       434 ~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~~--~--gw~~TGDlg~~d~dG~  508 (508)
                      ...++|++.++++++|+| +++..++.+  +.|||+++|+.++.||+++++.+.+.|.  +  +||+|||+|++ ++|+
T Consensus       316 ~~~~~g~~~~~~~~~i~d-~~~~~~~~g--~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~g~~~~~tGD~~~~-~~g~  390 (503)
T PRK04813        316 KRLPIGYAKPDSPLLIID-EEGTKLPDG--EQGEIVISGPSVSKGYLNNPEKTAEAFFTFDGQPAYHTGDAGYL-EDGL  390 (503)
T ss_pred             CCCcccccCCCCEEEEEC-CCCCCCCCC--CceEEEEeccccccccCCChhHhHHhhccCCCceeEECCceEEe-eCCe
Confidence            235799999999999999 777766544  8999999999999999999999888772  3  49999999999 7774

>PRK13391 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=4e-46  Score=386.01  Aligned_cols=387  Identities=20%  Similarity=0.222  Sum_probs=300.8

Q ss_pred             HHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHHHHHHcCCE
Q 010536           49 FCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAIT  128 (508)
Q Consensus        49 l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~lA~~~~G~~  128 (508)
                      ....++++|+++|+++.   ++.    +.+||+||.++++++|++|.+.|+++|++|+++++|+++++++++||+++|++
T Consensus         3 ~~~~a~~~p~~~a~~~~---~~~----~~~ty~~l~~~~~~la~~L~~~g~~~~~~V~v~~~~~~~~~~~~~a~~~~G~~   75 (511)
T PRK13391          3 PGIHAQTTPDKPAVIMA---STG----EVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLY   75 (511)
T ss_pred             hhhhHhhCCCceEEEec---CCC----CEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhccE
Confidence            34678889999999864   332    57999999999999999999999999999999999999999999999999999


Q ss_pred             EEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCceeeeHHHHHhcC
Q 010536          129 YVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLG  208 (508)
Q Consensus       129 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (508)
                      ++++++.++.+++.++++.++++.++++......+.+.... .......+.+......         .....+++.....
T Consensus        76 ~~~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~  145 (511)
T PRK13391         76 YTCVNSHLTPAEAAYIVDDSGARALITSAAKLDVARALLKQ-CPGVRHRLVLDGDGEL---------EGFVGYAEAVAGL  145 (511)
T ss_pred             EeccccccCHHHHHHHHhccCCcEEEEchhhHHHHHHHHhc-CCCceEEEEecCCCCC---------cccccHHHHhcCC
Confidence            99999999999999999999999999998776554433322 2233333333321110         1122344433221


Q ss_pred             CCCCCCCCCCCCCeEEEEecCCCCCCcceeec--chHHHHHHH---hhhhhhhhhccccCCCCcEEEEecChHHHHHHHH
Q 010536          209 TLDCELPPKKKTNISTIMYTSGTTGEPKGVVL--TNQAIVAEV---LSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII  283 (508)
Q Consensus       209 ~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~--sh~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~  283 (508)
                        + .....+.++.++++|||||||.||+|.+  +|.++....   ......+     .+..++++++.+|++|.+++..
T Consensus       146 --~-~~~~~~~~~~a~il~TSGtTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~h~~~~~~  217 (511)
T PRK13391        146 --P-ATPIADESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQRLW-----GFRSDMVYLSPAPLYHSAPQRA  217 (511)
T ss_pred             --C-CCCCCCcccccEEEECCCCCCCCCEEEEccccchhhhhhHHHHHHHHhc-----CCCCCCeEEEcCCHHHHHHHHH
Confidence              1 1111234567899999999999999995  466654332   2222222     5678899999999999999888


Q ss_pred             HHHHHHcCcEEEEecC-CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhcCCCC
Q 010536          284 ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQ  362 (508)
Q Consensus       284 ~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (508)
                      .+.++..|+++++.+. ++..+++.++++++|++.++|+++..+++.....                             
T Consensus       218 ~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~-----------------------------  268 (511)
T PRK13391        218 VMLVIRLGGTVIVMEHFDAEQYLALIEEYGVTHTQLVPTMFSRMLKLPEEV-----------------------------  268 (511)
T ss_pred             HHHHHHcCceEEECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCchhh-----------------------------
Confidence            7889999999998874 9999999999999999999999998875421100                             


Q ss_pred             CcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCcceeeccCCCCcccCcccccc
Q 010536          363 NKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPM  442 (508)
Q Consensus       363 ~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~s~G~p~  442 (508)
                            .+..++        .++|.+++||+++++++.+++++.+|..+++.||+||++.++...........+++|+|+
T Consensus       269 ------~~~~~~--------~~l~~~~~gg~~~~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~~~~vG~~~  334 (511)
T PRK13391        269 ------RDKYDL--------SSLEVAIHAAAPCPPQVKEQMIDWWGPIIHEYYAATEGLGFTACDSEEWLAHPGTVGRAM  334 (511)
T ss_pred             ------cccCCc--------cceeEEEEccCCCCHHHHHHHHHHcCCceeeeeccccccceEEecCccccccCCCcCCcc
Confidence                  001112        289999999999999999999998899999999999998776544333334457999999


Q ss_pred             CCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccc-c-CCccccCcEEEEcCCCC
Q 010536          443 TTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-V-DGWFHTGDIGEWQPMEL  508 (508)
Q Consensus       443 ~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~-~-~gw~~TGDlg~~d~dG~  508 (508)
                      ++ .++|+| +++...+.  |+.|||+++|+ ++.||+++++.+.+.| . ++||+|||+|++|+||+
T Consensus       335 ~g-~~~i~d-~~~~~~~~--g~~Gel~~~g~-~~~gy~~~~~~~~~~~~~~~~w~~TGD~g~~~~~g~  397 (511)
T PRK13391        335 FG-DLHILD-DDGAELPP--GEPGTIWFEGG-RPFEYLNDPAKTAEARHPDGTWSTVGDIGYVDEDGY  397 (511)
T ss_pred             cc-eEEEEC-CCCCCCCC--CCceEEEEecC-cceEEcCChhHhHHhhccCCCEEecCCEEEECCCcc
Confidence            99 689998 77765554  48999999999 8899999999888877 3 48999999999999984

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=4.9e-47  Score=466.63  Aligned_cols=378  Identities=20%  Similarity=0.292  Sum_probs=313.6

Q ss_pred             CCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHH
Q 010536           41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME  120 (508)
Q Consensus        41 ~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~l  120 (508)
                      ...++.++|+++++++|+++|+++.   +      +.+||+||.++++++|++|.+.|+++|++|+++++++++++++++
T Consensus      1129 ~~~~l~~~~~~~a~~~p~~~Al~~~---~------~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~s~~~iv~~l 1199 (4334)
T PRK05691       1129 AQAWLPELLNEQARQTPERIALVWD---G------GSLDYAELHAQANRLAHYLRDKGVGPDVCVAIAAERSPQLLVGLL 1199 (4334)
T ss_pred             ccCCHHHHHHHHHHhCCCCeEEEEC---C------ceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence            3468999999999999999999876   4      369999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCceeee
Q 010536          121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFS  200 (508)
Q Consensus       121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (508)
                      |++++|++++|++|..+.+++.++++.++++++|++......+....     .. ..+.++...                
T Consensus      1200 ailkaG~~~vpld~~~p~~rl~~il~~~~~~~vi~~~~~~~~~~~~~-----~~-~~~~~~~~~---------------- 1257 (4334)
T PRK05691       1200 AILKAGGAYVPLDPDYPAERLAYMLADSGVELLLTQSHLLERLPQAE-----GV-SAIALDSLH---------------- 1257 (4334)
T ss_pred             HHHHhCCEEEecCcCChHHHHHHHHHhcCCCEEEecchhhhhccccc-----Cc-eEEeecccc----------------
Confidence            99999999999999999999999999999999999876544321110     00 111111100                


Q ss_pred             HHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHH
Q 010536          201 WEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD  280 (508)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g  280 (508)
                      ...    ...........++++++++|||||||.||||.++|+++...+......+     .+.+++++++..|++|..+
T Consensus      1258 ~~~----~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~~fd~s 1328 (4334)
T PRK05691       1258 LDS----WPSQAPGLHLHGDNLAYVIYTSGSTGQPKGVGNTHAALAERLQWMQATY-----ALDDSDVLMQKAPISFDVS 1328 (4334)
T ss_pred             ccc----cCCCCCCCCCCCCCeEEEEEcCCCCCCCceeEeecHHHHHHHHHHHHhc-----CCCCCCEEEEeCCccHHHH
Confidence            000    0001112234678999999999999999999999999999988877766     7889999999999999999


Q ss_pred             HHHHHHHHHcCcEEEEec----CCHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhh
Q 010536          281 QIIETHCIHKGCSIGFWR----GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNM  356 (508)
Q Consensus       281 ~~~~~~~l~~G~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (508)
                      +..++.++..|+++++.+    .++..+++.++++++|++.++|++++.+++...                         
T Consensus      1329 ~~~~~~~L~~G~~l~i~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~------------------------- 1383 (4334)
T PRK05691       1329 VWECFWPLITGCRLVLAGPGEHRDPQRIAELVQQYGVTTLHFVPPLLQLFIDEPL------------------------- 1383 (4334)
T ss_pred             HHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEECcHHHHHHHHhCcc-------------------------
Confidence            888899999999999975    288999999999999999999999998754110                         


Q ss_pred             hcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhc-CCceeeecccccCCcceeeccC-CCCcc
Q 010536          357 KKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESCSGCFTSLA-DVFNM  434 (508)
Q Consensus       357 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~-~~~~~  434 (508)
                                    ..++        +++|.+++||+++++++.++|.+.+ +..++|.||+||+++.++.... .....
T Consensus      1384 --------------~~~~--------~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~ 1441 (4334)
T PRK05691       1384 --------------AAAC--------TSLRRLFSGGEALPAELRNRVLQRLPQVQLHNRYGPTETAINVTHWQCQAEDGE 1441 (4334)
T ss_pred             --------------cccC--------CcccEEEEeecCCCHHHHHHHHHhCCCcEEEeCCCcChheeeeeeeecccccCC
Confidence                          0011        3899999999999999999998877 6899999999999877664332 22223


Q ss_pred             cCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCccccccccc--------CCccccCcEEEEcCC
Q 010536          435 IGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV--------DGWFHTGDIGEWQPM  506 (508)
Q Consensus       435 ~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~~--------~gw~~TGDlg~~d~d  506 (508)
                      ..++|+|+++++++|+| ++++.+|.|  +.|||+|+|+++++||+++|+.+.+.|.        ++||+|||+|++++|
T Consensus      1442 ~~~iG~p~~~~~~~i~d-~~~~~vp~G--~~GEL~i~G~~v~~GYl~~p~~t~~~f~~~p~~~~~~r~yrTGDl~~~~~d 1518 (4334)
T PRK05691       1442 RSPIGRPLGNVLCRVLD-AELNLLPPG--VAGELCIGGAGLARGYLGRPALTAERFVPDPLGEDGARLYRTGDRARWNAD 1518 (4334)
T ss_pred             CCcccceeCCCEEEEEC-CCCCCCCCC--CceEEEecCcccchhhcCCccccHhhCCCCCCCCCCceEEEccceEEECCC
Confidence            47899999999999999 888777665  8999999999999999999999999883        249999999999999


Q ss_pred             CC
Q 010536          507 EL  508 (508)
Q Consensus       507 G~  508 (508)
                      |+
T Consensus      1519 G~ 1520 (4334)
T PRK05691       1519 GA 1520 (4334)
T ss_pred             CC
Confidence            85

>PRK05850 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.7e-46  Score=393.03  Aligned_cols=394  Identities=18%  Similarity=0.248  Sum_probs=288.5

Q ss_pred             CHHHHHHHHHHhCCCCCceeeeeccCC---CCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHH
Q 010536           44 SPWQFFCDSAKRIPNNQMLGGRKVSDG---KVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME  120 (508)
Q Consensus        44 ti~~~l~~~a~~~p~~~a~~~~~~~~~---~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~l  120 (508)
                      ++.++|++++..+|+++|+++.   +.   ..+..+.+||.||.++++++|++|.+.| ++||+|+++++|+++++++++
T Consensus         2 s~~~~l~~~a~~~p~~~a~~~~---~~~~~~~~~~~~lty~eL~~~v~~~A~~L~~~g-~~gd~V~l~~~n~~~~~~~~l   77 (578)
T PRK05850          2 SVPSLLRERASLQPDDAAFTFI---DYEQDPAGVAETLTWSQLYRRTLNVAEELRRHG-STGDRAVILAPQGLEYIVAFL   77 (578)
T ss_pred             cHHHHHHHHHhcCCCceEEEEE---ccCCCCCCceeeecHHHHHHHHHHHHHHHHHhC-CCCCEEEEEcCCcccHHHHHH
Confidence            6789999999999999999875   31   1122368999999999999999999999 689999999999999999999


Q ss_pred             HHHHcCCEEEeccC---CCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccC-CCCccEEEEecCCCchhhhhhhhcCc
Q 010536          121 ACNSQAITYVPLYD---TLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRC-CLYLKTIVSFANVSSSQKKEAEELGV  196 (508)
Q Consensus       121 A~~~~G~~~v~l~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (508)
                      ||+++|++++|+++   ..+.+++.++++.+++++++++++....+.+..... ......++..+..             
T Consensus        78 A~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------  144 (578)
T PRK05850         78 GALQAGLIAVPLSVPQGGAHDERVSAVLRDTSPSVVLTTSAVVDDVTEYVAPQPGQSAPPVIEVDLL-------------  144 (578)
T ss_pred             HHHHcCceEEecCCCCccchHHHHHHHHHhcCCCEEEEcHHHHHHHHHHHhhcccccccceEeeccc-------------
Confidence            99999999999997   457889999999999999999987666554322110 0011112211100             


Q ss_pred             eeeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhh-hccccCCCCcEEEEecCh
Q 010536          197 SCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV-VTGKVCSEEDTYFSFLPL  275 (508)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~pl  275 (508)
                            ++...  ..........+++++++|||||||.||||.++|++++.++......+. ........++++++.+|+
T Consensus       145 ------~~~~~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl  216 (578)
T PRK05850        145 ------DLDSP--RGSDARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDTTVVSWLPF  216 (578)
T ss_pred             ------ccccC--CccccCCCCCCCeEEEEeCCCCCCCCceEEEeHHHHHHHHHHHHHhhccccccCCCCcceEEEECCC
Confidence                  00000  001112345689999999999999999999999999988766543321 101113567899999999


Q ss_pred             HHHHHHHH-HHHHHHcCcEEEEecC-----CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHH
Q 010536          276 AHIYDQII-ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAY  349 (508)
Q Consensus       276 ~~~~g~~~-~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  349 (508)
                      +|.+|+.. .+.+++.|+++++.+.     ++..+++.+++++++++ .+|.++..++.....                 
T Consensus       217 ~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~-~~p~~~~~~~~~~~~-----------------  278 (578)
T PRK05850        217 YHDMGLVLGVCAPILGGCPAVLTSPVAFLQRPARWMQLLASNPHAFS-AAPNFAFELAVRKTS-----------------  278 (578)
T ss_pred             CCCchhHHHHHHHHhcCCcEEEeCHHHHHHCHHHHHHHHHHcCCeEE-eCCcHHHHHHHHhcc-----------------
Confidence            99999874 7889999999998863     68999999999999865 566654443221000                 


Q ss_pred             HHHhhhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcC------CceeeecccccCCcc
Q 010536          350 NYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG------APLTQGYGLTESCSG  423 (508)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~------~~v~~~YG~TE~~~~  423 (508)
                                      ......++++        ++|.+++||+++++++.++|.+.++      ..+++.||+||++..
T Consensus       279 ----------------~~~~~~~~~~--------~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~  334 (578)
T PRK05850        279 ----------------DDDMAGLDLG--------GVLGIISGSERVHPATLKRFADRFAPFNLRETAIRPSYGLAEATVY  334 (578)
T ss_pred             ----------------hhhhcCcchh--------hheeEEECcCCCCHHHHHHHHHHHHhcCcCcccccCccchhhhhhh
Confidence                            0001111222        7899999999999999999988763      369999999998765


Q ss_pred             eeeccCCCC------------------------cccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccc
Q 010536          424 CFTSLADVF------------------------NMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGY  479 (508)
Q Consensus       424 ~~~~~~~~~------------------------~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY  479 (508)
                      +........                        ....++|.|. +.+++|+|.+++..++  .|+.|||+|+|+.++.||
T Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~g~p~-~~~~~ivd~~~~~~~~--~g~~Gel~v~g~~~~~gY  411 (578)
T PRK05850        335 VATREPGQPPESVRFDYEKLSAGHAKRCETGGGTPLVSYGSPR-SPTVRIVDPDTCIECP--AGTVGEIWVHGDNVAAGY  411 (578)
T ss_pred             eeccCCCCCceEEEECHHHHhCCceEecCCCCCceEEeccCCC-CCEEEEEcCCCCcCCC--CCCEEEEEEecCcccccc
Confidence            543221110                        0011345553 5789999933344444  458999999999999999


Q ss_pred             cCCccccccccc------------CCccccCcEEEEcCCCC
Q 010536          480 YKRPDLTEEVIV------------DGWFHTGDIGEWQPMEL  508 (508)
Q Consensus       480 ~~~~~~~~~~~~------------~gw~~TGDlg~~d~dG~  508 (508)
                      +++++.+.+.|.            +|||+|||+|++| ||+
T Consensus       412 ~~~~~~t~~~f~~~~~~~~~~~~~~~w~~TGDl~~~~-~G~  451 (578)
T PRK05850        412 WQKPEETERTFGATLVDPSPGTPEGPWLRTGDLGFIS-EGE  451 (578)
T ss_pred             cCChhhhHHHhhcccccccccCCCCCeeeccceeeEE-CCE
Confidence            999999998883            4799999999998 774

>TIGR01733 AA-adenyl-dom amino acid adenylation domain

Probab=100.00  E-value=1.6e-45  Score=370.86  Aligned_cols=350  Identities=23%  Similarity=0.319  Sum_probs=287.1

Q ss_pred             eHHHHHHHHHHHHHHHHh-CCCCCCCEEEEEcCCcHhHHHHHHHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcC
Q 010536           79 TYQEVYDAAIRFGSAMRS-RGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQE  157 (508)
Q Consensus        79 Ty~~l~~~~~~~A~~L~~-~gv~~gd~Vai~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~  157 (508)
                      ||.||.+.++++|.+|.+ .|+++||+|+++++|+++++++++||+++|++++|+++..+.+++.++++.+++++++++.
T Consensus         1 t~~~l~~~~~~~a~~l~~~~g~~~gd~v~l~~~n~~~~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~ii~~~   80 (408)
T TIGR01733         1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGARLLLTDS   80 (408)
T ss_pred             CHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHhcCCCEEEEcC
Confidence            799999999999999998 8999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCceeeeHHHHHhcC-CCCCCCCCCCCCCeEEEEecCCCCCCcc
Q 010536          158 NKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPK  236 (508)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGTTG~pK  236 (508)
                      .....+.....       ..+.....                 +....... ...........+++++++|||||||.||
T Consensus        81 ~~~~~~~~~~~-------~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTtG~pK  136 (408)
T TIGR01733        81 ALASRLAGLVL-------PIILVDPL-----------------ELAALDDAPAPPPPDAPSGPDDLAYVIYTSGSTGRPK  136 (408)
T ss_pred             chhhhccccCC-------ceEEechh-----------------hhhhcccccccccccCCCCCCCcEEEEEcCCCCCCCC
Confidence            76554422211       11111100                 00000000 0001111135688999999999999999


Q ss_pred             eeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEecC----CHHhHHHHhhhhc
Q 010536          237 GVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG----DVRYLMEDIQELK  312 (508)
Q Consensus       237 ~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~l~~G~~~~~~~~----~~~~~~~~i~~~~  312 (508)
                      +|.++|+++......+...+     .+..++++++..|++|.+++...+.++..|+++++.+.    .+..+.+.+++++
T Consensus       137 ~v~~s~~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~  211 (408)
T TIGR01733       137 GVVVTHRSLVNLLAWLARRY-----GLDPDDRVLQFASLSFDASVEEIFGTLLAGATLVVPPEDEERDAALLAALIAEHP  211 (408)
T ss_pred             EEEeccHHHHHHHHHHHHhc-----CCCCCceEEEecCCccchhHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHcC
Confidence            99999999999999887766     77789999999999999998889999999999998764    2688999999999


Q ss_pred             CeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEec
Q 010536          313 PTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGA  392 (508)
Q Consensus       313 ~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG  392 (508)
                      +|.+.++|.+++.+.+...                                        .++        +++|.+++||
T Consensus       212 ~t~l~~~p~~~~~l~~~~~----------------------------------------~~~--------~~l~~v~~~g  243 (408)
T TIGR01733       212 VTVLNLTPSLLALLAAALP----------------------------------------PAL--------ASLRLVILGG  243 (408)
T ss_pred             ceEEEeCHHHHHHHHHhhh----------------------------------------hcc--------cCceEEEEeC
Confidence            9999999999999875321                                        011        3899999999


Q ss_pred             CCCCHHHHHHHHHhcC-CceeeecccccCCcceeeccCCCCc----ccCccccccCCeEEEEeecCCCCccCCCCCCCCe
Q 010536          393 APLPIHVEEFLRVTSG-APLTQGYGLTESCSGCFTSLADVFN----MIGTVGVPMTTVEARLESVPEMGYDALSSVPRGE  467 (508)
Q Consensus       393 ~~~~~~~~~~~~~~~~-~~v~~~YG~TE~~~~~~~~~~~~~~----~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GE  467 (508)
                      +++++++.+.+++.++ ..+++.||+||++.++.........    ...++|+|+++++++|++ +++..++  .|+.||
T Consensus       244 ~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~~~~--~g~~Ge  320 (408)
T TIGR01733       244 EALTPALVDRWRARGPGARLINLYGPTETTVWSTATLVDADDAPRESPVPIGRPLANTRLYVLD-DDLRPVP--VGVVGE  320 (408)
T ss_pred             ccCCHHHHHHHHHhCCCcEEEecccCCceEEEEEEEEcCccccCCccccccCcccCCceEEEEC-CCCCCCC--CCCceE
Confidence            9999999999999997 8999999999998877543322211    147899999999999999 7766554  458999


Q ss_pred             EEEecCcccccccCCcccccccccC-------C--ccccCcEEEEcCCCC
Q 010536          468 ICLRGNTLFSGYYKRPDLTEEVIVD-------G--WFHTGDIGEWQPMEL  508 (508)
Q Consensus       468 l~v~g~~v~~gY~~~~~~~~~~~~~-------g--w~~TGDlg~~d~dG~  508 (508)
                      |+++|+.++.||+++++.+.+.|..       |  ||+|||+|++|++|+
T Consensus       321 l~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl~~~d~~g~  370 (408)
T TIGR01733       321 LYIGGPGVARGYLNRPELTAERFVPDPFAGGDGARLYRTGDLVRYLPDGN  370 (408)
T ss_pred             EEecCccccccccCChhhhhcceeeCCCCCCCCceEEECCceEEEcCCCC
Confidence            9999999999999999998888732       2  999999999999985

This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.

>PRK07798 acyl-CoA synthetase; Validated

Probab=100.00  E-value=8.2e-45  Score=378.70  Aligned_cols=399  Identities=21%  Similarity=0.243  Sum_probs=306.5

Q ss_pred             CHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHHHHH
Q 010536           44 SPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACN  123 (508)
Q Consensus        44 ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~lA~~  123 (508)
                      ++.+++.+.++++|+++|+.+.   .      +.+||.||.++++++|++|.+.|+++||+|+++++|+++++++++||+
T Consensus         4 ~l~~~~~~~a~~~p~~~a~~~~---~------~~~ty~el~~~~~~la~~L~~~g~~~~~~v~v~~~n~~~~~~~~~a~~   74 (533)
T PRK07798          4 NIADLFEAVADAVPDRVALVCG---D------RRLTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAF   74 (533)
T ss_pred             cHHHHHHHHHHhCCCceEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHH
Confidence            7899999999999999999875   3      579999999999999999999999999999999999999999999999


Q ss_pred             HcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCceeeeHHH
Q 010536          124 SQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEE  203 (508)
Q Consensus       124 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (508)
                      ++|++++++++.++.+++.++++.+++++++++......+.+... .....+.++.++......      .......+++
T Consensus        75 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------~~~~~~~~~~  147 (533)
T PRK07798         75 KARAVPVNVNYRYVEDELRYLLDDSDAVALVYEREFAPRVAEVLP-RLPKLRTLVVVEDGSGND------LLPGAVDYED  147 (533)
T ss_pred             hcCeEEEecCcCCCHHHHHHHHhhcCCCEEEEchhhHHHHHHHhc-cCCCccEEEEecCCcccc------cCCccccHHH
Confidence            999999999999999999999999999999999876666555432 224455566555432210      0112345666


Q ss_pred             HHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhh----ccccC------CCCcEEEEec
Q 010536          204 FLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVV----TGKVC------SEEDTYFSFL  273 (508)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~----~~~~~------~~~~~~l~~~  273 (508)
                      +............ ..++.++++|||||||.||+|+++|+++...+......+..    ....+      ..+++++..+
T Consensus       148 ~~~~~~~~~~~~~-~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (533)
T PRK07798        148 ALAAGSPERDFGE-RSPDDLYLLYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPAP  226 (533)
T ss_pred             HHhccCCcCCCCC-CCCCceEEEECCCCCCCCcEEEEecHHHHHHHhhhhhhhcccchhhhhhhcccccCCCCceEEEec
Confidence            6654322111112 23345789999999999999999999988765543222100    00011      4678999999


Q ss_pred             ChHHHHHHHHHHHHHHcCcEEEEec--C-CHHhHHHHhhhhcCeEEEecchHHHH-HHHHHHHHhhcCChhHHHHHHHHH
Q 010536          274 PLAHIYDQIIETHCIHKGCSIGFWR--G-DVRYLMEDIQELKPTMFSGVPRVYDR-IYTGISNKISSGGALSKKLFEFAY  349 (508)
Q Consensus       274 pl~~~~g~~~~~~~l~~G~~~~~~~--~-~~~~~~~~i~~~~~t~~~~~P~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~  349 (508)
                      |++|..++...+.+++.|+++++.+  . ++..+++.++++++|.+.++|..+.. +.+.+. .                
T Consensus       227 pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~-~----------------  289 (533)
T PRK07798        227 PLMHGAGQWAAFAALFSGQTVVLLPDVRFDADEVWRTIEREKVNVITIVGDAMARPLLDALE-A----------------  289 (533)
T ss_pred             chhhhhhHHHHHHHHhcCceEEEecCCCcCHHHHHHHHHHhCCeEEEechHHHHHHHHHHhc-c----------------
Confidence            9999999998889999999999987  3 89999999999999999999987654 322111 0                


Q ss_pred             HHHhhhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhc-CCceeeecccccCCcceeecc
Q 010536          350 NYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESCSGCFTSL  428 (508)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~  428 (508)
                                         ....++        +++|.+++||+++++++.+++.+.+ +..+++.||+||++.+.....
T Consensus       290 -------------------~~~~~~--------~~l~~i~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~  342 (533)
T PRK07798        290 -------------------RGPYDL--------SSLFAIASGGALFSPSVKEALLELLPNVVLTDSIGSSETGFGGSGTV  342 (533)
T ss_pred             -------------------cccCCC--------CceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeecccccccccccCC
Confidence                               000011        3899999999999999999999988 789999999999866544332


Q ss_pred             CCCCcccCccc--cccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCccccccccc----CCccccCcEEE
Q 010536          429 ADVFNMIGTVG--VPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV----DGWFHTGDIGE  502 (508)
Q Consensus       429 ~~~~~~~~s~G--~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~~----~gw~~TGDlg~  502 (508)
                      ....   ...|  ++.++..++|++ +++..++.+....|+|+ +++.++.||+++++.+.+.|.    ++||+|||+|+
T Consensus       343 ~~~~---~~~g~~~~~~~~~~~i~~-~~~~~~~~g~~~~g~l~-~~~~~~~gy~~~~~~t~~~f~~~~~~~~~~TGD~~~  417 (533)
T PRK07798        343 AKGA---VHTGGPRFTIGPRTVVLD-EDGNPVEPGSGEIGWIA-RRGHIPLGYYKDPEKTAETFPTIDGVRYAIPGDRAR  417 (533)
T ss_pred             CCCC---ccCCCCccCCCceEEEEC-CCCCCCCCCCCCeeEEE-eecCccccccCChhhhHHhhccCCCCceEEcCcEEE
Confidence            2111   2334  788999999999 88876665532226665 566899999999999988883    25999999999


Q ss_pred             EcCCCC
Q 010536          503 WQPMEL  508 (508)
Q Consensus       503 ~d~dG~  508 (508)
                      +|+||+
T Consensus       418 ~~~~g~  423 (533)
T PRK07798        418 VEADGT  423 (533)
T ss_pred             EcCCCc
Confidence            999985

>PRK08276 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.4e-45  Score=381.21  Aligned_cols=371  Identities=20%  Similarity=0.245  Sum_probs=292.0

Q ss_pred             eEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHHHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEE
Q 010536           76 VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFV  155 (508)
Q Consensus        76 ~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~  155 (508)
                      +.+||.||.++++++|++|.+.|+++||+|+++++|+++++++++||+++|++++|+++.++.+++.++++.++++++++
T Consensus        10 ~~~ty~el~~~v~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~ii~   89 (502)
T PRK08276         10 EVVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLTAAEIAYIVDDSGAKVLIV   89 (502)
T ss_pred             cEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHhcCCCCEEEE
Confidence            67999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCceeeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCc
Q 010536          156 QENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEP  235 (508)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~p  235 (508)
                      ++.....+.+.........+.++......           .....+++......   .......++.++++|||||||.|
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~---~~~~~~~~~~a~i~~TSGtTG~P  155 (502)
T PRK08276         90 SAALADTAAELAAELPAGVPLLLVVAGPV-----------PGFRSYEEALAAQP---DTPIADETAGADMLYSSGTTGRP  155 (502)
T ss_pred             ccchhhHHHHHhhhccccccEEEEeCCCC-----------CccccHHHHHhcCC---CCCCCCCCcceEEEECCCCCCCC
Confidence            98766655433222111344444432111           11234454443221   11223556789999999999999


Q ss_pred             ceeecchHHHHHHHh--hhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEecC-CHHhHHHHhhhhc
Q 010536          236 KGVVLTNQAIVAEVL--SVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELK  312 (508)
Q Consensus       236 K~v~~sh~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~  312 (508)
                      |+|.++|.++.....  ........ ......++++++..|++|..++...+.++..|+++++.+. ++..+++.+++++
T Consensus       156 K~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~  234 (502)
T PRK08276        156 KGIKRPLPGLDPDEAPGMMLALLGF-GMYGGPDSVYLSPAPLYHTAPLRFGMSALALGGTVVVMEKFDAEEALALIERYR  234 (502)
T ss_pred             ceEEEccCCcchhhhhHHhhhhhhh-cccCCCCCEEEEcCcHHHHHHHHHHHHHHhccceEEEcCCCCHHHHHHHHHHhC
Confidence            999998877554332  11111111 1123467899999999999998887789999999988874 8999999999999


Q ss_pred             CeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEec
Q 010536          313 PTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGA  392 (508)
Q Consensus       313 ~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG  392 (508)
                      +|++.++|+++..+++...                                   ...+.++++        ++|.+++||
T Consensus       235 ~t~~~~~P~~~~~l~~~~~-----------------------------------~~~~~~~~~--------~lr~i~~~g  271 (502)
T PRK08276        235 VTHSQLVPTMFVRMLKLPE-----------------------------------EVRARYDVS--------SLRVAIHAA  271 (502)
T ss_pred             CeEEEehHHHHHHHHhCcc-----------------------------------ccCCCCCcc--------cceEEEecC
Confidence            9999999999998864210                                   001112232        899999999


Q ss_pred             CCCCHHHHHHHHHhcCCceeeecccccCCcceeeccCCCCcccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEec
Q 010536          393 APLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRG  472 (508)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g  472 (508)
                      ++++.++.+++.+.++..+++.||+||++.++...........+++|+|+ ++.++|+| +++..++.  |+.|||+++|
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d-~~~~~~~~--g~~Gel~v~~  347 (502)
T PRK08276        272 APCPVEVKRAMIDWWGPIIHEYYASSEGGGVTVITSEDWLAHPGSVGKAV-LGEVRILD-EDGNELPP--GEIGTVYFEM  347 (502)
T ss_pred             CCCCHHHHHHHHHHhCcHhhhhcccccccceeEecCccccccCCCcceec-ccEEEEEC-CCCCCCcC--CCceEEEEEC
Confidence            99999999999998899999999999999876665444334447899999 88999999 77765554  4899999999


Q ss_pred             CcccccccCCccccccccc-CCccccCcEEEEcCCCC
Q 010536          473 NTLFSGYYKRPDLTEEVIV-DGWFHTGDIGEWQPMEL  508 (508)
Q Consensus       473 ~~v~~gY~~~~~~~~~~~~-~gw~~TGDlg~~d~dG~  508 (508)
                      +.++.||+++++.+.+.+. ++||+|||+|++|++|+
T Consensus       348 ~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~  384 (502)
T PRK08276        348 DGYPFEYHNDPEKTAAARNPHGWVTVGDVGYLDEDGY  384 (502)
T ss_pred             CCccchhcCCHHHHHHHhcCCCceeecceEEEcCCcC
Confidence            9999999999999988884 49999999999999985

>PTZ00297 pantothenate kinase; Provisional

Probab=100.00  E-value=3.1e-44  Score=394.05  Aligned_cols=425  Identities=20%  Similarity=0.294  Sum_probs=332.7

Q ss_pred             CCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHH
Q 010536           40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM  119 (508)
Q Consensus        40 ~~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~  119 (508)
                      +...|+.++|.+.++++|+++|+.+.   . ..+.++.+||+|+.++++++|.+|.++|+++||+|+|+++|+++|+++.
T Consensus       424 ~~~~Tl~dll~~~a~~~pd~~al~~~---~-~~g~~~~lTY~El~~~V~~lAa~L~~lGV~~GDrVaIls~N~~Ewvia~  499 (1452)
T PTZ00297        424 AGVRSLGEMWERSVTRHSTFRCLGQT---S-ESGESEWLTYGTVDARARELGSGLLALGVRPGDVIGVDCEASRNIVILE  499 (1452)
T ss_pred             ccCCCHHHHHHHHHHHCCCCeEEEEe---c-cCCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence            45579999999999999999998642   1 1234578999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhh-hhhhhcCcee
Q 010536          120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQK-KEAEELGVSC  198 (508)
Q Consensus       120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  198 (508)
                      +||+++|+++||+++  +.+++.+++++++++++|++.+....+.+...   ..++.+++++....... ......+...
T Consensus       500 lA~~~~GaV~VPly~--t~~eL~yIL~~S~akvVfv~~~~l~kl~~i~~---~~Lr~IIv~d~~~~~~~~~~~~~~~i~~  574 (1452)
T PTZ00297        500 VACALYGFTTLPLVG--KGSTMRTLIDEHKIKVVFADRNSVAAILTCRS---RKLETVVYTHSFYDEDDHAVARDLNITL  574 (1452)
T ss_pred             HHHHHcCCEEEeCCC--CHHHHHHHHHhcCCcEEEEchhHHHHHHhhcc---cCCcEEEEECCCcccccccccccCCcce
Confidence            999999999999975  46799999999999999999877776655432   36788888864211000 0000112346


Q ss_pred             eeHHHHHhcCCC-CC-CCCCCCCCCeEEEEe---cCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEec
Q 010536          199 FSWEEFLQLGTL-DC-ELPPKKKTNISTIMY---TSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFL  273 (508)
Q Consensus       199 ~~~~~~~~~~~~-~~-~~~~~~~~~~~~i~~---TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  273 (508)
                      .+|+++...+.. .. ......+++++.|+|   ||||||.||||++||+|+++++........  ......+|++++++
T Consensus       575 ~s~~~ll~~G~~~~~~~~~~~~~dDlatIiYtSyTSGTTG~PKGVmLTH~Nlla~~~~~~~~~~--~~~~~~~D~~Ls~L  652 (1452)
T PTZ00297        575 IPYEFVEQKGRLCPVPLKEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTGV--LPSSFKKHLMVHFT  652 (1452)
T ss_pred             eeHHHHHhcCcccCccccCCCCcccEEEEEecCCCCCCCcCCcEEEEeHHHHHHHHHHHhhhcc--ccCCCCCCEEEEec
Confidence            679999876621 11 123346788999996   999999999999999999999988654210  01245789999999


Q ss_pred             ChHHHHHHHHHHHHHHcCcEEEEecCCHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHh
Q 010536          274 PLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKL  353 (508)
Q Consensus       274 pl~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (508)
                      |++|+++....+.+++.|+++..  +++..+++.+++++||+++++|.+|+++.+.+..+....+.+.+++++++...+.
T Consensus       653 PLaHI~er~~~~~~l~~G~~I~~--~d~~~lledL~~~rPTv~~~VPrv~ekI~~~i~~~~~~~~~~~~~lf~~A~~~k~  730 (1452)
T PTZ00297        653 PFAMLFNRVFVLGLFAHGSAVAT--VDAAHLQRAFVKFQPTILVAAPSLFSTSRLQLSRANERYSAVYSWLFERAFQLRS  730 (1452)
T ss_pred             hHHHHHHHHHHHHHHHcCCEEEe--CCHHHHHHHHHHHCCEEEEecHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence            99999997777888999999863  4789999999999999999999999999999988888888999999999999876


Q ss_pred             hhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecC--CCCHHHHHHHHHhcCCceeeecccccCCcceeeccCCC
Q 010536          354 GNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAA--PLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADV  431 (508)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~--~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~  431 (508)
                      .....+   ......++.+.++++++.+|.++|.+++||+  +++     .+... ++.+...||+||+.   +.+..+.
T Consensus       731 ~~~~~g---~~~~~l~d~LVf~kir~~lGGrlr~~isGga~~~l~-----~~l~~-~i~i~~g~glTE~~---~~~~~~~  798 (1452)
T PTZ00297        731 RLINIH---RRDSSLLRFIFFRATQELLGGCVEKIVLCVSEESTS-----FSLLE-HISVCYVPCLREVF---FLPSEGV  798 (1452)
T ss_pred             HHHhcC---CCCcHHHHHHHHHHHHHHhcCCeEEEEECCCccccC-----hHHhC-CceEEEecceEEee---eecCCCC
Confidence            655543   2345588899999999999999999999984  444     22222 67899999999942   3333333


Q ss_pred             CcccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccccCCccccCcEEEEc
Q 010536          432 FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQ  504 (508)
Q Consensus       432 ~~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDlg~~d  504 (508)
                      ..   ..|+|+|+++++|.+.++.+..    ...|||++++       .++|+.|.+. .+||+..|.+--+|
T Consensus       799 ~~---~~G~PlpgvEvKI~~~~E~~~~----~~~GEIlvr~-------~kdpe~T~e~-~~gW~~dG~L~Iid  856 (1452)
T PTZ00297        799 FC---VDGTPAPSLQVDLEPFDEPSDG----AGIGQLVLAK-------KGEPRRTLPI-AAQWKRDRTLRLLG  856 (1452)
T ss_pred             cc---cCCeecCceEEEEcccccccCC----CCCCeEEEEE-------CCChHHHHHh-hCcCccCCeEEEEe
Confidence            21   2399999999999984443322    1369999964       5889999874 48999988877655

>PRK07768 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=4.9e-45  Score=380.90  Aligned_cols=384  Identities=21%  Similarity=0.241  Sum_probs=297.5

Q ss_pred             CCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHHH
Q 010536           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (508)
Q Consensus        42 ~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~lA  121 (508)
                      +.++.+.+...|..+|+.+++.+.   ++.    +.+||.||.++++++|.+|.+.|+++||+|+++++|+++++++++|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~----~~~ty~el~~~v~~~a~~L~~~g~~~gd~V~l~~~~~~~~~~~~la   73 (545)
T PRK07768          1 MSRFTEKMYANARTSPRGMVTGEP---DAP----VRHTWGEVHERARRIAGGLAAAGVGPGDAVAVLAGAPVEIAPTAQG   73 (545)
T ss_pred             CchHHHHHHHHhhCCCcceEEecC---CCc----eEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHH
Confidence            356889999999999999999766   543    6799999999999999999999999999999999999999999999


Q ss_pred             HHHcCCEEEeccCCCCHHHH-------HHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhc
Q 010536          122 CNSQAITYVPLYDTLGANAV-------EFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEEL  194 (508)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l-------~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (508)
                      |+++|++++++++..+.+++       ..+++.++++++++++.....+.. ...  .                      
T Consensus        74 ~~~~g~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~--~----------------------  128 (545)
T PRK07768         74 LWMRGASLTMLHQPTPRTDLAVWAEDTLRVIGMIGAKAVVVGEPFLAAAPV-LEE--K----------------------  128 (545)
T ss_pred             HHHcCccccccCCCCCcchhHHHHHHHHHHHHhCCCCEEEecchhhhhhhh-hcc--c----------------------
Confidence            99999999999988776554       456777899999997754432211 100  0                      


Q ss_pred             CceeeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCC-cEEEEec
Q 010536          195 GVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEE-DTYFSFL  273 (508)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~  273 (508)
                      ......++++.....  ........+++++++|||||||.||+|.++|+++...+......+     .+..+ |++++.+
T Consensus       129 ~~~~~~~~~l~~~~~--~~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~~d~~~~~~  201 (545)
T PRK07768        129 GIRVLTVADLLAADP--IDPVETGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAA-----EFDVETDVMVSWL  201 (545)
T ss_pred             CCceeehhhhcccCC--CCcCCCCCCCEEEEEeCCCCCCCCceEEEcHHHHHHHHHHHHHhc-----CCCCCCceeEEeC
Confidence            011223444433221  122344678999999999999999999999999998887766655     55555 8999999


Q ss_pred             ChHHHHHHHH-HHHHHHcCcEEEEecC-----CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHH
Q 010536          274 PLAHIYDQII-ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEF  347 (508)
Q Consensus       274 pl~~~~g~~~-~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~  347 (508)
                      |++|..++.. .+.++..|+++++.+.     ++..+++.+++++++++...|..+..+.+.+......           
T Consensus       202 p~~~~~g~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----------  270 (545)
T PRK07768        202 PLFHDMGMVGFLTVPMYFGAELVKVTPMDFLRDPLLWAELISKYRGTMTAAPNFAYALLARRLRRQAKP-----------  270 (545)
T ss_pred             CCccchHHHHHHHHHHHCCceEEEeCHHHHHHhHHHHHHHHHHhCCEEEECchHHHHHHHHHHhccccc-----------
Confidence            9999999885 5578999999988753     6788999999999999887777776654432111000           


Q ss_pred             HHHHHhhhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHh---cCC---ceeeecccccCC
Q 010536          348 AYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVT---SGA---PLTQGYGLTESC  421 (508)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~---~~~---~v~~~YG~TE~~  421 (508)
                                            ...++        .++|.++++|+++++++.+++.+.   +|.   .+++.||+||++
T Consensus       271 ----------------------~~~~~--------~~lr~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~yG~tE~~  320 (545)
T PRK07768        271 ----------------------GAFDL--------SSLRFALNGAEPIDPADVEDLLDAGARFGLRPEAILPAYGMAEAT  320 (545)
T ss_pred             ----------------------cCCCc--------hheeeEEeccCCCCHHHHHHHHHHHHhcCCCcccccccccccccc
Confidence                                  01112        279999999999999999999874   455   499999999998


Q ss_pred             cceeeccCCC-------------------------CcccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCccc
Q 010536          422 SGCFTSLADV-------------------------FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLF  476 (508)
Q Consensus       422 ~~~~~~~~~~-------------------------~~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~  476 (508)
                      ..++....+.                         ....+++|+|+++++++|+| ++++.++.  ++.|||+++|+.++
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~-~~~~~~~~--g~~Gel~v~~~~~~  397 (545)
T PRK07768        321 LAVSFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRRLATLGPPLPGLEVRVVD-EDGQVLPP--RGVGVIELRGESVT  397 (545)
T ss_pred             eEEEccCCCCCcceeeechhHhhccCceeccCCCCcceEEeccCCCCCCEEEEEC-CCCCCCCC--CCEEEEEEccCccc
Confidence            7655433221                         11236899999999999999 88876654  48999999999999


Q ss_pred             ccccCCcccccccccCCccccCcEEEEcCCCC
Q 010536          477 SGYYKRPDLTEEVIVDGWFHTGDIGEWQPMEL  508 (508)
Q Consensus       477 ~gY~~~~~~~~~~~~~gw~~TGDlg~~d~dG~  508 (508)
                      .||++++......+.+|||+|||+|++|+||+
T Consensus       398 ~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~  429 (545)
T PRK07768        398 PGYLTMDGFIPAQDADGWLDTGDLGYLTEEGE  429 (545)
T ss_pred             ccccCCCCCcccccCCCeeeccceEEEecCCE
Confidence            99998766555445788999999999999884

>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=2.6e-45  Score=374.66  Aligned_cols=344  Identities=28%  Similarity=0.341  Sum_probs=281.7

Q ss_pred             CCHHHHH-HHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHHH
Q 010536           43 ESPWQFF-CDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (508)
Q Consensus        43 ~ti~~~l-~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~lA  121 (508)
                      +++.+++ ...++++|+++|+.+.   +      +.+||.||.++++++|.+|.+.|+++||+|+++++|+++++++++|
T Consensus         2 ~~~~~~~~~~~a~~~~~~~a~~~~---~------~~~ty~el~~~~~~~a~~L~~~g~~~~~~v~l~~~~~~~~~~~~la   72 (458)
T PRK09029          2 MIFSDWPWRHWAQVRPQAIALRLN---D------EVLTWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPETLLAYLA   72 (458)
T ss_pred             chhhcChHHHHHHhCCCceeeecC---C------cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHH
Confidence            4455554 5558899999999754   2      4699999999999999999999999999999999999999999999


Q ss_pred             HHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCceeeeH
Q 010536          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW  201 (508)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (508)
                      |+++|++++|+++..+.+++..+++.+++++++++++... +..        +....                      +
T Consensus        73 ~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~--------~~~~~----------------------~  121 (458)
T PRK09029         73 LLQCGARVLPLNPQLPQPLLEELLPSLTLDFALVLEGENT-FSA--------LTSLH----------------------L  121 (458)
T ss_pred             HHHcCCEEeecCCCCCHHHHHHHHHhcCCCEEEEcCcccc-hhh--------ccccc----------------------c
Confidence            9999999999999999999999999999999998875422 100        00000                      0


Q ss_pred             HHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHH
Q 010536          202 EEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ  281 (508)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~  281 (508)
                      .     ...........++++++++|||||||.||+|.+||++++..+......+     ....+++++..+|++|.+++
T Consensus       122 ~-----~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~h~~g~  191 (458)
T PRK09029        122 Q-----LVEGAHAVAWQPQRLATMTLTSGSTGLPKAAVHTAQAHLASAEGVLSLM-----PFTAQDSWLLSLPLFHVSGQ  191 (458)
T ss_pred             c-----cccccCcccCCCCCeEEEEECCCCCCCCCEEEEeHHHHHHHHHHHhhcC-----CCCccceEEEecCcHhhhhh
Confidence            0     0001112234578899999999999999999999999999988876665     67789999999999999998


Q ss_pred             HHHHHHHHcCcEEEEecCCHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhcCCC
Q 010536          282 IIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMP  361 (508)
Q Consensus       282 ~~~~~~l~~G~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (508)
                      ...+.++..|+++++.+.  ..+++.+  .++|.+..+|+++..++.....                             
T Consensus       192 ~~~~~~l~~G~~v~~~~~--~~~~~~i--~~~t~~~~~P~~~~~l~~~~~~-----------------------------  238 (458)
T PRK09029        192 GIVWRWLYAGATLVVRDK--QPLEQAL--AGCTHASLVPTQLWRLLDNRSE-----------------------------  238 (458)
T ss_pred             HHHHHHHhCCceEEeCCh--HHHHHHH--hhceeeecChHHHHHHHhcccc-----------------------------
Confidence            877788999999998764  4566666  4799999999999887642100                             


Q ss_pred             CCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCcceeeccCCCCcccCccccc
Q 010536          362 QNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVP  441 (508)
Q Consensus       362 ~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~s~G~p  441 (508)
                                          ..++|.+++||+++++++.+++.+. |.++++.||+||++........+  . ..++|+|
T Consensus       239 --------------------~~~l~~i~~gG~~~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~~~~~--~-~~~~G~~  294 (458)
T PRK09029        239 --------------------PLSLKAVLLGGAAIPVELTEQAEQQ-GIRCWCGYGLTEMASTVCAKRAD--G-LAGVGSP  294 (458)
T ss_pred             --------------------CCcceEEEECCCCCCHHHHHHHHHc-CCcEeccccccccCcceeccCCC--C-CCCCCCC
Confidence                                0278999999999999999999865 99999999999998765443322  1 2579999


Q ss_pred             cCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccccCCccccCcEEEEcCCCC
Q 010536          442 MTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQPMEL  508 (508)
Q Consensus       442 ~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDlg~~d~dG~  508 (508)
                      +++++++|++              |||+|+|+.++.||+++++.+.....+|||+|||+|++| ||+
T Consensus       295 ~~~~~~~i~~--------------gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~TGD~~~~~-~g~  346 (458)
T PRK09029        295 LPGREVKLVD--------------GEIWLRGASLALGYWRQGQLVPLVNDEGWFATRDRGEWQ-NGE  346 (458)
T ss_pred             CCCCEEEEeC--------------CEEEEecCceeeeeecCccccccccCCCccCCCCcEEEe-CCE
Confidence            9999999987              899999999999999999887665678999999999999 774

>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=6.5e-45  Score=376.91  Aligned_cols=375  Identities=20%  Similarity=0.219  Sum_probs=291.4

Q ss_pred             eEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHHHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEE
Q 010536           76 VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFV  155 (508)
Q Consensus        76 ~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~  155 (508)
                      +.+||.||.++++++|.+|.+.|+++||+|+++++|+++++++++||+++|+++++++|..+.+++.++++.++++++++
T Consensus        10 ~~~Ty~el~~~~~~la~~l~~~g~~~g~~V~v~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~i~~   89 (509)
T PRK12406         10 RRRSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEIAYILEDSGARVLIA   89 (509)
T ss_pred             eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCcccCHHHHHHHHhccCCcEEEE
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCChhhHhhcCccCCCCccEEEEecCCCchhh-----hhhhhcCceeeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCC
Q 010536          156 QENKIPSILSCLPRCCLYLKTIVSFANVSSSQK-----KEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSG  230 (508)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSG  230 (508)
                      +......+.+....    ...++..........     ............++++....   ........+++++++||||
T Consensus        90 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~a~i~~TSG  162 (509)
T PRK12406         90 HADLLHGLASALPA----GVTVLSVPTPPEIAAAYRISPALLTPPAGAIDWEGWLAQQ---EPYDGPPVPQPQSMIYTSG  162 (509)
T ss_pred             ccchhhhhhhhhhc----ccceeecccccccccccccccccccCCCCccCHHHHhccc---CccCCCCCCCceEEEECCC
Confidence            88766654333211    111111111000000     00000111234566554332   1122335689999999999


Q ss_pred             CCCCcceeecchHHHHHH---HhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEecC-CHHhHHH
Q 010536          231 TTGEPKGVVLTNQAIVAE---VLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG-DVRYLME  306 (508)
Q Consensus       231 TTG~pK~v~~sh~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~l~~G~~~~~~~~-~~~~~~~  306 (508)
                      |||.||+|.++|.+....   .......+     .+..++++++..|++|..+....+.++..|+++++.+. ++..+++
T Consensus       163 tTG~PK~v~~s~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  237 (509)
T PRK12406        163 TTGHPKGVRRAAPTPEQAAAAEQMRALIY-----GLKPGIRALLTGPLYHSAPNAYGLRAGRLGGVLVLQPRFDPEELLQ  237 (509)
T ss_pred             CCCCCceEEEechhHHHHHHHHHhhhhhc-----CCCCCceEEEEeCCcccchHHHHHHHHhhheEEEEccCCCHHHHHH
Confidence            999999999876654333   33333333     66788999999999999887777777889999888764 8999999


Q ss_pred             HhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEE
Q 010536          307 DIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQ  386 (508)
Q Consensus       307 ~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~  386 (508)
                      .++++++|++.++|++++.+++....                                   ..+..++        +++|
T Consensus       238 ~l~~~~~t~~~~~P~~~~~l~~~~~~-----------------------------------~~~~~~~--------~~l~  274 (509)
T PRK12406        238 LIERHRITHMHMVPTMFIRLLKLPEE-----------------------------------VRAKYDV--------SSLR  274 (509)
T ss_pred             HHHHcCCeEEEccHHHHHHHHhCchh-----------------------------------hcccCCC--------Ccee
Confidence            99999999999999999988642110                                   0011112        3899


Q ss_pred             EEEEecCCCCHHHHHHHHHhcCCceeeecccccCCcceeeccCCCCcccCccccccCCeEEEEeecCCCCccCCCCCCCC
Q 010536          387 AMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRG  466 (508)
Q Consensus       387 ~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~G  466 (508)
                      .++.||+++++++.+++.+.++..+++.||+||++.+++....+....++++|+|+++++++|+| +++..++.  |+.|
T Consensus       275 ~v~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~--g~~G  351 (509)
T PRK12406        275 HVIHAAAPCPADVKRAMIEWWGPVIYEYYGSTESGAVTFATSEDALSHPGTVGKAAPGAELRFVD-EDGRPLPQ--GEIG  351 (509)
T ss_pred             EEEEcCCCCCHHHHHHHHHHcCCcEEeeccccccCceEecCcccccccCCCcCccCCCcEEEEEC-CCCCCCCC--CCce
Confidence            99999999999999999999999999999999999876655444334458999999999999999 77765554  4899


Q ss_pred             eEEEecCcccc-cccCCcccccccccCCccccCcEEEEcCCCC
Q 010536          467 EICLRGNTLFS-GYYKRPDLTEEVIVDGWFHTGDIGEWQPMEL  508 (508)
Q Consensus       467 El~v~g~~v~~-gY~~~~~~~~~~~~~gw~~TGDlg~~d~dG~  508 (508)
                      ||+++|+.++. ||+++++.+.+.+.++||+|||+|++|+||+
T Consensus       352 el~v~~~~~~~~~y~~~~~~~~~~~~~~~~~TGD~~~~~~~g~  394 (509)
T PRK12406        352 EIYSRIAGNPDFTYHNKPEKRAEIDRGGFITSGDVGYLDADGY  394 (509)
T ss_pred             EEEEECCccccccccCCchhcccccCCCCeEEccEEEEcCCce
Confidence            99999998875 9999999888888899999999999999984

>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed

Probab=100.00  E-value=8e-45  Score=368.54  Aligned_cols=317  Identities=17%  Similarity=0.154  Sum_probs=255.5

Q ss_pred             eeHHHHHHHHHHHHHHHHhCCC-CCCCEEEEEcCCcHhHHHHHHHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEc
Q 010536           78 LTYQEVYDAAIRFGSAMRSRGV-NPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQ  156 (508)
Q Consensus        78 ~Ty~~l~~~~~~~A~~L~~~gv-~~gd~Vai~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~  156 (508)
                      +.|+||.++++++|.+|.+.|+ ++|++|+++++|+++++++++||+++|++++|++|.++.+++.++++.+++++++++
T Consensus        20 ~~~~el~~~~~~~a~~L~~~g~~~~~~~V~i~~~n~~e~~~~~~A~~~~G~~~vpl~~~~~~~~~~~~~~~~~~~~~i~~   99 (452)
T PRK07445         20 YNSQRFYQLAQQLYLQLQQLATPRTPPKILLAESDPLQFLAAFLAAVAAGCPVFLANPHWGQQEWQQVLNLVQPDQIWGL   99 (452)
T ss_pred             cChHHHHHHHHHHHHHHHHhcCCCCCCeEEEecCCCHHHHHHHHHHHHhCcEEEeeccCCCHHHHHHHHHhcCCCEEEec
Confidence            7999999999999999999988 579999999999999999999999999999999999999999999999999999987


Q ss_pred             CCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCceeeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcc
Q 010536          157 ENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPK  236 (508)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK  236 (508)
                      .......                ....                           ........+++.++++|||||||.||
T Consensus       100 ~~~~~~~----------------~~~~---------------------------~~~~~~~~~~~~~~i~~TSGTTG~PK  136 (452)
T PRK07445        100 DQLKLSH----------------PPPL---------------------------PSQGILPNLETGWIMIPTGGSSGQIR  136 (452)
T ss_pred             Ccccccc----------------CCCC---------------------------CccccCCCCCCcEEEEeCCCCCCCCc
Confidence            6432100                0000                           00001134578999999999999999


Q ss_pred             eeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEecC-CHHhHHHHhhhhcCeE
Q 010536          237 GVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTM  315 (508)
Q Consensus       237 ~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~  315 (508)
                      +|.+||+++...+......+     .+.. ++.++.+|++|.+|+...+.+++.|+++++.+. ..........++++++
T Consensus       137 gV~~t~~~l~~~~~~~~~~~-----~~~~-~~~~~~~Pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~~~~~~t~  210 (452)
T PRK07445        137 FAIHTWETLTASVQGFQRYF-----QLQQ-VNSFCVLPLYHVSGLMQFMRSFLTGGKLVILPYKRLKSGQELPPNPSDFF  210 (452)
T ss_pred             EEEechHHHHHHHHHHHHHh-----cCCC-CceEeccCchhhhhHHHHHHHHHcCCeEEEcChHhccchhhhhhhcCceE
Confidence            99999999988887766654     3433 467889999999999888889999999998874 2232233445788999


Q ss_pred             EEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCC
Q 010536          316 FSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPL  395 (508)
Q Consensus       316 ~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~  395 (508)
                      ++++|++++.+++..                                        ..++        +++|.+++||+++
T Consensus       211 ~~~vP~~l~~l~~~~----------------------------------------~~~l--------~~l~~i~~gG~~l  242 (452)
T PRK07445        211 LSLVPTQLQRLLQLR----------------------------------------PQWL--------AQFRTILLGGAPA  242 (452)
T ss_pred             EEehHHHHHHHHhhC----------------------------------------hhhh--------hcceEEEECCccC
Confidence            999999999875410                                        0011        2899999999999


Q ss_pred             CHHHHHHHHHhcCCceeeecccccCCcceeeccCCC-CcccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCc
Q 010536          396 PIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADV-FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNT  474 (508)
Q Consensus       396 ~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~-~~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~  474 (508)
                      ++++.+.++. ++.++++.||+||++..+.....+. ....+++|+|+|+++++|++           ++.|||+|+|+.
T Consensus       243 ~~~~~~~~~~-~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~p~~~v~i~~-----------g~~Gel~v~g~~  310 (452)
T PRK07445        243 WPSLLEQARQ-LQLRLAPTYGMTETASQIATLKPDDFLAGNNSSGQVLPHAQITIPA-----------NQTGNITIQAQS  310 (452)
T ss_pred             CHHHHHHHHh-cCCeEecCcchhhhcccccccCchhhccCCCcCCccCCCCeEEEcC-----------CCcceEEEeCCc
Confidence            9999998876 4899999999999986554433322 22347899999999999972           268999999999


Q ss_pred             ccccccCCcccccccccCCccccCcEEEEcCCCC
Q 010536          475 LFSGYYKRPDLTEEVIVDGWFHTGDIGEWQPMEL  508 (508)
Q Consensus       475 v~~gY~~~~~~~~~~~~~gw~~TGDlg~~d~dG~  508 (508)
                      ++.||++++..     .+|||+|||+|++|+||+
T Consensus       311 ~~~gY~~~~~~-----~~g~~~TGDl~~~d~dG~  339 (452)
T PRK07445        311 LALGYYPQILD-----SQGIFETDDLGYLDAQGY  339 (452)
T ss_pred             cchhhcCCccC-----CCCEEECCCEEEEcCCCC
Confidence            99999986432     378999999999999985

>TIGR01923 menE O-succinylbenzoate-CoA ligase

Probab=100.00  E-value=2e-44  Score=366.12  Aligned_cols=334  Identities=25%  Similarity=0.377  Sum_probs=275.0

Q ss_pred             eHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHHHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCC
Q 010536           79 TYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQEN  158 (508)
Q Consensus        79 Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~  158 (508)
                      ||+||.++++++|..|.+.|+++||+|+++++|+++++++++||+++|++++++++..+.+++..+++.++++++++++.
T Consensus         1 Ty~~l~~~~~~~a~~l~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   80 (436)
T TIGR01923         1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTDSL   80 (436)
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhcCcEEEecCcCCCHHHHHHHHHhcCCCEEEEcCc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999875


Q ss_pred             ChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCceeeeHHHHHhcC-CCCCCCCCCCCCCeEEEEecCCCCCCcce
Q 010536          159 KIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKG  237 (508)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGTTG~pK~  237 (508)
                      .....              +..                  ..+.++.... ...........+++++++|||||||.||+
T Consensus        81 ~~~~~--------------~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~  128 (436)
T TIGR01923        81 LEEKD--------------FQA------------------DSLDRIEAAGRYETSLSASFNMDQIATLMFTSGTTGKPKA  128 (436)
T ss_pred             ccccc--------------eee------------------cchHhhhhcccccccccccCCcCceEEEEeCCCCCCCCcE
Confidence            32110              000                  0111111111 01111223456889999999999999999


Q ss_pred             eecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEecCCHHhHHHHhhhhcCeEEE
Q 010536          238 VVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFS  317 (508)
Q Consensus       238 v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~i~~~~~t~~~  317 (508)
                      |.++|+++...+......+     ...++|++++.+|++|.+++...+.++..|+++++.+.. ..+++.++++++|++.
T Consensus       129 v~~s~~~~~~~~~~~~~~~-----~~~~~d~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~-~~~~~~l~~~~~t~~~  202 (436)
T TIGR01923       129 VPHTFRNHYASAVGSKENL-----GFTEDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDKF-NQLLEMIANERVTHIS  202 (436)
T ss_pred             EEEehHHHHHHHHHHHhhc-----CCCCCceEEEccCcHhHHHHHHHHHHHhcCceEEecchH-HHHHHHHHHhCCeEEE
Confidence            9999999999888877766     778899999999999999988888999999999988643 4999999999999999


Q ss_pred             ecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCH
Q 010536          318 GVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPI  397 (508)
Q Consensus       318 ~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~  397 (508)
                      ++|+++..+++...                                  .   .            .++|.+++||+++++
T Consensus       203 ~~P~~l~~l~~~~~----------------------------------~---~------------~~l~~~~~~G~~~~~  233 (436)
T TIGR01923       203 LVPTQLNRLLDEGG----------------------------------H---N------------ENLRKILLGGSAIPA  233 (436)
T ss_pred             eHHHHHHHHHhCcC----------------------------------C---C------------CceEEEEECCCCCCH
Confidence            99999998864210                                  0   0            279999999999999


Q ss_pred             HHHHHHHHhcCCceeeecccccCCcceeeccCCCCcccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccc
Q 010536          398 HVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFS  477 (508)
Q Consensus       398 ~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~  477 (508)
                      ++.++++. +|..+++.||+||++..++....+......++|+|+++++++|.. ++..       +.|||+++|+.++.
T Consensus       234 ~~~~~~~~-~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~-------~~Gel~v~~~~~~~  304 (436)
T TIGR01923       234 PLIEEAQQ-YGLPIYLSYGMTETCSQVTTATPEMLHARPDVGRPLAGREIKIKV-DNKE-------GHGEIMVKGANLMK  304 (436)
T ss_pred             HHHHHHHH-hCCceeeEecCCccchhccCcCccccccccCCCccCCCcEEEEEe-CCCC-------CceEEEEECCccch
Confidence            99999876 499999999999998766554443322223599999999999954 2221       57999999999999


Q ss_pred             cccCCcccccccccCCccccCcEEEEcCCCC
Q 010536          478 GYYKRPDLTEEVIVDGWFHTGDIGEWQPMEL  508 (508)
Q Consensus       478 gY~~~~~~~~~~~~~gw~~TGDlg~~d~dG~  508 (508)
                      ||+++++.+...+.+|||+|||+|++|+||+
T Consensus       305 gy~~~~~~~~~~~~~~~~~TGD~~~~~~dg~  335 (436)
T TIGR01923       305 GYLYQGELTPAFEQQGWFNTGDIGELDGEGF  335 (436)
T ss_pred             hhCCChhhhhhhhcCCCeeccceEEEcCCCC
Confidence            9999888887777889999999999999984

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.

>KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism]

Probab=100.00  E-value=5.4e-44  Score=340.69  Aligned_cols=396  Identities=16%  Similarity=0.172  Sum_probs=303.3

Q ss_pred             CCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHH
Q 010536           40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM  119 (508)
Q Consensus        40 ~~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~  119 (508)
                      -...+++++|.++++++|+++|+++.   +..    +++||+|+.+.++++|+.|+.+|++.||.||++|+|.+|++.++
T Consensus        74 r~~~ti~~~F~~~vrr~p~k~aii~~---~~~----~~~Tf~e~~~~s~~~A~~~~~~~l~~GD~VAL~men~pefv~lW  146 (649)
T KOG1179|consen   74 RERRTIAELFLSQVRRQPDKPAIIYE---GPF----QSLTFAELDARSNRVANYLHAEGLKAGDVVALLMENRPEFVALW  146 (649)
T ss_pred             ccCCcHHHHHHHHHHhCCCccEEEEe---CCC----ceeeHHHHHHHHHHHHHHHHHhhcccCCEEEEecCCChhHHHHH
Confidence            45689999999999999999999988   432    68999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCceee
Q 010536          120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCF  199 (508)
Q Consensus       120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (508)
                      ++++++|++.+.||+++..+.|.|.++.++++++|++.+..+.+.+..+......-.++..+.....         ....
T Consensus       147 lGLaKlGv~tA~iNtNlR~~~LlHsi~~s~aralv~~~el~~~~~e~~~~l~~~~i~~~~~~~~~~~---------~g~~  217 (649)
T KOG1179|consen  147 LGLAKLGVITAFINTNLRGEPLLHSITVSGARALVVGPELLNALEEILPLLIKNGIHVFSLGPTSVP---------DGIE  217 (649)
T ss_pred             HhHHhhCceeeeeccccccchhhhhhhhcCceEEEECHHHHHHHHhcchhhhhccceEEecCCCCCC---------chHH
Confidence            9999999999999999999999999999999999999998887766643322222233333222211         1122


Q ss_pred             eHHHHHhcC-CCC---CCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecCh
Q 010536          200 SWEEFLQLG-TLD---CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPL  275 (508)
Q Consensus       200 ~~~~~~~~~-~~~---~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl  275 (508)
                      ++...++.. ..+   ......+..++++.+|||||||.||+++++|.........+...+     +++++|+++.++|+
T Consensus       218 ~L~~~l~~~~~~~vp~~~~~~~~~~s~~lyIYTSGTTGLPKaAvith~r~~~~a~g~~~~~-----g~~~~DvvY~~lPL  292 (649)
T KOG1179|consen  218 SLLAKLSAAPKHPVPVSTRSGLTFRSPLLYIYTSGTTGLPKAAVITHLRYLQGAAGFYYVF-----GMTADDVVYTTLPL  292 (649)
T ss_pred             HHHHhhcccccCCCCcccCCCccccceeEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHh-----CCCccceEEEcchh
Confidence            333333333 112   223345678899999999999999999999999988888777776     89999999999999


Q ss_pred             HHHHHHHH-HHHHHHcCcEEEEec-CCHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHh
Q 010536          276 AHIYDQII-ETHCIHKGCSIGFWR-GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKL  353 (508)
Q Consensus       276 ~~~~g~~~-~~~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (508)
                      +|..|.+. +..|+..|+++++-. |+...+|+.+.+|++|++...-.+.+.|++..+...++                 
T Consensus       293 YHsaa~ilGi~~~l~~GaT~VlrkKFSAS~FW~DC~k~~~Tv~QYIGElcRYLl~~p~~~~er-----------------  355 (649)
T KOG1179|consen  293 YHSAAGILGIGGCLLHGATVVLRKKFSASNFWDDCRKYNVTVIQYIGELCRYLLNQPPSPEER-----------------  355 (649)
T ss_pred             HHHHHHHHHHHHHHhcCceEEEecccchhhhHHHHHHhCCeeeehHHHHHHHHHcCCCChhhc-----------------
Confidence            99999886 778999999999986 59999999999999999999999988887632211110                 


Q ss_pred             hhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCC-ceeeecccccCCcceeeccCCCC
Q 010536          354 GNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGA-PLTQGYGLTESCSGCFTSLADVF  432 (508)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~-~v~~~YG~TE~~~~~~~~~~~~~  432 (508)
                                                  .+++|..+.-|  +.+++.+.|.+.||. .+.+.||+||..... .+.... 
T Consensus       356 ----------------------------~HkVRla~GNG--LR~diW~~Fv~RFg~~~IgE~YgaTEgn~~~-~N~d~~-  403 (649)
T KOG1179|consen  356 ----------------------------QHKVRLAYGNG--LRPDIWQQFVKRFGIIKIGEFYGATEGNSNL-VNYDGR-  403 (649)
T ss_pred             ----------------------------CceEEEEecCC--CCchHHHHHHHHcCCCeEEEEeccccCccee-eeecCc-
Confidence                                        14778777655  889999999999987 599999999965443 333322 


Q ss_pred             cccCccccc------cCCeEEE---------EeecCCCCccCCCCCCCCeEEEec--Ccc---cccccCCcccccccc--
Q 010536          433 NMIGTVGVP------MTTVEAR---------LESVPEMGYDALSSVPRGEICLRG--NTL---FSGYYKRPDLTEEVI--  490 (508)
Q Consensus       433 ~~~~s~G~p------~~~~~~~---------i~d~~~~~~~~~~~~~~GEl~v~g--~~v---~~gY~~~~~~~~~~~--  490 (508)
                        .|.+|+.      +--.++.         |.| ++|--.++.+||.|.+.-+-  ..-   |.||.++.+.+.++.  
T Consensus       404 --vGA~G~~~~~~~~l~p~~LIk~D~~t~E~iRd-~~G~Ci~~~~GEpGlLv~~i~~k~P~~~F~GY~g~~~~t~kKl~r  480 (649)
T KOG1179|consen  404 --VGACGFMSRLLKLLYPFRLIKVDPETGEPIRD-SQGLCIPCPPGEPGLLVGKIVQKNPLRSFLGYAGPKKATEKKLLR  480 (649)
T ss_pred             --cccccchhhhhhhccceEEEEecCCCCceeec-CCceEEECCCCCCceEEEEeccCCchhhhccccCchhhhhhhhHH
Confidence              1333321      1112222         233 44544567788999765432  333   889999777665544  


Q ss_pred             ---c--CCccccCcEEEEcCCCC
Q 010536          491 ---V--DGWFHTGDIGEWQPMEL  508 (508)
Q Consensus       491 ---~--~gw~~TGDlg~~d~dG~  508 (508)
                         .  |-||.|||+-.+|+.||
T Consensus       481 DVFkkGD~~f~tGDlLv~D~~Gy  503 (649)
T KOG1179|consen  481 DVFKKGDVYFNTGDLLVADELGY  503 (649)
T ss_pred             hhhccCcEEEeeCcEEEEecCCc
Confidence               3  33999999999999996

>KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=1.2e-43  Score=353.49  Aligned_cols=404  Identities=19%  Similarity=0.238  Sum_probs=318.6

Q ss_pred             CCCCCHHHH-HHHHHHh-CCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHH
Q 010536           40 AGLESPWQF-FCDSAKR-IPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWII  117 (508)
Q Consensus        40 ~~~~ti~~~-l~~~a~~-~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~  117 (508)
                      ....|+... ++++.+. .++.+++++.   +...+....+||.|+.+++.++|..|.+.|+++||+|++++|+.+++++
T Consensus        60 g~~ln~~~n~~~~~~~~~~~~~~a~~~~---~~~~~~~~~~t~~el~~~v~~~a~~l~~~g~~kGD~V~~~mPm~~e~~i  136 (626)
T KOG1175|consen   60 GAFLNACYNCLDRHIKEKGGDKVAIIFE---GNEGGDTEVWTYKELLDQVVRLANVLRKCGLKKGDTVAIYMPMIPEAVI  136 (626)
T ss_pred             cchhhhhHhhhhhhhhhcCCCCcEEEEE---ecCCCceEEEEHHHHHHHHHHHHHHHHhcCCCCCcEEEEeccCChHHHH
Confidence            455555555 4444333 4899999887   4444443459999999999999999998899999999999999999999


Q ss_pred             HHHHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhc---------CccCC---CCccEEEEecCCCc
Q 010536          118 AMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSC---------LPRCC---LYLKTIVSFANVSS  185 (508)
Q Consensus       118 ~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~---------~~~~~---~~~~~~~~~~~~~~  185 (508)
                      +++||.++|++..++...++++++...++.++++++|+.+......+..         .....   ......+.+...  
T Consensus       137 a~lA~~r~Gai~~~v~~~fs~~~l~~Rl~~~~~k~i~t~d~~~~~~k~i~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--  214 (626)
T KOG1175|consen  137 AMLACARIGAIHSSVFAGFSAKELLDRLQDSKAKVIITQDVVARGGKSINLKCIVLEALLLVSDKSRPVWLDLIVSRR--  214 (626)
T ss_pred             HHHHHhhcCeEEEEeeccCCHHHHHHHHHhcCCCEEEEEeeeccCCCccchhhhHHHHhhcccccccccceeeEEecc--
Confidence            9999999999999999999999999999999999999987543322111         11000   000111111111  


Q ss_pred             hhhhhhhhcCceeeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHH-HHHhhhhhhhhhccccCC
Q 010536          186 SQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIV-AEVLSVDQMFVVTGKVCS  264 (508)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~-~~~~~~~~~~~~~~~~~~  264 (508)
                                .....|+++.........+...+.+++.+|+|||||||.||++.+++...+ ..+......+     .+.
T Consensus       215 ----------~~d~~~~~~~~~a~~~~~~~~~~~edpl~IlfTSGtTg~PK~v~ht~~g~ll~~~~~~~~~~-----d~q  279 (626)
T KOG1175|consen  215 ----------NRDLFWSLELKKASPEHPCVPVKAEDPLFILFTSGTTGKPKGVIHTTGGYLLGAALTSRYHF-----DLQ  279 (626)
T ss_pred             ----------cccccHHHHhhhcCCCCCceecCccCceEEEecCCCCCCCCceeeccCcchHHHhhhcceec-----cCC
Confidence                      012356666555555555778899999999999999999999999877644 4444444444     889


Q ss_pred             CCcEEEEecChHHHHHHHH-HHHHHHcCcEEEEecC---CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChh
Q 010536          265 EEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG---DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGAL  340 (508)
Q Consensus       265 ~~~~~l~~~pl~~~~g~~~-~~~~l~~G~~~~~~~~---~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~  340 (508)
                      ++|++++...+.|+.+.+. .+.+|+.|+++++...   ++..+++.+.++++|++++.|+.++.|.+..++..      
T Consensus       280 ~~dv~~~~~d~GWi~g~~~~~~gpl~~Ga~~vl~~g~p~~~~~~~~~v~k~~it~l~t~pt~~r~l~~~~~~~~------  353 (626)
T KOG1175|consen  280 PSDVLWCASDLGWITGHSYVLYGPLLNGATVVLYEGPPFDPGRIWKILDKYKVTVLYTAPTAYRLLRRLGQEDV------  353 (626)
T ss_pred             CcceEEEecccCeeeccchhhhhhhhcCcEEEEEcCCCCChhhhhhhHhhcceEEEEeccHHHHHHHHhccccc------
Confidence            9999999999999999886 6679999999999864   88999999999999999999999998754222111      


Q ss_pred             HHHHHHHHHHHHhhhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCC-ceeeeccccc
Q 010536          341 SKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGA-PLTQGYGLTE  419 (508)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~-~v~~~YG~TE  419 (508)
                                                   ...++        .+||++.++|++++++..+++.+.++. +|.+.||+||
T Consensus       354 -----------------------------~~~~~--------~sLk~~~S~Gepi~~~~~ew~~~~~~~~pv~e~~~qtE  396 (626)
T KOG1175|consen  354 -----------------------------TSYSL--------KSLRTCGSVGEPINPEAWEWWKRVTGLDPIYETYGQTE  396 (626)
T ss_pred             -----------------------------ccccc--------ceEEEEeecCccCCcchHHHHHHhcCccchhhceeeec
Confidence                                         11111        179999999999999999999999988 6999999999


Q ss_pred             CCcceeeccCCC-CcccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEec--C-cccccccCCcccccccc-c--C
Q 010536          420 SCSGCFTSLADV-FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRG--N-TLFSGYYKRPDLTEEVI-V--D  492 (508)
Q Consensus       420 ~~~~~~~~~~~~-~~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g--~-~v~~gY~~~~~~~~~~~-~--~  492 (508)
                      +|+.++...... ..++++.|.|.+|+.+.|.| ++|+..+... +.|||+++.  | +.+++|++|++.....+ .  .
T Consensus       397 tG~~~i~~~~g~~p~~pg~~~~p~~g~~v~i~d-e~g~~~~~~~-~~G~l~~~~~~P~~~~r~~~~n~erf~~~yf~k~p  474 (626)
T KOG1175|consen  397 TGGICITPKPGKLPIKPGSAGKPFPGYDVQILD-ENGNELPPST-GNGELRLKPPWPPGMFRTLWGNHERFRAAYFKKFP  474 (626)
T ss_pred             cCceeeeccCCCCCcCccccCCCCCCcceEEEC-CCCCCcCCCC-ceeEEEEeCCCCccccccccCCHHHhhhhhcccCC
Confidence            999998887777 66779999999999999999 7787766644 799999998  4 77899999998443333 3  7


Q ss_pred             CccccCcEEEEcCCCC
Q 010536          493 GWFHTGDIGEWQPMEL  508 (508)
Q Consensus       493 gw~~TGDlg~~d~dG~  508 (508)
                      |+|.|||.|++|+|||
T Consensus       475 g~y~tGD~~~rd~dGY  490 (626)
T KOG1175|consen  475 GYYFTGDGGRRDEDGY  490 (626)
T ss_pred             ceEEecCceEEcCCce
Confidence            8999999999999997

>PLN03051 acyl-activating enzyme; Provisional

Probab=100.00  E-value=4.8e-44  Score=368.57  Aligned_cols=343  Identities=17%  Similarity=0.122  Sum_probs=249.9

Q ss_pred             cCCcHhHHHHHHHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCCh------hhHhhcCccCCCCccEEEEecC
Q 010536          109 GSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI------PSILSCLPRCCLYLKTIVSFAN  182 (508)
Q Consensus       109 ~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~  182 (508)
                      ++|+++++++++||+++|++++|+++.++.+++.++++.++++++|+++...      ..+..... . ...+.++....
T Consensus         1 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~el~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~-~-~~~~~i~~~~~   78 (499)
T PLN03051          1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPLYSKVVE-A-APAKAIVLPAA   78 (499)
T ss_pred             CCCcHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEecCceeeCCeeecchhhhhh-c-ccceEEEEecc
Confidence            5899999999999999999999999999999999999999999999986431      11111111 0 11222222211


Q ss_pred             CCchhhhhhhhcCceeeeHHHHHhcCC-------CCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhh
Q 010536          183 VSSSQKKEAEELGVSCFSWEEFLQLGT-------LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQM  255 (508)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~  255 (508)
                      .....    .........++++.....       .........++++++|+|||||||.||||.+||++++.........
T Consensus        79 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~  154 (499)
T PLN03051         79 GEPVA----VPLREQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVESVTNILFSSGTTGEPKAIPWTHLSPLRCASDGWAH  154 (499)
T ss_pred             CcccC----CccccCcccHHHHHhhhccccccccccCCcccCCccceEEEEeCCCCCCCCceEEEccchHHHHHHHHHHh
Confidence            10000    000001234555542210       0111112356899999999999999999999999988766554433


Q ss_pred             hhhccccCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEec--CCHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHH
Q 010536          256 FVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWR--GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNK  333 (508)
Q Consensus       256 ~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~l~~G~~~~~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~  333 (508)
                      +     .+..+|++++.+|++|.+++..++.+++.|+++++.+  +++..+++.|+++++|++.++|+++..|++...  
T Consensus       155 ~-----~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~i~~~~vt~~~~vP~~~~~l~~~~~--  227 (499)
T PLN03051        155 M-----DIQPGDVVCWPTNLGWMMGPWLLYSAFLNGATLALYGGAPLGRGFGKFVQDAGVTVLGLVPSIVKAWRHTGA--  227 (499)
T ss_pred             c-----CCCCCCEEEEccCcceeeehHHHHHHHHcCCEEEecCCCCCcHHHHHHHHHhCCcEEEeCHHHHHHHHhcCc--
Confidence            3     6678899999999999999877788999999999886  378899999999999999999999998854110  


Q ss_pred             hhcCChhHHHHHHHHHHHHhhhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhc--CCce
Q 010536          334 ISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS--GAPL  411 (508)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~--~~~v  411 (508)
                                                       ......+++        +||.+++||+++++++.+++++.+  +..+
T Consensus       228 ---------------------------------~~~~~~~~~--------~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~  266 (499)
T PLN03051        228 ---------------------------------FAMEGLDWS--------KLRVFASTGEASAVDDVLWLSSVRGYYKPV  266 (499)
T ss_pred             ---------------------------------cccccCCch--------hheEEEecCCCCCHHHHHHHHHhcccccee
Confidence                                             001111222        799999999999999998887733  4789


Q ss_pred             eeecccccCCcceeeccCCCCcccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcc--cccccCCccccccc
Q 010536          412 TQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTL--FSGYYKRPDLTEEV  489 (508)
Q Consensus       412 ~~~YG~TE~~~~~~~~~~~~~~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v--~~gY~~~~~~~~~~  489 (508)
                      ++.||+||++..++..........+++|+|.++++++|+| ++++.++.|.++.|||+|+||.+  +.||++++. + +.
T Consensus       267 ~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~ivd-~~g~~~~~g~~~~Gel~v~g~~~~~~~gy~~~~~-~-~~  343 (499)
T PLN03051        267 IEYCGGTELASGYISSTLLQPQAPGAFSTASLGTRFVLLN-DNGVPYPDDQPCVGEVALAPPMLGASDRLLNADH-D-KV  343 (499)
T ss_pred             EeeeccccccceeecccccCCCCCccccCCCCCceEEEEC-CCCCCCCCCCCcceEEEEecCcCCCCccccCCcc-c-ce
Confidence            9999999987544432222223347999999999999999 88887776655689999999977  579997653 3 33


Q ss_pred             ccCC----------ccccCcEEEEcCCCC
Q 010536          490 IVDG----------WFHTGDIGEWQPMEL  508 (508)
Q Consensus       490 ~~~g----------w~~TGDlg~~d~dG~  508 (508)
                      +.+|          ||+|||+|++|+||+
T Consensus       344 ~~~g~~~~~~~~~~~~~TGDlg~~d~dG~  372 (499)
T PLN03051        344 YYKGMPMYGSKGMPLRRHGDIMKRTPGGY  372 (499)
T ss_pred             eeecCCccccCCcceeecCCeEEECCCCc
Confidence            4344          689999999999996

>PRK07868 acyl-CoA synthetase; Validated

Probab=100.00  E-value=8e-43  Score=383.13  Aligned_cols=387  Identities=14%  Similarity=0.122  Sum_probs=276.4

Q ss_pred             CCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHH
Q 010536           40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM  119 (508)
Q Consensus        40 ~~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~  119 (508)
                      ....++.++|+++++++|+++|+++.   +      +.+||+||.++++++|++|.+.|+++||+|+|+++|++++++++
T Consensus       444 ~~~~sl~~ll~~~a~~~pd~~Al~~~---~------~~lTY~eL~~ra~rlA~~L~~~Gv~~Gd~VaI~~~n~~e~v~a~  514 (994)
T PRK07868        444 HTRISLGRIIAEQARDAPKGEFLLFD---G------RVHTYEAVNRRINNVVRGLIAVGVRQGDRVGVLMETRPSALVAI  514 (994)
T ss_pred             CCCccHHHHHHHHHHHCCCCeEEEeC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence            34568999999999999999999865   3      47999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCceee
Q 010536          120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCF  199 (508)
Q Consensus       120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (508)
                      +||+++|++++|++|.   +++.++++.++++++|+++.....+...       ...+++++.........  .......
T Consensus       515 lA~~~aGav~vpl~p~---~~l~~il~~s~~~~li~~~~~~~~~~~~-------~~~iiv~~~~~~~~~~~--~~~~~~~  582 (994)
T PRK07868        515 AALSRLGAVAVLMPPD---TDLAAAVRLGGVTEIITDPTNLEAARQL-------PGRVLVLGGGESRDLDL--PDDADVI  582 (994)
T ss_pred             HHHHhcCCEEEEeCCc---hhHHHHHhccCCeEEEEChHHHHHHHhc-------CceEEEecCCccccccC--Ccchhhh
Confidence            9999999999999984   6899999999999999987766554321       12344443211000000  0000011


Q ss_pred             eHHHHHhcCCC-C--CCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChH
Q 010536          200 SWEEFLQLGTL-D--CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLA  276 (508)
Q Consensus       200 ~~~~~~~~~~~-~--~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~  276 (508)
                      .+++....... +  ....+..++++++|+|| ||||.||++.++|.+...........+     .+..+|++++.+|++
T Consensus       583 ~~~~~~~~~~~~~~~~~~~~~~~dd~a~IiyT-gStgtpKpk~vt~~~~~~~~~~~~~~~-----~l~~~d~~L~~~Pl~  656 (994)
T PRK07868        583 DMEKIDPDAVELPGWYRPNPGLARDLAFIAFS-TAGGELVAKQITNYRWALSAFGTASAA-----ALDRRDTVYCLTPLH  656 (994)
T ss_pred             hhhhcCcccccCCcccCCCCCCCCccEEEEEe-CCCCCcCcEEEehHHHHHHHHhhhhhc-----CCCCCCeEEEecChH
Confidence            11111111000 0  00112235889999999 578888888888877655544433333     677899999999999


Q ss_pred             HHHHHHHHH-HHHHcCcEEEEec-CCHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhh
Q 010536          277 HIYDQIIET-HCIHKGCSIGFWR-GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLG  354 (508)
Q Consensus       277 ~~~g~~~~~-~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (508)
                      |.+++...+ .++..|+++++.+ ++++.+++.|+++++|+++++|++++.|++...                       
T Consensus       657 h~~gl~~~l~~~l~gG~~vvl~~~~~~~~~~~~I~~~~vT~~~~~Ps~l~~L~~~~~-----------------------  713 (994)
T PRK07868        657 HESGLLVSLGGAVVGGSRIALSRGLDPDRFVQEVRQYGVTVVSYTWAMLREVVDDPA-----------------------  713 (994)
T ss_pred             HHhHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcC-----------------------
Confidence            999998655 4555565566655 499999999999999999999999998864100                       


Q ss_pred             hhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcC-CceeeecccccCCcceeeccCCCCc
Q 010536          355 NMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG-APLTQGYGLTESCSGCFTSLADVFN  433 (508)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~-~~v~~~YG~TE~~~~~~~~~~~~~~  433 (508)
                                    ....++        +++|.++.  +.+++++.+++.+.++ ..+++.||+||++.... ...  ..
T Consensus       714 --------------~~~~~~--------~slr~~~g--~gl~~~l~~~~~~~~~~~~l~~~YG~TE~~~~~~-~~~--~~  766 (994)
T PRK07868        714 --------------FVLHGN--------HPVRLFIG--SGMPTGLWERVVEAFAPAHVVEFFATTDGQAVLA-NVS--GA  766 (994)
T ss_pred             --------------CccCCC--------CceEEEec--CCCCHHHHHHHHHHhCchheeeeeeccccccccc-ccC--CC
Confidence                          000011        27888763  3499999999999886 79999999999875433 221  23


Q ss_pred             ccCccccccCCe-EEEEeec----------CCCCccCCCCCCCCeEEEecCcccccccCCcccc--cccc--cCCccccC
Q 010536          434 MIGTVGVPMTTV-EARLESV----------PEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLT--EEVI--VDGWFHTG  498 (508)
Q Consensus       434 ~~~s~G~p~~~~-~~~i~d~----------~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~--~~~~--~~gw~~TG  498 (508)
                      +.+++|+|+||+ +++|.+.          ++|....+..|+.|||+++|+..    + +++.+  ...|  .+|||+||
T Consensus       767 ~~~svG~p~pg~~~v~i~~~d~~~g~li~d~~G~~~~~~~ge~Gel~~~~~~~----~-~p~~t~~~~~~~~~dgw~~TG  841 (994)
T PRK07868        767 KIGSKGRPLPGAGRVELAAYDPEHDLILEDDRGFVRRAEVNEVGVLLARARGP----I-DPTASVKRGVFAPADTWISTE  841 (994)
T ss_pred             CCcccCCccCCCCceeEEEecCcCCceeecCCceEEEcCCCCceEEEEecCCC----C-ChhhhhHhcccccCCEEEecc
Confidence            448999999997 6766420          33311223456999999999863    2 34332  2234  37899999


Q ss_pred             cEEEEcCCCC
Q 010536          499 DIGEWQPMEL  508 (508)
Q Consensus       499 Dlg~~d~dG~  508 (508)
                      |+|++|+||+
T Consensus       842 Dlg~~d~dG~  851 (994)
T PRK07868        842 YLFRRDDDGD  851 (994)
T ss_pred             ceEEEcCCCC
Confidence            9999999996

>PRK08308 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.9e-40  Score=334.13  Aligned_cols=298  Identities=17%  Similarity=0.185  Sum_probs=250.9

Q ss_pred             eEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHHHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEE
Q 010536           76 VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFV  155 (508)
Q Consensus        76 ~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~  155 (508)
                      +.+||.||.++++++|..|. .|+++|++|+++++|+++++++++|++++|++++||++..+.+++..++++++++.+++
T Consensus         7 ~~~ty~el~~~~~~~a~~l~-~~~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~i~   85 (414)
T PRK08308          7 EEYSKSDFDLRLQRYEEMEQ-FQEAAGNRFAVCLKDPFDIITLVFFLKEKGASVLPIHPDTPKEAAIRMAKRAGCHGLLY   85 (414)
T ss_pred             ceecHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHHCCeEEEecCCCCCHHHHHHHHHhCCCCEEEe
Confidence            57999999999999999985 68999999999999999999999999999999999999999999999999999999998


Q ss_pred             cCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCceeeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCc
Q 010536          156 QENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEP  235 (508)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~p  235 (508)
                      ++....                  ..                               ......++++++++|||||||.|
T Consensus        86 ~~~~~~------------------~~-------------------------------~~~~~~~~~~~~i~~TSGtTG~P  116 (414)
T PRK08308         86 GESDFT------------------KL-------------------------------EAVNYLAEEPSLLQYSSGTTGEP  116 (414)
T ss_pred             cCcccc------------------cc-------------------------------cCCCCCCCCceEEEECCCCCCCC
Confidence            752100                  00                               00113457889999999999999


Q ss_pred             ceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHH-HHHHHHcCcEEEEecC-CHHhHHHHhhhhcC
Q 010536          236 KGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-DVRYLMEDIQELKP  313 (508)
Q Consensus       236 K~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~  313 (508)
                      |+|.++|+++..++..+...+     ....+++++..+|++|.+++.. .+.++..|+++++.+. ++..+++.++++++
T Consensus       117 Kgv~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~  191 (414)
T PRK08308        117 KLIRRSWTEIDREIEAYNEAL-----NCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIITNKNPKFALNILRNTPQ  191 (414)
T ss_pred             cEEEEehHhHHHHHHHHHHhh-----CCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecCCCCHHHHHHHHHHhCC
Confidence            999999999999888777665     6678899999999999999864 7789999999988874 99999999999999


Q ss_pred             eEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecC
Q 010536          314 TMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAA  393 (508)
Q Consensus       314 t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~  393 (508)
                      |+++++|.++..+.+...                                  .   +            .+++.++++|+
T Consensus       192 t~~~~~P~~~~~l~~~~~----------------------------------~---~------------~~l~~~~~~G~  222 (414)
T PRK08308        192 HILYAVPLMLHILGRLLP----------------------------------G---T------------FQFHAVMTSGT  222 (414)
T ss_pred             eEEEcCHHHHHHHHhcCC----------------------------------c---c------------ccccEEEEccC
Confidence            999999999998754210                                  0   0            15788999999


Q ss_pred             CCCHHHHHHHHHhcCCceeeecccccCCcceeeccCCCCcccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecC
Q 010536          394 PLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGN  473 (508)
Q Consensus       394 ~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~  473 (508)
                      ++++++.+.+++. +..+++.||+||++.+....  + ....+++|+|+|++++++.+ ++        ++.|||++++.
T Consensus       223 ~l~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~--~-~~~~~~~G~p~~~~~~~~~~-~~--------~~~gel~v~~~  289 (414)
T PRK08308        223 PLPEAWFYKLRER-TTYMMQQYGCSEAGCVSICP--D-MKSHLDLGNPLPHVSVSAGS-DE--------NAPEEIVVKMG  289 (414)
T ss_pred             CCCHHHHHHHHHh-CChhhhccCccccCCeeecC--C-CCCCCccCccCCCeEEEEec-CC--------CCCceEEEEcC
Confidence            9999999999886 67899999999998644321  1 22347899999999999876 32        35799999852


Q ss_pred             cccccccCCcccccccccCCccccCcEEEEcCCCC
Q 010536          474 TLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQPMEL  508 (508)
Q Consensus       474 ~v~~gY~~~~~~~~~~~~~gw~~TGDlg~~d~dG~  508 (508)
                                        ++||+|||+|++|+||+
T Consensus       290 ------------------~~~~~TGDl~~~~~dg~  306 (414)
T PRK08308        290 ------------------DKEIFTKDLGYKSERGT  306 (414)
T ss_pred             ------------------CceEECCceEEECCCcc
Confidence                              57999999999999984

>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=1.4e-34  Score=307.92  Aligned_cols=380  Identities=22%  Similarity=0.253  Sum_probs=304.5

Q ss_pred             CCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHH
Q 010536           40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM  119 (508)
Q Consensus        40 ~~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~  119 (508)
                      +...++.+.|...+...|++.|+.+.   +      .++||+++..+++++|+.|.+.|+++++.|+++.+.++++++.+
T Consensus       224 ~~~~~i~~~f~~~a~~~p~~~a~~~~---~------~~lty~el~~~a~~la~~l~~~g~~~~~~V~i~~~rs~~~i~~~  294 (642)
T COG1020         224 PLRLTIHLLFEEQAATTPDAVALVRG---G------QQLTYAELDARANRLARLLISLGVGPGETVAILADRSLELVVAL  294 (642)
T ss_pred             CccchHHHHHHHHHHhCCCceeEecC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCHHHHHHH
Confidence            34478999999999999999888764   2      47999999999999999999999999999999998899999999


Q ss_pred             HHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCceee
Q 010536          120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCF  199 (508)
Q Consensus       120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (508)
                      +|++++|+.++|++|..+.+++..+++.++++.+++..........        ... +..+...               
T Consensus       295 l~ilkaG~~yvP~d~~~P~~r~~~~l~~~~~~~~~~~~~~~~~~~~--------~~~-~~~~~~~---------------  350 (642)
T COG1020         295 LAVLKAGAAYVPLDPLYPAERLAYILEDSRPTLLLTQAHLRVDDVG--------LPG-LALDDAL---------------  350 (642)
T ss_pred             HHHHhcCCeEecCCCCChHHHHHHHHhhcCccEEEecccccccccc--------CCc-ccccccc---------------
Confidence            9999999999999999999999999999999999998332211000        000 0110000               


Q ss_pred             eHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHH
Q 010536          200 SWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIY  279 (508)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~  279 (508)
                       +.    .............++.+|++|||||||.||||..+|+++..........+     .....|+++...++.+..
T Consensus       351 -~~----~~~~~~~~~~~~~~~~ayiiytsgstg~Pkgv~~~h~~~~~~~~~~~~~~-----~~~~~d~~l~~~s~~fD~  420 (642)
T COG1020         351 -SE----IPDTDPIPQALLGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARF-----GLDADDRVLALASLSFDA  420 (642)
T ss_pred             -cc----CCccCcccccCCCCCeEEEEEccCCCCCCCCceecCHHHHHHHHHHHHhc-----CCCcccEEeecCCcccch
Confidence             00    00000111233558899999999999999999999999999777776666     778888999999998888


Q ss_pred             HHHHHHHHHHcCcEEEEecC----CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhh
Q 010536          280 DQIIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGN  355 (508)
Q Consensus       280 g~~~~~~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (508)
                      ....++.++..|+.+++...    ++..+.+.+.++++|++..+|..+..++...........                 
T Consensus       421 ~~~~~f~~l~~G~~l~~~~~~~~~~~~~l~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~~~~-----------------  483 (642)
T COG1020         421 SVFEIFGALLEGARLVLAPALLQVDPAALLELLEAQGITVLLLVPLLLRLLLLAALAPDLISP-----------------  483 (642)
T ss_pred             hHHHHHHHHhCCCEEEecCccccCCHHHHHHHHHHcCCEEEEecHHHHHHHHhchhhccccCC-----------------
Confidence            88889999999999998864    899999999999999999999999988652000000000                 


Q ss_pred             hhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhc--CCceeeecccccCCcceeeccCCCCc
Q 010536          356 MKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS--GAPLTQGYGLTESCSGCFTSLADVFN  433 (508)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~--~~~v~~~YG~TE~~~~~~~~~~~~~~  433 (508)
                                                ...+|.+++||+.++.++...+....  ...+.+.||+||+.............
T Consensus       484 --------------------------~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~l~~~ygpTe~~~~~~~~~~~~~~  537 (642)
T COG1020         484 --------------------------CERLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEATLDAPSFPISAEL  537 (642)
T ss_pred             --------------------------cccccEEEEcCCCCCHHHHHHHHHhccccceEeeccCccHHhhheeeEEccccc
Confidence                                      01489999999999999999888765  46899999999976655543322211


Q ss_pred             c-cCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccccC-CccccCcEEEEcCCCC
Q 010536          434 M-IGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVD-GWFHTGDIGEWQPMEL  508 (508)
Q Consensus       434 ~-~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~~~-gw~~TGDlg~~d~dG~  508 (508)
                      . ...+|+|+++..+.|.| .....+|.+  ..||+++.|.++..||+++++.+.+.|.. ++|+|||+++++.||.
T Consensus       538 ~~~~piG~p~~n~~~~ild-~~~~~~p~g--v~gel~i~g~~~a~gy~~~p~lt~~~f~~~~~y~tgD~~r~~~dg~  611 (642)
T COG1020         538 ESRVPIGRPVANTQLYILD-QGLRPLPLG--VPGELYIAGLGLALGYLNRPDLTAERFIALRLYRTGDLARPLADGA  611 (642)
T ss_pred             CCCCCcceeeCCCeEEEEC-CCCCcCCCC--CCeeeEECCcchhhhhcCChhhhHHHhhhccCccCCCeeeECCCCe
Confidence            1 35799999999999999 778878777  78999999999999999999999999955 4999999999999984

>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=99.96  E-value=4.9e-28  Score=239.07  Aligned_cols=210  Identities=28%  Similarity=0.424  Sum_probs=169.0

Q ss_pred             CCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEE
Q 010536          217 KKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGF  296 (508)
Q Consensus       217 ~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~l~~G~~~~~  296 (508)
                      ..++++++++|||||||.||+|.++|.++...+......+       ...++++..+|++|.+++...+.++..|+++++
T Consensus        32 ~~~~d~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~-------~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~v~  104 (358)
T PRK07824         32 PIDDDVALVVATSGTTGTPKGAMLTAAALTASADATHDRL-------GGPGQWLLALPAHHIAGLQVLVRSVIAGSEPVE  104 (358)
T ss_pred             CCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHhcc-------CCCCeEEEECChHHHHHHHHHHHHHHcCCeEEe
Confidence            4568999999999999999999999999988877654432       345788999999999999888889999999887


Q ss_pred             ec----CCHHhHHHHhhhhc--CeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhcCCCCCcchhhhH
Q 010536          297 WR----GDVRYLMEDIQELK--PTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLD  370 (508)
Q Consensus       297 ~~----~~~~~~~~~i~~~~--~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (508)
                      ..    +++..+++.+++++  .++...+|..+..++....                                      .
T Consensus       105 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~l~~~~~~~~--------------------------------------~  146 (358)
T PRK07824        105 LDVSAGFDPTALPRAVAELGGGRRYTSLVPMQLAKALDDPA--------------------------------------A  146 (358)
T ss_pred             cCcCCCcCHHHHHHHHHHhCCCceEEEecHHHHHHHHhCcc--------------------------------------c
Confidence            32    38999999999998  5666677877665532100                                      0


Q ss_pred             HHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCcceeeccCCCCcccCccccccCCeEEEEe
Q 010536          371 SLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLE  450 (508)
Q Consensus       371 ~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~s~G~p~~~~~~~i~  450 (508)
                      ..++        .++|.+++||+++++++.+++.+. ++.+++.||+||++..+           ...|+|+++++++|.
T Consensus       147 ~~~~--------~~l~~i~~gG~~l~~~~~~~~~~~-~~~v~~~YG~TE~~~~~-----------~~~G~~~~g~~v~i~  206 (358)
T PRK07824        147 TAAL--------AELDAVLVGGGPAPAPVLDAAAAA-GINVVRTYGMSETSGGC-----------VYDGVPLDGVRVRVE  206 (358)
T ss_pred             cCCc--------ccceEEEECCCCCCHHHHHHHHhc-CCcEEecccCCccCCCc-----------CcCceeCCCCEEEec
Confidence            0011        279999999999999999998864 99999999999987543           235899999999984


Q ss_pred             ecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccc-cCCccccCcEEEEcCCCC
Q 010536          451 SVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGDIGEWQPMEL  508 (508)
Q Consensus       451 d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~-~~gw~~TGDlg~~d~dG~  508 (508)
                      +              |||+++|+.++.||+++++..  .| .+|||+|||+|++ ++|+
T Consensus       207 ~--------------Gei~v~g~~~~~gY~~~~~~~--~~~~~g~~~TGDl~~~-~~g~  248 (358)
T PRK07824        207 D--------------GRIALGGPTLAKGYRNPVDPD--PFAEPGWFRTDDLGAL-DDGV  248 (358)
T ss_pred             C--------------CEEEEecCccccccCCCcccc--cccCCCceecccEEEE-eCCE
Confidence            4              999999999999999988743  34 6789999999999 6663

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=99.95  E-value=1.2e-25  Score=228.46  Aligned_cols=403  Identities=12%  Similarity=0.088  Sum_probs=279.0

Q ss_pred             CCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhC-CCCCCCEEEEEcCCcHhHHHHHHH
Q 010536           43 ESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSR-GVNPGDRCGIYGSNCPEWIIAMEA  121 (508)
Q Consensus        43 ~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~-gv~~gd~Vai~~~n~~~~~~~~lA  121 (508)
                      .++.++|+++++.+|+.+|+...   ++.+...+++||++|..++.+++.+|... -++.||.|++++++++|++++++|
T Consensus       770 ~~ile~Lq~R~a~tp~~~a~~~~---n~~~~~~~~~Tw~~f~krva~i~~~l~~k~~lk~Gd~V~Lmy~~sie~vaa~~~  846 (1363)
T KOG3628|consen  770 LTILEILQWRAAKTPDHIAFTTL---NARGATKKTLTWAQFHKRVARIAEYLQDKGHLKAGDHVVLMYPPSIEFVAAIYA  846 (1363)
T ss_pred             HHHHHHHHHHhhcCCCceEEEEe---ccCCcccceeEHHHHHHHHHHHHHHHHhcccCCCCCeEEEEcCChHHHHHHHHH
Confidence            67999999999999999999998   88888889999999999999999999977 489999999999999999999999


Q ss_pred             HHHcCCEEEeccCCC------CHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCC---CCccEEEEecCCCchhhhhhh
Q 010536          122 CNSQAITYVPLYDTL------GANAVEFIINHAEVSIAFVQENKIPSILSCLPRCC---LYLKTIVSFANVSSSQKKEAE  192 (508)
Q Consensus       122 ~~~~G~~~v~l~~~~------~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  192 (508)
                      |+.+|.+++|+.|..      ....+..+++.+++.++++++.....+.+.-....   .-+..++.+.+.....     
T Consensus       847 Cly~GliPIpv~p~~~s~l~~~l~~~~~ii~~~kv~ailv~~~v~~lLrsr~~s~~~~~s~~p~i~~~~~~~~t~-----  921 (1363)
T KOG3628|consen  847 CLYLGLIPIPVPPPHASNLIEDLPTFRMIIKVYKVAAILVDQKVLKLLRSREASAHVDQSAIPLILVLPKLPETI-----  921 (1363)
T ss_pred             HHhcCeeeeccCCccHHhhhhhhHHHHHHHHHhhhheEEecHHHHHHHhhhhHHHHhhhhcchhhhcccccchhh-----
Confidence            999999999998854      34467788899999999999875544332111000   1111111221111000     


Q ss_pred             hcCceeeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEe
Q 010536          193 ELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSF  272 (508)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  272 (508)
                           ......+. .......+.-.+.+.+|++-+.--++|.-.++.+||..+++.++..+..+     .+.+..-++.+
T Consensus       922 -----~k~~~~~~-k~~~~~~~g~~~k~~~a~v~~~~~~dg~l~~~~msHsslla~Ck~iKe~~-----~l~~~rpl~~~  990 (1363)
T KOG3628|consen  922 -----RKRKKNIK-KLNTPTPPGLNNKETPALVWFNVSTDGMLIGVKMSHSSLLAFCKIIKETC-----QLYKSRPLLGC  990 (1363)
T ss_pred             -----hhhhhhhh-ccCCCCCccccCCCceEEEEEEecCCcceeeeeccHHHHHHHHHHHHHHH-----ccccCCceEEE
Confidence                 00001111 11111222234668899999999999999999999999999999999998     66677777777


Q ss_pred             cChHHHHHHH-HHHHHHHcCcEEEEecC-----CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHH
Q 010536          273 LPLAHIYDQI-IETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFE  346 (508)
Q Consensus       273 ~pl~~~~g~~-~~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~  346 (508)
                      .+.+.+.|+. +.+..++.|.+.++.+.     ++..++..+.++++.-++.+-..+..+.+.+....+..+        
T Consensus       991 ~~~~sGlgf~~wcLlgVysGh~T~Li~p~~l~nnpsLll~~i~~~kvkDt~~~~~tln~c~~~l~t~~enl~-------- 1062 (1363)
T KOG3628|consen  991 SSPYSGLGFNHWCLLGVYSGHPTLLISPMDLENNPSLLLQIISQYKVKDTYPTYSTLNLCQKGLETSVENLS-------- 1062 (1363)
T ss_pred             ecCccchhHHHHHHHHHHcCCceeecCHHHhhcCHHHHHHHHhcccccccchhHHHHHHHHhccccccchhh--------
Confidence            7777777776 68889999999777653     899999999999999999988888877664433322111        


Q ss_pred             HHHHHHhhhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhc---CC---ceeeecccccC
Q 010536          347 FAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS---GA---PLTQGYGLTES  420 (508)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~---~~---~v~~~YG~TE~  420 (508)
                                                   ......  +-..++..-+.....+.+.|.+.+   |.   .+--.|+.-=-
T Consensus      1063 -----------------------------~~gnn~--s~s~vv~~~~RPr~ali~sf~klfa~igLsp~avStsys~r~N 1111 (1363)
T KOG3628|consen 1063 -----------------------------KRGNNT--SSSIVVPAEERPRIALIASFKKLFAAIGLSPRAVSTSYSSRVN 1111 (1363)
T ss_pred             -----------------------------hhhccc--ccceeeecCCccHHHHHHHHHHHHHHcCCChhhhcccccccCC
Confidence                                         000000  113445555566666666666554   22   23333443322


Q ss_pred             CcceeeccCCC-------C-------------------cccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCc
Q 010536          421 CSGCFTSLADV-------F-------------------NMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNT  474 (508)
Q Consensus       421 ~~~~~~~~~~~-------~-------------------~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~  474 (508)
                      -.++.....+.       +                   -.....|...+++++.|++ |+.. .|++.|+.||||+.|.+
T Consensus      1112 p~Ic~r~~sg~~Pt~~y~D~raLR~grV~~ve~~ap~~l~L~dSG~~~~~~~i~Ivn-PEtk-~pc~dge~GEIW~~S~h 1189 (1363)
T KOG3628|consen 1112 PFICLRSYSGPEPTTVYLDARALREGRVRLVEVGAPHSLLLYDSGKLPVYTDIAIVN-PETK-GPCRDGELGEIWVNSAH 1189 (1363)
T ss_pred             hHhhhccccCCCCcceeechhhhhccceeeeecCCCCccccccCCcccccceeEEeC-Cccc-cccccCCcceEEecccc
Confidence            22222111100       0                   0012358888999999999 6665 56777899999999999


Q ss_pred             ccccccCCcc-cccccc----------cCCccccCcEEEEcC
Q 010536          475 LFSGYYKRPD-LTEEVI----------VDGWFHTGDIGEWQP  505 (508)
Q Consensus       475 v~~gY~~~~~-~~~~~~----------~~gw~~TGDlg~~d~  505 (508)
                      -+.+|++..+ .....|          ..+|.||||+|++..
T Consensus      1190 nA~~~~~~~d~~~~~~fn~rl~~g~~~~~sy~RTG~LGFl~~ 1231 (1363)
T KOG3628|consen 1190 NASCSFTIGDELRSNHFNARLSSGDLLGKSYARTGDLGFLRR 1231 (1363)
T ss_pred             ccccccccCchhhhhhhhhhccccccccccceeeeeeeeeee
Confidence            8888875321 222223          134999999999753

>TIGR03089 conserved hypothetical protein TIGR03089

Probab=99.94  E-value=1.1e-25  Score=205.23  Aligned_cols=222  Identities=13%  Similarity=0.070  Sum_probs=164.1

Q ss_pred             HHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHh-CCCCCCCEEEEEcCCcHhHHHHHHHHHHcCC
Q 010536           49 FCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRS-RGVNPGDRCGIYGSNCPEWIIAMEACNSQAI  127 (508)
Q Consensus        49 l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~-~gv~~gd~Vai~~~n~~~~~~~~lA~~~~G~  127 (508)
                      |...++++|+++|+++.   +..++..+++||+||.++++++|++|.+ +|+++||+|+++++|+++++++++||+++|+
T Consensus         2 ~~~~~~~~p~~~al~~~---~~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~Gv~~GdrV~i~~~n~~~~~~~~~a~~~~G~   78 (227)
T TIGR03089         2 LSPLLAADPASPRLTFY---DDATGERVELSAATLANWVAKTANLLQDELDAEPGSRVALDLPAHWQTAVWLLAAWSTGV   78 (227)
T ss_pred             hhhhhhhCCCCcEEEEE---cCCCCeeEEEEHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCC
Confidence            56788899999999864   3222122579999999999999999998 7999999999999999999999999999999


Q ss_pred             EEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCceeeeHHHHHhc
Q 010536          128 TYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQL  207 (508)
Q Consensus       128 ~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (508)
                      +++|++             .++++++|++.+....+. .     .  +.++.+......... .......+.+|.+.+..
T Consensus        79 v~vp~n-------------~s~a~~~v~~~~~~~~~~-~-----~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  136 (227)
T TIGR03089        79 EVVLAG-------------DPDADVVVTGPDRLAAAA-G-----S--GEVVALSLDPLGRRV-AGELPPGVIDFAPEVRV  136 (227)
T ss_pred             EEEeCC-------------CCCCCEEEeCcchhhhcc-c-----C--CceEEEeccccccCC-CCCCCCcccchhhhhhc
Confidence            999996             689999999987766532 1     1  222332110000000 00001122456665553


Q ss_pred             CCCCCCCC-CCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHH-HHH
Q 010536          208 GTLDCELP-PKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQI-IET  285 (508)
Q Consensus       208 ~~~~~~~~-~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~-~~~  285 (508)
                      ......+. ...+++++.++||||+         +|.+++.+.    ..+     .+..+|+++ .+|++|.+|+. .++
T Consensus       137 ~~~~~~~~~~~~~~D~a~l~yTsg~---------~~~~~~~~~----~~~-----~l~~~D~~l-~~Pl~H~~gl~~~~~  197 (227)
T TIGR03089       137 HGDQFAPYEPPDATAPALVAGGGEW---------TGAELVAAA----RAA-----GLPPGDRVL-VLAWTDLEDFLATLL  197 (227)
T ss_pred             cCCCCCCCCCCCCCcceeeeccccc---------cHHHHHHHH----hhc-----CCCCCCeEE-ecCCCchHHHHHHHH
Confidence            32222222 4466899999999986         666666554    222     678899999 99999999997 478


Q ss_pred             HHHHcCcEEEEec-CCHHhHHHHhhhhcCe
Q 010536          286 HCIHKGCSIGFWR-GDVRYLMEDIQELKPT  314 (508)
Q Consensus       286 ~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t  314 (508)
                      .+++.|+++++++ +++..+++.|+++++|
T Consensus       198 ~~l~~G~t~v~~~rFd~~~~l~~i~~~~vT  227 (227)
T TIGR03089       198 APLAAGGSLVLVTHPDPARLDQIAETERVT  227 (227)
T ss_pred             HHhccCceEEEecCCCHHHHHHHHHhhcCC
Confidence            9999999988886 6999999999999987

This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501.

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=99.92  E-value=4.5e-24  Score=215.18  Aligned_cols=226  Identities=17%  Similarity=0.130  Sum_probs=163.1

Q ss_pred             CCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHH-HHHHHHHHHcCcEEEE
Q 010536          218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD-QIIETHCIHKGCSIGF  296 (508)
Q Consensus       218 ~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g-~~~~~~~l~~G~~~~~  296 (508)
                      ..++++.+++||||||.||+|.++|.++..........+..  .+...+|++++..+..+..+ +...+.++..|++++.
T Consensus        73 ~~~~~~~~~~TSGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~--~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  150 (422)
T TIGR02155        73 PREQVVRIHASSGTTGKPTVVGYTQNDIDTWSSVVARSIRA--AGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVP  150 (422)
T ss_pred             ChHHcEEEEECCCCCCCCeEeccCHHHHHHHHHHHHHHHHH--cCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEe
Confidence            45678889999999999999999999987765544333221  25678899888766543333 2245567788988887


Q ss_pred             ec-CCHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhcCCCCCcchhhhHHHHHH
Q 010536          297 WR-GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFS  375 (508)
Q Consensus       297 ~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  375 (508)
                      .+ .+++.+++.|+++++|+++++|+++..|++.+........                                   . 
T Consensus       151 ~~~~~~~~~~~~i~~~~~t~l~~~Ps~l~~L~~~~~~~~~~~~-----------------------------------~-  194 (422)
T TIGR02155       151 ISGGQTEKQVQLIQDFKPDIIMVTPSYMLNLLEELKRMGIDPA-----------------------------------Q-  194 (422)
T ss_pred             cCCCCHHHHHHHHHHHCCCEEEEcHHHHHHHHHHHHHcCCCcc-----------------------------------c-
Confidence            65 4789999999999999999999999998764332110000                                   0 


Q ss_pred             HHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCcceeeccCCCCcccCcccccc--CCeEEEEeecC
Q 010536          376 KIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPM--TTVEARLESVP  453 (508)
Q Consensus       376 ~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~s~G~p~--~~~~~~i~d~~  453 (508)
                             .++|.+++||+++++++.+.+++.||+.+++.||+||+++.........    ...|.++  ++..++|+|.+
T Consensus       195 -------~~lr~i~~~ge~l~~~~~~~i~~~~g~~v~~~YG~tE~~~~~~~~~~~~----~~~g~~~~~~~~~~eivd~~  263 (422)
T TIGR02155       195 -------TSLQVGIFGAEPWTNAMRKEIEARLGMKATDIYGLSEVIGPGVAMECVE----TQDGLHIWEDHFYPEIIDPH  263 (422)
T ss_pred             -------CceEEEEEeCCcCCHHHHHHHHHHhCCceEecccchhhcCCceeecccc----cCCCceEecCeeEEEEECCC
Confidence                   2799999999999999999999999999999999999853221111100    1123333  35777899833


Q ss_pred             CCCccCCCCCCCCeEEEecCcccccccCCcccccccccCCccccCcEEEEcCC
Q 010536          454 EMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQPM  506 (508)
Q Consensus       454 ~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDlg~~d~d  506 (508)
                      ++..++  +|+.|||++++.            +.+.|..+||+|||+|+++++
T Consensus       264 ~g~~v~--~Ge~Gelvvt~~------------~~~~~p~~ry~TGDl~~~~~~  302 (422)
T TIGR02155       264 TGEVLP--DGEEGELVFTTL------------TKEALPVIRYRTRDLTRLLPG  302 (422)
T ss_pred             CCCCCC--CCCeeEEEEecC------------CccccceeeEEcCcEEEEECC
Confidence            455444  559999999973            334456789999999999875

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family

Probab=99.89  E-value=2e-22  Score=198.46  Aligned_cols=191  Identities=16%  Similarity=0.167  Sum_probs=144.5

Q ss_pred             CCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccC--CCCcEEEEecChHHHHHHHH-HHHHHHcCcEEEE
Q 010536          220 TNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVC--SEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGF  296 (508)
Q Consensus       220 ~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~pl~~~~g~~~-~~~~l~~G~~~~~  296 (508)
                      +..++++|||||||.||+|.++|+++...+..+...+     ..  ...+++++.+|++|.+|+.+ .+.++..|+++++
T Consensus        95 ~~~~~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~  169 (386)
T TIGR02372        95 PTARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKIL-----GERPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQ  169 (386)
T ss_pred             CCceEEEECCCCCCCCceeEeeHHHHHHHHHHHHHHh-----CcCCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEe
Confidence            5578999999999999999999999998888776655     33  34468999999999999864 6778889999988


Q ss_pred             ec-CCHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhcCCCCCcchhhhHHHHHH
Q 010536          297 WR-GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFS  375 (508)
Q Consensus       297 ~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  375 (508)
                      .+ +++..+++.++.+  |+++++|.+++.+.+..                                         .++ 
T Consensus       170 ~~~~~~~~~l~~i~~~--t~~~~~P~~l~~l~~~~-----------------------------------------~~l-  205 (386)
T TIGR02372       170 LAAAPASGIMRHARPG--DLIVGTPFIWEQLADLD-----------------------------------------YRL-  205 (386)
T ss_pred             cCCCChHHHHHhhccC--CEEEECcHHHHHHHhhC-----------------------------------------cCC-
Confidence            76 4778888887654  89999999999885410                                         001 


Q ss_pred             HHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCC-ceeeecccccCCcceeeccCCCCcccCccccccCCeEEEEeecCC
Q 010536          376 KIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGA-PLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPE  454 (508)
Q Consensus       376 ~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~-~v~~~YG~TE~~~~~~~~~~~~~~~~~s~G~p~~~~~~~i~d~~~  454 (508)
                             ++++. ++||+++++++.+.+++. +. .+++.||+||+++++....      +++.|+++|+.++++ +  +
T Consensus       206 -------~slr~-i~gGa~l~~~l~~~~~~~-g~~~v~~~YG~TEt~~i~~~~~------~~~~~~~~p~~~~~~-~--~  267 (386)
T TIGR02372       206 -------PGVVG-VSSGAPSTAATWRCLLAA-GLARLLEVYGATETGGIGLREA------PDDPFRLLPDLACFA-D--T  267 (386)
T ss_pred             -------Cccee-EecCCCCCHHHHHHHHHh-cccchhheeccccccccccccC------CCCCcccCCCccccC-C--C
Confidence                   25665 678999999999999886 64 6999999999987654321      134678888876543 1  1


Q ss_pred             CCccCCCCCCCCeEEEecCcccccccCCcccccccccCCccccCcEEEEcCCCC
Q 010536          455 MGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQPMEL  508 (508)
Q Consensus       455 ~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDlg~~d~dG~  508 (508)
                      +.          +   .|+                  ..|++|||+|++|++|+
T Consensus       268 ~~----------~---~g~------------------~~~~~tgD~g~~d~~G~  290 (386)
T TIGR02372       268 LS----------S---AGL------------------ARRLDLQDRLAWDKDGG  290 (386)
T ss_pred             cc----------C---CCc------------------cceeecCceEEEcCCCc
Confidence            11          0   021                  12689999999999985

Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=99.86  E-value=3.3e-20  Score=187.31  Aligned_cols=224  Identities=18%  Similarity=0.117  Sum_probs=156.8

Q ss_pred             CCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHH-HHHHHHHcCcEEE
Q 010536          217 KKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQI-IETHCIHKGCSIG  295 (508)
Q Consensus       217 ~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~-~~~~~l~~G~~~~  295 (508)
                      ...++++.+.+||||||.||+|.+||..+..........+..  .++..+|+++...+..+..+.. ..+.+...|++++
T Consensus        83 ~~~~~i~~i~~TSGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~--~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi  160 (445)
T TIGR03335        83 ADWKDIYTIHETSGTSGTPKSFFLTWDDWKRYAEKYARSFVS--QGFTAGDRMVICASYGMNVGANTMTLAAREVGMSII  160 (445)
T ss_pred             CCHHHeEEEEeCCCCCCCcceeeecHHHHHHHHHHHHHHHHH--cCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEE
Confidence            345688899999999999999999999988776665544322  2667889999998887765554 3455677888765


Q ss_pred             EecCCHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhcCCCCCcchhhhHHHHHH
Q 010536          296 FWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFS  375 (508)
Q Consensus       296 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  375 (508)
                      .. ......++.++++++|.+.++|+.+..+++.+.......                                   .. 
T Consensus       161 ~~-~~~~~~~~~i~~~~~t~l~~~ps~ll~La~~~~~~g~~~-----------------------------------~~-  203 (445)
T TIGR03335       161 PE-GKCTFPIRIIESYRPTGIVASVFKLLRLARRMKAEGIDP-----------------------------------AE-  203 (445)
T ss_pred             cC-CchhHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCc-----------------------------------cc-
Confidence            33 344567899999999999999998887765433211000                                   00 


Q ss_pred             HHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCcceeeccCCCCcccCccccc--cCCeEEEEeecC
Q 010536          376 KIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVP--MTTVEARLESVP  453 (508)
Q Consensus       376 ~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~s~G~p--~~~~~~~i~d~~  453 (508)
                             .++|.+++||+++++++.+++++.+|+.+++.||+||++. +.....       ..|..  -+.+.+.|+| +
T Consensus       204 -------~~lr~ii~gGE~l~~~~r~~ie~~~g~~v~~~YG~TE~~~-~~~c~~-------~~g~h~~~d~~~vEIvD-p  267 (445)
T TIGR03335       204 -------SSIRRLVVGGESFADESRNYVEELWGCEVYNTYGSTEGTM-CGECQA-------VAGLHVPEDLVHLDVYD-P  267 (445)
T ss_pred             -------CcceEEEEcCCCCCHHHHHHHHHHhCCcEEecCChhhhhh-eEEecC-------CCCccccCCceEEEEEc-C
Confidence                   2799999999999999999999999999999999999863 222111       12333  3467899999 6


