Citrus Sinensis ID: 010568
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 507 | 2.2.26 [Sep-21-2011] | |||||||
| Q9T0A0 | 666 | Long chain acyl-CoA synth | yes | no | 0.988 | 0.752 | 0.735 | 0.0 | |
| Q9T009 | 666 | Long chain acyl-CoA synth | no | no | 0.994 | 0.756 | 0.706 | 0.0 | |
| Q9C7W4 | 665 | Long chain acyl-CoA synth | no | no | 0.996 | 0.759 | 0.682 | 0.0 | |
| Q9XIA9 | 665 | Long chain acyl-CoA synth | no | no | 0.986 | 0.751 | 0.501 | 1e-155 | |
| O22898 | 660 | Long chain acyl-CoA synth | no | no | 0.976 | 0.75 | 0.478 | 1e-144 | |
| Q8LKS5 | 700 | Long chain acyl-CoA synth | no | no | 0.895 | 0.648 | 0.387 | 5e-87 | |
| Q55DR6 | 667 | Fatty acyl-CoA synthetase | yes | no | 0.877 | 0.667 | 0.389 | 3e-84 | |
| Q8LPS1 | 701 | Long chain acyl-CoA synth | no | no | 0.895 | 0.647 | 0.394 | 8e-84 | |
| Q1ZXQ4 | 673 | Fatty acyl-CoA synthetase | no | no | 0.897 | 0.676 | 0.347 | 2e-77 | |
| O88813 | 683 | Long-chain-fatty-acid--Co | yes | no | 0.883 | 0.655 | 0.367 | 3e-73 |
| >sp|Q9T0A0|LACS4_ARATH Long chain acyl-CoA synthetase 4 OS=Arabidopsis thaliana GN=LACS4 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 794 bits (2051), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/502 (73%), Positives = 435/502 (86%), Gaps = 1/502 (0%)
Query: 5 KYVVEVEKAKEASGGRPSIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNRMLG 64
KY+ +VE+ KE S GRPS+GPVYRS+FAKDGFP PI GM+SCWDVFRM+VE+ PNN MLG
Sbjct: 6 KYIFQVEEGKEGSDGRPSVGPVYRSIFAKDGFPDPIEGMDSCWDVFRMSVEKYPNNPMLG 65
Query: 65 QREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACN 124
+REIVDGK GKYVW+TY+EVYD+V+K+ N++R+ GV++ KCGIYG N PEWII MEACN
Sbjct: 66 RREIVDGKPGKYVWQTYQEVYDIVMKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEACN 125
Query: 125 ALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKV 184
A GL+CVPLYDTLGA AVEFII HS VSI FVEEKKI E+ KT P +TE++KT+VSF V
Sbjct: 126 AHGLYCVPLYDTLGADAVEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVSFGGV 185
Query: 185 KPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSN 244
EQ+EE E +GL +Y+WDEFL+LGE KQ+DLP+KKK+DICTIMYTSGTTGDPKGVM+SN
Sbjct: 186 SREQKEEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMISN 245
Query: 245 ENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVK 304
E+IVT IAGV LL+S NE LT +DVY+SYLPLAHIFDR IEE FI +GAAIGFWRGDVK
Sbjct: 246 ESIVTLIAGVIRLLKSANEALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGDVK 305
Query: 305 LLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKH 364
LL+ED+ ELKPTIFCAVPRVLDR+YSGL +K+S GG LKK +F+ A+SYKF +KKG H
Sbjct: 306 LLIEDLAELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFIFDSAFSYKFGYMKKGQSH 365
Query: 365 VEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCA 424
VEASP+ DK+VF KVKQ GG VR+ILSGAAPL HVE+FLRVVAC HVLQGYGLTE+CA
Sbjct: 366 VEASPLFDKLVFSKVKQGLGGNVRIILSGAAPLASHVESFLRVVACCHVLQGYGLTESCA 425
Query: 425 GTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKR 484
GTFVSLP+E+ M+GTVGPPVPNVD+ LESVPEMEYDAL+ST RGE+C++G T+FSGYYKR
Sbjct: 426 GTFVSLPDELGMLGTVGPPVPNVDIRLESVPEMEYDALASTARGEICIRGKTLFSGYYKR 485
Query: 485 EDLTKEVMVDGWFHTG-MGVWE 505
EDLTKEV++DGW HTG +G W+
Sbjct: 486 EDLTKEVLIDGWLHTGDVGEWQ 507
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Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate and linoleate. Arabidopsis thaliana (taxid: 3702) EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: 3 |
| >sp|Q9T009|LACS5_ARATH Long chain acyl-CoA synthetase 5 OS=Arabidopsis thaliana GN=LACS5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 782 bits (2019), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/505 (70%), Positives = 432/505 (85%), Gaps = 1/505 (0%)
Query: 2 SNMKYVVEVEKAKEASGGRPSIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNR 61
S +++ EVE AKEA+ G PS+GPVYRS FA++GFP PI G++SCWD+FR AVE+ PNNR
Sbjct: 3 SQKRFIFEVEAAKEATDGNPSVGPVYRSTFAQNGFPNPIDGIQSCWDIFRTAVEKYPNNR 62
Query: 62 MLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGME 121
MLG+REI +GKAGKYVWKTYKEVYD+VIK+ N++R+CG++E KCGIYG+NC EWII ME
Sbjct: 63 MLGRREISNGKAGKYVWKTYKEVYDIVIKLGNSLRSCGIKEGEKCGIYGINCCEWIISME 122
Query: 122 ACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSF 181
ACNA GL+CVPLYDTLGAGAVEFII H+ VSIAFVEEKKIPE+ KT P +T+++KT+VSF
Sbjct: 123 ACNAHGLYCVPLYDTLGAGAVEFIISHAEVSIAFVEEKKIPELFKTCPNSTKYMKTVVSF 182
Query: 182 SKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVM 241
VKPEQ+EE EK GL ++SWDEFL+LGE KQ++LP+KK +DICTIMYTSGTTGDPKGVM
Sbjct: 183 GGVKPEQKEEAEKLGLVIHSWDEFLKLGEGKQYELPIKKPSDICTIMYTSGTTGDPKGVM 242
Query: 242 VSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRG 301
+SNE+IVT GV L +VN L+ +DVY+SYLPLAH+FDRAIEE I G +IGFWRG
Sbjct: 243 ISNESIVTITTGVMHFLGNVNASLSEKDVYISYLPLAHVFDRAIEECIIQVGGSIGFWRG 302
Query: 302 DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKG 361
DVKLL+ED+GELKP+IFCAVPRVLDR+Y+GL QK+S GG KK +F++A+SYKF N+KKG
Sbjct: 303 DVKLLIEDLGELKPSIFCAVPRVLDRVYTGLQQKLSGGGFFKKKVFDVAFSYKFGNMKKG 362
Query: 362 HKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTE 421
HV ASP DK+VF+KVKQ GG VR+ILSGAAPL H+E+FLRVVAC +VLQGYGLTE
Sbjct: 363 QSHVAASPFCDKLVFNKVKQGLGGNVRIILSGAAPLASHIESFLRVVACCNVLQGYGLTE 422
Query: 422 TCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGY 481
+CAGTF + P+E+ M+GTVGPPVPNVD+ LESVPEM YDAL STPRGE+C++G T+FSGY
Sbjct: 423 SCAGTFATFPDELDMLGTVGPPVPNVDIRLESVPEMNYDALGSTPRGEICIRGKTLFSGY 482
Query: 482 YKREDLTKEVMVDGWFHTG-MGVWE 505
YKREDLTKEV +DGW HTG +G W+
Sbjct: 483 YKREDLTKEVFIDGWLHTGDVGEWQ 507
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Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate and linoleate. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q9C7W4|LACS3_ARATH Long chain acyl-CoA synthetase 3 OS=Arabidopsis thaliana GN=LACS3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 751 bits (1938), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/507 (68%), Positives = 430/507 (84%), Gaps = 2/507 (0%)
Query: 1 MSNMKYVVEVEKAKEA-SGGRPSIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPN 59
M+ +Y+VEVEK K+ GG PS+GPVYRS++AKDGFP P + S WD+FR++VE++PN
Sbjct: 1 MATGRYIVEVEKGKQGVDGGSPSVGPVYRSIYAKDGFPEPPDDLVSAWDIFRLSVEKSPN 60
Query: 60 NRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIG 119
N MLG+REIVDGKAGKYVW+TYKEV+++VIK+ N+IRT GV + KCGIYG N PEWII
Sbjct: 61 NPMLGRREIVDGKAGKYVWQTYKEVHNVVIKLGNSIRTIGVGKGDKCGIYGANSPEWIIS 120
Query: 120 MEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIV 179
MEACNA GL+CVPLYDTLGAGA+EFIICH+ VS+AF EE KI E+LKT PK+T++LK IV
Sbjct: 121 MEACNAHGLYCVPLYDTLGAGAIEFIICHAEVSLAFAEENKISELLKTAPKSTKYLKYIV 180
Query: 180 SFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKG 239
SF +V QR E E++ L +YSWD+FL+LGE K ++LP K+++D+CTIMYTSGTTGDPKG
Sbjct: 181 SFGEVTNNQRVEAERHRLTIYSWDQFLKLGEGKHYELPEKRRSDVCTIMYTSGTTGDPKG 240
Query: 240 VMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFW 299
V+++NE+I+ + GVK LL++++E+LTS+DVY+SYLPLAHIFDR IEE+ I A+IGFW
Sbjct: 241 VLLTNESIIHLLEGVKKLLKTIDEELTSKDVYLSYLPLAHIFDRVIEELCIYEAASIGFW 300
Query: 300 RGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLK 359
RGDVK+L+EDI LKPT+FCAVPRVL+RIY+GL QK+S GG +KK LFN A+ YK N++
Sbjct: 301 RGDVKILIEDIAALKPTVFCAVPRVLERIYTGLQQKLSDGGFVKKKLFNFAFKYKHKNME 360
Query: 360 KGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGL 419
KG H +ASPIADKIVF KVK+ GG VRLILSGAAPL H+E+FLRVVACAHVLQGYGL
Sbjct: 361 KGQPHEQASPIADKIVFKKVKEGLGGNVRLILSGAAPLAAHIESFLRVVACAHVLQGYGL 420
Query: 420 TETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFS 479
TE+C GTFVS+PNE+SM+GTVGPPVPNVD+ LESVPEM YDAL+S PRGE+C++G T+FS
Sbjct: 421 TESCGGTFVSIPNELSMLGTVGPPVPNVDIRLESVPEMGYDALASNPRGEICIRGKTLFS 480
Query: 480 GYYKREDLTKEVMVDGWFHTG-MGVWE 505
GYYKREDLT+EV +DGW HTG +G W+
Sbjct: 481 GYYKREDLTQEVFIDGWLHTGDVGEWQ 507
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Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate and linoleate. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q9XIA9|LACS2_ARATH Long chain acyl-CoA synthetase 2 OS=Arabidopsis thaliana GN=LACS2 PE=2 SV=1 | Back alignment and function description |
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Score = 548 bits (1411), Expect = e-155, Method: Compositional matrix adjust.
Identities = 252/502 (50%), Positives = 359/502 (71%), Gaps = 2/502 (0%)
Query: 7 VVEVEKAKEASGGRPSIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNRMLGQR 66
V+ VE+ + A+ PS GPVYR +AKDG ++S W F AV++ PN +MLGQR
Sbjct: 8 VLLVEEGRPATAEHPSAGPVYRCKYAKDGLLDLPTDIDSPWQFFSEAVKKYPNEQMLGQR 67
Query: 67 EIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNAL 126
D K G Y W TYKE +D I++ +AIR+ GV+ CGIYG NCPEWII MEAC +
Sbjct: 68 VTTDSKVGPYTWITYKEAHDAAIRIGSAIRSRGVDPGHCCGIYGANCPEWIIAMEACMSQ 127
Query: 127 GLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKP 186
G+ VPLYD+LG AVEFII H+ VS+ FV+EK + +L + +LKTIVSF +V
Sbjct: 128 GITYVPLYDSLGVNAVEFIINHAEVSLVFVQEKTVSSILSCQKGCSSNLKTIVSFGEVSS 187
Query: 187 EQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNEN 246
Q+EE + ++++SW+EF +G + +LP K+K DICTIMYTSGTTG+PKGV+++N
Sbjct: 188 TQKEEAKNQCVSLFSWNEFSLMGNLDEANLPRKRKTDICTIMYTSGTTGEPKGVILNNAA 247
Query: 247 IVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKLL 306
I + + +LE + + DV+ SYLPLAH +D+ +E F+S G+++G+WRGD++ L
Sbjct: 248 ISVQVLSIDKMLEVTDRSCDTSDVFFSYLPLAHCYDQVMEIYFLSRGSSVGYWRGDIRYL 307
Query: 307 LEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVE 366
++D+ LKPT+FC VPRV D++Y+G+ QKIS+ GL++K LF+ AY+YK N++KG E
Sbjct: 308 MDDVQALKPTVFCGVPRVYDKLYAGIMQKISASGLIRKKLFDFAYNYKLGNMRKGFSQEE 367
Query: 367 ASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGT 426
ASP D+++FDK+K++ GGR ++LSGAAPL HVE FLR++ +++ QGYGLTE+C G+
Sbjct: 368 ASPRLDRLMFDKIKEALGGRAHMLLSGAAPLPRHVEEFLRIIPASNLSQGYGLTESCGGS 427
Query: 427 FVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSS-TPRGEVCVKGSTVFSGYYKRE 485
F +L SM+GTVG P+P V+ L SVPEM YDA S+ PRGE+C++G+++FSGY+KR+
Sbjct: 428 FTTLAGVFSMVGTVGVPMPTVEARLVSVPEMGYDAFSADVPRGEICLRGNSMFSGYHKRQ 487
Query: 486 DLTKEVMVDGWFHTG-MGVWEQ 506
DLT +V++DGWFHTG +G W++
Sbjct: 488 DLTDQVLIDGWFHTGDIGEWQE 509
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Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Acts in the cutin pathway. Preferentially uses palmitate, palmitoleate, oleate and linoleate. Required for repression of lateral root formation through its role in cutin biosynthesis and subsequent aerial tissues permeability. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|O22898|LACS1_ARATH Long chain acyl-CoA synthetase 1 OS=Arabidopsis thaliana GN=LACS1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 511 bits (1315), Expect = e-144, Method: Compositional matrix adjust.
Identities = 237/495 (47%), Positives = 335/495 (67%)
Query: 6 YVVEVEKAKEASGGRPSIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNRMLGQ 65
+ +VE+ + G+PS+GPVYR+L ++ GFP + + WD+F +VE+ P+N MLG
Sbjct: 4 FAAKVEEGVKGIDGKPSVGPVYRNLLSEKGFPPIDSEITTAWDIFSKSVEKFPDNNMLGW 63
Query: 66 REIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNA 125
R IVD K G Y+WKTYKEVY+ V+++ +A+R G E + GIYGVNCP+WII MEAC A
Sbjct: 64 RRIVDEKVGPYMWKTYKEVYEEVLQIGSALRAAGAEPGSRVGIYGVNCPQWIIAMEACAA 123
Query: 126 LGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVK 185
L CVPLYDTLG+GAV++I+ H+ + FV++ KI +L+ K + LK IVSF+ V
Sbjct: 124 HTLICVPLYDTLGSGAVDYIVEHAEIDFVFVQDTKIKGLLEPDCKCAKRLKAIVSFTNVS 183
Query: 186 PEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNE 245
E + + G+ YSW +FL +G K D K +ICTIMYTSGT+GDPKGV+++++
Sbjct: 184 DELSHKASEIGVKTYSWIDFLHMGREKPEDTNPPKAFNICTIMYTSGTSGDPKGVVLTHQ 243
Query: 246 NIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKL 305
+ TF+ G+ ++ +K+T +DVY+S+LPLAHI DR EE F GA++G++ G++ +
Sbjct: 244 AVATFVVGMDLYMDQFEDKMTHDDVYLSFLPLAHILDRMNEEYFFRKGASVGYYHGNLNV 303
Query: 306 LLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHV 365
L +DI ELKPT VPRV +RI+ G+ + + ++ +FN Y +K L +G+ H
Sbjct: 304 LRDDIQELKPTYLAGVPRVFERIHEGIQKALQELNPRRRFIFNALYKHKLAWLNRGYSHS 363
Query: 366 EASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAG 425
+ASP+AD I F K++ GGR+RL++SG APL+P +E FLRV C V+QGYGLTET G
Sbjct: 364 KASPMADFIAFRKIRDKLGGRIRLLVSGGAPLSPEIEEFLRVTCCCFVVQGYGLTETLGG 423
Query: 426 TFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKRE 485
T + P+EM M+GTVG P ++ LE V EM YD L P GE+C++G +FSGYYK
Sbjct: 424 TALGFPDEMCMLGTVGIPAVYNEIRLEEVSEMGYDPLGENPAGEICIRGQCMFSGYYKNP 483
Query: 486 DLTKEVMVDGWFHTG 500
+LT+EVM DGWFHTG
Sbjct: 484 ELTEEVMKDGWFHTG 498
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Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Acts in both the wax and cutin pathways. Preferentially uses palmitate, palmitoleate, linoleate and eicosenoate. Seems to have a specific activity against very long-chain fatty acid (VLCFA) class with acids longer than 24 carbons (C(24)). Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q8LKS5|LACS7_ARATH Long chain acyl-CoA synthetase 7, peroxisomal OS=Arabidopsis thaliana GN=LACS7 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 322 bits (824), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 181/467 (38%), Positives = 264/467 (56%), Gaps = 13/467 (2%)
Query: 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGV 100
P + + D F AVE N+ LG R DG G+Y W TY E + + + GV
Sbjct: 81 PEIGTLHDNFVHAVETYAENKYLGTRVRSDGTIGEYSWMTYGEAASERQAIGSGLLFHGV 140
Query: 101 EERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKK 160
+ G+Y +N PEW++ AC A VPLYDTLG AV+F++ H+ + F +
Sbjct: 141 NQGDCVGLYFINRPEWLVVDHACAAYSFVSVPLYDTLGPDAVKFVVNHANLQAIFCVPQT 200
Query: 161 IPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKK 220
+ +L +F ++ IV G+ + S+ + L G + K
Sbjct: 201 L-NILLSFLAEIPSIRLIVVVGGADEHLPSLPRGTGVTIVSYQKLLSQGRSSLHPFSPPK 259
Query: 221 KNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHI 280
DI TI YTSGTTG PKGV++++ N++ +AG SV + DVY+SYLPLAHI
Sbjct: 260 PEDIATICYTSGTTGTPKGVVLTHGNLIANVAG-----SSVEAEFFPSDVYISYLPLAHI 314
Query: 281 FDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGG 340
++RA + + + G A+GF++GDV L++D L+PTIFC+VPR+ +RIY G+ + S G
Sbjct: 315 YERANQIMGVYGGVAVGFYQGDVFKLMDDFAVLRPTIFCSVPRLYNRIYDGITSAVKSSG 374
Query: 341 LLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPH 400
++KK LF IAY+ K + G S DK+VF+K+K+ GGRVR + SGA+PL+P
Sbjct: 375 VVKKRLFEIAYNSKKQAIINGRT---PSAFWDKLVFNKIKEKLGGRVRFMGSGASPLSPD 431
Query: 401 VETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYD 460
V FLR+ V +GYG+TET ++ + ++ G VG P P +V L VPEM Y
Sbjct: 432 VMDFLRICFGCSVREGYGMTETSC-VISAMDDGDNLSGHVGSPNPACEVKLVDVPEMNYT 490
Query: 461 ALSST-PRGEVCVKGSTVFSGYYKREDLTKEVMV-DGWFHTG-MGVW 504
+ PRGE+CV+G +F GYYK E+ T+E++ DGW HTG +G+W
Sbjct: 491 SDDQPYPRGEICVRGPIIFKGYYKDEEQTREILDGDGWLHTGDIGLW 537
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Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate, linoleate and eicosenoate. Displays redundant function with LACS7 into the seed development process. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q55DR6|FCSA_DICDI Fatty acyl-CoA synthetase A OS=Dictyostelium discoideum GN=fcsA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 312 bits (800), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 183/470 (38%), Positives = 272/470 (57%), Gaps = 25/470 (5%)
Query: 45 SCWDVFRMAVERNPNNRMLGQREIV-DGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEER 103
+ +DV+R + ++ ++ LG RE++ DGK G Y W +YK+ + +A+ G+ +
Sbjct: 55 TLYDVYR--INKDSDSNFLGIRELLADGKRGDYKWISYKQACIRANNIGSALVQLGLNKG 112
Query: 104 GKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPE 163
+ GI+ +N PEW++ A L V LY TLGA A+E+++ HS +S+ E K + +
Sbjct: 113 DRIGIFSINRPEWVLSDMAAMNHSLVPVALYATLGANAIEYVVNHSEISVLLCEGKNVEK 172
Query: 164 MLKTFPKTTEHLKTIVSFSKVKPEQREEIEKY----GLAVYSWDEFLQLGENKQFDLPVK 219
+L + P TT +KTIVS+ P + ++K+ + +Y +F +LGE V
Sbjct: 173 IL-SMPGTT--IKTIVSYD---PLPQATLDKFKDNENVKLYLLSDFEKLGEQNPAQHEVP 226
Query: 220 KKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAH 279
D+CT++YTSG+TG+PKGVM+++ N+V+ +AG V EDV++SYLPLAH
Sbjct: 227 SPEDLCTLLYTSGSTGNPKGVMLTHTNMVSEVAGANFSPAGV----IPEDVHMSYLPLAH 282
Query: 280 IFDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSG 339
F+RA+ + G IGF+ G + L DI L+PT C PRV R++ L +++
Sbjct: 283 SFERAVVSLMCYVGGQIGFFSGLIPELFNDIQVLRPTFLCGAPRVWQRLHDKLWFTVNND 342
Query: 340 GLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTP 399
LKK LFN + K L+ G +PI DK+VF K K GGRV+ ILSG+APL P
Sbjct: 343 SWLKKFLFNWGLNSKQSALRLG----STTPIWDKLVFSKTKDRLGGRVKFILSGSAPLDP 398
Query: 400 HVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEY 459
+ FLR C V+ GYGL+E G V+ P E + +G VGPP+ ++ L VPEM Y
Sbjct: 399 KLAEFLRACFCCPVVSGYGLSENVGGASVAYP-EDNNVGHVGPPLSACEMKLIDVPEMNY 457
Query: 460 DALSST-PRGEVCVKGSTVFSGYYKREDLTKEVMV-DGWFHTG-MGVWEQ 506
+ PRGEVC++G VF GY+K + TKE + DGWFHTG +G W +
Sbjct: 458 FSTDKPCPRGEVCIRGFNVFKGYFKDPEKTKEDLKEDGWFHTGDIGRWNE 507
|
Long chain fatty acid acyl-CoA synthetases catalyze the formation of a thiester bond between a free fatty acid and coenzyme A during fatty acid metabolic process. May mediate fatty acid retrieval from the lumen of endosomes into the cytoplasm. Dictyostelium discoideum (taxid: 44689) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q8LPS1|LACS6_ARATH Long chain acyl-CoA synthetase 6, peroxisomal OS=Arabidopsis thaliana GN=LACS6 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 311 bits (797), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 184/467 (39%), Positives = 262/467 (56%), Gaps = 13/467 (2%)
Query: 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGV 100
P + + D F AV + + LG R VDG G Y W TY E + + + G+
Sbjct: 81 PDIATLHDNFEHAVHDFRDYKYLGTRVRVDGTVGDYKWMTYGEAGTARTALGSGLVHHGI 140
Query: 101 EERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKK 160
GIY +N PEW+I AC++ VPLYDTLG AV+FI+ H+ V F +
Sbjct: 141 PMGSSVGIYFINRPEWLIVDHACSSYSYVSVPLYDTLGPDAVKFIVNHATVQAIFCVAET 200
Query: 161 IPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKK 220
+ +L + +V ++ G+ V S+ L G + K
Sbjct: 201 LNSLLSCLSEMPSVRLVVVVGGLIE-SLPSLPSSSGVKVVSYSVLLNQGRSNPQRFFPPK 259
Query: 221 KNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHI 280
+D+ TI YTSGTTG PKGV++++ N++ +AG S + K S DVY+SYLPLAHI
Sbjct: 260 PDDVATICYTSGTTGTPKGVVLTHANLIANVAG-----SSFSVKFFSSDVYISYLPLAHI 314
Query: 281 FDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGG 340
++RA + + + G A+GF++GD LL+D+ L+PT+F +VPR+ +RIY+G+ + + G
Sbjct: 315 YERANQILTVYFGVAVGFYQGDNMKLLDDLAALRPTVFSSVPRLYNRIYAGIINAVKTSG 374
Query: 341 LLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPH 400
LK+ LFN AY+ K L G ASPI D++VF+K+K GGRVR + SGA+PL+P
Sbjct: 375 GLKERLFNAAYNAKKQALLNGK---SASPIWDRLVFNKIKDRLGGRVRFMTSGASPLSPE 431
Query: 401 VETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEY- 459
V FL+V V +GYG+TET + ++ G VG P P +V L VPEM Y
Sbjct: 432 VMEFLKVCFGGRVTEGYGMTETSC-VISGMDEGDNLTGHVGSPNPACEVKLVDVPEMNYT 490
Query: 460 DALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTG-MGVW 504
A PRGE+CV+G +F+GYYK E TKEV+ DGW HTG +G+W
Sbjct: 491 SADQPHPRGEICVRGPIIFTGYYKDEIQTKEVIDEDGWLHTGDIGLW 537
|
Activation of long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. Preferentially uses palmitate, palmitoleate, oleate, linoleate and eicosenoate. Might play a regulatory role both in fatty acid import into glyoxysomes and in fatty acid beta-oxidation. Displays redundant function with LACS7 into the seed development process. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|Q1ZXQ4|FCSB_DICDI Fatty acyl-CoA synthetase B OS=Dictyostelium discoideum GN=fcsB PE=2 SV=1 | Back alignment and function description |
|---|
Score = 290 bits (742), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 162/466 (34%), Positives = 263/466 (56%), Gaps = 11/466 (2%)
Query: 45 SCWDVFRMAVERNPNNRMLGQREI-VDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEER 103
+ +D + ++ + G+R+ +G GK+ W +Y + + + G++ +
Sbjct: 64 TLYDSLVKSCKKYGERKCFGERKKDSNGNLGKFEWISYNTYLERCEYIQQGLCELGLKPK 123
Query: 104 GKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPE 163
K GI+ N EW+I A V Y+TLG ++ ++ H+ + +AF + + +
Sbjct: 124 SKVGIFSKNRLEWLIVHSASFIQSYCVVSFYETLGVESLSYVTEHAEIGLAFCSAETLQK 183
Query: 164 MLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGE--NKQFDLPVKKK 221
L K + LKTI+ F + E ++ G+ +Y++DE ++ G+ N +
Sbjct: 184 TL-DIAKGVKVLKTIICFDSIDKEHYNIAKELGVTLYTYDEIMKKGKEANGKHKHTPPTP 242
Query: 222 NDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIF 281
+ + TIMYTSGTTG PKGVM++++N+ + + V + K+ DV+ SYLP AH+
Sbjct: 243 DTLSTIMYTSGTTGPPKGVMITHKNLTSVVCAVSDFI-----KVYDTDVHYSYLPYAHVL 297
Query: 282 DRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGL 341
+R + GAAIG + GD+ +L ++ L PT+F VPRV +RI + + ++IS
Sbjct: 298 ERVVILAAFHFGAAIGIFSGDISNILVEVKLLSPTLFIGVPRVFERIKTNVFKEISKKPA 357
Query: 342 LKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHV 401
L +TLFN AY+ K+ +++ G K + D + F K+KQ+ GG+VR+ILSG+APL+
Sbjct: 358 LLRTLFNGAYNLKYLSIQHGFKLPIIEKVLDLVFFSKIKQALGGKVRVILSGSAPLSFDT 417
Query: 402 ETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDA 461
E FLRVV C VLQGYG +E C G ++ S +GT+GPP + ++ L VPE+ YD+
Sbjct: 418 EVFLRVVMCCCVLQGYGASEGCGGDACKRLDDES-VGTIGPPFASNEIKLVDVPELGYDS 476
Query: 462 LSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG-MGVWEQ 506
GEVC++G ++ SGYYK E+ T+E DGWFHTG +G W +
Sbjct: 477 NGEVQTGEVCLRGPSISSGYYKDEEKTREEFKDGWFHTGDIGRWNR 522
|
Long chain fatty acid acyl-CoA synthetases catalyze the formation of a thiester bond between a free fatty acid and coenzyme A during fatty acid metabolic process. Dictyostelium discoideum (taxid: 44689) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
| >sp|O88813|ACSL5_RAT Long-chain-fatty-acid--CoA ligase 5 OS=Rattus norvegicus GN=Acsl5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 276 bits (706), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 172/468 (36%), Positives = 264/468 (56%), Gaps = 20/468 (4%)
Query: 44 ESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVE-- 101
++ ++VF+ + + N LG R+ Y W +YK+V D + + + G +
Sbjct: 75 KTLYEVFQRGLAVSDNGPCLGYRK----PNQPYKWISYKQVSDRAEYLGSCLLHKGYKPS 130
Query: 102 ERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKI 161
+ GI+ N PEW+I AC + VPLYDTLGA A+ ++I + +S+ + +
Sbjct: 131 QDQFIGIFAQNRPEWVISELACYTYSMVAVPLYDTLGAEAIIYVINRADISVVICDTPQK 190
Query: 162 PEML--KTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLG-ENKQFDLPV 218
ML T LKT++ + + EK G+ + S + LG EN + +P
Sbjct: 191 ATMLIENVEKDLTPGLKTVILMDPFDDDLMKRGEKCGIEMLSLHDAENLGKENFKKPMP- 249
Query: 219 KKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLA 278
D+ I +TSGTTGDPKG M++++NIV+ +A LE + + T EDV +SYLPLA