Q ss_pred             CCCccCCCCCCCCeEEEecCcccccccCCcccccccccCCccccCcEEEEc
Q 010536          454 EMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQ  504 (508)
Q Consensus       454 ~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDlg~~d  504 (508)
                      +++. ++.+|+.|||++++-.-..        +.+.+.==-|+|||++++.
T Consensus       268 ~~~~-~vp~Ge~GELvvT~L~~~~--------~r~~~PliRYrtgD~~~~~  309 (445)
T TIGR03335       268 RHQR-FLPDGECGRIVLTTLLKPG--------ERCGSLLINYDTEDTTVVI  309 (445)
T ss_pred             CCCC-CCcCCCceEEEEEecCCCC--------ccCCceEEEeecCceEEEe
Confidence            6653 3345699999998732100        0000000138999999863

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

>KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.71  E-value=1.7e-16  Score=167.34  Aligned_cols=332  Identities=13%  Similarity=0.058  Sum_probs=207.7

Q ss_pred             CCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHH
Q 010536           41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME  120 (508)
Q Consensus        41 ~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~l  120 (508)
                      .+.++...+.+.+...|.+.+..+... ....+.....||++....++.+++.|...|.-.|+.|++++..+.++++..+
T Consensus        34 ~~g~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~i~~~t~r~~~~~~n~~~q~l~~~~~~~~~~v~i~~~~~~d~~v~v~  112 (1032)
T KOG1178|consen   34 FMGTLEDSFRRELAEAPENTGHVIIPT-ASESGIIDSFTYRLIRLLSNIIAQFLVSLGSLRGTTVAIYMLPSVDLVVSVF  112 (1032)
T ss_pred             hhcchhhHHHHHHhhcccCCCceEeec-ccccccccchhhhhhhcccchhHHHhhhcccccCceEEEeccCcCCeeeeee
Confidence            456777889999999999999877644 3445555789999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCceeee
Q 010536          121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFS  200 (508)
Q Consensus       121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (508)
                      ++++.|..+++++|.++..++...+.+......-...+....+ +.....+.....-..+              ....-.
T Consensus       113 ~~~~~g~~~~~idp~~~~~e~~~~~~~ia~~~~s~~~~i~~~l-~i~~~~~~~~~~~~sv--------------~~~~~~  177 (1032)
T KOG1178|consen  113 AVLAAGLTFLPIDPSWPNSELAGYLMRIAHFLTSVELEIVRRL-NIIDILLNSLFPKLSV--------------ETIADS  177 (1032)
T ss_pred             ehhhcceEEEEecCCCcccccchHHHhhhhhheeccceehhhh-hhHHHHhhccccccch--------------hhccch
Confidence            9999999999999999921111111111100000000000000 0000000000000000              000001


Q ss_pred             HHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecCh-HHHH
Q 010536          201 WEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPL-AHIY  279 (508)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl-~~~~  279 (508)
                      +..+ ..............+..+++.||||+||.||+|.-+|..+.....+....+     .+...+++-..... .+..
T Consensus       178 f~~~-~~~~~~r~~~~~~~ds~~~l~~tSgs~G~pk~v~~~~~sl~~~fdw~~~~f-----~~t~s~~~~~~~~~~~~d~  251 (1032)
T KOG1178|consen  178 FQMV-LHNEDTREIRVGGNDSTALLSFTSGSTGVPKGVAGTHFSLANAFDWMFTTF-----PPTGSDRFTFKTSVYFDDT  251 (1032)
T ss_pred             hhhh-hccCCCcceeeecccccceEeecccccccccccchhHHHHHhhhhhccccC-----CcCccchhhhhheeecccc
Confidence            1111 111111222234567789999999999999999999999999998877766     66666654222222 2222


Q ss_pred             HHHHHHHHHHcCcEEEEecC----CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhh
Q 010536          280 DQIIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGN  355 (508)
Q Consensus       280 g~~~~~~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (508)
                      -..+..+.+..|..+..+..    ++..+.+.+++++++.++.+|++.++++.....-..                    
T Consensus       252 i~~~~~~~L~~~~~l~~p~~~~~~~~~~l~~~le~y~i~~~~~~~a~~~~l~~~~~~~~~--------------------  311 (1032)
T KOG1178|consen  252 IQKFIGALLFNGNNLLVPTATIKDTPGQLASTLERYGITVSHLLPAMCQLLLAILTTSLP--------------------  311 (1032)
T ss_pred             hHHHHhhHhhcCceeecccccCccchhhHHHHHHhhhheeeeechhhhhhhhhhcCcchh--------------------
Confidence            23345566677776666543    579999999999999999999998887653211000                    


Q ss_pred             hhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhc-CCceeeecccccCCcceee
Q 010536          356 MKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESCSGCFT  426 (508)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~  426 (508)
                                 .......++++.+.. +.|+....+|++..-.+...+...+ -.-...-|++++..+....
T Consensus       312 -----------~l~~~~~~~dl~~~~-~~Lkl~~~~~ep~~v~l~~s~~~~~~~~~~~~~y~s~~~~~~~s~  371 (1032)
T KOG1178|consen  312 -----------LLEHAFSLSDLLTKR-SCLKLVVLGGEPLLVSLYTSTFDLLAEIFFGLPYLSTDPTGLVSY  371 (1032)
T ss_pred             -----------hhhhhhhcccccccc-hhheeeeecCCccchhhhhhhhhcccceeeeecccCCCCccceeH
Confidence                       000000011110000 2689999999999998888665544 2222333888888776654

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=99.67  E-value=4.5e-15  Score=142.90  Aligned_cols=229  Identities=19%  Similarity=0.138  Sum_probs=161.2

Q ss_pred             CCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChH-HHHHHHHHHHHHHcCc
Q 010536          214 LPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLA-HIYDQIIETHCIHKGC  292 (508)
Q Consensus       214 ~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~-~~~g~~~~~~~l~~G~  292 (508)
                      ......+++..|--||||||+|+-+.+++..+......+.+.+...  +...+|++..+.-.. +..|+..-+++--.|+
T Consensus        84 ~~~~~~~~i~~ihaSSGTTGkPt~~~~t~~D~~~wa~~~aR~~~~~--g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~  161 (438)
T COG1541          84 DFAVPKEEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSLYSA--GVRKGDKVQNAYGYGLFTGGLGLHYGAERIGA  161 (438)
T ss_pred             cccccccceEEEEccCCCCCCceeeecCHHHHHHHHHHHHHHHHHc--cCCCCCEEEEEeeeccccCCchhHHHHHhhCE
Confidence            3344566777788899999999999999999988888888776443  667777776654321 1222333444444666


Q ss_pred             EEEEecC-CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhcCCCCCcchhhhHH
Q 010536          293 SIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDS  371 (508)
Q Consensus       293 ~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (508)
                      +++-... +.+.-++.++.+++|++.++|+.+..|++.+.....                                  +.
T Consensus       162 ~vip~~~g~~~~~~~l~~df~~tvI~~tps~~l~lae~~~~~G~----------------------------------~~  207 (438)
T COG1541         162 TVIPISGGNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEEGI----------------------------------DP  207 (438)
T ss_pred             EEEccCCccHHHHHHHHHhcCCcEEEEChHHHHHHHHHHHHcCC----------------------------------Ch
Confidence            6554443 889999999999999999999999999886654420                                  01


Q ss_pred             HHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCcce-eeccCCCCcccCccccccCCeEEEEe
Q 010536          372 LVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGC-FTSLADVFNMIGTVGVPMTTVEARLE  450 (508)
Q Consensus       372 ~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~-~~~~~~~~~~~~s~G~p~~~~~~~i~  450 (508)
                      .+         .++|.+++|+|++++++.+.+.+.||+..++.||+||..+.. ..+....     -.-..-+..-+.|+
T Consensus       208 ~~---------~~lk~~i~gaE~~see~R~~ie~~~g~~~~diYGltE~~g~g~~eC~~~~-----glhi~eD~~~~Ei~  273 (438)
T COG1541         208 DK---------LSLKKGIFGAEPWSEEMRKVIENRFGCKAFDIYGLTEGFGPGAGECTERN-----GLHIWEDHFIFEIV  273 (438)
T ss_pred             hh---------cceeEEEEecccCCHHHHHHHHHHhCCceeeccccccccCCccccccccc-----CCCcchhhceeeee
Confidence            11         289999999999999999999999999999999999997764 1111111     01113356778899


Q ss_pred             ecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccccCCccccCcEEEEcCC
Q 010536          451 SVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQPM  506 (508)
Q Consensus       451 d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDlg~~d~d  506 (508)
                      | |+.+ .+++.|+.|||+++.=.            ++.+.==-|+|||++.+.++
T Consensus       274 d-P~t~-e~l~dge~GelV~T~L~------------~~~~PlIRYrtgDit~i~~~  315 (438)
T COG1541         274 D-PETG-EQLPDGERGELVITTLT------------KEGMPLIRYRTGDITVILSD  315 (438)
T ss_pred             c-CCcC-ccCCCCCeeEEEEEecc------------ccCcceEEEEcCCeeEeccc
Confidence            9 4444 33345589999998621            11111114899999998763

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=99.67  E-value=2.1e-15  Score=154.86  Aligned_cols=406  Identities=15%  Similarity=0.127  Sum_probs=270.6

Q ss_pred             CCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHH-HHHhCCCCCCCEEEEEcCCc--HhHH
Q 010536           40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGS-AMRSRGVNPGDRCGIYGSNC--PEWI  116 (508)
Q Consensus        40 ~~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~-~L~~~gv~~gd~Vai~~~n~--~~~~  116 (508)
                      ..+..+..+++.+-..++...|.+..   |.++. ...+||..+..++.++|+ .|-+-|..++|+|.+++..+  .+++
T Consensus        91 ~a~~d~~avl~~~~nhs~~~ta~i~i---d~kgk-~~~~twdkl~~rA~k~a~~~l~ksgl~~~~~vvL~Y~~~e~ie~~  166 (1363)
T KOG3628|consen   91 MALTDIIAVLRYRRNHSATSTAHICI---DKKGK-ATSITWDKLLNRAEKVAHVELNKSGLKPGDRVVLYYRKCEAIEFL  166 (1363)
T ss_pred             hhhcchHHHHHhhccCCCCCceEEEE---cCCCc-eeeeeHHHHHHHHHhhccHHhhccCCCCCcEEEEEEEhhhhhHHh
Confidence            35567778888888889999999998   77777 789999999999999999 56667999999999999887  8999


Q ss_pred             HHHHHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCc
Q 010536          117 IAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGV  196 (508)
Q Consensus       117 ~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (508)
                      +..++|..+|.+++|+.+..+.+++..+++....+++++...............              ...      ...
T Consensus       167 isl~gc~l~g~~~vp~~e~~s~~el~~i~~~~~~~~~l~t~a~~r~~~~~~~~~--------------s~~------k~v  226 (1363)
T KOG3628|consen  167 ISLFGCFLLGIVAVPLSELSSSEELKDIVNPTPERVALTTEAGERAFINDNSPV--------------SLA------KAV  226 (1363)
T ss_pred             hhhccccccceeeccchhhhhhhhhhcccCCCccceEeehhhhHHHhhhccCcc--------------cHH------HHH
Confidence            999999999999999999999999999999999999998876555443222100              000      000


Q ss_pred             eeeeHHHHHhcCC-CCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhh---------------hcc
Q 010536          197 SCFSWEEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV---------------VTG  260 (508)
Q Consensus       197 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~---------------~~~  260 (508)
                      .++...++-.... .....+..... ..+|-||.+++|.--|++++|. ++.+...+.....               ...
T Consensus       227 ~~w~t~~~k~~~~~~k~~~P~~~~~-~~~i~~t~s~l~~~~g~V~~~~-~~~q~r~~~~~~nt~Pa~~~~~~~~~~~~~v  304 (1363)
T KOG3628|consen  227 AWWKTNDFKGNYTKDKIKKPRMQLP-YGYIEFTRSPLGNLIGVVYKHK-FLPQMRVLTSIPNTNPARFAAAFYGCLHAHV  304 (1363)
T ss_pred             HhhhcccccceeehhhccCCceeee-eEEEEEeccchhceeeeEeecc-cccchhhhhhccCcChHHHHHhhhcchhhhc
Confidence            0111111100000 01111111222 7899999999999999999998 6555544332211               011


Q ss_pred             ccCCCCcEEEEecChHHHHHHHH-HHHHHHcCcEEEEecC----CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhh
Q 010536          261 KVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKIS  335 (508)
Q Consensus       261 ~~~~~~~~~l~~~pl~~~~g~~~-~~~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~  335 (508)
                      ......+.++.........|++. .+.+++.|.+.+.++.    .+..+...+.+++.+++..--..+++....++..  
T Consensus       305 ~~~~~~~~~l~~~~~s~~lGlilGV~~alfsg~c~i~~p~~~l~~pG~~~~l~~k~R~~~~ltd~~~Lkq~~~ny~~~--  382 (1363)
T KOG3628|consen  305 FPVPSEDVLLTNLDPSQQLGLILGVLVALFSGYCTIGCPKEVLKPPGLIANLITKYRATWSLTDYAGLKQPVYNYQED--  382 (1363)
T ss_pred             cccCcccceeeccCcccccchhhhhhhhhhcCceeecCchhhcCCCcchhhhhccceeEEEeecccccCcccccccCC--
Confidence            23456667777777777778775 7789999999988764    7788999999999999988777666654332221  


Q ss_pred             cCChhHHHHHHHHHHHHhhhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhc--------
Q 010536          336 SGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS--------  407 (508)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~--------  407 (508)
                                                      ....+++.+-.+.-.+++|.+.+....++.+..+.....+        
T Consensus       383 --------------------------------p~a~~s~~k~~t~d~sslk~C~Vtc~~vd~~~~~ivs~~wlk~lg~~~  430 (1363)
T KOG3628|consen  383 --------------------------------PKATLSFKKYKTPDLSSLKGCMVTCTAVDTEFQEIVSDRWLKPLGETN  430 (1363)
T ss_pred             --------------------------------cccccchhhccCCCccceeeeEEeeeecchHHHHHHHHhhcccccCcC
Confidence                                            0111111111111124899999999998887766554432        


Q ss_pred             --------------CCceeeecccccCCcceeeccCCC-C----------------------------cccCccccccCC
Q 010536          408 --------------GAPLTQGYGLTESCSGCFTSLADV-F----------------------------NMIGTVGVPMTT  444 (508)
Q Consensus       408 --------------~~~v~~~YG~TE~~~~~~~~~~~~-~----------------------------~~~~s~G~p~~~  444 (508)
                                    |.-....-+++|.+......+... .                            .....+|...||
T Consensus       431 ~~~~~~p~l~ll~hGgi~is~k~~~~~~~~~~r~p~~~~~~~~~e~ll~~~~L~~~~V~v~~e~~is~~s~kd~~~i~~g  510 (1363)
T KOG3628|consen  431 VKVVDFPILCLLWHGGIPISFKDWMEIGTVSIRRPEQMADTLPGEGLLSKEALKLNEVEVDTEDDISSLSVKDVLCIMPG  510 (1363)
T ss_pred             cceeechhhhhhhcCceEEEeccchhhhcccccCcccccccCccceeeeccccccceEEEcchhhhhhcCccccceeccc
Confidence                          222222233344443332222100 0                            001135666665


Q ss_pred             -eEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCccccccccc-------------CCccccCcEEEEcCCC
Q 010536          445 -VEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV-------------DGWFHTGDIGEWQPME  507 (508)
Q Consensus       445 -~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~~-------------~gw~~TGDlg~~d~dG  507 (508)
                       +.+.|++ +|.+ .-+..+++|||||.++++..+|+.-+..+...|.             ..|.|||-+|++..++
T Consensus       511 ~~t~~vv~-~~t~-~LC~~~eVGEIwVsS~~~~~~~~al~~~t~~~F~~~~~~s~~~~~~n~~FmRtGLlGFv~~gk  585 (1363)
T KOG3628|consen  511 DATLAVVN-PDTN-QLCKTDEVGEIWVSSNSLGKLFYALDKQTENTFKATPVESSGKPPSNVPFMRTGLLGFVHNGK  585 (1363)
T ss_pred             ceEEEEeC-CCcc-cccccCcceeEEEecCCcccceeeccccccceEEeeeccccCCCCccchhhhhcceeeeeCCe
Confidence             5556666 4444 5555779999999999999999987777766661             1289999999998765

>TIGR02304 aden_form_hyp probable adenylate-forming enzyme

Probab=99.33  E-value=1.2e-10  Score=115.51  Aligned_cols=148  Identities=16%  Similarity=0.142  Sum_probs=100.6

Q ss_pred             EEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEec-ChHHHHHHHHHHHHHHcC-cEEEEec--
Q 010536          223 STIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFL-PLAHIYDQIIETHCIHKG-CSIGFWR--  298 (508)
Q Consensus       223 ~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-pl~~~~g~~~~~~~l~~G-~~~~~~~--  298 (508)
                      ..+..||||||.|-.+.++................+  .+...++++...+ --.+.+..      +... ..+....  
T Consensus       102 ~~v~~TSGSSG~p~~f~~~~~~~~~~~a~~~~~~~~--~g~~~g~r~a~~~~~~~~ly~~------~~~~~~~~~~~~l~  173 (430)
T TIGR02304       102 ISVGLSSGTSGRRGLFVVSPEEQQMWAGGILAKVLP--DGLFAKHRIAFFLRADNNLYQS------VNNRWISLDFFDLL  173 (430)
T ss_pred             EEEEECCCCCCCceEEEECHHHHHHHHHHHHhhhCc--cccccCCcEEEEEccChhHHHH------HHhccceeeecCCC
Confidence            457779999999999999988765544433222212  2344444444332 11122211      1111 1122222  


Q ss_pred             CCHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhcCCCCCcchhhhHHHHHHHHH
Q 010536          299 GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIR  378 (508)
Q Consensus       299 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  378 (508)
                      .+.+..++.|.+++|+++.+.|+.+..|++..+....  .                                        
T Consensus       174 ~~~~~~l~~L~~~~P~~L~g~pS~l~~LA~~~~~~~l--~----------------------------------------  211 (430)
T TIGR02304       174 APFQAHIKRLNQRKPSIIVAPPSVLRALALEVMEGEL--T----------------------------------------  211 (430)
T ss_pred             cCHHHHHHHHHHhCCCEEEEcHHHHHHHHHHHHhcCC--C----------------------------------------
Confidence            2788999999999999999999999999875443210  0                                        


Q ss_pred             HHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCccee
Q 010536          379 EAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCF  425 (508)
Q Consensus       379 ~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~  425 (508)
                          ..++.++++||+++++..+.+++.||++|++.||+|| |.++.
T Consensus       212 ----~~~k~ii~~~E~l~~~~r~~Ie~~fg~~V~~~YG~tE-g~la~  253 (430)
T TIGR02304       212 ----IKPKKVISVAEVLEPQDRELIRNVFKNTVHQIYQATE-GFLAS  253 (430)
T ss_pred             ----CCceEEEEccCCCCHHHHHHHHHHhCCCeeEccCCch-hheEE
Confidence                1689999999999999999999999999999999999 55443

Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.

>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria

Probab=98.61  E-value=5.6e-06  Score=80.50  Aligned_cols=223  Identities=15%  Similarity=0.155  Sum_probs=129.3

Q ss_pred             CCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHH---HHH--HHHHHHHHHcCc
Q 010536          218 KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAH---IYD--QIIETHCIHKGC  292 (508)
Q Consensus       218 ~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~---~~g--~~~~~~~l~~G~  292 (508)
                      ..+++..++-||||||.|--+.+.+..+..+..++...+..........-.++...|-..   .++  .......+..+.
T Consensus        87 ~~e~~~~~~tSSGTtG~~S~i~~D~~t~~~~~~~~~~~~~~~~~~~~~~~~il~l~p~~~~~~~~~~~~~~~~~~~~~~~  166 (365)
T PF04443_consen   87 PEEEVEKVFTSSGTTGQPSRIFRDRETAERQQKSLNKIFQHFLGPSRLPMLILDLSPSPENRNSFSARYAGILGELFFGS  166 (365)
T ss_pred             ChhhheeEEECCCCCCCCcEEEECHHHHHHHHHHHHHHHHhhcccccCCeEEEEecCCcccccchHHHHHHHHhhcccCc
Confidence            345677889999999998666667666766666655554322112222233444334321   111  112223344555


Q ss_pred             EEEEecC--CHHhHHHHhh----hhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhcCCCCCcch
Q 010536          293 SIGFWRG--DVRYLMEDIQ----ELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAA  366 (508)
Q Consensus       293 ~~~~~~~--~~~~~~~~i~----~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (508)
                      ...+-..  +.+.++..+.    +.++..+++.|.++..++..+.+......                            
T Consensus       167 ~~~l~~~~ld~~~~~~~L~~~~~~~~pv~l~Gftf~~~~~~~~l~~~~~~~~----------------------------  218 (365)
T PF04443_consen  167 RFALDNDELDLEGLIEALFRAEHSGEPVLLFGFTFFIWFLLDELEERGIRFR----------------------------  218 (365)
T ss_pred             eeeecCCccCHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHHHHhcCCccc----------------------------
Confidence            5333222  5666665554    56789999999988877665443321111                            


Q ss_pred             hhhHHHHHHHHHHHhCCcEEEEEEec------CCCC-HHHHHHHHHhcCC----ceeeecccccCCcceeeccCCCCccc
Q 010536          367 PLLDSLVFSKIREAFGGRLQAMLSGA------APLP-IHVEEFLRVTSGA----PLTQGYGLTESCSGCFTSLADVFNMI  435 (508)
Q Consensus       367 ~~~~~~~l~~~~~~~~~~l~~i~~gG------~~~~-~~~~~~~~~~~~~----~v~~~YG~TE~~~~~~~~~~~~~~~~  435 (508)
                             ++       ...+.+-.||      +.++ .++.+.+++.||+    .+++.||+||............    
T Consensus       219 -------L~-------~~s~vi~~GGwK~~~~e~v~r~ef~~~l~~~~Gv~~~~~i~~~ygmtEl~s~~~~~~~~~----  280 (365)
T PF04443_consen  219 -------LP-------KGSIVIHGGGWKGRRKEAVSREEFYARLQEVFGVIPIENIYDMYGMTELNSQAYECGHGH----  280 (365)
T ss_pred             -------CC-------CCCEEEeCCCCCccccCccCHHHHHHHHHHHHCCCCHHHeeeeeeccccchhheeCCCCc----
Confidence                   11       2456677776      3454 5777788888887    6999999999775544332211    


Q ss_pred             CccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccccCCccccCcEEEEcCC
Q 010536          436 GTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQPM  506 (508)
Q Consensus       436 ~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDlg~~d~d  506 (508)
                        .  +.|.- +.|.| +++ ..++..|+.|-|.+-.+... .|.            +..-|.|+|.+..+
T Consensus       281 --~--~~p~w-V~iRD-p~t-l~~~~~Ge~Gli~vidl~~~-s~p------------~~IlTeDlGvl~~~  331 (365)
T PF04443_consen  281 --F--HVPPW-VIIRD-PET-LEPLPPGETGLIQVIDLANT-SYP------------GFILTEDLGVLHGD  331 (365)
T ss_pred             --c--cCCCe-EEEEC-CCC-CcCCCCCCeeEEEEEccccc-CCC------------cEEEEcceeeecCC
Confidence              1  12222 66778 443 34566679999998876432 221            23568888877654

LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence

>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin

Probab=96.06  E-value=0.028  Score=58.22  Aligned_cols=32  Identities=25%  Similarity=0.148  Sum_probs=25.4

Q ss_pred             CCCCCCeEEEEecCCCCCC-cceeecchHHHHH
Q 010536          216 PKKKTNISTIMYTSGTTGE-PKGVVLTNQAIVA  247 (508)
Q Consensus       216 ~~~~~~~~~i~~TSGTTG~-pK~v~~sh~~~~~  247 (508)
                      ...++.+.+...||||||. ||-|.+|...+..
T Consensus        76 vL~~~~~~~f~~TSGTTg~~~K~IP~T~~~l~~  108 (528)
T PF03321_consen   76 VLTPGPPIYFALTSGTTGGKSKLIPYTKEFLKE  108 (528)
T ss_dssp             CTSSS--SEEEEEEEEETTEEEEEEESHHHHHH
T ss_pred             CCCCCCCCeEEeCCCCCCCCCceeeccHHHHHH
Confidence            3455678899999999999 9999999887655

The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A.

>PLN02247 indole-3-acetic acid-amido synthetase

Probab=95.64  E-value=1.3  Score=46.18  Aligned_cols=30  Identities=27%  Similarity=0.433  Sum_probs=25.0

Q ss_pred             CCCeEEEEecCCCCC-CcceeecchHHHHHH
Q 010536          219 KTNISTIMYTSGTTG-EPKGVVLTNQAIVAE  248 (508)
Q Consensus       219 ~~~~~~i~~TSGTTG-~pK~v~~sh~~~~~~  248 (508)
                      ++.+.++.-|||||| .+|-|.+|...+-..
T Consensus        88 ~~pi~~F~~SSGTT~g~~K~IP~t~e~l~~~  118 (606)
T PLN02247         88 AQPITELLTSSGTSGGQPKLMPSTAEELDRK  118 (606)
T ss_pred             CCCcceeeccCCCCCCceeEeeccHHHHHHH
Confidence            567788999999995 899999998876543

>PRK09188 serine/threonine protein kinase; Provisional

Probab=95.06  E-value=0.011  Score=57.73  Aligned_cols=20  Identities=20%  Similarity=0.109  Sum_probs=17.3

Q ss_pred             cccCCccccCcEEEE-cCCCC
Q 010536          489 VIVDGWFHTGDIGEW-QPMEL  508 (508)
Q Consensus       489 ~~~~gw~~TGDlg~~-d~dG~  508 (508)
                      .+.+|||+|||+|++ |+||+
T Consensus       205 ~~~dgW~~TGDlg~~~d~dG~  225 (365)
T PRK09188        205 LPSRIWLATGKKVYNFITRGL  225 (365)
T ss_pred             cccCcEEeCCCEEEEEcCCCe
Confidence            347899999999998 79986

>PLN02620 indole-3-acetic acid-amido synthetase

Probab=94.47  E-value=1.6  Score=45.43  Aligned_cols=30  Identities=27%  Similarity=0.294  Sum_probs=25.0

Q ss_pred             CCCCeEEEEecCCCCC-CcceeecchHHHHH
Q 010536          218 KKTNISTIMYTSGTTG-EPKGVVLTNQAIVA  247 (508)
Q Consensus       218 ~~~~~~~i~~TSGTTG-~pK~v~~sh~~~~~  247 (508)
                      .++.+.++.-|||||| .+|-|.+|+..+..
T Consensus        99 ~~~pi~~F~~SSGTT~g~~K~IP~t~e~l~~  129 (612)
T PLN02620         99 CSKPISEFLTSSGTSGGERKLMPTIEEELGR  129 (612)
T ss_pred             CCCChhhhhhcCCCCCCceeeeecCHHHHHH
Confidence            4566778899999997 59999999987665

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=94.37  E-value=0.31  Score=48.26  Aligned_cols=93  Identities=10%  Similarity=-0.018  Sum_probs=76.2

Q ss_pred             CceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHh--HHHHHHHHHHcCCEEEeccCCCCHHHHHHHHHhcCce
Q 010536           74 PYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPE--WIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVS  151 (508)
Q Consensus        74 ~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~--~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~  151 (508)
                      ...-+|+.|+...+..+|+.|...|..+||+|.....-+..  -.-..+|+.++|+.++|+.+ -..++...++++.++.
T Consensus       106 t~~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~~-g~~~~~~~l~~df~~t  184 (438)
T COG1541         106 TVFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPISG-GNTERQLELMKDFKPT  184 (438)
T ss_pred             eeeecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccCC-ccHHHHHHHHHhcCCc
Confidence            34578999999999999999999999999999888773322  16788999999999999988 3466677789999999


Q ss_pred             EEEEcCCChhhHhhcC
Q 010536          152 IAFVQENKIPSILSCL  167 (508)
Q Consensus       152 ~vi~~~~~~~~~~~~~  167 (508)
                      ++.+.......+.+..
T Consensus       185 vI~~tps~~l~lae~~  200 (438)
T COG1541         185 VIAATPSYLLYLAEEA  200 (438)
T ss_pred             EEEEChHHHHHHHHHH
Confidence            9999988766555444

>PLN02249 indole-3-acetic acid-amido synthetase

Probab=94.36  E-value=0.81  Score=47.88  Aligned_cols=30  Identities=27%  Similarity=0.312  Sum_probs=25.2

Q ss_pred             CCCCCeEEEEecCCCC-CCcceeecchHHHH
Q 010536          217 KKKTNISTIMYTSGTT-GEPKGVVLTNQAIV  246 (508)
Q Consensus       217 ~~~~~~~~i~~TSGTT-G~pK~v~~sh~~~~  246 (508)
                      ..++.+.+..-||||| |.+|-|.+|...+-
T Consensus        97 L~~~pi~~f~~SSGTT~g~~K~IP~T~~~l~  127 (597)
T PLN02249         97 LSSHPITEFLTSSGTSAGERKLMPTIEEDID  127 (597)
T ss_pred             eCCCchhhhcccCCCCCCceeEEeccHHHHH
Confidence            3457778899999999 89999999997665

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=83.97  E-value=8  Score=39.34  Aligned_cols=83  Identities=18%  Similarity=0.138  Sum_probs=63.6

Q ss_pred             eEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHh--HHHHHHHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEE
Q 010536           76 VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPE--WIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIA  153 (508)
Q Consensus        76 ~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~--~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~v  153 (508)
                      ..+|.+++...+..++..+...|+.+||++.+..+....  ....++++..+|+.+++...   ......+++..++.++
T Consensus       104 v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~~---~~~~~~~i~~~~~t~l  180 (445)
T TIGR03335       104 FFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEGK---CTFPIRIIESYRPTGI  180 (445)
T ss_pred             eeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCCc---hhHHHHHHHHhCCCEE
Confidence            467999999988888888888999999999998876543  23456788899998876653   2345677889999988


Q ss_pred             EEcCCChh
Q 010536          154 FVQENKIP  161 (508)
Q Consensus       154 i~~~~~~~  161 (508)
                      +.......
T Consensus       181 ~~~ps~ll  188 (445)
T TIGR03335       181 VASVFKLL  188 (445)
T ss_pred             EECHHHHH
Confidence            87655433

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=83.76  E-value=6.5  Score=39.60  Aligned_cols=88  Identities=16%  Similarity=0.095  Sum_probs=66.9

Q ss_pred             EeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcH--hHHHHHHHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEE
Q 010536           77 WLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCP--EWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAF  154 (508)
Q Consensus        77 ~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~--~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi  154 (508)
                      .+|..++......++..+...|+++||++........  ......+++..+|+.++++++.. .+.+...++..++.+++
T Consensus        94 ~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~i~~~~~t~l~  172 (422)
T TIGR02155        94 GYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPISGGQ-TEKQVQLIQDFKPDIIM  172 (422)
T ss_pred             ccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecCCCC-HHHHHHHHHHHCCCEEE
Confidence            4677787777777777888889999999887665442  22334677889999999887754 57788899999999999


Q ss_pred             EcCCChhhHhh
Q 010536          155 VQENKIPSILS  165 (508)
Q Consensus       155 ~~~~~~~~~~~  165 (508)
                      ........+.+
T Consensus       173 ~~Ps~l~~L~~  183 (422)
T TIGR02155       173 VTPSYMLNLLE  183 (422)
T ss_pred             EcHHHHHHHHH
Confidence            98876655443

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	508
3nyq_A	505	Malonyl-Coa Ligase Ternary Product Complex With Met		2e-18
1ult_A	541	Crystal Structure Of Tt0168 From Thermus Thermophil		6e-18
4g37_A	555	Structure Of Cross-Linked Firefly Luciferase In Sec		9e-17
4g36_A	555	Photinus Pyralis Luciferase In The Adenylate-Formin		7e-16
1ba3_A	550	Firefly Luciferase In Complex With Bromoform Length		7e-16
3iep_A	551	Firefly Luciferase Apo Structure (P41 Form) Length		7e-16
3a9u_A	536	Crystal Structures And Enzymatic Mechanisms Of A Po		9e-15
3tsy_A	979	4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr		3e-14
3t5b_A	396	Crystal Structure Of N-Terminal Domain Of Facl13 Fr		1e-13
3r44_A	517	Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas		1e-13
4fuq_A	503	Crystal Structure Of Apo Matb From Rhodopseudomonas		2e-13
2d1q_A	548	Crystal Structure Of The Thermostable Japanese Fire		3e-13
2d1s_A	548	Crystal Structure Of The Thermostable Japanese Fire		4e-13
2d1t_A	548	Crystal Structure Of The Thermostable Japanese Fire		5e-13
3qya_A	582	Crystal Structure Of A Red-Emitter Mutant Of Lampyr		2e-11
4fut_A	503	Crystal Structure Of Atp Bound Matb From Rhodopseud		5e-11
4gxr_A	503	Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len		6e-11
4gxq_A	506	Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer		6e-11
3ivr_A	509	Crystal Structure Of Putative Long-Chain-Fatty-Acid		5e-10
3g7s_A	549	Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Li		5e-09
3ipl_A	501	Crystal Structure Of O-Succinylbenzoic Acid-Coa Lig		5e-07
3pbk_A	583	Structural And Functional Studies Of Fatty Acyl-Ade		3e-05
2v7b_A	529	Crystal Structures Of A Benzoate Coa Ligase From Bu		6e-05
2qvx_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATIO		9e-05
1pg3_A	652	Acetyl Coa Synthetase, Acetylated On Lys609 Length		1e-04
2p2m_A	652	Acetyl-Coa Synthetase, R194a Mutation Length = 652		1e-04
2p2q_A	652	Acetyl-Coa Synthetase, R584e Mutation Length = 652		1e-04
2vsq_A	1304	Structure Of Surfactin A Synthetase C (Srfa-C), A N		1e-04
2p2j_A	652	Acetyl-Coa Synthetase, K609a Mutation Length = 652		1e-04
2p2f_A	652	Acetyl-coa Synthetase, Wild-type With Acetate, Amp,		1e-04
2p20_A	652	Acetyl-Coa Synthetase, R584a Mutation Length = 652		1e-04
2p2b_A	652	Acetyl-coa Synthetase, V386a Mutation Length = 652		1e-04

>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505

Iteration: 1
 Score = 90.5 bits (223), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 100/351 (28%), Positives = 143/351 (40%), Gaps = 82/351 (23%)
Query: 182 NVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPK----KKTNIST------------- 224
           N  S  K+ A  L  S  S    L L   D ELPP     ++ ++               
Sbjct: 99  NPKSGDKELAHILSDSAPS----LVLAPPDAELPPALGALERVDVDVRARGAVPEDGADD 154
Query: 225 -----IMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIY 279
                ++YTSGTTG PKG V+  +A+   + ++   +  TG     ED     LPL H++
Sbjct: 155 GDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTG-----EDVLVQGLPLFHVH 209
Query: 280 DQIIET-HCIHKGCSIGFWRGDVRYLMEDI-QELK--PTMFSGVPRVYDRIYTGISNKIS 335
             ++     + +G S+   R   R+  E   +EL    TM  GVP +Y RI    +  + 
Sbjct: 210 GLVLGILGPLRRGGSV---RHLGRFSTEGAARELNDGATMLFGVPTMYHRI----AETLP 262
Query: 336 SGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPL 395
           +   L+K L                                     G RL  ++SG+A L
Sbjct: 263 ADPELAKALA------------------------------------GARL--LVSGSAAL 284
Query: 396 PIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEM 455
           P+H  E +   +G  + + YG+TE+        AD     GTVGVP+  VE RL      
Sbjct: 285 PVHDHERIAAATGRRVIERYGMTETLMNTSVR-ADGEPRAGTVGVPLPGVELRLVEEDGT 343
Query: 456 GYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV-DGWFHTGDIGEWQP 505
              AL     GEI +RG  LF+ Y  RPD T      DG+F TGD+    P
Sbjct: 344 PIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDP 394

>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541

Iteration: 1
 Score = 89.0 bits (219), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 119/478 (24%), Positives = 181/478 (37%), Gaps = 96/478 (20%)
Query: 46  WQFFCDSAKRIPNNQMLGGRK--VSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGD 103
           W F   +A        L GRK  VS    G     TY EVY  A R    +R+ GV  GD
Sbjct: 21  WDFLERAAA-------LFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGD 73
Query: 104 RCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSI 163
           R    G N    + A  A              L    + +I+NHAE  +     N +P +
Sbjct: 74  RVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLV 133
Query: 164 LSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNIS 223
            +        LKT+  F  +     +          ++EE L        +P +    ++
Sbjct: 134 EAIRGE----LKTVQHFVVMDEKAPE-------GYLAYEEALGEEADPVRVPERAACGMA 182
Query: 224 TIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII 283
              YT+GTTG PKGVV +++A+V   L+     +V G   SE+D     +P+ H+    +
Sbjct: 183 ---YTTGTTGLPKGVVYSHRALVLHSLAAS---LVDGTALSEKDVVLPVVPMFHVNAWCL 236
Query: 284 ETHCIHKGCS--IGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALS 341
                  G    +   R D   L+E       T  +GVP V    +  +++ + S G   
Sbjct: 237 PYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTV----WLALADYLESTG--- 289
Query: 342 KKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEE 401
                    ++L  +++ +    AAP   SL+          R + M             
Sbjct: 290 ---------HRLKTLRRLVVGGSAAP--RSLI---------ARFERM------------- 316
Query: 402 FLRVTSGAPLTQGYGLTES--------CSGCFTSLA--DVFNMIGTVGVPMTTVEARLES 451
                 G  + QGYGLTE+              SL+  +   +    G+P+  V  RL  
Sbjct: 317 ------GVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLV--RLRV 368
Query: 452 VPEMGYDALSSVPR-----GEICLRGNTLFSGYYKRPDLTEEVIV-DGWFHTGDIGEW 503
             E G      VP+     GE+ L+G  +  GYY   + T   +  DG+F TGDI  W
Sbjct: 369 ADEEG----RPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVW 422

>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555

Iteration: 1
 Score = 85.1 bits (209), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 101/460 (21%), Positives = 173/460 (37%), Gaps = 106/460 (23%)
Query: 76  VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDT 135
           V +TY E ++ ++R   AM+  G+N   R  +   N  ++ + +       +   P  D 
Sbjct: 54  VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVSSENSLQFFMPVLGALFIGVAVAPANDC 113
Query: 136 LGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELG 195
                +   +N ++ ++ FV +  +  IL+   +  +  K I+  +              
Sbjct: 114 YNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTD----------- 162
Query: 196 VSCFSWEEFLQLGT-LDCELPP------------KKKTNISTIMYTSGTTGEPKGVVLTN 242
                ++ F  + T +   LPP             +   I+ IM +SG+TG PKGV L +
Sbjct: 163 -----YQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPH 217
Query: 243 QAIVAEVLSV-DQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGF-WRGD 300
           +A+        D +F   G   + +    S +P  H +        +  G  +   +R +
Sbjct: 218 RALAVRFSHARDPIF---GNQIAPDTAILSVVPFHHGFGMFTTLGYLISGFRVVLMYRFE 274
Query: 301 VRYLMEDIQELK-------PTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKL 353
               +  +Q+ K       PT+FS + +                                
Sbjct: 275 EELFLRSLQDYKIQSALLVPTLFSFLAK-------------------------------- 302
Query: 354 GNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAP-LT 412
                       + L+D    S + E        + SG APL   V E +      P + 
Sbjct: 303 ------------STLIDKYDLSNLHE--------IASGGAPLSKEVGEAVAKRFHLPGIR 342
Query: 413 QGYGLTESCSGCF-TSLADVFNMIGTVGVPMTTVEAR---LESVPEMGYDALSSVPRGEI 468
           QGYGLTE+ S    T   D  +  G VG  +   EA+   L++   +G +      RGE+
Sbjct: 343 QGYGLTETTSAILITPKGD--DKPGAVGKVVPFFEAKVVDLDTGKTLGVNQ-----RGEL 395
Query: 469 CLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGDIGEWQPME 507
            +RG  + SGY   P+ T  +I  DGW H+GDI  W   E
Sbjct: 396 SVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDE 435

>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555

Iteration: 1
 Score = 82.0 bits (201), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 103/452 (22%), Positives = 173/452 (38%), Gaps = 90/452 (19%)
Query: 76  VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDT 135
           V +TY E ++ ++R   AM+  G+N   R  +   N  ++ + +       +   P  D 
Sbjct: 54  VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDI 113
Query: 136 LGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELG 195
                +   +N ++ ++ FV +  +  IL+   +  +  K I+  +              
Sbjct: 114 YNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTD----------- 162
Query: 196 VSCFSWEEFLQLGT-LDCELPP------------KKKTNISTIMYTSGTTGEPKGVVLTN 242
                ++ F  + T +   LPP             +   I+ IM +SG+TG PKGV L +
Sbjct: 163 -----YQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPH 217
Query: 243 Q-AIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGF-WRGD 300
           + A V    + D +F   G     +    S +P  H +        +  G  +   +R +
Sbjct: 218 RTACVRFSHARDPIF---GNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFE 274
Query: 301 VRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGM 360
               +  +Q+ K                     I S   L   LF F             
Sbjct: 275 EELFLRSLQDYK---------------------IQSA-LLVPTLFSFF------------ 300
Query: 361 PQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAP-LTQGYGLTE 419
                + L+D    S + E        + SG APL   V E +      P + QGYGLTE
Sbjct: 301 ---AKSTLIDKYDLSNLHE--------IASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTE 349
Query: 420 SCSGCFTSLADVFNMIGTVGVPMTTVEAR---LESVPEMGYDALSSVPRGEICLRGNTLF 476
           + S    +  +  +  G VG  +   EA+   L++   +G +      RGE+C+RG  + 
Sbjct: 350 TTSAILIT-PEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQ-----RGELCVRGPMIM 403
Query: 477 SGYYKRPDLTEEVI-VDGWFHTGDIGEWQPME 507
           SGY   P+ T  +I  DGW H+GDI  W   E
Sbjct: 404 SGYVNNPEATNALIDKDGWLHSGDIAYWDEDE 435

>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550

Iteration: 1
 Score = 82.0 bits (201), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 103/452 (22%), Positives = 173/452 (38%), Gaps = 90/452 (19%)
Query: 76  VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDT 135
           V +TY E ++ ++R   AM+  G+N   R  +   N  ++ + +       +   P  D 
Sbjct: 49  VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDI 108
Query: 136 LGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELG 195
                +   +N ++ ++ FV +  +  IL+   +  +  K I+  +              
Sbjct: 109 YNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTD----------- 157
Query: 196 VSCFSWEEFLQLGT-LDCELPP------------KKKTNISTIMYTSGTTGEPKGVVLTN 242
                ++ F  + T +   LPP             +   I+ IM +SG+TG PKGV L +
Sbjct: 158 -----YQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPH 212
Query: 243 Q-AIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGF-WRGD 300
           + A V    + D +F   G     +    S +P  H +        +  G  +   +R +
Sbjct: 213 RTACVRFSHARDPIF---GNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFE 269
Query: 301 VRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGM 360
               +  +Q+ K                     I S   L   LF F             
Sbjct: 270 EELFLRSLQDYK---------------------IQSA-LLVPTLFSFF------------ 295
Query: 361 PQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAP-LTQGYGLTE 419
                + L+D    S + E        + SG APL   V E +      P + QGYGLTE
Sbjct: 296 ---AKSTLIDKYDLSNLHE--------IASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTE 344
Query: 420 SCSGCFTSLADVFNMIGTVGVPMTTVEAR---LESVPEMGYDALSSVPRGEICLRGNTLF 476
           + S    +  +  +  G VG  +   EA+   L++   +G +      RGE+C+RG  + 
Sbjct: 345 TTSAILIT-PEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQ-----RGELCVRGPMIM 398
Query: 477 SGYYKRPDLTEEVI-VDGWFHTGDIGEWQPME 507
           SGY   P+ T  +I  DGW H+GDI  W   E
Sbjct: 399 SGYVNNPEATNALIDKDGWLHSGDIAYWDEDE 430

>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551

Iteration: 1
 Score = 82.0 bits (201), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 103/452 (22%), Positives = 173/452 (38%), Gaps = 90/452 (19%)
Query: 76  VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDT 135
           V +TY E ++ ++R   AM+  G+N   R  +   N  ++ + +       +   P  D 
Sbjct: 49  VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDI 108
Query: 136 LGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELG 195
                +   +N ++ ++ FV +  +  IL+   +  +  K I+  +              
Sbjct: 109 YNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTD----------- 157
Query: 196 VSCFSWEEFLQLGT-LDCELPP------------KKKTNISTIMYTSGTTGEPKGVVLTN 242
                ++ F  + T +   LPP             +   I+ IM +SG+TG PKGV L +
Sbjct: 158 -----YQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPH 212
Query: 243 Q-AIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGF-WRGD 300
           + A V    + D +F   G     +    S +P  H +        +  G  +   +R +
Sbjct: 213 RTACVRFSHARDPIF---GNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFE 269
Query: 301 VRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGM 360
               +  +Q+ K                     I S   L   LF F             
Sbjct: 270 EELFLRSLQDYK---------------------IQSA-LLVPTLFSFF------------ 295
Query: 361 PQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAP-LTQGYGLTE 419
                + L+D    S + E        + SG APL   V E +      P + QGYGLTE
Sbjct: 296 ---AKSTLIDKYDLSNLHE--------IASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTE 344
Query: 420 SCSGCFTSLADVFNMIGTVGVPMTTVEAR---LESVPEMGYDALSSVPRGEICLRGNTLF 476
           + S    +  +  +  G VG  +   EA+   L++   +G +      RGE+C+RG  + 
Sbjct: 345 TTSAILIT-PEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQ-----RGELCVRGPMIM 398
Query: 477 SGYYKRPDLTEEVI-VDGWFHTGDIGEWQPME 507
           SGY   P+ T  +I  DGW H+GDI  W   E
Sbjct: 399 SGYVNNPEATNALIDKDGWLHSGDIAYWDEDE 430

>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536

Iteration: 1
 Score = 78.2 bits (191), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 109/436 (25%), Positives = 171/436 (39%), Gaps = 88/436 (20%)
Query: 79  TYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQA--ITYVPLYDTL 136
           TY +V   A R  S +   G+  GD   ++  + PE+++A    + +   IT    + T 
Sbjct: 51  TYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTP 110
Query: 137 GANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGV 196
              A      HA+ S A +           + + C Y K +  FA  S  +    +    
Sbjct: 111 AELA-----KHAKASRAKL----------LITQACYYEK-VKDFARESDVKVMCVDSAPD 154
Query: 197 SCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMF 256
            C  + E  Q    +         ++  + Y+SGTTG PKGV+LT++ ++    SV Q  
Sbjct: 155 GCLHFSELTQADENEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLIT---SVAQQ- 210
Query: 257 VVTGK----VCSEEDTYFSFLPLAHIYDQIIETHC-IHKGCSIGFW-RGDVRYLMEDIQE 310
            V G         ED     LP+ HIY       C +  G  I    + ++  L+  I++
Sbjct: 211 -VDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEK 269
Query: 311 LKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLD 370
            K ++   VP V   I                                       +P LD
Sbjct: 270 YKVSIAPVVPPVMMSI-------------------------------------AKSPDLD 292
Query: 371 SLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVT-SGAPLTQGYGLTES---CSGCFT 426
               S +R         + SG APL   +E+ +R     A L QGYG+TE+    + C  
Sbjct: 293 KHDLSSLR--------MIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLA 344
Query: 427 SLADVFNMI-GTVGVPMTTVEARLESVPEMGYDALSSVPR---GEICLRGNTLFSGYYKR 482
              + F++  G  G  +   E ++   PE G    +S+PR   GEIC+RG+ +  GY   
Sbjct: 345 FAKEPFDIKPGACGTVVRNAEMKIVD-PETG----ASLPRNQPGEICIRGDQIMKGYLND 399
Query: 483 PDLTEEVI-VDGWFHT 497
           P+ T   I  +GW HT
Sbjct: 400 PEATSRTIDKEGWLHT 415

>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979

Iteration: 1
 Score = 76.6 bits (187), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 109/440 (24%), Positives = 171/440 (38%), Gaps = 88/440 (20%)
Query: 79  TYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGA 138
           TY +V+  + +  +     GVN  D   +   NCPE++++  A + +  T         A
Sbjct: 90  TYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGAT---------A 140
Query: 139 NAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFAN-----VSSSQKKEAEE 193
            A       AE++      N    I         Y+  I    N     +      E+  
Sbjct: 141 TAANPFFTPAEIAKQAKASNTKLIITEAR-----YVDKIKPLQNDDGVVIVCIDDNESVP 195
Query: 194 LGVSCFSWEEFLQLGTLDCELPPKKKT---NISTIMYTSGTTGEPKGVVLTNQAIVAEVL 250
           +   C  + E  Q  T   E+    +    ++  + Y+SGTTG PKGV+LT++ +V    
Sbjct: 196 IPEGCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVT--- 252
Query: 251 SVDQMFVVTGK----VCSEEDTYFSFLPLAHIYDQIIETHC-IHKGCSIGFW-RGDVRYL 304
           SV Q   V G+        +D     LP+ HIY       C +  G +I    + ++  L
Sbjct: 253 SVAQQ--VDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLL 310
Query: 305 MEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNK 364
           +E IQ  K T+   VP                                            
Sbjct: 311 LELIQRCKVTVAPMVP-------------------------------------------- 326
Query: 365 AAPLLDSLVFSKIREAFG-GRLQAMLSGAAPLPIHVEEFLRVT-SGAPLTQGYGLTESCS 422
             P++ ++  S   E +    ++ + SGAAPL   +E+ +      A L QGYG+TE+  
Sbjct: 327 --PIVLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGP 384
Query: 423 GCFTSLA---DVFNM-IGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSG 478
               SL    + F +  G  G  +   E ++   P+ G D+LS    GEIC+RG+ +  G
Sbjct: 385 VLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVD-PDTG-DSLSRNQPGEICIRGHQIMKG 442
Query: 479 YYKRPDLTEEVI-VDGWFHT 497
           Y   P  T E I  DGW HT
Sbjct: 443 YLNNPAATAETIDKDGWLHT 462

>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 98/438 (22%), Positives = 163/438 (37%), Gaps = 91/438 (20%)
Query: 76  VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDT 135
           V +TY ++   A R    + + G+  GDR  +   N  E+              VP+   
Sbjct: 28  VRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTR 87
Query: 136 LGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKK----EA 191
           L A  V FI++ +   +        P ++  +        T+  +    S  ++     A
Sbjct: 88  LAAPEVSFILSDSGSKVVIYGAPSAP-VIDAIRAQADPPGTVTDWIGADSLAERLRSAAA 146
Query: 192 EELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLS 251
           +E  V C   +                      IMYTSGTTG PKGVV T++++ +   S
Sbjct: 147 DEPAVECGGDDNLF-------------------IMYTSGTTGHPKGVVHTHESVHSAASS 187
Query: 252 VDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQEL 311
                 V  +     D     LP+ H+           +G ++                +
Sbjct: 188 WASTIDVRYR-----DRLLLPLPMFHVAALTTVIFSAMRGVTL----------------I 226
Query: 312 KPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDS 371
               F    +V+  I   +  ++  GGA+   L          N  + +P+      LD+
Sbjct: 227 SMPQFDAT-KVWSLI---VEERVCIGGAVPAIL----------NFMRQVPEFAE---LDA 269
Query: 372 LVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPL--TQGYGLTESCSGCFTSLA 429
             F           +  ++G AP+P   E  +++ +   +   QGY LTESC G    L+
Sbjct: 270 PDF-----------RYFITGGAPMP---EALIKIYAAKNIEVVQGYALTESCGGGTLLLS 315
Query: 430 -DVFNMIGTVG--VPMTTVEARLES--VPEMGYDALSSVPRGEICLRGNTLFSGYYKRPD 484
            D     G+ G     T V  R +   + E G         GE+ ++ + L   Y+ RP+
Sbjct: 316 EDALRKAGSAGRATMFTDVAVRGDDGVIREHG--------EGEVVIKSDILLKEYWNRPE 367
Query: 485 LTEEVIVDGWFHTGDIGE 502
            T +   +GWF TGDIGE
Sbjct: 368 ATRDAFDNGWFRTGDIGE 385

>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 98/438 (22%), Positives = 163/438 (37%), Gaps = 91/438 (20%)
Query: 76  VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDT 135
           V +TY ++   A R    + + G+  GDR  +   N  E+              VP+   
Sbjct: 42  VRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTR 101
Query: 136 LGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKK----EA 191
           L A  V FI++ +   +        P ++  +        T+  +    S  ++     A
Sbjct: 102 LAAPEVSFILSDSGSKVVIYGAPSAP-VIDAIRAQADPPGTVTDWIGADSLAERLRSAAA 160
Query: 192 EELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLS 251
           +E  V C   +                      IMYTSGTTG PKGVV T++++ +   S
Sbjct: 161 DEPAVECGGDDNLF-------------------IMYTSGTTGHPKGVVHTHESVHSAASS 201
Query: 252 VDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQEL 311
                 V  +     D     LP+ H+           +G ++                +
Sbjct: 202 WASTIDVRYR-----DRLLLPLPMFHVAALTTVIFSAMRGVTL----------------I 240
Query: 312 KPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDS 371
               F    +V+  I   +  ++  GGA+   L          N  + +P+      LD+
Sbjct: 241 SMPQFDAT-KVWSLI---VEERVCIGGAVPAIL----------NFMRQVPEFAE---LDA 283
Query: 372 LVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPL--TQGYGLTESCSGCFTSLA 429
             F           +  ++G AP+P   E  +++ +   +   QGY LTESC G    L+
Sbjct: 284 PDF-----------RYFITGGAPMP---EALIKIYAAKNIEVVQGYALTESCGGGTLLLS 329
Query: 430 -DVFNMIGTVG--VPMTTVEARLES--VPEMGYDALSSVPRGEICLRGNTLFSGYYKRPD 484
            D     G+ G     T V  R +   + E G         GE+ ++ + L   Y+ RP+
Sbjct: 330 EDALRKAGSAGRATMFTDVAVRGDDGVIREHG--------EGEVVIKSDILLKEYWNRPE 381
Query: 485 LTEEVIVDGWFHTGDIGE 502
            T +   +GWF TGDIGE
Sbjct: 382 ATRDAFDNGWFRTGDIGE 399

>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 90/431 (20%), Positives = 165/431 (38%), Gaps = 80/431 (18%)
Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           ++Y E+   A R  + + +RG+  GDR         E ++   A       Y+PL     
Sbjct: 29  ISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLNTAYT 88
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
            + +++ I  AE           P I+ C P     +  I +    +           ++
Sbjct: 89  LHELDYFITDAE-----------PKIVVCDPSKRDGIAAIAAKVGATVETLGPDGRGSLT 137
Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV 257
             +        T+D     +   +++ I+YTSGTTG  KG  L++  + +  L++   + 
Sbjct: 138 DAAAGASEAFATID-----RGADDLAAILYTSGTTGRSKGAXLSHDNLASNSLTLVDYWR 192
Query: 258 VTGKVCSEEDTYFSFLPLAHIYDQIIETHC--IHKGCSIGFWRGDVRYLMEDIQELKPTM 315
            T      +D     LP+ H +   + ++     +G  I   + D   +++     + T+
Sbjct: 193 FT-----PDDVLIHALPIYHTHGLFVASNVTLFARGSXIFLPKFDPDKILD--LXARATV 245
Query: 316 FSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFS 375
             GVP  Y R+                                             L   
Sbjct: 246 LXGVPTFYTRL---------------------------------------------LQSP 260
Query: 376 KIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMI 435
           ++ +   G  +  +SG+APL           +G  + + YG TE+     ++  D   + 
Sbjct: 261 RLTKETTGHXRLFISGSAPLLADTHREWSAKTGHAVLERYGXTETNXNT-SNPYDGDRVP 319
Query: 436 GTVGVPMTTVEARLESVPEMGYDALSSVPRGEIC---LRGNTLFSGYYKRPDLTE-EVIV 491
           G VG  +  V AR+   PE G      +PRG+I    ++G  +F GY++ P+ T+ E   
Sbjct: 320 GAVGPALPGVSARVTD-PETG----KELPRGDIGXIEVKGPNVFKGYWRXPEKTKSEFRD 374
Query: 492 DGWFHTGDIGE 502
           DG+F TGD+G+
Sbjct: 375 DGFFITGDLGK 385

>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548

Iteration: 1
 Score = 73.2 bits (178), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 100/445 (22%), Positives = 173/445 (38%), Gaps = 82/445 (18%)
Query: 76  VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDT 135
           V  +Y E  + +   G A+++ G+    R  +   NC E+ I + A     +   P  + 
Sbjct: 51  VDYSYAEYLEKSXXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEI 110
Query: 136 LGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELG 195
                +   +  ++ +I F  +  +  +++ + +    +KTIV   +       + +  G
Sbjct: 111 YTLRELVHSLGISKPTIVFSSKKGLDKVIT-VQKTVTTIKTIVILDS-------KVDYRG 162
Query: 196 VSCFSWEEFLQLGTLDCELPP------------KKKTNISTIMYTSGTTGEPKGVVLTNQ 243
             C   + F++  T     PP             +K  ++ IM +SG+TG PKGV LT++
Sbjct: 163 YQCL--DTFIKRNT-----PPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHE 215
Query: 244 AIVAEVLSV-DQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW-RGDV 301
            IV       D ++   G   S      + +P  H +        +  G  +    + D 
Sbjct: 216 NIVTRFSHARDPIY---GNQVSPGTAVLTVVPFHHGFGMFTTLGYLICGFRVVMLTKFDE 272
Query: 302 RYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMP 361
              ++ +Q+ K T    VP ++      I NK            E    Y L N      
Sbjct: 273 ETFLKTLQDYKCTSVILVPTLF-----AILNK-----------SELLNKYDLSN------ 310
Query: 362 QNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAP-LTQGYGLTES 420
                                  L  + SG APL   V E +      P + QGYGLTE+
Sbjct: 311 -----------------------LVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTET 347
Query: 421 CSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYY 480
            S    +  +  +  G  G  +   +A++  +      +L    RGE+C++G  L  GY 
Sbjct: 348 TSAIIIT-PEGDDKPGASGKVVPLFKAKVIDLDTK--KSLGPNRRGEVCVKGPMLMKGYV 404
Query: 481 KRPDLTEEVI-VDGWFHTGDIGEWQ 504
             P+ T+E+I  +GW HTGDIG + 
Sbjct: 405 NNPEATKELIDEEGWLHTGDIGYYD 429

>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score = 72.8 bits (177), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 100/445 (22%), Positives = 173/445 (38%), Gaps = 82/445 (18%)
Query: 76  VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDT 135
           V  +Y E  + +   G A+++ G+    R  +   NC E+ I + A     +   P  + 
Sbjct: 51  VDYSYAEYLEKSCXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEI 110
Query: 136 LGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELG 195
                +   +  ++ +I F  +  +  +++ + +    +KTIV   +       + +  G
Sbjct: 111 YTLRELVHSLGISKPTIVFSSKKGLDKVIT-VQKTVTTIKTIVILDS-------KVDYRG 162
Query: 196 VSCFSWEEFLQLGTLDCELPP------------KKKTNISTIMYTSGTTGEPKGVVLTNQ 243
             C   + F++  T     PP             +K  ++ IM +SG+TG PKGV LT++
Sbjct: 163 YQCL--DTFIKRNT-----PPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHE 215
Query: 244 AIVAEVLSV-DQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW-RGDV 301
            IV       D ++   G   S      + +P  H +        +  G  +    + D 
Sbjct: 216 NIVTRFSHARDPIY---GNQVSPGTAVLTVVPFHHGFGMFTTLGYLICGFRVVMLTKFDE 272
Query: 302 RYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMP 361
              ++ +Q+ K T    VP ++      I NK            E    Y L N      
Sbjct: 273 ETFLKTLQDYKCTSVILVPTLF-----AILNK-----------SELLNKYDLSN------ 310
Query: 362 QNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAP-LTQGYGLTES 420
                                  L  + SG APL   V E +      P + QGYGLTE+
Sbjct: 311 -----------------------LVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTET 347
Query: 421 CSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYY 480
            S    +  +  +  G  G  +   +A++  +      +L    RGE+C++G  L  GY 
Sbjct: 348 TSAIIIT-PEGDDKPGASGKVVPLFKAKVIDLDTK--KSLGPNRRGEVCVKGPMLMKGYV 404
Query: 481 KRPDLTEEVI-VDGWFHTGDIGEWQ 504
             P+ T+E+I  +GW HTGDIG + 
Sbjct: 405 NNPEATKELIDEEGWLHTGDIGYYD 429

>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score = 72.8 bits (177), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 100/445 (22%), Positives = 173/445 (38%), Gaps = 82/445 (18%)
Query: 76  VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDT 135
           V  +Y E  + +   G A+++ G+    R  +   NC E+ I + A     +   P  + 
Sbjct: 51  VDYSYAEYLEKSCXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEI 110
Query: 136 LGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELG 195
                +   +  ++ +I F  +  +  +++ + +    +KTIV   +       + +  G
Sbjct: 111 YTLRELVHSLGISKPTIVFSSKKGLDKVIT-VQKTVTTIKTIVILDS-------KVDYRG 162
Query: 196 VSCFSWEEFLQLGTLDCELPP------------KKKTNISTIMYTSGTTGEPKGVVLTNQ 243
             C   + F++  T     PP             +K  ++ IM +SG+TG PKGV LT++
Sbjct: 163 YQCL--DTFIKRNT-----PPGYQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHE 215
Query: 244 AIVAEVLSV-DQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFW-RGDV 301
            IV       D ++   G   S      + +P  H +        +  G  +    + D 
Sbjct: 216 NIVTRFSHARDPIY---GNQVSPGTAVLTVVPFHHGFGMFTTLGYLICGFRVVMLTKFDE 272
Query: 302 RYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMP 361
              ++ +Q+ K T    VP ++      I NK            E    Y L N      
Sbjct: 273 ETFLKTLQDYKCTNVILVPTLF-----AILNK-----------SELLNKYDLSN------ 310
Query: 362 QNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAP-LTQGYGLTES 420
                                  L  + SG APL   V E +      P + QGYGLTE+
Sbjct: 311 -----------------------LVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTET 347
Query: 421 CSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYY 480
            S    +  +  +  G  G  +   +A++  +      +L    RGE+C++G  L  GY 
Sbjct: 348 TSAIIIT-PEGDDKPGASGKVVPLFKAKVIDLDTK--KSLGPNRRGEVCVKGPMLMKGYV 404
Query: 481 KRPDLTEEVI-VDGWFHTGDIGEWQ 504
             P+ T+E+I  +GW HTGDIG + 
Sbjct: 405 NNPEATKELIDEEGWLHTGDIGYYD 429