Sbjct: 250 PNPEDLSVICFTSGTTGDPKGAMLTHQNIVSNMAAFLKFLEPIFQP-TPEDVTISYLPLA 308
Query: 279 HIFDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISS 338
H+F+R ++ V S G IGF++GD++LL +D+ LKPT+F VPR+L+R+Y + + +
Sbjct: 309 HMFERLVQGVIFSCGGKIGFFQGDIRLLPDDMKALKPTVFPTVPRLLNRVYDKVQNEAKT 368
Query: 339 GGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLT 398
LKK L N+A KF+ ++ G + + + DK+VF K++ S GG+VRL+++GAAP++
Sbjct: 369 P--LKKFLLNLAIISKFNEVRNG--IIRRNSLWDKLVFSKIQSSLGGKVRLMITGAAPIS 424
Query: 399 PHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEME 458
V TF R V + YG TE AG ++ P + + G VG PV V LE V +M
Sbjct: 425 TPVLTFFRAAMGCWVFEAYGQTECTAGCSITSPGDWTA-GHVGTPVSCNFVKLEDVADMN 483
Query: 459 YDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTG-MGVW 504
Y S GE+C+KG+ VF GY K + T+EV+ DGW HTG +G W
Sbjct: 484 Y--FSVNNEGEICIKGNNVFKGYLKDPEKTQEVLDKDGWLHTGDIGRW 529
|
Acyl-CoA synthetases (ACSL) activates long-chain fatty acids for both synthesis of cellular lipids, and degradation via beta-oxidation. ACSL5 may sensitize epithelial cells to apoptosis specifically triggered by the death ligand TRAIL at the villus tip of the crypt-villus axis of the small intestine (By similarity). May have a role in the survival of glioma cells (By similarity). May activate fatty acids from exogenous sources for the synthesis of triacylglycerol destined for intracellular storage. It was suggested that it may also stimulate fatty acid oxidation. Utilizes a wide range of saturated fatty acids with a preference for C16-C18 unsaturated fatty acids. Rattus norvegicus (taxid: 10116) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 507 | ||||||
| 170676820 | 665 | long-chain acyl-CoA synthetase 4 [Ricinu | 0.988 | 0.753 | 0.794 | 0.0 | |
| 225426350 | 662 | PREDICTED: long chain acyl-CoA synthetas | 0.996 | 0.762 | 0.794 | 0.0 | |
| 83320523 | 656 | ACS1 [Ricinus communis] | 0.982 | 0.759 | 0.795 | 0.0 | |
| 224075096 | 662 | predicted protein [Populus trichocarpa] | 0.996 | 0.762 | 0.784 | 0.0 | |
| 147810382 | 654 | hypothetical protein VITISV_035299 [Viti | 0.978 | 0.758 | 0.806 | 0.0 | |
| 74147576 | 662 | ACS-like protein [Gossypium hirsutum] | 0.996 | 0.762 | 0.778 | 0.0 | |
| 224053783 | 662 | predicted protein [Populus trichocarpa] | 0.996 | 0.762 | 0.778 | 0.0 | |
| 356497309 | 662 | PREDICTED: long chain acyl-CoA synthetas | 0.996 | 0.762 | 0.768 | 0.0 | |
| 74147588 | 663 | ACS-like protein [Gossypium hirsutum] | 0.986 | 0.754 | 0.760 | 0.0 | |
| 449464058 | 660 | PREDICTED: long chain acyl-CoA synthetas | 0.998 | 0.766 | 0.759 | 0.0 |
| >gi|170676820|gb|ACB30545.1| long-chain acyl-CoA synthetase 4 [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 851 bits (2198), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/502 (79%), Positives = 454/502 (90%), Gaps = 1/502 (0%)
Query: 5 KYVVEVEKAKEASGGRPSIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNRMLG 64
KY++EVEKAKEA G+PS+GPVYRSLFAKDGFP PIPG++SCWDVFRM+VE+ PNN MLG
Sbjct: 8 KYLIEVEKAKEAKDGKPSVGPVYRSLFAKDGFPPPIPGLDSCWDVFRMSVEKYPNNPMLG 67
Query: 65 QREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACN 124
RE V+GKAGKYVW+TYK+VYDLVIKV NAIR+CGVE KCGIYG N EWI+ MEACN
Sbjct: 68 HREFVNGKAGKYVWQTYKQVYDLVIKVGNAIRSCGVEPGEKCGIYGANSAEWIMSMEACN 127
Query: 125 ALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKV 184
A GL+CVPLYDTLGAGAVE+IICH+ VSIAFVEEKKIPE+LKTFP +++KTIVSF +
Sbjct: 128 AHGLYCVPLYDTLGAGAVEYIICHAEVSIAFVEEKKIPELLKTFPSAAQYIKTIVSFGNI 187
Query: 185 KPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSN 244
EQREE+EK+GL YSW++FL+LGENKQ+DLP KKK+DICTIMYTSGTTGDPKGVM+SN
Sbjct: 188 AREQREEMEKFGLVAYSWEDFLKLGENKQYDLPEKKKSDICTIMYTSGTTGDPKGVMISN 247
Query: 245 ENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVK 304
++IVT IAGV+ LLESVNE+LTSEDVY+SYLPLAHIFDR IEE+FIS+GA+IGFWRGDVK
Sbjct: 248 DSIVTIIAGVRRLLESVNEQLTSEDVYLSYLPLAHIFDRVIEELFISHGASIGFWRGDVK 307
Query: 305 LLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKH 364
LL+EDIGELKPTIFCAVPRVLDRI+SGL QKISSGG LK LFN+AYSYK +KKG H
Sbjct: 308 LLIEDIGELKPTIFCAVPRVLDRIHSGLTQKISSGGFLKNKLFNLAYSYKLSCMKKGLAH 367
Query: 365 VEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCA 424
EASP++DK+VFDKVKQ GG+VRLILSGAAPL HVE FLRVV+CAHVLQGYGLTETCA
Sbjct: 368 DEASPLSDKLVFDKVKQGLGGKVRLILSGAAPLAIHVEAFLRVVSCAHVLQGYGLTETCA 427
Query: 425 GTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKR 484
GTFVSLPNEM+M+GTVGPPVPNVDVCLESVPEM YDALSSTPRGE+CV+GSTVF+GYYKR
Sbjct: 428 GTFVSLPNEMAMLGTVGPPVPNVDVCLESVPEMNYDALSSTPRGEICVRGSTVFAGYYKR 487
Query: 485 EDLTKEVMVDGWFHTG-MGVWE 505
EDLTKEV++DGWFHTG +G W+
Sbjct: 488 EDLTKEVLIDGWFHTGDIGEWQ 509
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225426350|ref|XP_002270385.1| PREDICTED: long chain acyl-CoA synthetase 4 [Vitis vinifera] gi|297742330|emb|CBI34479.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 850 bits (2196), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/506 (79%), Positives = 456/506 (90%), Gaps = 1/506 (0%)
Query: 1 MSNMKYVVEVEKAKEASGGRPSIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNN 60
M+ ++++E+EKAKEA GRPSIGPVYRS FA+DGFP PI GMESCWDVFR+AVE+ P N
Sbjct: 1 MAQKRFIIEMEKAKEAKDGRPSIGPVYRSSFARDGFPKPIEGMESCWDVFRLAVEKYPGN 60
Query: 61 RMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120
RMLGQREIV+GKAGKYVW TYKEVYD V+KV N+IR+CGV E G+CGIYG N EWI+ M
Sbjct: 61 RMLGQREIVNGKAGKYVWLTYKEVYDKVMKVGNSIRSCGVNEGGRCGIYGANSAEWIMSM 120
Query: 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVS 180
EACNA GL+CVPLYDTLGAGAVEFIICHS +SI FVEEKKIPE+LKTFP TTE+LKTIVS
Sbjct: 121 EACNAHGLYCVPLYDTLGAGAVEFIICHSELSIVFVEEKKIPEVLKTFPNTTEYLKTIVS 180
Query: 181 FSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGV 240
F KV PEQREE+EK+GLA+Y W+EFLQLG++K+FDLP+ KKNDICTIMYTSGTTGDPKGV
Sbjct: 181 FGKVTPEQREEVEKFGLAIYYWEEFLQLGDDKKFDLPLTKKNDICTIMYTSGTTGDPKGV 240
Query: 241 MVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWR 300
M+SNE+IVT IAGVK LL+SVNE+L +DV++SYLPLAHIFDR IEE+FIS+GA+IGFWR
Sbjct: 241 MISNESIVTLIAGVKRLLQSVNEELNEKDVFISYLPLAHIFDRVIEELFISHGASIGFWR 300
Query: 301 GDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKK 360
GDVKLL+EDIGELKPTIFCAVPRVLDRIYSGL QKIS+GGLL+ TLFNIAY YK +NL K
Sbjct: 301 GDVKLLVEDIGELKPTIFCAVPRVLDRIYSGLKQKISAGGLLRNTLFNIAYKYKQYNLWK 360
Query: 361 GHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLT 420
G K +EA+PI DKIVF KVKQ GG VRLILSGAAPL+ HVE +LRVV CAHVLQGYGLT
Sbjct: 361 GVKTLEAAPICDKIVFGKVKQGLGGNVRLILSGAAPLSTHVEAYLRVVTCAHVLQGYGLT 420
Query: 421 ETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSG 480
ETCAGTFVSLPNE+SM+GTVGPPVPNVDVCLESVPEM YDALSSTPRGE+C++G T+FSG
Sbjct: 421 ETCAGTFVSLPNEISMLGTVGPPVPNVDVCLESVPEMGYDALSSTPRGEICIRGKTLFSG 480
Query: 481 YYKREDLTKEVMVDGWFHTG-MGVWE 505
YYKREDLTKEV+VDGWFHTG +G W+
Sbjct: 481 YYKREDLTKEVLVDGWFHTGDVGEWQ 506
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|83320523|gb|ABC02880.1| ACS1 [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 845 bits (2184), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/499 (79%), Positives = 451/499 (90%), Gaps = 1/499 (0%)
Query: 8 VEVEKAKEASGGRPSIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNRMLGQRE 67
+EVEKAKEA G+PS+GPVYRSLFAKDGFP PIPG++SCWDVFRM+VE+ PNN MLG RE
Sbjct: 2 IEVEKAKEAKDGKPSVGPVYRSLFAKDGFPPPIPGLDSCWDVFRMSVEKYPNNPMLGHRE 61
Query: 68 IVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALG 127
V+GKAGKYVW+TYK+VYDLVIKV NAIR+CGVE KCGIYG N EWI+ MEACNA G
Sbjct: 62 FVNGKAGKYVWQTYKQVYDLVIKVGNAIRSCGVEPGEKCGIYGANSAEWIMSMEACNAHG 121
Query: 128 LHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPE 187
L+CVPLYDTLGAGAVE+IICH+ VSIAFVEEKKIPE+LKTFP +++KTIVSF + E
Sbjct: 122 LYCVPLYDTLGAGAVEYIICHAEVSIAFVEEKKIPELLKTFPSAAQYIKTIVSFGNIARE 181
Query: 188 QREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENI 247
QREE+EK+GL YSW++FL+LGENKQ+DLP KKK+DICTIMYTSGTTGDPKGVM+SN++I
Sbjct: 182 QREEMEKFGLVAYSWEDFLKLGENKQYDLPEKKKSDICTIMYTSGTTGDPKGVMISNDSI 241
Query: 248 VTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKLLL 307
VT IAGV+ LLESVNE+LTSEDVY+SYLPLAHIFDR IEE+FIS+GA+IGFWRGDVKLL+
Sbjct: 242 VTIIAGVRRLLESVNEQLTSEDVYLSYLPLAHIFDRVIEELFISHGASIGFWRGDVKLLI 301
Query: 308 EDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEA 367
EDIGELKPTIFCAVPRVLDRI+SGL QKISSGG LK LFN+AYSYK +KKG H EA
Sbjct: 302 EDIGELKPTIFCAVPRVLDRIHSGLTQKISSGGFLKNKLFNLAYSYKLSCMKKGLAHDEA 361
Query: 368 SPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTF 427
SP++DK+VFDKVKQ GG+VRLILSGAAPL HVE FLRVV+CAHVLQGYGLTETCAGTF
Sbjct: 362 SPLSDKLVFDKVKQGLGGKVRLILSGAAPLAIHVEAFLRVVSCAHVLQGYGLTETCAGTF 421
Query: 428 VSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDL 487
VSLPNEM+M+GTVGPPVPNVDVCLESVPEM YDALSSTPRGE+CV+GSTVF+GYYKREDL
Sbjct: 422 VSLPNEMAMLGTVGPPVPNVDVCLESVPEMNYDALSSTPRGEICVRGSTVFAGYYKREDL 481
Query: 488 TKEVMVDGWFHTG-MGVWE 505
TKEV++DGWFHTG +G W+
Sbjct: 482 TKEVLIDGWFHTGDIGEWQ 500
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224075096|ref|XP_002304555.1| predicted protein [Populus trichocarpa] gi|222841987|gb|EEE79534.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 843 bits (2178), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/506 (78%), Positives = 458/506 (90%), Gaps = 1/506 (0%)
Query: 1 MSNMKYVVEVEKAKEASGGRPSIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNN 60
M+ KY++EVEKAKEA G+PSIGPVYRSLFAKDGFP P+PG+ESCWDVFRM+VE+ PNN
Sbjct: 1 MAPRKYLIEVEKAKEAKDGKPSIGPVYRSLFAKDGFPPPVPGLESCWDVFRMSVEKYPNN 60
Query: 61 RMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120
MLG+REIV+GKAGKYVW+TYK+VYD+VIKV N+IR+CGVE KCGIYG NC EWI+ M
Sbjct: 61 PMLGRREIVNGKAGKYVWQTYKQVYDVVIKVGNSIRSCGVEPGAKCGIYGANCAEWIMSM 120
Query: 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVS 180
EACNA GL+CVPLYDTLGA AVEFIICHS VSIAFVEE KI E+LKTFP +T++LKTIVS
Sbjct: 121 EACNAHGLYCVPLYDTLGASAVEFIICHSEVSIAFVEENKICELLKTFPNSTQYLKTIVS 180
Query: 181 FSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGV 240
F KV +++EEIEK GLAVYSWDEFL+LGENKQ++LPVKKK DICTIMYTSGTTGDPKGV
Sbjct: 181 FGKVALKEQEEIEKSGLAVYSWDEFLKLGENKQYELPVKKKEDICTIMYTSGTTGDPKGV 240
Query: 241 MVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWR 300
++SN++IVT IAGVK LLESV E LTSEDVY+SYLPLAHIFDR IEE+FI +GA+IGFWR
Sbjct: 241 LISNDSIVTLIAGVKRLLESVKESLTSEDVYLSYLPLAHIFDRVIEELFIQHGASIGFWR 300
Query: 301 GDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKK 360
GDVKLL+EDIGELKPTIFCAVPRVL+R+YSGL QK+S+GG LKKTLFN+AYS+KF ++KK
Sbjct: 301 GDVKLLIEDIGELKPTIFCAVPRVLERVYSGLQQKVSTGGFLKKTLFNVAYSHKFSSMKK 360
Query: 361 GHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLT 420
G H +ASPI DKIVF+KV+Q GG+VRLILSGAAPL+ HVE FLRVV+CAHVLQGYGLT
Sbjct: 361 GLAHHQASPICDKIVFNKVRQGLGGKVRLILSGAAPLSNHVEAFLRVVSCAHVLQGYGLT 420
Query: 421 ETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSG 480
ETCAGTFVSLPNE+ M+GTVGPPVPNVDVCLESVPEM YDALSSTPRGE+C++G T+F+G
Sbjct: 421 ETCAGTFVSLPNELPMLGTVGPPVPNVDVCLESVPEMGYDALSSTPRGEICIRGKTLFAG 480
Query: 481 YYKREDLTKEVMVDGWFHTG-MGVWE 505
YYKREDLT+EV+ DGWFHTG +G W+
Sbjct: 481 YYKREDLTEEVLNDGWFHTGDIGEWQ 506
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147810382|emb|CAN67631.1| hypothetical protein VITISV_035299 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 843 bits (2178), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 401/497 (80%), Positives = 450/497 (90%), Gaps = 1/497 (0%)
Query: 10 VEKAKEASGGRPSIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIV 69
+EKAKEA GRPSIGPVYRS FA+DGFP PI GMESCWDVFR+AVE+ P NRMLGQREIV
Sbjct: 1 MEKAKEAKDGRPSIGPVYRSSFARDGFPKPIEGMESCWDVFRLAVEKYPGNRMLGQREIV 60
Query: 70 DGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLH 129
+GKAGKYVW TYKEVYD V+KV N+IR+CGV E G+CGIYG N EWI+ MEACNA GL+
Sbjct: 61 NGKAGKYVWLTYKEVYDKVMKVGNSIRSCGVNEGGRCGIYGANSAEWIMSMEACNAHGLY 120
Query: 130 CVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQR 189
CVPLYDTLGAGAVEFIICHS +SI FVEEKKIPE+LKTFP TTE+LKTIVSF KV PEQR
Sbjct: 121 CVPLYDTLGAGAVEFIICHSELSIVFVEEKKIPEVLKTFPNTTEYLKTIVSFGKVTPEQR 180
Query: 190 EEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVT 249
EE+EK+GLA+YSW+EFLQLG++K+FDLP+ KKNDICTIMYTSGTTGDPKGVM+SNE+IVT
Sbjct: 181 EEVEKFGLAIYSWEEFLQLGDDKKFDLPLTKKNDICTIMYTSGTTGDPKGVMISNESIVT 240
Query: 250 FIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKLLLED 309
IAGVK LL+SVNE+L +DV++SYLPLAHIFDR IEE+FIS+GA+IGFWRGDVKLL+ED
Sbjct: 241 LIAGVKRLLQSVNEELNEKDVFISYLPLAHIFDRVIEELFISHGASIGFWRGDVKLLVED 300
Query: 310 IGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASP 369
IGELKPTIFCAVPRVLDRIYSGL QKIS+GGLL+ TLFNIAY YK +NL KG K +EA+P
Sbjct: 301 IGELKPTIFCAVPRVLDRIYSGLKQKISAGGLLRNTLFNIAYKYKQYNLWKGVKTLEAAP 360
Query: 370 IADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVS 429
I DKIVF KVKQ GG VRLILSGAAPL+ HVE +LRVV CAHVLQGYGLTETCAGTFVS
Sbjct: 361 ICDKIVFGKVKQGLGGNVRLILSGAAPLSTHVEAYLRVVTCAHVLQGYGLTETCAGTFVS 420
Query: 430 LPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTK 489
LPNE+SM+GTVGPPVPNVDVCLESVPEM YDALSSTPRGE+C++G T+FSGYYKREDLTK
Sbjct: 421 LPNEISMLGTVGPPVPNVDVCLESVPEMGYDALSSTPRGEICIRGKTLFSGYYKREDLTK 480
Query: 490 EVMVDGWFHTG-MGVWE 505
EV+VDGWFHTG +G W+
Sbjct: 481 EVLVDGWFHTGDVGEWQ 497
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|74147576|gb|ABA00144.1| ACS-like protein [Gossypium hirsutum] | Back alignment and taxonomy information |
|---|
Score = 843 bits (2177), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/506 (77%), Positives = 456/506 (90%), Gaps = 1/506 (0%)
Query: 1 MSNMKYVVEVEKAKEASGGRPSIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNN 60
M+ +V+EVEK K+AS G+PSIGPVYRS FA +GFPAPIPGMESCWD+FRM+VE+ P+N
Sbjct: 1 MAGNNFVIEVEKGKDASDGQPSIGPVYRSSFAANGFPAPIPGMESCWDIFRMSVEKYPDN 60
Query: 61 RMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120
RMLG+R+IVDGKAGKYVW+TY+EVYD+VIKV N+IR+C V E GKCGIYG NCPEWII M
Sbjct: 61 RMLGRRQIVDGKAGKYVWQTYREVYDIVIKVGNSIRSCDVVEGGKCGIYGANCPEWIISM 120
Query: 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVS 180
EACNA GL+CVPLYDTLGAGAVEFIICH+ +SIAFVEEKKI E+ KTFP +TEHLKTIVS
Sbjct: 121 EACNAHGLYCVPLYDTLGAGAVEFIICHAEISIAFVEEKKINELFKTFPASTEHLKTIVS 180
Query: 181 FSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGV 240
F KV PEQ+ E EK+GL +Y W+EFLQLGENK + LPVKKK DICTIMYTSGTTGDPKGV
Sbjct: 181 FGKVTPEQKAEAEKHGLKIYPWEEFLQLGENKNYGLPVKKKTDICTIMYTSGTTGDPKGV 240
Query: 241 MVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWR 300
+SN++IVT IAGVK LL SVNE+LT +DVY+SYLPLAHIFDR IEE+FIS+GA+IGFWR
Sbjct: 241 FISNDSIVTLIAGVKRLLGSVNEQLTMKDVYISYLPLAHIFDRVIEELFISHGASIGFWR 300
Query: 301 GDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKK 360
GDVKLL+EDIGELKP+IFCAVPRVLDRIYSGL QKIS+GGLLKK +F++AY+YK++N+KK
Sbjct: 301 GDVKLLVEDIGELKPSIFCAVPRVLDRIYSGLLQKISAGGLLKKKMFDLAYTYKYYNMKK 360
Query: 361 GHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLT 420
G KH EASPI DKIVF KVKQ GG VRLILSGAAPL+ HVE FLRVVAC HVLQGYGLT
Sbjct: 361 GRKHGEASPICDKIVFSKVKQGLGGNVRLILSGAAPLSTHVEEFLRVVACCHVLQGYGLT 420
Query: 421 ETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSG 480
E+CAG+FVSLPNE+SM+GTVGPPVPN+DV LESVPEM YDAL+STPRGE+C+KG+T+FSG
Sbjct: 421 ESCAGSFVSLPNELSMLGTVGPPVPNIDVRLESVPEMNYDALASTPRGEICIKGNTLFSG 480
Query: 481 YYKREDLTKEVMVDGWFHTG-MGVWE 505
YYKREDLT+EV++DGWFHTG +G W+
Sbjct: 481 YYKREDLTREVLIDGWFHTGDIGEWQ 506
|
Source: Gossypium hirsutum Species: Gossypium hirsutum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224053783|ref|XP_002297977.1| predicted protein [Populus trichocarpa] gi|222845235|gb|EEE82782.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 840 bits (2171), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/506 (77%), Positives = 453/506 (89%), Gaps = 1/506 (0%)
Query: 1 MSNMKYVVEVEKAKEASGGRPSIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNN 60
M KY+VEVEKAKEA GRPS GPVYRSLFAKDGFP P+PG+ESCWD+FRM+VE+ PNN
Sbjct: 1 MEQRKYLVEVEKAKEAIDGRPSTGPVYRSLFAKDGFPPPVPGLESCWDIFRMSVEKYPNN 60
Query: 61 RMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120
MLG REIV+GKAG YVW+TYK+VYD V++V N+IR+CGVE KCGIYG NC EW++ M
Sbjct: 61 PMLGCREIVNGKAGNYVWQTYKQVYDTVVQVGNSIRSCGVEPGAKCGIYGANCAEWVMSM 120
Query: 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVS 180
EACNA GL+CVPLYDTLGA AVEFIICHS VSIAFVEEKKI E+LKTFP +T+++KTIVS
Sbjct: 121 EACNAHGLYCVPLYDTLGADAVEFIICHSEVSIAFVEEKKITELLKTFPNSTQYMKTIVS 180
Query: 181 FSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGV 240
F KV +++EEIEK+GLAVYSWDEFL LGENKQ++LPVKKK DICTIMYTSGTTGDPKGV
Sbjct: 181 FGKVASKEKEEIEKFGLAVYSWDEFLNLGENKQYELPVKKKEDICTIMYTSGTTGDPKGV 240
Query: 241 MVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWR 300
M+SN++IVT +AGVK LLESVNE LTS+DVY+SYLPLAHIFDR IEE+FI +GA+IGFWR
Sbjct: 241 MISNDSIVTLLAGVKRLLESVNEALTSKDVYLSYLPLAHIFDRVIEELFIQHGASIGFWR 300
Query: 301 GDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKK 360
GDVKLLLEDIGELKP+IFCAVPRVLDR+YSGL QK+S+GG L KTLFN+AYS+KF ++KK
Sbjct: 301 GDVKLLLEDIGELKPSIFCAVPRVLDRVYSGLQQKVSTGGFLTKTLFNLAYSHKFSSMKK 360
Query: 361 GHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLT 420
G H EASPI DKIVF+KV+Q GG VRLILSGAAPL+ HVE FLRVV+CAHVLQGYGLT
Sbjct: 361 GFAHDEASPICDKIVFNKVRQGLGGNVRLILSGAAPLSNHVEAFLRVVSCAHVLQGYGLT 420
Query: 421 ETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSG 480
ETCAGTFVSLPNE+ M+GTVGPPVPNVDV LESVPEM YDALSSTPRGE+C++G T+F+G
Sbjct: 421 ETCAGTFVSLPNELPMLGTVGPPVPNVDVFLESVPEMGYDALSSTPRGEICIRGKTLFAG 480
Query: 481 YYKREDLTKEVMVDGWFHTG-MGVWE 505
YYKREDLTKEV++DGWFHTG +G W+
Sbjct: 481 YYKREDLTKEVLIDGWFHTGDIGEWQ 506
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356497309|ref|XP_003517503.1| PREDICTED: long chain acyl-CoA synthetase 4-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 835 bits (2157), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/506 (76%), Positives = 450/506 (88%), Gaps = 1/506 (0%)
Query: 1 MSNMKYVVEVEKAKEASGGRPSIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNN 60
M+ ++++EVEKAKEAS GRPS GPVYRSLFAKDGFPAPI G+ SCWDVFR++VE+ P+N
Sbjct: 1 MAQKRFIIEVEKAKEASEGRPSRGPVYRSLFAKDGFPAPIQGLNSCWDVFRLSVEKYPSN 60
Query: 61 RMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120
MLG+REIVDGK GKY W TYKEVYD V+KV N+IR+CG E KCGIYG N EWI+ M
Sbjct: 61 PMLGRREIVDGKPGKYKWLTYKEVYDQVMKVGNSIRSCGYGEGVKCGIYGANSAEWIMSM 120
Query: 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVS 180
+ACNA GL+CVPLYDTLGAGA+EFIICH+ VSIAF EEKKIPE+LKTFP T++LKTIVS
Sbjct: 121 QACNAHGLYCVPLYDTLGAGAIEFIICHAEVSIAFAEEKKIPELLKTFPNATKYLKTIVS 180
Query: 181 FSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGV 240
F KV PEQ++E+E GL +YSWDEFLQ+G+N+ FDLP+KK++DICTIMYTSGTTGDPKGV
Sbjct: 181 FGKVTPEQKQEVENSGLEIYSWDEFLQVGQNQSFDLPIKKRSDICTIMYTSGTTGDPKGV 240
Query: 241 MVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWR 300
++SNE+I+T +AGVK LLESVNE+LT +DVY+SYLPLAHIFDR IEE FI +GA+IGFWR
Sbjct: 241 LISNESIITLLAGVKRLLESVNEQLTEKDVYISYLPLAHIFDRVIEETFIWHGASIGFWR 300
Query: 301 GDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKK 360
GDVKLL+ED+GELKPTIFCAVPRVLDR+YSGL QKISSGG LKKTLFN AYSYK +N+KK
Sbjct: 301 GDVKLLIEDVGELKPTIFCAVPRVLDRVYSGLTQKISSGGFLKKTLFNFAYSYKLNNMKK 360
Query: 361 GHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLT 420
G +H EASP+ DKIVFDKVKQ GGRVRLILSGAAPL+ HVE +LRVV CAHVLQGYGLT
Sbjct: 361 GLRHGEASPLLDKIVFDKVKQGLGGRVRLILSGAAPLSAHVEGYLRVVTCAHVLQGYGLT 420
Query: 421 ETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSG 480
ETCAGTFVSLPNE+ M+GTVGPPVPNVDVCLESVPEM YDAL+STPRGE+CVKG T+F+G
Sbjct: 421 ETCAGTFVSLPNEIEMLGTVGPPVPNVDVCLESVPEMGYDALASTPRGEICVKGKTLFAG 480
Query: 481 YYKREDLTKEVMVDGWFHTG-MGVWE 505
YYKREDLTKEV++D WFHTG +G W+
Sbjct: 481 YYKREDLTKEVLIDEWFHTGDIGEWQ 506
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|74147588|gb|ABA00145.1| ACS-like protein [Gossypium hirsutum] | Back alignment and taxonomy information |
|---|
Score = 831 bits (2147), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/501 (76%), Positives = 451/501 (90%), Gaps = 1/501 (0%)
Query: 6 YVVEVEKAKEASGGRPSIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNRMLGQ 65
Y+++VE+ K A+ RPSIGPVYRS FA++GFPAPIPGMESCWD+FRM+VE+ PN+ MLG
Sbjct: 7 YIIKVEEGKAATDERPSIGPVYRSCFAENGFPAPIPGMESCWDIFRMSVEKYPNHHMLGH 66
Query: 66 REIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNA 125
R+IVDGKAGKYVW+TYK+VYD+V+KV N+IR+CGVEE GKCGIYG NCPEWI+ MEACNA
Sbjct: 67 RQIVDGKAGKYVWQTYKQVYDIVMKVGNSIRSCGVEEGGKCGIYGANCPEWIMTMEACNA 126
Query: 126 LGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVK 185
GL CVPLYDTLGA AVEFIICH+ VSIAFVEEKKI E+ KTFP +T++L+TI+SF KV
Sbjct: 127 HGLSCVPLYDTLGADAVEFIICHAEVSIAFVEEKKIAELFKTFPNSTKYLRTIISFGKVT 186
Query: 186 PEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNE 245
PEQ+ E EK GLA+++W+EFLQLGENKQ+DLP+KKK DICTIMYTSGTTGDPKGV++SNE
Sbjct: 187 PEQKAEAEKQGLAIFTWEEFLQLGENKQYDLPIKKKTDICTIMYTSGTTGDPKGVLISNE 246
Query: 246 NIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKL 305
+I+T +A V CLL VNE+LT DVY+SYLPLAHIFDR IEE+FIS+GA+IGFWRGDVKL
Sbjct: 247 SIITLLAAVDCLLGRVNEELTMNDVYISYLPLAHIFDRVIEELFISHGASIGFWRGDVKL 306
Query: 306 LLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHV 365
LLEDIGELKP++FCAVPRVLDRIYSGL QKIS GGLLKKTLFN+AYS+KF+N++ G KH
Sbjct: 307 LLEDIGELKPSVFCAVPRVLDRIYSGLQQKISEGGLLKKTLFNVAYSFKFYNMRNGSKHA 366
Query: 366 EASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAG 425
EASP +D+IVF +VK+ GG +R+ILSGAAPL+ HVE FLRVVAC HV+QGYGLTETCAG
Sbjct: 367 EASPFSDRIVFSQVKERLGGNLRIILSGAAPLSSHVEEFLRVVACCHVMQGYGLTETCAG 426
Query: 426 TFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKRE 485
TFVSLP+E+SM+GTVGPPVPNVDV LESVPEM YDAL+STPRGE+C+KG+T+FSGY+KRE
Sbjct: 427 TFVSLPHELSMLGTVGPPVPNVDVRLESVPEMGYDALASTPRGEICLKGTTLFSGYFKRE 486
Query: 486 DLTKEVMVDGWFHTG-MGVWE 505
DLTKEVM+DGWFHTG +G W+
Sbjct: 487 DLTKEVMIDGWFHTGDIGEWQ 507
|
Source: Gossypium hirsutum Species: Gossypium hirsutum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449464058|ref|XP_004149746.1| PREDICTED: long chain acyl-CoA synthetase 4-like [Cucumis sativus] gi|449505070|ref|XP_004162367.1| PREDICTED: long chain acyl-CoA synthetase 4-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 830 bits (2145), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/507 (75%), Positives = 451/507 (88%), Gaps = 1/507 (0%)
Query: 1 MSNMKYVVEVEKAKEASGGRPSIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNN 60
MS MKY++EVEK+K A GRPSIGPVYRS+FAKDGFP PI G++SCWD+FR++VERNP N
Sbjct: 1 MSQMKYLIEVEKSKSAIDGRPSIGPVYRSIFAKDGFPLPIQGLDSCWDIFRLSVERNPGN 60
Query: 61 RMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120
RMLG REIV+GKAGKYVW TYKEVYD V+KV N++RT G E+ KCGIYG NC EWII M