>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 96/439 (21%), Positives = 168/439 (38%), Gaps = 71/439 (16%)
Query: 76  VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDT 135
           V +TY E ++ A R    M+  G+       +   N  ++ + +       +   P  D 
Sbjct: 83  VNITYSEYFEMACRLAETMKRYGLGLQHHIAVCSENSLQFFMPVCGALFIGVGVAPTNDI 142
Query: 136 LGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELG 195
                +   ++ ++ +I F  +  +  IL    +  +  K ++    + S +    ++  
Sbjct: 143 YNERELYNSLSISQPTIVFCSKRALQKILGVQKKLPIIQKIVI----LDSREDYMGKQ-- 196
Query: 196 VSCFSW-EEFLQLGTLDCELPPK---KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLS 251
            S +S+ E  L  G  + +  P    ++T  + IM +SG+TG PKGV LT++ I      
Sbjct: 197 -SMYSFIESHLPAGFNEYDYIPDSFDRETATALIMNSSGSTGLPKGVELTHKNICVRFSH 255
Query: 252 V-DQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGF-WRGDVRYLMEDIQ 309
             D +F   G     +    + +P  H +        +  G  I   +R +    +  +Q
Sbjct: 256 CRDPVF---GNQIIPDTAILTVIPFHHGFGMFTTLGYLTCGFRIVLMYRFEEELFLRSLQ 312
Query: 310 ELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLL 369
           + K                     I S   L   LF F                  + L+
Sbjct: 313 DYK---------------------IQSA-LLVPTLFSFF---------------AKSTLV 335
Query: 370 DSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAP-LTQGYGLTESCSGCFTSL 428
           D    S + E        + SG APL   V E +      P + QGYGLTE+ S    + 
Sbjct: 336 DKYDLSNLHE--------IASGGAPLAKEVGEAVAKRFKLPGIRQGYGLTETTSAIIITP 387
Query: 429 ADVFNMIGTVG--VPMTTVE-ARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDL 485
               +  G  G  VP  + +   L++   +G +      RGE+C++G  +  GY   P+ 
Sbjct: 388 RGRDDKPGACGKVVPFFSAKIVDLDTGKTLGVNQ-----RGELCVKGPMIMKGYVNNPEA 442
Query: 486 TEEVI-VDGWFHTGDIGEW 503
           T  +I  DGW H+GDI  +
Sbjct: 443 TSALIDKDGWLHSGDIAYY 461

>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score = 65.9 bits (159), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 94/435 (21%), Positives = 167/435 (38%), Gaps = 90/435 (20%)
Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           ++Y E+   A R  + + +RG+  GDR         E ++   A       Y+PL     
Sbjct: 29  ISYAELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVYLPLNTAYT 88
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
            + +++ I  AE           P I+ C P     +  I +    +           ++
Sbjct: 89  LHELDYFITDAE-----------PXIVVCDPSXRDGIAAIAAXVGATVETLGPDGRGSLT 137
Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV 257
             +        T+D     +   +++ I+YTSGTTG   G +L++  + +  L++   + 
Sbjct: 138 DAAAGASEAFATID-----RGADDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWR 192
Query: 258 VTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIG-FWRGDVRYLM----EDIQEL- 311
            T      +D     LP+ H       TH +    ++  F RG + +L     + I +L 
Sbjct: 193 FT-----PDDVLIHALPIYH-------THGLFVASNVTLFARGSMIFLPXFDPDXILDLM 240
Query: 312 -KPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLD 370
            + T+  GVP  Y R+                                            
Sbjct: 241 ARATVLMGVPTFYTRL-------------------------------------------- 256
Query: 371 SLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLAD 430
            L   ++     G ++  +SG+APL           +G  + + YG+TE+     ++  D
Sbjct: 257 -LQSPRLTXETTGHMRLFISGSAPLLADTHREWSAXTGHAVLERYGMTETNMNT-SNPYD 314
Query: 431 VFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICL---RGNTLFSGYYKRPDLT- 486
              + G VG  +  V AR+   PE G +    +PRG+I +    G  +F GY++ P+ T 
Sbjct: 315 GDRVPGAVGPALPGVSARVTD-PETGXE----LPRGDIGMIEVXGPNVFXGYWRMPEXTX 369
Query: 487 EEVIVDGWFHTGDIG 501
            E   DG+F TGD+G
Sbjct: 370 SEFRDDGFFITGDLG 384

>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503

Iteration: 1
 Score = 65.9 bits (159), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 94/435 (21%), Positives = 167/435 (38%), Gaps = 90/435 (20%)
Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           ++Y E+   A R  + + +RG+  GDR         E ++   A       Y+PL     
Sbjct: 29  ISYAELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVYLPLNTAYT 88
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
            + +++ I  AE           P I+ C P     +  I +    +           ++
Sbjct: 89  LHELDYFITDAE-----------PXIVVCDPSXRDGIAAIAAXVGATVETLGPDGRGSLT 137
Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV 257
             +        T+D     +   +++ I+YTSGTTG   G +L++  + +  L++   + 
Sbjct: 138 DAAAGASEAFATID-----RGADDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWR 192
Query: 258 VTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIG-FWRGDVRYLM----EDIQEL- 311
            T      +D     LP+ H       TH +    ++  F RG + +L     + I +L 
Sbjct: 193 FT-----PDDVLIHALPIYH-------THGLFVASNVTLFARGSMIFLPXFDPDXILDLM 240
Query: 312 -KPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLD 370
            + T+  GVP  Y R+                                            
Sbjct: 241 ARATVLMGVPTFYTRL-------------------------------------------- 256
Query: 371 SLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLAD 430
            L   ++     G ++  +SG+APL           +G  + + YG+TE+     ++  D
Sbjct: 257 -LQSPRLTXETTGHMRLFISGSAPLLADTHREWSAXTGHAVLERYGMTETNMNT-SNPYD 314
Query: 431 VFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICL---RGNTLFSGYYKRPDLT- 486
              + G VG  +  V AR+   PE G +    +PRG+I +    G  +F GY++ P+ T 
Sbjct: 315 GDRVPGAVGPALPGVSARVTD-PETGXE----LPRGDIGMIEVXGPNVFXGYWRMPEXTX 369
Query: 487 EEVIVDGWFHTGDIG 501
            E   DG+F TGD+G
Sbjct: 370 SEFRDDGFFITGDLG 384

>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506

Iteration: 1
 Score = 65.5 bits (158), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 94/435 (21%), Positives = 167/435 (38%), Gaps = 90/435 (20%)
Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           ++Y E+   A R  + + +RG+  GDR         E ++   A       Y+PL     
Sbjct: 29  ISYAELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVYLPLNTAYT 88
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
            + +++ I  AE           P I+ C P     +  I +    +           ++
Sbjct: 89  LHELDYFITDAE-----------PXIVVCDPSXRDGIAAIAAXVGATVETLGPDGRGSLT 137
Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV 257
             +        T+D     +   +++ I+YTSGTTG   G +L++  + +  L++   + 
Sbjct: 138 DAAAGASEAFATID-----RGADDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWR 192
Query: 258 VTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIG-FWRGDVRYLM----EDIQEL- 311
            T      +D     LP+ H       TH +    ++  F RG + +L     + I +L 
Sbjct: 193 FT-----PDDVLIHALPIYH-------THGLFVASNVTLFARGSMIFLPXFDPDXILDLM 240
Query: 312 -KPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLD 370
            + T+  GVP  Y R+                                            
Sbjct: 241 ARATVLMGVPTFYTRL-------------------------------------------- 256
Query: 371 SLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLAD 430
            L   ++     G ++  +SG+APL           +G  + + YG+TE+     ++  D
Sbjct: 257 -LQSPRLTXETTGHMRLFISGSAPLLADTHREWSAXTGHAVLERYGMTETNMNT-SNPYD 314
Query: 431 VFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICL---RGNTLFSGYYKRPDLT- 486
              + G VG  +  V AR+   PE G +    +PRG+I +    G  +F GY++ P+ T 
Sbjct: 315 GDRVPGAVGPALPGVSARVTD-PETGXE----LPRGDIGMIEVXGPNVFXGYWRMPEXTX 369
Query: 487 EEVIVDGWFHTGDIG 501
            E   DG+F TGD+G
Sbjct: 370 SEFRDDGFFITGDLG 384

>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509

Iteration: 1
 Score = 62.8 bits (151), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 94/438 (21%), Positives = 157/438 (35%), Gaps = 90/438 (20%)
Query: 76  VWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDT 135
           V LT+++    A R  S +   GV+ GDR  I   NC E I  + A        +P+   
Sbjct: 30  VRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAILLPVNYR 89
Query: 136 LGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELG 195
           L A+ + F++     S+     +    +   LP               S    K+A  +G
Sbjct: 90  LNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLP---------------SLGGVKKAYAIG 134
Query: 196 VSCFSWEEFLQLGT-LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQ 254
                +  F  L +      P     +   I++T+   G P+G +++   ++     + Q
Sbjct: 135 DGSGPFAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLL-----IAQ 189
Query: 255 MFVVTGKVCSEEDTYFSFLPLAHIYD-QIIETHCIHKGCSIGFWRGDVRYLMEDIQELKP 313
             +V     +E D     LPL H+    ++ T     G S+   + D      DI+  K 
Sbjct: 190 SSLVDAWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAAKFDPAQAARDIEAHKV 249
Query: 314 TMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLV 373
           T+ +                            EFA    LGN+      ++AAP      
Sbjct: 250 TVMA----------------------------EFA--PMLGNI-----LDQAAPAQ---- 270
Query: 374 FSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFN 433
            + +R   G             P  +E F      A     +G +E+     ++ A   +
Sbjct: 271 LASLRAVTG----------LDTPETIERFEATCPNATFWATFGQSETSG--LSTFAPYRD 318
Query: 434 MIGTVGVPM-----TTVEARLESVP--EMGYDALSSVPRGEICLRGNTLFSGYYKRPDLT 486
              + G P+       V+A    +P  E+G          EI LRG T+F GY+     T
Sbjct: 319 RPKSAGRPLFWRTVAVVDAEDRPLPPGEVG----------EIVLRGPTVFKGYWNNAAAT 368
Query: 487 EEVIVDGWFHTGDIGEWQ 504
           +    +GW HTGD+G + 
Sbjct: 369 QHAFRNGWHHTGDMGRFD 386

>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase (Fadd1) From Archaeoglobus Fulgidus Length = 549

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 100/441 (22%), Positives = 173/441 (39%), Gaps = 88/441 (19%)
Query: 79  TYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGA 138
            + E+ +   +  S +  +GV  G+  G+   N  +++  + A    A T VP+     +
Sbjct: 54  NFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVXTIYALWRVAATPVPINPXYKS 113
Query: 139 NAVEFIINHAEVSIAFVQ----ENKIPSILSC-LPRCCLYLKTIVSFANVSSSQKKEAEE 193
             +E I+N +E +   V     EN  P +    + R  +    + S + V  S  ++ E 
Sbjct: 114 FELEHILNDSEATTLVVHSXLYENFKPVLEKTGVERVFVVGGEVNSLSEVXDSGSEDFEN 173
Query: 194 LGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVD 253
           + V+                     + +++ I YT GTTG PKGV LT+  + A  L   
Sbjct: 174 VKVN--------------------PEEDVALIPYTGGTTGXPKGVXLTHFNLAANAL--- 210
Query: 254 QMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCS-IGFWRGDVRYLMEDIQELK 312
           Q+ V TG   S  DT     P  H  +  +    +  G   +     +   L E+I++ K
Sbjct: 211 QLAVATG--LSHXDTIVGCXPXFHSAEFGLVNLXVTVGNEYVVXGXFNQEXLAENIEKYK 268
Query: 313 PTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSL 372
            T    VP   + +   + +        S K ++++Y                       
Sbjct: 269 GTFSWAVPPALNVLVNTLES--------SNKTYDWSY----------------------- 297
Query: 373 VFSKIREAFGGRLQAMLSGAAPL-PIHVEEFLRVTSGA------PLTQGYGLTESCSGCF 425
                       L+   +GA P+ P  VE+ L++ +           Q +G TE+C    
Sbjct: 298 ------------LKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGXTEACPXVT 345
Query: 426 TSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDL 485
           T+     +   T GVP + +E ++ S+ E G + L     GEI +RG  +F GY+KR   
Sbjct: 346 TNPPLRLDKSTTQGVPXSDIELKVISL-EDGRE-LGVGESGEIVIRGPNIFKGYWKREKE 403
Query: 486 TEEVIV-----DGWFHTGDIG 501
            +E          +F TGD+G
Sbjct: 404 NQECWWYDEKGRKFFRTGDVG 424

>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase From Staphylococcus Aureus Subsp. Aureus Mu50 Length = 501

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 64/284 (22%), Positives = 122/284 (42%), Gaps = 65/284 (22%)
Query: 221 NISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDT-YFSFLPLAHIY 279
           +I++IM+TSGTTG  K V  T +   A  +   +       +  + DT + S LP+ HI 
Sbjct: 164 DIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKE------SLGFDRDTNWLSVLPIYHIS 217
Query: 280 DQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGA 339
              +    + +G ++                          R+ D+              
Sbjct: 218 GLSVLLRAVIEGFTV--------------------------RIVDKFN------------ 239
Query: 340 LSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHV 399
            ++++     N ++ ++   +PQ      L+ L+   + E +   LQ +L G A L   +
Sbjct: 240 -AEQILTMIKNERITHISL-VPQT-----LNWLMQQGLHEPYN--LQKILLGGAKLSATM 290
Query: 400 EEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMI-GTVGVPMTTVEARLESVPEMGYD 458
            E   +    P+   +G+TE+CS   T+  ++ +    TVG+P   V+ ++++  + G+ 
Sbjct: 291 IE-TALQYNLPIYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPNKEGH- 348
Query: 459 ALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGE 502
                  GE+ ++G  + +GY    DLT     +G+F+TGDI E
Sbjct: 349 -------GELMIKGANVMNGYLYPTDLT-GTFENGYFNTGDIAE 384

>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate Ligases From E. Coli And L. Pneumophila Length = 583

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 80/203 (39%), Gaps = 26/203 (12%)
Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           L YQ +   A      + S  +  GDR  +      E++ A  AC    +  VPL    G
Sbjct: 49  LEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEFVEAFFACQYAGLVAVPLAIPXG 108
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSIL-SCLPRCCLYLKTIVSFANVSSSQKKEAEELGV 196
               +                K+  +L SC P   +     +   N ++    +  EL V
Sbjct: 109 VGQRD------------SWSAKLQGLLASCQPAAIITGDEWLPLVNAAT---HDNPELHV 153
Query: 197 SCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEV--LSVDQ 254
              +W  F  L   D  L      +I+ + YTSG+T  P+GV++T++ + A +  +S D 
Sbjct: 154 LSHAW--FKALPEADVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVXANLRAISHDG 211
Query: 255 MFVVTGKVCSEEDTYFSFLPLAH 277
           + +  G  C       S+LP  H
Sbjct: 212 IKLRPGDRC------VSWLPFYH 228

>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From Burkholderia Xenovorans Lb400 Length = 529

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 116/299 (38%), Gaps = 42/299 (14%)
Query: 40  AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGV 99
           A +E+P   F  +A     N+   G+       G     TY E+ + A RF SA+R+ GV
Sbjct: 14  ATVEAPPALFNFAAYLFRLNETRAGKTAYIDDTGS---TTYGELEERARRFASALRTLGV 70
Query: 100 NPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEV-----SIAF 154
           +P +R  +   +     +A        +  V     L      +++ H+       S A 
Sbjct: 71  HPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGAL 130
Query: 155 VQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCEL 214
           VQ N   ++ S     C   + IVS       Q +E+E      F  EE +       + 
Sbjct: 131 VQ-NVTQALESAEHDGC---QLIVS-------QPRESEPRLAPLF--EELIDAAAPAAKA 177
Query: 215 PPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLP 274
                 +I+  +Y+SG+TG+PKG V T+    A +    +++       +E D  FS   
Sbjct: 178 AATGCDDIAFWLYSSGSTGKPKGTVHTH----ANLYWTAELYAKPILGIAENDVVFSAAK 233
Query: 275 LAHIYDQIIETHCIHKGCSIGFWRGDVRYLMED----------IQELKPTMFSGVPRVY 323
           L   Y        +  G +     G    LM +          + E +PT+F GVP +Y
Sbjct: 234 LFFAYG-------LGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLY 285

>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 67/300 (22%), Positives = 108/300 (36%), Gaps = 59/300 (19%)
Query: 212 CELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFS 271
            E P ++    + I YTSGTTG PK  ++  +A  + VL    M    G      +    
Sbjct: 145 IEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLF---MSTQVGLRHGRHNVVLG 201
Query: 272 FLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMED-----IQELKPTMFSGVPRVYDRI 326
            +PL H+               +GF+   V  L  D     ++E +P          D +
Sbjct: 202 LMPLYHV---------------VGFFAVLVAALALDGTYVVVEEFRPV---------DAL 237
Query: 327 YTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQ 386
                 +++S          FA    L  +        ++  LDSL        F G   
Sbjct: 238 QLVQQEQVTS---------LFATPTHLDALAAAAAHAGSSLKLDSLRHV----TFAG--- 281
Query: 387 AMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVE 446
                 A +P  V E +          GYG TE+ +  +          GT   P    E
Sbjct: 282 ------ATMPDAVLETVHQHLPGEKVNGYGTTEAMNSLYMRQPKT----GTEMAPGFFSE 331
Query: 447 ARLESVPEMGYDALSSVPRGEICLRG-NTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQP 505
            R+  +     + +++   GE+ +   ++ F GY  +P  T E + DGW+ T D+  W P
Sbjct: 332 VRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTP 391

>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609 Length = 652

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 73/176 (41%), Gaps = 18/176 (10%)
Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           ++Y+E++    RF + +   G+  GD   IY    PE  +AM AC      +  ++    
Sbjct: 108 ISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFS 167
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFA----NVSSSQKKEAEE 193
             AV   I  +   +    +  + +  S      + LK  V  A    NV+S +     +
Sbjct: 168 PEAVAGCIIDSSSRLVITADEGVRAGRS------IPLKKNVDDALKNPNVTSVEHVIVLK 221
Query: 194 LGVSCFSWEEFLQLGTLDC--ELPPKKKTNIST------IMYTSGTTGEPKGVVLT 241
              S   W+E   L   D   +  P+ +           I+YTSG+TG+PKGV+ T
Sbjct: 222 RTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHT 277

>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation Length = 652

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 73/176 (41%), Gaps = 18/176 (10%)
Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           ++Y+E++    RF + +   G+  GD   IY    PE  +AM AC      +  ++    
Sbjct: 108 ISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFS 167
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFA----NVSSSQKKEAEE 193
             AV   I  +   +    +  + +  S      + LK  V  A    NV+S +     +
Sbjct: 168 PEAVAGRIIDSSSRLVITADEGVRAGAS------IPLKKNVDDALKNPNVTSVEHVIVLK 221
Query: 194 LGVSCFSWEEFLQLGTLDC--ELPPKKKTNIST------IMYTSGTTGEPKGVVLT 241
              S   W+E   L   D   +  P+ +           I+YTSG+TG+PKGV+ T
Sbjct: 222 RTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHT 277

>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation Length = 652

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 73/176 (41%), Gaps = 18/176 (10%)
Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           ++Y+E++    RF + +   G+  GD   IY    PE  +AM AC      +  ++    
Sbjct: 108 ISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFS 167
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFA----NVSSSQKKEAEE 193
             AV   I  +   +    +  + +  S      + LK  V  A    NV+S +     +
Sbjct: 168 PEAVAGRIIDSSSRLVITADEGVRAGRS------IPLKKNVDDALKNPNVTSVEHVIVLK 221
Query: 194 LGVSCFSWEEFLQLGTLDC--ELPPKKKTNIST------IMYTSGTTGEPKGVVLT 241
              S   W+E   L   D   +  P+ +           I+YTSG+TG+PKGV+ T
Sbjct: 222 RTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHT 277

>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A Nonribosomal Peptide Synthetase Termination Module Length = 1304

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 78/202 (38%), Gaps = 47/202 (23%)
Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           L+Y+E+ + A R    ++  G   G    +Y     E +I +         Y+P+   L 
Sbjct: 490 LSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAYLPVDPKLP 549
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEEL--- 194
                              E++I  +L+     CL               K++A EL   
Sbjct: 550 -------------------EDRISYMLADSAAACLL---------THQEMKEQAAELPYT 581
Query: 195 GVSCF-----SWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEV 249
           G + F      +EE  Q       + P    + + IMYTSGTTG+PKG + T+  I   V
Sbjct: 582 GTTLFIDDQTRFEE--QASDPATAIDP---NDPAYIMYTSGTTGKPKGNITTHANIQGLV 636
Query: 250 LSVDQMFVVTGKVCSEEDTYFS 271
             VD M        S++DT+ S
Sbjct: 637 KHVDYM------AFSDQDTFLS 652

>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation Length = 652

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 73/176 (41%), Gaps = 18/176 (10%)
Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           ++Y+E++    RF + +   G+  GD   IY    PE  +AM AC      +  ++    
Sbjct: 108 ISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFS 167
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFA----NVSSSQKKEAEE 193
             AV   I  +   +    +  + +  S      + LK  V  A    NV+S +     +
Sbjct: 168 PEAVAGRIIDSSSRLVITADEGVRAGRS------IPLKKNVDDALKNPNVTSVEHVIVLK 221
Query: 194 LGVSCFSWEEFLQLGTLDC--ELPPKKKTNIST------IMYTSGTTGEPKGVVLT 241
              S   W+E   L   D   +  P+ +           I+YTSG+TG+PKGV+ T
Sbjct: 222 RTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHT 277

>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And Coa Bound Length = 652

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 73/176 (41%), Gaps = 18/176 (10%)
Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           ++Y+E++    RF + +   G+  GD   IY    PE  +AM AC      +  ++    
Sbjct: 108 ISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFS 167
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFA----NVSSSQKKEAEE 193
             AV   I  +   +    +  + +  S      + LK  V  A    NV+S +     +
Sbjct: 168 PEAVAGRIIDSSSRLVITADEGVRAGRS------IPLKKNVDDALKNPNVTSVEHVIVLK 221
Query: 194 LGVSCFSWEEFLQLGTLDC--ELPPKKKTNIST------IMYTSGTTGEPKGVVLT 241
              S   W+E   L   D   +  P+ +           I+YTSG+TG+PKGV+ T
Sbjct: 222 RTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHT 277

>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation Length = 652

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 73/176 (41%), Gaps = 18/176 (10%)
Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           ++Y+E++    RF + +   G+  GD   IY    PE  +AM AC      +  ++    
Sbjct: 108 ISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFS 167
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFA----NVSSSQKKEAEE 193
             AV   I  +   +    +  + +  S      + LK  V  A    NV+S +     +
Sbjct: 168 PEAVAGRIIDSSSRLVITADEGVRAGRS------IPLKKNVDDALKNPNVTSVEHVIVLK 221
Query: 194 LGVSCFSWEEFLQLGTLDC--ELPPKKKTNIST------IMYTSGTTGEPKGVVLT 241
              S   W+E   L   D   +  P+ +           I+YTSG+TG+PKGV+ T
Sbjct: 222 RTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHT 277

>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation Length = 652

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 73/176 (41%), Gaps = 18/176 (10%)
Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           ++Y+E++    RF + +   G+  GD   IY    PE  +AM AC      +  ++    
Sbjct: 108 ISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFS 167
Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFA----NVSSSQKKEAEE 193
             AV   I  +   +    +  + +  S      + LK  V  A    NV+S +     +
Sbjct: 168 PEAVAGRIIDSSSRLVITADEGVRAGRS------IPLKKNVDDALKNPNVTSVEHVIVLK 221
Query: 194 LGVSCFSWEEFLQLGTLDC--ELPPKKKTNIST------IMYTSGTTGEPKGVVLT 241
              S   W+E   L   D   +  P+ +           I+YTSG+TG+PKGV+ T
Sbjct: 222 RTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHT 277

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	508
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	4e-72
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	4e-69
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	4e-69
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	1e-67
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	3e-67
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	5e-67
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	1e-66
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	2e-65
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	2e-63
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	2e-61
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	4e-61
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	5e-61
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	7e-53
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	1e-50
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	3e-50
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	1e-37
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	5e-33
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	2e-28
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	1e-27
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	5e-26
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	1e-17
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	5e-07
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	3e-11
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	3e-08
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	9e-08
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	2e-07
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	1e-07
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	2e-05
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	2e-07
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	2e-05
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	7e-07
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	9e-07
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	2e-06
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	9e-05
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	2e-05
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	1e-04
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517

 Score =  237 bits (606), Expect = 4e-72
 Identities = 86/428 (20%), Positives = 139/428 (32%), Gaps = 77/428 (17%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           +TY ++   A R    + + G+  GDR  +   N  E+              VP+   L 
Sbjct: 44  MTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLA 103

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
           A  V FI++ +   +        P I +   +      T+  +                 
Sbjct: 104 APEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADP-PGTVTDWIGAD------------- 149

Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV 257
             S  E L+    D         +   IMYTSGTTG PKGVV T++++ +   S      
Sbjct: 150 --SLAERLRSAAADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTID 207

Query: 258 VTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMF 316
           V        D     LP+ H+           +G ++      D   +   I E +  + 
Sbjct: 208 VR-----YRDRLLLPLPMFHVAALTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIG 262

Query: 317 SGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSK 376
             VP + + +                                        P    L    
Sbjct: 263 GAVPAILNFMR-------------------------------------QVPEFAELDAPD 285

Query: 377 IREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSG-CFTSLADVFNMI 435
            R          ++G AP+P  + +         + QGY LTESC G       D     
Sbjct: 286 FR--------YFITGGAPMPEALIKIYAAK-NIEVVQGYALTESCGGGTLLLSEDALRKA 336

Query: 436 GTVGVPMTTVEARLESVPEMGYDALSSVPR--GEICLRGNTLFSGYYKRPDLTEEVIVDG 493
           G+ G      +  +    + G           GE+ ++ + L   Y+ RP+ T +   +G
Sbjct: 337 GSAGRATMFTDVAV--RGDDGVI----REHGEGEVVIKSDILLKEYWNRPEATRDAFDNG 390

Query: 494 WFHTGDIG 501
           WF TGDIG
Sbjct: 391 WFRTGDIG 398

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503

 Score =  229 bits (585), Expect = 4e-69
 Identities = 89/432 (20%), Positives = 162/432 (37%), Gaps = 84/432 (19%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           ++Y E+   A R  + + +RG+  GDR         E ++   A       Y+PL     
Sbjct: 29  ISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLNTAYT 88

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
            + +++ I  AE  I     +K   I +   +    ++T+                    
Sbjct: 89  LHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLGPDGRG-------------- 134

Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV 257
             S  +     +       +   +++ I+YTSGTTG  KG +L++  + +  L++   + 
Sbjct: 135 --SLTDAAAGASEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWR 192

Query: 258 VTGKVCSEEDTYFSFLPLAHIYDQIIETH-CIHKGCSIGFWRG-DVRYLMEDIQELKPTM 315
            T      +D     LP+ H +   + ++  +    S+ F    D   +++ +   + T+
Sbjct: 193 FT-----PDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPKFDPDKILDLMA--RATV 245

Query: 316 FSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFS 375
             GVP  Y R+                                       +P L      
Sbjct: 246 LMGVPTFYTRLL-------------------------------------QSPRLTKETTG 268

Query: 376 KIREAFGGRLQAMLSGAAPLPIHV-EEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNM 434
            +R          +SG+APL      E+   T G  + + YG+TE+             +
Sbjct: 269 HMR--------LFISGSAPLLADTHREWSAKT-GHAVLERYGMTETNMNTSNPYDGD-RV 318

Query: 435 IGTVGVPMTTVEARLESV-PEMGYDALSSVPR---GEICLRGNTLFSGYYKRPDLTEEVI 490
            G VG  +  V AR+    PE G +    +PR   G I ++G  +F GY++ P+ T+   
Sbjct: 319 PGAVGPALPGVSARV--TDPETGKE----LPRGDIGMIEVKGPNVFKGYWRMPEKTKSEF 372

Query: 491 V-DGWFHTGDIG 501
             DG+F TGD+G
Sbjct: 373 RDDGFFITGDLG 384

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509

 Score =  228 bits (585), Expect = 4e-69
 Identities = 80/430 (18%), Positives = 135/430 (31%), Gaps = 84/430 (19%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           LT+++    A R  S +   GV+ GDR  I   NC E I  + A        +P+   L 
Sbjct: 32  LTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAILLPVNYRLN 91

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
           A+ + F++     S+     +    +   LP     +K   +  + S             
Sbjct: 92  ADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGG-VKKAYAIGDGSG------------ 138

Query: 198 CFSWEEFLQL-GTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMF 256
              +  F  L        P     +   I++T+   G P+G +++   ++    S+   +
Sbjct: 139 --PFAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAW 196

Query: 257 VVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTM 315
            +T     E D     LPL H+    +       G +       D      DI+  K T+
Sbjct: 197 RLT-----EADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAAKFDPAQAARDIEAHKVTV 251

Query: 316 FSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFS 375
            +    +   I                                                +
Sbjct: 252 MAEFAPMLGNI---------------------------------------LDQAAPAQLA 272

Query: 376 KIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSG-CFTSLADVFNM 434
            +R        A+     P    +E F      A     +G +E+     F    D    
Sbjct: 273 SLR--------AVTGLDTPET--IERFEATCPNATFWATFGQSETSGLSTFAPYRDR--- 319

Query: 435 IGTVGVPMTTVEARLESVPEMGYDALSSVPR---GEICLRGNTLFSGYYKRPDLTEEVIV 491
             + G P+      +  V          +P    GEI LRG T+F GY+     T+    
Sbjct: 320 PKSAGRPLFWRTVAV--VDAEDRP----LPPGEVGEIVLRGPTVFKGYWNNAAATQHAFR 373

Query: 492 DGWFHTGDIG 501
           +GW HTGD+G
Sbjct: 374 NGWHHTGDMG 383

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549

 Score =  226 bits (578), Expect = 1e-67
 Identities = 89/480 (18%), Positives = 168/480 (35%), Gaps = 101/480 (21%)

Query: 46  WQFFCDSAKRIPNN----QMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNP 101
                 +A++                   +      + + E+ +   +  S +  +GV  
Sbjct: 22  ADRIDAAAEKFGEKTAIISAEPKFPSEFPES-----MNFLEICEVTKKLASGISRKGVRK 76

Query: 102 GDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP 161
           G+  G+   N  ++++ + A    A T VP+     +  +E I+N +E +   V      
Sbjct: 77  GEHVGVCIPNSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYE 136

Query: 162 SILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPP-KKKT 220
           +    L +    ++ +                +G    S  E +  G+ D E      + 
Sbjct: 137 NFKPVLEKTG--VERVFV--------------VGGEVNSLSEVMDSGSEDFENVKVNPEE 180

Query: 221 NISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD 280
           +++ I YT GTTG PKGV+LT+  + A  L +     ++       DT    +P+ H  +
Sbjct: 181 DVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSH-----MDTIVGCMPMFHSAE 235

Query: 281 QIIETHCIHKGCSI----GFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISS 336
             +    +  G        F   +   L E+I++ K T    VP   +            
Sbjct: 236 FGLVNLMVTVGNEYVVMGMF---NQEMLAENIEKYKGTFSWAVPPALN------------ 280

Query: 337 GGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLP 396
              L                      N       +  +S ++           +GA P+ 
Sbjct: 281 --VLV---------------------NTLESSNKTYDWSYLK--------VFATGAWPVA 309

Query: 397 IHVEE-FLRVT------SGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARL 449
             + E  L++             Q +G+TE+C    T+     +   T GVPM+ +E ++
Sbjct: 310 PALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLRLDKSTTQGVPMSDIELKV 369

Query: 450 ESVPEMGYDALSSVPR---GEICLRGNTLFSGYYKRPDLTEEVIV-----DGWFHTGDIG 501
                +  +    +     GEI +RG  +F GY+KR    +E          +F TGD+G
Sbjct: 370 -----ISLEDGRELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVG 424

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501

 Score =  223 bits (572), Expect = 3e-67
 Identities = 77/460 (16%), Positives = 148/460 (32%), Gaps = 86/460 (18%)

Query: 47  QFFCDSAKRIPNNQML--GGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDR 104
            +    A++  ++  +  G               TYQ +Y  A      +         R
Sbjct: 5   FWLYKQAQQNGHHIAITDGQES-----------YTYQNLYCEASLLAKRL---KAYQQSR 50

Query: 105 CGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSIL 164
            G+Y  N  + II + AC    I    +   L  N +   +   +V + F          
Sbjct: 51  VGLYIDNSIQSIILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGF 110

Query: 165 SCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNIST 224
             +    +           ++        +     +     +    +         +I++
Sbjct: 111 QIVSLDDI---EFAGRDITTNGLLDNTMGIQYDTSNETVVPKESPSNILNTSFNLDDIAS 167

Query: 225 IMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIE 284
           IM+TSGTTG  K V  T +   A  +   +           +  + S LP+ HI    + 
Sbjct: 168 IMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFD-----RDTNWLSVLPIYHISGLSVL 222

Query: 285 THCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKK 343
              + +G ++      +   ++  I+  + T  S VP+  + +                 
Sbjct: 223 LRAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLM---------------- 266

Query: 344 LFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHV-EEF 402
                                   L +              LQ +L G A L   + E  
Sbjct: 267 ---------------------QQGLHEPY-----------NLQKILLGGAKLSATMIETA 294

Query: 403 LRVTSGAPLTQGYGLTESCSG-CFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALS 461
           L+     P+   +G+TE+CS     +   +     TVG+P   V+ ++++ P        
Sbjct: 295 LQY--NLPIYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKN-PNKE----- 346

Query: 462 SVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIG 501
               GE+ ++G  + +GY    D       +G+F+TGDI 
Sbjct: 347 --GHGELMIKGANVMNGYLYPTD-LTGTFENGYFNTGDIA 383

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548

 Score =  224 bits (573), Expect = 5e-67
 Identities = 92/472 (19%), Positives = 164/472 (34%), Gaps = 87/472 (18%)

Query: 46  WQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRC 105
                   +R      +       G        +Y E  + +   G A+++ G+    R 
Sbjct: 26  GTQLRKYMERYAKLGAIAFTNAVTGVD-----YSYAEYLEKSCCLGKALQNYGLVVDGRI 80

Query: 106 GIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILS 165
            +   NC E+ I + A     +   P  +      +   +  ++ +I F  +  +  +++
Sbjct: 81  ALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVIT 140

Query: 166 CLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDC-------ELPPKK 218
                      ++  + V                  + F++  T           +   +
Sbjct: 141 VQKTVTTIKTIVILDSKVDYR----------GYQCLDTFIKRNTPPGFQASSFKTVEVDR 190

Query: 219 KTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHI 278
           K  ++ IM +SG+TG PKGV LT++ IV             G   S      + +P  H 
Sbjct: 191 KEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPI--YGNQVSPGTAVLTVVPFHHG 248

Query: 279 YDQIIETHCIHKGCSI----GFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKI 334
           +        +  G  +     F   D    ++ +Q+ K T    VP ++           
Sbjct: 249 FGMFTTLGYLICGFRVVMLTKF---DEETFLKTLQDYKCTSVILVPTLFA---------- 295

Query: 335 SSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAP 394
                L+K                       + LL+    S +          + SG AP
Sbjct: 296 ----ILNK-----------------------SELLNKYDLSNLV--------EIASGGAP 320

Query: 395 LPIHV-EEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEAR---LE 450
           L   V E   R  +   + QGYGLTE+ S    +        G  G  +   +A+   L+
Sbjct: 321 LSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDK-PGASGKVVPLFKAKVIDLD 379

Query: 451 SVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGDIG 501
           +   +G +      RGE+C++G  L  GY   P+ T+E+I  +GW HTGDIG
Sbjct: 380 TKKSLGPNR-----RGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIG 426

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536

 Score =  223 bits (570), Expect = 1e-66
 Identities = 94/470 (20%), Positives = 160/470 (34%), Gaps = 89/470 (18%)

Query: 46  WQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRC 105
             +  ++     +   L     ++G V      TY +V   A R  S +   G+  GD  
Sbjct: 25  HSYVLENLSNHSSKPCL--INGANGDV-----YTYADVELTARRVASGLNKIGIQQGDVI 77

Query: 106 GIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILS 165
            ++  + PE+++A    + +               +      +   +   Q      +  
Sbjct: 78  MLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKD 137

Query: 166 CLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTI 225
                 + +  + S  +               C  + E  Q    +         ++  +
Sbjct: 138 FARESDVKVMCVDSAPD--------------GCLHFSELTQADENEAPQVDISPDDVVAL 183

Query: 226 MYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIET 285
            Y+SGTTG PKGV+LT++ ++  V                ED     LP+ HIY      
Sbjct: 184 PYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYF-HSEDVILCVLPMFHIYALNSIM 242

Query: 286 HC-IHKGCSI----GFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGAL 340
            C +  G  I     F   ++  L+  I++ K ++   VP V                ++
Sbjct: 243 LCGLRVGAPILIMPKF---EIGSLLGLIEKYKVSIAPVVPPVMM--------------SI 285

Query: 341 SKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHV- 399
           +K                       +P LD    S +R         + SG APL   + 
Sbjct: 286 AK-----------------------SPDLDKHDLSSLR--------MIKSGGAPLGKELE 314

Query: 400 EEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNM----IGTVGVPMTTVEARL---ESV 452
           +        A L QGYG+TE+       LA          G  G  +   E ++   E+ 
Sbjct: 315 DTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETG 374

Query: 453 PEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGDIG 501
             +  +       GEIC+RG+ +  GY   P+ T   I  +GW HTGDIG
Sbjct: 375 ASLPRNQ-----PGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIG 419

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550

 Score =  220 bits (563), Expect = 2e-65
 Identities = 90/440 (20%), Positives = 160/440 (36%), Gaps = 82/440 (18%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           +TY E ++ ++R   AM+  G+N   R  +   N  ++ + +       +   P  D   
Sbjct: 51  ITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYN 110

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
              +   +N ++ ++ FV +  +  IL+   +  +  K I+           +++     
Sbjct: 111 ERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIM----------DSKTDYQG 160

Query: 198 CFSWEEFLQ----LGTLDCELPPKK---KTNISTIMYTSGTTGEPKGVVLTNQAIVAEVL 250
             S   F+      G  + +  P+       I+ IM +SG+TG PKGV L ++       
Sbjct: 161 FQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFS 220

Query: 251 SVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSI----GFWRGDVRYLME 306
                  + G     +    S +P  H +        +  G  +     F   +    + 
Sbjct: 221 HARD--PIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRF---EEELFLR 275

Query: 307 DIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAA 366
            +Q+ K      VP ++                 +K                       +
Sbjct: 276 SLQDYKIQSALLVPTLFS--------------FFAK-----------------------S 298

Query: 367 PLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHV-EEFLRVTSGAPLTQGYGLTESCSGCF 425
            L+D    S +          + SG APL   V E   +      + QGYGLTE+ S   
Sbjct: 299 TLIDKYDLSNLH--------EIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAIL 350

Query: 426 TSLADVFNMIGTVGVPMTTVEAR---LESVPEMGYDALSSVPRGEICLRGNTLFSGYYKR 482
            +        G VG  +   EA+   L++   +G +      RGE+C+RG  + SGY   
Sbjct: 351 ITPEGDDK-PGAVGKVVPFFEAKVVDLDTGKTLGVNQ-----RGELCVRGPMIMSGYVNN 404

Query: 483 PDLTEEVIV-DGWFHTGDIG 501
           P+ T  +I  DGW H+GDI 
Sbjct: 405 PEATNALIDKDGWLHSGDIA 424

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504

 Score =  213 bits (545), Expect = 2e-63
 Identities = 70/430 (16%), Positives = 129/430 (30%), Gaps = 78/430 (18%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           LT+ E+        + + + G+ P  R  +   N  + +IA+ A +        L   L 
Sbjct: 30  LTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLK 89

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
           +  +  +I   E++ A +       +   + +     + I                  + 
Sbjct: 90  SAELAELIKRGEMTAAVIAVG--RQVADAIFQSGSGARIIF-----------------LG 130

Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV 257
               +          E P ++    + I YTSGTTG PK  ++  +A  + VL +     
Sbjct: 131 DLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV- 189

Query: 258 VTGKVCSEEDTYFSFLPLAHIYDQIIETH-CIHKGCSIGFWRG-DVRYLMEDIQELKPTM 315
             G      +     +PL H+          +    +            ++ +Q+ + T 
Sbjct: 190 --GLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTS 247

Query: 316 FSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFS 375
               P   D                                           L  +   +
Sbjct: 248 LFATPTHLDA------------------------------------------LAAAAAHA 265

Query: 376 KIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMI 435
                    L+ +    A +P  V E +           YG TE+ +  +          
Sbjct: 266 GSSLKLD-SLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPKT---- 320

Query: 436 GTVGVPMTTVEARLESVPEMGYDALSSVPR---GEICLRG-NTLFSGYYKRPDLTEEVIV 491
           GT   P    E R+  V   G      V     GE+ +   ++ F GY  +P  T E + 
Sbjct: 321 GTEMAPGFFSEVRI--VRIGG-GVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQ 377

Query: 492 DGWFHTGDIG 501
           DGW+ T D+ 
Sbjct: 378 DGWYRTSDVA 387

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505

 Score =  208 bits (532), Expect = 2e-61
 Identities = 90/429 (20%), Positives = 149/429 (34%), Gaps = 92/429 (21%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           LTY E+  AA        +  +    R  ++ +   E  +A+ A     +  VPL    G
Sbjct: 49  LTYAELAAAAGAT-----AGRIGGAGRVAVWATPAMETGVAVVAALLAGVAAVPLNPKSG 103

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
              +  I++ +  S+                                           + 
Sbjct: 104 DKELAHILSDSAPSLVLAPP-------------------------------DAELPPALG 132

Query: 198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV 257
                +                 + + ++YTSGTTG PKG V+  +A+   + ++   + 
Sbjct: 133 ALERVDVDVRARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQ 192

Query: 258 VTGKVCSEEDTYFSFLPLAHIYDQIIETHC-IHKGCSIGFWRG-DVRYLMEDIQELKPTM 315
            T      ED     LPL H++  ++     + +G S+             ++ +   TM
Sbjct: 193 WT-----GEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAARELND-GATM 246

Query: 316 FSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFS 375
             GVP +Y R                                          + ++L   
Sbjct: 247 LFGVPTMYHR------------------------------------------IAETLPAD 264

Query: 376 KIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMI 435
                     + ++SG+A LP+H  E +   +G  + + YG+TE+     +  AD     
Sbjct: 265 PELAKALAGARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNT-SVRADGEPRA 323

Query: 436 GTVGVPMTTVEARLESVPEMGYDALSSVP--RGEICLRGNTLFSGYYKRPDLTEEVIV-D 492
           GTVGVP+  VE RL  V E G    +      GEI +RG  LF+ Y  RPD T      D
Sbjct: 324 GTVGVPLPGVELRL--VEEDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTED 381

Query: 493 GWFHTGDIG 501
           G+F TGD+ 
Sbjct: 382 GFFRTGDMA 390

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979

 Score =  215 bits (549), Expect = 4e-61
 Identities = 104/473 (21%), Positives = 165/473 (34%), Gaps = 87/473 (18%)

Query: 46  WQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRC 105
             +   +         L      +G  G     TY +V+  + +  +     GVN  D  
Sbjct: 64  HDYIFQNISEFATKPCL-----INGPTGHV--YTYSDVHVISRQIAANFHKLGVNQNDVV 116

Query: 106 GIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILS 165
            +   NCPE++++  A + +  T            +      +   +   +   +  I  
Sbjct: 117 MLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKP 176

Query: 166 CLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTN---I 222
                 + +  I    +V   +          C  + E  Q  T   E+    + +   +
Sbjct: 177 LQNDDGVVIVCIDDNESVPIPE---------GCLRFTELTQSTTEASEVIDSVEISPDDV 227

Query: 223 STIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQI 282
             + Y+SGTTG PKGV+LT++ +V  V                +D     LP+ HIY   
Sbjct: 228 VALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYF-HSDDVILCVLPMFHIYALN 286

Query: 283 IETHC-IHKGCSI----GFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSG 337
               C +  G +I     F   ++  L+E IQ  K T+   VP +               
Sbjct: 287 SIMLCGLRVGAAILIMPKF---EINLLLELIQRCKVTVAPMVPPIVL------------- 330

Query: 338 GALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPI 397
            A++K                       +   +    S IR         + SGAAPL  
Sbjct: 331 -AIAK-----------------------SSETEKYDLSSIR--------VVKSGAAPLGK 358

Query: 398 HV-EEFLRVTSGAPLTQGYGLTESCSGCFTSLA----DVFNMIGTVGVPMTTVEARLESV 452
            + +        A L QGYG+TE+      SL           G  G  +   E ++   
Sbjct: 359 ELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVD- 417

Query: 453 PEMGYDALSSVP---RGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGDIG 501
           P+ G     S+     GEIC+RG+ +  GY   P  T E I  DGW HTGDIG
Sbjct: 418 PDTG----DSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIG 466

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529

 Score =  208 bits (531), Expect = 5e-61
 Identities = 86/466 (18%), Positives = 143/466 (30%), Gaps = 89/466 (19%)

Query: 47  QFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCG 106
            +     +            + D         TY E+ + A RF SA+R+ GV+P +R  
Sbjct: 27  AYLFRLNETRAGKTAY----IDDTGS-----TTYGELEERARRFASALRTLGVHPEERIL 77

Query: 107 IYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSC 166
           +   +     +A        +  V     L      +++ H+           + ++   
Sbjct: 78  LVMLDTVALPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQA 137

Query: 167 LPRC-CLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTI 225
           L        + IVS         +  E        +EE +       +       +I+  
Sbjct: 138 LESAEHDGCQLIVS---------QPRESEPRLAPLFEELIDAAAPAAKAAATGCDDIAFW 188

Query: 226 MYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVC---SEEDTYFSFLPLAHIYDQI 282
           +Y+SG+TG+PKG V T+  +            +  K     +E D  FS   L   Y   
Sbjct: 189 LYSSGSTGKPKGTVHTHANLYW-------TAELYAKPILGIAENDVVFSAAKLFFAYGLG 241

Query: 283 IETH-CIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGA 339
                 +  G +            +   + E +PT+F GVP       T           
Sbjct: 242 NGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVP-------T----------- 283

Query: 340 LSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHV 399
                    Y   L            +P L +     IR           S    LP  +
Sbjct: 284 --------LYANML-----------VSPNLPARADVAIRIC--------TSAGEALPREI 316

Query: 400 -EEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYD 458
            E F     G  +  G G TE     F S        GT G P+   E  L    E G+ 
Sbjct: 317 GERFTAHF-GCEILDGIGSTE-MLHIFLSNRAGAVEYGTTGRPVPGYEIEL--RDEAGHA 372

Query: 459 ALSSVPR---GEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIG 501
               VP    G++ ++G +    Y+   + +    +  W  +GD  
Sbjct: 373 ----VPDGEVGDLYIKGPSAAVMYWNNREKSRATFLGEWIRSGDKY 414

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617

 Score =  187 bits (478), Expect = 7e-53
 Identities = 68/437 (15%), Positives = 126/437 (28%), Gaps = 81/437 (18%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           L+Y+E+  AA     ++R +G+ PG+   +   N  E  I   A     +  V    +  
Sbjct: 51  LSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVLALFSHQ 110

Query: 138 ANAVEFIINHAEVSIAFVQENKIPS----ILSCLPRCCLYLKTIVSFANVSSSQKKEAEE 193
            + +    +  E ++               L+        ++ +                
Sbjct: 111 RSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLN------------ 158

Query: 194 LGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVD 253
                 + ++ +     D    P     ++    + GTTG PK +  T+      V    
Sbjct: 159 -DSGEHNLQDAINHPAEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSV 217

Query: 254 QMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETH--CIHKGCSIGFWRG-DVRYLMEDIQE 310
           ++   T     ++  Y   +P AH Y             G ++              I++
Sbjct: 218 EICQFT-----QQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEK 272

Query: 311 LKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLD 370
            +  + + VP                                                  
Sbjct: 273 HQVNVTALVPPAVSLWL-----------------------------------QALIEGES 297

Query: 371 SLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLAD 430
               +         L+ +  G A L   +   +    G  L Q +G+ E     +T L D
Sbjct: 298 RAQLA--------SLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAE-GLVNYTRLDD 348

Query: 431 VFNMI-GTVGVPMT-TVEARLESVPEMGYDALSSVPR---GEICLRGNTLFSGYYKRPDL 485
               I  T G PM    E  +      G      +P+   G +  RG   F GYYK P  
Sbjct: 349 SAEKIIHTQGYPMCPDDEVWV--ADAEGNP----LPQGEVGRLMTRGPYTFRGYYKSPQH 402

Query: 486 TEEVI-VDGWFHTGDIG 501
                  +G++ +GD+ 
Sbjct: 403 NASAFDANGFYCSGDLI 419

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539

 Score =  180 bits (459), Expect = 1e-50
 Identities = 82/478 (17%), Positives = 146/478 (30%), Gaps = 112/478 (23%)

Query: 46  WQFFCDSAKRIPNNQML--GGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGD 103
                D A +  +   +  G               +Y+E+   A R  +  +  G+   D
Sbjct: 28  GDLLRDRAAKYGDRIAITCGNTH-----------WSYRELDTRADRLAAGFQKLGIQQKD 76

Query: 104 RCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENK---- 159
           R  +   N  E+   + A        V    +  ++ + +    AE +   + +      
Sbjct: 77  RVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFD 136

Query: 160 ----IPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELP 215
                  + S LP     LK I+           EAEE       +     L T   +LP
Sbjct: 137 YRSLARQVQSKLP----TLKNIIVAG--------EAEE-------FLPLEDLHTEPVKLP 177

Query: 216 PKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPL 275
             K ++++ +  + G+TG  K +  T+   +  +    ++  +          Y + LP+
Sbjct: 178 EVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLD-----HSTVYLAALPM 232

Query: 276 AHIYDQIIETH--CIHKGCSI----GFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTG 329
           AH Y          ++ G  +                 I+  K T+ + VP +       
Sbjct: 233 AHNYPLSSPGVLGVLYAGGRVVLSPSP---SPDDAFPLIEREKVTITALVPPLAMVWM-- 287

Query: 330 ISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAML 389
                                               A        S ++         + 
Sbjct: 288 -----------------------------------DAASSRRDDLSSLQ--------VLQ 304

Query: 390 SGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMI-GTVGVPMT-TVEA 447
            G A         ++   G  L Q +G+ E     +T L D   +I  T G PM+   E+
Sbjct: 305 VGGAKFSAEAARRVKAVFGCTLQQVFGMAE-GLVNYTRLDDPEEIIVNTQGKPMSPYDES 363

Query: 448 RLESVPEMGYDALSSVPR---GEICLRGNTLFSGYYKRPDLTEEVIV-DGWFHTGDIG 501
           R+    +   D    V     G +  RG     GYYK  +        DG++ TGDI 
Sbjct: 364 RV--WDDHDRD----VKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIV 415

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544

 Score =  179 bits (456), Expect = 3e-50
 Identities = 65/440 (14%), Positives = 122/440 (27%), Gaps = 87/440 (19%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           L+Y E+   +    + +  +G+  GD   +   N  E+ I   A     +  +    +  
Sbjct: 56  LSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVVLNALYSHR 115

Query: 138 ANAVEFIINHAEVSIAFVQEN----KIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEE 193
              +   I   +  +               +  L    L  + I+             + 
Sbjct: 116 QYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILML---------NHQA 166

Query: 194 LGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVD 253
                  W E         +        ++    + G+TG PK +  T+      V +  
Sbjct: 167 TDFGLLDWIE--TPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASA 224

Query: 254 QMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETH--CIHKGCSI----GFWRGDVRYLMED 307
           ++  +              LP  H +          +H G  +         +       
Sbjct: 225 EICGLN-----SNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAPNP---EPLNCFSI 276

Query: 308 IQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAP 367
           IQ  +  M S VP                                               
Sbjct: 277 IQRHQVNMASLVPSAVIMWL-------------------------------------EKA 299

Query: 368 LLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTS 427
                    ++         +  G A  P  +   +       L Q +G+ E     +T 
Sbjct: 300 AQYKDQIQSLK--------LLQVGGASFPESLARQVPEVLNCKLQQVFGMAE-GLVNYTR 350

Query: 428 LADVFNMI-GTVGVPMT-TVEARLESVPEMGYDALSSVPR---GEICLRGNTLFSGYYKR 482
           L D    I  T G P++   E ++  V E   +    VP    G +  RG   F GYY+ 
Sbjct: 351 LDDSDEQIFTTQGRPISSDDEIKI--VDEQYRE----VPEGEIGMLATRGPYTFCGYYQS 404

Query: 483 PDLTEEVI-VDGWFHTGDIG 501
           P+   +V   D ++++GD+ 
Sbjct: 405 PEHNSQVFDEDNYYYSGDLV 424

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541

 Score =  144 bits (365), Expect = 1e-37
 Identities = 107/484 (22%), Positives = 160/484 (33%), Gaps = 141/484 (29%)

Query: 67  VSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQA 126
           VS    G     TY EVY  A R    +R+ GV  GDR    G N       +EA     
Sbjct: 37  VSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFR---HLEA----- 88

Query: 127 ITY--VPLYDTLGA-----------NAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLY 173
             Y  VP    +GA             + +I+NHAE  +     N +P + +        
Sbjct: 89  --YFAVPG---MGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGEL-KT 142

Query: 174 LKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTG 233
           ++  V             E+      ++EE L        +P   +     + YT+GTTG
Sbjct: 143 VQHFVVMD----------EKAPEGYLAYEEALGEEADPVRVP---ERAACGMAYTTGTTG 189

Query: 234 EPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCS 293
            PKGVV +++A+V   L+   +        SE+D     +P+ H               +
Sbjct: 190 LPKGVVYSHRALVLHSLAASLVDGTA---LSEKDVVLPVVPMFH--------------VN 232

Query: 294 ------IGFWRG----------DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSG 337
                      G          D   L+E       T  +GVP V+              
Sbjct: 233 AWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVW-------------- 278

Query: 338 GALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPI 397
                                         L D L             + ++ G+A    
Sbjct: 279 -----------------LA-----------LADYL--ESTGHRLKTLRRLVVGGSAAPRS 308

Query: 398 HVEEFLRVTSGAPLTQGYGLTESC---SGCF-------TSLADVFNMIGTVGVPMTTVEA 447
            +  F R+  G  + QGYGLTE+       F        S  +   +    G+P+  V  
Sbjct: 309 LIARFERM--GVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRL 366

Query: 448 RLESVPEMGYDALSSVPR-----GEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGDIG 501
           R+    E G      VP+     GE+ L+G  +  GYY   + T   +  DG+F TGDI 
Sbjct: 367 RV--ADEEGRP----VPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIA 420

Query: 502 EWQP 505
            W  
Sbjct: 421 VWDE 424

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570

 Score =  131 bits (331), Expect = 5e-33
 Identities = 61/441 (13%), Positives = 139/441 (31%), Gaps = 86/441 (19%)

Query: 78  LTYQEVYDAAIRFGSAMRSR-GVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTL 136
             ++E+ + + +  + +    G+  GDR  +     PEW + +  C    + ++P    +
Sbjct: 74  WNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQM 133

Query: 137 GANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGV 196
            +  + + +  ++       +  I  + +    C   L+  +  +          E+   
Sbjct: 134 KSTDILYRLQMSKAKAIVAGDEVIQEVDTVASEC-PSLRIKLLVS----------EKSCD 182

Query: 197 SCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMF 256
              ++++ L   +             S I +TSGT+G PK    +  ++  +        
Sbjct: 183 GWLNFKKLLNEASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDAGWT 242

Query: 257 VVTGKVCSEEDTYFSFLPLA---HIYDQIIETHCIHKGCSIGFWRG---DVRYLMEDIQE 310
            +        D  ++        +I   ++E      G           D   +++ +  
Sbjct: 243 GLQ-----ASDIMWTISDTGWILNILCSLMEP--WALGACTFVHLLPKFDPLVILKTLSS 295

Query: 311 LKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLD 370
                  G P VY                   ++           +++ +   K      
Sbjct: 296 YPIKSMMGAPIVY-------------------RML----------LQQDLSSYK------ 320

Query: 371 SLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLAD 430
              F  ++          ++    L     E  R  +G  + + YG TE           
Sbjct: 321 ---FPHLQNC--------VTVGESLLPETLENWRAQTGLDIRESYGQTE-TGLTCMVSKT 368

Query: 431 VFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPR---GEICLRGNT-----LFSGYYKR 482
           +    G +G   +  + ++  + + G    + +P    G+I +R        +FSGY   
Sbjct: 369 MKIKPGYMGTAASCYDVQI--IDDKG----NVLPPGTEGDIGIRVKPIRPIGIFSGYVDN 422

Query: 483 PDLTEEVIVDGWFHTGDIGEW 503
           PD T   I   ++  GD G  
Sbjct: 423 PDKTAANIRGDFWLLGDRGIK 443

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480

 Score =  114 bits (288), Expect = 1e-27
 Identities = 74/503 (14%), Positives = 138/503 (27%), Gaps = 122/503 (24%)

Query: 53  AKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNC 112
           A+  P++             G  + LT+ ++Y   +     +   G   GDR  I     
Sbjct: 34  ARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQG 92

Query: 113 PEWIIAMEACNSQAITYVPLYDTLGANAVE---FIINHAEVSIAFVQENKIPSILSCLPR 169
            E+++A           VPL    G    E    +++ +         + +  ++  + R
Sbjct: 93  LEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVAR 152

Query: 170 CCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTS 229
                                  E   S    +               +  + + + YTS
Sbjct: 153 --------------------RPGESPPSIIEVDLLDLDAPNGYTFKEDEYPSTAYLQYTS 192

Query: 230 GTTGEPKGVVLTNQAIVAEVLSVDQMFVVT-GKVCSEEDTYFSFLPLAHIYDQIIETH-- 286
           G+T  P GVV+++Q +      +   +      +        S+LP  H    ++     
Sbjct: 193 GSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHDM-GLVIGICA 251

Query: 287 CIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRV-------YDRIYTGISNKISSGGA 339
            I  G            L        P  F   P             ++   N       
Sbjct: 252 PILGGYPA--------VLT------SPVSFLQRPARWMHLMASDFHAFSAAPN------- 290

Query: 340 LSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIH- 398
                  FA+       ++    + A    D      I            SG+  +    
Sbjct: 291 -------FAFELAA---RRTTDDDMAG--RD---LGNILTIL--------SGSERVQAAT 327

Query: 399 VEEFLRVTSGAPLTQ-----GYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEA-RLESV 452
           ++ F    +   L +      Y L E+      + +       TV     ++ A   +  
Sbjct: 328 IKRFADRFARFNLQERVIRPSYWLAEATVYV--ATSKPGQPPETVDFDTESLSAGHAKPC 385

Query: 453 PEMGYDALSSVPR----------------------GEICLRGNTLFSGYYKRPDLTEEVI 490
              G  +L S                         GEI + G+ + +GY+++PD +E   
Sbjct: 386 AGGGATSLISYMLPRSPIVRIVDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTF 445

Query: 491 V------------DGWFHTGDIG 501
                          W  TGD G
Sbjct: 446 GGKIVTPSPGTPEGPWLRTGDSG 468

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590

 Score =  110 bits (278), Expect = 5e-26
 Identities = 84/473 (17%), Positives = 153/473 (32%), Gaps = 118/473 (24%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           +TY+++   A    + +++ G  PGDR  +  +     I A   C       VP+Y    
Sbjct: 41  MTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVPIYPPAQ 100

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILS-CLPRCCLYLKTIVSFANVSSSQKKEAEELGV 196
              ++                K   I++   P   L +   +     +       + L +
Sbjct: 101 EKLLD----------------KAQRIVTNSKPVIVLMIADHIKKF-TADELNTNPKFLKI 143

Query: 197 SCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMF 256
              + E      +   +    K  +I+ + YTSG+T  PKGV++++  ++  +  +   F
Sbjct: 144 PAIALESIELNRSSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSF 203

Query: 257 VVTGKVCSEEDTYFSFLPLAHIYDQIIETHC--IHKGCSIGFWRGDVRYLMEDIQELKPT 314
            +      +E   FS+LP  H    +I      I+ G            +M       P 
Sbjct: 204 HMN-----DETIIFSWLPPHHDM-GLIGCILTPIYGGIQA--------IMM------SPF 243

Query: 315 MFSGVPRV-------YDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAP 367
            F   P         Y    +G  N              FAY+Y +   K+   + K   
Sbjct: 244 SFLQNPLSWLKHITKYKATISGSPN--------------FAYDYCV---KRIREEKKEG- 285

Query: 368 LLDSLVFSKIREAFGGRLQAMLSGAAPLPIH-VEEFLRVTSGAPLTQ-----GYGLTESC 421
            LD    S    AF        +GA P+    +E F +        +      YGL E+ 
Sbjct: 286 -LD---LSSWVTAF--------NGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEAT 333