Sbjct: 61 RMLGHREIVNGKAGKYVWLTYKEVYDTVVKVGNSLRTRGFEQGVKCGIYGANCSEWIISM 120
Query: 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVS 180
EACNA GL+CVPLYDTLGAGAVEFIICHS +S+AFVEEKK+PE+LKTFP TT++LKTIVS
Sbjct: 121 EACNAHGLYCVPLYDTLGAGAVEFIICHSEISVAFVEEKKLPEVLKTFPSTTKYLKTIVS 180
Query: 181 FSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGV 240
F KV P REE EK+G+ ++SWDEFL LGEN+ FDLPVKKK+DI TIMYTSGTTGDPKGV
Sbjct: 181 FGKVTPNLREEFEKHGVEIFSWDEFLLLGENQHFDLPVKKKSDISTIMYTSGTTGDPKGV 240
Query: 241 MVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWR 300
M+SN++I++ IAGV+ LLE+VNE+L+ +DVY+SYLPLAHIFDR IEE+FI +GA+IGFWR
Sbjct: 241 MISNKSIISLIAGVQRLLENVNEELSPKDVYLSYLPLAHIFDRVIEELFILHGASIGFWR 300
Query: 301 GDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKK 360
GDVKL++EDIGELKP+IFCAVPRVLDRIY+GL Q++ GGLLK+TLFN+A+S K+ N++K
Sbjct: 301 GDVKLIIEDIGELKPSIFCAVPRVLDRIYAGLTQRLDQGGLLKRTLFNVAFSRKYGNMQK 360
Query: 361 GHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLT 420
GHKH EASPI D+ VF+KVK+ GG VRLILSGAAPL HVE FLRVVACAHVLQGYGLT
Sbjct: 361 GHKHSEASPICDRFVFNKVKEGLGGNVRLILSGAAPLATHVEAFLRVVACAHVLQGYGLT 420
Query: 421 ETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSG 480
ETCAGTFVSLPNE+SM+GTVGPPVPNVDVCLESVPEM YDALS+TPRGE+CV+G +FSG
Sbjct: 421 ETCAGTFVSLPNELSMLGTVGPPVPNVDVCLESVPEMGYDALSTTPRGEICVRGDPLFSG 480
Query: 481 YYKREDLTKEVMVDGWFHTG-MGVWEQ 506
YYKR+DLT EVM+DGWFHTG +G W+
Sbjct: 481 YYKRDDLTNEVMIDGWFHTGDIGEWQS 507
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 507 | ||||||
| TAIR|locus:2138141 | 666 | LACS4 "long-chain acyl-CoA syn | 0.988 | 0.752 | 0.735 | 5.7e-210 | |
| TAIR|locus:2136148 | 666 | AT4G11030 [Arabidopsis thalian | 0.994 | 0.756 | 0.706 | 5.2e-207 | |
| TAIR|locus:2014265 | 665 | LACS3 "long-chain acyl-CoA syn | 0.996 | 0.759 | 0.682 | 1.2e-198 | |
| TAIR|locus:2010177 | 665 | LACS2 "long-chain acyl-CoA syn | 0.984 | 0.750 | 0.502 | 1.4e-142 | |
| TAIR|locus:2065195 | 660 | LACS1 "AT2G47240" [Arabidopsis | 0.978 | 0.751 | 0.482 | 6.9e-134 | |
| TAIR|locus:2143661 | 700 | LACS7 "AT5G27600" [Arabidopsis | 0.893 | 0.647 | 0.391 | 5e-83 | |
| TAIR|locus:2083013 | 701 | LACS6 "AT3G05970" [Arabidopsis | 0.893 | 0.646 | 0.397 | 7.4e-82 | |
| DICTYBASE|DDB_G0269242 | 667 | fcsA "long-chain-fatty-acid-Co | 0.877 | 0.667 | 0.390 | 2e-81 | |
| DICTYBASE|DDB_G0269474 | 673 | fcsB "fatty acyl-CoA synthetas | 0.891 | 0.671 | 0.348 | 3.9e-76 | |
| UNIPROTKB|E2R463 | 698 | ACSL5 "Uncharacterized protein | 0.881 | 0.640 | 0.377 | 2.1e-75 |
| TAIR|locus:2138141 LACS4 "long-chain acyl-CoA synthetase 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2030 (719.7 bits), Expect = 5.7e-210, P = 5.7e-210
Identities = 369/502 (73%), Positives = 435/502 (86%)
Query: 5 KYVVEVEKAKEASGGRPSIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNRMLG 64
KY+ +VE+ KE S GRPS+GPVYRS+FAKDGFP PI GM+SCWDVFRM+VE+ PNN MLG
Sbjct: 6 KYIFQVEEGKEGSDGRPSVGPVYRSIFAKDGFPDPIEGMDSCWDVFRMSVEKYPNNPMLG 65
Query: 65 QREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACN 124
+REIVDGK GKYVW+TY+EVYD+V+K+ N++R+ GV++ KCGIYG N PEWII MEACN
Sbjct: 66 RREIVDGKPGKYVWQTYQEVYDIVMKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEACN 125
Query: 125 ALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKV 184
A GL+CVPLYDTLGA AVEFII HS VSI FVEEKKI E+ KT P +TE++KT+VSF V
Sbjct: 126 AHGLYCVPLYDTLGADAVEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVSFGGV 185
Query: 185 KPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSN 244
EQ+EE E +GL +Y+WDEFL+LGE KQ+DLP+KKK+DICTIMYTSGTTGDPKGVM+SN
Sbjct: 186 SREQKEEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMISN 245
Query: 245 ENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVK 304
E+IVT IAGV LL+S NE LT +DVY+SYLPLAHIFDR IEE FI +GAAIGFWRGDVK
Sbjct: 246 ESIVTLIAGVIRLLKSANEALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGDVK 305
Query: 305 LLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKH 364
LL+ED+ ELKPTIFCAVPRVLDR+YSGL +K+S GG LKK +F+ A+SYKF +KKG H
Sbjct: 306 LLIEDLAELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFIFDSAFSYKFGYMKKGQSH 365
Query: 365 VEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCA 424
VEASP+ DK+VF KVKQ GG VR+ILSGAAPL HVE+FLRVVAC HVLQGYGLTE+CA
Sbjct: 366 VEASPLFDKLVFSKVKQGLGGNVRIILSGAAPLASHVESFLRVVACCHVLQGYGLTESCA 425
Query: 425 GTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKR 484
GTFVSLP+E+ M+GTVGPPVPNVD+ LESVPEMEYDAL+ST RGE+C++G T+FSGYYKR
Sbjct: 426 GTFVSLPDELGMLGTVGPPVPNVDIRLESVPEMEYDALASTARGEICIRGKTLFSGYYKR 485
Query: 485 EDLTKEVMVDGWFHTG-MGVWE 505
EDLTKEV++DGW HTG +G W+
Sbjct: 486 EDLTKEVLIDGWLHTGDVGEWQ 507
|
|
| TAIR|locus:2136148 AT4G11030 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2002 (709.8 bits), Expect = 5.2e-207, P = 5.2e-207
Identities = 357/505 (70%), Positives = 432/505 (85%)
Query: 2 SNMKYVVEVEKAKEASGGRPSIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNR 61
S +++ EVE AKEA+ G PS+GPVYRS FA++GFP PI G++SCWD+FR AVE+ PNNR
Sbjct: 3 SQKRFIFEVEAAKEATDGNPSVGPVYRSTFAQNGFPNPIDGIQSCWDIFRTAVEKYPNNR 62
Query: 62 MLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGME 121
MLG+REI +GKAGKYVWKTYKEVYD+VIK+ N++R+CG++E KCGIYG+NC EWII ME
Sbjct: 63 MLGRREISNGKAGKYVWKTYKEVYDIVIKLGNSLRSCGIKEGEKCGIYGINCCEWIISME 122
Query: 122 ACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSF 181
ACNA GL+CVPLYDTLGAGAVEFII H+ VSIAFVEEKKIPE+ KT P +T+++KT+VSF
Sbjct: 123 ACNAHGLYCVPLYDTLGAGAVEFIISHAEVSIAFVEEKKIPELFKTCPNSTKYMKTVVSF 182
Query: 182 SKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVM 241
VKPEQ+EE EK GL ++SWDEFL+LGE KQ++LP+KK +DICTIMYTSGTTGDPKGVM
Sbjct: 183 GGVKPEQKEEAEKLGLVIHSWDEFLKLGEGKQYELPIKKPSDICTIMYTSGTTGDPKGVM 242
Query: 242 VSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRG 301
+SNE+IVT GV L +VN L+ +DVY+SYLPLAH+FDRAIEE I G +IGFWRG
Sbjct: 243 ISNESIVTITTGVMHFLGNVNASLSEKDVYISYLPLAHVFDRAIEECIIQVGGSIGFWRG 302
Query: 302 DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKG 361
DVKLL+ED+GELKP+IFCAVPRVLDR+Y+GL QK+S GG KK +F++A+SYKF N+KKG
Sbjct: 303 DVKLLIEDLGELKPSIFCAVPRVLDRVYTGLQQKLSGGGFFKKKVFDVAFSYKFGNMKKG 362
Query: 362 HKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTE 421
HV ASP DK+VF+KVKQ GG VR+ILSGAAPL H+E+FLRVVAC +VLQGYGLTE
Sbjct: 363 QSHVAASPFCDKLVFNKVKQGLGGNVRIILSGAAPLASHIESFLRVVACCNVLQGYGLTE 422
Query: 422 TCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGY 481
+CAGTF + P+E+ M+GTVGPPVPNVD+ LESVPEM YDAL STPRGE+C++G T+FSGY
Sbjct: 423 SCAGTFATFPDELDMLGTVGPPVPNVDIRLESVPEMNYDALGSTPRGEICIRGKTLFSGY 482
Query: 482 YKREDLTKEVMVDGWFHTG-MGVWE 505
YKREDLTKEV +DGW HTG +G W+
Sbjct: 483 YKREDLTKEVFIDGWLHTGDVGEWQ 507
|
|
| TAIR|locus:2014265 LACS3 "long-chain acyl-CoA synthetase 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1923 (682.0 bits), Expect = 1.2e-198, P = 1.2e-198
Identities = 346/507 (68%), Positives = 430/507 (84%)
Query: 1 MSNMKYVVEVEKAKEA-SGGRPSIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPN 59
M+ +Y+VEVEK K+ GG PS+GPVYRS++AKDGFP P + S WD+FR++VE++PN
Sbjct: 1 MATGRYIVEVEKGKQGVDGGSPSVGPVYRSIYAKDGFPEPPDDLVSAWDIFRLSVEKSPN 60
Query: 60 NRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIG 119
N MLG+REIVDGKAGKYVW+TYKEV+++VIK+ N+IRT GV + KCGIYG N PEWII
Sbjct: 61 NPMLGRREIVDGKAGKYVWQTYKEVHNVVIKLGNSIRTIGVGKGDKCGIYGANSPEWIIS 120
Query: 120 MEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIV 179
MEACNA GL+CVPLYDTLGAGA+EFIICH+ VS+AF EE KI E+LKT PK+T++LK IV
Sbjct: 121 MEACNAHGLYCVPLYDTLGAGAIEFIICHAEVSLAFAEENKISELLKTAPKSTKYLKYIV 180
Query: 180 SFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKG 239
SF +V QR E E++ L +YSWD+FL+LGE K ++LP K+++D+CTIMYTSGTTGDPKG
Sbjct: 181 SFGEVTNNQRVEAERHRLTIYSWDQFLKLGEGKHYELPEKRRSDVCTIMYTSGTTGDPKG 240
Query: 240 VMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFW 299
V+++NE+I+ + GVK LL++++E+LTS+DVY+SYLPLAHIFDR IEE+ I A+IGFW
Sbjct: 241 VLLTNESIIHLLEGVKKLLKTIDEELTSKDVYLSYLPLAHIFDRVIEELCIYEAASIGFW 300
Query: 300 RGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLK 359
RGDVK+L+EDI LKPT+FCAVPRVL+RIY+GL QK+S GG +KK LFN A+ YK N++
Sbjct: 301 RGDVKILIEDIAALKPTVFCAVPRVLERIYTGLQQKLSDGGFVKKKLFNFAFKYKHKNME 360
Query: 360 KGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGL 419
KG H +ASPIADKIVF KVK+ GG VRLILSGAAPL H+E+FLRVVACAHVLQGYGL
Sbjct: 361 KGQPHEQASPIADKIVFKKVKEGLGGNVRLILSGAAPLAAHIESFLRVVACAHVLQGYGL 420
Query: 420 TETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFS 479
TE+C GTFVS+PNE+SM+GTVGPPVPNVD+ LESVPEM YDAL+S PRGE+C++G T+FS
Sbjct: 421 TESCGGTFVSIPNELSMLGTVGPPVPNVDIRLESVPEMGYDALASNPRGEICIRGKTLFS 480
Query: 480 GYYKREDLTKEVMVDGWFHTG-MGVWE 505
GYYKREDLT+EV +DGW HTG +G W+
Sbjct: 481 GYYKREDLTQEVFIDGWLHTGDVGEWQ 507
|
|
| TAIR|locus:2010177 LACS2 "long-chain acyl-CoA synthetase 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1394 (495.8 bits), Expect = 1.4e-142, P = 1.4e-142
Identities = 253/503 (50%), Positives = 361/503 (71%)
Query: 7 VVEVEKAKEASGGRPSIGPVYRSLFAKDGFPAPIP-GMESCWDVFRMAVERNPNNRMLGQ 65
V+ VE+ + A+ PS GPVYR +AKDG +P ++S W F AV++ PN +MLGQ
Sbjct: 8 VLLVEEGRPATAEHPSAGPVYRCKYAKDGL-LDLPTDIDSPWQFFSEAVKKYPNEQMLGQ 66
Query: 66 REIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNA 125
R D K G Y W TYKE +D I++ +AIR+ GV+ CGIYG NCPEWII MEAC +
Sbjct: 67 RVTTDSKVGPYTWITYKEAHDAAIRIGSAIRSRGVDPGHCCGIYGANCPEWIIAMEACMS 126
Query: 126 LGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVK 185
G+ VPLYD+LG AVEFII H+ VS+ FV+EK + +L + +LKTIVSF +V
Sbjct: 127 QGITYVPLYDSLGVNAVEFIINHAEVSLVFVQEKTVSSILSCQKGCSSNLKTIVSFGEVS 186
Query: 186 PEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNE 245
Q+EE + ++++SW+EF +G + +LP K+K DICTIMYTSGTTG+PKGV+++N
Sbjct: 187 STQKEEAKNQCVSLFSWNEFSLMGNLDEANLPRKRKTDICTIMYTSGTTGEPKGVILNNA 246
Query: 246 NIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKL 305
I + + +LE + + DV+ SYLPLAH +D+ +E F+S G+++G+WRGD++
Sbjct: 247 AISVQVLSIDKMLEVTDRSCDTSDVFFSYLPLAHCYDQVMEIYFLSRGSSVGYWRGDIRY 306
Query: 306 LLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHV 365
L++D+ LKPT+FC VPRV D++Y+G+ QKIS+ GL++K LF+ AY+YK N++KG
Sbjct: 307 LMDDVQALKPTVFCGVPRVYDKLYAGIMQKISASGLIRKKLFDFAYNYKLGNMRKGFSQE 366
Query: 366 EASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAG 425
EASP D+++FDK+K++ GGR ++LSGAAPL HVE FLR++ +++ QGYGLTE+C G
Sbjct: 367 EASPRLDRLMFDKIKEALGGRAHMLLSGAAPLPRHVEEFLRIIPASNLSQGYGLTESCGG 426
Query: 426 TFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSS-TPRGEVCVKGSTVFSGYYKR 484
+F +L SM+GTVG P+P V+ L SVPEM YDA S+ PRGE+C++G+++FSGY+KR
Sbjct: 427 SFTTLAGVFSMVGTVGVPMPTVEARLVSVPEMGYDAFSADVPRGEICLRGNSMFSGYHKR 486
Query: 485 EDLTKEVMVDGWFHTG-MGVWEQ 506
+DLT +V++DGWFHTG +G W++
Sbjct: 487 QDLTDQVLIDGWFHTGDIGEWQE 509
|
|
| TAIR|locus:2065195 LACS1 "AT2G47240" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1312 (466.9 bits), Expect = 6.9e-134, P = 6.9e-134
Identities = 241/499 (48%), Positives = 339/499 (67%)
Query: 4 MK-YVVEVEKAKEASGGRPSIGPVYRSLFAKDGFPAPIPG-MESCWDVFRMAVERNPNNR 61
MK + +VE+ + G+PS+GPVYR+L ++ GFP PI + + WD+F +VE+ P+N
Sbjct: 1 MKSFAAKVEEGVKGIDGKPSVGPVYRNLLSEKGFP-PIDSEITTAWDIFSKSVEKFPDNN 59
Query: 62 MLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGME 121
MLG R IVD K G Y+WKTYKEVY+ V+++ +A+R G E + GIYGVNCP+WII ME
Sbjct: 60 MLGWRRIVDEKVGPYMWKTYKEVYEEVLQIGSALRAAGAEPGSRVGIYGVNCPQWIIAME 119
Query: 122 ACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSF 181
AC A L CVPLYDTLG+GAV++I+ H+ + FV++ KI +L+ K + LK IVSF
Sbjct: 120 ACAAHTLICVPLYDTLGSGAVDYIVEHAEIDFVFVQDTKIKGLLEPDCKCAKRLKAIVSF 179
Query: 182 SKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVM 241
+ V E + + G+ YSW +FL +G K D K +ICTIMYTSGT+GDPKGV+
Sbjct: 180 TNVSDELSHKASEIGVKTYSWIDFLHMGREKPEDTNPPKAFNICTIMYTSGTSGDPKGVV 239
Query: 242 VSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRG 301
++++ + TF+ G+ ++ +K+T +DVY+S+LPLAHI DR EE F GA++G++ G
Sbjct: 240 LTHQAVATFVVGMDLYMDQFEDKMTHDDVYLSFLPLAHILDRMNEEYFFRKGASVGYYHG 299
Query: 302 DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKG 361
++ +L +DI ELKPT VPRV +RI+ G+ + + ++ +FN Y +K L +G
Sbjct: 300 NLNVLRDDIQELKPTYLAGVPRVFERIHEGIQKALQELNPRRRFIFNALYKHKLAWLNRG 359
Query: 362 HKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTE 421
+ H +ASP+AD I F K++ GGR+RL++SG APL+P +E FLRV C V+QGYGLTE
Sbjct: 360 YSHSKASPMADFIAFRKIRDKLGGRIRLLVSGGAPLSPEIEEFLRVTCCCFVVQGYGLTE 419
Query: 422 TCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGY 481
T GT + P+EM M+GTVG P ++ LE V EM YD L P GE+C++G +FSGY
Sbjct: 420 TLGGTALGFPDEMCMLGTVGIPAVYNEIRLEEVSEMGYDPLGENPAGEICIRGQCMFSGY 479
Query: 482 YKREDLTKEVMVDGWFHTG 500
YK +LT+EVM DGWFHTG
Sbjct: 480 YKNPELTEEVMKDGWFHTG 498
|
|
| TAIR|locus:2143661 LACS7 "AT5G27600" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 832 (297.9 bits), Expect = 5.0e-83, P = 5.0e-83
Identities = 183/468 (39%), Positives = 266/468 (56%)
Query: 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGV 100
P + + D F AVE N+ LG R DG G+Y W TY E + + + GV
Sbjct: 81 PEIGTLHDNFVHAVETYAENKYLGTRVRSDGTIGEYSWMTYGEAASERQAIGSGLLFHGV 140
Query: 101 EERGKC-GIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEK 159
+ G C G+Y +N PEW++ AC A VPLYDTLG AV+F++ H+ + F +
Sbjct: 141 NQ-GDCVGLYFINRPEWLVVDHACAAYSFVSVPLYDTLGPDAVKFVVNHANLQAIFCVPQ 199
Query: 160 KIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVK 219
+ +L +F ++ IV G+ + S+ + L G +
Sbjct: 200 TL-NILLSFLAEIPSIRLIVVVGGADEHLPSLPRGTGVTIVSYQKLLSQGRSSLHPFSPP 258
Query: 220 KKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAH 279
K DI TI YTSGTTG PKGV++++ N++ +AG SV + DVY+SYLPLAH
Sbjct: 259 KPEDIATICYTSGTTGTPKGVVLTHGNLIANVAG-----SSVEAEFFPSDVYISYLPLAH 313
Query: 280 IFDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSG 339
I++RA + + + G A+GF++GDV L++D L+PTIFC+VPR+ +RIY G+ + S
Sbjct: 314 IYERANQIMGVYGGVAVGFYQGDVFKLMDDFAVLRPTIFCSVPRLYNRIYDGITSAVKSS 373
Query: 340 GLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTP 399
G++KK LF IAY+ K + G S DK+VF+K+K+ GGRVR + SGA+PL+P
Sbjct: 374 GVVKKRLFEIAYNSKKQAIINGRT---PSAFWDKLVFNKIKEKLGGRVRFMGSGASPLSP 430
Query: 400 HVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEY 459
V FLR+ V +GYG+TET ++ + ++ G VG P P +V L VPEM Y
Sbjct: 431 DVMDFLRICFGCSVREGYGMTETSC-VISAMDDGDNLSGHVGSPNPACEVKLVDVPEMNY 489
Query: 460 DALSST-PRGEVCVKGSTVFSGYYKREDLTKEVMV-DGWFHTG-MGVW 504
+ PRGE+CV+G +F GYYK E+ T+E++ DGW HTG +G+W
Sbjct: 490 TSDDQPYPRGEICVRGPIIFKGYYKDEEQTREILDGDGWLHTGDIGLW 537
|
|
| TAIR|locus:2083013 LACS6 "AT3G05970" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 821 (294.1 bits), Expect = 7.4e-82, P = 7.4e-82
Identities = 186/468 (39%), Positives = 265/468 (56%)
Query: 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGV 100
P + + D F AV + + LG R VDG G Y W TY E + + + G+
Sbjct: 81 PDIATLHDNFEHAVHDFRDYKYLGTRVRVDGTVGDYKWMTYGEAGTARTALGSGLVHHGI 140
Query: 101 EERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKK 160
GIY +N PEW+I AC++ VPLYDTLG AV+FI+ H+ V F +
Sbjct: 141 PMGSSVGIYFINRPEWLIVDHACSSYSYVSVPLYDTLGPDAVKFIVNHATVQAIFCVAET 200
Query: 161 IPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGE-NKQFDLPVK 219
+ +L + ++ +V + G+ V S+ L G N Q P
Sbjct: 201 LNSLLSCLSEMPS-VRLVVVVGGLIESLPSLPSSSGVKVVSYSVLLNQGRSNPQRFFP-P 258
Query: 220 KKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAH 279
K +D+ TI YTSGTTG PKGV++++ N++ +AG S + K S DVY+SYLPLAH
Sbjct: 259 KPDDVATICYTSGTTGTPKGVVLTHANLIANVAG-----SSFSVKFFSSDVYISYLPLAH 313
Query: 280 IFDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSG 339
I++RA + + + G A+GF++GD LL+D+ L+PT+F +VPR+ +RIY+G+ + +
Sbjct: 314 IYERANQILTVYFGVAVGFYQGDNMKLLDDLAALRPTVFSSVPRLYNRIYAGIINAVKTS 373
Query: 340 GLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTP 399
G LK+ LFN AY+ K L G ASPI D++VF+K+K GGRVR + SGA+PL+P
Sbjct: 374 GGLKERLFNAAYNAKKQALLNGKS---ASPIWDRLVFNKIKDRLGGRVRFMTSGASPLSP 430
Query: 400 HVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEY 459
V FL+V V +GYG+TET + ++ G VG P P +V L VPEM Y
Sbjct: 431 EVMEFLKVCFGGRVTEGYGMTETSC-VISGMDEGDNLTGHVGSPNPACEVKLVDVPEMNY 489
Query: 460 DALSST-PRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTG-MGVW 504
+ PRGE+CV+G +F+GYYK E TKEV+ DGW HTG +G+W
Sbjct: 490 TSADQPHPRGEICVRGPIIFTGYYKDEIQTKEVIDEDGWLHTGDIGLW 537
|
|
| DICTYBASE|DDB_G0269242 fcsA "long-chain-fatty-acid-CoA ligase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 817 (292.7 bits), Expect = 2.0e-81, P = 2.0e-81
Identities = 182/466 (39%), Positives = 271/466 (58%)
Query: 47 WDVFRMAVERNPNNRMLGQREIV-DGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGK 105
+DV+R + ++ ++ LG RE++ DGK G Y W +YK+ + +A+ G+ + +
Sbjct: 57 YDVYR--INKDSDSNFLGIRELLADGKRGDYKWISYKQACIRANNIGSALVQLGLNKGDR 114
Query: 106 CGIYGVNCPEWIIG-MEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEM 164
GI+ +N PEW++ M A N L V LY TLGA A+E+++ HS +S+ E K + ++
Sbjct: 115 IGIFSINRPEWVLSDMAAMNH-SLVPVALYATLGANAIEYVVNHSEISVLLCEGKNVEKI 173
Query: 165 LKTFPKTTEHLKTIVSFSKVKPEQREEI-EKYGLAVYSWDEFLQLGENKQFDLPVKKKND 223
L + P TT +KTIVS+ + ++ + + +Y +F +LGE V D
Sbjct: 174 L-SMPGTT--IKTIVSYDPLPQATLDKFKDNENVKLYLLSDFEKLGEQNPAQHEVPSPED 230
Query: 224 ICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDR 283
+CT++YTSG+TG+PKGVM+++ N+V+ +AG V EDV++SYLPLAH F+R
Sbjct: 231 LCTLLYTSGSTGNPKGVMLTHTNMVSEVAGANFSPAGV----IPEDVHMSYLPLAHSFER 286
Query: 284 AIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLK 343
A+ + G IGF+ G + L DI L+PT C PRV R++ L +++ LK
Sbjct: 287 AVVSLMCYVGGQIGFFSGLIPELFNDIQVLRPTFLCGAPRVWQRLHDKLWFTVNNDSWLK 346
Query: 344 KTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVET 403
K LFN + K L+ G +PI DK+VF K K GGRV+ ILSG+APL P +
Sbjct: 347 KFLFNWGLNSKQSALRLG----STTPIWDKLVFSKTKDRLGGRVKFILSGSAPLDPKLAE 402
Query: 404 FLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALS 463
FLR C V+ GYGL+E G V+ P + + +G VGPP+ ++ L VPEM Y +
Sbjct: 403 FLRACFCCPVVSGYGLSENVGGASVAYPEDNN-VGHVGPPLSACEMKLIDVPEMNYFSTD 461
Query: 464 ST-PRGEVCVKGSTVFSGYYKREDLTKE-VMVDGWFHTG-MGVWEQ 506
PRGEVC++G VF GY+K + TKE + DGWFHTG +G W +
Sbjct: 462 KPCPRGEVCIRGFNVFKGYFKDPEKTKEDLKEDGWFHTGDIGRWNE 507
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| DICTYBASE|DDB_G0269474 fcsB "fatty acyl-CoA synthetase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 767 (275.1 bits), Expect = 3.9e-76, P = 3.9e-76
Identities = 162/465 (34%), Positives = 267/465 (57%)
Query: 47 WDVFRMAVERNPNNRMLGQREI-VDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGK 105
+D + ++ + G+R+ +G GK+ W +Y + + + G++ + K
Sbjct: 66 YDSLVKSCKKYGERKCFGERKKDSNGNLGKFEWISYNTYLERCEYIQQGLCELGLKPKSK 125
Query: 106 CGIYGVNCPEWIIGMEACNALGLHCV-PLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEM 164
GI+ N EW+I + + + + +CV Y+TLG ++ ++ H+ + +AF + + +
Sbjct: 126 VGIFSKNRLEWLI-VHSASFIQSYCVVSFYETLGVESLSYVTEHAEIGLAFCSAETLQKT 184
Query: 165 LKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGE--NKQFDLPVKKKN 222
L K + LKTI+ F + E ++ G+ +Y++DE ++ G+ N + +
Sbjct: 185 LD-IAKGVKVLKTIICFDSIDKEHYNIAKELGVTLYTYDEIMKKGKEANGKHKHTPPTPD 243
Query: 223 DICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282
+ TIMYTSGTTG PKGVM++++N+ + + V + K+ DV+ SYLP AH+ +
Sbjct: 244 TLSTIMYTSGTTGPPKGVMITHKNLTSVVCAVSDFI-----KVYDTDVHYSYLPYAHVLE 298
Query: 283 RAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLL 342
R + GAAIG + GD+ +L ++ L PT+F VPRV +RI + + ++IS L
Sbjct: 299 RVVILAAFHFGAAIGIFSGDISNILVEVKLLSPTLFIGVPRVFERIKTNVFKEISKKPAL 358
Query: 343 KKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVE 402
+TLFN AY+ K+ +++ G K + D + F K+KQ+ GG+VR+ILSG+APL+ E
Sbjct: 359 LRTLFNGAYNLKYLSIQHGFKLPIIEKVLDLVFFSKIKQALGGKVRVILSGSAPLSFDTE 418
Query: 403 TFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDAL 462
FLRVV C VLQGYG +E C G ++ S +GT+GPP + ++ L VPE+ YD+
Sbjct: 419 VFLRVVMCCCVLQGYGASEGCGGDACKRLDDES-VGTIGPPFASNEIKLVDVPELGYDSN 477
Query: 463 SSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG-MGVWEQ 506
GEVC++G ++ SGYYK E+ T+E DGWFHTG +G W +
Sbjct: 478 GEVQTGEVCLRGPSISSGYYKDEEKTREEFKDGWFHTGDIGRWNR 522
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| UNIPROTKB|E2R463 ACSL5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 760 (272.6 bits), Expect = 2.1e-75, P = 2.1e-75
Identities = 178/471 (37%), Positives = 274/471 (58%)
Query: 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEE 102
+++ +DVF+ + + N LG R+ Y W +Y++V D + + + G E
Sbjct: 91 VKTMYDVFQRGLAVSDNGPCLGYRK----PNQPYKWLSYRQVSDRAEYLGSCLLHKGYEP 146
Query: 103 RG--KCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEE-K 159
GI+ N PEWII AC + VPLYDTLGA A+ +I+ + ++ + +
Sbjct: 147 SSDQSVGIFAQNRPEWIISELACYTYSMVAVPLYDTLGAEAIIYIVNKADIAAVICDTPQ 206
Query: 160 KIPEMLKTFPK-TTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPV 218
K +++ K T LK I+ + + +E EK G+ + S + LG+ + F PV
Sbjct: 207 KASTLIENMEKGLTPGLKMIILMDPFEDDLKERAEKCGIEILSLFDAEILGK-ENFRKPV 265
Query: 219 KKK-NDICTIMYTSGTTGDPKGVMVSNENIVTFIAG-VKCLLESVNEKLTSEDVYVSYLP 276
+ D+ I +TSGTTGDPKG M++++NI++ ++ +KC+ K T EDV +SYLP
Sbjct: 266 PPRPEDLSIICFTSGTTGDPKGAMLTHQNIISNVSSFLKCM--EYTFKPTPEDVTISYLP 323
Query: 277 LAHIFDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKI 336
LAH+F+R ++ V S GA +GF++GD++LL ED+ LKPT+F +VPR+L+RIY + +
Sbjct: 324 LAHMFERIVQAVIYSCGARVGFFQGDIRLLPEDLKTLKPTLFPSVPRLLNRIYDKVQNEA 383
Query: 337 SSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAP 396
+ LKK L N+A S KF+ +KKG + I DK++F K++ + GGR+ +++GAAP
Sbjct: 384 KTP--LKKFLLNLAISCKFNEVKKGI--IRRDSIWDKLIFAKIQATLGGRINFVVTGAAP 439
Query: 397 LTPHVETFLRVVACAHVLQGYGLTETCAG-TFVSLPNEMSMIGTVGPPVPNVDVCLESVP 455
++ V FLR V + YG TE AG TF S P + + G VG P+ V LE VP
Sbjct: 440 ISSPVLMFLRAALGCPVFEAYGQTECTAGCTFTS-PGDWTS-GHVGVPLACNHVKLEDVP 497
Query: 456 EMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTG-MGVW 504
+M Y ++++ GE+C+KGS VF GY K + TKE + DGW HTG +G W
Sbjct: 498 DMNYFSVNN--EGEICIKGSNVFKGYLKDPEKTKEALDEDGWLHTGDIGRW 546
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9T0A0 | LACS4_ARATH | 6, ., 2, ., 1, ., 3 | 0.7350 | 0.9881 | 0.7522 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 6.2.1 | 0.963 |
| 3rd Layer | 6.2.1.3 | 0.946 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00006758001 | SubName- Full=Chromosome chr2 scaffold_176, whole genome shotgun sequence; (662 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | GSVIVG00038876001 | SubName- Full=Chromosome chr8 scaffold_99, whole genome shotgun sequence; (448 aa) | • | 0.903 | |||||||
 | GSVIVG00018681001 | SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (691 aa) | • | 0.901 | |||||||
 | GSVIVG00033040001 | SubName- Full=Chromosome chr5 scaffold_64, whole genome shotgun sequence; (428 aa) | • | 0.899 | |||||||
 | GSVIVG00009919001 | SubName- Full=Chromosome undetermined scaffold_1671, whole genome shotgun sequence; Flags- Frag [...] (148 aa) | • | 0.899 | |||||||
 | GSVIVG00009515001 | SubName- Full=Chromosome undetermined scaffold_237, whole genome shotgun sequence; (398 aa) | • | 0.899 | |||||||
 | GSVIVG00025319001 | SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (830 aa) | • | 0.800 | |||||||
 | GSVIVG00019100001 | SubName- Full=Chromosome chr15 scaffold_19, whole genome shotgun sequence; (338 aa) | • | 0.800 | |||||||
 | GSVIVG00009528001 | SubName- Full=Chromosome undetermined scaffold_237, whole genome shotgun sequence; (256 aa) | • | 0.800 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 507 | |||
| PLN02614 | 666 | PLN02614, PLN02614, long-chain acyl-CoA synthetase | 0.0 | |
| PLN02861 | 660 | PLN02861, PLN02861, long-chain-fatty-acid-CoA liga | 0.0 | |
| PLN02430 | 660 | PLN02430, PLN02430, long-chain-fatty-acid-CoA liga | 0.0 | |
| cd05927 | 539 | cd05927, LC-FACS_euk, Eukaryotic long-chain fatty | 0.0 | |
| PLN02736 | 651 | PLN02736, PLN02736, long-chain acyl-CoA synthetase | 1e-136 | |
| COG1022 | 613 | COG1022, FAA1, Long-chain acyl-CoA synthetases (AM | 1e-105 | |
| PLN02387 | 696 | PLN02387, PLN02387, long-chain-fatty-acid-CoA liga | 2e-83 | |
| cd05907 | 456 | cd05907, VL_LC_FACS_like, Long-chain fatty acid Co | 2e-81 | |
| PTZ00216 | 700 | PTZ00216, PTZ00216, acyl-CoA synthetase; Provision | 7e-75 | |
| cd05932 | 504 | cd05932, LC_FACS_bac, Bacterial long-chain fatty a | 2e-71 | |
| pfam00501 | 412 | pfam00501, AMP-binding, AMP-binding enzyme | 3e-69 | |
| cd05933 | 594 | cd05933, ACSBG_like, Bubblegum-like very long-chai | 5e-64 | |
| COG0318 | 534 | COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/ | 2e-54 | |
| PRK06187 | 521 | PRK06187, PRK06187, long-chain-fatty-acid--CoA lig | 3e-49 | |
| cd05936 | 468 | cd05936, FC-FACS_FadD_like, Prokaryotic long-chain | 4e-46 | |
| PTZ00342 | 746 | PTZ00342, PTZ00342, acyl-CoA synthetase; Provision | 2e-42 | |
| PRK07656 | 513 | PRK07656, PRK07656, long-chain-fatty-acid--CoA lig | 2e-36 | |
| cd04433 | 338 | cd04433, AFD_class_I, Adenylate forming domain, Cl | 4e-32 | |
| cd05904 | 504 | cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | 3e-31 | |
| cd05929 | 342 | cd05929, BACL_like, Bacterial Bile acid CoA ligase | 1e-29 | |
| cd05917 | 347 | cd05917, FACL_like_2, Uncharacterized subfamily of | 2e-29 | |
| cd12118 | 520 | cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt | 8e-29 | |
| PRK05605 | 573 | PRK05605, PRK05605, long-chain-fatty-acid--CoA lig | 3e-28 | |
| cd12119 | 517 | cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth | 1e-27 | |
| cd05912 | 407 | cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase | 1e-26 | |
| TIGR01923 | 436 | TIGR01923, menE, O-succinylbenzoate-CoA ligase | 7e-26 | |
| cd05941 | 430 | cd05941, MCS, Malonyl-CoA synthetase (MCS) | 8e-26 | |
| cd05909 | 489 | cd05909, AAS_C, C-terminal domain of the acyl-acyl | 8e-25 | |
| PRK06710 | 563 | PRK06710, PRK06710, long-chain-fatty-acid--CoA lig | 3e-24 | |
| cd05926 | 345 | cd05926, FACL_fum10p_like, Subfamily of fatty acid | 6e-24 | |
| COG0365 | 528 | COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat | 1e-23 | |
| PRK06839 | 496 | PRK06839, PRK06839, acyl-CoA synthetase; Validated | 1e-23 | |
| cd05903 | 437 | cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li | 2e-22 | |
| PRK08751 | 560 | PRK08751, PRK08751, putative long-chain fatty acyl | 9e-22 | |
| PRK08974 | 560 | PRK08974, PRK08974, long-chain-fatty-acid--CoA lig | 9e-22 | |
| TIGR01733 | 409 | TIGR01733, AA-adenyl-dom, amino acid adenylation d | 2e-21 | |
| cd05911 | 487 | cd05911, Firefly_Luc_like, Firefly luciferase of l | 2e-20 | |
| PRK05677 | 562 | PRK05677, PRK05677, long-chain-fatty-acid--CoA lig | 2e-20 | |
| cd05930 | 445 | cd05930, A_NRPS, The adenylation domain of nonribo | 5e-19 | |
| cd05959 | 506 | cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and | 5e-19 | |
| PRK08316 | 523 | PRK08316, PRK08316, acyl-CoA synthetase; Validated | 4e-18 | |
| PRK07059 | 557 | PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig | 1e-17 | |
| cd05921 | 559 | cd05921, FCS, Feruloyl-CoA synthetase (FCS) | 1e-17 | |
| PLN02246 | 537 | PLN02246, PLN02246, 4-coumarate--CoA ligase | 2e-17 | |
| cd05918 | 447 | cd05918, A_NRPS_SidN3_like, The adenylation (A) do | 3e-17 | |
| PLN02574 | 560 | PLN02574, PLN02574, 4-coumarate--CoA ligase-like | 6e-17 | |
| PRK08633 | 1146 | PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola | 1e-16 | |
| cd05945 | 447 | cd05945, DltA, D-alanine:D-alanyl carrier protein | 2e-16 | |
| COG1020 | 642 | COG1020, EntF, Non-ribosomal peptide synthetase mo | 2e-16 | |
| cd05911 | 487 | cd05911, Firefly_Luc_like, Firefly luciferase of l | 2e-15 | |
| PRK12492 | 562 | PRK12492, PRK12492, long-chain-fatty-acid--CoA lig | 2e-15 | |
| cd12117 | 474 | cd12117, A_NRPS_Srf_like, The adenylation domain o | 6e-15 | |
| PRK06145 | 497 | PRK06145, PRK06145, acyl-CoA synthetase; Validated | 8e-15 | |
| PRK03640 | 483 | PRK03640, PRK03640, O-succinylbenzoic acid--CoA li | 1e-14 | |
| cd05944 | 359 | cd05944, FACL_like_4, Uncharacterized subfamily of | 6e-14 | |
| cd05919 | 436 | cd05919, BCL_like, Benzoate CoA ligase (BCL) and s | 6e-14 | |
| PRK08180 | 614 | PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe | 9e-14 | |
| PLN02330 | 546 | PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1 | 2e-13 | |
| TIGR03098 | 517 | TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form | 2e-13 | |
| cd05906 | 560 | cd05906, A_NRPS_TubE_like, The adenylation domain | 4e-13 | |
| cd05914 | 448 | cd05914, FACL_like_3, Uncharacterized subfamily of | 6e-13 | |
| PRK07787 | 471 | PRK07787, PRK07787, acyl-CoA synthetase; Validated | 5e-12 | |
| cd05935 | 430 | cd05935, LC_FACS_like, Putative long-chain fatty a | 6e-12 | |
| PRK08162 | 545 | PRK08162, PRK08162, acyl-CoA synthetase; Validated | 6e-12 | |
| cd05922 | 350 | cd05922, FACL_like_6, Uncharacterized subfamily of | 1e-11 | |
| PRK12583 | 558 | PRK12583, PRK12583, acyl-CoA synthetase; Provision | 2e-11 | |
| cd05920 | 483 | cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l | 2e-11 | |
| TIGR03205 | 541 | TIGR03205, pimA, dicarboxylate--CoA ligase PimA | 4e-11 | |
| PRK07514 | 504 | PRK07514, PRK07514, malonyl-CoA synthase; Validate | 4e-11 | |
| cd05972 | 430 | cd05972, MACS_like, Medium-chain acyl-CoA syntheta | 1e-10 | |
| cd05934 | 421 | cd05934, FACL_DitJ_like, Uncharacterized subfamily | 1e-10 | |
| cd05970 | 537 | cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s | 1e-10 | |
| cd05934 | 421 | cd05934, FACL_DitJ_like, Uncharacterized subfamily | 2e-10 | |
| PRK07529 | 632 | PRK07529, PRK07529, AMP-binding domain protein; Va | 2e-10 | |
| cd05931 | 547 | cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | 3e-10 | |
| PRK07867 | 529 | PRK07867, PRK07867, acyl-CoA synthetase; Validated | 3e-10 | |
| PRK08314 | 546 | PRK08314, PRK08314, long-chain-fatty-acid--CoA lig | 6e-10 | |
| PRK03640 | 483 | PRK03640, PRK03640, O-succinylbenzoic acid--CoA li | 2e-09 | |
| cd05908 | 499 | cd05908, A_NRPS_MycA_like, The adenylation domain | 2e-09 | |
| cd12116 | 438 | cd12116, A_NRPS_Ta1_like, The adenylation domain o | 2e-09 | |
| PRK05852 | 534 | PRK05852, PRK05852, acyl-CoA synthetase; Validated | 2e-09 | |
| PRK08315 | 559 | PRK08315, PRK08315, AMP-binding domain protein; Va | 3e-09 | |
| cd05940 | 444 | cd05940, FATP_FACS, Fatty acid transport proteins | 7e-09 | |
| PRK08315 | 559 | PRK08315, PRK08315, AMP-binding domain protein; Va | 2e-08 | |
| TIGR01734 | 502 | TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho | 4e-08 | |
| PLN02860 | 563 | PLN02860, PLN02860, o-succinylbenzoate-CoA ligase | 4e-08 | |
| PRK08008 | 517 | PRK08008, caiC, putative crotonobetaine/carnitine- | 4e-08 | |
| cd05973 | 440 | cd05973, MACS_like_2, Uncharacterized subfamily of | 4e-08 | |
| PRK06178 | 567 | PRK06178, PRK06178, acyl-CoA synthetase; Validated | 5e-08 | |
| PRK09088 | 488 | PRK09088, PRK09088, acyl-CoA synthetase; Validated | 5e-08 | |
| PRK12582 | 624 | PRK12582, PRK12582, acyl-CoA synthetase; Provision | 6e-08 | |
| PRK12583 | 558 | PRK12583, PRK12583, acyl-CoA synthetase; Provision | 8e-08 | |
| PRK13295 | 547 | PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig | 8e-08 | |
| PRK06188 | 524 | PRK06188, PRK06188, acyl-CoA synthetase; Validated | 8e-08 | |
| PRK07786 | 542 | PRK07786, PRK07786, long-chain-fatty-acid--CoA lig | 1e-07 | |
| PRK07470 | 528 | PRK07470, PRK07470, acyl-CoA synthetase; Validated | 2e-07 | |
| TIGR02262 | 508 | TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil | 2e-07 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 3e-07 | |
| PRK07008 | 539 | PRK07008, PRK07008, long-chain-fatty-acid--CoA lig | 4e-07 | |
| cd12114 | 476 | cd12114, A_NRPS_TlmIV_like, The adenylation domain | 5e-07 | |
| PRK06334 | 539 | PRK06334, PRK06334, long chain fatty acid--[acyl-c | 5e-07 | |
| PRK06188 | 524 | PRK06188, PRK06188, acyl-CoA synthetase; Validated | 6e-07 | |
| PRK06018 | 542 | PRK06018, PRK06018, putative acyl-CoA synthetase; | 6e-07 | |
| cd05908 | 499 | cd05908, A_NRPS_MycA_like, The adenylation domain | 1e-06 | |
| PRK05620 | 576 | PRK05620, PRK05620, long-chain-fatty-acid--CoA lig | 1e-06 | |
| PRK06087 | 547 | PRK06087, PRK06087, short chain acyl-CoA synthetas | 1e-06 | |
| PRK13295 | 547 | PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig | 3e-06 | |
| PRK07786 | 542 | PRK07786, PRK07786, long-chain-fatty-acid--CoA lig | 3e-06 | |
| PRK04813 | 503 | PRK04813, PRK04813, D-alanine--poly(phosphoribitol | 3e-06 | |
| cd05906 | 560 | cd05906, A_NRPS_TubE_like, The adenylation domain | 4e-06 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 4e-06 | |
| PRK09274 | 552 | PRK09274, PRK09274, peptide synthase; Provisional | 4e-06 | |
| PRK08314 | 546 | PRK08314, PRK08314, long-chain-fatty-acid--CoA lig | 8e-06 | |
| TIGR03208 | 538 | TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate | 8e-06 | |
| PRK06814 | 1140 | PRK06814, PRK06814, acylglycerophosphoethanolamine | 8e-06 | |
| TIGR03208 | 538 | TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate | 9e-06 | |
| PRK09029 | 458 | PRK09029, PRK09029, O-succinylbenzoic acid--CoA li | 1e-05 | |
| PLN02479 | 567 | PLN02479, PLN02479, acetate-CoA ligase | 1e-05 | |
| PRK06087 | 547 | PRK06087, PRK06087, short chain acyl-CoA synthetas | 2e-05 | |
| cd05958 | 487 | cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | 2e-05 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 2e-05 | |
| PRK07787 | 471 | PRK07787, PRK07787, acyl-CoA synthetase; Validated | 3e-05 | |
| PRK08008 | 517 | PRK08008, caiC, putative crotonobetaine/carnitine- | 3e-05 | |
| PRK05857 | 540 | PRK05857, PRK05857, acyl-CoA synthetase; Validated | 3e-05 | |
| PRK09192 | 579 | PRK09192, PRK09192, acyl-CoA synthetase; Validated | 4e-05 | |
| PRK06178 | 567 | PRK06178, PRK06178, acyl-CoA synthetase; Validated | 5e-05 | |
| TIGR02188 | 625 | TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase | 6e-05 | |
| PRK08316 | 523 | PRK08316, PRK08316, acyl-CoA synthetase; Validated | 8e-05 | |
| cd05935 | 430 | cd05935, LC_FACS_like, Putative long-chain fatty a | 8e-05 | |
| cd05910 | 455 | cd05910, FACL_like_1, Uncharacterized subfamily of | 8e-05 | |
| PRK13388 | 540 | PRK13388, PRK13388, acyl-CoA synthetase; Provision | 8e-05 | |
| PTZ00297 | 1452 | PTZ00297, PTZ00297, pantothenate kinase; Provision | 9e-05 | |
| PRK07768 | 545 | PRK07768, PRK07768, long-chain-fatty-acid--CoA lig | 1e-04 | |
| cd05971 | 439 | cd05971, MACS_like_3, Uncharacterized subfamily of | 1e-04 | |
| PRK06814 | 1140 | PRK06814, PRK06814, acylglycerophosphoethanolamine | 2e-04 | |
| cd05943 | 616 | cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac | 2e-04 | |
| cd12116 | 438 | cd12116, A_NRPS_Ta1_like, The adenylation domain o | 4e-04 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 6e-04 | |
| PRK06155 | 542 | PRK06155, PRK06155, crotonobetaine/carnitine-CoA l | 7e-04 | |
| PRK07798 | 533 | PRK07798, PRK07798, acyl-CoA synthetase; Validated | 7e-04 | |
| PRK04319 | 570 | PRK04319, PRK04319, acetyl-CoA synthetase; Provisi | 8e-04 | |
| cd12115 | 449 | cd12115, A_NRPS_Sfm_like, The adenylation domain o | 9e-04 | |
| cd05934 | 421 | cd05934, FACL_DitJ_like, Uncharacterized subfamily | 0.001 | |
| PRK09274 | 552 | PRK09274, PRK09274, peptide synthase; Provisional | 0.001 | |
| PRK09192 | 579 | PRK09192, PRK09192, acyl-CoA synthetase; Validated | 0.001 | |
| PRK05850 | 578 | PRK05850, PRK05850, acyl-CoA synthetase; Validated | 0.001 | |
| PRK07514 | 504 | PRK07514, PRK07514, malonyl-CoA synthase; Validate | 0.002 | |
| PRK09088 | 488 | PRK09088, PRK09088, acyl-CoA synthetase; Validated | 0.002 | |
| PLN03102 | 579 | PLN03102, PLN03102, acyl-activating enzyme; Provis | 0.002 | |
| cd05969 | 443 | cd05969, MACS_like_4, Uncharacterized subfamily of | 0.002 | |
| PRK10252 | 1296 | PRK10252, entF, enterobactin synthase subunit F; P | 0.002 | |
| cd05967 | 607 | cd05967, PrpE, Propionyl-CoA synthetase (PrpE) | 0.002 | |
| cd05972 | 430 | cd05972, MACS_like, Medium-chain acyl-CoA syntheta | 0.003 | |
| cd05974 | 433 | cd05974, MACS_like_1, Uncharacterized subfamily of | 0.003 | |
| PRK08279 | 600 | PRK08279, PRK08279, long-chain-acyl-CoA synthetase | 0.003 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 0.004 | |
| cd05937 | 468 | cd05937, FATP_chFAT1_like, Uncharacterized subfami | 0.004 | |
| PRK08043 | 718 | PRK08043, PRK08043, bifunctional acyl-[acyl carrie | 0.004 | |
| PRK08043 | 718 | PRK08043, PRK08043, bifunctional acyl-[acyl carrie | 0.004 | |
| cd05968 | 474 | cd05968, AACS_like, Uncharacterized acyl-CoA synth | 0.004 | |
| cd05915 | 509 | cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetase | 0.004 |
| >gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 854 bits (2207), Expect = 0.0
Identities = 372/505 (73%), Positives = 439/505 (86%), Gaps = 1/505 (0%)
Query: 2 SNMKYVVEVEKAKEASGGRPSIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNR 61
K++ +VE+ KE S GRPS+GPVYRS+FAKDGFP PI GM+SCWDVFRM+VE+ PNN
Sbjct: 3 QQKKFIFQVEEGKEGSDGRPSVGPVYRSIFAKDGFPNPIEGMDSCWDVFRMSVEKYPNNP 62
Query: 62 MLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGME 121
MLG+REIVDGK GKYVW+TY+EVYD+VIK+ N++R+ GV++ KCGIYG N PEWII ME
Sbjct: 63 MLGRREIVDGKPGKYVWQTYQEVYDIVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISME 122
Query: 122 ACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSF 181
ACNA GL+CVPLYDTLGAGAVEFII HS VSI FVEEKKI E+ KT P +TE++KT+VSF
Sbjct: 123 ACNAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVSF 182
Query: 182 SKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVM 241
V EQ+EE E +GL +Y+WDEFL+LGE KQ+DLP+KKK+DICTIMYTSGTTGDPKGVM
Sbjct: 183 GGVSREQKEEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVM 242
Query: 242 VSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRG 301
+SNE+IVT IAGV LL+S N LT +DVY+SYLPLAHIFDR IEE FI +GAAIGFWRG
Sbjct: 243 ISNESIVTLIAGVIRLLKSANAALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRG 302
Query: 302 DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKG 361
DVKLL+ED+GELKPTIFCAVPRVLDR+YSGL +K+S GG LKK +F+ A+SYKF N+KKG
Sbjct: 303 DVKLLIEDLGELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFVFDSAFSYKFGNMKKG 362
Query: 362 HKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTE 421
HVEASP+ DK+VF+KVKQ GG VR+ILSGAAPL HVE+FLRVVAC HVLQGYGLTE
Sbjct: 363 QSHVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHVESFLRVVACCHVLQGYGLTE 422
Query: 422 TCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGY 481
+CAGTFVSLP+E+ M+GTVGPPVPNVD+ LESVPEMEYDAL+STPRGE+C++G T+FSGY
Sbjct: 423 SCAGTFVSLPDELDMLGTVGPPVPNVDIRLESVPEMEYDALASTPRGEICIRGKTLFSGY 482
Query: 482 YKREDLTKEVMVDGWFHTG-MGVWE 505
YKREDLTKEV++DGW HTG +G W+
Sbjct: 483 YKREDLTKEVLIDGWLHTGDVGEWQ 507
|
Length = 666 |
| >gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Score = 720 bits (1861), Expect = 0.0
Identities = 292/503 (58%), Positives = 380/503 (75%), Gaps = 2/503 (0%)
Query: 4 MKYVVEVEKAKEASGGRPSIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNRML 63
Y V+VE+++ A+GG+PS GPVYRS++AKDG ++S W F AV++ PNN+ML
Sbjct: 3 ETYTVKVEESRPATGGKPSAGPVYRSIYAKDGLLDLPADIDSPWQFFSDAVKKYPNNQML 62
Query: 64 GQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEAC 123
G+R++ D K G YVW TYKEVYD I++ +AIR+ GV +CGIYG NCPEWII MEAC
Sbjct: 63 GRRQVTDSKVGPYVWLTYKEVYDAAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEAC 122
Query: 124 NALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSK 183
N+ G+ VPLYDTLGA AVEFII H+ VSIAFV+E KI +L PK + +LKTIVSF
Sbjct: 123 NSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKISSILSCLPKCSSNLKTIVSFGD 182
Query: 184 VKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVS 243
V EQ+EE E+ G++ +SW+EF +G + +LP K+K DICTIMYTSGTTG+PKGV+++
Sbjct: 183 VSSEQKEEAEELGVSCFSWEEFSLMG-SLDCELPPKQKTDICTIMYTSGTTGEPKGVILT 241
Query: 244 NENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDV 303
N I+ + LL+ + T ED Y SYLPLAH++D+ IE IS GA+IGFW+GD+
Sbjct: 242 NRAIIAEVLSTDHLLKVTDRVATEEDSYFSYLPLAHVYDQVIETYCISKGASIGFWQGDI 301
Query: 304 KLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHK 363
+ L+ED+ LKPTIFC VPRV DRIY+G+ QKISSGG+L+K LF+ AY+YK NL+KG K
Sbjct: 302 RYLMEDVQALKPTIFCGVPRVYDRIYTGIMQKISSGGMLRKKLFDFAYNYKLGNLRKGLK 361
Query: 364 HVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETC 423
EASP D++VFDK+K+ GGRVRL+LSGAAPL HVE FLRV +C+ + QGYGLTE+C
Sbjct: 362 QEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVEEFLRVTSCSVLSQGYGLTESC 421
Query: 424 AGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYK 483
G F S+ N SM+GTVG P+ ++ LESVPEM YDALS PRGE+C++G+T+FSGY+K
Sbjct: 422 GGCFTSIANVFSMVGTVGVPMTTIEARLESVPEMGYDALSDVPRGEICLRGNTLFSGYHK 481
Query: 484 REDLTKEVMVDGWFHTG-MGVWE 505
R+DLT+EV++DGWFHTG +G W+
Sbjct: 482 RQDLTEEVLIDGWFHTGDIGEWQ 504
|
Length = 660 |
| >gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Score = 622 bits (1607), Expect = 0.0
Identities = 247/498 (49%), Positives = 345/498 (69%), Gaps = 1/498 (0%)
Query: 4 MK-YVVEVEKAKEASGGRPSIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNRM 62
MK + +VE+ + G+PS+GPVYR+L +K GFP + + WD+F +VE+ P+N+M
Sbjct: 1 MKSFAAQVEEGVKGKDGKPSVGPVYRNLLSKKGFPPIDSDITTAWDIFSKSVEKYPDNKM 60
Query: 63 LGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122
LG R IVDGK G Y+WKTYKEVY+ V+++ +A+R G E + GIYG NCP+WI+ MEA
Sbjct: 61 LGWRRIVDGKVGPYMWKTYKEVYEEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAMEA 120
Query: 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFS 182
C A L CVPLYDTLG GAV++I+ H+ + FV++KKI E+L+ K+ + LK IVSF+
Sbjct: 121 CAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKIKELLEPDCKSAKRLKAIVSFT 180
Query: 183 KVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMV 242
V E+ ++ + G+ YSW +FL +G+ + K DICTIMYTSGT+GDPKGV++
Sbjct: 181 SVTEEESDKASQIGVKTYSWIDFLHMGKENPSETNPPKPLDICTIMYTSGTSGDPKGVVL 240
Query: 243 SNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGD 302
++E + TF+ GV +E +K+T +DVY+S+LPLAHI DR IEE F GA++G++ GD
Sbjct: 241 THEAVATFVRGVDLFMEQFEDKMTHDDVYLSFLPLAHILDRMIEEYFFRKGASVGYYHGD 300
Query: 303 VKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGH 362
+ L +D+ ELKPT+ VPRV +RI+ G+ + + ++ +FN Y YK + +G+
Sbjct: 301 LNALRDDLMELKPTLLAGVPRVFERIHEGIQKALQELNPRRRLIFNALYKYKLAWMNRGY 360
Query: 363 KHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTET 422
H +ASP+AD + F KVK GGR+RL++SG APL+ +E FLRV +CA V+QGYGLTET
Sbjct: 361 SHKKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIEEFLRVTSCAFVVQGYGLTET 420
Query: 423 CAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYY 482
T + P+EM M+GTVG P ++ LE VPEM YD L PRGE+CV+G +FSGYY
Sbjct: 421 LGPTTLGFPDEMCMLGTVGAPAVYNELRLEEVPEMGYDPLGEPPRGEICVRGKCLFSGYY 480
Query: 483 KREDLTKEVMVDGWFHTG 500
K +LT+EVM DGWFHTG
Sbjct: 481 KNPELTEEVMKDGWFHTG 498
|
Length = 660 |
| >gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS) | Back alignment and domain information |
|---|
Score = 541 bits (1396), Expect = 0.0
Identities = 195/428 (45%), Positives = 259/428 (60%), Gaps = 45/428 (10%)
Query: 74 GKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPL 133
G Y W +YKEV + + + + +R G++ K GI+ N PEWII +AC + L VPL
Sbjct: 1 GPYEWISYKEVEERALNIGSGLRALGLKPGDKIGIFAENRPEWIITEQACFSQSLVIVPL 60
Query: 134 YDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIE 193
YDTLG A+E+I+ + +SI F + K
Sbjct: 61 YDTLGEEAIEYILNETEISIVFCDAVK--------------------------------- 87
Query: 194 KYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAG 253
VYS++E +LG+ + K D+ TIMYTSGTTG+PKGVM+++ NIV +AG
Sbjct: 88 -----VYSFEELEELGKKNKVPPTPPKPEDLATIMYTSGTTGNPKGVMLTHGNIVAGVAG 142
Query: 254 VKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKLLLEDIGEL 313
+ + V E + DVY+SYLPLAHIF+R +E V + G IG++ GD + L DI EL
Sbjct: 143 I---NKIVPEFIGPTDVYISYLPLAHIFERVVENVCLYIGGRIGYYSGDTRGLKGDIKEL 199
Query: 314 KPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADK 373
KPT+F VPRVLDRIY G+ K+++ G LK+TLFN AY+YK L++G H ASP+ DK
Sbjct: 200 KPTVFVGVPRVLDRIYKGILAKVNAKGGLKRTLFNFAYNYKLAALRRG--HGYASPLWDK 257
Query: 374 IVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNE 433
+VF K+K + GGRVRL+LSG APL+P + FLRV VLQGYGLTETCAG +S P +
Sbjct: 258 LVFKKIKAALGGRVRLMLSGGAPLSPDTQEFLRVALGCPVLQGYGLTETCAGGTLSDPGD 317
Query: 434 MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM- 492
+ G VGPP+P ++ L VPEM Y A PRGE+C++G VF GYYK + T E
Sbjct: 318 TT-TGHVGPPLPCCEIKLVDVPEMGYFAKDDPPRGEICIRGPNVFKGYYKNPEKTAEAFD 376
Query: 493 VDGWFHTG 500
DGWFHTG
Sbjct: 377 EDGWFHTG 384
|
The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539 |
| >gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 407 bits (1048), Expect = e-136
Identities = 187/486 (38%), Positives = 271/486 (55%), Gaps = 18/486 (3%)
Query: 26 VYRS----LFAKDGFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTY 81
VYRS L FP P + + D F AVE + + LG R VDG G+Y W TY
Sbjct: 23 VYRSARSPLKLVSRFP-DHPEIGTLHDNFVYAVETFRDYKYLGTRIRVDGTVGEYKWMTY 81
Query: 82 KEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGA 141
E + + + G+ + G+Y +N PEW+I AC+A VPLYDTLG A
Sbjct: 82 GEAGTARTAIGSGLVQHGIPKGACVGLYFINRPEWLIVDHACSAYSYVSVPLYDTLGPDA 141
Query: 142 VEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYS 201
V+FI+ H+ V+ F + + +L + ++ IV G+ + +