Query: 422 SGCFTSLADVFNMIGTVGVPMTTVEA-RLESVPEMGYDALSSV----PR----------- 465
                +     +   T+ +     +  R+    +    +   V    P            
Sbjct: 334 LLV--TGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQEVKIIDPDTL 391

Query: 466 --------GEICLRGNTLFSGYYKRPDLTEEVIV---------DGWFHTGDIG 501
                   GEI ++ N++  GY+ +P+ T                +  TGD+G
Sbjct: 392 IPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLG 444

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score = 85.3 bits (212), Expect = 1e-17
 Identities = 26/176 (14%), Positives = 56/176 (31%), Gaps = 16/176 (9%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
            T++++   + +  +     G+  GD   +   +  ++   M   +      VP    L 
Sbjct: 87  FTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPATHMLK 146

Query: 138 ANAVEFIINHAEVS--IAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELG 195
              + + I  A +   +   +++    +      C      I            E     
Sbjct: 147 TRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAEC----GDIPLKKAKVGGDVLEGWI-- 200

Query: 196 VSCFSWEEFLQLGTLDCELP-PKKKTN---ISTIMYTSGTTGEPKGVVLTNQAIVA 247
                + + L+  +   E P  +  T    I  + ++SGT G PK V   N   + 
Sbjct: 201 ----DFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLG 252

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score = 51.4 bits (124), Expect = 5e-07
 Identities = 31/111 (27%), Positives = 45/111 (40%), Gaps = 16/111 (14%)

Query: 399 VEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYD 458
              FL  T G  L +G+G TE+      +   +    G++G P    +  L  +   G  
Sbjct: 358 FNRFLEFT-GIKLMEGFGQTETVVTI-ATFPWMEPKPGSIGKPTPGYKIEL--MDRDG-- 411

Query: 459 ALSSVPR---GEICLRGNT-----LFSGYYKRPDLTEEVIVDGWFHTGDIG 501
                     GEI +         LF  Y K P+ TEE   DG++HTGD+ 
Sbjct: 412 --RLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHDGYYHTGDMA 460

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512

 Score = 64.8 bits (159), Expect = 3e-11
 Identities = 61/443 (13%), Positives = 123/443 (27%), Gaps = 133/443 (30%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAI-----TYVPL 132
           +TY+++ + +      + S   +      +YG   PE II                Y+P+
Sbjct: 27  ITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINF-----LGCVKAGHAYIPV 81

Query: 133 YDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAE 192
             ++ A+ V+ I  ++   +         + L         LK I      ++       
Sbjct: 82  DLSIPADRVQRIAENSGAKLLLSATAVTVTDLPVRIVSEDNLKDIFFTHKGNTP------ 135

Query: 193 ELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSV 252
                             +  +          I+YTSG+TG PKGV +T   +V+     
Sbjct: 136 ----------------NPEHAVKG---DENFYIIYTSGSTGNPKGVQITYNCLVSFTKWA 176

Query: 253 DQMFVVTGKVCSEEDTY-----FSF--------LPL---AHIYDQIIETHCIHKGCSIGF 296
            + F +          +     FSF          L     ++        +        
Sbjct: 177 VEDFNLQ-----TGQVFLNQAPFSFDLSVMDIYPSLVTGGTLW---AIDKDMIA------ 222

Query: 297 WRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNM 356
                + L   +++    +++  P                                    
Sbjct: 223 ---RPKDLFASLEQSDIQVWTSTP------------------------------------ 243

Query: 357 KKGMPQNKAAPLLDSLV-FSKIREAFGGRLQAMLSGAAPLPI-HVEEFLRVTSGAPLTQG 414
                        +  +  +   E+    ++  L     LP     + +     A +   
Sbjct: 244 ----------SFAEMCLMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNT 293

Query: 415 YGLTES--CSGCFTSLADVFNMIGTV--GVPM--TTV---EARLESVPEMGYDALSSVPR 465
           YG TE+           +V +   ++  G       +   +      P  G         
Sbjct: 294 YGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMKEDGTIAP-DG------EK- 345

Query: 466 GEICLRGNTLFSGYYKRPDLTEE 488
           GEI + G ++  GY   P+LTE+
Sbjct: 346 GEIVIVGPSVSVGYLGSPELTEK 368

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Length = 369

 Score = 54.7 bits (131), Expect = 3e-08
 Identities = 41/288 (14%), Positives = 80/288 (27%), Gaps = 40/288 (13%)

Query: 221 NISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD 280
           +   +  + GTTG PK VV  +  I A +      +          +T  +     HI  
Sbjct: 92  SHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGR-PSGNTLAAIPTGPHIVG 150

Query: 281 QIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGAL 340
            I +   +  G        D R++   + E      + V +    +   + N + +    
Sbjct: 151 AINKERALRLGGMFFSIDIDPRWVKRSLSE---GDTATVRKYTHHLVDQVQNTLMNQDI- 206

Query: 341 SKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLV-FSKIREAFGGRLQAMLSGAAPLPIHV 399
            + L                P     P+L  L+   ++       L  +  G   L +  
Sbjct: 207 -RFLV-------------TTP-----PVLRELLKRPEVVLQMKQSLAQITLGGTELNLDE 247

Query: 400 EEFLR--VTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESV-PEMG 456
            +F+   +      +  YG T +     + L    +           +   +  V     
Sbjct: 248 IKFIASEILPDCEFSASYGSTSALGVSRSLLITSESQQVIYDSFSPFITYDV--VDSITA 305

Query: 457 YDALSSVP---RGEIC---LRGNTLFSGYYKRPDLTEEVIVDGWFHTG 498
                 V    RG +    L     +    +R        V G+    
Sbjct: 306 QT----VEYGERGNVIVTHLSPWAFYPRVAERDTAIRLPGVSGFAGDR 349

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620

 Score = 53.7 bits (130), Expect = 9e-08
 Identities = 31/143 (21%), Positives = 45/143 (31%), Gaps = 23/143 (16%)

Query: 379 EAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTES--CSGCFT-SLADVFNMI 435
           +  GG  Q +  G      HV   L       L  GYG TE+   + C   +  D+    
Sbjct: 273 DCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDLEEDD 332

Query: 436 GTVGVPM--TTV---EARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI 490
             +G  +  T V   +   + + E           GEI   G  L  GY      T    
Sbjct: 333 IPIGKAIAGTAVLLLDEHGQEIAEPD------RA-GEIVAFGAGLAQGYRNDAARTRASF 385

Query: 491 VDGWFH--------TGDIGEWQP 505
           V+  +         TGD   +  
Sbjct: 386 VELPYRGRLLRAYRTGDRARYDE 408

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620

 Score = 52.5 bits (127), Expect = 2e-07
 Identities = 28/174 (16%), Positives = 48/174 (27%), Gaps = 41/174 (23%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAI-----TYVPL 132
           + Y+++ D+A +    +      PG   G+YG    E I  +      AI      Y+ +
Sbjct: 53  VDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCL-----LAILLSGHHYLYI 107

Query: 133 YDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAE 192
                A     +    +  +                                S+    A 
Sbjct: 108 DLKQPAAWNAELCRQVDCRLILDC----------------------------STTPTPAN 139

Query: 193 ELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIV 246
            L                           I+ I ++SGTTG PK +  T+  I 
Sbjct: 140 GLPCVPVRHLPAAPASVARPCFAA---DQIAYINFSSGTTGRPKAIACTHAGIT 190

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304

 Score = 53.4 bits (129), Expect = 1e-07
 Identities = 29/174 (16%), Positives = 59/174 (33%), Gaps = 35/174 (20%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAI-----TYVPL 132
           L+Y+E+ + A R    ++  G   G    +Y     E +I +       +      Y+P+
Sbjct: 490 LSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGI-----LGVLKAGAAYLPV 544

Query: 133 YDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAE 192
              L  + + +++  +  +     +     +            T+         ++    
Sbjct: 545 DPKLPEDRISYMLADSAAACLLTHQ----EMKEQAAELPYTGTTLFIDDQTRFEEQASD- 599

Query: 193 ELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIV 246
                                + P    + + IMYTSGTTG+PKG + T+  I 
Sbjct: 600 -----------------PATAIDPN---DPAYIMYTSGTTGKPKGNITTHANIQ 633

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304

 Score = 46.5 bits (111), Expect = 2e-05
 Identities = 35/138 (25%), Positives = 57/138 (41%), Gaps = 26/138 (18%)

Query: 385 LQAMLSGAAPLPI-HVEEFLRVTSGAPLTQGYGLTES--CSGCFTSLADVFNMIGTV--G 439
           L+ +L G     + HV + LR+     L   YG TE    +     + D+ + I ++  G
Sbjct: 722 LRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHV-VHDLPDSISSLPIG 780

Query: 440 VPMTTVE-----ARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGW 494
            P++         + +  P  G         GE+C+ G  +  GY  R DLT+E  ++  
Sbjct: 781 KPISNASVYILNEQSQLQP-FG------AV-GELCISGMGVSKGYVNRADLTKEKFIENP 832

Query: 495 FH-------TGDIGEWQP 505
           F        TGD+  W P
Sbjct: 833 FKPGETLYRTGDLARWLP 850

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563

 Score = 52.9 bits (128), Expect = 2e-07
 Identities = 36/207 (17%), Positives = 69/207 (33%), Gaps = 49/207 (23%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAI-----TYVPL 132
           LTY E+   A +       +G+      GI      +  I +      A+      YVP+
Sbjct: 65  LTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGI-----LAVLKAGGAYVPI 119

Query: 133 YDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAE 192
                   +++I++ ++  +   Q+     ++  +       +                 
Sbjct: 120 DIEYPKERIQYILDDSQARMLLTQK----HLVHLIHNIQFNGQVE--------------- 160

Query: 193 ELGVSCFSWEEFLQLGT--LDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVL 250
                 F  +         L         T+++ ++YTSGTTG PKG +L ++ I    +
Sbjct: 161 -----IFEEDTIKIREGTNLHVPSKS---TDLAYVIYTSGTTGNPKGTMLEHKGISNLKV 212

Query: 251 SVDQMFVVTGKVCSEEDTY-----FSF 272
             +    VT     E+D        SF
Sbjct: 213 FFENSLNVT-----EKDRIGQFASISF 234

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563

 Score = 45.9 bits (110), Expect = 2e-05
 Identities = 32/132 (24%), Positives = 52/132 (39%), Gaps = 25/132 (18%)

Query: 388 MLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTES--CSGCFTSLADVFNMIGTVGVPMTTV 445
           + +G+A  P  V ++            YG TE+  C+  + +  +       +G P+   
Sbjct: 299 ITAGSATSPSLVNKWKE---KVTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNT 355

Query: 446 E-----ARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFH---- 496
           +       L+    +G         GE+C+ G  L  GY+KRP+LT +  VD  F     
Sbjct: 356 QIYIVDENLQLKS-VG------EA-GELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEK 407

Query: 497 ---TGDIGEWQP 505
              TGD   W  
Sbjct: 408 LYKTGDQARWLS 419

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Length = 652

 Score = 50.6 bits (122), Expect = 7e-07
 Identities = 15/45 (33%), Positives = 24/45 (53%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC 122
           ++Y+E++    RF + +   G+  GD   IY    PE  +AM AC
Sbjct: 108 ISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLAC 152

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562

 Score = 50.3 bits (121), Expect = 9e-07
 Identities = 30/184 (16%), Positives = 63/184 (34%), Gaps = 33/184 (17%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAI-----TYVPL 132
            TY+++ + A +  + +    +  G    +           +       I     TYVP+
Sbjct: 56  WTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAFAII-----VGIMKSGNTYVPI 109

Query: 133 YDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAE 192
              L  +   F++  +  ++AFV +N    +        L  K      N+S+       
Sbjct: 110 EAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVELPPETKVLDTKNQSFIENLSTQD----- 164

Query: 193 ELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSV 252
                            +    P       + ++YTSG+TG PKGV ++   + +   + 
Sbjct: 165 --------------TSDILNNYPE---NLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAW 207

Query: 253 DQMF 256
            ++ 
Sbjct: 208 GKLI 211

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521

 Score = 49.1 bits (118), Expect = 2e-06
 Identities = 28/174 (16%), Positives = 58/174 (33%), Gaps = 37/174 (21%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAIT-----YVPL 132
            TY ++   +    + + S  +       ++G+   + +         A+T     Y+P+
Sbjct: 30  RTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATF-----VALTKSGHAYIPV 84

Query: 133 YDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAE 192
                   +  II  A+ S+    E + P  +  +    L                    
Sbjct: 85  DVHSAPERILAIIEIAKPSLIIAIE-EFPLTIEGISLVSL-------------------- 123

Query: 193 ELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIV 246
                       L     +      K  +   I++TSGTTG+PKGV +++  ++
Sbjct: 124 -----SEIESAKLAEMPYER-THSVKGDDNYYIIFTSGTTGQPKGVQISHDNLL 171

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521

 Score = 44.1 bits (105), Expect = 9e-05
 Identities = 24/131 (18%), Positives = 36/131 (27%), Gaps = 21/131 (16%)

Query: 388 MLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTES--CSGCFTSLADVFNMIGTV--GVPMT 443
              G         +       A +   YG TE+           ++ +    +  G P  
Sbjct: 270 YFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREMVDNYTRLPIGYPKP 329

Query: 444 TVE-----ARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWF--- 495
                      + +   G         GEI + G  +  GY   P+ T E          
Sbjct: 330 DSPTYIIDEDGKELS-SG------EQ-GEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPA 381

Query: 496 -HTGDIGEWQP 505
            HTGDIG    
Sbjct: 382 YHTGDIGSLTE 392

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 Length = 663

 Score = 46.0 bits (110), Expect = 2e-05
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 78  LTYQEVYDAAIRFGSAMR-SRGVNPGDRCGIYGSNCPEWIIAMEAC 122
           +TY+E+ +   +    +  S GV  GD   +Y    PE II + A 
Sbjct: 114 ITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAI 159

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511

 Score = 43.6 bits (104), Expect = 1e-04
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 10/53 (18%)

Query: 225 IMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTY-----FSF 272
           I+YTSG+TG PKGV ++   + +    +   F V+         +     FSF
Sbjct: 148 IIYTSGSTGNPKGVQISAANLQSFTDWICADFPVS-----GGKIFLNQAPFSF 195

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511

 Score = 42.1 bits (100), Expect = 3e-04
 Identities = 23/110 (20%), Positives = 37/110 (33%), Gaps = 17/110 (15%)

Query: 388 MLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTES--CSGCFTSLADVFNMIGTV--GVPMT 443
           M  G        +  L     A +   YG TE+           DV +   ++  G    
Sbjct: 266 MFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVISRSESLPVGFAKP 325

Query: 444 TVE-----ARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEE 488
            +         + +P  G         GEI + G ++  GY   P+LTE+
Sbjct: 326 DMNIFIMDEEGQPLP-EG------EK-GEIVIAGPSVSRGYLGEPELTEK 367

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 4e-04
 Identities = 49/349 (14%), Positives = 93/349 (26%), Gaps = 117/349 (33%)

Query: 61  MLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME 120
           +LG      GK     W+                 S  V       I+      W+  ++
Sbjct: 158 VLGS-----GKT----WVA-----------LDVCLSYKVQCKMDFKIF------WL-NLK 190

Query: 121 ACNSQAITYVP---LYDTLGANAVEFIINHAEVSIAFVQENKIPSILSC---LPRCCLYL 174
            CNS          L   +  N      + + + +           L        C L L
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL 250

Query: 175 KTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGE 234
                  NV +++            +W  F     L C      K               
Sbjct: 251 ------LNVQNAK------------AWNAF----NLSC------KI-------------- 268

Query: 235 PKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSI 294
              ++ T    V + LS      +     S +    +  P     D++            
Sbjct: 269 ---LLTTRFKQVTDFLSAATTTHI-----SLDHHSMTLTP-----DEVKSL--------- 306

Query: 295 GFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLG 354
                 ++YL    Q+L   + +  PR            +S      +       N+K  
Sbjct: 307 -L----LKYLDCRPQDLPREVLTTNPRR-----------LSIIAESIRDGLATWDNWKHV 350

Query: 355 NMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFL 403
           N  K     +++  L+ L  ++ R+ F     ++   +A +P  +   +
Sbjct: 351 NCDKLTTIIESS--LNVLEPAEYRKMF--DRLSVFPPSAHIPTILLSLI 395

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	508
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	100.0
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	100.0
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	100.0
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	100.0
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	100.0
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	100.0
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	100.0
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	100.0
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	100.0
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	100.0
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	100.0
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	100.0
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	100.0
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	100.0
4gr5_A	570	Non-ribosomal peptide synthetase; MBTH-like domain	100.0
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	100.0
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	100.0
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	100.0
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	100.0
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	100.0
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	100.0
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	100.0
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	100.0
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	100.0
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	100.0
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	100.0
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	100.0
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	100.0
4gs5_A	358	Acyl-COA synthetase (AMP-forming)/AMP-acid ligase	100.0
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	100.0
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	100.0
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	99.98
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	99.96
4eql_A	581	4-substituted benzoates-glutamate ligase GH3.12; f	96.76
4b2g_A	609	GH3-1 auxin conjugating enzyme; signaling protein,	95.92
4epl_A	581	Jasmonic acid-amido synthetase JAR1; ANL adenylati	95.3
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	91.89
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	91.11
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	90.34
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	85.52

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}

Probab=100.00  E-value=5.4e-61  Score=499.37  Aligned_cols=402  Identities=22%  Similarity=0.286  Sum_probs=338.3

Q ss_pred             CCCCCCCHHHHHHHHHHhCCCCCceeeeeccCCC--CCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhH
Q 010536           38 SPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGK--VGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEW  115 (508)
Q Consensus        38 ~~~~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~--~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~  115 (508)
                      .+....++.++|+++++++|+++|+++.   ++.  .+.++++||+||.++++++|++|.+.|+++||+|+++++|++++
T Consensus        14 ~~~~~~~l~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~   90 (549)
T 3g7s_A           14 LYYPKISLADRIDAAAEKFGEKTAIISA---EPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDY   90 (549)
T ss_dssp             CCCCCCCTTHHHHHHHHHHTTSEEEEEE---SSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH
T ss_pred             CCcCCCCHHHHHHHHHHhCCCceEEEeC---CCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH
Confidence            3455689999999999999999999987   521  23447899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcC
Q 010536          116 IIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELG  195 (508)
Q Consensus       116 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (508)
                      +++++||+++|++++||+|.++.+++.++++.++++++|++......+.......  ....++..+..            
T Consensus        91 ~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~------------  156 (549)
T 3g7s_A           91 VMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKT--GVERVFVVGGE------------  156 (549)
T ss_dssp             HHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTS--CCCEEEEETCS------------
T ss_pred             HHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhC--CCcEEEEeCCC------------
Confidence            9999999999999999999999999999999999999999988777665544322  24455554322            


Q ss_pred             ceeeeHHHHHhcCCCCCCCCCCCC-CCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecC
Q 010536          196 VSCFSWEEFLQLGTLDCELPPKKK-TNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLP  274 (508)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p  274 (508)
                        ...++++..............+ +++++|+|||||||.||||.++|+++...+......+     .+..+|++++.+|
T Consensus       157 --~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~~~~~p  229 (549)
T 3g7s_A          157 --VNSLSEVMDSGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVAT-----GLSHMDTIVGCMP  229 (549)
T ss_dssp             --SSCHHHHHHHSCSCCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHH-----CCCTTCEEECCSC
T ss_pred             --CcCHHHHHhcCccccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHc-----CCCCCCEEEEeCc
Confidence              2356666655433223333334 8999999999999999999999999999998887776     7889999999999


Q ss_pred             hHHHHHHHHHHHHHHcCcEEEEec-CCHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHh
Q 010536          275 LAHIYDQIIETHCIHKGCSIGFWR-GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKL  353 (508)
Q Consensus       275 l~~~~g~~~~~~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (508)
                      ++|.+++...+.++..|+++++.+ +++..+++.++++++|+++++|+++..|++........                 
T Consensus       230 ~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-----------------  292 (549)
T 3g7s_A          230 MFHSAEFGLVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKT-----------------  292 (549)
T ss_dssp             TTSHHHHHHHTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCC-----------------
T ss_pred             HHHHHHHHHHHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhccc-----------------
Confidence            999999888888999999999887 49999999999999999999999999987644322100                 


Q ss_pred             hhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHh----cC---CceeeecccccCCcceee
Q 010536          354 GNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVT----SG---APLTQGYGLTESCSGCFT  426 (508)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~----~~---~~v~~~YG~TE~~~~~~~  426 (508)
                                        .++        +++|.+++||+++++++.+++.+.    ++   ..+++.||+||++++++.
T Consensus       293 ------------------~~~--------~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~  346 (549)
T 3g7s_A          293 ------------------YDW--------SYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTT  346 (549)
T ss_dssp             ------------------CCC--------TTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEEEE
T ss_pred             ------------------CCc--------cceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccceEeccccchhhhc
Confidence                              011        389999999999999999999887    66   899999999999988877


Q ss_pred             ccCCCCcccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccc---cCC--ccccCcEE
Q 010536          427 SLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI---VDG--WFHTGDIG  501 (508)
Q Consensus       427 ~~~~~~~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~---~~g--w~~TGDlg  501 (508)
                      .........+++|+|+++++++|+|.+++..++.  |+.|||+|+|++++.||+++++.+.+.|   .+|  ||+|||+|
T Consensus       347 ~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~--g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDl~  424 (549)
T 3g7s_A          347 NPPLRLDKSTTQGVPMSDIELKVISLEDGRELGV--GESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVG  424 (549)
T ss_dssp             CCGGGGGGTTSCCEECTTCEEEEECSSSCCEECT--TCCEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEEEEEEE
T ss_pred             CCccccCcCCCccccCCCCEEEEEeCCCCcCCCC--CCceEEEEECcchhhhhCCChhhhhhhhhccCCCCceEccCcEE
Confidence            6655545558999999999999999666665554  4999999999999999999999999998   677  99999999


Q ss_pred             EEcCCCC
Q 010536          502 EWQPMEL  508 (508)
Q Consensus       502 ~~d~dG~  508 (508)
                      ++|+||+
T Consensus       425 ~~~~dG~  431 (549)
T 3g7s_A          425 FIDEEGF  431 (549)
T ss_dssp             EECTTSC
T ss_pred             EEcCCce
Confidence            9999995

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*

Probab=100.00  E-value=1.8e-61  Score=501.57  Aligned_cols=416  Identities=22%  Similarity=0.298  Sum_probs=337.4

Q ss_pred             CCCCcccccccccCCCCCCCCCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCC
Q 010536           20 PSGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGV   99 (508)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv   99 (508)
                      |+...+|++......++.    ..++.++|.++++++|+++|+++.   ++.    +.+||+||.++++++|++|.+.|+
T Consensus         3 ~~~~~i~~~~~~~~~~p~----~~~l~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~Gv   71 (536)
T 3ni2_A            3 PQEEFIFRSKLPDIYIPK----NLPLHSYVLENLSNHSSKPCLING---ANG----DVYTYADVELTARRVASGLNKIGI   71 (536)
T ss_dssp             --CCCCBCCSSCCCCCCS----SCCHHHHHTTTGGGSTTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHTTC
T ss_pred             cccceEEecCCCCCCCCC----CCcHHHHHHHHhhcCCCceEEEEC---CCC----CEEEHHHHHHHHHHHHHHHHHcCC
Confidence            345667887776544442    478999999999999999999875   332    689999999999999999999999


Q ss_pred             CCCCEEEEEcCCcHhHHHHHHHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEE
Q 010536          100 NPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVS  179 (508)
Q Consensus       100 ~~gd~Vai~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~  179 (508)
                      ++||+|+++++|+++++++++||+++|++++|++|.++.+++.++++.++++++|++......+.+.....  .. .++.
T Consensus        72 ~~gd~V~i~~~~~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~--~~-~~~~  148 (536)
T 3ni2_A           72 QQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARES--DV-KVMC  148 (536)
T ss_dssp             CTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHH--TC-EEEE
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhc--Cc-eEEE
Confidence            99999999999999999999999999999999999999999999999999999999987766654433211  11 3334


Q ss_pred             ecCCCchhhhhhhhcCceeeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhc
Q 010536          180 FANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVT  259 (508)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~  259 (508)
                      ++...           .....++++..............++++++|+|||||||.||||.++|++++..+........ .
T Consensus       149 ~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~-~  216 (536)
T 3ni2_A          149 VDSAP-----------DGCLHFSELTQADENEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDN-P  216 (536)
T ss_dssp             SSCCC-----------TTCEETHHHHTSCGGGCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSS-C
T ss_pred             ecCCC-----------CCccCHHHHhhccccccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhcc-c
Confidence            33221           12345666655443333444567899999999999999999999999999988766433210 0


Q ss_pred             cccCCCCcEEEEecChHHHHHHHH-HHHHHHcCcEEEEec-CCHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcC
Q 010536          260 GKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWR-GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSG  337 (508)
Q Consensus       260 ~~~~~~~~~~l~~~pl~~~~g~~~-~~~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~  337 (508)
                      ...+..++++++.+|++|.+++.. ++.++..|+++++.+ +++..+++.++++++|++.++|+++..+++.        
T Consensus       217 ~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~--------  288 (536)
T 3ni2_A          217 NLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKS--------  288 (536)
T ss_dssp             SSCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTC--------
T ss_pred             cccCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhC--------
Confidence            125678999999999999999964 778999999999987 4999999999999999999999999988641        


Q ss_pred             ChhHHHHHHHHHHHHhhhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhc-CCceeeecc
Q 010536          338 GALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYG  416 (508)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~-~~~v~~~YG  416 (508)
                                                   +..+..++        +++|.+++||+++++++.+++++.+ +..+++.||
T Consensus       289 -----------------------------~~~~~~~l--------~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~YG  331 (536)
T 3ni2_A          289 -----------------------------PDLDKHDL--------SSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYG  331 (536)
T ss_dssp             -----------------------------SCGGGSCC--------TTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEEE
T ss_pred             -----------------------------cccccCCC--------ccceEEEECCCCCCHHHHHHHHHHCCCCCcccccc
Confidence                                         11111222        3899999999999999999999998 899999999


Q ss_pred             cccCCcceeecc----CCCCcccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccc-c
Q 010536          417 LTESCSGCFTSL----ADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-V  491 (508)
Q Consensus       417 ~TE~~~~~~~~~----~~~~~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~-~  491 (508)
                      +||++++++...    .......+++|+|+++++++|+|.+++..++.  |+.|||+|+|++++.||+++++.+.+.| .
T Consensus       332 ~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~--g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~  409 (536)
T 3ni2_A          332 MTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPR--NQPGEICIRGDQIMKGYLNDPEATSRTIDK  409 (536)
T ss_dssp             CGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBCCT--TCCEEEEEESTTSCSEETTCHHHHHHHBCT
T ss_pred             ccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCCCC--CCccEEEEeCcccchhhcCChhHHHhhccC
Confidence            999998766542    12233458999999999999999444555554  5999999999999999999999999999 7


Q ss_pred             CCccccCcEEEEcCCCC
Q 010536          492 DGWFHTGDIGEWQPMEL  508 (508)
Q Consensus       492 ~gw~~TGDlg~~d~dG~  508 (508)
                      +|||+|||+|++|+||+
T Consensus       410 ~g~~~TGDl~~~~~dG~  426 (536)
T 3ni2_A          410 EGWLHTGDIGYIDDDDE  426 (536)
T ss_dssp             TSCEEEEEEEEECTTSC
T ss_pred             CCceEcccEEEEcCCce
Confidence            89999999999999995

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*

Probab=100.00  E-value=5.9e-60  Score=490.45  Aligned_cols=396  Identities=23%  Similarity=0.327  Sum_probs=327.8

Q ss_pred             CCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHHH
Q 010536           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (508)
Q Consensus        42 ~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~lA  121 (508)
                      ..++.++|+++++++|+++|+++.   +.  +..+.+||+||.++++++|++|+++|+++||+|+++++|+++++++++|
T Consensus        17 ~~~l~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA   91 (541)
T 1v25_A           17 ELNLWDFLERAAALFGRKEVVSRL---HT--GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFA   91 (541)
T ss_dssp             CCCTHHHHHHHHHHSTTCEEEEEC---TT--SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhCCCceEEEEe---cC--CCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence            468999999999999999999864   22  2237899999999999999999999999999999999999999999999


Q ss_pred             HHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCceeeeH
Q 010536          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW  201 (508)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (508)
                      |+++|++++|++|.++.+++.++++.++++++|++......+..... ..+.++.++.++....          .....+
T Consensus        92 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----------~~~~~~  160 (541)
T 1v25_A           92 VPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRG-ELKTVQHFVVMDEKAP----------EGYLAY  160 (541)
T ss_dssp             HHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGG-GCSSCCEEEESSSCCC----------TTCEEH
T ss_pred             HHhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHh-hCCCccEEEEecCCCC----------cccccH
Confidence            99999999999999999999999999999999999877665544332 2234555665543321          012356


Q ss_pred             HHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhh--hhhhhhccccCCCCcEEEEecChHHHH
Q 010536          202 EEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSV--DQMFVVTGKVCSEEDTYFSFLPLAHIY  279 (508)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~pl~~~~  279 (508)
                      +++......   .....++++++|+|||||||.||||.++|+++.......  ...+     .+..+|++++.+|++|.+
T Consensus       161 ~~~~~~~~~---~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~h~~  232 (541)
T 1v25_A          161 EEALGEEAD---PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGT-----ALSEKDVVLPVVPMFHVN  232 (541)
T ss_dssp             HHHCCSCCC---CCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTT-----CCCTTCEEEECSCTTSHH
T ss_pred             HHHhhccCC---cccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccc-----cCCCCCEEEEeccchhhh
Confidence            665433311   134567899999999999999999999999998776552  2222     677899999999999999


Q ss_pred             HHHHHHHHHHcCcEEEEec--CCHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhh
Q 010536          280 DQIIETHCIHKGCSIGFWR--GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMK  357 (508)
Q Consensus       280 g~~~~~~~l~~G~~~~~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (508)
                      ++...+.+++.|+++++.+  +++..+++.++++++|+++++|+++..|++.......                      
T Consensus       233 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~----------------------  290 (541)
T 1v25_A          233 AWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGH----------------------  290 (541)
T ss_dssp             HHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTC----------------------
T ss_pred             HHHHHHHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCC----------------------
Confidence            9877788999999999986  3999999999999999999999999998764332110                      


Q ss_pred             cCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCcceeeccCCC------
Q 010536          358 KGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADV------  431 (508)
Q Consensus       358 ~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~------  431 (508)
                                     ++        +++|.+++||+++++++.+++ +.+|+.+++.||+||++.+++......      
T Consensus       291 ---------------~l--------~~lr~i~~gG~~l~~~~~~~~-~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~  346 (541)
T 1v25_A          291 ---------------RL--------KTLRRLVVGGSAAPRSLIARF-ERMGVEVRQGYGLTETSPVVVQNFVKSHLESLS  346 (541)
T ss_dssp             ---------------CC--------SSCCEEEECSSCCCHHHHHHH-HHTTCEEEEEEECGGGSSEEEECCCCGGGTTSC
T ss_pred             ---------------cc--------hhccEEEECCCCCCHHHHHHH-HHhCCceeecccccccccceecccccccccccC
Confidence                           01        389999999999999999999 567999999999999998777654331      


Q ss_pred             ----CcccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCccccccccc-CCccccCcEEEEcCC
Q 010536          432 ----FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV-DGWFHTGDIGEWQPM  506 (508)
Q Consensus       432 ----~~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~~-~gw~~TGDlg~~d~d  506 (508)
                          ....+++|+|+|+++++|+| +++..++.+.++.|||+|+||+++.||+++|+.+.+.|. +|||+|||+|++|+|
T Consensus       347 ~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~~~~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDlg~~d~d  425 (541)
T 1v25_A          347 EEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEE  425 (541)
T ss_dssp             HHHHHHHHTSCBEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECTT
T ss_pred             ccccccccCCCCCcCCCcEEEEEC-CCCCCCCCCCCcceEEEEeCcchhccccCChhhhhhhccCCCCeEcCCEEEEcCC
Confidence                02347899999999999999 888877754457899999999999999999999999995 999999999999999


Q ss_pred             CC
Q 010536          507 EL  508 (508)
Q Consensus       507 G~  508 (508)
                      |+
T Consensus       426 G~  427 (541)
T 1v25_A          426 GY  427 (541)
T ss_dssp             CC
T ss_pred             ce
Confidence            95

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A

Probab=100.00  E-value=1.1e-60  Score=497.21  Aligned_cols=409  Identities=22%  Similarity=0.329  Sum_probs=328.2

Q ss_pred             CCCCCCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhH
Q 010536           36 LESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEW  115 (508)
Q Consensus        36 ~~~~~~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~  115 (508)
                      +..+....|+.++|.++++++|+++|++...  ++..+  +.+||+||.++++++|++|+++|+++||+|+++++|++++
T Consensus        13 ~~~~~~~~tl~~~l~~~a~~~p~~~a~~a~~--~~~~~--~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~   88 (550)
T 3rix_A           13 PFYPLEDGTAGEQLHKAMKRYALVPGTIAFT--DAHIE--VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQF   88 (550)
T ss_dssp             CSSCCCCSCHHHHHHHHHHHHHTSTTCEEEE--ETTTC--CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTT
T ss_pred             CCCCcccCCHHHHHHHHHHhCCCCceEEEee--ecCCC--cEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccH
Confidence            3445566899999999999999999986220  11111  6899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcC
Q 010536          116 IIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELG  195 (508)
Q Consensus       116 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (508)
                      +++++||+++|++++|++|.++.+++.++++.++++++|++......+..... ..+.+..++.++.....         
T Consensus        89 ~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---------  158 (550)
T 3rix_A           89 FMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQK-KLPIIQKIIIMDSKTDY---------  158 (550)
T ss_dssp             HHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHH-HCTTCCEEEETTCSSCB---------
T ss_pred             HHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHh-hCCCcceEEEEcCCccc---------
Confidence            99999999999999999999999999999999999999999887766654432 22445666665543211         


Q ss_pred             ceeeeHHHHHhcCCC------CCCC-CCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcE
Q 010536          196 VSCFSWEEFLQLGTL------DCEL-PPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDT  268 (508)
Q Consensus       196 ~~~~~~~~~~~~~~~------~~~~-~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (508)
                      .....+.++......      ...+ ....++++++|+|||||||.||||.++|+++...+......+  .......+++
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~--~~~~~~~~~~  236 (550)
T 3rix_A          159 QGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPI--FGNQIIPDTA  236 (550)
T ss_dssp             TTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTT--TSCCCCTTCE
T ss_pred             cCcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhh--ccccCCCCcE
Confidence            123455555543211      1111 122457899999999999999999999999998877655432  1125678999


Q ss_pred             EEEecChHHHHHHHHHHHHHHcCcEEEEec-CCHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHH
Q 010536          269 YFSFLPLAHIYDQIIETHCIHKGCSIGFWR-GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEF  347 (508)
Q Consensus       269 ~l~~~pl~~~~g~~~~~~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~  347 (508)
                      +++.+|++|.+++...+.+++.|+++++.+ +++..+++.++++++|+++++|+++..+++.                  
T Consensus       237 ~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~------------------  298 (550)
T 3rix_A          237 ILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKS------------------  298 (550)
T ss_dssp             EEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHC------------------
T ss_pred             EEEechHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhC------------------
Confidence            999999999999988888999999999986 4999999999999999999999999998652                  


Q ss_pred             HHHHHhhhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCc-eeeecccccCCcceee
Q 010536          348 AYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAP-LTQGYGLTESCSGCFT  426 (508)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~-v~~~YG~TE~~~~~~~  426 (508)
                                         ...+..++        +++|.+++||+++++++.+++.+.++.. +++.||+||+++.++.
T Consensus       299 -------------------~~~~~~~l--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~  351 (550)
T 3rix_A          299 -------------------TLIDKYDL--------SNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILI  351 (550)
T ss_dssp             -------------------CGGGGSCC--------TTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEE
T ss_pred             -------------------ccccccCc--------ccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCccccceec
Confidence                               11112222        3899999999999999999999999875 9999999999988776


Q ss_pred             ccCCCCcccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccc-cCCccccCcEEEEcC
Q 010536          427 SLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGDIGEWQP  505 (508)
Q Consensus       427 ~~~~~~~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~-~~gw~~TGDlg~~d~  505 (508)
                      ...... ..+++|+|+|+++++|+|.+++..++  .|+.|||+|+|++++.||+++++.+.+.| .+|||+|||+|++|+
T Consensus       352 ~~~~~~-~~~~vG~~~~~~~~~i~d~~~~~~~~--~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~  428 (550)
T 3rix_A          352 TPEGDD-KPGAVGKVVPFFEAKVVDLDTGKTLG--VNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDE  428 (550)
T ss_dssp             CCTTCC-CTTEEEEECTTCEEEEECTTTCCBCC--TTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECT
T ss_pred             CCCCCC-CCCCcccccCCcEEEEEeCCCCcCCC--CCCCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEeC
Confidence            655443 44899999999999999944455444  45999999999999999999999999999 799999999999999


Q ss_pred             CCC
Q 010536          506 MEL  508 (508)
Q Consensus       506 dG~  508 (508)
                      ||+
T Consensus       429 dG~  431 (550)
T 3rix_A          429 DEH  431 (550)
T ss_dssp             TCC
T ss_pred             Cce
Confidence            995

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*

Probab=100.00  E-value=3.4e-60  Score=492.55  Aligned_cols=393  Identities=15%  Similarity=0.184  Sum_probs=326.4

Q ss_pred             CCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHHH
Q 010536           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (508)
Q Consensus        42 ~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~lA  121 (508)
                      ..++.++|+++++++|+++|+++.   +      +.+||+||.++++++|++|.++|+++||+|+++++|+++++++++|
T Consensus        29 ~~tl~~~l~~~a~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA   99 (544)
T 3o83_A           29 DQPLTRILTVGVQSHPHSLAIICG---E------RQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFA   99 (544)
T ss_dssp             CCCTTHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhCCCceEEEcC---C------CceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHH
Confidence            478999999999999999999865   3      6899999999999999999999999999999999999999999999


Q ss_pred             HHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChh----hHhhcCccCCCCccEEEEecCCCchhhhhhhhcCce
Q 010536          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP----SILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS  197 (508)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (508)
                      |+++|++++|+++.++.+++.++++.++++++|++.....    ...............++.......            
T Consensus       100 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  167 (544)
T 3o83_A          100 LLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQAT------------  167 (544)
T ss_dssp             HHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCTT------------
T ss_pred             HHHhCcEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCCcc------------
Confidence            9999999999999999999999999999999999886531    111112222234455555543311            


Q ss_pred             eeeHHHHHhcCCC-CCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChH
Q 010536          198 CFSWEEFLQLGTL-DCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLA  276 (508)
Q Consensus       198 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~  276 (508)
                      ...+.++...... ........++++++|+|||||||.||||.++|+++...+......+     .+..+|++++.+|++
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~  242 (544)
T 3o83_A          168 DFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEIC-----GLNSNTRLLCALPAP  242 (544)
T ss_dssp             SEEHHHHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTT
T ss_pred             ccchhhhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHh-----CCCCCCeEEEecCcc
Confidence            1234444443321 2222455789999999999999999999999999999999888777     788999999999999


Q ss_pred             HHHHHHH--HHHHHHcCcEEEEecC-CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHh
Q 010536          277 HIYDQII--ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKL  353 (508)
Q Consensus       277 ~~~g~~~--~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (508)
                      |.+++..  ++.++..|+++++.+. ++..+++.++++++|+++++|+++..+++...                      
T Consensus       243 h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~----------------------  300 (544)
T 3o83_A          243 HNFMLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAA----------------------  300 (544)
T ss_dssp             SHHHHHSSHHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHT----------------------
T ss_pred             eEeecchHHHHHHHHcCCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchh----------------------
Confidence            9999874  7789999999999874 99999999999999999999999999876321                      


Q ss_pred             hhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCcceeeccCCCCc
Q 010536          354 GNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFN  433 (508)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~  433 (508)
                                     ....++        +++|.+++||+++++++.+++.+.+|..+++.||+||++..+.........
T Consensus       301 ---------------~~~~~~--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~  357 (544)
T 3o83_A          301 ---------------QYKDQI--------QSLKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTRLDDSDEQ  357 (544)
T ss_dssp             ---------------TTHHHH--------TTCCEEEEESSCCCHHHHTHHHHHHCSEEEEEEECTTSCEEECCTTSCHHH
T ss_pred             ---------------hccccC--------CcceEEEEcCCCCCHHHHHHHHHHhCCcEEeeeccccccceeecCCCchhh
Confidence                           112223        389999999999999999999999999999999999987554433333333


Q ss_pred             ccCcccccc-CCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccc-cCCccccCcEEEEcCCCC
Q 010536          434 MIGTVGVPM-TTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGDIGEWQPMEL  508 (508)
Q Consensus       434 ~~~s~G~p~-~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~-~~gw~~TGDlg~~d~dG~  508 (508)
                      ..+++|+|+ ++++++|+| +++..++.|  +.|||+|+||+++.||+++++.+.+.| .+|||+|||+|++|+||+
T Consensus       358 ~~~~~G~p~~~~~~~~i~d-~~~~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~  431 (544)
T 3o83_A          358 IFTTQGRPISSDDEIKIVD-EQYREVPEG--EIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGN  431 (544)
T ss_dssp             HHHCCCEESCTTCEEEEEC-TTSCBCCTT--CCEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECTTSC
T ss_pred             ccCCCceecCCCcEEEEEC-CCCCCCCCC--CeeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEcCCCC
Confidence            347899996 899999999 888877655  899999999999999999999999999 799999999999999985

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A

Probab=100.00  E-value=1.4e-60  Score=492.33  Aligned_cols=391  Identities=22%  Similarity=0.304  Sum_probs=324.0

Q ss_pred             CCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHH
Q 010536           40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM  119 (508)
Q Consensus        40 ~~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~  119 (508)
                      +...|+.++|+++++++|+++|+++.   +..    +.+||+||.++++++|.+|.++|+++||+|+++++|++++++++
T Consensus        13 ~~~~~l~~~l~~~a~~~p~~~A~~~~---~~~----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~   85 (517)
T 3r44_A           13 DKMKNIGWMLRQRATVSPRLQAYVEP---STD----VRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLF   85 (517)
T ss_dssp             GGGGCHHHHHHHHHHHSTTSEEEEEG---GGT----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhCCCCeEEEeC---CcC----ceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHH
Confidence            45689999999999999999999876   332    58999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCceee
Q 010536          120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCF  199 (508)
Q Consensus       120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (508)
                      +||+++|++++||+|.++.+++.++++.++++++|++......+....... .....++....               ..
T Consensus        86 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~---------------~~  149 (517)
T 3r44_A           86 YGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQA-DPPGTVTDWIG---------------AD  149 (517)
T ss_dssp             HHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSS-SCCTTCCEEEE---------------HH
T ss_pred             HHHHHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhcc-CCccEEEEccC---------------cc
Confidence            999999999999999999999999999999999999987665554332211 11111111100               01


Q ss_pred             eHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHH
Q 010536          200 SWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIY  279 (508)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~  279 (508)
                      .+.+...............++++++|+|||||||.||||.++|+++...+......+     .+..+|++++.+|++|.+
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~  224 (517)
T 3r44_A          150 SLAERLRSAAADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTI-----DVRYRDRLLLPLPMFHVA  224 (517)
T ss_dssp             HHHHHHHHCCCCCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHS-----CCCTTCEEEECSCTTSHH
T ss_pred             cHHHHhhccCcCCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhc-----CCCCCCEEEEeCchHHHH
Confidence            234444433333344456789999999999999999999999999999998887776     788999999999999999


Q ss_pred             HHHHHHHHHHcCcEEEEec-CCHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhc
Q 010536          280 DQIIETHCIHKGCSIGFWR-GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKK  358 (508)
Q Consensus       280 g~~~~~~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (508)
                      ++...+.+++.|+++++.+ +++..+++.++++++|++.++|+++..|.+...                           
T Consensus       225 ~~~~~~~~~~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~---------------------------  277 (517)
T 3r44_A          225 ALTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPE---------------------------  277 (517)
T ss_dssp             HHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHH---------------------------
T ss_pred             HHHHHHHHHhcCeEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcc---------------------------
Confidence            9987666666999998887 499999999999999999999999999865221                           


Q ss_pred             CCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCcceeeccCCC-CcccCc
Q 010536          359 GMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADV-FNMIGT  437 (508)
Q Consensus       359 ~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~-~~~~~s  437 (508)
                                ....++        +++|.+++||+++++++.+++.+. +..+++.||+||+++.++...... ....++
T Consensus       278 ----------~~~~~~--------~~lr~i~~gGe~l~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~  338 (517)
T 3r44_A          278 ----------FAELDA--------PDFRYFITGGAPMPEALIKIYAAK-NIEVVQGYALTESCGGGTLLLSEDALRKAGS  338 (517)
T ss_dssp             ----------HHHCCC--------TTCCEEEECSSCCCHHHHHHHHHT-TCEEEEEEECGGGTTCEEEECGGGTTTTTTC
T ss_pred             ----------cccCCC--------CcccEEEECCCCCCHHHHHHHHhc-CCcEEEeecccccccceeecCCccccccCCC
Confidence                      111112        389999999999999999999987 999999999999988776654433 344589


Q ss_pred             cccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccccCCccccCcEEEEcCCCC
Q 010536          438 VGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQPMEL  508 (508)
Q Consensus       438 ~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDlg~~d~dG~  508 (508)
                      +|+|+++++++|+| +++..++.+   .|||+|+|++++.||+++|+.+.+.|.+|||+|||+|++|+||+
T Consensus       339 ~G~~~~~~~~~i~d-~~~~~~~~g---~GEl~v~g~~v~~GY~~~p~~t~~~f~~g~~~TGDl~~~~~dG~  405 (517)
T 3r44_A          339 AGRATMFTDVAVRG-DDGVIREHG---EGEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDDEGY  405 (517)
T ss_dssp             CBEECTTEEEEEEC-TTSCEESSE---EEEEEEEETTSCSEETTCHHHHHHTEETTEEEEEEEEEECTTSC
T ss_pred             CCcCCCCeEEEEEC-CCCCCCCCC---CeEEEEeCcchhhhhCCChhhhHhhhcCCCEecceeEEEcCCee
Confidence            99999999999999 777766554   79999999999999999999999999999999999999999985

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}

Probab=100.00  E-value=5e-60  Score=493.89  Aligned_cols=400  Identities=18%  Similarity=0.193  Sum_probs=329.2

Q ss_pred             CCCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHH
Q 010536           39 PAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIA  118 (508)
Q Consensus        39 ~~~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~  118 (508)
                      +...+.+.++|+++|+++|+++|+++.   +. .+..+.+||+||.++++++|++|+++|+++||+|+++++|+++++++
T Consensus        52 ~~~~n~~~~~l~~~a~~~pd~~Al~~~---~~-~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~  127 (580)
T 3etc_A           52 PENFNFAYDVVDVYARDSPEKLAMIWC---DD-YGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYC  127 (580)
T ss_dssp             CSSCCHHHHTHHHHHHHCTTCEEEEEE---ES-SSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHH
T ss_pred             cccchHHHHHHHHHHhhCCCCEEEEEE---cC-CCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHH
Confidence            345667779999999999999999986   43 23447899999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCCh--hhHhhcCccCCCCc-cEEEEecCCCchhhhhhhhcC
Q 010536          119 MEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKI--PSILSCLPRCCLYL-KTIVSFANVSSSQKKEAEELG  195 (508)
Q Consensus       119 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  195 (508)
                      ++||+++|++++|++|.++.+++.++++.++++++|++.+..  ..+.+.... ++.+ ..++.++...          .
T Consensus       128 ~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----------~  196 (580)
T 3etc_A          128 MLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAE-CGDIPLKKAKVGGDV----------L  196 (580)
T ss_dssp             HHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHH-HCSCCCEEEEESSSC----------C
T ss_pred             HHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhh-CCCcceEEEEeCCcc----------c
Confidence            999999999999999999999999999999999999988754  333332221 1222 3444443221          1


Q ss_pred             ceeeeHHHHHhcCCCCCC-C---CCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEE
Q 010536          196 VSCFSWEEFLQLGTLDCE-L---PPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFS  271 (508)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  271 (508)
                      ..+.++.+.......... +   ....++++++|+|||||||.||+|.++|.+++..+......+     .+..++++++
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~  271 (580)
T 3etc_A          197 EGWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQ-----NVEDDGLHYT  271 (580)
T ss_dssp             TTCEEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTS-----CCCTTCEEEE
T ss_pred             cccccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhh-----CCCCCceEEE
Confidence            234567766655422111 1   245789999999999999999999999999888776644433     7788999999


Q ss_pred             ecChHHHHHHHH-HHHHHHcCcEEEEec---CCHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHH
Q 010536          272 FLPLAHIYDQII-ETHCIHKGCSIGFWR---GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEF  347 (508)
Q Consensus       272 ~~pl~~~~g~~~-~~~~l~~G~~~~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~  347 (508)
                      ..|+.|..+... ++.++..|+++++.+   +++..+++.++++++|+++++|++++.|++.                  
T Consensus       272 ~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~------------------  333 (580)
T 3etc_A          272 VADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKE------------------  333 (580)
T ss_dssp             CCCTTSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTS------------------
T ss_pred             eCChHHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhc------------------
Confidence            999999888774 778899999998873   4899999999999999999999999988541                  


Q ss_pred             HHHHHhhhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCcceeec
Q 010536          348 AYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTS  427 (508)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~  427 (508)
                                          .....++        ++||.+++||+++++++.++|.+.+|+.+++.||+||+++.++..
T Consensus       334 --------------------~~~~~~l--------~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~  385 (580)
T 3etc_A          334 --------------------DLSHYNF--------STLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIATF  385 (580)
T ss_dssp             --------------------CC---CC--------TTCCEEEECSSCCCHHHHHHHHHHHSCCCEEEECCTTSSCCEECC
T ss_pred             --------------------ccccCCC--------ccceEEEEccCCCCHHHHHHHHHHhCCeEecccccccccceeecC
Confidence                                1111222        389999999999999999999998999999999999998766554


Q ss_pred             cCCCCcccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEec-----CcccccccCCcccccccccCCccccCcEEE
Q 010536          428 LADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRG-----NTLFSGYYKRPDLTEEVIVDGWFHTGDIGE  502 (508)
Q Consensus       428 ~~~~~~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g-----~~v~~gY~~~~~~~~~~~~~gw~~TGDlg~  502 (508)
                      ... ....+++|+|+|+++++|+| ++|+.++.|  +.|||+|+|     +.++.||+++|+.+.+.|.+|||+|||+|+
T Consensus       386 ~~~-~~~~~~~G~p~~~~~v~ivd-~~g~~~~~g--~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~~gwy~TGDlg~  461 (580)
T 3etc_A          386 PWM-EPKPGSIGKPTPGYKIELMD-RDGRLCEVG--EEGEIVINTMEGKPVGLFVHYGKDPERTEETWHDGYYHTGDMAW  461 (580)
T ss_dssp             TTS-CCCTTCCBEECTTCEEEEEC-TTSCBCCTT--CCEEEEEECTTCCCTTCCCEETTCHHHHHHHEETTEEEEEEEEE
T ss_pred             CCC-CCCCCccccCCCCCEEEEEC-CCCCCCCCC--CceEEEEecCCCCCCeeeccccCCHhHHHhhcCCCEEecCcEEE
Confidence            433 34458999999999999999 888877655  899999997     789999999999999999999999999999


Q ss_pred             EcCCCC
Q 010536          503 WQPMEL  508 (508)
Q Consensus       503 ~d~dG~  508 (508)
                      +|+||+
T Consensus       462 ~d~dG~  467 (580)
T 3etc_A          462 MDEDGY  467 (580)
T ss_dssp             ECTTSC
T ss_pred             ECCCCc
Confidence            999996

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A

Probab=100.00  E-value=3e-60  Score=492.49  Aligned_cols=390  Identities=18%  Similarity=0.196  Sum_probs=318.2

Q ss_pred             CCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHHH
Q 010536           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (508)
Q Consensus        42 ~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~lA  121 (508)
                      ..++.++|+++++++|+++|+++.   +      +.+||+||.++++++|++|.++|+++||+|+++++|+++++++++|
T Consensus        24 ~~tl~~~l~~~a~~~p~~~A~~~~---~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA   94 (539)
T 1mdb_A           24 GETFGDLLRDRAAKYGDRIAITCG---N------THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFA   94 (539)
T ss_dssp             SCCHHHHHHHHHHHHTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHCCCCEEEEeC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence            478999999999999999999865   3      6899999999999999999999999999999999999999999999


Q ss_pred             HHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChh----hHhhcCccCCCCccEEEEecCCCchhhhhhhhcCce
Q 010536          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP----SILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS  197 (508)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (508)
                      |+++|++++|++|.++.+++.++++.++++++|+++....    ..........+.++.++..+....            
T Consensus        95 ~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  162 (539)
T 1mdb_A           95 LFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEE------------  162 (539)
T ss_dssp             HHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCTT------------
T ss_pred             HHHcCeEEecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCccc------------
Confidence            9999999999999999999999999999999999875321    111111111233444444332110            


Q ss_pred             eeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHH
Q 010536          198 CFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAH  277 (508)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~  277 (508)
                         +.++..............++++++|+|||||||.||||.++|+++...+......+     .+..++++++.+|++|
T Consensus       163 ---~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~h  234 (539)
T 1mdb_A          163 ---FLPLEDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-----WLDHSTVYLAALPMAH  234 (539)
T ss_dssp             ---SEEGGGCCCCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECSCTTS
T ss_pred             ---hhhhhhccccccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhh-----CCCCCCEEEEeecccc
Confidence               11111111111122345678999999999999999999999999999988877766     7789999999999999


Q ss_pred             HHHHHH--HHHHHHcCcEEEEecC-CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhh
Q 010536          278 IYDQII--ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLG  354 (508)
Q Consensus       278 ~~g~~~--~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (508)
                      .+++..  ++.+++.|+++++.+. ++..+++.++++++|+++++|+++..+++......                    
T Consensus       235 ~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~--------------------  294 (539)
T 1mdb_A          235 NYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRR--------------------  294 (539)
T ss_dssp             HHHHHSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCC--------------------
T ss_pred             cchhhHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccC--------------------
Confidence            999874  7889999999999874 99999999999999999999999999876432110                    


Q ss_pred             hhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCcceeeccCCCCcc
Q 010536          355 NMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNM  434 (508)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~  434 (508)
                                       .++        ++||.+++||+++++++.+++++.+|..+++.||+||++..+..........
T Consensus       295 -----------------~~l--------~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~  349 (539)
T 1mdb_A          295 -----------------DDL--------SSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEII  349 (539)
T ss_dssp             -----------------CCC--------TTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCTTSCHHHH
T ss_pred             -----------------CCc--------cceeEEEEcCCCCCHHHHHHHHHHhCCcEEEEEcCCCCcccccCCCCcHHhc
Confidence                             011        3899999999999999999999989999999999999654333211111223


Q ss_pred             cCccccccCC-eEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccc-cCCccccCcEEEEcCCCC
Q 010536          435 IGTVGVPMTT-VEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGDIGEWQPMEL  508 (508)
Q Consensus       435 ~~s~G~p~~~-~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~-~~gw~~TGDlg~~d~dG~  508 (508)
                      .+++|+|+++ .+++|+| +++..++.|  +.|||+|+||+++.||+++++.+.+.| .+|||+|||+|++|+||+
T Consensus       350 ~~~~G~p~~~~~~~~i~d-~~~~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~  422 (539)
T 1mdb_A          350 VNTQGKPMSPYDESRVWD-DHDRDVKPG--ETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGY  422 (539)
T ss_dssp             HHCCCEESSTTCEEEEEC-TTSCBCCTT--CCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSC
T ss_pred             CCCCCcccCCCceEEEEC-CCCCCCcCC--CcceEEeeCcccchhhcCChhhhhhhccCCCCeecCceEEECCCCc
Confidence            4789999976 5899999 888776655  899999999999999999999999999 699999999999999995

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*

Probab=100.00  E-value=3.6e-59  Score=485.02  Aligned_cols=414  Identities=22%  Similarity=0.313  Sum_probs=327.9

Q ss_pred             CCcccccccccCCCCCCCCCCCCHHH-HHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCC
Q 010536           22 GGPVYRCIYAKDGLLESPAGLESPWQ-FFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVN  100 (508)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~ti~~-~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~  100 (508)
                      .+.+|++..+....    +...++.+ ++.++++++ +++|+++.   +..    +.+||+||.++++++|.+|.+.|++
T Consensus         8 ~~~~~~~~~~~~~~----p~~~~l~~~~l~~~~~~~-~~~A~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~   75 (548)
T 2d1s_A            8 ENIVVGPKPFYPIE----EGSAGTQLRKYMERYAKL-GAIAFTNA---VTG----VDYSYAEYLEKSCCLGKALQNYGLV   75 (548)
T ss_dssp             TTSEECCCCSSCCC----SSCHHHHHHHHHHHHHHH-TCEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHHTCC
T ss_pred             cceEecCCCCCCCC----CCcCcHHHHHHHhhhccc-CCceEEEc---CCC----CEeeHHHHHHHHHHHHHHHHHcCCC
Confidence            34556665533222    22358999 899999999 99999864   221    5799999999999999999999999


Q ss_pred             CCCEEEEEcCCcHhHHHHHHHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEe
Q 010536          101 PGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSF  180 (508)
Q Consensus       101 ~gd~Vai~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (508)
                      +||+|+++++|+++++++++||+++|++++|++|.++.+++.++++.++++++|++......+...... .+....++.+
T Consensus        76 ~gd~V~i~~~n~~e~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-~~~~~~~~~~  154 (548)
T 2d1s_A           76 VDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKT-VTTIKTIVIL  154 (548)
T ss_dssp             TTCEEEEECSSCTTTHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHH-STTCCEEEET
T ss_pred             CCCEEEEEeCCchhHHHHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcC-CCCCCEEEEe
Confidence            999999999999999999999999999999999999999999999999999999999877665443211 1223445544


Q ss_pred             cCCCchhhhhhhhcCceeeeHHHHHhcCCCC-CCCCCC------CCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhh
Q 010536          181 ANVSSSQKKEAEELGVSCFSWEEFLQLGTLD-CELPPK------KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVD  253 (508)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~  253 (508)
                      +....         ......++++....... ......      ..+++++|+|||||||.||||.++|+++...+....
T Consensus       155 ~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~  225 (548)
T 2d1s_A          155 DSKVD---------YRGYQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHAR  225 (548)
T ss_dssp             TCSSC---------BTTBCBHHHHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHT
T ss_pred             CCccc---------ccccccHHHHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhh
Confidence            33210         00123466665543111 111112      238999999999999999999999999998887765


Q ss_pred             hhhhhccccCCCCcEEEEecChHHHHHHHH-HHHHHHcCcEEEEec-CCHHhHHHHhhhhcCeEEEecchHHHHHHHHHH
Q 010536          254 QMFVVTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWR-GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGIS  331 (508)
Q Consensus       254 ~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~-~~~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~  331 (508)
                      ..+.  ...+..+|++++.+|++|.+++.. ++.++ .|+++++.+ +++..+++.++++++|+++++|+++..|++.  
T Consensus       226 ~~~~--~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~--  300 (548)
T 2d1s_A          226 DPIY--GNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKS--  300 (548)
T ss_dssp             CTTT--SCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHC--
T ss_pred             chhh--ccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhC--
Confidence            5410  126678999999999999999876 55666 999999886 5999999999999999999999999998641  


Q ss_pred             HHhhcCChhHHHHHHHHHHHHhhhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhc-CCc
Q 010536          332 NKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAP  410 (508)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~-~~~  410 (508)
                                                         +..+..++        +++|.+++||+++++++.+++.+.+ +..
T Consensus       301 -----------------------------------~~~~~~~l--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~~  337 (548)
T 2d1s_A          301 -----------------------------------ELLNKYDL--------SNLVEIASGGAPLSKEVGEAVARRFNLPG  337 (548)
T ss_dssp             -----------------------------------SCGGGSCC--------TTCCEEEECSSCCCHHHHHHHHHHTTCSC
T ss_pred             -----------------------------------cccccccc--------cceeEEEEcCccCCHHHHHHHHHHcCCCc
Confidence                                               10111122        3899999999999999999999998 688


Q ss_pred             eeeecccccCCcceeeccCCCCcccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccc
Q 010536          411 LTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI  490 (508)
Q Consensus       411 v~~~YG~TE~~~~~~~~~~~~~~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~  490 (508)
                      +++.||+||++..++..... ....+++|+|+|+++++|+|.+++..++  +|+.|||+|+|++++.||+++++.+.+.|
T Consensus       338 i~~~YG~TE~~~~~~~~~~~-~~~~~~~G~~~~~~~~~i~d~~~~~~~~--~g~~GEl~v~g~~v~~GY~~~~~~t~~~f  414 (548)
T 2d1s_A          338 VRQGYGLTETTSAIIITPEG-DDKPGASGKVVPLFKAKVIDLDTKKSLG--PNRRGEVCVKGPMLMKGYVNNPEATKELI  414 (548)
T ss_dssp             CEEEEECGGGSSEEEECCTT-CCCTTCCBEECTTCEEEEECTTTCCBCC--TTCCEEEEEESTTSCSEETTCHHHHHHHB
T ss_pred             eeeccccccccceeeecCcc-cCCCCCCCccCCCceEEEEeCCcCccCC--CCCCeEEEECCHHHhhhhcCChHHhhhcc
Confidence            99999999998877664333 2344899999999999999944555554  45899999999999999999999999999


Q ss_pred             -cCCccccCcEEEEcCCCC
Q 010536          491 -VDGWFHTGDIGEWQPMEL  508 (508)
Q Consensus       491 -~~gw~~TGDlg~~d~dG~  508 (508)
                       .+|||+|||+|++|+||+
T Consensus       415 ~~~g~~~TGDl~~~~~dG~  433 (548)
T 2d1s_A          415 DEEGWLHTGDIGYYDEEKH  433 (548)
T ss_dssp             CTTSCEEEEEEEEECTTCC
T ss_pred             cCCcEEEccCEEEEcCCCe
Confidence             689999999999999995