Sbjct: 142 VKFIVNHAEVAAIFCVPQTLNTLL-SCLSEIPSVRLIVVVGGADEPLPSLPSGTGVEIVT 200
Query: 202 WDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESV 261
+ + L G + K D+ TI YTSGTTG PKGV++++ N++ +AG S+
Sbjct: 201 YSKLLAQGRSSPQPFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVAGS-----SL 255
Query: 262 NEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAV 321
+ K DV++SYLPLAHI++R + V + G A+GF++GD L++D+ L+PTIFC+V
Sbjct: 256 STKFYPSDVHISYLPLAHIYERVNQIVMLHYGVAVGFYQGDNLKLMDDLAALRPTIFCSV 315
Query: 322 PRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQ 381
PR+ +RIY G+ + G LK+ LFN AY+ K L+ G SP+ D++VF+K+K
Sbjct: 316 PRLYNRIYDGITNAVKESGGLKERLFNAAYNAKKQALENGKN---PSPMWDRLVFNKIKA 372
Query: 382 SFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVG 441
GGRVR + SGA+PL+P V FLR+ VL+GYG+TET + + ++ G VG
Sbjct: 373 KLGGRVRFMSSGASPLSPDVMEFLRICFGGRVLEGYGMTET-SCVISGMDEGDNLSGHVG 431
Query: 442 PPVPNVDVCLESVPEMEY-DALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHT 499
P P +V L VPEM Y PRGE+CV+G +F GYYK E T+EV+ DGW HT
Sbjct: 432 SPNPACEVKLVDVPEMNYTSEDQPYPRGEICVRGPIIFKGYYKDEVQTREVIDEDGWLHT 491
Query: 500 G-MGVW 504
G +G+W
Sbjct: 492 GDIGLW 497
|
Length = 651 |
| >gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 325 bits (836), Expect = e-105
Identities = 145/477 (30%), Positives = 233/477 (48%), Gaps = 41/477 (8%)
Query: 42 GMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWK--------TYKEVYDLVIKVVN 93
E + E + + L +R ++K TY+E+Y+ V + +
Sbjct: 1 LGERISMAWEDVAEIHTLPKRLAERVKDRPDGVALMYKELGGWEAITYRELYERVRALAS 60
Query: 94 AIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSI 153
+ + G+ + I+ N PEW I A ALG VP+Y T + +I+ S +
Sbjct: 61 GLLSLGIPAGDRVAIFAANRPEWAIADLAILALGAVSVPIYSTSTPEQLAYILNESESKV 120
Query: 154 AFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQRE--EIEKYGLAVYSW---DEFLQL 208
FVE +++ +++ E +V + RE E + L V+ FL
Sbjct: 121 IFVENQELLDLVLPVL---EDCPKVVDLIVIIDLVREAVEAKALVLEVFPDEGISLFLID 177
Query: 209 GENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSE 268
+ + K +D+ TI+YTSGTTG PKGVM+++ N++ +AG+ V +
Sbjct: 178 SAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGID----EVLPPIGPG 233
Query: 269 DVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRI 328
D +S+LPLAHIF+RA E G ++ D + LLED+ E++PT+ VPRV +++
Sbjct: 234 DRVLSFLPLAHIFERAFEGGLALYGGVTVLFKEDPRTLLEDLKEVRPTVMIGVPRVWEKV 293
Query: 329 YSGLNQKISSGGLLKKTLFNIAYS----YKFHNLKKGHKHVEASPIADKIVFDKVKQSFG 384
Y G+ +K++ +++ LF A L G + +AD++VF K++ + G
Sbjct: 294 YKGIMEKVAKAPAVRRKLFRWALKVAYKKISRALLGG-GPLSWLLVADRLVFRKIRDALG 352
Query: 385 GRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPV 444
GR+R LSG APL+P + F R + +L+GYGLTET A V+ P+ ++GTVG P+
Sbjct: 353 GRIRYALSGGAPLSPELLHFFRSLGI-PILEGYGLTETSAVVSVNPPDRF-VLGTVGKPL 410
Query: 445 PNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV-DGWFHTG 500
P ++V + GE+ V+G V GYYK + T E DGWF TG
Sbjct: 411 PGIEVKIAD-------------DGEILVRGPNVMKGYYKNPEATAEAFTEDGWFRTG 454
|
Length = 613 |
| >gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein | Back alignment and domain information |
|---|
Score = 271 bits (696), Expect = 2e-83
Identities = 171/520 (32%), Positives = 257/520 (49%), Gaps = 80/520 (15%)
Query: 36 FPAPIPGMESCWD-------VFRMAVERNPNNRMLGQREIV--------DGKA------G 74
FP + E+ W+ +F + ++ + R+LG R+++ DG+ G
Sbjct: 46 FPELV---ETPWEGATTLAALFEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLG 102
Query: 75 KYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLY 134
+Y W TY +V++ V + + G + + I+ EW+I ++ C + V +Y
Sbjct: 103 EYEWITYGQVFERVCNFASGLVALGHNKEERVAIFADTRAEWLIALQGCFRQNITVVTIY 162
Query: 135 DTLGAGAVEFIICHS----GVSIAFVEEKKIPEMLKTFPKTTEHLKTI---VSFSKVKPE 187
+LG A +CHS V+ + K+ LK + L+T+ + +
Sbjct: 163 ASLGEEA----LCHSLNETEVTTVICDSKQ----LKKLIDISSQLETVKRVIYMDDEGVD 214
Query: 188 QREEIEKYG-LAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNEN 246
+ V S+ E +LG+ D + NDI IMYTSG+TG PKGVM+++ N
Sbjct: 215 SDSSLSGSSNWTVSSFSEVEKLGKENPVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGN 274
Query: 247 IVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKLL 306
IV +AGV +V KL DVY++YLPLAHI + A E V + GAAIG+ G L
Sbjct: 275 IVATVAGVM----TVVPKLGKNDVYLAYLPLAHILELAAESVMAAVGAAIGY--GSPLTL 328
Query: 307 LE-----------DIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKF 355
+ D LKPT+ AVP +LDR+ G+ +K+ + G L K LF+IAY
Sbjct: 329 TDTSNKIKKGTKGDASALKPTLMTAVPAILDRVRDGVRKKVDAKGGLAKKLFDIAY---- 384
Query: 356 HNLKKGHKHVEAS---------PIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLR 406
K+ +E S + D +VF K++ GGR+R +LSG APL+ + F+
Sbjct: 385 ---KRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLGGRIRFMLSGGAPLSGDTQRFIN 441
Query: 407 VVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSS-T 465
+ A + QGYGLTETCAG S ++ S +G VGPP+P V L S E Y
Sbjct: 442 ICLGAPIGQGYGLTETCAGATFSEWDDTS-VGRVGPPLPCCYVKLVSWEEGGYLISDKPM 500
Query: 466 PRGEVCVKGSTVFSGYYKREDLTKEVM-VDG----WFHTG 500
PRGE+ + G +V GY+K ++ T EV VD WF+TG
Sbjct: 501 PRGEIVIGGPSVTLGYFKNQEKTDEVYKVDERGMRWFYTG 540
|
Length = 696 |
| >gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases | Back alignment and domain information |
|---|
Score = 260 bits (667), Expect = 2e-81
Identities = 130/429 (30%), Positives = 193/429 (44%), Gaps = 115/429 (26%)
Query: 74 GKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPL 133
G + T+ E+ + V ++ + GV+ + I N PEW+I A A G VP+
Sbjct: 1 GIWQTITWAELAERVRRLAAGLIALGVKPGDRVAILAENRPEWVIADLAILAAGAVPVPI 60
Query: 134 YDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIE 193
Y T + E + I++ S +
Sbjct: 61 YPTS---------------------------------SPEEVAYILNDSGAR-------- 79
Query: 194 KYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAG 253
+ E+K +D+ T++YTSGTTG+PKGVM+++ N +A
Sbjct: 80 ------------VVFVEDK--------PDDLATLIYTSGTTGNPKGVMLTHRN---LLAQ 116
Query: 254 VKCLLESVNEKLTSEDVYVSYLPLAHIFD-RAIEEVFISNGAAIGFWRGDVKLLLEDIGE 312
LLE + L+ D +S+LPLAH+F+ R E + +S+GA + F + LLED+ E
Sbjct: 117 AAALLEVIP--LSPGDRVLSFLPLAHVFEQRLGEYLPLSSGARVNF-AESPETLLEDLRE 173
Query: 313 LKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIAD 372
++PT+F AVPRV ++IY+G+ K+++ G LK+ LF A
Sbjct: 174 VRPTVFFAVPRVWEKIYAGIEAKVAAAGPLKRKLFRWA---------------------- 211
Query: 373 KIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPN 432
GGR+R +SG APL P V F R + +L+GYGLTET V+ P
Sbjct: 212 ---------LGGGRLRFAVSGGAPLPPEVLEFFRALGI-PILEGYGLTETSGVATVNRP- 260
Query: 433 EMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM 492
IGTVG P+P V+V + GE+ V+G V GYYK + T E +
Sbjct: 261 GDIRIGTVGKPLPGVEVRI-------------AEDGEILVRGPNVMKGYYKNPEATAEAL 307
Query: 493 -VDGWFHTG 500
DGW HTG
Sbjct: 308 DEDGWLHTG 316
|
This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456 |
| >gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 249 bits (638), Expect = 7e-75
Identities = 130/445 (29%), Positives = 216/445 (48%), Gaps = 50/445 (11%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGA 139
TY E+++ ++ + G+ + IY EW+ + + + +Y LG
Sbjct: 123 TYAELWERIVNFGRGLAELGLTKGSNVAIYEETRWEWLASIYGIWSQSMVAATVYANLGE 182
Query: 140 GAVEF---------IICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQRE 190
A+ + I+C+ K +P +L+ TI+ +
Sbjct: 183 DALAYALRETECKAIVCNG---------KNVPNLLRLMKSGGMPNTTIIYLDSLPAS--- 230
Query: 191 EIEKYGLAVYSWDEFLQLGENKQFDLPVK---KKNDICTIMYTSGTTGDPKGVMVSNENI 247
++ G + +W + + G + P+ +D+ IMYTSGTTGDPKGVM ++ ++
Sbjct: 231 -VDTEGCRLVAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTGDPKGVMHTHGSL 289
Query: 248 VTFIAGVKCLLESVNE---KLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVK 304
AG+ L + +N+ ++ Y SYLPLAHI + + +F++ GA IGF G +
Sbjct: 290 T---AGILALEDRLNDLIGPPEEDETYCSYLPLAHIMEFGVTNIFLARGALIGF--GSPR 344
Query: 305 LLLE-------DIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHN 357
L + D+ E +P VPR+ D I + K+ G LK+ +F+ AY +
Sbjct: 345 TLTDTFARPHGDLTEFRPVFLIGVPRIFDTIKKAVEAKLPPVGSLKRRVFDHAYQSRLRA 404
Query: 358 LKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGY 417
LK+G + +P ++ VF + GGRVR +LSG PL+ + F+ VV V+QG+
Sbjct: 405 LKEG----KDTPYWNEKVFSAPRAVLGGRVRAMLSGGGPLSAATQEFVNVVF-GMVIQGW 459
Query: 418 GLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEY-DALSSTPRGEVCVKGST 476
GLTET + ++ VG + V++ L E ++ D PRGE+ ++G
Sbjct: 460 GLTETVCCGGIQRTGDLE-PNAVGQLLKGVEMKLLDTEEYKHTDT--PEPRGEILLRGPF 516
Query: 477 VFSGYYKREDLTKEVMV-DGWFHTG 500
+F GYYK+E+LT+EV+ DGWFHTG
Sbjct: 517 LFKGYYKQEELTREVLDEDGWFHTG 541
|
Length = 700 |
| >gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase | Back alignment and domain information |
|---|
Score = 235 bits (602), Expect = 2e-71
Identities = 129/432 (29%), Positives = 197/432 (45%), Gaps = 60/432 (13%)
Query: 73 AGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVP 132
G++ T+ +V D ++ A+++ G+E + I NC EWII A G VP
Sbjct: 1 GGQWHEYTWAQVADQARRIAAALQSLGLEPGDRIAILSKNCAEWIIADLAIWMAGHVSVP 60
Query: 133 LYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSF-SKVKPEQREE 191
LY TL A + +++ HS FV + + +K E L TI+ F +
Sbjct: 61 LYPTLTAETIRYVLEHSDAKALFVGKLDDWDAMK--AGVPEGLPTIILFPYSTLKDH--- 115
Query: 192 IEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFI 251
Y WD+ L E Q P+ + D+ TI+YTSGTTG PKGVM+S
Sbjct: 116 --------YKWDDLLAATEPLQGR-PLPEPEDLATIVYTSGTTGQPKGVMLSFGAFAFAA 166
Query: 252 AGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRA-IEEVFISNGAAIGFWRGDVKLLLEDI 310
G ++ LT D +SYLPLAHI +R +E + +GA + F + D+
Sbjct: 167 QGTIEII-----GLTPNDRLLSYLPLAHIAERVIVEGGSLYSGAEVFFVES-LDTFAADL 220
Query: 311 GELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPI 370
+PT+F +VPR+ + G+ K+ L L I PI
Sbjct: 221 QRARPTVFFSVPRLWTKFQQGILAKLPPEKLNL--LLKI-------------------PI 259
Query: 371 ADKIVFDKVKQSFG-GRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVS 429
+V K+ + G + RL SGAAP+ P + + R + + +GYG+TE A + ++
Sbjct: 260 LSSLVKKKILKGLGLDQARLAGSGAAPMPPALIAWYRKLGL-PICEGYGMTENFAYSTLN 318
Query: 430 LPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTK 489
P + IGTVG P+P V++ + + GE+ ++ + SGYYK + T
Sbjct: 319 YPGDRR-IGTVGKPIPGVELKI-------------SEDGEILIRSPGLMSGYYKDPEKTA 364
Query: 490 EVMV-DGWFHTG 500
E DGW HTG
Sbjct: 365 EAFTEDGWLHTG 376
|
The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504 |
| >gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme | Back alignment and domain information |
|---|
Score = 226 bits (579), Expect = 3e-69
Identities = 112/441 (25%), Positives = 179/441 (40%), Gaps = 88/441 (19%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGA 139
TY+E+ + ++ A+R GV + I N PEW++ + A G VPL +L A
Sbjct: 1 TYRELDERANRLAAALRALGVGPGDRVAILLPNSPEWVVAILAVLKAGAAYVPLDPSLPA 60
Query: 140 GAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAV 199
+ +I+ S + +++ +P++L+ K L I+ + +
Sbjct: 61 ERLAYILEDSEAKVLITDDELLPKLLEVLLKLLVLLALIIVGDDGEG------------L 108
Query: 200 YSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLE 259
D+ L G + + P +D+ I+YTSGTTG PKGVM+++ N++ AG+
Sbjct: 109 DLLDDELLAGASAEPPAPPVDPDDLAYIIYTSGTTGKPKGVMLTHRNLLALAAGLAERF- 167
Query: 260 SVNEKLTSEDVYVSYLPLAHIFDRAIEEVF--ISNGAAIGF---WRGDVKLLLEDIGELK 314
LT D + LPL ++ E+F + G + + D LL+ I + K
Sbjct: 168 ----GLTPGDRVLLLLPLHFDG--SVWEIFGPLLAGGTLVLVPKFTLDPARLLDLIEKYK 221
Query: 315 PTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKI 374
T+ VP +L + +K Y +L
Sbjct: 222 VTVLYGVPTLLRLLLKAPEEK----------------KYDLSSL---------------- 249
Query: 375 VFDKVKQSFGGRVRLILSGAAPLTPHV-ETFLRVVACAHVLQGYGLTETCAGTFVSLPNE 433
RL+LSG PL P + ++ GYG TET +LP +
Sbjct: 250 -------------RLVLSGGEPLPPELLRRLRERFGGVPLVNGYGPTETTVVATANLPGD 296
Query: 434 MSM-IGTVGPPVPNVDVC-----LESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDL 487
+ G++G P+P V+V E VP E GE+C++G V GY +L
Sbjct: 297 PEVKPGSIGRPLPGVEVKVLDEEGEPVPPGE--------VGELCIRGPGVARGYLNDPEL 348
Query: 488 TKEVMV-DGWF--HTG-MGVW 504
T E V DGW TG +G W
Sbjct: 349 TAERFVEDGWGMYRTGDLGRW 369
|
Length = 412 |
| >gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS) | Back alignment and domain information |
|---|
Score = 218 bits (556), Expect = 5e-64
Identities = 133/442 (30%), Positives = 218/442 (49%), Gaps = 36/442 (8%)
Query: 74 GKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIG-MEACNALGLHCVP 132
+ TYK+ Y+ + A G+E GI G N PEW I + A A G+ V
Sbjct: 4 DGWHTLTYKQYYEACRQAAKAFLKLGLERFHSVGILGFNSPEWFIAAVGAIFAGGI-AVG 62
Query: 133 LYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEI 192
+Y T A +++ S +I V+ K + + HLK I+ + RE +
Sbjct: 63 IYTTNSPEACQYVAETSEANILVVDNAKQLQKILAIQDQLPHLKAIIQY-------REPL 115
Query: 193 EKYGLAVYSWDEFLQLG---ENKQFD--LPVKKKNDICTIMYTSGTTGDPKGVMVSNENI 247
++ +YSW EF++LG ++Q D + +K N CT++YTSGTTG PKGVM+S++NI
Sbjct: 116 KEKEPNLYSWKEFMELGRSIPDEQLDAIIESQKPNQCCTLIYTSGTTGMPKGVMLSHDNI 175
Query: 248 VTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIE-EVFISNGAAIGFWRGDV--K 304
T+ A K ++ ++ + ++ VSYLPL+HI + ++ + IS G + F + D
Sbjct: 176 -TWTA--KAAVKHMDLRTVGQESVVSYLPLSHIAAQILDIWLPISVGGCVYFAQPDALKG 232
Query: 305 LLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKF-HNLKK--G 361
L++ + E++PT F VPRV ++I + + LK+ + + A NLK G
Sbjct: 233 TLVKTLREVRPTAFMGVPRVWEKIQERMKAVGAKSTGLKRKIASWAKGVGLETNLKLMGG 292
Query: 362 HKHVEASP-IADKIVFDKVKQSFG-GRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGL 419
+A K+VF KV+++ G R + +GAAP++ F + +++ YG+
Sbjct: 293 ESPPPMCFRLAKKLVFKKVRKALGLDRCQKFFTGAAPISRETLEFFLSLNIP-IMELYGM 351
Query: 420 TETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFS 479
+ET VS P + + G +P + + DA GE+C+ G VF
Sbjct: 352 SETSGPHTVSNPQNYR-LLSCGKALPGCETKIH-----NPDADGI---GEICIWGRHVFM 402
Query: 480 GYYKREDLTKE-VMVDGWFHTG 500
GY E+ T+E + DGW H+G
Sbjct: 403 GYLNMEEKTEEAIDEDGWLHSG 424
|
This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594 |
| >gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 191 bits (486), Expect = 2e-54
Identities = 105/469 (22%), Positives = 179/469 (38%), Gaps = 79/469 (16%)
Query: 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGV 100
+ + A RNP+ R + TY+E+ ++ A++ GV
Sbjct: 8 TAELTLASLLERAARRNPD------RPALIFLGRGGRL-TYRELDRRANRLAAALQALGV 60
Query: 101 EERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKK 160
+ + I N PE++I A G VPL L + +I+ +G + +
Sbjct: 61 KPGDRVAILLPNSPEFLIAFLAALRAGAVAVPLNPRLTPRELAYILNDAGAKVLITSAEF 120
Query: 161 IPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKK 220
+L+ + + ++ + + + G D
Sbjct: 121 AA-LLEAVAEALPVVLVVL----------LVGDADDRLPITLEALAAEGPGPDADARPVD 169
Query: 221 KNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHI 280
+D+ ++YTSGTTG PKGV++++ N++ A + ++ LT +DV +S+LPL HI
Sbjct: 170 PDDLAFLLYTSGTTGLPKGVVLTHRNLL---ANAAGIAAALGGGLTPDDVVLSWLPLFHI 226
Query: 281 FDRAIEEVFIS---NGAAI---GFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQ 334
F + ++ G + D + +L I + K T+ VP L + L+
Sbjct: 227 F--GLIVGLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLREL---LDN 281
Query: 335 KISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGA 394
+K +RL+LSG
Sbjct: 282 P-----------------------------------------EKDDDDLSSSLRLVLSGG 300
Query: 395 APLTPHV-ETFLRVVACAHVLQGYGLTETCAG-TFVSLPNEMSMIGTVGPPVPNVDVCLE 452
APL P + E F +L+GYGLTET T + ++ G+VG P+P V+V +
Sbjct: 301 APLPPELLERFEERFGPIAILEGYGLTETSPVVTINPPDDLLAKPGSVGRPLPGVEVRIV 360
Query: 453 SVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV-DGWFHTG 500
+ + GE+ V+G V GY+ R + T E DGW TG
Sbjct: 361 DP---DGGEVLPGEVGEIWVRGPNVMKGYWNRPEATAEAFDEDGWLRTG 406
|
Length = 534 |
| >gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 176 bits (449), Expect = 3e-49
Identities = 108/467 (23%), Positives = 189/467 (40%), Gaps = 90/467 (19%)
Query: 48 DVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCG 107
+ R ++P+ +E V + TY E+ + V ++ NA+R GV++ +
Sbjct: 10 RILRHGARKHPD------KEAVYFDGRRT---TYAELDERVNRLANALRALGVKKGDRVA 60
Query: 108 IYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKT 167
++ N E++ A +G P+ L + +I+ + + V+ + +P +
Sbjct: 61 VFDWNSHEYLEAYFAVPKIGAVLHPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLLAAI 120
Query: 168 FPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTI 227
P+ ++T++ + V ++E L + FD P +ND +
Sbjct: 121 LPQLP-TVRTVIV---EGDGPAAPLAPE---VGEYEELLA-AASDTFDFPDIDENDAAAM 172
Query: 228 MYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEE 287
+YTSGTTG PKGV++S+ N+ V L KL+ +DVY+ +P+ H+ +
Sbjct: 173 LYTSGTTGHPKGVVLSHRNLFLHSLAVCAWL-----KLSRDDVYLVIVPMFHVHAWGLPY 227
Query: 288 VFISNGAAI---GFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKK 344
+ + GA R D + LL+ I + T F AVP + LLK
Sbjct: 228 LALMAGAKQVIPR--RFDPENLLDLIETERVTFFFAVPTIW-------------QMLLKA 272
Query: 345 TLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPH-VET 403
AY F +L RL++ G A L P +
Sbjct: 273 ---PRAYFVDFSSL-----------------------------RLVIYGGAALPPALLRE 300
Query: 404 FLRVVACAHVLQGYGLTETC-AGTF----VSLPNEMSMIGTVGPPVPNVDVCL-----ES 453
F ++QGYG+TET + LP + + + G P+P V+ + +
Sbjct: 301 FKEKFGID-LVQGYGMTETSPVVSVLPPEDQLPGQWTKRRSAGRPLPGVEARIVDDDGDE 359
Query: 454 VPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG 500
+P + GE+ V+G + GY+ R + T E + GW HTG
Sbjct: 360 LPPDGGEV------GEIIVRGPWLMQGYWNRPEATAETIDGGWLHTG 400
|
Length = 521 |
| >gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD | Back alignment and domain information |
|---|
Score = 166 bits (424), Expect = 4e-46
Identities = 104/461 (22%), Positives = 167/461 (36%), Gaps = 117/461 (25%)
Query: 48 DVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCG 107
D+ A R P+ R + K TY E+ +L + ++ GV++ +
Sbjct: 3 DLLERAARRFPD------RPALTFFGRKL---TYAELDELSDRFAAYLQQLGVKKGDRVA 53
Query: 108 IYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKT 167
+ NCP++ I G VP+ +E + SG + V
Sbjct: 54 LMLPNCPQFPIAYFGILKAGAVVVPVNPLYTPRELEHQLNDSGAKVLIV----------- 102
Query: 168 FPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTI 227
S+++ L G +D+ +
Sbjct: 103 -------------------------------AISFEDALASGAPLPL-PVELSPDDLAVL 130
Query: 228 MYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD-RAIE 286
YT GTTG PKG M+++ N+V A V+ + V + ED +++ LPL HIF
Sbjct: 131 QYTGGTTGVPKGAMLTHRNLV---ANVQQIAAWVKDLREGEDRFLTALPLFHIFGLTVNM 187
Query: 287 EVFISNGAAIGFW-RGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKT 345
+ + GA +L++I + TIF VP +Y+ L
Sbjct: 188 LLGLRLGATNVLVPNFRPINVLKEIKRYRFTIFPGVPT----LYNALLN----------- 232
Query: 346 LFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHV-ETF 404
+K ++ +RL +SG APL V E F
Sbjct: 233 ----HPEFKKYDFS--------------------------SLRLCISGGAPLPVEVAERF 262
Query: 405 LRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCL-----ESVPEMEY 459
+++GYGLTET T V+ + G++G P+P +V + +P E
Sbjct: 263 EEKTGAP-LVEGYGLTETSPVTTVNPLDGERKPGSIGLPLPGTEVKIVDDEGNELPPGE- 320
Query: 460 DALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG 500
GE+ V+G V GY+ R + T EV+ DGW TG
Sbjct: 321 -------VGELVVRGPQVMKGYWNRPEETAEVLTDGWLRTG 354
|
This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468 |
| >gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 160 bits (407), Expect = 2e-42
Identities = 97/317 (30%), Positives = 165/317 (52%), Gaps = 18/317 (5%)
Query: 189 REEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIV 248
+E+ +K G+++ +D+ + + + + + + I +I+YTSGT+G PKGVM+SN+N+
Sbjct: 272 KEKAKKLGISIILFDDMTK-NKTTNYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLY 330
Query: 249 -TFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKLLL 307
T + K S+ +K + ++SYLP++HI++R I + G I W D+
Sbjct: 331 NTVVPLCKH---SIFKKY-NPKTHLSYLPISHIYERVIAYLSFMLGGTINIWSKDINYFS 386
Query: 308 EDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEA 367
+DI K I VP+V +RIY+ + +I++ LK+ L K +L+K + +
Sbjct: 387 KDIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLVK-----KILSLRKSNNNGGF 441
Query: 368 SPIADKI--VFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAG 425
S + I + K+K + +IL+G L+P + L V+ + QGYGLTET
Sbjct: 442 SKFLEGITHISSKIKDKVNPNLEVILNGGGKLSPKIAEELSVLLNVNYYQGYGLTETTGP 501
Query: 426 TFVSLPNEMSMIGTVGPPVPNVDVCLESVPEME-YDALSSTPRGEVCVKGSTVFSGYYKR 484
FV ++ + GP PN V E Y A + P+GE+ +K ++FSGY+
Sbjct: 502 IFVQHADDNNTESIGGPISPNT---KYKVRTWETYKATDTLPKGELLIKSDSIFSGYFLE 558
Query: 485 EDLTKEVMV-DGWFHTG 500
++ TK DG+F TG
Sbjct: 559 KEQTKNAFTEDGYFKTG 575
|
Length = 746 |
| >gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 141 bits (357), Expect = 2e-36
Identities = 99/435 (22%), Positives = 161/435 (37%), Gaps = 83/435 (19%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLH-----CVPLY 134
TY E+ V + A+ G+ + + I+ N P W+I ALG VPL
Sbjct: 32 TYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIA-----ALGALKAGAVVVPLN 86
Query: 135 DTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEK 194
A +I+ FV + + L+ +V + + E K
Sbjct: 87 TRYTADEAAYILARGDAKALFVLGLFLGV-DYSATTRLPALEHVVICETEEDDPHTEKMK 145
Query: 195 YGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGV 254
++ +FL G+ + V +D+ I++TSGTTG PKG M+++ +++ A
Sbjct: 146 ------TFTDFLAAGDPAERAPEVDP-DDVADILFTSGTTGRPKGAMLTHRQLLSNAADW 198
Query: 255 KCLLESVNEKLTSEDVYVSYLPLAHIFD-RAIEEVFISNGAAI----GFWRGDVKLLLED 309
L LT D Y++ P H+F +A + GA I F D +
Sbjct: 199 AEYL-----GLTEGDRYLAANPFFHVFGYKAGVNAPLMRGATILPLPVF---DPDEVFRL 250
Query: 310 IGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASP 369
I + T+ P T++N + +S
Sbjct: 251 IETERITVLPGPP----------------------TMYNSLLQH-----PDRSAEDLSS- 282
Query: 370 IADKIVFDKVKQSFGGRVRLILSGAAPLTPH-VETFLRVVACAHVLQGYGLTETC-AGTF 427
+RL ++GAA + +E F + VL GYGL+E TF
Sbjct: 283 -----------------LRLAVTGAASMPVALLERFESELGVDIVLTGYGLSEASGVTTF 325
Query: 428 VSLPNEMSMI-GTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKRED 486
L ++ + GT+G + V+ + + E GE+ V+G V GYY +
Sbjct: 326 NRLDDDRKTVAGTIGTAIAGVENKIVNELGEEVPVGEV---GELLVRGPNVMKGYYDDPE 382
Query: 487 LTKEVM-VDGWFHTG 500
T + DGW HTG
Sbjct: 383 ATAAAIDADGWLHTG 397
|
Length = 513 |
| >gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I | Back alignment and domain information |
|---|
Score = 125 bits (316), Expect = 4e-32
Identities = 82/288 (28%), Positives = 121/288 (42%), Gaps = 60/288 (20%)
Query: 223 DICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282
D I+YTSGTTG PKGV++S+ N +A + L +++ LT DV +S LPL H+
Sbjct: 1 DPAFILYTSGTTGKPKGVVLSHRN---LLANAQALAQAIG--LTEGDVLLSVLPLFHVVG 55
Query: 283 R--AIEEVFISNGAAIGFWRGDV-KLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSG 339
+ ++ G + + LE I + + T+ VP + D +
Sbjct: 56 GGSGLLGALLAGGTVVLYEGFPFPLSFLELIEQYRVTVLFGVPTLYDAL----------- 104
Query: 340 GLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTP 399
K E +RL++SG PL+P
Sbjct: 105 ----------------------AKAAEDRGYDLS------------SLRLLISGGEPLSP 130
Query: 400 HV-ETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEME 458
+ E F +L+GYGLTET T + +E+ GTVG PVP V+V + V E E
Sbjct: 131 ELLERFEERPGAP-ILEGYGLTETSVVTSTNPDSELKKPGTVGRPVPGVEVRV--VDE-E 186
Query: 459 YDALSSTPRGEVCVKGSTVFSGYYKR-EDLTKEVMVDGWFHTG-MGVW 504
L GE+ V+G V GY+ + T DGW+ TG +G
Sbjct: 187 GKPLPPGEVGELVVRGPWVMKGYWNNPPETTAAATEDGWYRTGDLGYL 234
|
This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338 |
| >gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 126 bits (318), Expect = 3e-31
Identities = 86/296 (29%), Positives = 122/296 (41%), Gaps = 69/296 (23%)
Query: 217 PVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLP 276
V K++D+ + Y+SGTTG KGVM+++ N IA V L+ EDV + LP
Sbjct: 153 VVIKQDDVAALPYSSGTTGRSKGVMLTHRN---LIANVAQLVAGEGPNFDREDVTLCVLP 209
Query: 277 LAHIFD-----RAIEEVFISNGAAI----GFWRGDVKLLLEDIGELKPTIFCAVPRVLDR 327
+ HI+ A+ + GA + F D++ L I + K T VP ++
Sbjct: 210 MFHIYGLTVILLAL----LRLGATVVVMPRF---DLEKFLAAIEKYKVTHLPVVPPIV-- 260
Query: 328 IYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRV 387
L+K PI DK +KQ
Sbjct: 261 -----------LALVKH------------------------PIVDKYDLSSLKQ------ 279
Query: 388 RLILSGAAPLTPHV-ETFLRVVACAHVLQGYGLTETCAGTFVSLPNE-MSMIGTVGPPVP 445
I SGAAPL + E F + QGYG+TE+ T + E G+VG VP
Sbjct: 280 --IGSGAAPLGKELAEAFRARFPGVELGQGYGMTESSPVTTMCPVPEKDPKPGSVGRLVP 337
Query: 446 NVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV-DGWFHTG 500
NV+ + PE ++L GE+ V+G V GY + T E + DGW HTG
Sbjct: 338 NVEAKIVD-PETG-ESLPPNQPGELWVRGPQVMKGYLNNPEATAETIDKDGWLHTG 391
|
4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504 |
| >gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins | Back alignment and domain information |
|---|
Score = 118 bits (299), Expect = 1e-29
Identities = 82/293 (27%), Positives = 122/293 (41%), Gaps = 76/293 (25%)
Query: 223 DICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282
D I+YTSGTTG PKGVM+++ N++ V L L+ DVY+ PL H
Sbjct: 2 DPALILYTSGTTGRPKGVMLTHRNLLA--NAVNALAG---VDLSPGDVYLLAAPLYH--- 53
Query: 283 RAIEEVFISNGAAIG-----FWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKIS 337
A +F+ A G + D + +L+ I + T VP + R
Sbjct: 54 -AAGGLFLLPALAAGGTVVLMPKFDPEAVLDLIERHRVTHTFLVPTMFQR---------- 102
Query: 338 SGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPL 397
LL+ + F + S +RLI+ GAAP+
Sbjct: 103 ---LLR--------------------LPD---------FARYDLS---SLRLIIYGAAPM 127
Query: 398 TPHV-ETFLRVVACAHVLQGYGLTETCAGTFVSLPNEM-SMIGTVGPPVPNVDVCL---- 451
+ + +QGYG+TET T + P + +G+VG PVP V+V +
Sbjct: 128 PAELKRAMIEWFGPV-FVQGYGMTETGPTTTLLSPEDWLRKLGSVGRPVPGVEVRIVDED 186
Query: 452 -ESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG-MG 502
+P E GE+ V+G V +GY+ R + T E + DGW HTG +G
Sbjct: 187 GRELPPGE--------VGEIVVRGPAVMAGYWNRPEATAEALRDGWLHTGDLG 231
|
Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342 |
| >gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 2e-29
Identities = 73/292 (25%), Positives = 107/292 (36%), Gaps = 75/292 (25%)
Query: 223 DICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282
D I YTSGTTG PKG M+++ N++ + + LT D + +PL H+F
Sbjct: 3 DPALIQYTSGTTGRPKGAMLTHRNVLN---NGYSIARRL--GLTEGDRTLVPVPLFHVF- 56
Query: 283 RAIEEVF---ISNGAAI---GFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKI 336
+ ++ GA + + D L I + T VP +
Sbjct: 57 -GLVLGVLASLTAGATLVLMEKF--DPGAALRLIERERITALHGVPTMFIA--------- 104
Query: 337 SSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAP 396
LL+ F+ + +L+ G I GA
Sbjct: 105 ----LLEHPDFD---KFDLSSLRTG----------------------------ISGGAPV 129
Query: 397 LTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNE--MSMIGTVGPPVPNVDVCL--- 451
V A + GYG+TET + ++ GTVG P+P V+V +
Sbjct: 130 PPELVRRIREEFPMAEITTGYGMTETSGVGTQTSGDDPYEDRPGTVGRPLPGVEVKIVDP 189
Query: 452 --ESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEV-MVDGWFHTG 500
VP E GE+CV+G +V GYY + T E DGW HTG
Sbjct: 190 DGGEVPPGE--------VGEICVRGYSVMKGYYNDPEATAEAIDADGWLHTG 233
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347 |
| >gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 8e-29
Identities = 108/462 (23%), Positives = 172/462 (37%), Gaps = 116/462 (25%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGA 139
TY+E YD ++ +A+ G+ + + N P + G VPL L A
Sbjct: 31 TYRETYDRCRRLASALSKLGIGKGDVVAVLAPNTPAMLEAHFGVPMAGAVLVPLNTRLDA 90
Query: 140 GAVEFIICHSGVSIAFVEEKKIP--EMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGL 197
+ FI+ HS + FV+++ + E T E + T + E EE +
Sbjct: 91 DDIAFILNHSEAKVLFVDQEFLSLAEEALALLSTKEIIDTEIIVISPAAEDSEEGD---- 146
Query: 198 AVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCL 257
+++ L G+ +P + D ++ YTSGTTG+PKGV+ ++ A + L
Sbjct: 147 ----YEDLLAGGDPDPLPIPPDDEWDPISLNYTSGTTGNPKGVVYTHRG-----AYLNAL 197
Query: 258 LESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNG-------AAIG----FWRG-DVKL 305
+ + VY+ LP+ H NG A+G R D
Sbjct: 198 GNVIEWGMPDRPVYLWTLPMFH-----------CNGWCFPWAITAVGGTHVCLRKVDAPA 246
Query: 306 LLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHV 365
+ + I + K T C P VL+ L N
Sbjct: 247 IYDLIEKHKVTHLCGAPTVLN------------------MLANAP--------------- 273
Query: 366 EASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVAC-AHVLQGYGLTET-- 422
+ K VR++ +GA P P V ++ V YGLTET
Sbjct: 274 -----------EADKLPLPRPVRVMTAGAPP-PPAV--IKKMEELGFEVTHVYGLTETYG 319
Query: 423 ----CA--GTFVSLPNE----MSM---IGTVGPPVPNVDVCLESVPEMEYDALSSTPR-- 467
C + +LP E + + VG + VDV ++ + + PR
Sbjct: 320 PITVCEWKPEWDALPAEERARLKARQGVRYVG--LEEVDV-------VDPETMKDVPRDG 370
Query: 468 ---GEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG-MGVWE 505
GE+ ++G+TV GYYK + T+E GWFH+G + V
Sbjct: 371 KTIGEIVMRGNTVMKGYYKNPEATEEAFAGGWFHSGDLAVVH 412
|
This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520 |
| >gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 3e-28
Identities = 123/517 (23%), Positives = 195/517 (37%), Gaps = 124/517 (23%)
Query: 34 DGFPAPI-PGMESCWDVFRMAVERNPNNRML---GQREIVDGKAGKYVWKTYKEVYDLVI 89
P + G + D++ AV R + L G TY E+ V
Sbjct: 21 PWTPHDLDYGDTTLVDLYDNAVARFGDRPALDFFGATT------------TYAELGKQVR 68
Query: 90 KVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCV---PLYDTLGAGAVEFII 146
+ +R GV + I NCP+ I+ A LG V PLY A +E
Sbjct: 69 RAAAGLRALGVRPGDRVAIVLPNCPQHIVAFYAVLRLGAVVVEHNPLYT---AHELEHPF 125
Query: 147 CHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVS--FSKVKP---------------EQR 189
G +A V +K P ++ +TT L+TIVS P + R
Sbjct: 126 EDHGARVAIVWDKVAP-TVERLRRTTP-LETIVSVNMIAAMPLLQRLALRLPIPALRKAR 183
Query: 190 EEIEKYGLAVYSWDEFLQ---LGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNEN 246
+ W+ + G+ P +D+ I+YTSGTTG PKG +++ N
Sbjct: 184 AALTGPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRN 243
Query: 247 IVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIG-----FWRG 301
+ A K + + + E V + LP+ H + + +IG
Sbjct: 244 LFANAAQGKAWVPGLGDG--PERVLAA-LPMFHAYGLTLCLTL---AVSIGGELVLLPAP 297
Query: 302 DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKG 361
D+ L+L+ + + PT VP + ++I
Sbjct: 298 DIDLILDAMKKHPPTWLPGVPPLYEKI--------------------------------- 324
Query: 362 HKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPH-VETFLRVVACAHVLQGYGLT 420
EA+ + V+ +F SGA L VE + ++ +++GYGLT
Sbjct: 325 ---AEAAE-ERGVDLSGVRNAF--------SGAMALPVSTVELWEKLTG-GLLVEGYGLT 371
Query: 421 ETCAGTFVSLPNEMS---MIGTVGPPVPNVDVCL-------ESVPEMEYDALSSTPRGEV 470
ET + + N MS G VG P P+ +V + E++P+ E GE+
Sbjct: 372 ETSP---IIVGNPMSDDRRPGYVGVPFPDTEVRIVDPEDPDETMPDGE--------EGEL 420
Query: 471 CVKGSTVFSGYYKREDLTKEVMVDGWFHTG-MGVWEQ 506
V+G VF GY+ R + T + +DGWF TG + V E+
Sbjct: 421 LVRGPQVFKGYWNRPEETAKSFLDGWFRTGDVVVMEE 457
|
Length = 573 |
| >gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 1e-27
Identities = 109/475 (22%), Positives = 184/475 (38%), Gaps = 105/475 (22%)
Query: 61 RMLGQREIV-DGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIG 119
R G REIV G TY + Y V ++ NA+ + GV+ + N +
Sbjct: 7 RYFGDREIVSRTPDGSIHRYTYADFYRRVRRLANALESLGVKPGDRVATLAWNTHRHLEL 66
Query: 120 MEACNALG--LHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKT 177
A +G LH + L + +II H+ + FV++ +P +L+ +K
Sbjct: 67 YFAVPGMGAVLHTLNP--RLSPEQIAYIINHAEDKVIFVDDDFLP-LLEAIAPRLPTVKA 123
Query: 178 IVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDP 237
+V + + VY+++E L+ E+ +++ P +N + YTSGTTG+P
Sbjct: 124 VVVYDDADMPETS-----LPNVYAYEELLE-EESPEYEWPELDENTAAGLCYTSGTTGNP 177
Query: 238 KGVMVSNENIV--TFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAA 295
KGV+ S+ ++V T + L +S+ L+ D + +P+ H+ N
Sbjct: 178 KGVVYSHRSLVLHTLAS---ALPDSLG--LSESDTVLPVVPMFHV-----------NAWG 221
Query: 296 IGF---WRG----------DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLL 342
+ + G D LL+ I E K T+ VP + GLL
Sbjct: 222 LPYAATMVGAKLVLPGRYLDPASLLDLIEEEKVTVSAGVPTIW-------------LGLL 268
Query: 343 KKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVE 402
L+ K R+++ G+A +E
Sbjct: 269 N-------------YLEANGKD------------------LSSLRRVVVGGSALPRSLIE 297
Query: 403 TFLRVVACAHVLQGYGLTETC-AGTFVSLPNEMSMIG---------TVGPPVPNVDVCL- 451
V+ +G+TET GT L + + G PVP V++ +
Sbjct: 298 KLEE--RGVEVIHAWGMTETSPLGTVSRLKPHLVDLPEEEKLELRAKQGRPVPGVELRIV 355
Query: 452 -ESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG-MGVW 504
+ E+ +D + GE+ V+G V YYK + T+E+ DGWF TG + V
Sbjct: 356 DDEGNELPWDGKTV---GELVVRGPWVTGSYYKDPEKTEELTRDGWFRTGDVAVI 407
|
This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517 |
| >gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE) | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 1e-26
Identities = 70/290 (24%), Positives = 112/290 (38%), Gaps = 77/290 (26%)
Query: 223 DICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282
TI++TSG+TG PK V+ + N + G L LT +D ++ LPL H+
Sbjct: 78 RPATIIFTSGSTGKPKAVVHTWGNHLASARGSAENL-----GLTPDDNWLLSLPLFHVSG 132
Query: 283 RAIEEVFIS--NGAAIGFW-RGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSG 339
AI V S G A+ + D + + E + T VP L R+ L + S
Sbjct: 133 LAI--VMRSLLAGGALVLPDKFDAEAIAEALENHGVTHISLVPTQLQRLLESLGARWLS- 189
Query: 340 GLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTP 399
+R +L G AP+ P
Sbjct: 190 ----------------------------------------------SLRAVLLGGAPIPP 203
Query: 400 HVETFLRVVACAH--VLQGYGLTETCAGTFVSLPNEMSM--IGTVGPPVPNVDVCLESVP 455
+ L + YG+TET + +L + + +G+VG P+P ++ + +
Sbjct: 204 ---SLLEQARQRGIPLYPTYGMTETAS-QVATLKPDDFLAKLGSVGKPLPGRELRIVNPQ 259
Query: 456 EMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG-MGVW 504
+ GE+ V+G ++F GY + LT + DGWFHTG +G
Sbjct: 260 D-----------GEILVRGPSLFLGYLPQGGLTPPLDEDGWFHTGDLGYL 298
|
O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407 |
| >gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 7e-26
Identities = 91/431 (21%), Positives = 149/431 (34%), Gaps = 103/431 (23%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGA 139
T++++ + A++ G+ + + G N E ++ + AC LG L L
Sbjct: 1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTE 60
Query: 140 GAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAV 199
+ V ++L T E S +++ R E
Sbjct: 61 NERTNQLEDLDV-----------QLLLTDSLLEEKDFQADSLDRIEAAGRYETSL----- 104
Query: 200 YSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLE 259
+ F++ + I T+M+TSGTTG PK V + N G K L
Sbjct: 105 -----------SASFNM-----DQIATLMFTSGTTGKPKAVPHTFRNHYASAVGSKENL- 147
Query: 260 SVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFC 319
T +D ++ LPL HI +I ++ GA + +LL E I + T
Sbjct: 148 ----GFTEDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDKFNQLL-EMIANERVTHIS 202
Query: 320 AVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKV 379
VP L+R LL + HN
Sbjct: 203 LVPTQLNR-------------LLDEGG---------HNE--------------------- 219
Query: 380 KQSFGGRVRLILSGAAPLTPHVETFLRVVACAHV--LQGYGLTETCAGTFVSLPNEMSM- 436
+R IL G + + + + YG+TETC+ + EM
Sbjct: 220 ------NLRKILLGGSAIP---APLIEEAQQYGLPIYLSYGMTETCS-QVTTATPEMLHA 269
Query: 437 IGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGW 496
VG P+ ++ ++ V E GE+ VKG+ + GY + +LT GW
Sbjct: 270 RPDVGRPLAGREIKIK-VDNKE-------GHGEIMVKGANLMKGYLYQGELTPAFEQQGW 321
Query: 497 FHTG-MGVWEQ 506
F+TG +G +
Sbjct: 322 FNTGDIGELDG 332
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436 |
| >gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS) | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 8e-26
Identities = 85/298 (28%), Positives = 128/298 (42%), Gaps = 74/298 (24%)
Query: 223 DICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282
D I+YTSGTTG PKGV++++ N+ A + L+E+ + T+ DV + LPL H+
Sbjct: 89 DPALIIYTSGTTGRPKGVVLTHGNL---AANARALVEAW--RWTASDVLLHALPLHHVHG 143
Query: 283 RAIEEVFISNGAAIGFWRG---------DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLN 333
+ N W G D + + T+F VP IY+ L
Sbjct: 144 -------LFNALHCPLWAGASVEFLPRFDPQERDALRLLPRITVFMGVPT----IYTRL- 191
Query: 334 QKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSG 393
L+ A+ A + RL +SG
Sbjct: 192 ------------------------LEHYEFDDAAAAAARNL-------------RLFVSG 214
Query: 394 AAPLTPHV-ETFLRVVACAH-VLQGYGLTETCAGTFVSLP-NEMSMIGTVGPPVPNVDVC 450
+A L V E + H +L+ YG+TET G +S P + GTVG P+P V+V
Sbjct: 215 SAALPVPVLERWEERTG--HTLLERYGMTET--GMALSNPLDGERRPGTVGLPLPGVEVR 270
Query: 451 LESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV-DGWFHTG-MGVWEQ 506
+ V E + L++ GE+ V+G VFS Y+ + + T E DGWF TG +GV ++
Sbjct: 271 I--VDEDGGEPLAAGEVGEIQVRGPNVFSEYWNKPEATAEAFTEDGWFKTGDVGVVDE 326
|
MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430 |
| >gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas) | Back alignment and domain information |
|---|
Score = 106 bits (268), Expect = 8e-25
Identities = 79/305 (25%), Positives = 117/305 (38%), Gaps = 82/305 (26%)
Query: 212 KQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVY 271
+ L K +D I++TSG+ G PKGV++S+ N++ I + +++ L +EDV
Sbjct: 135 LRLFLAGAKPDDPAVILFTSGSEGLPKGVVLSHRNLLANIDQIAAVID-----LNTEDVL 189
Query: 272 VSYLPLAHIFDRAIEEVFISNGAAIGFW----RG----------DVKLLLEDIGELKPTI 317
+ LPL H F G + G D K + E I + K TI
Sbjct: 190 LGALPLFHAF-----------GLTVTLLLPLLTGLRVVYYPNPLDAKKIAELIRDYKATI 238
Query: 318 FCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFD 377
C P L R Y + H +S
Sbjct: 239 LCGTPTFL-RGY----------------------------ARNAHPEDFSS--------- 260
Query: 378 KVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMI 437
+RL+++GA L +L+GYG TE V+ P +
Sbjct: 261 ---------LRLVVAGAEKLPEATRELFEEKFGIRILEGYGATECSPVISVNTPMG-NKP 310
Query: 438 GTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV--DG 495
GTVG P+P ++V + S E + G + V+G V SGY E+ T EV V DG
Sbjct: 311 GTVGRPLPGIEVRIVSPETHEELPIGEG--GLLLVRGPNVMSGYLNNEEKTSEVEVLGDG 368
Query: 496 WFHTG 500
W+ TG
Sbjct: 369 WYDTG 373
|
Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489 |
| >gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 3e-24
Identities = 116/446 (26%), Positives = 191/446 (42%), Gaps = 85/446 (19%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALG---LHCVPLYD- 135
T+ +D V + N ++ GVE+ + I NCP+ +IG G + PLY
Sbjct: 51 TFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVVQTNPLYTE 110
Query: 136 -----TLGAGAVEFIIC-----------HSGVSIAFVEEKKIPEMLKTFPKTTEH--LKT 177
L + I+C S I V +I + L FPK + ++
Sbjct: 111 RELEYQLHDSGAKVILCLDLVFPRVTNVQSATKIEHVIVTRIADFLP-FPKNLLYPFVQK 169
Query: 178 IVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDP 237
S VK + E I + W+ ++ N ++P +ND+ + YT GTTG P
Sbjct: 170 KQSNLVVKVSESETI-------HLWNS-VEKEVNTGVEVPCDPENDLALLQYTGGTTGFP 221
Query: 238 KGVMVSNENIVT-FIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD-RAIEEVFISNG-A 294
KGVM++++N+V+ + GV+ L E+V + LP H++ A+ + I G
Sbjct: 222 KGVMLTHKNLVSNTLMGVQWLYNCKE----GEEVVLGVLPFFHVYGMTAVMNLSIMQGYK 277
Query: 295 AIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYK 354
+ + D+K++ E I + K T+F P IY L + LLK+ ++I+
Sbjct: 278 MVLIPKFDMKMVFEAIKKHKVTLFPGAPT----IYIAL----LNSPLLKE--YDIS---- 323
Query: 355 FHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVL 414
+R +SG+APL V+ V ++
Sbjct: 324 -------------------------------SIRACISGSAPLPVEVQEKFETVTGGKLV 352
Query: 415 QGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKG 474
+GYGLTE+ T + E + G++G P P+ + + S+ E AL GE+ VKG
Sbjct: 353 EGYGLTESSPVTHSNFLWEKRVPGSIGVPWPDTEAMIMSLETGE--ALPPGEIGEIVVKG 410
Query: 475 STVFSGYYKREDLTKEVMVDGWFHTG 500
+ GY+ + + T V+ DGW HTG
Sbjct: 411 PQIMKGYWNKPEETAAVLQDGWLHTG 436
|
Length = 563 |
| >gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 6e-24
Identities = 72/286 (25%), Positives = 118/286 (41%), Gaps = 64/286 (22%)
Query: 222 NDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIF 281
+D I++TSGTTG PKGV ++++N++ + + + KLT D ++ +PL HI
Sbjct: 2 DDPALILHTSGTTGRPKGVPLTHKNLLASARNI-----AKSHKLTPSDRCLNVMPLFHIH 56
Query: 282 DRAIEEV--FISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSG 339
+ + ++ G+ + + +DI + + T + AVP
Sbjct: 57 GLIVSLLATLLAGGSVVCPPKFSASKFWDDIAKYRVTWYSAVP----------------- 99
Query: 340 GLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTP 399
T+ I LK + P R+R I S +APL P
Sbjct: 100 -----TIHQIL-------LKTAKPNPGKPPP---------------RLRFIRSASAPLPP 132
Query: 400 HV----ETFLRVVACAHVLQGYGLTETCAGTFVS-LPNEMSMIGTVGPPVPNVDVCLESV 454
V E V VL+ YG+TE + LP + G+VG P V+V ++
Sbjct: 133 AVLDRLEKRFGV----PVLEAYGMTEAAHQIASNPLPPLVRKPGSVGRPAG-VEV---AI 184
Query: 455 PEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG 500
+ + L GE+ ++G V +GY + +E DGWF TG
Sbjct: 185 LDDDGRPLPPGQEGEIVIRGPNVTAGYLNNPEANREAFRDGWFRTG 230
|
FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345 |
| >gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 1e-23
Identities = 89/441 (20%), Positives = 140/441 (31%), Gaps = 101/441 (22%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCG----IYGVNCPEWIIGMEACNALGLHCVPLYD 135
TY ++ V ++ NA++ + G G IY N PE +I + A +G +
Sbjct: 42 TYGDLRREVARLANALK----DLGGVKGDRVAIYMPNSPEAVIALLATARIGAIPAVVSP 97
Query: 136 TLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKY 195
L A AV I G + T + K I +
Sbjct: 98 GLSAEAVADRIADLGPKVLI-----------ADDGTFRNGKEIALLEDAD-AVLSSVVVV 145
Query: 196 GLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIA-GV 254
+DE ++ +++F+ +D ++YTSGTTG PKG++ S+ +
Sbjct: 146 PRLGLWYDEAVE-KASEKFEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTA 204
Query: 255 KCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFIS---NGAAIGFWRG----DVKLLL 307
K L D + + I+ + S +GA + G + L
Sbjct: 205 KFHG-----DLLPGDRFWNSSDPGWIY--GLWYSVFSPLASGATTVLYDGRPFYSPERLW 257
Query: 308 EDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEA 367
E + + K TIF P L R L K
Sbjct: 258 EALEKYKVTIFGTSPTFLRR--------------LMK----------------------- 280
Query: 368 SPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHV-ETFLRVVACAHVLQGYGLTETCAGT 426
+ +R++ S PL P E F + +L YG TET G
Sbjct: 281 --------LGLGEPYDLSSLRVLGSAGEPLNPEAFEWFYSALGV-WILDIYGQTETGMGF 331
Query: 427 FVSLPNEMSMIGTVGPPVPNVDVCL-----ESVPEMEYDALSSTPRGEVCVKGST--VFS 479
P G+ G P+P V VP GE+ V+ +
Sbjct: 332 IAGRPP--VKNGSSGLPLPGYAVRRVDDEGNPVPPGV---------GELVVRLPWPGMAL 380
Query: 480 GYYKREDLTKEVMVDGWFHTG 500
Y+ + KE W+ TG
Sbjct: 381 TYWNDPERYKEAYFGRWYRTG 401
|
Length = 528 |
| >gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 1e-23
Identities = 99/433 (22%), Positives = 157/433 (36%), Gaps = 97/433 (22%)
Query: 80 TYKEVYDLVIKVVNAIR-TCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLG 138
TYK++++ V KV + V++ + I N E+I+ + A + VPL L
Sbjct: 29 TYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECIAVPLNIRLT 88
Query: 139 AGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLA 198
+ F + SG ++ FVE KTF ++ + +V I L
Sbjct: 89 ENELIFQLKDSGTTVLFVE--------KTFQNMALSMQKVSYVQRV-------ISITSLK 133
Query: 199 VYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLL 258
++ + K + K ++ I YTSGTTG PKG +++ EN+ F +
Sbjct: 134 --------EIEDRKIDNFVEKNESASFIICYTSGTTGKPKGAVLTQENM--FWNALNNTF 183
Query: 259 ESVNEKLTSEDVYVSYLPLAHI-----FDRAIEEVFISNGAAIGFWRGDVKLLLEDIGEL 313
LT D + LPL HI F A +F + G I + + L I +
Sbjct: 184 AI---DLTMHDRSIVLLPLFHIGGIGLF--AFPTLF-AGGVIIVPRKFEPTKALSMIEKH 237
Query: 314 KPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADK 373
K T+ VP + H+ + +
Sbjct: 238 KVTVVMGVPTI-------------------------------------HQALINCSKFET 260
Query: 374 IVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQG--YGLTETCAGTFVSLP 431
VR +G AP E +R L G +G+TET F+
Sbjct: 261 TNLQS--------VRWFYNGGAPCP---EELMREFIDRGFLFGQGFGMTETSPTVFMLSE 309
Query: 432 NEMS-MIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEV---CVKGSTVFSGYYKREDL 487
+ +G++G PV D L + + GEV ++G V Y+ R D
Sbjct: 310 EDARRKVGSIGKPVLFCDYELID------ENKNKVEVGEVGELLIRGPNVMKEYWNRPDA 363
Query: 488 TKEVMVDGWFHTG 500
T+E + DGW TG
Sbjct: 364 TEETIQDGWLCTG 376
|
Length = 496 |
| >gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase) | Back alignment and domain information |
|---|
Score = 99.6 bits (249), Expect = 2e-22
Identities = 92/432 (21%), Positives = 148/432 (34%), Gaps = 124/432 (28%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGV-NCPEWIIGMEACNALGLHCVPLYDTLG 138
TY E+ D ++ A+ GV G + + N E+++ AC +G P+
Sbjct: 3 TYGELDDAADRLAAALAELGVR-PGDVVAFQLPNWWEFVVVYLACARIGAVINPIVPIYR 61
Query: 139 AGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLA 198
+ FI+ + + F +P+ + F
Sbjct: 62 ERELGFILRQARARVLF-----VPDEFRGFD----------------------------- 87
Query: 199 VYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLL 258
+ + +D+ ++YTSGTTG+PKGVM ++ ++ + L
Sbjct: 88 ------YAAMP------------DDVALLLYTSGTTGEPKGVMHTHNTLLAEVRSYVERL 129
Query: 259 ESVNEKLTSEDVYVSYLPLAHI--FDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPT 316
LT +DV + PLAHI F +E + + R D LE I E T
Sbjct: 130 G-----LTPDDVVLMPSPLAHITGFLYGLELPLLLGATVVLQDRWDPARALELIREHGVT 184
Query: 317 IFC-AVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIV 375
A P + D LL +A+
Sbjct: 185 FTMGATPFLAD--------------LLA--------------------AADAAGPDL--- 207
Query: 376 FDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAH------VLQGYGLTETCAGTFVS 429
+R+ L G AP+ + A V++ YG+TE T +
Sbjct: 208 ---------PSLRVFLCGGAPVPR------ELARRAAEALGAKVVRAYGMTEVPLVTVGT 252
Query: 430 LPNEMSMI-GTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLT 488
+ T G PVP V+V + V + + + GE+ V+G +F GY D T
Sbjct: 253 PDDPDDKRAATDGRPVPGVEVRI--VDDDG-NDVPPGEEGELQVRGPQLFLGYLDPPDNT 309
Query: 489 KEVMVDGWFHTG 500
+ DGWF TG
Sbjct: 310 EAFTDDGWFRTG 321
|
Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437 |
| >gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 98.4 bits (245), Expect = 9e-22
Identities = 87/290 (30%), Positives = 124/290 (42%), Gaps = 66/290 (22%)
Query: 222 NDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIF 281
+DI + YT GTTG KG M+++ N+V + L + +V ++ LPL HIF
Sbjct: 208 DDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGKLEEGCEVVITALPLYHIF 267