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0

Probab=100.00  E-value=6.2e-59  Score=479.86  Aligned_cols=384  Identities=21%  Similarity=0.271  Sum_probs=319.8

Q ss_pred             CCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHH
Q 010536           41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME  120 (508)
Q Consensus        41 ~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~l  120 (508)
                      ...|+.++|+++++++|+++|+++.   +      +.+||+||.++++++|++|.++|+++||+|+++++|+++++++++
T Consensus         4 ~~~tl~~~l~~~a~~~pd~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~l   74 (509)
T 3ivr_A            4 HDFTLADVYRRNAALFPDRTAFMVD---G------VRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIG   74 (509)
T ss_dssp             TCCCHHHHHHHHHHHSTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHHCCCceEEEEC---C------cEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Confidence            4689999999999999999999875   3      689999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCceeee
Q 010536          121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFS  200 (508)
Q Consensus       121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (508)
                      ||+++|++++||+|.++.+++.++++.++++++|++......+..... .......++.++....              .
T Consensus        75 A~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--------------~  139 (509)
T 3ivr_A           75 AVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLP-SLGGVKKAYAIGDGSG--------------P  139 (509)
T ss_dssp             HHHHTTCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGG-GCSSCCEEEESSCCCS--------------S
T ss_pred             HHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhc-ccCCceEEEEcCCCCc--------------C
Confidence            999999999999999999999999999999999999987776444432 2345556666543211              1


Q ss_pred             HHHHHh-cCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHH
Q 010536          201 WEEFLQ-LGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIY  279 (508)
Q Consensus       201 ~~~~~~-~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~  279 (508)
                      +.++.. ............++++++|+|||||||.||||.++|+++...+......+     .+..+|++++.+|++|.+
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~  214 (509)
T 3ivr_A          140 FAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAW-----RLTEADVNLGMLPLFHVT  214 (509)
T ss_dssp             CEEGGGTCCCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTTSHH
T ss_pred             hhhHhhccCCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhh-----CCCCCcEEEEeCCCcchh
Confidence            112222 11222333456789999999999999999999999999999998887776     788999999999999999


Q ss_pred             HHHHHHHHH-HcCcEEEEecCCHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhc
Q 010536          280 DQIIETHCI-HKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKK  358 (508)
Q Consensus       280 g~~~~~~~l-~~G~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (508)
                      ++...+.++ ..|+.+++..+++..+++.++++++|+++++|+++..+++..                            
T Consensus       215 g~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~----------------------------  266 (509)
T 3ivr_A          215 GLGLMLTLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQA----------------------------  266 (509)
T ss_dssp             HHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHC----------------------------
T ss_pred             HHHHHHHHHHhCCcEEEecccCHHHHHHHHHHHCCcEEEecHHHHHHHHhcc----------------------------
Confidence            998766644 455555555569999999999999999999999999987531                            


Q ss_pred             CCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhc-CCceeeecccccCCcceeeccCCCCcccCc
Q 010536          359 GMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESCSGCFTSLADVFNMIGT  437 (508)
Q Consensus       359 ~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~~~~~~~s  437 (508)
                                 ...++        +++|.++.+|++   ++.+.+.+.+ ++.+++.||+||++++++........  .+
T Consensus       267 -----------~~~~l--------~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~--~~  322 (509)
T 3ivr_A          267 -----------APAQL--------ASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGLSTFAPYRDRP--KS  322 (509)
T ss_dssp             -----------CGGGG--------TTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGGGTEEEEEEEGGGST--TS
T ss_pred             -----------cccch--------hhhheecccCCh---HHHHHHHHhcCCCeEEcccCccccccccccCccccCC--Cc
Confidence                       00111        278999999987   8888888888 89999999999999877765543322  46


Q ss_pred             cccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccccCCccccCcEEEEcCCCC
Q 010536          438 VGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQPMEL  508 (508)
Q Consensus       438 ~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDlg~~d~dG~  508 (508)
                      +|+|+++++++|+| +++..++.|  +.|||+|+|++++.||+++++.+.+.|.+|||+|||+|++|+||+
T Consensus       323 ~G~p~~~~~~~i~d-~~~~~~~~g--~~GEl~v~g~~~~~gY~~~~~~t~~~f~~g~~~TGDl~~~~~dG~  390 (509)
T 3ivr_A          323 AGRPLFWRTVAVVD-AEDRPLPPG--EVGEIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDMGRFDADGY  390 (509)
T ss_dssp             CCEECTTCEEEEEC-TTSCBCCTT--CCEEEEEESTTSCCEETTCHHHHHHHTGGGSEEEEEEEEECTTSC
T ss_pred             ccccCCCcEEEEEC-CCCCCCCCC--CceEEEEecCCccccccCCHHHhHHHhhcCCcccccEEEECCCce
Confidence            99999999999999 888766655  899999999999999999999999999999999999999999985

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*

Probab=100.00  E-value=1.1e-58  Score=483.20  Aligned_cols=397  Identities=17%  Similarity=0.234  Sum_probs=327.4

Q ss_pred             CCCCCHHHHHHHHHHh-----CCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhC-CCCCCCEEEEEcCCcH
Q 010536           40 AGLESPWQFFCDSAKR-----IPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSR-GVNPGDRCGIYGSNCP  113 (508)
Q Consensus        40 ~~~~ti~~~l~~~a~~-----~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~-gv~~gd~Vai~~~n~~  113 (508)
                      ...+++.++|++++++     +|+++|+++.   +. ++..+.+||+||.++++++|++|.+. |+++||+|+++++|++
T Consensus        35 ~~~~~~~~~l~~~a~~~~a~~~p~~~al~~~---~~-~g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~  110 (570)
T 3c5e_A           35 AKFNFASDVLDHWADMEKAGKRPPSPALWWV---NG-KGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVP  110 (570)
T ss_dssp             SBCCHHHHTHHHHHHHHHTTSSCCCEEEEEE---CS-SSCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCH
T ss_pred             ccccHHHHHHHHHHhhccccCCCCceEEEEE---cC-CCceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCH
Confidence            3456778999999999     9999999986   42 22347899999999999999999999 9999999999999999


Q ss_pred             hHHHHHHHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhh
Q 010536          114 EWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEE  193 (508)
Q Consensus       114 ~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (508)
                      +++++++||+++|++++|++|.++.+++.++++.++++++|++......+..... ..+.++.++.++....        
T Consensus       111 e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--------  181 (570)
T 3c5e_A          111 EWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVAS-ECPSLRIKLLVSEKSC--------  181 (570)
T ss_dssp             HHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGG-GCTTCCEEEEESSSCC--------
T ss_pred             HHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhh-cCCceeEEEEecccCc--------
Confidence            9999999999999999999999999999999999999999999887766644332 2244555665543211        


Q ss_pred             cCceeeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHH--HHhhhhhhhhhccccCCCCcEEEE
Q 010536          194 LGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVA--EVLSVDQMFVVTGKVCSEEDTYFS  271 (508)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~  271 (508)
                        ..+..++++..............++++++|+|||||||.||||.++|+ ++.  ..... ..+     .+..+|++++
T Consensus       182 --~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~-----~~~~~d~~~~  252 (570)
T 3c5e_A          182 --DGWLNFKKLLNEASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWT-----GLQASDIMWT  252 (570)
T ss_dssp             --TTSEEHHHHHHHSCSCCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTT-----SCCTTCEEEE
T ss_pred             --cccccHHHHhhcccccccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhc-----CCCCCceEEE
Confidence              113456666654422223344567999999999999999999999999 544  33332 333     6788999999


Q ss_pred             ecChHHHHHHH-HHHHHHHcCcEEEEec---CCHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHH
Q 010536          272 FLPLAHIYDQI-IETHCIHKGCSIGFWR---GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEF  347 (508)
Q Consensus       272 ~~pl~~~~g~~-~~~~~l~~G~~~~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~  347 (508)
                      .+|++|.+++. .++.++..|+++++.+   +++..+++.++++++|+++++|++++.|++..                 
T Consensus       253 ~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-----------------  315 (570)
T 3c5e_A          253 ISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD-----------------  315 (570)
T ss_dssp             CCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC-----------------
T ss_pred             cCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc-----------------
Confidence            99999999987 4778999999999885   49999999999999999999999999886410                 


Q ss_pred             HHHHHhhhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCcceeec
Q 010536          348 AYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTS  427 (508)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~  427 (508)
                                           ....++        +++|.+++||+++++++.++|.+.+|+.+++.||+||++..++..
T Consensus       316 ---------------------~~~~~~--------~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~  366 (570)
T 3c5e_A          316 ---------------------LSSYKF--------PHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMVS  366 (570)
T ss_dssp             ---------------------TTTCCC--------TTCCEEEEESSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECC
T ss_pred             ---------------------cccccc--------ccceEEEEcCCcCCHHHHHHHHHHhCCchhhccchhhcccceecC
Confidence                                 000011        389999999999999999999998899999999999998765544


Q ss_pred             cCCCCcccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEe-----cCcccccccCCcccccccccCCccccCcEEE
Q 010536          428 LADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLR-----GNTLFSGYYKRPDLTEEVIVDGWFHTGDIGE  502 (508)
Q Consensus       428 ~~~~~~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~-----g~~v~~gY~~~~~~~~~~~~~gw~~TGDlg~  502 (508)
                      ... ....+++|+|+++++++|+| +++..++.|  +.|||+|+     |++++.||+++++.+.+.|.+|||+|||+|+
T Consensus       367 ~~~-~~~~~~vG~p~~~~~v~i~d-~~g~~~~~G--~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f~~~~~~TGDlg~  442 (570)
T 3c5e_A          367 KTM-KIKPGYMGTAASCYDVQIID-DKGNVLPPG--TEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLLGDRGI  442 (570)
T ss_dssp             TTS-CCCTTCCCEECTTCCEEEEC-TTSCBCCTT--CCEEEEEECSSBCCTTCCCEETTCHHHHHHTEETTEEEEEEEEE
T ss_pred             ccc-ccCCCcccccCCCceEEEEC-CCCCCCCCC--CCCeeEEeccCCCCchhhccccCChhHhhhhhcCCccccceeEE
Confidence            332 33458999999999999999 888776655  89999999     9999999999999999999999999999999


Q ss_pred             EcCCCC
Q 010536          503 WQPMEL  508 (508)
Q Consensus       503 ~d~dG~  508 (508)
                      +|+||+
T Consensus       443 ~d~dG~  448 (570)
T 3c5e_A          443 KDEDGY  448 (570)
T ss_dssp             ECTTSC
T ss_pred             EcCCce
Confidence            999995

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A

Probab=100.00  E-value=1.1e-59  Score=482.55  Aligned_cols=394  Identities=16%  Similarity=0.190  Sum_probs=309.4

Q ss_pred             CCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHH
Q 010536           41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME  120 (508)
Q Consensus        41 ~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~l  120 (508)
                      ...++.++|+++++++|+++|+++....++.++.++.+||+||.++++++|++|.++|+ +||+|+++++|+++++++++
T Consensus        22 ~~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~l  100 (480)
T 3t5a_A           22 SVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAFL  100 (480)
T ss_dssp             --CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHHH
T ss_pred             CcccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHHH
Confidence            35799999999999999999999872111334455789999999999999999999996 99999999999999999999


Q ss_pred             HHHHcCCEEEeccC---CCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCC-CccEEEEecCCCchhhhhhhhcCc
Q 010536          121 ACNSQAITYVPLYD---TLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCL-YLKTIVSFANVSSSQKKEAEELGV  196 (508)
Q Consensus       121 A~~~~G~~~v~l~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  196 (508)
                      ||+++|++++||++   .++.+++.++++.++++++|++......+.+....... ....++.++...            
T Consensus       101 A~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  168 (480)
T 3t5a_A          101 GALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDLLD------------  168 (480)
T ss_dssp             HHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGGGSC------------
T ss_pred             HHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEecccc------------
Confidence            99999999999999   78899999999999999999999887776554432111 111233222111            


Q ss_pred             eeeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCC------CcEEE
Q 010536          197 SCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSE------EDTYF  270 (508)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~------~~~~l  270 (508)
                               .............++++++|+|||||||.||||+++|+++...+......+     ....      +++++
T Consensus       169 ---------~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~~~~~~~d~~l  234 (480)
T 3t5a_A          169 ---------LDAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGY-----FADTDGIPPPNSALV  234 (480)
T ss_dssp             ---------TTCC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHH-----CTTTTTCCCTTEEEE
T ss_pred             ---------cccccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHh-----ccccccCCCCCCeEE
Confidence                     011112233445678999999999999999999999999999988877766     4444      89999


Q ss_pred             EecChHHHHHHHH-HHHHHHcCcEEEEec-C----CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHH
Q 010536          271 SFLPLAHIYDQII-ETHCIHKGCSIGFWR-G----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKL  344 (508)
Q Consensus       271 ~~~pl~~~~g~~~-~~~~l~~G~~~~~~~-~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~  344 (508)
                      +.+|++|.+++.. ++.+++.|+++++.+ .    ++..+++.++++++| +..+|+++..++.....            
T Consensus       235 ~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~------------  301 (480)
T 3t5a_A          235 SWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTT------------  301 (480)
T ss_dssp             ECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCC------------
T ss_pred             EeCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcC------------
Confidence            9999999999874 788999999999986 2    899999999999999 88999998887652110            


Q ss_pred             HHHHHHHHhhhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcC------Cceeeecccc
Q 010536          345 FEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG------APLTQGYGLT  418 (508)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~------~~v~~~YG~T  418 (508)
                                           .+.....++        ++||.+++||+++++++.+++.+.++      ..+++.||+|
T Consensus       302 ---------------------~~~~~~~~l--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~T  352 (480)
T 3t5a_A          302 ---------------------DDDMAGRDL--------GNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLA  352 (480)
T ss_dssp             ---------------------TGGGTTCCC--------TTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEET
T ss_pred             ---------------------cccccccch--------hhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhcccccccc
Confidence                                 011111122        38999999999999999999999874      3799999999


Q ss_pred             cCCcceeeccCCC------------------------CcccCccccccCCeEEEEeecCC-CCccCCCCCCCCeEEEecC
Q 010536          419 ESCSGCFTSLADV------------------------FNMIGTVGVPMTTVEARLESVPE-MGYDALSSVPRGEICLRGN  473 (508)
Q Consensus       419 E~~~~~~~~~~~~------------------------~~~~~s~G~p~~~~~~~i~d~~~-~~~~~~~~~~~GEl~v~g~  473 (508)
                      |+++.++......                        ....+++|+|++ ++++|+| ++ +..++.  |+.|||+|+|+
T Consensus       353 E~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~ivd-~~~g~~~~~--g~~GEl~v~g~  428 (480)
T 3t5a_A          353 EATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIVD-SDTCIECPD--GTVGEIWVHGD  428 (480)
T ss_dssp             TTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEEE-TTTTEECCT--TBCEEEEEEST
T ss_pred             ccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEEEEEc-CCCCcCCCC--CCEEEEEEeCC
Confidence            9998877655432                        123368999999 9999999 55 555554  49999999999


Q ss_pred             cccccccCCcccccccc------------cCCccccCcEEEEcCCCC
Q 010536          474 TLFSGYYKRPDLTEEVI------------VDGWFHTGDIGEWQPMEL  508 (508)
Q Consensus       474 ~v~~gY~~~~~~~~~~~------------~~gw~~TGDlg~~d~dG~  508 (508)
                      +++.||+++|+.+.+.|            .+|||+|||+|++| ||+
T Consensus       429 ~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~  474 (480)
T 3t5a_A          429 NVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGK  474 (480)
T ss_dssp             TSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTE
T ss_pred             ccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCE
Confidence            99999999999999988            35699999999997 884

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*

Probab=100.00  E-value=1.8e-58  Score=475.64  Aligned_cols=379  Identities=20%  Similarity=0.270  Sum_probs=307.6

Q ss_pred             CCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHHH
Q 010536           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (508)
Q Consensus        42 ~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~lA  121 (508)
                      +.|+.++|+++++++|+++|+.+.   +..    +.+||+||.++++++|++|.++|+++||+|+++++|+++++++++|
T Consensus         1 M~tl~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA   73 (504)
T 1t5h_X            1 MQTVNEMLRRAATRAPDHCALAVP---ARG----LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILA   73 (504)
T ss_dssp             CCCHHHHHHHHHHHCTTSEEEEET---TTT----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHhCCCceEEEEc---CCC----ceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence            478999999999999999999864   322    6899999999999999999999999999999999999999999999


Q ss_pred             HHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEE--cCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCceee
Q 010536          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFV--QENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCF  199 (508)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (508)
                      |+++|++++|++|.++.+++.++++.++++++|+  +......+.....    ..+ ++.+                   
T Consensus        74 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~----~~~-~~~~-------------------  129 (504)
T 1t5h_X           74 LHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGS----GAR-IIFL-------------------  129 (504)
T ss_dssp             HHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHHCC----CCE-EEEG-------------------
T ss_pred             HHHhCcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhccc----cce-eEEe-------------------
Confidence            9999999999999999999999999999999999  6654443311111    111 2211                   


Q ss_pred             eHHHHHhcC-----CCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccC--CCCcEEEEe
Q 010536          200 SWEEFLQLG-----TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVC--SEEDTYFSF  272 (508)
Q Consensus       200 ~~~~~~~~~-----~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~  272 (508)
                        +++....     ..........++++++|+|||||||.||||.++|+++...+......+     .+  ..++++++.
T Consensus       130 --~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~-----~~~~~~~~~~l~~  202 (504)
T 1t5h_X          130 --GDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV-----GLRHGRHNVVLGL  202 (504)
T ss_dssp             --GGTEETTEECCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTT-----CCCSSTTCEEEEC
T ss_pred             --cchhhcCcccccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhh-----CCCCCCCceEEee
Confidence              1111110     111111345678999999999999999999999999999888776655     45  788999999


Q ss_pred             cChHHHHHHH-HHHHHHHcCcEEEEec-CCHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHH
Q 010536          273 LPLAHIYDQI-IETHCIHKGCSIGFWR-GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYN  350 (508)
Q Consensus       273 ~pl~~~~g~~-~~~~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  350 (508)
                      +|++|.+++. ..+.++..|+++++.+ +++..+++.++++++|+++++|++++.|++......                
T Consensus       203 ~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~----------------  266 (504)
T 1t5h_X          203 MPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAG----------------  266 (504)
T ss_dssp             SCTTSHHHHTTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTT----------------
T ss_pred             cchhhcchHHHHHHHHHHcCceEEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhcccc----------------
Confidence            9999999985 5788999999999987 499999999999999999999999999875321000                


Q ss_pred             HHhhhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCcceeeccCC
Q 010536          351 YKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLAD  430 (508)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~  430 (508)
                                         ...++        +++|.+++||+++++++.+++++.++..+++.||+||++ .+....  
T Consensus       267 -------------------~~~~l--------~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~-~~~~~~--  316 (504)
T 1t5h_X          267 -------------------SSLKL--------DSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAM-NSLYMR--  316 (504)
T ss_dssp             -------------------CCCCC--------TTCCEEEECCTTCCHHHHHHHHHHCCSEEEEEEEETTTE-EEEEEE--
T ss_pred             -------------------ccccC--------ccccEEEEcCCcCCHHHHHHHHHhcCcceeeeecccccc-cccccc--
Confidence                               00011        389999999999999999999999999999999999983 332222  


Q ss_pred             CCcccCccccccCCeEEEEeecCCC---CccCCCCCCCCeEEEe-cCcccccccCCcccccccccCCccccCcEEEEcCC
Q 010536          431 VFNMIGTVGVPMTTVEARLESVPEM---GYDALSSVPRGEICLR-GNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQPM  506 (508)
Q Consensus       431 ~~~~~~s~G~p~~~~~~~i~d~~~~---~~~~~~~~~~GEl~v~-g~~v~~gY~~~~~~~~~~~~~gw~~TGDlg~~d~d  506 (508)
                       ....+++|+|.++++++|+| +++   ..++  .|+.|||+|+ |+.++.||+++++.+.+.|.+|||+|||+|++|+|
T Consensus       317 -~~~~~~~g~p~~~~~~~i~~-~~~~~~~~~~--~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f~~g~~~TGDlg~~~~d  392 (504)
T 1t5h_X          317 -QPKTGTEMAPGFFSEVRIVR-IGGGVDEIVA--NGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPE  392 (504)
T ss_dssp             -SCSSSSEEBCCTTCCEEEEC-TTSCTTCBCC--TTCCEEEEEECCTTSCCCBTTCHHHHHHHEETTEEEEEEEEEECTT
T ss_pred             -CCCCCccccCCCCCceeEEe-ccCCCCCcCC--CCCcceEEEeCCceeeceecCCchhhhhhhcCCccccCcEEEECCC
Confidence             22348899999999999999 665   4444  4589999999 89999999999999999999999999999999999


Q ss_pred             CC
Q 010536          507 EL  508 (508)
Q Consensus       507 G~  508 (508)
                      |+
T Consensus       393 G~  394 (504)
T 1t5h_X          393 GT  394 (504)
T ss_dssp             SC
T ss_pred             ce
Confidence            95

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*

Probab=100.00  E-value=7.2e-59  Score=491.77  Aligned_cols=409  Identities=14%  Similarity=0.196  Sum_probs=328.7

Q ss_pred             CCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHHH
Q 010536           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (508)
Q Consensus        42 ~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~lA  121 (508)
                      .+++.++|+++++++|+++|+++.   +..++..+.+||+||.++++++|++|+++|+++||+|+++++|++++++++||
T Consensus        75 ~n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA  151 (652)
T 1pg4_A           75 LNLAANCLDRHLQENGDRTAIIWE---GDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLA  151 (652)
T ss_dssp             ECHHHHHTGGGHHHHTTSEEEEEE---CSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred             hhHHHHHHHHHhccCCCceEEEEE---cCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence            356889999999999999999986   43334457899999999999999999999999999999999999999999999


Q ss_pred             HHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChh---------hHhhcCccC-CCCccEEEEecCCCchhhhhh
Q 010536          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP---------SILSCLPRC-CLYLKTIVSFANVSSSQKKEA  191 (508)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  191 (508)
                      |+++|++++|+++.++.+++.+++++++++++|+++....         .+.+..... ...++.++.++.......   
T Consensus       152 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~---  228 (652)
T 1pg4_A          152 CARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDID---  228 (652)
T ss_dssp             HHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCC---
T ss_pred             HHHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCccc---
Confidence            9999999999999999999999999999999999876432         122222111 023456666643211000   


Q ss_pred             hhcCceeeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHh-hhhhhhhhccccCCCCcEEE
Q 010536          192 EELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVL-SVDQMFVVTGKVCSEEDTYF  270 (508)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~-~~~~~~~~~~~~~~~~~~~l  270 (508)
                       ........|+++..............++++++|+|||||||.||||+++|++++..+. .....+     .+..+|+++
T Consensus       229 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~~l  302 (652)
T 1pg4_A          229 -WQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVF-----DYHPGDIYW  302 (652)
T ss_dssp             -CCBTTEEEHHHHHTTSCSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHT-----TCCTTCEEE
T ss_pred             -ccCCCceeHHHHHhhcCCCCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhc-----CCCCCCEEE
Confidence             0011234677777644322334455679999999999999999999999999887664 334444     678999999


Q ss_pred             EecChHHHHHHH-HHHHHHHcCcEEEEecC-----CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHH
Q 010536          271 SFLPLAHIYDQI-IETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKL  344 (508)
Q Consensus       271 ~~~pl~~~~g~~-~~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~  344 (508)
                      +.+|++|..++. .++.+|+.|+++++.+.     ++..+++.++++++|+++++|++++.|++....            
T Consensus       303 ~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~------------  370 (652)
T 1pg4_A          303 CTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDK------------  370 (652)
T ss_dssp             ECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGG------------
T ss_pred             EccCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCcc------------
Confidence            999999999985 57899999999999863     789999999999999999999999998642110            


Q ss_pred             HHHHHHHHhhhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcC---CceeeecccccCC
Q 010536          345 FEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG---APLTQGYGLTESC  421 (508)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~---~~v~~~YG~TE~~  421 (508)
                                             .....++        ++||.+++||+++++++.+++.+.+|   +.+++.||+||++
T Consensus       371 -----------------------~~~~~~l--------~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~  419 (652)
T 1pg4_A          371 -----------------------AIEGTDR--------SSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETG  419 (652)
T ss_dssp             -----------------------GTTTCCC--------TTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGS
T ss_pred             -----------------------ccccCCc--------CceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCcccc
Confidence                                   0111122        38999999999999999999999888   8999999999999


Q ss_pred             cceeeccCC-CCcccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEec--CcccccccCCcccccccc---cCCcc
Q 010536          422 SGCFTSLAD-VFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRG--NTLFSGYYKRPDLTEEVI---VDGWF  495 (508)
Q Consensus       422 ~~~~~~~~~-~~~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g--~~v~~gY~~~~~~~~~~~---~~gw~  495 (508)
                      +.++..... .....+++|+|++|++++|+| ++|..++.|  +.|||+|+|  |+++.||+++++.+.+.|   .+|||
T Consensus       420 ~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d-~~g~~v~~g--~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~y  496 (652)
T 1pg4_A          420 GFMITPLPGAIELKAGSATRPFFGVQPALVD-NEGHPQEGA--TEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMY  496 (652)
T ss_dssp             SCSBCCCTTTCCBCTTCCBSBCTTCCEEEEC-TTCCBCCSS--EEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSE
T ss_pred             cceecCCCCCcCccCCccccCcCCCeEEEEC-CCCCCcCCC--ceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCEE
Confidence            776655433 234458999999999999999 888776654  899999999  799999999999887776   37999


Q ss_pred             ccCcEEEEcCCCC
Q 010536          496 HTGDIGEWQPMEL  508 (508)
Q Consensus       496 ~TGDlg~~d~dG~  508 (508)
                      +|||+|++|+||+
T Consensus       497 ~TGDlg~~d~dG~  509 (652)
T 1pg4_A          497 FSGDGARRDEDGY  509 (652)
T ss_dssp             EEEEEEEECTTSC
T ss_pred             ECCcEEEEcCCCc
Confidence            9999999999996

>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A

Probab=100.00  E-value=9.7e-59  Score=484.36  Aligned_cols=374  Identities=18%  Similarity=0.219  Sum_probs=310.4

Q ss_pred             CCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHH
Q 010536           40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM  119 (508)
Q Consensus        40 ~~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~  119 (508)
                      ....++.++|+++++++|+++|+++.   +      +.+||+||.++++++|++|.++|+++||+|+++++|++++++++
T Consensus        72 ~~~~~l~~~l~~~a~~~pd~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~  142 (570)
T 4gr5_A           72 PAGACVHELFEAQAARAPDAVALLHE---A------DELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVAL  142 (570)
T ss_dssp             CCSCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred             CccCCHHHHHHHHHHHCCCCeEEECC---C------CcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence            45679999999999999999999875   3      58999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCceee
Q 010536          120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCF  199 (508)
Q Consensus       120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (508)
                      +||+++|++++|++|.++.+++.++++.++++++|++......+        .....++..+..                
T Consensus       143 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~--------~~~~~~~~~~~~----------------  198 (570)
T 4gr5_A          143 LAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRL--------TGTTTLYVEDEA----------------  198 (570)
T ss_dssp             HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSS--------CSSEEEECCC------------------
T ss_pred             HHHHHHCCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhcc--------cCCcceeeeccc----------------
Confidence            99999999999999999999999999999999999987654322        111122111100                


Q ss_pred             eHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHH
Q 010536          200 SWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIY  279 (508)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~  279 (508)
                           ..............++++++|+|||||||.||||+++|+++.+..... ..+     .+..++++++.+|++|..
T Consensus       199 -----~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~-~~~-----~~~~~d~~l~~~p~~~~~  267 (570)
T 4gr5_A          199 -----ASDAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLGQ-DYA-----GFGPDEVFLQCSPVSWDA  267 (570)
T ss_dssp             ----------CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSSC-CSS-----CCSTTCEEEECSCTTSST
T ss_pred             -----cccccccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHhh-hhc-----CCCCCCEEEEecCccHHH
Confidence                 000011122334577999999999999999999999999998766552 222     677899999999999877


Q ss_pred             HHHHHHHHHHcCcEEEEec---CCHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhh
Q 010536          280 DQIIETHCIHKGCSIGFWR---GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNM  356 (508)
Q Consensus       280 g~~~~~~~l~~G~~~~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (508)
                      +...++.+++.|+++++.+   +++..+++.++++++|++.++|+++..|++....                        
T Consensus       268 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~------------------------  323 (570)
T 4gr5_A          268 FGLELFGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPE------------------------  323 (570)
T ss_dssp             HHHHHHHHHTTTCEEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGG------------------------
T ss_pred             HHHHHHHHHhcCCEEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhchh------------------------
Confidence            7777888999999999875   3899999999999999999999999998652110                        


Q ss_pred             hcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhc-CCceeeecccccCCcceeeccCCC---C
Q 010536          357 KKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESCSGCFTSLADV---F  432 (508)
Q Consensus       357 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~~---~  432 (508)
                                      ++        ++||.+++||++++.++.+.+.+.+ ++.+++.||+||++++++......   .
T Consensus       324 ----------------~~--------~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~  379 (570)
T 4gr5_A          324 ----------------AF--------EGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDLS  379 (570)
T ss_dssp             ----------------GG--------TTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCGGGTT
T ss_pred             ----------------hC--------CCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeeeeeeecccccC
Confidence                            11        3899999999999999999998877 789999999999988766543322   2


Q ss_pred             cccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCccccccccc-C--------CccccCcEEEE
Q 010536          433 NMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV-D--------GWFHTGDIGEW  503 (508)
Q Consensus       433 ~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~~-~--------gw~~TGDlg~~  503 (508)
                      ....++|+|+++++++|+| +++..++.|  +.|||+|+|++++.||+++++.+.+.|. +        |||+|||+|++
T Consensus       380 ~~~~~iG~p~~~~~v~i~d-~~~~~~~~G--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~  456 (570)
T 4gr5_A          380 GTALPIGVPLAGKRAYVLD-DDLKPAANG--ALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARR  456 (570)
T ss_dssp             SSSCCCBEECTTEEEEEEC-TTSCBCCTT--CEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEE
T ss_pred             CCccccceeeCCCEEEEEC-CCCCCCCCC--CcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCCCeEEE
Confidence            2336799999999999999 888776655  8999999999999999999999999883 2        69999999999


Q ss_pred             cCCCC
Q 010536          504 QPMEL  508 (508)
Q Consensus       504 d~dG~  508 (508)
                      |+||+
T Consensus       457 d~dG~  461 (570)
T 4gr5_A          457 RADGV  461 (570)
T ss_dssp             CTTSC
T ss_pred             CCCCe
Confidence            99995

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*

Probab=100.00  E-value=6.3e-59  Score=478.42  Aligned_cols=385  Identities=22%  Similarity=0.323  Sum_probs=311.6

Q ss_pred             HHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHHHHHHcC
Q 010536           47 QFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQA  126 (508)
Q Consensus        47 ~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~lA~~~~G  126 (508)
                      ++|++.++++|+++++...   ...+   +++||+||.++++++|++|.++|+++||+|+++++|+++++++++||+++|
T Consensus         4 ~l~~~~a~~~p~~~a~~~~---~~~~---~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G   77 (503)
T 4fuq_A            4 NLFARLFDKLDDPHKLAIE---TAAG---DKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAG   77 (503)
T ss_dssp             CHHHHHHSCCSCTTSEEEE---ETTC---CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHhCCCCceEEEe---cCCC---cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence            4788999999999999854   2111   579999999999999999999999999999999999999999999999999


Q ss_pred             CEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCceeeeHHHHHh
Q 010536          127 ITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQ  206 (508)
Q Consensus       127 ~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (508)
                      ++++|++|.++.+++.+++++++++++|++......+....... .  ..+..+.....             ..+.+...
T Consensus        78 a~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~-------------~~~~~~~~  141 (503)
T 4fuq_A           78 GVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKV-G--ATVETLGPDGR-------------GSLTDAAA  141 (503)
T ss_dssp             CEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHH-T--CEEEECCTTSC-------------SHHHHHHH
T ss_pred             cEEEecCCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhc-C--ceEEEecCCcc-------------cccchhhh
Confidence            99999999999999999999999999999976554433222111 0  12333322211             11222222


Q ss_pred             cCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHH-HH
Q 010536          207 LGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQII-ET  285 (508)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~-~~  285 (508)
                      ............++++++|+|||||||.||||.++|+++.+.+......+     .+..+|++++.+|++|.+++.. .+
T Consensus       142 ~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~~~~~p~~~~~g~~~~~~  216 (503)
T 4fuq_A          142 GASEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYW-----RFTPDDVLIHALPIYHTHGLFVASN  216 (503)
T ss_dssp             TSCSCCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCSSSHCCCCCCHH
T ss_pred             cCCCCcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHh-----CCCCCCEEEEeCChHHHHHHHHHHH
Confidence            22222233456789999999999999999999999999999998887776     7889999999999999999764 67


Q ss_pred             HHHHcCcEEEEec-CCHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhcCCCCCc
Q 010536          286 HCIHKGCSIGFWR-GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNK  364 (508)
Q Consensus       286 ~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (508)
                      .+++.|+++++.+ +++..+++.++  ++|+++++|+++..+++..                                  
T Consensus       217 ~~l~~g~~~~~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~----------------------------------  260 (503)
T 4fuq_A          217 VTLFARGSMIFLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQSP----------------------------------  260 (503)
T ss_dssp             HHHHTTCEEEECSSCCHHHHHHHHT--TCCEEEECHHHHHHHHTCT----------------------------------
T ss_pred             HHHHhCCEEEEcCCCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCC----------------------------------
Confidence            8899999998887 49999999998  8999999999999886411                                  


Q ss_pred             chhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCcceeeccCCCCcccCccccccCC
Q 010536          365 AAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTT  444 (508)
Q Consensus       365 ~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~s~G~p~~~  444 (508)
                         .....++        +++|.+++||+++++++.+.|.+.+|..+++.||+||++..+.. ........+++|+|+|+
T Consensus       261 ---~~~~~~~--------~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~-~~~~~~~~~~~G~p~~~  328 (503)
T 4fuq_A          261 ---RLTKETT--------GHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNTSN-PYDGDRVPGAVGPALPG  328 (503)
T ss_dssp             ---TCSTTTT--------TTCCEEEECSSCCCHHHHHHHHHHHSCCEEECCEETTTEECBCC-CSSSCCCTTEEEEBCTT
T ss_pred             ---Cccccch--------hhcEEEEECCCCCCHHHHHHHHHHhCCCccceEcccccCccccc-CCCCCCcCCccccCCCC
Confidence               0111111        38999999999999999999999999999999999999876543 33334445899999999


Q ss_pred             eEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccc-cCCccccCcEEEEcCCCC
Q 010536          445 VEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGDIGEWQPMEL  508 (508)
Q Consensus       445 ~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~-~~gw~~TGDlg~~d~dG~  508 (508)
                      ++++|+|.+++..++.  |+.|||+|+|++++.||+++++.+.+.| .+|||+|||+|++|+||+
T Consensus       329 ~~~~i~d~~~g~~~~~--g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~  391 (503)
T 4fuq_A          329 VSARVTDPETGKELPR--GDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDERGY  391 (503)
T ss_dssp             CEEEEECTTTCCBCCT--TCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECTTCE
T ss_pred             eEEEEEECCCCCCCcC--CCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcCCCc
Confidence            9999999555665554  4999999999999999999999999999 589999999999999984

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1

Probab=100.00  E-value=1.3e-58  Score=489.90  Aligned_cols=410  Identities=19%  Similarity=0.242  Sum_probs=328.5

Q ss_pred             CCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHH-hCCCCCCCEEEEEcCCcHhHHHHHH
Q 010536           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMR-SRGVNPGDRCGIYGSNCPEWIIAME  120 (508)
Q Consensus        42 ~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~-~~gv~~gd~Vai~~~n~~~~~~~~l  120 (508)
                      .+++.++|+++++++|+++|+++.   +...+..+.+||+||.++++++|++|+ ++|+++||+|+++++|++++++++|
T Consensus        81 ~n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~l  157 (663)
T 1ry2_A           81 LNACYNCVDRHALKTPNKKAIIFE---GDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLL  157 (663)
T ss_dssp             ECHHHHHTHHHHTTCTTSEEEEEE---CSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHH
T ss_pred             ccHHHHHHHHHhccCCCceEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHH
Confidence            367889999999999999999986   433344578999999999999999999 9999999999999999999999999


Q ss_pred             HHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChh---------hHhhcCccCCCCccEEEEecCCCchhhhhh
Q 010536          121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP---------SILSCLPRCCLYLKTIVSFANVSSSQKKEA  191 (508)
Q Consensus       121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (508)
                      ||+++|++++|+++.++.+++.+++++++++++|+++....         .+.+... .++.++.+++++.......   
T Consensus       158 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~vi~~~~~~~~~~---  233 (663)
T 1ry2_A          158 AISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALR-ETPGVRHVLVYRKTNNPSV---  233 (663)
T ss_dssp             HHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTT-SCTTCCEEEEECSSCCSSC---
T ss_pred             HHHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHH-hCCCCceEEEEecCCCCcc---
Confidence            99999999999999999999999999999999999876432         1222222 2234566666653211000   


Q ss_pred             hhcCceeeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhh-hhhhhhhccccCCCCcEEE
Q 010536          192 EELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLS-VDQMFVVTGKVCSEEDTYF  270 (508)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~-~~~~~~~~~~~~~~~~~~l  270 (508)
                      .........|+++..............++++++|+|||||||.||||+++|++++..+.. ....+     .+..+|+++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~~~  308 (663)
T 1ry2_A          234 AFHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTF-----DTHQEDVFF  308 (663)
T ss_dssp             CCCSSSEEEHHHHHTTSCSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHS-----CCCSSCEEE
T ss_pred             ccCCCccccHHHHHhhcCCCCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhc-----CCCCCcEEE
Confidence            000112346777765443223344567899999999999999999999999998876643 33344     678999999


Q ss_pred             EecChHHHHHHH-HHHHHHHcCcEEEEecC-----CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHH
Q 010536          271 SFLPLAHIYDQI-IETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKL  344 (508)
Q Consensus       271 ~~~pl~~~~g~~-~~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~  344 (508)
                      +.+|++|..+.. .++.+|+.|+++++.+.     ++..+++.|+++++|+++++|++++.|.+...             
T Consensus       309 ~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~-------------  375 (663)
T 1ry2_A          309 TAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGD-------------  375 (663)
T ss_dssp             ECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCT-------------
T ss_pred             EcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCc-------------
Confidence            999999999985 57899999999999863     78999999999999999999999998753100             


Q ss_pred             HHHHHHHHhhhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcC---CceeeecccccCC
Q 010536          345 FEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG---APLTQGYGLTESC  421 (508)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~---~~v~~~YG~TE~~  421 (508)
                                            ...+..++        ++||.+++||+++++++.+++.+.+|   +.+++.||+||++
T Consensus       376 ----------------------~~~~~~~l--------~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~  425 (663)
T 1ry2_A          376 ----------------------SYIENHSL--------KSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESG  425 (663)
T ss_dssp             ----------------------TSSSSCCC--------TTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTC
T ss_pred             ----------------------cccccCCc--------CceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCcccc
Confidence                                  00111122        38999999999999999999999887   8999999999998


Q ss_pred             cceeeccC--CCCcccCccccccCCeEEEEeecC-CCCccCCCCCCCCeEEEec--CcccccccCCcccccccc---cCC
Q 010536          422 SGCFTSLA--DVFNMIGTVGVPMTTVEARLESVP-EMGYDALSSVPRGEICLRG--NTLFSGYYKRPDLTEEVI---VDG  493 (508)
Q Consensus       422 ~~~~~~~~--~~~~~~~s~G~p~~~~~~~i~d~~-~~~~~~~~~~~~GEl~v~g--~~v~~gY~~~~~~~~~~~---~~g  493 (508)
                      +.++....  ....+++++|+|++|++++|+| + +|..++. .|+.|||+|+|  |+++.||+++++.+.+.|   .+|
T Consensus       426 ~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d-~~~g~~v~~-~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~g  503 (663)
T 1ry2_A          426 SHLVTPLAGGVTPMKPGSASFPFFGIDAVVLD-PNTGEELNT-SHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPG  503 (663)
T ss_dssp             SCSEECCTTTCCCCCTTCCCEECTTCCEEEEC-SSSTTCEEC-SSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTT
T ss_pred             CeeeccCCCCCcccCCCccccCcCCCeEEEEc-CCCCCcCCC-CCcceEEEEecCCCchhcccccChHHHHHhhhcCCCC
Confidence            77666543  2234558999999999999999 6 7766554 24889999999  589999999999888776   379


Q ss_pred             ccccCcEEEEcCCCC
Q 010536          494 WFHTGDIGEWQPMEL  508 (508)
Q Consensus       494 w~~TGDlg~~d~dG~  508 (508)
                      ||+|||+|++|+||+
T Consensus       504 ~y~TGDlg~~d~dG~  518 (663)
T 1ry2_A          504 YYFTGDGAAKDKDGY  518 (663)
T ss_dssp             SEEEEEEEEECTTCC
T ss_pred             EEEcCCEEEEcCCCC
Confidence            999999999999995

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}

Probab=100.00  E-value=3.3e-58  Score=476.70  Aligned_cols=396  Identities=19%  Similarity=0.227  Sum_probs=316.0

Q ss_pred             CCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHH
Q 010536           40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM  119 (508)
Q Consensus        40 ~~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~  119 (508)
                      ..++++.++|+++++ +|+++|+++.   +      +.+||+||.++++++|++|.++|+++||+|+++++|++++++++
T Consensus        21 ~~~~~~~~~l~~~~~-~p~~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~   90 (529)
T 2v7b_A           21 ALFNFAAYLFRLNET-RAGKTAYIDD---T------GSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAF   90 (529)
T ss_dssp             -CCCHHHHHHHHTGG-GTTSEEEECS---S------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHH
T ss_pred             cceeHHHHHHHhhhc-cCCceEEEeC---C------CCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHH
Confidence            345669999999999 9999999864   3      47999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCc-cEEEEecCCCchhhhhhhhcCcee
Q 010536          120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYL-KTIVSFANVSSSQKKEAEELGVSC  198 (508)
Q Consensus       120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  198 (508)
                      +||+++|++++|+++.++.+++.++++.++++++|++......+.+.... .... ..++..+.....        ....
T Consensus        91 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--------~~~~  161 (529)
T 2v7b_A           91 LGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALES-AEHDGCQLIVSQPRESE--------PRLA  161 (529)
T ss_dssp             HHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHC-C---CCEEEEECC--------------CC
T ss_pred             HHHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhh-ccccCceEEEecccccc--------cccc
Confidence            99999999999999999999999999999999999998766554433211 1122 344443322110        0012


Q ss_pred             eeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHH-HHHHhhhhhhhhhccccCCCCcEEEEecChHH
Q 010536          199 FSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAI-VAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAH  277 (508)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~  277 (508)
                      ..++++..............++++++|+|||||||.||||.++|+++ ..........+     .+..+|++++.+|++|
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~-----~~~~~d~~~~~~p~~~  236 (529)
T 2v7b_A          162 PLFEELIDAAAPAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPIL-----GIAENDVVFSAAKLFF  236 (529)
T ss_dssp             CBHHHHHHTSCCCSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCC-----CCCTTCEEEESSCTTS
T ss_pred             cchhhhhccCCCcccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhcc-----CCCCCcEEEEeecHHH
Confidence            24666655332222334457799999999999999999999999999 55555543333     6788999999999999


Q ss_pred             HHHHHH-HHHHHHcCcEEEEe-c-CCHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhh
Q 010536          278 IYDQII-ETHCIHKGCSIGFW-R-GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLG  354 (508)
Q Consensus       278 ~~g~~~-~~~~l~~G~~~~~~-~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (508)
                      .+++.. .+.++..|+++++. + +++..+++.++++++|+++++|+++..+++...                       
T Consensus       237 ~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-----------------------  293 (529)
T 2v7b_A          237 AYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPN-----------------------  293 (529)
T ss_dssp             HHHHHHHTHHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTT-----------------------
T ss_pred             HHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcc-----------------------
Confidence            999875 66789999999987 3 499999999999999999999999988754100                       


Q ss_pred             hhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCcceeeccCCCCcc
Q 010536          355 NMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNM  434 (508)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~  434 (508)
                                .....+            .++|.+++||+++++++.+++++.+|+.+++.||+||++.+++...... ..
T Consensus       294 ----------~~~~~~------------~~lr~~~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~-~~  350 (529)
T 2v7b_A          294 ----------LPARAD------------VAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGA-VE  350 (529)
T ss_dssp             ----------CCCGGG------------CCCCEEEECSSCCCHHHHHHHHHHHSCCEEEEEECTTTSSEEEECCTTC-CC
T ss_pred             ----------cccccC------------CceEEEEEcCCCCCHHHHHHHHHHhCCceeeeEchhhcCceeeccccCC-Cc
Confidence                      000000            2789999999999999999999999999999999999977666554443 34


Q ss_pred             cCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccccCCccccCcEEEEcCCCC
Q 010536          435 IGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQPMEL  508 (508)
Q Consensus       435 ~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDlg~~d~dG~  508 (508)
                      .+++|+|+++++++|+| +++..++.|  +.|||+|+|++++.||+++++.+.+.|.+|||+|||+|++|+||+
T Consensus       351 ~~~~G~p~~~~~~~i~d-~~g~~~~~g--~~GEl~v~g~~~~~gY~~~~~~t~~~f~~~~~~TGDl~~~~~~G~  421 (529)
T 2v7b_A          351 YGTTGRPVPGYEIELRD-EAGHAVPDG--EVGDLYIKGPSAAVMYWNNREKSRATFLGEWIRSGDKYCRLPNGC  421 (529)
T ss_dssp             TTSCCEECTTCEEEEEC-TTSCBCCTT--SCEEEEEECTTCCCCBTTCHHHHHHHEETTEEEEEEEEEECTTSC
T ss_pred             cCCcccCCCCCEEEEEC-CCCCCCCCC--CccEEEEecCCcccccCCChHHHHHhhhcCCcccCceEEECCCcc
Confidence            48999999999999999 888776655  899999999999999999999999999999999999999999985

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*

Probab=100.00  E-value=1e-57  Score=479.10  Aligned_cols=371  Identities=17%  Similarity=0.150  Sum_probs=308.0

Q ss_pred             CCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHH
Q 010536           41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME  120 (508)
Q Consensus        41 ~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~l  120 (508)
                      ...++.++|+++++++|+++|+++.   +      +++||+||.++++++|++|.++|+++||+|+++++|+++++++++
T Consensus        25 ~~~tl~~~~~~~a~~~Pd~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~l   95 (620)
T 4dg8_A           25 AHPTVVARFSEMAALHPHREAIRDR---F------GSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLL   95 (620)
T ss_dssp             GSCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHhCCCCeEEEcC---C------CcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence            4579999999999999999999875   3      579999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCceeee
Q 010536          121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFS  200 (508)
Q Consensus       121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (508)
                      ||+++|++++||+|.++.+++.++++++++++++++.......        .....+ .+...                 
T Consensus        96 ailkaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~--------~~~~~~-~~~~~-----------------  149 (620)
T 4dg8_A           96 AILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPA--------NGLPCV-PVRHL-----------------  149 (620)
T ss_dssp             HHHHTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCC--------TTSCEE-EGGGC-----------------
T ss_pred             HHHHhCCEEEeeCccChHHHHHHHHHhCCCcEEEecCcccccc--------cCCcee-eeccC-----------------
Confidence            9999999999999999999999999999999999765432211        011111 00000                 


Q ss_pred             HHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHH
Q 010536          201 WEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD  280 (508)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g  280 (508)
                          . ............++++++|+|||||||.||||+++|+++.+.+.. ...+     .+..++++++.+|++|..+
T Consensus       150 ----~-~~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~-----~~~~~d~~l~~~p~~~~~~  218 (620)
T 4dg8_A          150 ----P-AAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFL-----AFAPQMRFLVNSPLSFDAA  218 (620)
T ss_dssp             ----C-CCCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGG-----TTCTTCEEEECSCTTSTHH
T ss_pred             ----C-cCCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhh-----CCCCCCEEEEECccCHHHH
Confidence                0 001111223346799999999999999999999999999887765 3333     6788999999999999999


Q ss_pred             HHHHHHHHHcCcEEEEec---CCHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhh
Q 010536          281 QIIETHCIHKGCSIGFWR---GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMK  357 (508)
Q Consensus       281 ~~~~~~~l~~G~~~~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (508)
                      +..++.+++.|+++++.+   +++..+++.++++++|+++++|++++.+++...                          
T Consensus       219 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~--------------------------  272 (620)
T 4dg8_A          219 TLEIWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDP--------------------------  272 (620)
T ss_dssp             HHHHHHHHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCG--------------------------
T ss_pred             HHHHHHHHhcCCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcCh--------------------------
Confidence            988899999999999864   389999999999999999999999998864100                          


Q ss_pred             cCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhc-CCceeeecccccCCcceeeccCCC---Cc
Q 010536          358 KGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESCSGCFTSLADV---FN  433 (508)
Q Consensus       358 ~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~~---~~  433 (508)
                                    .++        ++||.+++||+++++++.+.+.+.+ ++.++|.||+||++++++......   ..
T Consensus       273 --------------~~l--------~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~  330 (620)
T 4dg8_A          273 --------------DCL--------GGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDLEE  330 (620)
T ss_dssp             --------------GGG--------TTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCTGGGGS
T ss_pred             --------------hhC--------CCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheEEEeccccccCC
Confidence                          011        3899999999999988888877765 889999999999998766543322   23


Q ss_pred             ccCccccccCCeEEEEeecCCCCc-cCCCCCCCCeEEEecCcccccccCCcccccccccC--------CccccCcEEEEc
Q 010536          434 MIGTVGVPMTTVEARLESVPEMGY-DALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVD--------GWFHTGDIGEWQ  504 (508)
Q Consensus       434 ~~~s~G~p~~~~~~~i~d~~~~~~-~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~~~--------gw~~TGDlg~~d  504 (508)
                      ...++|+|+++++++|+| +++.. ++  .|+.|||+|+|+++++||+++++.+.+.|.+        +||+|||+|++|
T Consensus       331 ~~~~iG~p~~~~~~~i~d-~~~~~~~~--~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~  407 (620)
T 4dg8_A          331 DDIPIGKAIAGTAVLLLD-EHGQEIAE--PDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYD  407 (620)
T ss_dssp             SSCCCBEECTTEEEEEEC-TTSCBCCS--SSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEEC
T ss_pred             CCCCceecccCcEEEEEC-ccCCCCCC--CCCceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEEC
Confidence            347899999999999999 77765 34  4589999999999999999999999999943        799999999999


Q ss_pred             CCCC
Q 010536          505 PMEL  508 (508)
Q Consensus       505 ~dG~  508 (508)
                      +||+
T Consensus       408 ~dG~  411 (620)
T 4dg8_A          408 EQGR  411 (620)
T ss_dssp             TTSC
T ss_pred             CCCe
Confidence            9995

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}

Probab=100.00  E-value=1.3e-57  Score=480.09  Aligned_cols=393  Identities=17%  Similarity=0.218  Sum_probs=325.4

Q ss_pred             CCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHH
Q 010536           41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME  120 (508)
Q Consensus        41 ~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~l  120 (508)
                      ...++.++|.++++  ||++|+++.   +      +++||+||.++++++|++|.+.|+++||+|+++++|+++++++++
T Consensus        25 ~~~~l~~~~~~~a~--pd~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~l   93 (617)
T 3rg2_A           25 QDLPLTDILTRHAA--SDSIAVIDG---E------RQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFF   93 (617)
T ss_dssp             CCCCTTHHHHTTTT--CCSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred             CcCCHHHHHHHhhC--CCCeEEecC---C------ceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHH
Confidence            35789999999988  999999875   3      689999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChh----hHhhcCccCCCCccEEEEecCCCchhhhhhhhcCc
Q 010536          121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP----SILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGV  196 (508)
Q Consensus       121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (508)
                      ||+++|++++|++|..+.+++.++++.+++++++++.....    .............+.+........           
T Consensus        94 A~l~aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------  162 (617)
T 3rg2_A           94 ALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGE-----------  162 (617)
T ss_dssp             HHHHHTCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCCST-----------
T ss_pred             HHHhcCeEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeecccccc-----------
Confidence            99999999999999999999999999999999999986541    111111111233444444433221           


Q ss_pred             eeeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChH
Q 010536          197 SCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLA  276 (508)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~  276 (508)
                        ..+.+............+..++++++|+|||||||.||||+++|+++.+.+......+     .+..++++++.+|++
T Consensus       163 --~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~  235 (617)
T 3rg2_A          163 --HNLQDAINHPAEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEIC-----QFTQQTRYLCAIPAA  235 (617)
T ss_dssp             --TBHHHHHHSCCSSCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECSCTT
T ss_pred             --cchhhhhcccccccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhc-----CCCCcceEEEeccch
Confidence              2344444444333344456779999999999999999999999999999999888777     788999999999999


Q ss_pred             HHHHHHH--HHHHHHcCcEEEEecC-CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHh
Q 010536          277 HIYDQII--ETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKL  353 (508)
Q Consensus       277 ~~~g~~~--~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (508)
                      |.+++..  ++.+++.|+++++.+. ++..+++.++++++|++.++|+++..+++........                 
T Consensus       236 ~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-----------------  298 (617)
T 3rg2_A          236 HNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESR-----------------  298 (617)
T ss_dssp             SHHHHHSSHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCT-----------------
T ss_pred             hhhhhhHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhccccc-----------------
Confidence            9999874  7889999999999874 8999999999999999999999999987643321100                 


Q ss_pred             hhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCcceeeccCCCCc
Q 010536          354 GNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFN  433 (508)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~  433 (508)
                                        .++        +++|.+++||+++++++.+++.+.++..+++.||+||++..++........
T Consensus       299 ------------------~~l--------~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~  352 (617)
T 3rg2_A          299 ------------------AQL--------ASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRLDDSAEK  352 (617)
T ss_dssp             ------------------TTT--------TTCCEEEEESSCCCHHHHHHHHHHTCSEEEEEEEETTEEEEECCTTSCHHH
T ss_pred             ------------------ccC--------CCccEEEEcCCcCCHHHHHHHHHHhCCcEEEEeccCcceeecccCCCcccc
Confidence                              011        389999999999999999999999999999999999987655433332223


Q ss_pred             ccCcccccc-CCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccc-cCCccccCcEEEEcCCCC
Q 010536          434 MIGTVGVPM-TTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGDIGEWQPMEL  508 (508)
Q Consensus       434 ~~~s~G~p~-~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~-~~gw~~TGDlg~~d~dG~  508 (508)
                      ...++|+|+ ++++++|+| ++++.++.|  +.|||+|+|+++++||+++++.+.+.| .++||+|||+|++|+||+
T Consensus       353 ~~~~~G~p~~~~~~~~i~d-~~~~~~p~G--~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~dG~  426 (617)
T 3rg2_A          353 IIHTQGYPMCPDDEVWVAD-AEGNPLPQG--EVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGY  426 (617)
T ss_dssp             HHHCCCEESCTTCEEEEEC-TTSCBCCTT--CCEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEECTTSC
T ss_pred             cccCCCccCCCCceEEEEC-CCCCCCCCC--CceEEEecCccccchhcCChhhhhhccCCCCceecCceEEEcCCce
Confidence            336789997 788999999 888877665  899999999999999999999999999 789999999999999985

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}

Probab=100.00  E-value=2.5e-57  Score=501.99  Aligned_cols=420  Identities=23%  Similarity=0.301  Sum_probs=333.3

Q ss_pred             CCCcccccccccCCCCCCCCCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCC
Q 010536           21 SGGPVYRCIYAKDGLLESPAGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVN  100 (508)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~  100 (508)
                      ....+|++..+...+    +...++.++|.++++++|+++|+++.   +..    +.+||+||.++++++|++|.++|++
T Consensus        43 ~~~~~~~~~~~~~~~----p~~~tl~~~l~~~a~~~pd~~Al~~~---~~~----~~~TY~eL~~~~~~lA~~L~~~Gv~  111 (979)
T 3tsy_A           43 NSDVIFRSKLPDIYI----PNHLSLHDYIFQNISEFATKPCLING---PTG----HVYTYSDVHVISRQIAANFHKLGVN  111 (979)
T ss_dssp             --CCCBCCSSCCCCC----CTTSCHHHHHTTTGGGTTTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHTTCC
T ss_pred             CCCceeecCCCCCCC----CCCCCHHHHHHHHHHhCCCCeEEEEC---CCC----cEEEHHHHHHHHHHHHHHHHHcCCC
Confidence            345566665543222    34589999999999999999999875   322    6899999999999999999999999


Q ss_pred             CCCEEEEEcCCcHhHHHHHHHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEe
Q 010536          101 PGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSF  180 (508)
Q Consensus       101 ~gd~Vai~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (508)
                      +||+|+++++|+++++++++||+++|++++|++|.++.+++.+++++++++++|++......+.......  . ..++.+
T Consensus       112 ~gd~V~i~~~ns~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~--~-~~~~~~  188 (979)
T 3tsy_A          112 QNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDD--G-VVIVCI  188 (979)
T ss_dssp             TTCEEEEECSSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTS--C-CEEEEC
T ss_pred             CcCEEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcC--C-ceEEEe
Confidence            9999999999999999999999999999999999999999999999999999999987766554432211  1 233444


Q ss_pred             cCCCchhhhhhhhcCceeeeHHHHHhcCCC---CCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhh
Q 010536          181 ANVSSSQKKEAEELGVSCFSWEEFLQLGTL---DCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFV  257 (508)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~  257 (508)
                      +.....      ........++++......   ........++++++|+|||||||.||||.++|++++..+........
T Consensus       189 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~  262 (979)
T 3tsy_A          189 DDNESV------PIPEGCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGEN  262 (979)
T ss_dssp             CCCTTS------CCCTTEEEGGGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSS
T ss_pred             CCcccc------cCCcccccHHHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhc
Confidence            322110      011123445554433211   22333567899999999999999999999999999988776543210


Q ss_pred             hccccCCCCcEEEEecChHHHHHHHH-HHHHHHcCcEEEEec-CCHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhh
Q 010536          258 VTGKVCSEEDTYFSFLPLAHIYDQII-ETHCIHKGCSIGFWR-GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKIS  335 (508)
Q Consensus       258 ~~~~~~~~~~~~l~~~pl~~~~g~~~-~~~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~  335 (508)
                       ....+..++++++.+|++|.+++.. ++.++..|+++++.+ +++..+++.++++++|++.++|+++..+++...    
T Consensus       263 -~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~----  337 (979)
T 3tsy_A          263 -PNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSE----  337 (979)
T ss_dssp             -CSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGG----
T ss_pred             -ccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCcc----
Confidence             0125678999999999999999964 778899999999987 499999999999999999999999998865211    


Q ss_pred             cCChhHHHHHHHHHHHHhhhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhc-CCceeee
Q 010536          336 SGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQG  414 (508)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~-~~~v~~~  414 (508)
                                                       ....++        ++||.+++||+++++++.+++.+.+ +..+++.
T Consensus       338 ---------------------------------~~~~~l--------~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~  376 (979)
T 3tsy_A          338 ---------------------------------TEKYDL--------SSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQG  376 (979)
T ss_dssp             ---------------------------------GGTSCC--------TTCCEEEESSCCCCSSHHHHHHHHCTTCEEEEC
T ss_pred             ---------------------------------ccCCCc--------cceEEEEEcCCCCCHHHHHHHHHHCCCCeEEee
Confidence                                             111122        3899999999999999999999988 8999999


Q ss_pred             cccccCCcceeeccC----CCCcccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccc
Q 010536          415 YGLTESCSGCFTSLA----DVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI  490 (508)
Q Consensus       415 YG~TE~~~~~~~~~~----~~~~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~  490 (508)
                      ||+||++.+++....    ......+++|+|+++++++|+|.+++..++.  |+.|||+|+|++++.||+++|+.+.+.|
T Consensus       377 YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~--g~~GEl~i~g~~v~~GY~~~p~~t~~~f  454 (979)
T 3tsy_A          377 YGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSR--NQPGEICIRGHQIMKGYLNNPAATAETI  454 (979)
T ss_dssp             EECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBCCT--TCCEEEEEESTTSCSEETTCHHHHHHHB
T ss_pred             echhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCCCC--CCccEEEEECCCccccccCChhhhhhhc
Confidence            999999987665421    1233458999999999999999444555554  5899999999999999999999999999


Q ss_pred             -cCCccccCcEEEEcCCCC
Q 010536          491 -VDGWFHTGDIGEWQPMEL  508 (508)
Q Consensus       491 -~~gw~~TGDlg~~d~dG~  508 (508)
                       .+|||+|||+|++|+||+
T Consensus       455 ~~~g~~~TGDl~~~~~dG~  473 (979)
T 3tsy_A          455 DKDGWLHTGDIGLIDDDDE  473 (979)
T ss_dssp             CTTSCEEEEEEEEECTTSC
T ss_pred             cCCCcEEcCCEEEEcCCce
Confidence             789999999999999985

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1

Probab=100.00  E-value=5.2e-57  Score=469.76  Aligned_cols=373  Identities=19%  Similarity=0.285  Sum_probs=306.3

Q ss_pred             CCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHH
Q 010536           41 GLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAME  120 (508)
Q Consensus        41 ~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~l  120 (508)
                      ...++.++|.++++++|+++|+++.   +      +.+||+||.++++++|++|.++|+++||+|+++++|+++++++++
T Consensus        37 ~~~~l~~~l~~~a~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l  107 (563)
T 1amu_A           37 RDKTIHQLFEEQVSKRPNNVAIVCE---N------EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGIL  107 (563)
T ss_dssp             TTCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHCCCCeEEEeC---C------ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence            3578999999999999999999865   3      589999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCceeee
Q 010536          121 ACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFS  200 (508)
Q Consensus       121 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (508)
                      ||+++|++++||+|.++.+++.++++.++++++|++......+.....     ...+..+.....               
T Consensus       108 A~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~~~-----~~~~~~~~~~~~---------------  167 (563)
T 1amu_A          108 AVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQF-----NGQVEIFEEDTI---------------  167 (563)
T ss_dssp             HHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCC-----CSEEEECCCSTT---------------
T ss_pred             HHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhccc-----cCceeeecchhh---------------
Confidence            999999999999999999999999999999999998765544322111     112222221100               


Q ss_pred             HHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHH
Q 010536          201 WEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD  280 (508)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g  280 (508)
                           ..........+..++++++|+|||||||.||||.++|+++...+......+     .+..+|++++.+|++|..+
T Consensus       168 -----~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~  237 (563)
T 1amu_A          168 -----KIREGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSL-----NVTEKDRIGQFASISFDAS  237 (563)
T ss_dssp             -----TTSCCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTS-----CCCTTCEEEECSCTTSTHH
T ss_pred             -----ccccCccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhc-----CCCCCCEEEEeCCccHHHH
Confidence                 000011122344678999999999999999999999999998887766655     7789999999999999999


Q ss_pred             HHHHHHHHHcCcEEEEecC----CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhh
Q 010536          281 QIIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNM  356 (508)
Q Consensus       281 ~~~~~~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (508)
                      +..++.+++.|+++++.+.    ++..+++.++++++|++.++|+++..+..                            
T Consensus       238 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~----------------------------  289 (563)
T 1amu_A          238 VWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDP----------------------------  289 (563)
T ss_dssp             HHHHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCT----------------------------
T ss_pred             HHHHHHHHHCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHh----------------------------
Confidence            8878889999999998763    88999999999999999999999876521                            


Q ss_pred             hcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCcceeeccCCC--Ccc
Q 010536          357 KKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADV--FNM  434 (508)
Q Consensus       357 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~--~~~  434 (508)
                               .      .+        .++|.+++||+++++++.+.|.+  .+.+++.||+||++.+++......  ...
T Consensus       290 ---------~------~~--------~~lr~~~~gG~~l~~~~~~~~~~--~~~~~~~YG~TE~~~~~~~~~~~~~~~~~  344 (563)
T 1amu_A          290 ---------E------RI--------LSIQTLITAGSATSPSLVNKWKE--KVTYINAYGPTETTICATTWVATKETIGH  344 (563)
T ss_dssp             ---------T------TC--------CSCSEEEEESSCCCHHHHHHHTT--TSEEEEEECCGGGSSCSEEEECCSSCCCS
T ss_pred             ---------c------cc--------ccccEEEEEEecCCHHHHHHHHh--CCeEEEEECcCHHhHhheeeecccccCCC
Confidence                     0      00        38999999999999999999987  479999999999987766543322  223


Q ss_pred             cCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCccccccccc-------CCccccCcEEEEcCCC
Q 010536          435 IGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV-------DGWFHTGDIGEWQPME  507 (508)
Q Consensus       435 ~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~~-------~gw~~TGDlg~~d~dG  507 (508)
                      ..++|+|+++++++|+| +++..++.|  +.|||+|+|++++.||+++|+.+.+.|.       ++||+|||+|++|+||
T Consensus       345 ~~~vG~p~~~~~v~i~d-~~~~~~~~g--~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG  421 (563)
T 1amu_A          345 SVPIGAPIQNTQIYIVD-ENLQLKSVG--EAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDG  421 (563)
T ss_dssp             SCCCBEECTTEEEEEEC-TTSCBCCTT--CEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTS
T ss_pred             CCcccceeCCCEEEEEC-CCcCCCCCC--CcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcCCC
Confidence            47899999999999999 888766655  8999999999999999999999999883       2499999999999999


Q ss_pred             C
Q 010536          508 L  508 (508)
Q Consensus       508 ~  508 (508)
                      +
T Consensus       422 ~  422 (563)
T 1amu_A          422 N  422 (563)
T ss_dssp             C
T ss_pred             e
Confidence            5

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*

Probab=100.00  E-value=2e-57  Score=470.15  Aligned_cols=377  Identities=16%  Similarity=0.149  Sum_probs=310.0

Q ss_pred             CCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHHH
Q 010536           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (508)
Q Consensus        42 ~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~lA  121 (508)
                      ..++.++|++.++++|+++|+.+.   +      +.+||+||.++++++|.+|.+.|+++||+|+++++|+++++++++|
T Consensus         3 ~~~l~~~l~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA   73 (521)
T 3l8c_A            3 LKDMIDSIEQFAQTQADFPVYDCL---G------ERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVA   73 (521)
T ss_dssp             CCCHHHHHHHHHHHSTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCcceecC---C------CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence            478999999999999999999865   3      6799999999999999999999999999999999999999999999


Q ss_pred             HHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCceeeeH
Q 010536          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW  201 (508)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (508)
                      |+++|++++|++|.++.+++.++++.++++++|++.+....+.        .. .                     ...+
T Consensus        74 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~--------~~-~---------------------~~~~  123 (521)
T 3l8c_A           74 LTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIE--------GI-S---------------------LVSL  123 (521)
T ss_dssp             HHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCCT--------TS-E---------------------EEEH
T ss_pred             HHHhCCEEEecCccccHHHHHHHHHhCCCCEEEecCccccccc--------cC-c---------------------ccch
Confidence            9999999999999999999999999999999999876432211        11 1                     1112


Q ss_pred             HHHH---hcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHH
Q 010536          202 EEFL---QLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHI  278 (508)
Q Consensus       202 ~~~~---~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~  278 (508)
                      .++.   .............++++++|+|||||||.||||.++|+++.+.+.......   ......++++++..|++|.
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~  200 (521)
T 3l8c_A          124 SEIESAKLAEMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDA---AFDVPKQPQMLAQPPYSFD  200 (521)
T ss_dssp             HHHHHHHHHTCCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCT---TTCCCSSCEEECCSCTTSG
T ss_pred             hhhhhcccccCCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhcc---ccCCCCCCeEEecCCccHH
Confidence            2221   111112223345779999999999999999999999999998877655432   1267788999999999999


Q ss_pred             HHHHHHHHHHHcCcEEEEecC----CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhh
Q 010536          279 YDQIIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLG  354 (508)
Q Consensus       279 ~g~~~~~~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (508)
                      .++...+.++..|+++++.+.    ++..+++.++++++|++.++|+++..++...                        
T Consensus       201 ~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~------------------------  256 (521)
T 3l8c_A          201 LSVMYWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSD------------------------  256 (521)
T ss_dssp             GGHHHHHHHHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTST------------------------
T ss_pred             HHHHHHHHHHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhh------------------------
Confidence            988888889999999998763    8899999999999999999999998875310                        


Q ss_pred             hhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhc-CCceeeecccccCCcceeeccCCC--
Q 010536          355 NMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESCSGCFTSLADV--  431 (508)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~~--  431 (508)
                                   .....++        +++|.+++||+++++++.+++.+.+ +..+++.||+||+++.++......  
T Consensus       257 -------------~~~~~~~--------~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~  315 (521)
T 3l8c_A          257 -------------DFCQAKM--------PALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREM  315 (521)
T ss_dssp             -------------TCSTTTC--------TTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEEECHHH
T ss_pred             -------------ccccccC--------ccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHhhhhceeeccccc
Confidence                         0001111        3899999999999999999999988 899999999999988766543221  


Q ss_pred             --CcccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccc----cCCccccCcEEEEcC
Q 010536          432 --FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI----VDGWFHTGDIGEWQP  505 (508)
Q Consensus       432 --~~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~----~~gw~~TGDlg~~d~  505 (508)
                        ....+++|+|+|+++++|+| +++..++.|  +.|||+|+||+++.||+++++.+.+.|    .+|||+|||+|++|+
T Consensus       316 ~~~~~~~~vG~p~~~~~~~i~d-~~g~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~  392 (521)
T 3l8c_A          316 VDNYTRLPIGYPKPDSPTYIID-EDGKELSSG--EQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTE  392 (521)
T ss_dssp             HHHCSSCEEEEECTTSCEEEEC-TTSCBCCTT--CCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECS
T ss_pred             ccCCCccccccccCCCEEEEEC-CCcCCCCCC--CceEEEecccccChhhcCCchHhhccCcCCCCceeeeCCCEEEEeC
Confidence              12336899999999999999 888776655  899999999999999999999999988    356999999999999


Q ss_pred             CCC
Q 010536          506 MEL  508 (508)
Q Consensus       506 dG~  508 (508)
                      ||+
T Consensus       393 dG~  395 (521)
T 3l8c_A          393 DNI  395 (521)
T ss_dssp             SSC
T ss_pred             CCe
Confidence            995

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*

Probab=100.00  E-value=8.2e-58  Score=471.80  Aligned_cols=376  Identities=18%  Similarity=0.201  Sum_probs=309.5

Q ss_pred             CCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHHHH
Q 010536           43 ESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC  122 (508)
Q Consensus        43 ~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~lA~  122 (508)
                      +|+.++|+++++++|+++|+++.   +      +.+||+||.++++++|++|.++|+++||+|+++++|+++++++++||
T Consensus         1 m~l~~~l~~~a~~~p~~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~   71 (512)
T 3fce_A            1 MKLLEQIEKWAAETPDQTAFVWR---D------AKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGC   71 (512)
T ss_dssp             CCHHHHHHHHHHHSTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHCCCceEEEeC---C------ceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHH
Confidence            47899999999999999999875   3      57999999999999999999999999999999999999999999999


Q ss_pred             HHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCceeeeHH
Q 010536          123 NSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWE  202 (508)
Q Consensus       123 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (508)
                      +++|++++|++|.++.+++.++++.++++++|++.......        .. ..++..                  ..+.
T Consensus        72 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~--------~~-~~~~~~------------------~~~~  124 (512)
T 3fce_A           72 VKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVTD--------LP-VRIVSE------------------DNLK  124 (512)
T ss_dssp             HHTTCCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCSSC--------CS-SEEEET------------------HHHH
T ss_pred             HHhCCEEEeeCCCCcHHHHHHHHHhcCCCEEEecCcccccc--------cc-cceech------------------hhhh
Confidence            99999999999999999999999999999999975432110        00 011110                  0122


Q ss_pred             HHHhcC--CCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHH
Q 010536          203 EFLQLG--TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD  280 (508)
Q Consensus       203 ~~~~~~--~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g  280 (508)
                      ++....  ..........++++++|+|||||||.||||.++|+++.+.+......+     .+..+|++++.+|++|.++
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~  199 (512)
T 3fce_A          125 DIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDF-----NLQTGQVFLNQAPFSFDLS  199 (512)
T ss_dssp             HHHHHTTTCCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHT-----TCCSSCEEEECSCTTSGGG
T ss_pred             hhcccccccCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhc-----CCCCCCEEEEeCCccHhHH
Confidence            222111  112223345679999999999999999999999999999998877776     7889999999999999999


Q ss_pred             HHHHHHHHHcCcEEEEecC----CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhh
Q 010536          281 QIIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNM  356 (508)
Q Consensus       281 ~~~~~~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (508)
                      +..++.+++.|+++++.+.    ++..+++.++++++|++.++|+++..++...                          
T Consensus       200 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~--------------------------  253 (512)
T 3fce_A          200 VMDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEA--------------------------  253 (512)
T ss_dssp             HHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTST--------------------------
T ss_pred             HHHHHHHHhCCCEEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhc--------------------------
Confidence            8888899999999999863    8999999999999999999999998875310                          


Q ss_pred             hcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhc-CCceeeecccccCCcceeeccCCC----
Q 010536          357 KKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESCSGCFTSLADV----  431 (508)
Q Consensus       357 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~~----  431 (508)
                                 .....++        +++|.+++||+++++++.+++.+.+ +..+++.||+||+++.++......    
T Consensus       254 -----------~~~~~~~--------~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~  314 (512)
T 3fce_A          254 -----------SFSESML--------PNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLD  314 (512)
T ss_dssp             -----------TCSTTTS--------TTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEECCHHHHH
T ss_pred             -----------cccchhC--------ccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhheeeEEecccccc
Confidence                       0111112        3899999999999999999999998 889999999999988776544332    


Q ss_pred             CcccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCccccccccc----CCccccCcEEEEcCCC
Q 010536          432 FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV----DGWFHTGDIGEWQPME  507 (508)
Q Consensus       432 ~~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~~----~gw~~TGDlg~~d~dG  507 (508)
                      .....++|+|+++++++|+| +++..++.|  +.|||+|+||+++.||+++++.+.+.|.    +|||+|||+|++ +||
T Consensus       315 ~~~~~~~G~~~~~~~~~i~d-~~g~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~-~dG  390 (512)
T 3fce_A          315 QYKSLPVGYCKSDCRLLIMK-EDGTIAPDG--EKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENG  390 (512)
T ss_dssp             HCSSCCCEEECTTCEEEEEC-SSSCBCCTT--SCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEE-ETT
T ss_pred             ccCCCccccccCCcEEEEEC-CCCCCCCCC--CeEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCCceEEe-cCC
Confidence            12347899999999999999 888776655  8999999999999999999999999883    569999999999 677


Q ss_pred             C
Q 010536          508 L  508 (508)
Q Consensus       508 ~  508 (508)
                      +
T Consensus       391 ~  391 (512)
T 3fce_A          391 L  391 (512)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*

Probab=100.00  E-value=4.2e-57  Score=466.21  Aligned_cols=375  Identities=19%  Similarity=0.232  Sum_probs=313.1

Q ss_pred             CCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhC-CCCCCCEEEEEcCCcHhHHHHHHH
Q 010536           43 ESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSR-GVNPGDRCGIYGSNCPEWIIAMEA  121 (508)
Q Consensus        43 ~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~-gv~~gd~Vai~~~n~~~~~~~~lA  121 (508)
                      +|+.++|+++|+++|+++|+++.   +      +++||+||.++++++|.+|.+. |+++|++|+++++|+++++++++|
T Consensus         1 m~l~~~l~~~a~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA   71 (511)
T 3e7w_A            1 MKLLHAIQTHAETYPQTDAFRSQ---G------QSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLG   71 (511)
T ss_dssp             CCHHHHHHHHHHHSTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHCCCCeEEEcC---C------ceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHH
Confidence            47899999999999999999865   3      6899999999999999999885 889999999999999999999999


Q ss_pred             HHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCceeeeH
Q 010536          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW  201 (508)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (508)
                      |+++|++++|++|.++.+++.++++.++++++|++.......   ..   .                      ......+
T Consensus        72 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~---~~---~----------------------~~~~~~~  123 (511)
T 3e7w_A           72 SVKAGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSIDA---VG---Q----------------------QIQTVSA  123 (511)
T ss_dssp             HHHHTCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTTC---CC---C----------------------SSCEEEH
T ss_pred             HHHhCCEEEecCCCChHHHHHHHHHhCCCCEEEecccccchh---cc---c----------------------ccceecH
Confidence            999999999999999999999999999999999976432111   00   0                      0112344


Q ss_pred             HHHHhcC-CCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHH
Q 010536          202 EEFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYD  280 (508)
Q Consensus       202 ~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g  280 (508)
                      +++.... ..........++++++|+|||||||.||||.++|+++...+......+     .+..++++++.+|++|.++
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~  198 (511)
T 3e7w_A          124 EELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADF-----PVSGGKIFLNQAPFSFDLS  198 (511)
T ss_dssp             HHHHTSCSCCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHS-----TTTTTCEEEECSCTTSTHH
T ss_pred             hhhhccccCCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhc-----CCCccceEEEeCCccHHHH
Confidence            5554433 112222345678999999999999999999999999999998877766     7789999999999999999


Q ss_pred             HHHHHHHHHcCcEEEEecC----CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhh
Q 010536          281 QIIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNM  356 (508)
Q Consensus       281 ~~~~~~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (508)
                      +...+.+++.|+++++.+.    ++..+++.++++++|++.++|+++..++...                          
T Consensus       199 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~--------------------------  252 (511)
T 3e7w_A          199 VMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDP--------------------------  252 (511)
T ss_dssp             HHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTST--------------------------
T ss_pred             HHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhcc--------------------------
Confidence            8888899999999998863    8999999999999999999999999876410                          


Q ss_pred             hcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhc-CCceeeecccccCCcceeeccCCC----
Q 010536          357 KKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTS-GAPLTQGYGLTESCSGCFTSLADV----  431 (508)
Q Consensus       357 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~~----  431 (508)
                                 .....++        +++|.+++||+++++++.+++.+.+ +..+++.||+||+++.++......    
T Consensus       253 -----------~~~~~~~--------~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~  313 (511)
T 3e7w_A          253 -----------GFSQDLL--------PHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVIS  313 (511)
T ss_dssp             -----------TCSTTTC--------TTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCSEEEEECHHHHT
T ss_pred             -----------ccccccC--------CcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeeeeEEeccccccc
Confidence                       0011111        3899999999999999999999998 899999999999988766543221    


Q ss_pred             CcccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccc--cCC--ccccCcEEEEcCCC
Q 010536          432 FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI--VDG--WFHTGDIGEWQPME  507 (508)
Q Consensus       432 ~~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~--~~g--w~~TGDlg~~d~dG  507 (508)
                      .....++|+|+|+++++|+| +++..++.|  +.|||+|+|++++.||+++++.+.+.|  .+|  ||+|||+|+++ ||
T Consensus       314 ~~~~~~~G~~~~~~~~~i~d-~~g~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~~-dG  389 (511)
T 3e7w_A          314 RSESLPVGFAKPDMNIFIMD-EEGQPLPEG--EKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFIQ-DG  389 (511)
T ss_dssp             TCSSCCCBEECTTCEEEEEC-TTSCBCCTT--CCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEEE-TT
T ss_pred             cCCcCCCcceeCCCEEEEEC-CCCCCCCCC--CceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCCeEEcc-CC
Confidence            22336799999999999999 888766655  899999999999999999999999998  344  89999999994 77


Q ss_pred             C
Q 010536          508 L  508 (508)
Q Consensus       508 ~  508 (508)
                      +
T Consensus       390 ~  390 (511)
T 3e7w_A          390 Q  390 (511)
T ss_dssp             E
T ss_pred             e
Confidence            4

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}

Probab=100.00  E-value=2.7e-56  Score=465.71  Aligned_cols=391  Identities=18%  Similarity=0.165  Sum_probs=312.0

Q ss_pred             CCCCCHHHHHHHHHHhCCCCCceeeeeccCC----CCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhH
Q 010536           40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDG----KVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEW  115 (508)
Q Consensus        40 ~~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~----~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~  115 (508)
                      ....++.++|+++|+++|+++|+++.   ++    .....+.+||+||.++++++|++|.+.|+ +||+|+++++|++++
T Consensus        17 ~~~~tl~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~   92 (562)
T 3ite_A           17 TSTVPPSHYIETWAKTHPEWKAVEVA---TGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIA   92 (562)
T ss_dssp             -CCCCTTHHHHHHHHHCTTSEEEEEE---ECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHH
T ss_pred             cccCCHHHHHHHHHHHCCCchhhhcc---cccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHH
Confidence            45688999999999999999999876   32    12234789999999999999999999999 799999999999999


Q ss_pred             HHHHHHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcC
Q 010536          116 IIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELG  195 (508)
Q Consensus       116 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (508)
                      +++++||+++|++++||+|.++.+++.++++.++++++|+++.....+.      ......++...  .           
T Consensus        93 ~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~--~-----------  153 (562)
T 3ite_A           93 FAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVE------LPPETKVLDTK--N-----------  153 (562)
T ss_dssp             HHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCC------CCTTCEEEETT--C-----------
T ss_pred             HHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEccccccccc------cCccceeeccc--c-----------
Confidence            9999999999999999999999999999999999999999876543221      01111222111  0           


Q ss_pred             ceeeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhh---ccccCCCCcEEEEe
Q 010536          196 VSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVV---TGKVCSEEDTYFSF  272 (508)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~  272 (508)
                         ..+.+................+++++|+|||||||.||||.++|+++...+..+...+..   ....+...+++++.
T Consensus       154 ---~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (562)
T 3ite_A          154 ---QSFIENLSTQDTSDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCL  230 (562)
T ss_dssp             ---HHHHHHHHHSCCSCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECC
T ss_pred             ---hhhhhhcccccccccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEe
Confidence               122233322222223334567889999999999999999999999999888776554321   11356788999999


Q ss_pred             cChHHHHHHHHHHHHHHcCcEEEEecC--CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHH
Q 010536          273 LPLAHIYDQIIETHCIHKGCSIGFWRG--DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYN  350 (508)
Q Consensus       273 ~pl~~~~g~~~~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  350 (508)
                      .|++|..++..++.++..|+++++.+.  .+..+++.++++++|+++++|++++.+..                      
T Consensus       231 ~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~----------------------  288 (562)
T 3ite_A          231 ASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGL----------------------  288 (562)
T ss_dssp             SCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTC----------------------
T ss_pred             cCchhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhccc----------------------
Confidence            999998888878889999999988764  46789999999999999999998876521                      


Q ss_pred             HHhhhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCcceeeccCC
Q 010536          351 YKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLAD  430 (508)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~  430 (508)
                                     .+    .++        +++|.+++||+++++++.+++++.+++.+++.||+||+++.++.....
T Consensus       289 ---------------~~----~~~--------~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~  341 (562)
T 3ite_A          289 ---------------VP----EDA--------PHLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVTIGCSAGRIL  341 (562)
T ss_dssp             ---------------CG----GGS--------TTCCEEEEESSCCCHHHHHHHTTCSSCEEEEEECCGGGCSCSEEEECC
T ss_pred             ---------------Cc----ccc--------CceEEEEEecCCCCHHHHHHHhhCCCcEEEEeeccchheeeeeeeeec
Confidence                           00    011        389999999999999999999998899999999999998877766555


Q ss_pred             CCcccCccccccCCeEEEEeecCCC-CccCCCCCCCCeEEEecCcccccccCCcccccccccCC--ccccCcEEEEcCCC
Q 010536          431 VFNMIGTVGVPMTTVEARLESVPEM-GYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDG--WFHTGDIGEWQPME  507 (508)
Q Consensus       431 ~~~~~~s~G~p~~~~~~~i~d~~~~-~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~~~g--w~~TGDlg~~d~dG  507 (508)
                      .....+++|+|+++++++|+| +++ ..++  .|+.|||+|+|++++.||+++++.+...+.+|  ||+|||+|++|+||
T Consensus       342 ~~~~~~~~G~p~~~~~~~i~d-~~~~~~~~--~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~g~~w~~TGDlg~~d~dG  418 (562)
T 3ite_A          342 PDSDTRCIGHPLGDSVAHVLA-PGSNEHVK--KGMAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTGDIVRMDADS  418 (562)
T ss_dssp             TTSCTTEEEEECTTCEEEEEC-TTSSCBCC--TTSCEEEEEESTTSCCEESSCTTCCSEEEETTEEEEEEEEEEEECTTS
T ss_pred             CCCCCccccccCCCCeEEEEe-CCCCCCCC--CCCceEEEEeccccchhhCCCccccccccCCCCEEEecCCEEEEcCCC
Confidence            444558999999999999999 544 4344  55999999999999999999999988777777  99999999999999


Q ss_pred             C
Q 010536          508 L  508 (508)
Q Consensus       508 ~  508 (508)
                      +
T Consensus       419 ~  419 (562)
T 3ite_A          419 S  419 (562)
T ss_dssp             C
T ss_pred             e
Confidence            6

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*

Probab=100.00  E-value=6.7e-57  Score=473.55  Aligned_cols=392  Identities=19%  Similarity=0.223  Sum_probs=312.4

Q ss_pred             CCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHH
Q 010536           40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM  119 (508)
Q Consensus        40 ~~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~  119 (508)
                      ....++.++|+++|+++|+++|+++.   ++  +..+++||+||.++++++|++|.++|+++||+|+++++|++++++++
T Consensus         8 ~~~~tl~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~   82 (590)
T 3kxw_A            8 LQCQSLVDVVRLRALHSPNKKSCTFL---NK--ELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAF   82 (590)
T ss_dssp             HTCSSHHHHHHHHHHHCTTSEEEEEE---ET--TEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred             cCcccHHHHHHHHHHhCCCCeEEEEE---cC--CeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHH
Confidence            45689999999999999999999886   42  23378999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCEEEeccCCC---CHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCc
Q 010536          120 EACNSQAITYVPLYDTL---GANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGV  196 (508)
Q Consensus       120 lA~~~~G~~~v~l~~~~---~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (508)
                      +||+++|++++|++|..   +.+++.++++.+++++++++......+.............+....               
T Consensus        83 lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------  147 (590)
T 3kxw_A           83 LGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIPAIA---------------  147 (590)
T ss_dssp             HHHHHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTEEEEE---------------
T ss_pred             HHHHHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhcccccccceee---------------
Confidence            99999999999999988   457899999999999999987655544322211111111111111               


Q ss_pred             eeeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChH
Q 010536          197 SCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLA  276 (508)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~  276 (508)
                          .+++..............++++++|+|||||||.||||.++|++++..+......+     .+..++++++.+|++
T Consensus       148 ----~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~  218 (590)
T 3kxw_A          148 ----LESIELNRSSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSF-----HMNDETIIFSWLPPH  218 (590)
T ss_dssp             ----GGGCCGGGGGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTT
T ss_pred             ----chhccccccccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhh-----CCCCcCeEEEecCCC
Confidence                11110000111223455778999999999999999999999999999999987776     788999999999999


Q ss_pred             HHHHHHH-HHHHHHcCcEEEEecC-----CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHH
Q 010536          277 HIYDQII-ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYN  350 (508)
Q Consensus       277 ~~~g~~~-~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  350 (508)
                      |.+++.. ++.+++.|+++++.+.     ++..+++.++++++|++.++|.++..+++.+..                  
T Consensus       219 h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~------------------  280 (590)
T 3kxw_A          219 HDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIRE------------------  280 (590)
T ss_dssp             SHHHHHTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCG------------------
T ss_pred             cchhhHHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhh------------------
Confidence            9999985 8889999999998863     789999999999999999999999988653211                  


Q ss_pred             HHhhhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcC------CceeeecccccCCcce
Q 010536          351 YKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG------APLTQGYGLTESCSGC  424 (508)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~------~~v~~~YG~TE~~~~~  424 (508)
                                      ......++        +++|.+++||+++++++.+++.+.++      ..+++.||+||+++++
T Consensus       281 ----------------~~~~~~~l--------~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~  336 (590)
T 3kxw_A          281 ----------------EKKEGLDL--------SSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLV  336 (590)
T ss_dssp             ----------------GGGTTCCC--------TTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEE
T ss_pred             ----------------hhccCCCc--------hhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCcccccccccccccccee
Confidence                            11111122        38999999999999999999999873      4799999999999887


Q ss_pred             eeccCC--------------------------CCcccCccccccCCeEEEEeecCC-CCccCCCCCCCCeEEEecCcccc
Q 010536          425 FTSLAD--------------------------VFNMIGTVGVPMTTVEARLESVPE-MGYDALSSVPRGEICLRGNTLFS  477 (508)
Q Consensus       425 ~~~~~~--------------------------~~~~~~s~G~p~~~~~~~i~d~~~-~~~~~~~~~~~GEl~v~g~~v~~  477 (508)
                      +.....                          ......++|+|+++  ++|+| ++ +..++  .|+.|||+|+||+++.
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d-~~~~~~~~--~g~~GEl~v~g~~v~~  411 (590)
T 3kxw_A          337 TGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIID-PDTLIPCD--FDQVGEIWVQSNSVAK  411 (590)
T ss_dssp             EECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEEC-TTTCCBCC--TTBCEEEEEESTTSCC
T ss_pred             ecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEc-CCCCcCCC--CCCEEEEEEeCCcccc
Confidence            754321                          11233688999998  88898 55 54444  5589999999999999


Q ss_pred             cccCCcccccccccC-------C--ccccCcEEEEcCCCC
Q 010536          478 GYYKRPDLTEEVIVD-------G--WFHTGDIGEWQPMEL  508 (508)
Q Consensus       478 gY~~~~~~~~~~~~~-------g--w~~TGDlg~~d~dG~  508 (508)
                      ||+++|+.+.+.|.+       |  ||+|||+|++| ||+
T Consensus       412 GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~  450 (590)
T 3kxw_A          412 GYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENE  450 (590)
T ss_dssp             CBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTE
T ss_pred             cccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCE
Confidence            999999999999843       5  99999999999 774

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=100.00  E-value=2e-56  Score=460.29  Aligned_cols=385  Identities=21%  Similarity=0.295  Sum_probs=303.3

Q ss_pred             CHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHHHHH
Q 010536           44 SPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACN  123 (508)
Q Consensus        44 ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~lA~~  123 (508)
                      |+.++|+++++++|+++|+++.   +      +++||+||.++++++|.+|.+.   +||+|+++++|+++++++++||+
T Consensus         2 tl~~~l~~~a~~~pd~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~   69 (501)
T 3ipl_A            2 SLDFWLYKQAQQNGHHIAITDG---Q------ESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACW   69 (501)
T ss_dssp             -CCCHHHHHHHHHTTSEEEECS---S------CEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhcCCceEEEeC---C------cEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHH
Confidence            5678999999999999999875   3      5799999999999999999987   89999999999999999999999


Q ss_pred             HcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCcee-eeHH
Q 010536          124 SQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSC-FSWE  202 (508)
Q Consensus       124 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  202 (508)
                      ++|++++|+++.++.+++.++++.++++++|++.............  ..+..+..........   ........ ...+
T Consensus        70 ~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~  144 (501)
T 3ipl_A           70 LANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSL--DDIEFAGRDITTNGLL---DNTMGIQYDTSNE  144 (501)
T ss_dssp             HTTCEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEET--TC------------------------------
T ss_pred             HcCCEEEecCccCCHHHHHHHHHhcCCCEEEEcccccccccccccc--ccceeeeeeccccccc---ccccccccccchh
Confidence            9999999999999999999999999999999998755433221110  1111111000000000   00000000 0001


Q ss_pred             HHHhcC-CCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHH
Q 010536          203 EFLQLG-TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ  281 (508)
Q Consensus       203 ~~~~~~-~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~  281 (508)
                      ...... ..........++++++|+|||||||.||||.++|+++...+......+     .+..++++++.+|++|.+++
T Consensus       145 ~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~g~  219 (501)
T 3ipl_A          145 TVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESL-----GFDRDTNWLSVLPIYHISGL  219 (501)
T ss_dssp             -----CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHT-----CCCTTCEEEECSCTTSHHHH
T ss_pred             hccccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhh-----CCCccCEEEEeCcHHHHHHH
Confidence            111101 001122345779999999999999999999999999999998887776     78899999999999999999


Q ss_pred             HHHHHHHHcCcEEEEecC-CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhcCC
Q 010536          282 IIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGM  360 (508)
Q Consensus       282 ~~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (508)
                      ...+.+++.|+++++.+. ++..+++.++++++|+++++|++++.|++....                            
T Consensus       220 ~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~----------------------------  271 (501)
T 3ipl_A          220 SVLLRAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLH----------------------------  271 (501)
T ss_dssp             HHHHHHHHHTCEEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCC----------------------------
T ss_pred             HHHHHHHHcCceEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCC----------------------------
Confidence            888899999999999874 999999999999999999999999998652100                            


Q ss_pred             CCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCcceeeccCCC-CcccCccc
Q 010536          361 PQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADV-FNMIGTVG  439 (508)
Q Consensus       361 ~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~-~~~~~s~G  439 (508)
                           .               ..++|.+++||+++++++.+++.+ +++++++.||+||+++.+....... ....+++|
T Consensus       272 -----~---------------~~~lr~i~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G  330 (501)
T 3ipl_A          272 -----E---------------PYNLQKILLGGAKLSATMIETALQ-YNLPIYNSFGMTETCSQFLTATPEMLHARPDTVG  330 (501)
T ss_dssp             -----S---------------CTTCCEEEECSSCCCHHHHHHHHH-TTCCEEEEEEEGGGTEEEEEECHHHHHHCTTCCB
T ss_pred             -----C---------------cCcccEEEEeCCCCCHHHHHHHHH-hCCCEeccccccccccceeecCccccccCCCCCC
Confidence                 0               026899999999999999999988 4999999999999987655443322 23447899


Q ss_pred             cccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccccCCccccCcEEEEcCCCC
Q 010536          440 VPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQPMEL  508 (508)
Q Consensus       440 ~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDlg~~d~dG~  508 (508)
                      +|+++++++|+| ++       .++.|||+|+|+.++.||+++++.+.+ |.+|||+|||+|++|+||+
T Consensus       331 ~p~~~~~~~i~d-~~-------~~~~GEl~v~g~~~~~gY~~~~~~t~~-~~~g~~~TGDl~~~~~~G~  390 (501)
T 3ipl_A          331 MPSANVDVKIKN-PN-------KEGHGELMIKGANVMNGYLYPTDLTGT-FENGYFNTGDIAEIDHEGY  390 (501)
T ss_dssp             EECTTCEEEEES-CC-------SSCCEEEEEESTTSCSCCSBSTTCCCS-EETTEEEEEEEEEECTTSC
T ss_pred             CCCCCcEEEEec-CC-------CCCccEEEEeccchhhhhCcChhhcch-hcCCceecCCEEEEcCCCe
Confidence            999999999999 44       236899999999999999999999887 8899999999999999985

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*

Probab=100.00  E-value=1.1e-56  Score=461.83  Aligned_cols=374  Identities=24%  Similarity=0.339  Sum_probs=300.7

Q ss_pred             CCCCCHHHHHHHHHHhCCC-CCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHH
Q 010536           40 AGLESPWQFFCDSAKRIPN-NQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIA  118 (508)
Q Consensus        40 ~~~~ti~~~l~~~a~~~p~-~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~  118 (508)
                      ..+.++.+.|.++++++|+ ++|+++.   +      +++||+||.++++++|.+|.     .|++|+++++|+++++++
T Consensus        19 ~~~~tl~~~l~~~a~~~p~d~~Al~~~---~------~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~   84 (505)
T 3nyq_A           19 SHMSSLFPALSPAPTGAPADRPALRFG---E------RSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVA   84 (505)
T ss_dssp             -----CCTTTSSCCCSGGGGSEEEEET---T------EEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHH
T ss_pred             cccchhHHHHHHHHHhCCCCCeEEEEC---C------eeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHH
Confidence            4568899999999999987 9999875   3      68999999999999998774     489999999999999999


Q ss_pred             HHHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCcee
Q 010536          119 MEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSC  198 (508)
Q Consensus       119 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (508)
                      ++||+++|++++||+|.++.+++.+++++++++++|++......      .....+..+ .+...               
T Consensus        85 ~la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~------~~~~~~~~~-~~~~~---------------  142 (505)
T 3nyq_A           85 VVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAELP------PALGALERV-DVDVR---------------  142 (505)
T ss_dssp             HHHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCCC------GGGTTSEEE-ECCTT---------------
T ss_pred             HHHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCccccc------hhhcccccc-ccccc---------------
Confidence            99999999999999999999999999999999999998652110      001111111 11100               


Q ss_pred             eeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHH
Q 010536          199 FSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHI  278 (508)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~  278 (508)
                               ...........++++++|+|||||||.||||.++|+++...+......+     .+..+|++++.+|++|.
T Consensus       143 ---------~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~  208 (505)
T 3nyq_A          143 ---------ARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAW-----QWTGEDVLVQGLPLFHV  208 (505)
T ss_dssp             ---------CCCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECCCTTSH
T ss_pred             ---------cccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHh-----CCCCCcEEEEeccHHHH
Confidence                     0011223345678999999999999999999999999999999888777     78899999999999999


Q ss_pred             HHHHH-HHHHHHcCcEEEEec-CCHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhh
Q 010536          279 YDQII-ETHCIHKGCSIGFWR-GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNM  356 (508)
Q Consensus       279 ~g~~~-~~~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (508)
                      .++.. ++.++..|+++++.+ +++..+++.+ ++++|+++++|+++..+++.+...                       
T Consensus       209 ~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~-----------------------  264 (505)
T 3nyq_A          209 HGLVLGILGPLRRGGSVRHLGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPAD-----------------------  264 (505)
T ss_dssp             HHHTTTTHHHHHHTCEEEECSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGC-----------------------
T ss_pred             HHHHHHHHHHHhcCCEEEECCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcC-----------------------
Confidence            99874 788999999999886 4899999999 889999999999999987532110                       


Q ss_pred             hcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCcceeeccCCCCcccC
Q 010536          357 KKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIG  436 (508)
Q Consensus       357 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~  436 (508)
                                + ....+++        ++|.+++||+++++++.+++.+.++..+++.||+||+++.++..... ....+
T Consensus       265 ----------~-~~~~~l~--------~lr~i~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~-~~~~~  324 (505)
T 3nyq_A          265 ----------P-ELAKALA--------GARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADG-EPRAG  324 (505)
T ss_dssp             ----------H-HHHHHHH--------HCSEEEECSSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCTTS-CCCTT
T ss_pred             ----------c-hhhcccc--------cceEEEECCCCCCHHHHHHHHHhcCCeeecccchhhcccccccCCCC-CCCCC
Confidence                      0 1112233        78999999999999999999999999999999999998766554433 33448


Q ss_pred             ccccccCCeEEEEeecCCCCccCC-CCCCCCeEEEecCcccccccCCcccccccc-cCCccccCcEEEEcCCCC
Q 010536          437 TVGVPMTTVEARLESVPEMGYDAL-SSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGDIGEWQPMEL  508 (508)
Q Consensus       437 s~G~p~~~~~~~i~d~~~~~~~~~-~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~-~~gw~~TGDlg~~d~dG~  508 (508)
                      ++|+|+++++++|+| +++..++. ..|+.|||+|+|++++.||+++++.+.+.| .+|||+|||+|++|+||+
T Consensus       325 ~vG~p~~~~~~~i~d-~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~dG~  397 (505)
T 3nyq_A          325 TVGVPLPGVELRLVE-EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGY  397 (505)
T ss_dssp             CCCEECTTCEEEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEECTTSC
T ss_pred             CcccCCCCCEEEEEC-CCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeEEECCCcc
Confidence            999999999999999 88877665 235899999999999999999999999999 699999999999999985

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}

Probab=100.00  E-value=3.5e-53  Score=480.20  Aligned_cols=376  Identities=18%  Similarity=0.264  Sum_probs=311.6

Q ss_pred             CCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHHH
Q 010536           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (508)
Q Consensus        42 ~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~lA  121 (508)
                      ..++.++|+++++++|+++|+++.   +      +.+||+||.++++++|++|.+.|+++|++|+|+++|+++++++++|
T Consensus       463 ~~~l~~~~~~~~~~~p~~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~la  533 (1304)
T 2vsq_A          463 TKPLTYWFKEAVNANPDAPALTYS---G------QTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILG  533 (1304)
T ss_dssp             CCCHHHHHHHHHHHCTTSEEEESS---S------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhCCCCeEEEEC---C------eeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHH
Confidence            478999999999999999999875   3      4799999999999999999999999999999999999999999999


Q ss_pred             HHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCceeeeH
Q 010536          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW  201 (508)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (508)
                      |+++|+++|||+|.++.+++.++++++++++++++......+..     .......+.+++...                
T Consensus       534 ilkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~-----~~~~~~~~~~~~~~~----------------  592 (1304)
T 2vsq_A          534 VLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAE-----LPYTGTTLFIDDQTR----------------  592 (1304)
T ss_dssp             HHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTT-----CCCCSEEEESSCGGG----------------
T ss_pred             HHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhc-----cCCCCcEEEeccccc----------------
Confidence            99999999999999999999999999999999998765443211     111122333221100                


Q ss_pred             HHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHH
Q 010536          202 EEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ  281 (508)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~  281 (508)
                        . . ...........++++++|+|||||||.||||+++|+++.+. ......+     .+..++++++..|++|..+.
T Consensus       593 --~-~-~~~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~-----~~~~~d~~l~~~~~~fd~~~  662 (1304)
T 2vsq_A          593 --F-E-EQASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYM-----AFSDQDTFLSVSNYAFDAFT  662 (1304)
T ss_dssp             --G-G-SCSSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSS-----CCCTTCEEEECSCTTSTHHH
T ss_pred             --c-c-cccCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhc-----CCCCCCEEEEECCccHHHHH
Confidence              0 0 01112223456789999999999999999999999999876 3333333     67889999999999998888


Q ss_pred             HHHHHHHHcCcEEEEecC----CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhh
Q 010536          282 IIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMK  357 (508)
Q Consensus       282 ~~~~~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (508)
                      ..++.+++.|+++++.+.    ++..+++.++++++|+++++|++++.+.+..                           
T Consensus       663 ~~~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~---------------------------  715 (1304)
T 2vsq_A          663 FDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAG---------------------------  715 (1304)
T ss_dssp             HHHHHHHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHC---------------------------
T ss_pred             HHHHHHHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhc---------------------------
Confidence            788999999999999863    8999999999999999999999999885410                           


Q ss_pred             cCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcC-CceeeecccccCCcceeeccCCC---Cc
Q 010536          358 KGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG-APLTQGYGLTESCSGCFTSLADV---FN  433 (508)
Q Consensus       358 ~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~-~~v~~~YG~TE~~~~~~~~~~~~---~~  433 (508)
                                 .  ..++        ++|.+++||+++++++.+.+.+.++ ..++|.||+||+++.++......   ..
T Consensus       716 -----------~--~~~~--------~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~  774 (1304)
T 2vsq_A          716 -----------E--DWMK--------GLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSI  774 (1304)
T ss_dssp             -----------S--HHHH--------TCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCCSSC
T ss_pred             -----------h--hcCC--------CccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCccccC
Confidence                       0  0112        7999999999999999999988774 78999999999998776554322   22


Q ss_pred             ccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCccccccccc-------CCccccCcEEEEcCC
Q 010536          434 MIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV-------DGWFHTGDIGEWQPM  506 (508)
Q Consensus       434 ~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~~-------~gw~~TGDlg~~d~d  506 (508)
                      ...++|+|+++++++|+| ++++.+|.|  +.|||+|+|+++++||+++|+.|.+.|.       ++||+|||+|++++|
T Consensus       775 ~~~~iG~p~~~~~~~i~d-~~~~~~p~G--~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~d  851 (1304)
T 2vsq_A          775 SSLPIGKPISNASVYILN-EQSQLQPFG--AVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPD  851 (1304)
T ss_dssp             SSCCCBEECTTEEEEEEC-TTSCBCCTT--CCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECTT
T ss_pred             CCCCCceeeCCCEEEEEC-CCcCCCCCC--CceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEcCC
Confidence            336899999999999999 888877765  8999999999999999999999999982       349999999999999


Q ss_pred             CC
Q 010536          507 EL  508 (508)
Q Consensus       507 G~  508 (508)
                      |+
T Consensus       852 G~  853 (1304)
T 2vsq_A          852 GT  853 (1304)
T ss_dssp             SC
T ss_pred             Ce
Confidence            95

>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}

Probab=100.00  E-value=3.2e-34  Score=280.76  Aligned_cols=208  Identities=17%  Similarity=0.184  Sum_probs=175.8

Q ss_pred             CCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEec
Q 010536          219 KTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWR  298 (508)
Q Consensus       219 ~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~~~~~~l~~G~~~~~~~  298 (508)
                      .+++++|+|||||||.||||++||+++.+.+......+     .+.++|++++.+|++|.+|+..++.+++.|+++++..
T Consensus        36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~  110 (358)
T 4gs5_A           36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKAL-----SLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTE  110 (358)
T ss_dssp             HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEEC
T ss_pred             CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHh-----CCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecC
Confidence            36789999999999999999999999999999888777     7889999999999999999988888999999998876


Q ss_pred             CCHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhcCCCCCcchhhhHHHHHHHHH
Q 010536          299 GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIR  378 (508)
Q Consensus       299 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  378 (508)
                      . ....++.++++++|++.++|+++..+++...                                      ...++    
T Consensus       111 ~-~~~~~~~i~~~~~t~~~~~P~~l~~ll~~~~--------------------------------------~~~~l----  147 (358)
T 4gs5_A          111 P-TANPLAGLDHADFDFVAMVPMQLQSILENSA--------------------------------------TSGQV----  147 (358)
T ss_dssp             C-CSCTTTTCSSCCCSEEEECHHHHHHHHHCTT--------------------------------------TGGGG----
T ss_pred             c-cccHHHHHHHhCCeEEEcChHHHHHhhcccc--------------------------------------ccccC----
Confidence            4 2334678999999999999999999865210                                      01122    


Q ss_pred             HHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCcceeeccCCCCcccCccccccCCeEEEEeecCCCCcc
Q 010536          379 EAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYD  458 (508)
Q Consensus       379 ~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~s~G~p~~~~~~~i~d~~~~~~~  458 (508)
                          ++||.+++||+++++++.+++++ ++.++++.||+||+++.++....+.... +++|.+.||+++.+.+       
T Consensus       148 ----~~lr~v~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TEt~~~~~~~~~~~~~~-g~~~~~~pgv~~~~~~-------  214 (358)
T 4gs5_A          148 ----DRLGKVLLGGAPVNHALAMQISD-LAMPVYQSYGMTETVSHVALKALNGPEA-SELYVFLPGIQYGVDE-------  214 (358)
T ss_dssp             ----GGGCSEEECSSCCCHHHHHHHHT-CSSCEEEEEECGGGSSEEEEEECSSTTC-CSCEEECTTCEEEECT-------
T ss_pred             ----CcceEEEEcccCCCchheecccc-cCceEEeccccccccceeeccccccccc-ceeeccCCCeEEEecC-------
Confidence                28999999999999999999987 4999999999999998877766554443 8899999999888754       


Q ss_pred             CCCCCCCCeEEEecCcccccccCCcccccccccCCccccCcEEEEcCCCC
Q 010536          459 ALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQPMEL  508 (508)
Q Consensus       459 ~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDlg~~d~dG~  508 (508)
                            .|||+++|+.+               .+|||+|||+|++|+||+
T Consensus       215 ------~Gel~~~g~~~---------------~~g~~~TGDlg~~d~~g~  243 (358)
T 4gs5_A          215 ------RGCLHISGAVT---------------NGQTVQTNDLVEIHGNAF  243 (358)
T ss_dssp             ------TSEEEEESGGG---------------TTCCEEEEEEEEECSSEE
T ss_pred             ------cCceEEecccc---------------cCcceecCCccccccCce
Confidence                  69999998642               368999999999999874

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=100.00  E-value=5.1e-32  Score=273.39  Aligned_cols=230  Identities=14%  Similarity=0.087  Sum_probs=182.4

Q ss_pred             CCCC-CCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHH-HHHHHHHcCcE
Q 010536          216 PKKK-TNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQI-IETHCIHKGCS  293 (508)
Q Consensus       216 ~~~~-~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~-~~~~~l~~G~~  293 (508)
                      .... +++++++|||||||.||+|.++|+++...+..+...+..  ..+..+|++++.+|+.|..+.. ..+.++..|++
T Consensus        81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~  158 (436)
T 3qov_A           81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYM--VGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCL  158 (436)
T ss_dssp             CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHH--TTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCE
T ss_pred             cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHH--cCCCCCCEEEECcccccchhHHHHHHHHHHcCCE
Confidence            4455 889999999999999999999999998877666443322  2678899999999986555544 57788999999


Q ss_pred             EEEec-CCHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhcCCCCCcchhhhHHH
Q 010536          294 IGFWR-GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSL  372 (508)
Q Consensus       294 ~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (508)
                      +++.+ +++..+++.++++++|+++++|+++..|++.+........                                  
T Consensus       159 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~----------------------------------  204 (436)
T 3qov_A          159 TVPAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPR----------------------------------  204 (436)
T ss_dssp             EECCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTT----------------------------------
T ss_pred             EEeCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcc----------------------------------
Confidence            98876 4999999999999999999999999999875443211100                                  


Q ss_pred             HHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCcceeeccCCCCcccCccccccCCeEEEEeec
Q 010536          373 VFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESV  452 (508)
Q Consensus       373 ~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~s~G~p~~~~~~~i~d~  452 (508)
                       +        +++|.+++||+++++++.+++++.+|+.+++.||+||+++.++......  . ...|.+.++++++|+|.
T Consensus       205 -~--------~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~--~-~g~~~~~~~~~v~i~d~  272 (436)
T 3qov_A          205 -E--------TTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMTEMNGPGVAFECQE--Q-NGMHFWEDCYLVEIIDP  272 (436)
T ss_dssp             -S--------SSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEEGGGTEEEEEEECTT--C-SSEEECTTTEEEEEECT
T ss_pred             -c--------CCccEEEEeCCcCCHHHHHHHHHHhCccEEecCcchhhcCCeeEEecCC--C-CeeEEccCceEEEEEEC
Confidence             1        3899999999999999999999999999999999999965533322211  1 23677888999999995


Q ss_pred             CCCCccCCCCCCCCeEEEecCcccccccCCcccccccccCCccccCcEEEEcCCC
Q 010536          453 PEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQPME  507 (508)
Q Consensus       453 ~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDlg~~d~dG  507 (508)
                      +++..++  .|+.|||+|+|.            +.+.|.++||+|||+|++|++|
T Consensus       273 ~~g~~~~--~g~~Gel~v~~~------------~~~~~~~~~y~TGDl~~~~~~g  313 (436)
T 3qov_A          273 ETGEPVP--EGEIGELVLTTL------------DREMMPLIRYRTRDLTRILPGK  313 (436)
T ss_dssp             TTCSBCS--TTCCEEEEEEES------------SCCSSCCCSEEEEEEECEECSC
T ss_pred             CCCCCCC--CCCceEEEEecc------------CcCCceEEEEEcCCEEEEcCCC
Confidence            5566555  458999999983            3345678999999999999997

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=100.00  E-value=1.6e-31  Score=269.87  Aligned_cols=245  Identities=16%  Similarity=0.084  Sum_probs=186.8

Q ss_pred             eHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecCh-HHH
Q 010536          200 SWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPL-AHI  278 (508)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl-~~~  278 (508)
                      ..+++....  +........+++++++|||||||.||+|.++|+++...+..+...+..  ..+..+|++++.+|+ +|.
T Consensus        72 ~~~~l~~~~--~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~  147 (437)
T 2y27_A           72 TKGDLRDSY--PFGMFAVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRA--AGARRGDKVHVSYGYGLFT  147 (437)
T ss_dssp             CHHHHHHTT--TTTTCSSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHH--TTCCTTCEEEECSCCSSSH
T ss_pred             CHHHHHhcC--CCccccCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHH--cCCCCCCEEEEcccccccc
Confidence            445554433  112334567889999999999999999999999998777655432211  267889999999998 677


Q ss_pred             HHHHHHHHHHHcCcEEEEecC-CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhh
Q 010536          279 YDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMK  357 (508)
Q Consensus       279 ~g~~~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (508)
                      .++...+.++..|+++++.+. +++.+++.++++++|+++++|+++..|++.........                    
T Consensus       148 ~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~--------------------  207 (437)
T 2y27_A          148 GGLGAHYGAERAGLTVIPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDP--------------------  207 (437)
T ss_dssp             HHHHHHHHHHHTTCEEECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCG--------------------
T ss_pred             cchHHHHHHHHcCCEEEeCCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCc--------------------
Confidence            777778889999999987764 99999999999999999999999999876543211000                    


Q ss_pred             cCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCcc-eeeccCCCCcccC
Q 010536          358 KGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSG-CFTSLADVFNMIG  436 (508)
Q Consensus       358 ~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~-~~~~~~~~~~~~~  436 (508)
                                     ++        +++|.+++||+++++++.+++++.+|+.+++.||+||+++. +........   .
T Consensus       208 ---------------~~--------~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~~~---~  261 (437)
T 2y27_A          208 ---------------VQ--------SSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLSEVMGPGVASECVETK---D  261 (437)
T ss_dssp             ---------------GG--------SSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEETTTTEEEEEECCTTTC---S
T ss_pred             ---------------cc--------CCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCCchhhcCCeeEEecCCCC---C
Confidence                           00        38999999999999999999999889999999999998543 333222111   1


Q ss_pred             ccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccccCCccccCcEEEEcC-CCC
Q 010536          437 TVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQP-MEL  508 (508)
Q Consensus       437 s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDlg~~d~-dG~  508 (508)
                      ..+.+.+++.++|+|.+++..++  .|+.|||+|+|.            +.+.|.++||+|||+|++|+ ||+
T Consensus       262 g~~~~~~~~~~~i~d~~~g~~~~--~g~~Gel~v~~~------------t~~~~~~~~y~TGDl~~~~~~~G~  320 (437)
T 2y27_A          262 GPTIWEDHFYPEIIDPETGEVLP--DGELGELVFTSL------------TKEALPIIRYRTRDLTRLLPGTAR  320 (437)
T ss_dssp             SCEECTTTEEEEEECTTTCCBCC--TTCCEEEEEEES------------SCSSSCCCSEEEEEEECEECCSSS
T ss_pred             ceeEccCceEEEEEcCCCCCCCC--CCCccEEEEecC------------CcCCchhheeecCCEEEEeCCCCC
Confidence            25667789999999933465555  458999999982            34456789999999999999 685

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=99.98  E-value=2.2e-31  Score=269.35  Aligned_cols=246  Identities=15%  Similarity=0.093  Sum_probs=186.8

Q ss_pred             eeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecCh-HH
Q 010536          199 FSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPL-AH  277 (508)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl-~~  277 (508)
                      ...+++....  +........+++++++|||||||.||+|.++|+++..........+..  ..+..+|++++.+|+ +|
T Consensus        73 ~~~~~l~~~~--p~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~--~~~~~~d~~l~~~~~~~~  148 (443)
T 2y4o_A           73 STKNDLRDNY--PFGLFAVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRA--AGGRPGDTLHNAFGYGLF  148 (443)
T ss_dssp             BCHHHHHTTT--TTTTCSSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHH--TTCCTTCEEEECSCCSSS
T ss_pred             CcHHHHHhhC--CCcccCCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHH--cCCCCCCEEEEeccCccc
Confidence            3455554433  112234467889999999999999999999999998776655442211  267889999999998 57


Q ss_pred             HHHHHHHHHHHHcCcEEEEecC-CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhh
Q 010536          278 IYDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNM  356 (508)
Q Consensus       278 ~~g~~~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (508)
                      ..++...+.++..|+++++.+. +++.+++.|+++++|+++++|+++..|++.........                   
T Consensus       149 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~-------------------  209 (443)
T 2y4o_A          149 TGGLGIHYGAERLGCMVVPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDP-------------------  209 (443)
T ss_dssp             HHHHHHHHHHHHHTCEEECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCG-------------------
T ss_pred             ccHHHHHHHHHHcCCEEEECCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCc-------------------
Confidence            7777777888999999988764 99999999999999999999999999876443221000                   


Q ss_pred             hcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCcc-eeeccCCCCccc
Q 010536          357 KKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSG-CFTSLADVFNMI  435 (508)
Q Consensus       357 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~-~~~~~~~~~~~~  435 (508)
                                      ++        +++|.+++||+++++++.+++++.+|+.+++.||+||+++. +....... . .
T Consensus       210 ----------------~~--------~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~~-~-~  263 (443)
T 2y4o_A          210 ----------------AE--------SSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLSEVMGPGVACECVET-K-D  263 (443)
T ss_dssp             ----------------GG--------SSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEEEETTTTEEEEEEECTTT-C-C
T ss_pred             ----------------cc--------CCceEEEECCCcCCHHHHHHHHHHhCcCEEeccCchhhcCCeEEeccCCC-C-C
Confidence                            01        38999999999999999999999889999999999998543 33322211 1 1


Q ss_pred             CccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccccCCccccCcEEEEcCC-CC
Q 010536          436 GTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQPM-EL  508 (508)
Q Consensus       436 ~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~~~gw~~TGDlg~~d~d-G~  508 (508)
                      + .+.+.+++.++|+|.+++..++  .|+.|||+|+|.            +.+.|.++||+|||+|++|++ |+
T Consensus       264 g-~~~~~~~~~~~i~d~~~g~~~~--~G~~Gel~v~~~------------t~~~~p~~~y~TGDl~~~~~~cG~  322 (443)
T 2y4o_A          264 G-PVIWEDHFYPEIIDPVTGEVLP--DGSQGELVFTSL------------TKEAMPVIRYRTRDLTALLPPTAR  322 (443)
T ss_dssp             S-EEECTTTEEEEEECTTTCCBCC--TTCCEEEEEEES------------SCSSSCCSSEEEEEEECEECCSSS
T ss_pred             c-eEEccCCeEEEEEcCCCCCCCC--CCCceEEEEeCC------------CcccChhheeecCCEEEEcCCCCC
Confidence            2 5557789999999933466555  458999999982            334567899999999999998 84

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*

Probab=99.96  E-value=5.3e-29  Score=245.61  Aligned_cols=228  Identities=14%  Similarity=0.112  Sum_probs=171.3

Q ss_pred             CCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecCh-HHHHHHHHHHHHHHcCcEEE
Q 010536          217 KKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPL-AHIYDQIIETHCIHKGCSIG  295 (508)
Q Consensus       217 ~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl-~~~~g~~~~~~~l~~G~~~~  295 (508)
                      ...+++++|+|||||||.||+|.++|+++...+......+..  .....+|++++.+|+ +|..++...+.++..|+.++
T Consensus        88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~--~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~  165 (369)
T 3hgu_A           88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQH--RPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFF  165 (369)
T ss_dssp             SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTT--STTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEE
T ss_pred             CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHh--hCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEE
Confidence            467889999999999999999999999999988865433211  266789999999999 99999988777799999444


Q ss_pred             EecCCHH-----------------------hHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHH
Q 010536          296 FWRGDVR-----------------------YLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYK  352 (508)
Q Consensus       296 ~~~~~~~-----------------------~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (508)
                      ...+++.                       .+++.++++++|++.++|+++..|++.                       
T Consensus       166 ~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~-----------------------  222 (369)
T 3hgu_A          166 SIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKR-----------------------  222 (369)
T ss_dssp             CCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTC-----------------------
T ss_pred             CccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhh-----------------------
Confidence            3344666                       788899999999999999999998642                       


Q ss_pred             hhhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHH-Hhc-CCceeeecccccCCcceeeccCC
Q 010536          353 LGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLR-VTS-GAPLTQGYGLTESCSGCFTSLAD  430 (508)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~-~~~-~~~v~~~YG~TE~~~~~~~~~~~  430 (508)
                                    ......+++        ++|.+++||+++++++.++++ +.| ++.+++.||+||+++++..... 
T Consensus       223 --------------~~~~~~~~~--------~lr~i~~gGe~l~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~-  279 (369)
T 3hgu_A          223 --------------PEVVLQMKQ--------SLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLI-  279 (369)
T ss_dssp             --------------HHHHHHHHH--------HCSEEEEESSCCCHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB-
T ss_pred             --------------hhhhccccC--------CeeEEEECCccCCHHHHHHHHHHhCCCcEEEcccCchhhhcceecccc-
Confidence                          112223333        899999999999999999999 899 8999999999998876532211 


Q ss_pred             CCcccCccccc------cCCeEEEEeecCCCCccCCCCCCCCeEEEecC---cccccccCCcccccccccCCccccCc
Q 010536          431 VFNMIGTVGVP------MTTVEARLESVPEMGYDALSSVPRGEICLRGN---TLFSGYYKRPDLTEEVIVDGWFHTGD  499 (508)
Q Consensus       431 ~~~~~~s~G~p------~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~---~v~~gY~~~~~~~~~~~~~gw~~TGD  499 (508)
                           .++|+|      +|+++++|+|.+++..++.  |+.|||+|++.   ....+|...+..+.....+||..+|+
T Consensus       280 -----~~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~--G~~GEl~vt~l~~~~~l~ry~tgD~~~~~~~~~g~~~d~~  350 (369)
T 3hgu_A          280 -----TSESQQVIYDSFSPFITYDVVDSITAQTVEY--GERGNVIVTHLSPWAFYPRVAERDTAIRLPGVSGFAGDRL  350 (369)
T ss_dssp             -----CTTCSSCEEECCTTTEEEEEECTTTCSBCCT--TCEEEEEEEEEETTEEEEEEEEEEEEEEECCSTTCSSCEE
T ss_pred             -----ccCCCcccccCCCCCeEEEEECCCCCcCCCC--CCceEEEEEEcCcccccccccCCceEEEecCCCCCcCccc
Confidence                 248999      9999999999336766654  49999999972   22445554444333333455555553

>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*

Probab=96.76  E-value=0.044  Score=55.62  Aligned_cols=31  Identities=23%  Similarity=0.304  Sum_probs=25.6

Q ss_pred             CCCCeEEEEecCCCC-CCcceeecchHHHHHH
Q 010536          218 KKTNISTIMYTSGTT-GEPKGVVLTNQAIVAE  248 (508)
Q Consensus       218 ~~~~~~~i~~TSGTT-G~pK~v~~sh~~~~~~  248 (508)
                      .++.+.+..-||||| |.+|-|.+|...+-..
T Consensus        91 ~~~pi~~F~~SSGTT~g~~K~IP~T~e~l~~~  122 (581)
T 4eql_A           91 SARTITGFLLSSGTSGGAQKMMPWNNKYLDNL  122 (581)
T ss_dssp             CSSCCCEEEEEEEEETTEEEEEEECHHHHHHH
T ss_pred             CCCCCCeEEeCCCCCCCCccccccCHHHHHHH
Confidence            456677899999999 7899999999877553

>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}

Probab=95.92  E-value=0.099  Score=53.21  Aligned_cols=31  Identities=26%  Similarity=0.312  Sum_probs=26.1