Query: 282 D-RAIEEVF---------ISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSG 331
A VF ISN + G VK ELK T F A ++G
Sbjct: 268 ALTANGLVFMKIGGCNHLISNPRDM---PGFVK-------ELKKTRFTA--------FTG 309
Query: 332 LNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLIL 391
+N TLFN N +P D+I F +K + GG
Sbjct: 310 VN-----------TLFN-----GLLN----------TPGFDQIDFSSLKMTLGG------ 337
Query: 392 SGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCL 451
G A E + +V V + YGLTET ++ G++G P+P+ D C+
Sbjct: 338 -GMAVQRSVAERWKQVTGLTLV-EAYGLTETSPAACINPLTLKEYNGSIGLPIPSTDACI 395
Query: 452 ESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTG 500
+ + L+ GE+C+KG V GY+KR + T +VM DGW HTG
Sbjct: 396 K---DDAGTVLAIGEIGELCIKGPQVMKGYWKRPEETAKVMDADGWLHTG 442
|
Length = 560 |
| >gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 98.2 bits (245), Expect = 9e-22
Identities = 92/349 (26%), Positives = 150/349 (42%), Gaps = 83/349 (23%)
Query: 167 TFPKTTEHLKTIVSFSKVKPEQREEIEKYGL--AVYSWDEFLQLGENKQFDLPVKKKNDI 224
+ K T+V+F VK +R + KY L A+ S+ L G Q+ P D+
Sbjct: 157 STAK-----GTLVNFV-VKYIKRL-VPKYHLPDAI-SFRSALHKGRRMQYVKPELVPEDL 208
Query: 225 CTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIF--- 281
+ YT GTTG KG M+++ N++ + K + +++ V+ LPL HIF
Sbjct: 209 AFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGPLLHP--GKELVVTALPLYHIFALT 266
Query: 282 -------DRAIEEVFISNGAAI-GFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLN 333
+ + + I+N I GF + ELK F A+ +G+N
Sbjct: 267 VNCLLFIELGGQNLLITNPRDIPGF-----------VKELKKYPFTAI--------TGVN 307
Query: 334 QKISSGGLLKKTLFN-IAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILS 392
TLFN + + +F L F +K S GG
Sbjct: 308 -----------TLFNALLNNEEFQELD----------------FSSLKLSVGG------- 333
Query: 393 GAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMI-GTVGPPVPNVDVCL 451
G A E ++++ ++L+GYGLTE C+ P ++ G++G PVP+ ++
Sbjct: 334 GMAVQQAVAERWVKLTGQ-YLLEGYGLTE-CSPLVSVNPYDLDYYSGSIGLPVPSTEI-- 389
Query: 452 ESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG 500
+ + + + + GE+ VKG V GY++R + T EV+ DGW TG
Sbjct: 390 -KLVDDDGNEVPPGEPGELWVKGPQVMLGYWQRPEATDEVIKDGWLATG 437
|
Length = 560 |
| >gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain | Back alignment and domain information |
|---|
Score = 95.8 bits (239), Expect = 2e-21
Identities = 60/291 (20%), Positives = 108/291 (37%), Gaps = 76/291 (26%)
Query: 222 NDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIF 281
+D+ ++YTSG+TG PKGV+V++ ++V +A + L +D + + L+ F
Sbjct: 120 DDLAYVIYTSGSTGRPKGVVVTHRSLVNLLAWLARRYG-----LDPDDRVLQFASLS--F 172
Query: 282 DRAIEEVF--ISNGAA--------IGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSG 331
D ++EE+F + GA + L+ E T+ P +L + +
Sbjct: 173 DASVEEIFGALLAGATLVVPPEDEERDDAALLAALIA---EHPVTVLNLTPSLLALLAAA 229
Query: 332 LNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLIL 391
L ++S +RL++
Sbjct: 230 LPPALAS------------------------------------------------LRLVI 241
Query: 392 SGAAPLTP-HVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGT----VGPPVPN 446
G LTP V+ + A ++ YG TET + +L + +G P+ N
Sbjct: 242 LGGEALTPALVDRWRARGPGARLINLYGPTETTVWSTATLVDPDDAPRESPVPIGRPLAN 301
Query: 447 VDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWF 497
+ + ++ + GE+ + G V GY R +LT E V F
Sbjct: 302 TRLYVLD-DDLRPVPVGVV--GELYIGGPGVARGYLNRPELTAERFVPDPF 349
|
This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409 |
| >gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 93.5 bits (233), Expect = 2e-20
Identities = 50/135 (37%), Positives = 69/135 (51%), Gaps = 13/135 (9%)
Query: 368 SPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHV-ETFLRVVACAHVLQGYGLTETCAGT 426
SP+ DK +R+I SGAAPL+ + E + + QGYG+TET T
Sbjct: 254 SPLVDKYDL--------SSLRVIFSGAAPLSKELQEELRKRFPNTTIKQGYGMTETGPAT 305
Query: 427 FVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKRED 486
++ P + G+VG VPNV+ + V E +L RGE+CVKG + GY +
Sbjct: 306 TLTPPGDEKP-GSVGRLVPNVEAKI--VDEDGGKSLGPNERGELCVKGPQIMKGYLNNPE 362
Query: 487 LTKEVMV-DGWFHTG 500
TKE + DGW HTG
Sbjct: 363 ATKETIDEDGWLHTG 377
|
This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487 |
| >gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 93.7 bits (233), Expect = 2e-20
Identities = 82/298 (27%), Positives = 134/298 (44%), Gaps = 53/298 (17%)
Query: 206 LQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLES-VNEK 264
L G + + +D+ + YT GTTG KG M+++ N+V + + L+ S +NE
Sbjct: 191 LAKGAGQPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSNLNE- 249
Query: 265 LTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRV 324
++ ++ LPL HI+ F + A+ G+ +L+ + PR
Sbjct: 250 --GCEILIAPLPLYHIY------AFTFHCMAM-MLIGNHNILISN------------PRD 288
Query: 325 LDRIYSGLNQKISSGGLLKKTLFN-IAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSF 383
L + L + SG + TLF + + F L F +K +
Sbjct: 289 LPAMVKELGKWKFSGFVGLNTLFVALCNNEAFRKLD----------------FSALKLTL 332
Query: 384 GGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPP 443
G + L L+ A E + V CA + +GYG+TET V+ P++ +GT+G P
Sbjct: 333 SGGMALQLATA-------ERWKEVTGCA-ICEGYGMTETSPVVSVN-PSQAIQVGTIGIP 383
Query: 444 VPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTG 500
VP+ L V + + + L GE+CVKG V GY++R + T E++ DGW TG
Sbjct: 384 VPST---LCKVIDDDGNELPLGEVGELCVKGPQVMKGYWQRPEATDEILDSDGWLKTG 438
|
Length = 562 |
| >gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 89.0 bits (222), Expect = 5e-19
Identities = 66/290 (22%), Positives = 109/290 (37%), Gaps = 75/290 (25%)
Query: 222 NDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIF 281
+D+ ++YTSG+TG PKGVMV + +V +A ++ LT+ D + + + F
Sbjct: 93 DDLAYVIYTSGSTGRPKGVMVEHRGLVNLLAWLQERYG-----LTAGDRVLQFASFS--F 145
Query: 282 DRAIEEVFIS--NGAAIGF----WRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQK 335
D ++ E+F +GA + D + L E + E + T+ VP +L
Sbjct: 146 DASVWEIFPPLLSGATLVLAPPEVLRDPEALAELLREHRITVLHLVPSLL---------- 195
Query: 336 ISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAA 395
+ L + +L+ +I+ G A
Sbjct: 196 --------RALLDALEPAALPSLR----------------------------LVIVGGEA 219
Query: 396 PLTPHVETFLRVVACAHVLQGYGLTETCAG-TFVSLPNEMSMIGTV--GPPVPNVDVC-- 450
V + + A ++ YG TET T+ + + G+V G P+ N V
Sbjct: 220 LPAELVRRWRELFPGARLVNAYGPTETTVDVTYHEVDPDDLDGGSVPIGRPIANTRVYVL 279
Query: 451 ---LESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWF 497
L VP GE+ + G+ V GY R +LT E V F
Sbjct: 280 DEDLRPVPVGV--------PGELYIGGAGVARGYLNRPELTAERFVPDPF 321
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445 |
| >gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase) | Back alignment and domain information |
|---|
Score = 89.7 bits (223), Expect = 5e-19
Identities = 91/432 (21%), Positives = 154/432 (35%), Gaps = 85/432 (19%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGA 139
TY E+ + V + NA+R G+E + + ++ PE+ +G VP+ L
Sbjct: 32 TYGELQEEVNRWGNALRELGIERENRVLLILLDTPEFPTAFWGAIKIGAVPVPINTLLTP 91
Query: 140 GAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAV 199
+ + S + + E+ + E+LK + HL+ ++ P
Sbjct: 92 DDYRYYLNDSRARVLVISEE-LWEVLKPALQKDPHLRHVIVVGGAGPGA----------- 139
Query: 200 YSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENI-VTFIAGVKCLL 258
L ++ + +D+ +Y+SG+TG PKGV+ + ++ VT A K +L
Sbjct: 140 -LSYAQLIATAAEELEAAATSADDMAFWLYSSGSTGRPKGVVHLHHDMLVTAEAYAKNVL 198
Query: 259 ESVNEKLTSEDVY--VSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVK--LLLEDIGELK 314
+T +DV + L A+ + S GA + I K
Sbjct: 199 -----GITEDDVVFSAAKLFFAYGLGNGLYFPL-SVGATTVLMPERPTPDAVFATIERYK 252
Query: 315 PTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKI 374
PT+F VP TL+ +
Sbjct: 253 PTVFFGVP----------------------TLYA------------------------AM 266
Query: 375 VFDKVKQSFG-GRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNE 433
+ K +RL +S L + + + +L G G TE + P
Sbjct: 267 LAAPEKPERDLSSLRLCVSAGEALPAEIGYRWKELFGLEILDGIGSTEMLHIFLSNRPGA 326
Query: 434 MSMIGTVGPPVPNVDVCL-----ESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLT 488
+ GT G PVP +V L E V + E GE+ V+G + +GY+ R + T
Sbjct: 327 VKY-GTSGKPVPGYEVKLVDEDGEEVADGEI--------GELWVRGDSSAAGYWNRREKT 377
Query: 489 KEVMVDGWFHTG 500
+E V W TG
Sbjct: 378 RETFVGEWTRTG 389
|
Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506 |
| >gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 86.9 bits (216), Expect = 4e-18
Identities = 64/287 (22%), Positives = 112/287 (39%), Gaps = 41/287 (14%)
Query: 48 DVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCG 107
D+ R + R P+ L + W TY E+ V +V A+ G+++ +
Sbjct: 15 DILRRSARRYPDKTALVFGDRS--------W-TYAELDAAVNRVAAALLDLGLKKGDRVA 65
Query: 108 IYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKT 167
G N + + AC G VP+ L + +I+ HSG V+ P + T
Sbjct: 66 ALGHNSDAYALLWLACARAGAVHVPVNFMLTGEELAYILDHSGARAFLVD----PALAPT 121
Query: 168 FPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTI 227
L + RE + ++ + G + D+ + +D+ I
Sbjct: 122 AEAALALLPVDTLILSLVLGGRE----APGGWLDFADWAEAGSVAEPDVEL-ADDDLAQI 176
Query: 228 MYTSGTTGDPKGVMVSNENIV-----TFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282
+YTSGT PKG M+++ ++ +AG ++++D+ + LPL H
Sbjct: 177 LYTSGTESLPKGAMLTHRALIAEYVSCIVAG----------DMSADDIPLHALPLYHC-- 224
Query: 283 RAIEEVFISNGAAIGFW-----RGDVKLLLEDIGELKPTIFCAVPRV 324
A +VF+ +G D +L+L I + T F A P V
Sbjct: 225 -AQLDVFLGPYLYVGATNVILDAPDPELILRTIEAERITSFFAPPTV 270
|
Length = 523 |
| >gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 85.5 bits (212), Expect = 1e-17
Identities = 86/309 (27%), Positives = 132/309 (42%), Gaps = 63/309 (20%)
Query: 206 LQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKL 265
L G + F +D+ + YT GTTG KG + + NIV + ++ L+ EK
Sbjct: 188 LAEGARQTFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKK 247
Query: 266 TSED--VYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKLLLED-------IGELKPT 316
D +V LPL HIF A+ + +G G +L+ + I ELK
Sbjct: 248 PRPDQLNFVCALPLYHIF--ALTVCGL-----LGMRTGGRNILIPNPRDIPGFIKELKKY 300
Query: 317 IFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVF 376
P +N TL+N +N P DK+ F
Sbjct: 301 QVHIFP--------AVN-----------TLYNAL----LNN-----------PDFDKLDF 326
Query: 377 DKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSM 436
K+ + GG G A P E +L + C + +GYGL+ET + +
Sbjct: 327 SKLIVANGG-------GMAVQRPVAERWLEMTGC-PITEGYGLSETSPVATCNPVDATEF 378
Query: 437 IGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV-DG 495
GT+G P+P+ +V S+ + + + L GE+C++G V +GY+ R D T +VM DG
Sbjct: 379 SGTIGLPLPSTEV---SIRDDDGNDLPLGEPGEICIRGPQVMAGYWNRPDETAKVMTADG 435
Query: 496 WFHTG-MGV 503
+F TG +GV
Sbjct: 436 FFRTGDVGV 444
|
Length = 557 |
| >gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS) | Back alignment and domain information |
|---|
Score = 85.4 bits (212), Expect = 1e-17
Identities = 73/296 (24%), Positives = 113/296 (38%), Gaps = 78/296 (26%)
Query: 223 DICTIMYTSGTTGDPKGVMVSNENIVTFIAGVK-CLLESVNEKLTSEDVYVSYLPLAHIF 281
+ ++TSG+TG PK V+ ++ + A + C E V V +LP H F
Sbjct: 165 TVAKYLFTSGSTGLPKAVINTHRMLCANQAMIAQCWPFLTEEPP----VLVDWLPWNHTF 220
Query: 282 DRAIEEVFISNGAAIGFWRGDVKLLLEDIGEL-----KPTIFCAVPRVLDRIYSGLNQKI 336
G F ++L + G L KP
Sbjct: 221 -----------GGNHNF-----NMVLYNGGTLYIDDGKPV-------------------- 244
Query: 337 SSGGLLKKTLFN---IAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSG 393
GL ++TL N ++ + F N+ KG + + + D +++ F R+RL+
Sbjct: 245 --PGLFEETLRNLREVSPTVYF-NVPKGFEMLVDALERD----AALRRRFFKRLRLLFYA 297
Query: 394 AAPLTPHVETFLRVVACAHV------LQGYGLTETC-AGTFVSLPNEMSMIGTVGPPVPN 446
A L V L+ +A G G TET TFV P + S G +G P P
Sbjct: 298 GAALPQDVWDRLQALAVRTTGERIPMTSGLGATETAPTATFVHWPTDRS--GVIGLPAPG 355
Query: 447 VDVCLESVP-EMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTG 500
++ L VP + EV VKG V GY++ +LT E +G++ G
Sbjct: 356 TELKL--VPNGGKL---------EVRVKGPNVTPGYWRDPELTAEAFDEEGFYRIG 400
|
Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559 |
| >gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Score = 84.6 bits (210), Expect = 2e-17
Identities = 86/302 (28%), Positives = 133/302 (44%), Gaps = 86/302 (28%)
Query: 222 NDICTIMYTSGTTGDPKGVMVSNENIVTFIA----GVKCLLESVNEKLTSEDVYVSYLPL 277
+D+ + Y+SGTTG PKGVM++++ +VT +A G E+ N S+DV + LP+
Sbjct: 179 DDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDG-----ENPNLYFHSDDVILCVLPM 233
Query: 278 AHIFDRAIEEVFISN---GAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLN 333
HI+ ++ V + GAAI ++ LLE I K TI VP +
Sbjct: 234 FHIY--SLNSVLLCGLRVGAAILIMPKFEIGALLELIQRHKVTIAPFVPPI--------- 282
Query: 334 QKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSG 393
+ IA SP+ +K +D +R++LSG
Sbjct: 283 ------------VLAIA----------------KSPVVEK--YDL------SSIRMVLSG 306
Query: 394 AAPLTPHVETFLRVVACAHVL-QGYGLTETCAGTFVSLPNEMSMI----------GTVGP 442
AAPL +E R VL QGYG+TE AG ++ M + G+ G
Sbjct: 307 AAPLGKELEDAFRAKLPNAVLGQGYGMTE--AGPVLA----MCLAFAKEPFPVKSGSCGT 360
Query: 443 PVPNVDVCLESVPEMEYDALSSTPR---GEVCVKGSTVFSGYYKREDLTKEVM-VDGWFH 498
V N ++ + ++ + +S PR GE+C++G + GY + T + DGW H
Sbjct: 361 VVRNAELKI-----VDPETGASLPRNQPGEICIRGPQIMKGYLNDPEATANTIDKDGWLH 415
Query: 499 TG 500
TG
Sbjct: 416 TG 417
|
Length = 537 |
| >gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 83.4 bits (207), Expect = 3e-17
Identities = 59/278 (21%), Positives = 99/278 (35%), Gaps = 77/278 (27%)
Query: 222 NDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIF 281
+D ++YTSG+TG PKGV++++ NI F+ +L + D + + +A F
Sbjct: 99 DDPAYVIYTSGSTGKPKGVVITHRNICNFLRAEGAILG-----IRPGDRVLQFASIA--F 151
Query: 282 DRAIEEVFIS--NGAAIGFWRGDVKLLLEDIGE----LKPTIFCAVPRVLDRIYSGLNQK 335
D +I E+F + G + +L LED+ E L+ T+ P +L +
Sbjct: 152 DVSILEIFTTLLAGGTL--VIPPEELRLEDLAEFLNRLRVTVAHLTPSLLALL------- 202
Query: 336 ISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAA 395
E P +R ++ G
Sbjct: 203 ----------------------------DPEDVP----------------SLRTLILGGE 218
Query: 396 PLTP-HVETFLRVVACAHVLQGYGLTETC--AGTFVSLPNEMSMIGTVGPPVPNVDVCLE 452
V+ + + +L YG TE A P + +G P+PN +
Sbjct: 219 ACPQALVDRWSKPR---RLLNTYGPTEATVTATASRLTPGKPV---NIGRPLPNYTCWVL 272
Query: 453 SVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKE 490
+ + GE+C+ G V GY R +LT E
Sbjct: 273 DPDLEPLVPIGAV--GELCIGGPGVARGYLNRPELTAE 308
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447 |
| >gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Score = 83.4 bits (206), Expect = 6e-17
Identities = 82/293 (27%), Positives = 127/293 (43%), Gaps = 59/293 (20%)
Query: 217 PVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLE---SVNEKLTSEDVYVS 273
PV K++D+ IMY+SGTTG KGV++++ N IA V+ + S E S++VY++
Sbjct: 193 PVIKQDDVAAIMYSSGTTGASKGVVLTHRN---LIAMVELFVRFEASQYEYPGSDNVYLA 249
Query: 274 YLPLAHIFDRAIEEV-FISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSG 331
LP+ HI+ ++ V +S G+ I R D +++ I K T F VP +L
Sbjct: 250 ALPMFHIYGLSLFVVGLLSLGSTIVVMRRFDASDMVKVIDRFKVTHFPVVPPIL------ 303
Query: 332 LNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLIL 391
L KK K V +KQ +
Sbjct: 304 -------MALTKKA-----------------KGVCGEV------LKSLKQ--------VS 325
Query: 392 SGAAPLTPH-VETFLRVVACAHVLQGYGLTETCA-GTFVSLPNEMSMIGTVGPPVPNVDV 449
GAAPL+ ++ F++ + +QGYG+TE+ A GT ++S +VG PN+
Sbjct: 326 CGAAPLSGKFIQDFVQTLPHVDFIQGYGMTESTAVGTRGFNTEKLSKYSSVGLLAPNMQA 385
Query: 450 CLESVPEMEYDA-LSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV-DGWFHTG 500
V + L GE+ ++G V GY T+ + DGW TG
Sbjct: 386 ---KVVDWSTGCLLPPGNCGELWIQGPGVMKGYLNNPKATQSTIDKDGWLRTG 435
|
Length = 560 |
| >gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Score = 82.7 bits (205), Expect = 1e-16
Identities = 78/322 (24%), Positives = 128/322 (39%), Gaps = 102/322 (31%)
Query: 212 KQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVY 271
K+ P K +D TI+++SG+ G+PKGVM+S+ NI ++ ++ + + N L ++DV
Sbjct: 772 KRLYGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNI---LSNIEQISDVFN--LRNDDVI 826
Query: 272 VS--------------YLPLAHIFDRAIEEVFISN---GAAIGFWRGDVKLLLEDIGELK 314
+S +LPL I+ V+ + I KL + + +
Sbjct: 827 LSSLPFFHSFGLTVTLWLPLL----EGIKVVYHPDPTDALGIA------KL----VAKHR 872
Query: 315 PTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKI 374
TI P L R+Y L+ + +
Sbjct: 873 ATILLGTPTFL-RLY----------------------------LR--------NKKLHPL 895
Query: 375 VFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEM 434
+F + RL+++GA L P V +L+GYG TET V+LP+ +
Sbjct: 896 MFASL--------RLVVAGAEKLKPEVADAFEEKFGIRILEGYGATETSPVASVNLPDVL 947
Query: 435 ---------SMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGE---VCVKGSTVFSGYY 482
S G+VG P+P V +V ++ + P GE + + G V GY
Sbjct: 948 AADFKRQTGSKEGSVGMPLPGV-----AVRIVDPETFEELPPGEDGLILIGGPQVMKGYL 1002
Query: 483 KREDLTKEVMVD----GWFHTG 500
+ T EV+ D GW+ TG
Sbjct: 1003 GDPEKTAEVIKDIDGIGWYVTG 1024
|
Length = 1146 |
| >gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA) | Back alignment and domain information |
|---|
Score = 81.5 bits (202), Expect = 2e-16
Identities = 63/295 (21%), Positives = 107/295 (36%), Gaps = 72/295 (24%)
Query: 222 NDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIF 281
+D+ I++TSG+TG PKGV +S+ N+ +F+ + LT DV+ + P + F
Sbjct: 97 DDLAYILFTSGSTGKPKGVQISHANLASFLDWMVEDF-----DLTEGDVFSNQAPFS--F 149
Query: 282 DRAIEEVF--ISNGAAIGFW------RGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLN 333
D ++ ++F +++GA + + D L E + E T++ +VP
Sbjct: 150 DLSVFDLFPALASGATL--YVIPKEQIADPLALFEFLKEHGLTVWVSVPSFASL------ 201
Query: 334 QKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSG 393
LL N +L+ F F G V L
Sbjct: 202 -------LLLSRELN---PESLPSLR---------------TF-----LFCGEV---LP- 227
Query: 394 AAPLTPHVETFLRVVACAHVLQGYGLTE-TCAGTFVSLPNEMSMIGT---VGPPVPNVDV 449
+ R A ++ YG TE T A T + E +G P P +
Sbjct: 228 ----KKLAKALRRRFPNARIINLYGPTEATVAVTAYEVTPEPLSRNEPLPIGYPKPGLRA 283
Query: 450 CLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVD----GWFHTG 500
+ + + + GE+ + G V GY + T + W+ TG
Sbjct: 284 ---LILDEDGRPVPPGEEGELVIAGPQVSPGYLNNPEKTAKAFFQDEGQRWYRTG 335
|
DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447 |
| >gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 81.9 bits (202), Expect = 2e-16
Identities = 92/482 (19%), Positives = 152/482 (31%), Gaps = 112/482 (23%)
Query: 34 DGFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVN 93
+ APIP + +F P + + TY E+ ++
Sbjct: 217 NALAAPIPLRLTIHLLFEEQAATTP------DAVALVRGGQQL---TYAELDARANRLAR 267
Query: 94 AIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSI 153
+ + GV I E ++ + A G VPL A + +I+ S ++
Sbjct: 268 LLISLGVGPGETVAILADRSLELVVALLAVLKAGAAYVPLDPLYPAERLAYILEDSRPTL 327
Query: 154 AFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQ 213
T HL R + +
Sbjct: 328 LL---------------TQAHL-------------RVDDVGLPGLALDDALSEIPDTDPI 359
Query: 214 FDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVS 273
+ + I+YTSG+TG PKGV + + + + L ++D ++
Sbjct: 360 PQA--LLGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARFG-----LDADDRVLA 412
Query: 274 YLPLAHIFDRAIEEVF--ISNGAAIGF----WRGDVKLLLEDIGELKPTIFCAVPRVLDR 327
L+ FD ++ E+F + GA + + D LLE + T+ VP +L
Sbjct: 413 LASLS--FDASVFEIFGALLEGARLVLAPALLQVDPAALLELLEAQGITVLLLVPLLLRL 470
Query: 328 IYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRV 387
+ + A+ D I S R+
Sbjct: 471 L------------------------------------LLAALAPDLI-------SPCERL 487
Query: 388 RLILSGAAPLTP-HVETFLRVVACAHVLQ-GYGLTE-TCAGTFVSLPNEMSMIGTVGPPV 444
R +LSG L V+ L++ A A L YG TE T + E+ +G PV
Sbjct: 488 RQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEATLDAPSFPISAELESRVPIGRPV 547
Query: 445 PNVDVC-----LESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV-DGWFH 498
N + L +P GE+ + G + GY R DLT E + +
Sbjct: 548 ANTQLYILDQGLRPLPLGV--------PGELYIAGLGLALGYLNRPDLTAERFIALRLYR 599
Query: 499 TG 500
TG
Sbjct: 600 TG 601
|
Length = 642 |
| >gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 78.0 bits (193), Expect = 2e-15
Identities = 43/215 (20%), Positives = 92/215 (42%), Gaps = 14/215 (6%)
Query: 68 IVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALG 127
++D G + T+ ++ +++ +R G+++ + N E+ C A G
Sbjct: 2 LIDADTGTEL--TFADLLKKALRLAKGLRKLGLKQGDVVALISPNSIEFPPVFLGCLAAG 59
Query: 128 LHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPE 187
+ + + S + F + ++ ++ + + ++ IV S
Sbjct: 60 GIVSAANPSYTPDELAHQLKISKPKLIFCDPDELDKVKEAAKELGPVVRIIVLDSAPD-- 117
Query: 188 QREEIEKYGLAVYSWDEFLQLGENKQFDLPVK-KKNDICTIMYTSGTTGDPKGVMVSNEN 246
L + E E++ P+ K+D ++Y+SGTTG PKGVM+S++N
Sbjct: 118 -------GVLRIEDLLEPRLGAEDEFRPTPLIDGKDDTAALLYSSGTTGLPKGVMLSHKN 170
Query: 247 IVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIF 281
I+ ++ V+ L+ +S DV +++LP H +
Sbjct: 171 IIANLSQVQDTLK--GNPDSSNDVVLTFLPFYHAY 203
|
This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487 |
| >gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 78.7 bits (194), Expect = 2e-15
Identities = 81/295 (27%), Positives = 125/295 (42%), Gaps = 71/295 (24%)
Query: 222 NDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNE---KLTSE--DVYVSYLP 276
+DI + YT GTTG KG M+++ N+V + V+ L + L E +V ++ LP
Sbjct: 207 DDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDGQPLMKEGQEVMIAPLP 266
Query: 277 LAHIFDRAI----------EEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLD 326
L HI+ V I+N I G +K EL F A+
Sbjct: 267 LYHIYAFTANCMCMMVSGNHNVLITNPRDIP---GFIK-------ELGKWRFSAL----- 311
Query: 327 RIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGR 386
GLN TLF +A + P + F +K + G
Sbjct: 312 ---LGLN-----------TLF-VA--------------LMDHPGFKDLDFSALKLTNSG- 341
Query: 387 VRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPN 446
G A + E + ++ C +++GYGLTET + E++ +GTVG PVP
Sbjct: 342 ------GTALVKATAERWEQLTGCT-IVEGYGLTETSPVASTNPYGELARLGTVGIPVPG 394
Query: 447 VDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTG 500
+ V + + + L RGE+C+KG V GY+++ + T E + +GWF TG
Sbjct: 395 TAL---KVIDDDGNELPLGERGELCIKGPQVMKGYWQQPEATAEALDAEGWFKTG 446
|
Length = 562 |
| >gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C) | Back alignment and domain information |
|---|
Score = 76.4 bits (189), Expect = 6e-15
Identities = 89/434 (20%), Positives = 147/434 (33%), Gaps = 116/434 (26%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGA 139
TY E+ + ++ +R GV + PE ++ + A G VPL A
Sbjct: 14 TYAELNERANRLARRLRARGVGPGDVVALLLERSPELVVAILAILKAGAAYVPLDPAYPA 73
Query: 140 GAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAV 199
+ F++ SG + +E ++ L +
Sbjct: 74 ERLAFMLEDSGARVLLTDES--------------------------LAPLARADQLPLVI 107
Query: 200 YSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIV------TFIAG 253
+ + P +D+ +MYTSG+TG PKGV V + +V +IA
Sbjct: 108 LEEELDAEDAGP---PAPAVDADDLAYVMYTSGSTGRPKGVAVPHRGVVRLVRNTNYIA- 163
Query: 254 VKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVF--ISNGAAIGFWRGDVKLLLEDIG 311