Q ss_pred             CCCCeEEEEecCCCC-CCcceeecchHHHHHH
Q 010536          218 KKTNISTIMYTSGTT-GEPKGVVLTNQAIVAE  248 (508)
Q Consensus       218 ~~~~~~~i~~TSGTT-G~pK~v~~sh~~~~~~  248 (508)
                      .++.+.++.-||||| |.||-|.+|...+-..
T Consensus        97 ~~~~i~~f~~SSGTT~gk~K~IP~t~~~l~~~  128 (609)
T 4b2g_A           97 SAHPISEFLTSSGTSAGERKLMPTIQEELDRR  128 (609)
T ss_dssp             CSSCCCEEEEEEEEETTEEEEEEECTTHHHHH
T ss_pred             CCCCCCeEEeCCCCCCCCceeeecCHHHHHHH
Confidence            556778899999999 8899999999876653

>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}

Probab=95.30  E-value=0.063  Score=54.40  Aligned_cols=30  Identities=27%  Similarity=0.448  Sum_probs=25.4

Q ss_pred             CCCCeEEEEecCCCC-CCcceeecchHHHHH
Q 010536          218 KKTNISTIMYTSGTT-GEPKGVVLTNQAIVA  247 (508)
Q Consensus       218 ~~~~~~~i~~TSGTT-G~pK~v~~sh~~~~~  247 (508)
                      .++.+.++.-||||| |.+|-|.+|...+-.
T Consensus        96 ~~~pi~~f~~SSGTT~gk~K~IP~T~~~l~~  126 (581)
T 4epl_A           96 TGHPVPAISLSSGTSQGRPKFIPFTDELMEN  126 (581)
T ss_dssp             SSSCCSEEEEEEEEETTEEEEEEECHHHHHH
T ss_pred             CCCCcceEEecCCCCCCCccccccCHHHHHH
Confidence            456677899999999 789999999987765

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=91.89  E-value=1.2  Score=43.70  Aligned_cols=125  Identities=16%  Similarity=0.078  Sum_probs=88.2

Q ss_pred             CCCCCceeeeeccCCCCC--CceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCc--HhHHHHHHHHHHcCCEEEe
Q 010536           56 IPNNQMLGGRKVSDGKVG--PYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNC--PEWIIAMEACNSQAITYVP  131 (508)
Q Consensus        56 ~p~~~a~~~~~~~~~~~~--~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~--~~~~~~~lA~~~~G~~~v~  131 (508)
                      .++.++++..+  .|.+|  -...+|.+.+...+..++..+...|+.++|++....+..  ...+..+++++..|+.+++
T Consensus        88 ~~~~~~~i~~T--SGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~  165 (437)
T 2y27_A           88 PQDRISRIHAS--SGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIP  165 (437)
T ss_dssp             CGGGCCEEEEC--CCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEEC
T ss_pred             ChhHeEEEEEC--CCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEe
Confidence            34566655441  23333  224689999998888888888888999999999988853  4445567888999999987


Q ss_pred             ccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCcc-----CCCCccEEEEecCC
Q 010536          132 LYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPR-----CCLYLKTIVSFANV  183 (508)
Q Consensus       132 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~  183 (508)
                      ++. .+.+.+...++..++.+++........+.+....     ....++.++.-...
T Consensus       166 ~~~-~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~  221 (437)
T 2y27_A          166 FGG-GQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEP  221 (437)
T ss_dssp             CCS-CCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSC
T ss_pred             CCC-CCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCcc
Confidence            765 4788999999999999999887766655443211     12456666665443

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=91.11  E-value=1.4  Score=43.35  Aligned_cols=125  Identities=16%  Similarity=0.061  Sum_probs=88.2

Q ss_pred             CCCCCceeeeeccCCCCCC--ceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCc--HhHHHHHHHHHHcCCEEEe
Q 010536           56 IPNNQMLGGRKVSDGKVGP--YVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNC--PEWIIAMEACNSQAITYVP  131 (508)
Q Consensus        56 ~p~~~a~~~~~~~~~~~~~--~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~--~~~~~~~lA~~~~G~~~v~  131 (508)
                      .++.++++..+  .|.+|.  ...+|.+.+...+..++..+...|+.++|++....+-+  ...+..+++++..|+.+++
T Consensus        90 ~~~~~~~i~~T--SGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~  167 (443)
T 2y4o_A           90 PREQVVRVHAS--SGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVP  167 (443)
T ss_dssp             CGGGCCEEEEE--CCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEEC
T ss_pred             ChhheEEEEEC--CCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEE
Confidence            34555654441  333332  24679999998888888888888999999999988863  4445567888899999888


Q ss_pred             ccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCcc-----CCCCccEEEEecCC
Q 010536          132 LYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPR-----CCLYLKTIVSFANV  183 (508)
Q Consensus       132 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~  183 (508)
                      ++.. ..+.+...++..++.+++........+.+....     ....++.++.-...
T Consensus       168 ~~~~-~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~  223 (443)
T 2y4o_A          168 MSGG-QTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEP  223 (443)
T ss_dssp             CCSC-CHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSC
T ss_pred             CCCC-CHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCc
Confidence            7764 788999999999999999887766655443211     12456666665544

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=90.34  E-value=1.6  Score=42.83  Aligned_cols=124  Identities=10%  Similarity=-0.021  Sum_probs=89.1

Q ss_pred             CCCceeeeeccCCCCC--CceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCC--cHhHHHHHHHHHHcCCEEEecc
Q 010536           58 NNQMLGGRKVSDGKVG--PYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSN--CPEWIIAMEACNSQAITYVPLY  133 (508)
Q Consensus        58 ~~~a~~~~~~~~~~~~--~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n--~~~~~~~~lA~~~~G~~~v~l~  133 (508)
                      +.++++..+  .|.+|  -...+|.+.+...+..++..+...|+.++|++....+-  ....+..+++++..|+.+++.+
T Consensus        86 ~~~a~i~~T--SGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~  163 (436)
T 3qov_A           86 RDGVRIHSS--SGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAA  163 (436)
T ss_dssp             HHEEEEEEC--SCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCC
T ss_pred             CCeEEEEEC--CCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCC
Confidence            455655441  23333  23468999999999888888888999999999998875  3445567788899999998776


Q ss_pred             CCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCc-----cCCCCccEEEEecCCC
Q 010536          134 DTLGANAVEFIINHAEVSIAFVQENKIPSILSCLP-----RCCLYLKTIVSFANVS  184 (508)
Q Consensus       134 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~  184 (508)
                      +. .++.+...++..++.+++........+.+...     .....++.++.-....
T Consensus       164 ~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l  218 (436)
T 3qov_A          164 AG-NSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPH  218 (436)
T ss_dssp             SC-CHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCC
T ss_pred             CC-CHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcC
Confidence            54 77889999999999999988776665544321     1135677777665543

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=85.52  E-value=12  Score=37.09  Aligned_cols=122  Identities=11%  Similarity=-0.010  Sum_probs=85.1

Q ss_pred             CCCCCceeeeeccCCCCC--CceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHh-HHHHHHHHHHcCCEEEec
Q 010536           56 IPNNQMLGGRKVSDGKVG--PYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPE-WIIAMEACNSQAITYVPL  132 (508)
Q Consensus        56 ~p~~~a~~~~~~~~~~~~--~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~-~~~~~lA~~~~G~~~v~l  132 (508)
                      .|+.+|++..+  .|.+|  -...+|.+.+...+..+..   ..++.++|++...+|-.-. .+..+++++..|+.++..
T Consensus       161 ~~~d~a~i~~T--SGTTG~PKgv~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~  235 (501)
T 3ipl_A          161 NLDDIASIMFT--SGTTGPQKAVPQTFRNHYASAIGCKE---SLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIV  235 (501)
T ss_dssp             CTTSEEEEEEC--CTTTSCCCEEEEEHHHHHHHHHHHHH---HTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEC
T ss_pred             CCCCeEEEEEC--CCCCCCCcEEEEeHHHHHHHHHHHHH---hhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeC
Confidence            46777776652  22222  2246899988877666544   4588999999988887533 234467788899998877


Q ss_pred             cCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCC
Q 010536          133 YDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANV  183 (508)
Q Consensus       133 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (508)
                      + ..+++.+...++..++..++........+.+........++.++.-...
T Consensus       236 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~lr~i~~gG~~  285 (501)
T 3ipl_A          236 D-KFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEPYNLQKILLGGAK  285 (501)
T ss_dssp             S-SCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSCTTCCEEEECSSC
T ss_pred             C-CCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCcCcccEEEEeCCC
Confidence            6 4788999999999999999998877776655443333356666665443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	508
d1pg4a_	643	e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en	2e-57
d1v25a_	534	e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0	4e-51
d1ry2a_	640	e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast	2e-50
d1lcia_	541	e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali	3e-44
d1amua_	514	e.23.1.1 (A:) Phenylalanine activating domain of g	4e-30
d3cw9a1	503	e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc	1e-28
d1mdba_	536	e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B	4e-24

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

 Score =  199 bits (508), Expect = 2e-57
 Identities = 62/455 (13%), Positives = 132/455 (29%), Gaps = 73/455 (16%)

Query: 73  GPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPL 132
                ++Y+E++    RF + +   G+  GD   IY    PE  +AM AC      +  +
Sbjct: 99  SQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVI 158

Query: 133 YDTLGANAVEFIINHAEVSIAFVQE------NKIPSILSCLPRCCLYLKTIVSFANVSSS 186
           +      AV   I  +   +    +        IP   +          T V    V   
Sbjct: 159 FGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKR 218

Query: 187 QKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIV 246
              + +        W + ++  + + +       +   I+YTSG+TG+PKGV+ T    +
Sbjct: 219 TGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYL 278

Query: 247 AEVL-SVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETH-CIHKGCSIGFWRG----- 299
                +   +F          D Y+    +  +       +  +  G +   + G     
Sbjct: 279 VYAATTFKYVFDYH-----PGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWP 333

Query: 300 DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKG 359
               + + + + +  +    P     +                                 
Sbjct: 334 TPARMCQVVDKHQVNILYTAPTAIRALM-------------------------------- 361

Query: 360 MPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHV-EEFLRVT--SGAPLTQGYG 416
               +    ++    S +R         + S   P+     E + +       P+   + 
Sbjct: 362 ---AEGDKAIEGTDRSSLR--------ILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWW 410

Query: 417 LTESCSGCFTSLADVFNM-IGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGN-- 473
            TE+     T L     +  G+   P   V+  L  V   G+    +   G + +  +  
Sbjct: 411 QTETGGFMITPLPGAIELKAGSATRPFFGVQPAL--VDNEGHPQEGATE-GNLVITDSWP 467

Query: 474 TLFSGYYKRPDLTEEVIV---DGWFHTGDIGEWQP 505
                 +   +  E+         + +GD      
Sbjct: 468 GQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDE 502

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

 Score =  180 bits (457), Expect = 4e-51
 Identities = 94/473 (19%), Positives = 152/473 (32%), Gaps = 82/473 (17%)

Query: 46  WQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRC 105
           W F   +A      ++     VS    G     TY EVY  A R    +R+ GV  GDR 
Sbjct: 14  WDFLERAAALFGRKEV-----VSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRV 68

Query: 106 GIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILS 165
              G N    + A  A              L    + +I+NHAE  +     N +P + +
Sbjct: 69  ATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEA 128

Query: 166 CLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTI 225
                      +V                  +   +  + +    + +     +     +
Sbjct: 129 IRGELKTVQHFVVMDEK--------------APEGYLAYEEALGEEADPVRVPERAACGM 174

Query: 226 MYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIET 285
            YT+GTTG PKGVV +++A+V   L+   +        SE+D     +P+ H+    +  
Sbjct: 175 AYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTA---LSEKDVVLPVVPMFHVNAWCLPY 231

Query: 286 HCIHKGCSIGF--WRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKK 343
                G        R D   L+E       T  +GVP V+  +                 
Sbjct: 232 AATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLAL----------------- 274

Query: 344 LFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFL 403
                                         + +        L+ ++ G +  P  +    
Sbjct: 275 ----------------------------ADYLESTGHRLKTLRRLVVGGSAAPRSLIARF 306

Query: 404 RVTSGAPLTQGYGLTESCSGCFT----------SLADVFNMIGTVGVPMTTVEARLESVP 453
               G  + QGYGLTE+                S  +   +    G+P+  V  R+    
Sbjct: 307 ERM-GVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD-E 364

Query: 454 EMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVIV-DGWFHTGDIGEWQP 505
           E           GE+ L+G  +  GYY   + T   +  DG+F TGDI  W  
Sbjct: 365 EGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDE 417

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  180 bits (457), Expect = 2e-50
 Identities = 73/450 (16%), Positives = 139/450 (30%), Gaps = 70/450 (15%)

Query: 78  LTYQEVYDAAIRFGSAMR-SRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTL 136
           +TY+E+ +   +    +  S GV  GD   +Y    PE II + A +     +  ++   
Sbjct: 91  ITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGF 150

Query: 137 GANAVEFIINHAEVSIAFVQEN-----KIPSILSCLPRCCLYLKTIVSFANVSSSQKKEA 191
            +N++   IN  +  +    +      K+      +         +        +     
Sbjct: 151 SSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSV 210

Query: 192 EELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLS 251
                    W    +         P    +   ++YTSG+TG PKGV  +    +   L 
Sbjct: 211 AFHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALL 270

Query: 252 VDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETH-CIHKGCSIGFWRG-----DVRYLM 305
             +    T     +ED +F+   +  I       +  +  GC+   + G     +     
Sbjct: 271 TMRYTFDT----HQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYW 326

Query: 306 EDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKA 365
           + I E K T F   P     +                                   +   
Sbjct: 327 DIIDEHKVTQFYVAPTALRLL-----------------------------------KRAG 351

Query: 366 APLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG---APLTQGYGLTESCS 422
              +++     +R         + S   P+   V E+     G    P+   Y  TES S
Sbjct: 352 DSYIENHSLKSLR--------CLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGS 403

Query: 423 GCFTSLADVFNMI--GTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGN--TLFSG 478
              T LA     +  G+   P   ++A +   P  G +  +S   G + ++    +    
Sbjct: 404 HLVTPLAGGVTPMKPGSASFPFFGIDAVVLD-PNTGEELNTSHAEGVLAVKAAWPSFART 462

Query: 479 YYKRPDLTEEVIV---DGWFHTGDIGEWQP 505
            +K  D   +  +    G++ TGD      
Sbjct: 463 IWKNHDRYLDTYLNPYPGYYFTGDGAAKDK 492

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

 Score =  161 bits (408), Expect = 3e-44
 Identities = 81/436 (18%), Positives = 148/436 (33%), Gaps = 64/436 (14%)

Query: 78  LTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLG 137
           +TY E ++ ++R   AM+  G+N   R  +   N  ++ + +       +   P  D   
Sbjct: 48  ITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYN 107

Query: 138 ANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVS 197
              +   +N ++ ++ FV +  +  IL+   +  +  K I+  +       +        
Sbjct: 108 ERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTF--- 164

Query: 198 CFSWEEFLQLGTLDCELPPK---KKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQ 254
                  L  G  + +  P+   +   I+ IM +SG+TG PKGV L ++           
Sbjct: 165 ---VTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARD 221

Query: 255 MFVVTGKVCSEEDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRGDVRYLMEDIQELKPT 314
                  +                    +  + I     +  +R +    +  +Q+ K  
Sbjct: 222 PIFGNQIIPDTAILSVVPFHHGFGMFTTL-GYLICGFRVVLMYRFEEELFLRSLQDYKIQ 280

Query: 315 MFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVF 374
               VP ++                                          + L+D    
Sbjct: 281 SALLVPTLFSFFA-------------------------------------KSTLIDKYDL 303

Query: 375 SKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNM 434
           S + E   G       GA       E   +      + QGYGLTE  +       +  + 
Sbjct: 304 SNLHEIASG-------GAPLSKEVGEAVAKRFHLPGIRQGYGLTE-TTSAILITPEGDDK 355

Query: 435 IGTVGVPMTTVEARLESVPEMGYDALSSVP---RGEICLRGNTLFSGYYKRPDLTEEVIV 491
            G VG  +   EA++     +  D   ++    RGE+C+RG  + SGY   P+ T  +I 
Sbjct: 356 PGAVGKVVPFFEAKV-----VDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALID 410

Query: 492 -DGWFHTGDIGEWQPM 506
            DGW H+GDI  W   
Sbjct: 411 KDGWLHSGDIAYWDED 426

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

 Score =  121 bits (303), Expect = 4e-30
 Identities = 80/470 (17%), Positives = 151/470 (32%), Gaps = 104/470 (22%)

Query: 47  QFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCG 106
           Q F +   + PNN  +    V + +      LTY E+   A +       +G+      G
Sbjct: 27  QLFEEQVSKRPNNVAI----VCENEQ-----LTYHELNVKANQLARIFIEKGIGKDTLVG 77

Query: 107 IYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSC 166
           I      +  I + A       YVP+        +++I++ ++  +   Q++ +  I   
Sbjct: 78  IMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLI--- 134

Query: 167 LPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIM 226
                                    +  G      E+ +++        P K T+++ ++
Sbjct: 135 ----------------------HNIQFNGQVEIFEEDTIKIREGTNLHVPSKSTDLAYVI 172

Query: 227 YTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIETH 286
           YTSGTTG PKG +L ++ I        ++F       +E+D    F  ++          
Sbjct: 173 YTSGTTGNPKGTMLEHKGIS-----NLKVFFENSLNVTEKDRIGQFASISFDASVWEMFM 227

Query: 287 CIHKGCSI----GFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSK 342
            +  G S+         D     + I + + T+ +  P                      
Sbjct: 228 ALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVV------------------ 269

Query: 343 KLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEF 402
                                +    + +L+                +G+A  P  V ++
Sbjct: 270 -----------------HLDPERILSIQTLIT---------------AGSATSPSLVNKW 297

Query: 403 LRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSS 462
                       YG TE+     T +A    +  +V +       ++  V E        
Sbjct: 298 KE---KVTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVG 354

Query: 463 VPRGEICLRGNTLFSGYYKRPDLTEEVIV-------DGWFHTGDIGEWQP 505
              GE+C+ G  L  GY+KRP+LT +  V       +  + TGD   W  
Sbjct: 355 EA-GELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLS 403

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

 Score =  116 bits (290), Expect = 1e-28
 Identities = 76/468 (16%), Positives = 137/468 (29%), Gaps = 81/468 (17%)

Query: 42  LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNP 101
           +++  +    +A R P++  L     + G       LT+ E+        + + + G+ P
Sbjct: 1   MQTVNEMLRRAATRAPDHCAL--AVPARGL-----RLTHAELRARVEAVAARLHADGLRP 53

Query: 102 GDRCGIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP 161
             R  +   N  + +IA+ A +        L   L +  +  +I   E++ A +   +  
Sbjct: 54  QQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGR-- 111

Query: 162 SILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTN 221
            +   + +     + I     V   +                         E P ++   
Sbjct: 112 QVADAIFQSGSGARIIFLGDLVRDGEPYSYGP-----------------PIEDPQREPAQ 154

Query: 222 ISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQ 281
            + I YTSGTTG PK  ++  +A  + VL +              +     +PL H+   
Sbjct: 155 PAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVG---LRHGRHNVVLGLMPLYHVVGF 211

Query: 282 IIETHCIHKGCSIGFWRGDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALS 341
                        G +     +   D  +L                              
Sbjct: 212 FAVLVAALALD--GTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLD------------- 256

Query: 342 KKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEE 401
                                      L +             L+ +    A +P  V E
Sbjct: 257 --------------------------ALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLE 290

Query: 402 FLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALS 461
            +           YG TE+ +  +          GT   P    E R   +  +G     
Sbjct: 291 TVHQHLPGEKVNIYGTTEAMNSLYM----RQPKTGTEMAPGFFSEVR---IVRIGGGVDE 343

Query: 462 SVPRGE----ICLRGNTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQP 505
            V  GE    I    ++ F GY  +P  T E + DGW+ T D+  W P
Sbjct: 344 IVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTP 391

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

 Score =  103 bits (256), Expect = 4e-24
 Identities = 62/462 (13%), Positives = 125/462 (27%), Gaps = 72/462 (15%)

Query: 46  WQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRC 105
                D A +  +   +                +Y+E+   A R  +  +  G+   DR 
Sbjct: 28  GDLLRDRAAKYGDRIAI----TCGNTH-----WSYRELDTRADRLAAGFQKLGIQQKDRV 78

Query: 106 GIYGSNCPEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILS 165
            +   N  E+   + A        V    +  ++ + +    AE +   + +        
Sbjct: 79  VVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYR 138

Query: 166 CLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTI 225
            L R        +           +   +      +     L T   +LP  K ++++ +
Sbjct: 139 SLARQVQSKLPTL-----------KNIIVAGEAEEFLPLEDLHTEPVKLPEVKSSDVAFL 187

Query: 226 MYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIYDQIIET 285
             + G+TG  K +  T+   +     + +   V     S        +   +        
Sbjct: 188 QLSGGSTGLSKLIPRTHDDYIYS---LKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVL 244

Query: 286 HCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKL 344
             ++ G  +              I+  K T+ + VP +                      
Sbjct: 245 GVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMD---------------- 288

Query: 345 FEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLR 404
                                         +  R      LQ +  G A         ++
Sbjct: 289 -----------------------------AASSRRDDLSSLQVLQVGGAKFSAEAARRVK 319

Query: 405 VTSGAPLTQGYGLTESCSGCFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVP 464
              G  L Q +G+ E              ++ T G PM+  +       +   D +    
Sbjct: 320 AVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESR-VWDDHDRD-VKPGE 377

Query: 465 RGEICLRGNTLFSGYYKRPDLTEEVIVD-GWFHTGDIGEWQP 505
            G +  RG     GYYK  +       + G++ TGDI     
Sbjct: 378 TGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTR 419

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	508
d1pg4a_	643	Acetyl-CoA synthetase {Salmonella enterica [TaxId:	100.0
d1v25a_	534	Long chain fatty acid-CoA ligase TT0168 {Thermus t	100.0
d1ry2a_	640	Acetyl-CoA synthetase {Baker's yeast (Saccharomyce	100.0
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	100.0
d1amua_	514	Phenylalanine activating domain of gramicidin synt	100.0
d1mdba_	536	Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil	100.0
d3cw9a1	503	4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId	100.0

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=100.00  E-value=1.6e-58  Score=485.41  Aligned_cols=411  Identities=14%  Similarity=0.186  Sum_probs=329.2

Q ss_pred             CCCCCHH-HHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHH
Q 010536           40 AGLESPW-QFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIA  118 (508)
Q Consensus        40 ~~~~ti~-~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~  118 (508)
                      .+..|+. ++|+++++.+||++|+++.   ....+..+++||+||.++++++|++|+++||++||+|+++++|+++++++
T Consensus        68 ~~~~N~~~n~ldrh~~~~~d~~Ali~~---~~~~~~~~~~TY~eL~~~v~~~A~~L~~~Gv~~Gd~V~i~~~n~~e~iv~  144 (643)
T d1pg4a_          68 DGTLNLAANCLDRHLQENGDRTAIIWE---GDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVA  144 (643)
T ss_dssp             TCEECHHHHHTGGGHHHHTTSEEEEEE---CSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHH
T ss_pred             CChhhHHHHHHHHHHHhCCCCEEEEEE---ecCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecccchHHHHH
Confidence            4445554 5677888999999999987   55556668999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChh---------hHhhcC-ccCCCCccEEEEecCCCchhh
Q 010536          119 MEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP---------SILSCL-PRCCLYLKTIVSFANVSSSQK  188 (508)
Q Consensus       119 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~~~~~-~~~~~~~~~~~~~~~~~~~~~  188 (508)
                      +|||+++|++++|++|.++.+++.+++++++++++|+++....         .+...+ ......+..++.+........
T Consensus       145 ~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~  224 (643)
T d1pg4a_         145 MLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDID  224 (643)
T ss_dssp             HHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCC
T ss_pred             HHHHHHhCeEEEecCCCCCHHHHHHHHHhcCCCEEEEcchhhhhccccchhhhHHHHHhccccccceEEEEeccCCcccc
Confidence            9999999999999999999999999999999999999875321         111111 123355667777655432110


Q ss_pred             hhhhhcCceeeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhh-hhhhhhhccccCCCCc
Q 010536          189 KEAEELGVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLS-VDQMFVVTGKVCSEED  267 (508)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~-~~~~~~~~~~~~~~~~  267 (508)
                          ........+.+..........+...+.+++++|+|||||||.||||+++|++++..... ....+     .+.++|
T Consensus       225 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~-----~~~~~d  295 (643)
T d1pg4a_         225 ----WQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVF-----DYHPGD  295 (643)
T ss_dssp             ----CCBTTEEEHHHHHTTSCSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHT-----TCCTTC
T ss_pred             ----cccccchhhhhhhcccCcccCCCCCCCCCeEEEEeCCCcccCCCEEEEccHHHHHHHHHHHHHhh-----CCCCCC
Confidence                00112334555555444445556668899999999999999999999999997765444 33344     778999


Q ss_pred             EEEEecChHHHHHHHH-HHHHHHcCcEEEEecC-----CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhH
Q 010536          268 TYFSFLPLAHIYDQII-ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALS  341 (508)
Q Consensus       268 ~~l~~~pl~~~~g~~~-~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~  341 (508)
                      ++++.+|++|.+++.. ++.+|+.|++++++++     ++..+++.++++++|+++++|++++.|++...          
T Consensus       296 ~~~~~~p~~~~~g~~~~l~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~----------  365 (643)
T d1pg4a_         296 IYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGD----------  365 (643)
T ss_dssp             EEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGG----------
T ss_pred             EEEEeCChHHHHHHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHHCCcEEEehHHHHHHHHhCcc----------
Confidence            9999999999999875 6688999999999753     78899999999999999999999999865211          


Q ss_pred             HHHHHHHHHHHhhhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcC---Cceeeecccc
Q 010536          342 KKLFEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG---APLTQGYGLT  418 (508)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~---~~v~~~YG~T  418 (508)
                                               ...+..++        ++||.+++||+++++++.+++.+.++   +.+++.||+|
T Consensus       366 -------------------------~~~~~~dl--------~sLr~i~~~G~pl~~~~~~~~~~~~g~~~~~i~~~yG~T  412 (643)
T d1pg4a_         366 -------------------------KAIEGTDR--------SSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQT  412 (643)
T ss_dssp             -------------------------GGTTTCCC--------TTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCG
T ss_pred             -------------------------hhccccCC--------CceEEEEEEeCCCCHHHHHHHHHHhCCCCceEEEeechh
Confidence                                     11122223        38999999999999999999999884   6799999999


Q ss_pred             cCCcceeeccCCC-CcccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEec--CcccccccCCcccccccc---cC
Q 010536          419 ESCSGCFTSLADV-FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRG--NTLFSGYYKRPDLTEEVI---VD  492 (508)
Q Consensus       419 E~~~~~~~~~~~~-~~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g--~~v~~gY~~~~~~~~~~~---~~  492 (508)
                      |++++++...+.. ..+.+++|+|++|++++|+| ++|..++.+  +.|||+|+|  |+++.||+++++.+.+.+   .+
T Consensus       413 E~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~ivd-~~g~~~~~g--~~Gel~v~~~~p~~~~~~~~~~~~~~~~~~~~~~  489 (643)
T d1pg4a_         413 ETGGFMITPLPGAIELKAGSATRPFFGVQPALVD-NEGHPQEGA--TEGNLVITDSWPGQARTLFGDHERFEQTYFSTFK  489 (643)
T ss_dssp             GGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEEC-TTCCBCCSS--EEEEEEECSCCTTCCCEETTCHHHHHHHHHSSST
T ss_pred             hccceEEecCCCccCCCCCccccccCCCEEEEEC-CCCCCCCCC--ceEEEEEecCCCcccccccCChhhchhhhcccCC
Confidence            9998776554433 44568999999999999999 888776654  899999999  578899999998777665   58


Q ss_pred             CccccCcEEEEcCCCC
Q 010536          493 GWFHTGDIGEWQPMEL  508 (508)
Q Consensus       493 gw~~TGDlg~~d~dG~  508 (508)
                      |||+|||+|++|+||+
T Consensus       490 g~~~TGDl~~~d~dG~  505 (643)
T d1pg4a_         490 NMYFSGDGARRDEDGY  505 (643)
T ss_dssp             TSEEEEEEEEECTTSC
T ss_pred             CeEEcCCEEEECCCce
Confidence            9999999999999996

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.3e-56  Score=463.53  Aligned_cols=400  Identities=23%  Similarity=0.334  Sum_probs=331.2

Q ss_pred             CCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHH
Q 010536           40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM  119 (508)
Q Consensus        40 ~~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~  119 (508)
                      +...|++++|+++|+++||++|+++.   +  ++.++.+||+||.++++++|++|.++|+++||+|+++++|++++++++
T Consensus         8 ~~~~~l~~~l~~~a~~~pd~~av~~~---~--~g~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~n~~e~~~~~   82 (534)
T d1v25a_           8 DEELNLWDFLERAAALFGRKEVVSRL---H--TGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAY   82 (534)
T ss_dssp             CCCCCTHHHHHHHHHHSTTCEEEEEC---T--TSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHcCCCeEEEEe---c--CCceEEEcHHHHHHHHHHHHHHHHHCCcCCCCEEEEEeCCCHHHHHHH
Confidence            45678999999999999999999876   3  345578999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCceee
Q 010536          120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCF  199 (508)
Q Consensus       120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (508)
                      |||+++|++++|++|.++.+++.++++.+++++++++............ ....++..+.........          ..
T Consensus        83 lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----------~~  151 (534)
T d1v25a_          83 FAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRG-ELKTVQHFVVMDEKAPEG----------YL  151 (534)
T ss_dssp             HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGG-GCSSCCEEEESSSCCCTT----------CE
T ss_pred             HHHHHhCcEEEecCCCCCHHHHHHHHHhhccccccccchhhhhHHHHhh-cccccceeEEeecccccc----------cc
Confidence            9999999999999999999999999999999999999887776654433 334555555544332211          11


Q ss_pred             eHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHH
Q 010536          200 SWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIY  279 (508)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~  279 (508)
                      .....   ...........++++++++|||||||.||+|.++|.+++..........   .......+++++.+|++|.+
T Consensus       152 ~~~~~---~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~---~~~~~~~d~~~~~~p~~~~~  225 (534)
T d1v25a_         152 AYEEA---LGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVD---GTALSEKDVVLPVVPMFHVN  225 (534)
T ss_dssp             EHHHH---CCSCCCCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTT---TTCCCTTCEEEECSCTTSHH
T ss_pred             ccccc---ccccccccccccCCcEEEEEecCCCCCccccccccchhhhhhhhhhhhc---ccccccccccccccchhhhc
Confidence            11111   1112234455678899999999999999999999999987665543322   23667889999999999999


Q ss_pred             HHHHHHHHHHcCcEEEEec--CCHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhhhh
Q 010536          280 DQIIETHCIHKGCSIGFWR--GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGNMK  357 (508)
Q Consensus       280 g~~~~~~~l~~G~~~~~~~--~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (508)
                      ++...+..+..|++.++..  +++..++..+.++++|++.++|.++..++.........                     
T Consensus       226 ~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~~---------------------  284 (534)
T d1v25a_         226 AWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHR---------------------  284 (534)
T ss_dssp             HHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCC---------------------
T ss_pred             cccccceeeeecceeeeccccccccccchhhhhccccccccCchhhhhhhhhhcccccc---------------------
Confidence            9998888888888777765  38999999999999999999999999987643322111                     


Q ss_pred             cCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCcceeeccCCCC-----
Q 010536          358 KGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVF-----  432 (508)
Q Consensus       358 ~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~-----  432 (508)
                                      +        ++||.+++||+++++++.+++++. +..+++.||+||++.++........     
T Consensus       285 ----------------~--------~~lr~~~~gG~~~~~~~~~~~~~~-~~~i~~~yG~te~~~~~~~~~~~~~~~~~~  339 (534)
T d1v25a_         285 ----------------L--------KTLRRLVVGGSAAPRSLIARFERM-GVEVRQGYGLTETSPVVVQNFVKSHLESLS  339 (534)
T ss_dssp             ----------------C--------SSCCEEEECSSCCCHHHHHHHHHT-TCEEEEEEECGGGSSEEEECCCCGGGTTSC
T ss_pred             ----------------c--------cceeEEEEecCCCCHHHHHHHHHh-CCeeeeeccccccccceeecccCccccccC
Confidence                            1        389999999999999999999864 8999999999999998876544321     


Q ss_pred             -----cccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccc-cCCccccCcEEEEcCC
Q 010536          433 -----NMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGDIGEWQPM  506 (508)
Q Consensus       433 -----~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~-~~gw~~TGDlg~~d~d  506 (508)
                           ...+++|+|+||++++|+| ++++.++.+.++.|||+|+|++++.||+++++.+.+.| .||||+|||+|++|+|
T Consensus       340 ~~~~~~~~~~~G~p~~g~~~~i~d-~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~t~~~~~~dg~~~TGDlg~~~~~  418 (534)
T d1v25a_         340 EEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEE  418 (534)
T ss_dssp             HHHHHHHHTSCBEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECTT
T ss_pred             ccccccccccceeccCCcEEEEEC-CCCCCCCCCCCeeEEEEEcCCcccceecCChhhhhhhcccCCCCccCceeEECCC
Confidence                 2246899999999999999 99999988878999999999999999999999998888 8899999999999999


Q ss_pred             CC
Q 010536          507 EL  508 (508)
Q Consensus       507 G~  508 (508)
                      |+
T Consensus       419 G~  420 (534)
T d1v25a_         419 GY  420 (534)
T ss_dssp             CC
T ss_pred             cc
Confidence            95

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.8e-56  Score=471.92  Aligned_cols=411  Identities=19%  Similarity=0.240  Sum_probs=324.0

Q ss_pred             CHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHH-hCCCCCCCEEEEEcCCcHhHHHHHHHH
Q 010536           44 SPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMR-SRGVNPGDRCGIYGSNCPEWIIAMEAC  122 (508)
Q Consensus        44 ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~-~~gv~~gd~Vai~~~n~~~~~~~~lA~  122 (508)
                      ...++|+++|+++||++|+++.   ..+.+..+++||+||.++++++|++|+ ++||++||+|+++++|+++++++++||
T Consensus        60 ~~~n~ldr~a~~~pd~~Ali~~---~~~~g~~~~~Ty~eL~~~v~~~A~~L~~~~Gv~~Gd~V~i~~~n~~e~~~~~lA~  136 (640)
T d1ry2a_          60 ACYNCVDRHALKTPNKKAIIFE---GDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAI  136 (640)
T ss_dssp             HHHHHTHHHHTTCTTSEEEEEE---CSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhCCCCEEEEEE---ecCCCCeeEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHh
Confidence            3477899999999999999987   555566689999999999999999997 679999999999999999999999999


Q ss_pred             HHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChh--------hHhhcCccCCCCccEEEEecCCCchhhhhhhhc
Q 010536          123 NSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIP--------SILSCLPRCCLYLKTIVSFANVSSSQKKEAEEL  194 (508)
Q Consensus       123 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (508)
                      +++|++++|+++.++.+++.++++++++++++++.....        ............+..............   ...
T Consensus       137 ~~~Gav~vpi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  213 (640)
T d1ry2a_         137 SRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSV---AFH  213 (640)
T ss_dssp             HHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSC---CCC
T ss_pred             ccCceEeecCCCCCCHHHHHHHHHhhhccccccchhhhhccchhhhHHHHHhhhhhhcccceeeeecccccccc---ccc
Confidence            999999999999999999999999999999999875332        111111222234444444433221100   000


Q ss_pred             CceeeeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecC
Q 010536          195 GVSCFSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLP  274 (508)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p  274 (508)
                      ......+..............+...+++++|+|||||||.||||+++|++++.+........    ..+..+|++++.+|
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~h~~~~~~~~~~~~~~----~~~~~~d~~l~~~p  289 (640)
T d1ry2a_         214 APRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYT----FDTHQEDVFFTAGD  289 (640)
T ss_dssp             SSSEEEHHHHHTTSCSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHH----SCCCSSCEEEECSC
T ss_pred             ccccccccccccccccccccCCcccccCCEEEECCCCCCCCcceeeccccHHHHHHHHHHhh----cCCCcccceeeccc
Confidence            11122333333333334445556778999999999999999999999999887765544322    26789999999999


Q ss_pred             hHHHHHHHH-HHHHHHcCcEEEEecC-----CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHH
Q 010536          275 LAHIYDQII-ETHCIHKGCSIGFWRG-----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFA  348 (508)
Q Consensus       275 l~~~~g~~~-~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~  348 (508)
                      ++|.++... ++.+++.|+++++++.     ++..+++.++++++|+++++|++++.|.+..                  
T Consensus       290 l~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~------------------  351 (640)
T d1ry2a_         290 IGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAG------------------  351 (640)
T ss_dssp             TTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSC------------------
T ss_pred             hhhhhhHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHhCccEEEcChHHHHHHHhcc------------------
Confidence            999999874 7788999999888753     7889999999999999999999998875311                  


Q ss_pred             HHHHhhhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcC---CceeeecccccCCccee
Q 010536          349 YNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSG---APLTQGYGLTESCSGCF  425 (508)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~---~~v~~~YG~TE~~~~~~  425 (508)
                                       ....+..+++        +||.+++||+++++++.+++.+.+|   ..+++.||+||++..+.
T Consensus       352 -----------------~~~~~~~~l~--------sLr~v~~gG~~l~~~~~~~~~~~~g~~~~~i~~~yg~te~~~~~~  406 (640)
T d1ry2a_         352 -----------------DSYIENHSLK--------SLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLV  406 (640)
T ss_dssp             -----------------TTSSSSCCCT--------TCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSE
T ss_pred             -----------------ccccccCCCC--------ceEEEEEecccCcHHHHHHHHHhcCCCcceEEeeecccccccccc
Confidence                             1111122232        8999999999999999999999885   56999999999988776


Q ss_pred             eccCCC--CcccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEec--CcccccccCCcccccccc---cCCccccC
Q 010536          426 TSLADV--FNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRG--NTLFSGYYKRPDLTEEVI---VDGWFHTG  498 (508)
Q Consensus       426 ~~~~~~--~~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g--~~v~~gY~~~~~~~~~~~---~~gw~~TG  498 (508)
                      ......  ..+++++|+|+||++++|+| ++++....+.++.|||+++|  |+++.||+++++.+.+.|   .+|||+||
T Consensus       407 ~~~~~~~~~~~~gs~G~p~~g~~~~i~d-~~~~~~~~~~~~~Gel~i~~~~p~~~~gy~~~~e~t~~~~~~~~~gw~~TG  485 (640)
T d1ry2a_         407 TPLAGGVTPMKPGSASFPFFGIDAVVLD-PNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTG  485 (640)
T ss_dssp             ECCTTTCCCCCTTCCCEECTTCCEEEEC-SSSTTCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEE
T ss_pred             cccCCCcCCCCCcccccccCCceEEEEe-CCCCcccCCCCceEEEEEEecCCCcccccccCHHHHHhhhccCCCCeEEcC
Confidence            654433  34558999999999999999 77776666566789999998  689999999999988877   45899999


Q ss_pred             cEEEEcCCCC
Q 010536          499 DIGEWQPMEL  508 (508)
Q Consensus       499 Dlg~~d~dG~  508 (508)
                      |+|++|+||+
T Consensus       486 Dlg~~d~dG~  495 (640)
T d1ry2a_         486 DGAAKDKDGY  495 (640)
T ss_dssp             EEEEECTTCC
T ss_pred             CceeECCCCC
Confidence            9999999996

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=100.00  E-value=2.2e-55  Score=455.02  Aligned_cols=406  Identities=22%  Similarity=0.323  Sum_probs=320.7

Q ss_pred             CCCCCCCCCHHHHHHHHHHhC---CCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCc
Q 010536           36 LESPAGLESPWQFFCDSAKRI---PNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNC  112 (508)
Q Consensus        36 ~~~~~~~~ti~~~l~~~a~~~---p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~  112 (508)
                      |..|....++.++|.++++++   |+++|+++.   ...    +.+||+||.+++.++|++|.++|+++||+|+++++|+
T Consensus        10 p~~p~~~~t~~~~l~~~~~~~~~~P~~~a~~d~---~~~----~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~ns   82 (541)
T d1lcia_          10 PFYPLEDGTAGEQLHKAMKRYALVPGTIAFTDA---HIE----VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENS   82 (541)
T ss_dssp             CSSCCCSSCHHHHHHHHHHHHHTSTTCEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSC
T ss_pred             CCCCCCCCCHHHHHHHHHHhhCCCCCeEEEEeC---CCC----eEeeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCC
Confidence            344455679999999999988   555566543   222    5799999999999999999999999999999999999


Q ss_pred             HhHHHHHHHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhh
Q 010536          113 PEWIIAMEACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAE  192 (508)
Q Consensus       113 ~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (508)
                      ++++++++||+++|++++|+++.++.+++.++|+.++++++|++++..+.+.+... .++..+.+++++......     
T Consensus        83 ~e~~v~~lA~~~~G~i~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----  156 (541)
T d1lcia_          83 LQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQK-KLPIIQKIIIMDSKTDYQ-----  156 (541)
T ss_dssp             SSTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHH-HCTTCCEEEETTCSSCBT-----
T ss_pred             HHHHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhccceEEeeeccccccchhccc-cccccceeeeecCCcccc-----
Confidence            99999999999999999999999999999999999999999999988777655543 346667777765443211     


Q ss_pred             hcCceeeeHHHHHhcC-------CCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCC
Q 010536          193 ELGVSCFSWEEFLQLG-------TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSE  265 (508)
Q Consensus       193 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~  265 (508)
                          .+..+.+.....       ....+.....++++++|+|||||||.||+|.++|++++.........+..  .....
T Consensus       157 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~--~~~~~  230 (541)
T d1lcia_         157 ----GFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFG--NQIIP  230 (541)
T ss_dssp             ----TBEEHHHHHHHHSCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTS--CCCCT
T ss_pred             ----ccchhhhhhhhhccccccccccCccccCCCCceEEEEeeccccccccccccccchhhhhhhhhhhhccc--ccccc
Confidence                122333332211       11112333456889999999999999999999999998877765543311  25678


Q ss_pred             CcEEEEecChHHHHHHHHHHHHHHcCcEEEEecC-CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHH
Q 010536          266 EDTYFSFLPLAHIYDQIIETHCIHKGCSIGFWRG-DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKL  344 (508)
Q Consensus       266 ~~~~l~~~pl~~~~g~~~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~  344 (508)
                      ++++++.+|++|.++....+..+..++.++.... +....+..+.++++|.+..+|.++..++....             
T Consensus       231 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~-------------  297 (541)
T d1lcia_         231 DTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTL-------------  297 (541)
T ss_dssp             TCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEECCHHHHHHHHHCSC-------------
T ss_pred             cccccccccccccccccccccccccccccccccccccchhHHHHhhhhccccccCcccccccccccc-------------
Confidence            8999999999999999988888888888777764 89999999999999999999999998765211             


Q ss_pred             HHHHHHHHhhhhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCC-ceeeecccccCCcc
Q 010536          345 FEFAYNYKLGNMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGA-PLTQGYGLTESCSG  423 (508)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~-~v~~~YG~TE~~~~  423 (508)
                                              ....++        ++++.+++||+++++...+++.+.++. .+++.||+||+++.
T Consensus       298 ------------------------~~~~~~--------~~l~~v~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~  345 (541)
T d1lcia_         298 ------------------------IDKYDL--------SNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSA  345 (541)
T ss_dssp             ------------------------GGGSCC--------TTCCEEECTTCCCCHHHHHHHHHHTTCSCCBCEECCGGGSSC
T ss_pred             ------------------------cccccc--------ccceEEEecccccccccccccccccCCceeeecCCccccCce
Confidence                                    111111        389999999999999999999998865 68999999999988


Q ss_pred             eeeccCCCCcccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccc-cCCccccCcEEE
Q 010536          424 CFTSLADVFNMIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGDIGE  502 (508)
Q Consensus       424 ~~~~~~~~~~~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~-~~gw~~TGDlg~  502 (508)
                      ++........ .+++|+|+||++++|+|.+++..++  .|+.|||+|+|++++.||+++++.+...+ .+|||+|||+|+
T Consensus       346 ~~~~~~~~~~-~~svG~p~~~~~~~i~d~d~~~~~~--~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~TGDl~~  422 (541)
T d1lcia_         346 ILITPEGDDK-PGAVGKVVPFFEAKVVDLDTGKTLG--VNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAY  422 (541)
T ss_dssp             SEECCCC----CCCCBEECTTCEEEEECTTTCCBCC--TTCCEEEEEESTTSCSEETTBHHHHHHHBCTTSCEEEEEEEE
T ss_pred             EEecCcccCC-CCccccccCCCEEEEEECCCCcCCC--CCCeEEEEEccCccCCeeCCChhhhhhcccCCccccCCCeeE
Confidence            8776655543 4899999999999999944455454  45899999999999999999998888777 689999999999


Q ss_pred             EcCCCC
Q 010536          503 WQPMEL  508 (508)
Q Consensus       503 ~d~dG~  508 (508)
                      +|+||+
T Consensus       423 ~~~~G~  428 (541)
T d1lcia_         423 WDEDEH  428 (541)
T ss_dssp             ECTTCC
T ss_pred             EcCCeE
Confidence            999985

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

Probab=100.00  E-value=5.1e-52  Score=427.06  Aligned_cols=374  Identities=19%  Similarity=0.272  Sum_probs=308.2

Q ss_pred             CCCCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHH
Q 010536           40 AGLESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAM  119 (508)
Q Consensus        40 ~~~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~  119 (508)
                      +...||.++|+++|+++||++|+++.   +      +++||+||.++++++|.+|+++|+++||+|+++++|++++++++
T Consensus        20 ~~~~tl~~l~~~~a~~~Pd~~Al~~~---~------~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~   90 (514)
T d1amua_          20 PRDKTIHQLFEEQVSKRPNNVAIVCE---N------EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGI   90 (514)
T ss_dssp             CTTCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHhCCCCeEEEEC---C------eeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHH
Confidence            46689999999999999999999975   3      68999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCceee
Q 010536          120 EACNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCF  199 (508)
Q Consensus       120 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (508)
                      +||+++|++++|++|.++.+++.++++.++++++|++......+......    . ..........              
T Consensus        91 la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~----~-~~~~~~~~~~--------------  151 (514)
T d1amua_          91 LAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQFN----G-QVEIFEEDTI--------------  151 (514)
T ss_dssp             HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCCC----S-EEEECCCSTT--------------
T ss_pred             HHHHHhCcEEEEeCCCCCHHHHHHHHhccCCcEEEEehhhhhhhhhhccc----c-cccccccccc--------------
Confidence            99999999999999999999999999999999999998776655433221    1 1111111100              


Q ss_pred             eHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHH
Q 010536          200 SWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHIY  279 (508)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~  279 (508)
                            ..........+..++++++|+|||||||.||+|.++|.++..........+     ....++++++.+|++|.+
T Consensus       152 ------~~~~~~~~~~p~~~~d~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~  220 (514)
T d1amua_         152 ------KIREGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSL-----NVTEKDRIGQFASISFDA  220 (514)
T ss_dssp             ------TTSCCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTS-----CCCTTCEEEECSCTTSTH
T ss_pred             ------cccccccCCCCCCcccceEEEEccCCCCCcccccccccccccccccccccc-----cccccccccceecccccc
Confidence                  001122233445678999999999999999999999999999999987776     888999999999999999


Q ss_pred             HHHHHHHHHHcCcEEEEecC----CHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhh
Q 010536          280 DQIIETHCIHKGCSIGFWRG----DVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGN  355 (508)
Q Consensus       280 g~~~~~~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (508)
                      ++...+.++..|+.+++...    +....++.+..+.++.+..+|........                           
T Consensus       221 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------  273 (514)
T d1amua_         221 SVWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDP---------------------------  273 (514)
T ss_dssp             HHHHHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCT---------------------------
T ss_pred             ccccccccccccccccccccccccchhhhhhhhhhhhcccccceeeecccccc---------------------------
Confidence            99988899999999988753    67888999999999999998876443100                           


Q ss_pred             hhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCcceeeccCCCC--c
Q 010536          356 MKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVF--N  433 (508)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~--~  433 (508)
                                      .++        .+++.+++||+++++++.+++.+  +..+++.||+||++.+++.......  .
T Consensus       274 ----------------~~~--------~~l~~~~~~G~~~~~~~~~~~~~--~~~~~~~yG~tE~~~~~~~~~~~~~~~~  327 (514)
T d1amua_         274 ----------------ERI--------LSIQTLITAGSATSPSLVNKWKE--KVTYINAYGPTETTICATTWVATKETIG  327 (514)
T ss_dssp             ----------------TTC--------CSCSEEEEESSCCCHHHHHHHTT--TSEEEEEECCGGGSSCSEEEECCSSCCC
T ss_pred             ----------------ccc--------ccccEEEEecccCCHHHhhhhcc--ceeEEEeeccccCceeeeeccccccccC
Confidence                            001        38999999999999999988866  7899999999999998776555442  2


Q ss_pred             ccCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccc-------cCCccccCcEEEEcCC
Q 010536          434 MIGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-------VDGWFHTGDIGEWQPM  506 (508)
Q Consensus       434 ~~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~-------~~gw~~TGDlg~~d~d  506 (508)
                      ..++.|.+.++..+.+.| +++..++.+  +.|||+|+||.++.||+++++.+.+.|       .+|||+|||+|++|+|
T Consensus       328 ~~~~~~~~~~~~~v~~~d-~~~~~~~~g--~~GEl~v~~~~~~~gY~~~~~~~~~~~~~~~~~~~~~~~~TGD~g~~d~~  404 (514)
T d1amua_         328 HSVPIGAPIQNTQIYIVD-ENLQLKSVG--EAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSD  404 (514)
T ss_dssp             SSCCCBEECTTEEEEEEC-TTSCBCCTT--CEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTT
T ss_pred             cccccccceeeeeEeeec-ccceecCCC--CeeEEEEccCcccccccccccccceeeEeccccCCCceEEECCEEEECCC
Confidence            336788999999999999 888877766  899999999999999999999887776       2679999999999999


Q ss_pred             CC
Q 010536          507 EL  508 (508)
Q Consensus       507 G~  508 (508)
                      |+
T Consensus       405 G~  406 (514)
T d1amua_         405 GN  406 (514)
T ss_dssp             SC
T ss_pred             Cc
Confidence            96

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=3.9e-50  Score=414.94  Aligned_cols=390  Identities=17%  Similarity=0.184  Sum_probs=313.1

Q ss_pred             CCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHHHH
Q 010536           43 ESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEAC  122 (508)
Q Consensus        43 ~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~lA~  122 (508)
                      .|+.++|+++|+++||++|+++.   +      +++||+||.++++++|++|.++|+++||+|+++++|+++++++++||
T Consensus        25 ~tl~~~l~~~a~~~pd~~Al~~~---~------~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~   95 (536)
T d1mdba_          25 ETFGDLLRDRAAKYGDRIAITCG---N------THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFAL   95 (536)
T ss_dssp             CCHHHHHHHHHHHHTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHCCCCeEEEEC---C------EeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHHHH
Confidence            69999999999999999999875   4      68999999999999999999999999999999999999999999999


Q ss_pred             HHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhh----cCccCCCCccEEEEecCCCchhhhhhhhcCcee
Q 010536          123 NSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILS----CLPRCCLYLKTIVSFANVSSSQKKEAEELGVSC  198 (508)
Q Consensus       123 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (508)
                      +++|++++|++|.++.+++.++++.++++++++++........    ........+...+.......            .
T Consensus        96 ~~~G~i~vpl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~  163 (536)
T d1mdba_          96 FRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEE------------F  163 (536)
T ss_dssp             HHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCTT------------S
T ss_pred             HHhCcEEEecCCCCCHHHHHHHHHhhccceEeccchhhhhhhhhhhhhhhhccccccceeeeecccc------------c
Confidence            9999999999999999999999999999999998653321111    11111122222222211111            1


Q ss_pred             eeHHHHHhcCCCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHH
Q 010536          199 FSWEEFLQLGTLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLAHI  278 (508)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~  278 (508)
                      ..+++.   ........+..++++++|+|||||||.||+|.+||.++...+......+     ....++++++..|++|.
T Consensus       164 ~~~~~~---~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~~~~~~  235 (536)
T d1mdba_         164 LPLEDL---HTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-----WLDHSTVYLAALPMAHN  235 (536)
T ss_dssp             EEGGGC---CCCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECSCTTSH
T ss_pred             cchhhc---ccCCcCCCccCccchHHhhhcccccccceeccccccccccccccccccc-----ccccccccccccccccc
Confidence            112111   1223334456788999999999999999999999999999999988877     88999999999999999


Q ss_pred             HHHHH--HHHHHHcCcEEEEec-CCHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhh
Q 010536          279 YDQII--ETHCIHKGCSIGFWR-GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLGN  355 (508)
Q Consensus       279 ~g~~~--~~~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (508)
                      +++..  ....+..|.+++..+ +++..++..+++++++.+..+|..+..+..........                   
T Consensus       236 ~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------  296 (536)
T d1mdba_         236 YPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDD-------------------  296 (536)
T ss_dssp             HHHHSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCC-------------------
T ss_pred             cceeeccccccccccccccccCCCCHHHHHHHHhhhccccccccchhhhhhhhhccccccc-------------------
Confidence            99863  444555567676665 49999999999999999999999998876533222111                   


Q ss_pred             hhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCcceeeccCCCCccc
Q 010536          356 MKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNMI  435 (508)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~  435 (508)
                                                .++++.+++||+++++.+.+++.+.++......|+.+|.+..+...........
T Consensus       297 --------------------------~~~~~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (536)
T d1mdba_         297 --------------------------LSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIV  350 (536)
T ss_dssp             --------------------------CTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCTTSCHHHHH
T ss_pred             --------------------------cCcceeEEEeccccccccccchhhccCceeeecccccccccccccccccccccc
Confidence                                      137899999999999999999999999999999999998877666555555555


Q ss_pred             CccccccCCeEEEEeecCCCCccCCCCCCCCeEEEecCcccccccCCcccccccc-cCCccccCcEEEEcCCCC
Q 010536          436 GTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRGNTLFSGYYKRPDLTEEVI-VDGWFHTGDIGEWQPMEL  508 (508)
Q Consensus       436 ~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g~~v~~gY~~~~~~~~~~~-~~gw~~TGDlg~~d~dG~  508 (508)
                      +++|+|+++....+++.++++.++.+  +.|||+++|+.++.||+++++.+...+ .+|||+|||+|++|+||+
T Consensus       351 ~~~g~p~~~~~~~~v~~~~g~~~~~~--~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~tGD~~~~~~dG~  422 (536)
T d1mdba_         351 NTQGKPMSPYDESRVWDDHDRDVKPG--ETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGY  422 (536)
T ss_dssp             HCCCEESSTTCEEEEECTTSCBCCTT--CCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSC
T ss_pred             CCcccCCCCcceEEEEcCCCCeeccc--ccceeecCCCccccccccccccccccccccCccccCccccccCCCc
Confidence            88999987555444443677665554  899999999999999999998888777 679999999999999995

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

Probab=100.00  E-value=7e-47  Score=386.81  Aligned_cols=386  Identities=19%  Similarity=0.233  Sum_probs=306.4

Q ss_pred             CCCHHHHHHHHHHhCCCCCceeeeeccCCCCCCceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCcHhHHHHHHH
Q 010536           42 LESPWQFFCDSAKRIPNNQMLGGRKVSDGKVGPYVWLTYQEVYDAAIRFGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEA  121 (508)
Q Consensus        42 ~~ti~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~gv~~gd~Vai~~~n~~~~~~~~lA  121 (508)
                      ++|++++|+++|+++||++|+++.   +..    +++||+||.++++++|++|.++|+++||+|+++++|++++++++||
T Consensus         1 ~~ti~~~l~~~a~~~pd~~al~~~---~~~----~~~Ty~el~~~~~~~a~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA   73 (503)
T d3cw9a1           1 MQTVNEMLRRAATRAPDHCALAVP---ARG----LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILA   73 (503)
T ss_dssp             CCCHHHHHHHHHHHSTTSEEEEEG---GGT----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhCCCCeEEEEC---CCC----cEEeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHH
Confidence            479999999999999999999987   443    6899999999999999999999999999999999999999999999


Q ss_pred             HHHcCCEEEeccCCCCHHHHHHHHHhcCceEEEEcCCChhhHhhcCccCCCCccEEEEecCCCchhhhhhhhcCceeeeH
Q 010536          122 CNSQAITYVPLYDTLGANAVEFIINHAEVSIAFVQENKIPSILSCLPRCCLYLKTIVSFANVSSSQKKEAEELGVSCFSW  201 (508)
Q Consensus       122 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (508)
                      |+++|++++||+|.++.+++.+++++++++++|++..........  .. .....++.+                     
T Consensus        74 ~~~~G~v~vpi~~~~~~~~i~~~l~~~~~~~~i~~~~~~~~~~~~--~~-~~~~~~i~~---------------------  129 (503)
T d3cw9a1          74 LHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIF--QS-GSGARIIFL---------------------  129 (503)
T ss_dssp             HHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEESSCHHHHHHHH--HT-TCCCEEEEH---------------------
T ss_pred             HHHhCcEEEEeCCCCCHHHHHHHHHhcCCcEEEeecchHHHHHHh--hh-ccccccccc---------------------
Confidence            999999999999999999999999999999999887533221110  01 112223222                     


Q ss_pred             HHHHhcC-----CCCCCCCCCCCCCeEEEEecCCCCCCcceeecchHHHHHHHhhhhhhhhhccccCCCCcEEEEecChH
Q 010536          202 EEFLQLG-----TLDCELPPKKKTNISTIMYTSGTTGEPKGVVLTNQAIVAEVLSVDQMFVVTGKVCSEEDTYFSFLPLA  276 (508)
Q Consensus       202 ~~~~~~~-----~~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~  276 (508)
                      .++....     ..+.......++++++++|||||||.||+|.++|.++...+......+   .......+++++.+|+.
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~p~~  206 (503)
T d3cw9a1         130 GDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV---GLRHGRHNVVLGLMPLY  206 (503)
T ss_dssp             HHHEETTEECCCSCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEGGGHHHHHHHHHHTS---CCCSSTTCEEEECSCTT
T ss_pred             hhhhhhhcccccCCccccccchhhhhhhhcccccccccccccccccchhhhhhhhccccc---cccccccccccccCccc
Confidence            2222111     122233445778999999999999999999999999999998876554   23456778999999998


Q ss_pred             HHHHHHH-HHHHHHcCcEEEEec-CCHHhHHHHhhhhcCeEEEecchHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHhh
Q 010536          277 HIYDQII-ETHCIHKGCSIGFWR-GDVRYLMEDIQELKPTMFSGVPRVYDRIYTGISNKISSGGALSKKLFEFAYNYKLG  354 (508)
Q Consensus       277 ~~~g~~~-~~~~l~~G~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (508)
                      |.++... .+.+...++.+++.+ +++..++..+.+++++++..+|..+..+............                
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------  270 (503)
T d3cw9a1         207 HVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLK----------------  270 (503)
T ss_dssp             SHHHHHTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHHHTCTTCC----------------
T ss_pred             cccccccccccccccccccccccccChHHhhhhhhhceeecccccccccccccccccccccccc----------------
Confidence            8887774 566667777777665 4999999999999999999999999887654332221111                


Q ss_pred             hhhcCCCCCcchhhhHHHHHHHHHHHhCCcEEEEEEecCCCCHHHHHHHHHhcCCceeeecccccCCcceeeccCCCCcc
Q 010536          355 NMKKGMPQNKAAPLLDSLVFSKIREAFGGRLQAMLSGAAPLPIHVEEFLRVTSGAPLTQGYGLTESCSGCFTSLADVFNM  434 (508)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~  434 (508)
                                                 .++||.+++||+++++++..++...++..+.+.||.||++..+..........
T Consensus       271 ---------------------------~~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~~yg~~e~~~~~~~~~~~~~~~  323 (503)
T d3cw9a1         271 ---------------------------LDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPKTGTE  323 (503)
T ss_dssp             ---------------------------CTTCCEEEECSSCCCHHHHHHHHHHCCSEEEEEEEETTTEEEEEEESCSSSSE
T ss_pred             ---------------------------ccceEEEEeccccccccccccccccccccccccccccccceeeeecccccccc
Confidence                                       13899999999999999999999999999999999999988777665554333


Q ss_pred             cCccccccCCeEEEEeecCCCCccCCCCCCCCeEEEec-CcccccccCCcccccccccCCccccCcEEEEcCCCC
Q 010536          435 IGTVGVPMTTVEARLESVPEMGYDALSSVPRGEICLRG-NTLFSGYYKRPDLTEEVIVDGWFHTGDIGEWQPMEL  508 (508)
Q Consensus       435 ~~s~G~p~~~~~~~i~d~~~~~~~~~~~~~~GEl~v~g-~~v~~gY~~~~~~~~~~~~~gw~~TGDlg~~d~dG~  508 (508)
                       .+.+.+.+.....+.+ ..+...+.  |+.|++++.+ +....+|++++..+.+.|.+|||+|||+|++|+||+
T Consensus       324 -~~~~~~~~~~~~~~~~-~~~~~~~~--g~~g~~~~~~~~~~~~~~~~~~~~t~~~~~~g~~~TgD~g~~~~dG~  394 (503)
T d3cw9a1         324 -MAPGFFSEVRIVRIGG-GVDEIVAN--GEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGT  394 (503)
T ss_dssp             -EBCCTTCCEEEECTTS-CTTCBCCT--TCCEEEEEECCTTSCCCBTTCHHHHHHHEETTEEEEEEEEEECTTSC
T ss_pred             -ccccccccceeeeeec-ccCcccCC--CccccccccccccccccccCChhhhHHHhcCCceecccccccccCCe
Confidence             4555555555555555 56655554  4889888876 466678899999999999999999999999999995