L +D ++ PL+ FD + E++ + NG +L+L D
Sbjct: 164 -----------LDPDDRFLQLSPLS--FDASTFEIWGALLNGG---------RLVLIDKE 201
Query: 312 ELK-PTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPI 370
L P + R++ Q ++ L LFN V+ P
Sbjct: 202 TLLDPD---RLARLIAE------QGVTV-LWLTAALFNQL--------------VDEDP- 236
Query: 371 ADKIVFDKVKQSFGGRVRLILSG--AAPLTPHVETFLRVVACAHVLQGYGLTE--TCAGT 426
++ G +R +L G HV L ++ GYG TE T +
Sbjct: 237 ----------EALAG-LRQLLVGGDVLSP-AHVRRVLAACPGLRLINGYGPTENTTFSTC 284
Query: 427 FVSLPNEMSMIGTV--GPPVPNVDVCLESVPEMEYDALSSTPR----GEVCVKGSTVFSG 480
V + + ++ G P+PN V + D GE+ V G + G
Sbjct: 285 HVITRLDEA-ADSIPIGRPIPNTTVYI-------LDEEGQPVPIGVPGELYVGGDGLALG 336
Query: 481 YYKREDLTKEVMVD 494
Y R +LT E V
Sbjct: 337 YLNRPELTAERFVP 350
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474 |
| >gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 76.5 bits (188), Expect = 8e-15
Identities = 73/297 (24%), Positives = 110/297 (37%), Gaps = 77/297 (25%)
Query: 218 VKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPL 277
D+ +MYTSGTT PKGVM S N+ K + + LT+ + + PL
Sbjct: 145 AVAPTDLVRLMYTSGTTDRPKGVMHSYGNLHW-----KSIDHVIALGLTASERLLVVGPL 199
Query: 278 AHI--FDRAIEEVFISNGAAIGFWRG---------DVKLLLEDIGELKPTIFCAVPRVLD 326
H+ FD G A+ W G D + +L I + T P +L
Sbjct: 200 YHVGAFDLP--------GIAV-LWVGGTLRIHREFDPEAVLAAIERHRLTCAWMAPVMLS 250
Query: 327 RIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGR 386
R+ P D+ D + GG
Sbjct: 251 RVL-------------------------------------TVPDRDRFDLDSLAWCIGGG 273
Query: 387 VRLILSGAAPLTPH--VETFLRVVACAHVLQGYGLTETCAG-TFVSLPNEMSMIGTVGPP 443
+ TP + F RV A + YGLTETC+G T + E+ IG+ G
Sbjct: 274 EK---------TPESRIRDFTRVFTRARYIDAYGLTETCSGDTLMEAGREIEKIGSTGRA 324
Query: 444 VPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG 500
+ +V++ + + L +GE+C++G V GY+K + T E WF +G
Sbjct: 325 LAHVEI---RIADGAGRWLPPNMKGEICMRGPKVTKGYWKDPEKTAEAFYGDWFRSG 378
|
Length = 497 |
| >gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 75.8 bits (187), Expect = 1e-14
Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 7/90 (7%)
Query: 413 VLQGYGLTETCAGTFVSLPNEMSM--IGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEV 470
V Q YG+TET + V+L E ++ +G+ G P+ ++ +E + + GE+
Sbjct: 281 VYQSYGMTETAS-QIVTLSPEDALTKLGSAGKPLFPCELKIEK----DGVVVPPFEEGEI 335
Query: 471 CVKGSTVFSGYYKREDLTKEVMVDGWFHTG 500
VKG V GY RED T+E DGWF TG
Sbjct: 336 VVKGPNVTKGYLNREDATRETFQDGWFKTG 365
|
Length = 483 |
| >gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 6e-14
Identities = 70/300 (23%), Positives = 104/300 (34%), Gaps = 85/300 (28%)
Query: 223 DICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHI-- 280
D+ +T GTTG PK S+ N V A + LL + DV ++ LPL H+
Sbjct: 3 DLAAYFHTGGTTGAPKLARHSHRNEVA-NAWMAALLSGLGP----GDVLLNGLPLFHVGG 57
Query: 281 --------FDRAIEEVFISNGAAIGFWRGD--VKLLLEDIGELKPTIFCAVPRVLDRIYS 330
R V + +R V + + + T+ AVP VL
Sbjct: 58 AIVTGLAPLARGATVVLPT----PSGFRNPAVVANFWKIVERYRVTLLSAVPTVL----- 108
Query: 331 GLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLI 390
LL+ P+ D + +R
Sbjct: 109 --------AALLQ------------------------VPLGDADI---------SSLRYA 127
Query: 391 LSGAAPLTPHV-ETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVP--NV 447
L+GAAPL V F V V++GYG+TE + ++ G+VG +P V
Sbjct: 128 LTGAAPLPVEVARRFEAVTGV-PVVEGYGMTEGTGVSAINPRGGPRRPGSVGLRLPYTRV 186
Query: 448 DVCLESVPEMEYDALSSTPR-------GEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG 500
V + DA + R G + ++G VF GY + DGW +TG
Sbjct: 187 RV-------AKLDAGGALGRDCAPGEVGVLAIRGPNVFPGYLNDAHNAGARLEDGWLNTG 239
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359 |
| >gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 6e-14
Identities = 68/301 (22%), Positives = 115/301 (38%), Gaps = 56/301 (18%)
Query: 203 DEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVN 262
+ + ++ L V + +DI +YTSGTTG PKGVM + + +TF
Sbjct: 72 QDLEHILDDSGAALLVTEADDIAYWLYTSGTTGKPKGVMHRHRDPLTFAE----AFAREL 127
Query: 263 EKLTSEDVYVSYLPLAHIFDRAIEEVF-ISNGAAIGFWRG--DVKLLLEDIGELKPTIFC 319
L D S L + +F + +GA+ G + +L+ + +PT+
Sbjct: 128 LGLQPGDRIFSSSKLFFAYGLGNSLLFPLFSGASAVLLPGWPTPEAVLDLLARHRPTVLF 187
Query: 320 AVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKV 379
VP + Y L + SG + F +++ EA P + ++
Sbjct: 188 GVPAL----YRAL---LESGAG---------SAPLFRSVRLCVSAGEALPAG---LAERW 228
Query: 380 KQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGT 439
++ G + L G G TE F+S + GT
Sbjct: 229 AEATGIEI--------------------------LDGIGSTEV-LHIFISNRPGAARPGT 261
Query: 440 VGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHT 499
G PVP + L V E + + T G++ V+G ++ GY+ + T+ + DGW T
Sbjct: 262 TGRPVPGYEARL--VDESGREVPAGTV-GDLWVRGPSLAPGYWNLPEKTQRTLRDGWLRT 318
Query: 500 G 500
G
Sbjct: 319 G 319
|
This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436 |
| >gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Score = 73.4 bits (181), Expect = 9e-14
Identities = 72/296 (24%), Positives = 116/296 (39%), Gaps = 76/296 (25%)
Query: 222 NDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAH-- 279
+ I ++TSG+TG PK V+ ++ + A + L ++ V V +LP H
Sbjct: 209 DTIAKFLFTSGSTGLPKAVINTHRMLC---ANQQMLAQTFPFLAEEPPVLVDWLPWNHTF 265
Query: 280 ----IFDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQK 335
+ NG + I + KPT P
Sbjct: 266 GGNHNLGIVLY-----NGGTL------------YIDDGKPT-----P------------- 290
Query: 336 ISSGGLLKKTLFN---IAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILS 392
G +TL N I+ + F N+ KG + + + D +++ F R++L+
Sbjct: 291 ----GGFDETLRNLREISPTVYF-NVPKGWEMLVPALERD----AALRRRFFSRLKLLFY 341
Query: 393 GAAPLTPHVETFLRVVACAHV------LQGYGLTETC-AGTFVSLPNEMSMIGTVGPPVP 445
A L+ V L VA A + G G+TET + TF + P + G +G P P
Sbjct: 342 AGAALSQDVWDRLDRVAEATCGERIRMMTGLGMTETAPSATFTTGPLSRA--GNIGLPAP 399
Query: 446 NVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVD-GWFHTG 500
+V L VP + EV VKG V GY++ +LT E + G++ +G
Sbjct: 400 GCEVKL--VP---VGG-----KLEVRVKGPNVTPGYWRAPELTAEAFDEEGYYRSG 445
|
Length = 614 |
| >gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Score = 72.7 bits (178), Expect = 2e-13
Identities = 78/308 (25%), Positives = 134/308 (43%), Gaps = 54/308 (17%)
Query: 201 SWDEFLQLGE--NKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLL 258
+W E L+ + D + D+C + ++SGTTG KGVM+++ N+V A + L
Sbjct: 161 NWKELLEAADRAGDTSDNEEILQTDLCALPFSSGTTGISKGVMLTHRNLV---ANLCSSL 217
Query: 259 ESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIF 318
SV ++ + V + +P HI+ G R K+++ EL+ F
Sbjct: 218 FSVGPEMIGQVVTLGLIPFFHIYGIT--------GICCATLRNKGKVVVMSRFELR--TF 267
Query: 319 CAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDK 378
+ + + Q++S ++ + N+ +PI ++ K
Sbjct: 268 ---------LNALITQEVSFAPIVPPIILNLV----------------KNPIVEEFDLSK 302
Query: 379 VKQSFGGRVRLILSGAAPLTPHVET-FLRVVACAHVLQGYGLTE-TCAGTFVSLPNEMSM 436
+K ++ I++ AAPL P + T F V + YGLTE +C P +
Sbjct: 303 LK------LQAIMTAAAPLAPELLTAFEAKFPGVQVQEAYGLTEHSCITLTHGDPEKGHG 356
Query: 437 IG---TVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYY-KREDLTKEVM 492
I +VG +PN++V P+ +TP GE+CV+ V GYY +E+ + +
Sbjct: 357 IAKKNSVGFILPNLEVKFID-PDTGRSLPKNTP-GELCVRSQCVMQGYYNNKEETDRTID 414
Query: 493 VDGWFHTG 500
DGW HTG
Sbjct: 415 EDGWLHTG 422
|
Length = 546 |
| >gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated | Back alignment and domain information |
|---|
Score = 72.1 bits (177), Expect = 2e-13
Identities = 53/203 (26%), Positives = 85/203 (41%), Gaps = 13/203 (6%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGA 139
TY + + V+ + + +R G+ + IY E + M G VP+ L A
Sbjct: 27 TYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAGGVFVPINPLLKA 86
Query: 140 GAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAV 199
V I+ V + V + ++L L+T++ P E G
Sbjct: 87 EQVAHILADCNVRL-LVTSSERLDLLHPALPGCHDLRTLIIVGD--PAHASEGHP-GEEP 142
Query: 200 YSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLE 259
SW + L LG+ +D+ I+YTSG+TG PKGV++S+ N+V V LE
Sbjct: 143 ASWPKLLALGD--ADPPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYLE 200
Query: 260 SVNEKLTSEDVYVSYLPLAHIFD 282
+D ++ LPL+ FD
Sbjct: 201 -----NRPDDRLLAVLPLS--FD 216
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517 |
| >gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 4e-13
Identities = 35/154 (22%), Positives = 57/154 (37%), Gaps = 46/154 (29%)
Query: 385 GRVRLILSGAAPLTPHV-ETFLRVVA----CAHVLQ-GYGLTETCAGTFVSL----PNEM 434
+R I++ + FL ++A A ++ +G++ETC+G S +
Sbjct: 289 SSLRYIINAGEAVVAKTIRRFLELLAPYGLPADAIRPAFGMSETCSGVTYSRGFRTGPDT 348
Query: 435 SMIGT----------------------VGPPVPNVDV-----CLESVPEMEYDALSSTPR 467
+ +G P+P V + +PE E
Sbjct: 349 GGVLVDSLTGPLRFAAADHPEAVTFVELGRPIPGVAIRIVDEDGALLPEGE--------V 400
Query: 468 GEVCVKGSTVFSGYYKREDLTKEVMV-DGWFHTG 500
G + V+G TV SGYY+ + E DGWF TG
Sbjct: 401 GRLQVRGPTVTSGYYRNPEANAEAFTEDGWFRTG 434
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560 |
| >gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 6e-13
Identities = 95/439 (21%), Positives = 150/439 (34%), Gaps = 129/439 (29%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKC-GIYGVNCPEWIIGMEACNALGLHCVPLYDTLG 138
+Y++++ V + +R GV K + N +W+I AC G+ C+P+
Sbjct: 4 SYQQLWQEVDLLAEQLRALGV----KRIALALDNSIDWVIADLACLQAGIVCIPIPHFFS 59
Query: 139 AGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLA 198
A + ++ +G ++S A
Sbjct: 60 AQQTQHLLNDAGAD------------------------LLISDDP--DAASALHT--PFA 91
Query: 199 VYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLL 258
D ++ L + PV+ I YTSG+TG PKGV +S + T + L
Sbjct: 92 TLGEDLYIALRPSAN---PVELPAGTAKITYTSGSTGQPKGVCLSAAALETV---AQSLA 145
Query: 259 ESVNEKLTSEDVYVSYLPLAHIFDRAI---------EEVFISNGAAIGFWRG----DVKL 305
E++ + ++ LPLA + + V + A +G G D
Sbjct: 146 EAIAI--LEPERHLCLLPLATLLENIAGVYAPLLMGATVILVPLAELGL-SGSSGLDPAQ 202
Query: 306 LLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHV 365
+ + +P VP++L L + G L + S +F
Sbjct: 203 FVAALSRWQPHSLILVPQLL----MALVAAVEQGPLPPE-------SLRF---------- 241
Query: 366 EASPIADKIVFDKVKQSFGGRV--RLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETC 423
+A V G RV L+ A P V +GYGL+E C
Sbjct: 242 ----VA-------VG---GARVSPSLLQRARALGLP-------------VYEGYGLSE-C 273
Query: 424 AGTFVSL--PNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGY 481
A + VSL P G+VG P+P+V V S GE+ V+GS GY
Sbjct: 274 A-SVVSLNTPGA-DRPGSVGKPLPHVQV-------------SIANDGEILVRGSL-MLGY 317
Query: 482 YKREDLTKEVMVDGWFHTG 500
T D W+ TG
Sbjct: 318 LGEPPAT-----DDWWATG 331
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448 |
| >gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 5e-12
Identities = 39/119 (32%), Positives = 54/119 (45%), Gaps = 7/119 (5%)
Query: 385 GRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPV 444
RL++SG+A L V L + ++ YG+TET E G VG P+
Sbjct: 241 RGARLLVSGSAALPVPVFDRLAALTGHRPVERYGMTETLITLSTRADGERRP-GWVGLPL 299
Query: 445 PNVDVCL--ESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV-DGWFHTG 500
V+ L E + +D + GE+ V+G T+F GY R D T DGWF TG
Sbjct: 300 AGVETRLVDEDGGPVPHDGETV---GELQVRGPTLFDGYLNRPDATAAAFTADGWFRTG 355
|
Length = 471 |
| >gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 6e-12
Identities = 37/120 (30%), Positives = 53/120 (44%), Gaps = 13/120 (10%)
Query: 388 RLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNV 447
+++ G A L P V L+ + +GYGLTET T + P+ +G PV
Sbjct: 202 KVVGGGGAALPPAVAERLKALTGLLYEEGYGLTETHTCTHFNPPDRPKP-QCLGIPVFGT 260
Query: 448 D--VC-LESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV----DGWFHTG 500
D V E+ E L GE+ V+G VF GY+ R + T E + +F TG
Sbjct: 261 DARVIDPETGEE-----LPPGEEGEIVVRGPQVFKGYWNRPEATAESFIELDGKRFFRTG 315
|
The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430 |
| >gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 6e-12
Identities = 74/312 (23%), Positives = 107/312 (34%), Gaps = 110/312 (35%)
Query: 229 YTSGTTGDPKGV--------MVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHI 280
YTSGTTG+PKGV + + NI+ + + VY+ LP+ H
Sbjct: 189 YTSGTTGNPKGVVYHHRGAYLNALSNILAW-------------GMPKHPVYLWTLPMFHC 235
Query: 281 ----FDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKI 336
F + G + + D KL+ + I E T +C P VL
Sbjct: 236 NGWCFPWTVA---ARAGTNVCLRKVDPKLIFDLIREHGVTHYCGAPIVLS---------- 282
Query: 337 SSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAP 396
L N +P + D V +++GAAP
Sbjct: 283 --------ALIN-------------------APAEWRAGID-------HPVHAMVAGAAP 308
Query: 397 LTPHVETFLRVVACA-----HVLQGYGLTET------CA--GTFVSLPNE-----MSMIG 438
P V+A + YGLTET CA + +LP + + G
Sbjct: 309 --P-----AAVIAKMEEIGFDLTHVYGLTETYGPATVCAWQPEWDALPLDERAQLKARQG 361
Query: 439 TVGPPVPNVDVCLESVPEMEYDALSSTPR-----GEVCVKGSTVFSGYYKREDLTKEVMV 493
P E V ++ D + P GE+ +G+ V GY K T+E
Sbjct: 362 VRYPL-------QEGVTVLDPDTMQPVPADGETIGEIMFRGNIVMKGYLKNPKATEEAFA 414
Query: 494 DGWFHTG-MGVW 504
GWFHTG + V
Sbjct: 415 GGWFHTGDLAVL 426
|
Length = 545 |
| >gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 1e-11
Identities = 66/296 (22%), Positives = 111/296 (37%), Gaps = 78/296 (26%)
Query: 223 DICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282
D+ I+YTSG+TG+PKGVM+S+ N+ + LE LT +D ++ LP + FD
Sbjct: 3 DLAAIIYTSGSTGEPKGVMLSHRNLTAGARSIAQYLE-----LTEDDRILAVLPFS--FD 55
Query: 283 ----------RAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGL 332
R + + + A DV L+ + + + T F VP ++
Sbjct: 56 YGLSQLLTAFRVGGTLVLESRFAFP---RDV---LKHLAKERITGFAGVP----TTWA-- 103
Query: 333 NQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILS 392
LL+ F +L+ L +
Sbjct: 104 -------QLLRLDPL---AREDFPSLR----------------------------YLTNA 125
Query: 393 GAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEM--SMIGTVGPPVPNVDVC 450
G A + R A + YGLTE T+ LP E ++G +PNV++
Sbjct: 126 GGALPAKTILQLRRAFPDAKLFSMYGLTEAFRSTY--LPPEELDRRPDSIGKAIPNVELW 183
Query: 451 LESVPEMEYDALSSTPR--GEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGMGVW 504
+ ++ D P GE+ +G+ V GY+ + T E + G + ++
Sbjct: 184 V-----VDEDGNRCAPGEVGELVHRGANVMKGYWNDPEATAERLRPGPLPGEIVLY 234
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350 |
| >gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 2e-11
Identities = 68/260 (26%), Positives = 107/260 (41%), Gaps = 52/260 (20%)
Query: 48 DVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCG 107
D F V R P+ L R +A +Y T++++ D V ++ + GV+ + G
Sbjct: 22 DAFDATVARFPDREALVVRH----QALRY---TWRQLADAVDRLARGLLALGVQPGDRVG 74
Query: 108 IYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVS-------------IA 154
I+ NC EW++ A +G V + A +E+ + SGV A
Sbjct: 75 IWAPNCAEWLLTQFATARIGAILVNINPAYRASELEYALGQSGVRWVICADAFKTSDYHA 134
Query: 155 FVEEKKIPEMLKTFPKTTE-----HLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLG 209
++E +P + + P L+ +VS + P G W E G
Sbjct: 135 MLQEL-LPGLAEGQPGALACERLPELRGVVSLAPAPPP--------GFLA--WHELQARG 183
Query: 210 EN-KQFDLPVKK----KNDICTIMYTSGTTGDPKGVMVSNENIVT---FIAGVKCLLESV 261
E + L ++ ++D I YTSGTTG PKG +S+ NI+ F+A ES+
Sbjct: 184 ETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVA------ESL 237
Query: 262 NEKLTSEDVYVSYLPLAHIF 281
LT D +PL H F
Sbjct: 238 G--LTEHDRLCVPVPLYHCF 255
|
Length = 558 |
| >gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 2e-11
Identities = 63/313 (20%), Positives = 107/313 (34%), Gaps = 77/313 (24%)
Query: 200 YSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLE 259
+S ++ L +LP D+ + GTTG PK + ++ + ++ + E
Sbjct: 122 FSGFDYAALARELLEELP-----DVALFQLSGGTTGLPKLIPRTHND---YLYSARASAE 173
Query: 260 SVNEKLTSEDVYVSYLPLAHIFDRA---IEEVFISNGAAIGFWRGDVKLLLEDIGELKPT 316
+ L VY++ LP AH F + + ++ G + + I K T
Sbjct: 174 AC--GLDPGTVYLAVLPAAHNFTLSSPGLLGALLAGGTVVLHHPPSPDVAFPLIEREKVT 231
Query: 317 IFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVF 376
VP +L+ +EA+
Sbjct: 232 HTALVPALLNLW------------------------------------LEAAEWDQ---A 252
Query: 377 DKVKQSFGGRVRLILSGAAPLTPHV-ETFLRVVACAHVLQGYGLTE-TCAGTFVSLPNEM 434
D +R+I G APL+P + + C + Q +G+ E T + P ++
Sbjct: 253 DL------SSLRVIQVGGAPLSPELARRVEERLGCP-LQQVFGMAEGLVNYTRLDDPPDV 305
Query: 435 SMIGTVGPPVPN------VDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLT 488
M T G P+ VD E VP E GE+ +G GYY+ +
Sbjct: 306 IM-RTQGRPISPADEIRIVDDQGEPVPPGEV--------GELLTRGPYTIRGYYRAPEHN 356
Query: 489 KEVMV-DGWFHTG 500
DG++ TG
Sbjct: 357 ARAFTDDGFYRTG 369
|
2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483 |
| >gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Score = 65.0 bits (158), Expect = 4e-11
Identities = 70/298 (23%), Positives = 115/298 (38%), Gaps = 56/298 (18%)
Query: 209 GENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSE 268
G + P +D+ + YT GTTG PKG M+++ N+ + ++ + + T
Sbjct: 179 GAAAPAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIYD--VWGKPSRATRG 236
Query: 269 DVY--VSYLPLAHIFDRAIEEVFIS---NGAAIGF-WRGDVKLLLEDIGELKPTIFCAVP 322
DV + LPL HI+ A+ + + G I R DV + DI E + T+F VP
Sbjct: 237 DVERVICVLPLFHIY--ALTVILLRSLRRGDLISLHQRFDVAAVFRDIEEKRATVFPGVP 294
Query: 323 RVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQS 382
T++ IA + P +K +
Sbjct: 295 ----------------------TMW-IA--------------LANDPSLEKRDLSSLATI 317
Query: 383 FGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGP 442
G APL V F + G+G+TETC+ P G++G
Sbjct: 318 GSG--------GAPLPVEVANFFERKTGLKLKSGWGMTETCSPGTGHPPEGPDKPGSIGL 369
Query: 443 PVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG 500
+P +++ + S+ + L GE+ ++G V GY+ R + + E V F TG
Sbjct: 370 MLPGIELDVVSLDDPT-KVLPPGEVGELRIRGPNVTRGYWNRPEESAEAFVGDRFLTG 426
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541 |
| >gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Score = 64.5 bits (158), Expect = 4e-11
Identities = 45/123 (36%), Positives = 62/123 (50%), Gaps = 18/123 (14%)
Query: 386 RVRLILSGAAPLTP--HVETFLRVVACAH-VLQGYGLTETCAGTFVSLPNEMSMI-GTVG 441
+RL +SG+APL H E R H +L+ YG+TET T S P + GTVG
Sbjct: 270 HMRLFISGSAPLLAETHREFQERT---GHAILERYGMTETNMNT--SNPYDGERRAGTVG 324
Query: 442 PPVPNVDVCLESVPEMEYDALSSTPRGEVC---VKGSTVFSGYYKREDLTKEVM-VDGWF 497
P+P V S+ + + + P GE+ VKG VF GY++ + T E DG+F
Sbjct: 325 FPLPGV-----SLRVTDPETGAELPPGEIGMIEVKGPNVFKGYWRMPEKTAEEFRADGFF 379
Query: 498 HTG 500
TG
Sbjct: 380 ITG 382
|
Length = 504 |
| >gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 1e-10
Identities = 63/299 (21%), Positives = 102/299 (34%), Gaps = 89/299 (29%)
Query: 223 DICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVS--------- 273
D + +TSGTTG PK V+ ++ + + L+ L +D++ +
Sbjct: 82 DPALLYFTSGTTGLPKMVLHTHSYPLGHLVTGAYWLD-----LRPDDLHWTIADPGWAKG 136
Query: 274 -----YLPLAHIFDRAIEEVFISNGAAIGFWRG---DVKLLLEDIGELKPTIFCAVPRVL 325
+ P GAA+ + G D + LE + T FCA P
Sbjct: 137 AWSSLFAPWLL-------------GAAVFVYHGRRFDAERTLELLERYGVTTFCAPPTAY 183
Query: 326 DRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGG 385
+ L Q +SS Y F
Sbjct: 184 RML---LQQDLSS--------------YDF-----------------------------S 197
Query: 386 RVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVP 445
+R ++S PL P V + R + GYG TET + P G++G P P
Sbjct: 198 HLRHVVSAGEPLNPEVIDWWRAATGLPIRDGYGQTETGL-LVANFPGMEVKPGSMGRPAP 256
Query: 446 NVDVCLESVPEMEYDALSSTPRGEVCVKGST----VFSGYYKREDLTKEVMVDGWFHTG 500
V ++ + E + L G++ V+ +F GY K + T+ + W+ TG
Sbjct: 257 GYRV---AIIDDEGNELPPGEEGDIAVRVKPRPPGLFRGYLKDPEKTEATIRGDWYLTG 312
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430 |
| >gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 1e-10
Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 223 DICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHI 280
D I+YTSGTTG PKGV++++ A L + L +DV ++ LPL HI
Sbjct: 82 DTAAILYTSGTTGPPKGVLLTHAQ--LLFAAR---LAARLLGLRPDDVLLTPLPLFHI 134
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421 |
| >gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 1e-10
Identities = 92/409 (22%), Positives = 148/409 (36%), Gaps = 100/409 (24%)
Query: 120 MEACNALGLHCVPLYDTLGAGAVEFIICHSGVS-IAFVEEKKIPEMLKTFPKTTEHLKTI 178
M A + +G +P L A + + I +G+ I + E +PE + +
Sbjct: 89 MLALHKIGAIAIPATHMLTAKDIVYRIEAAGIKMIVCIGEDGVPEHIDEAAPECGSPTLL 148
Query: 179 VSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLP------VKKKNDICTIMYTSG 232
V V E W +F + EN D +DI + +TSG
Sbjct: 149 V---LVGDPVPE----------GWIDFDKEIENASPDFERPTGNDATCNDDILLVYFTSG 195
Query: 233 TTGDPKGVMVSNEN------IVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIE 286
TTG PK MV +++ IVT A ++ LT D ++ + I
Sbjct: 196 TTGMPK--MVEHDHTYPLGHIVT--AKYWQNVKEGGLHLTVADTGWGKAVWGKLYGQWIA 251
Query: 287 E--VFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKK 344
VF+ + + + D K LLE I + T FCA P + R + + +S
Sbjct: 252 GAAVFVYD-----YDKFDPKNLLEKIEKYGVTTFCAPPTIY-RFL--IKEDLSK------ 297
Query: 345 TLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETF 404
++L A + VF+ K+ G ++
Sbjct: 298 -----------YDLSSLRYCTTAGEPLNPEVFNTFKEKTGIKLM---------------- 330
Query: 405 LRVVACAHVLQGYGLTET--CAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDAL 462
+G+G TET TF P G++G P P D+ + ++ D
Sbjct: 331 ----------EGFGQTETTLTIATF---PWMEPKPGSMGKPSPGYDIDI-----IDPDGK 372
Query: 463 SSTP--RGEVCVKGST-----VFSGYYKREDLTKEVMVDGWFHTGMGVW 504
S GE+ ++ S +F GYY+ + T EV DG++HTG W
Sbjct: 373 SCEVGEEGEIVIRTSDGKPLGLFMGYYRDPERTAEVWHDGYYHTGDTAW 421
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537 |
| >gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 2e-10
Identities = 34/125 (27%), Positives = 51/125 (40%), Gaps = 24/125 (19%)
Query: 386 RVRLILSGAAPLTPHVETFLR--VVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPP 443
+R + P R V +++GYG+TET P + + G+ G P
Sbjct: 197 PLRFVFGAPLPAAIWPAFEERFGVK----LVEGYGMTETGVPIIA--PGDPAPPGSCGRP 250
Query: 444 VPNVDVCL-----ESVPEMEYDALSSTPRGEVCVKGS---TVFSGYYKREDLTKEVMVDG 495
P V+V + VP E GE+ V+ +F GYY + T + +G
Sbjct: 251 RPGVEVRIVDEDGREVPPGE--------VGELVVRPRRPWAMFKGYYGMPEATAKAWRNG 302
Query: 496 WFHTG 500
WFHTG
Sbjct: 303 WFHTG 307
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421 |
| >gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 2e-10
Identities = 94/453 (20%), Positives = 149/453 (32%), Gaps = 94/453 (20%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGA 139
TY E+ V + N + + GV N PE + A G+ P+ L
Sbjct: 60 TYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFALWGGEAAGIAN-PINPLLEP 118
Query: 140 GAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTT------------EHLKTIVSFS---KV 184
+ ++ +G + L FP T L+T+V +
Sbjct: 119 EQIAELLRAAGAKVLVT--------LGPFPGTDIWQKVAEVLAALPELRTVVEVDLARYL 170
Query: 185 KPEQREEI----EKYGLAVYSWDEFL-QLGENKQFDLPVKKKNDICTIMYTSGTTGDPKG 239
+R + K + +D L + ++ F +D+ +T GTTG PK
Sbjct: 171 PGPKRLAVPLIRRKAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKL 230
Query: 240 VMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDR-AIEEVFISNGAAIGF 298
++ N V LL L D LPL H+ ++ GA +
Sbjct: 231 AQHTHGNEVANAWLGALLL-----GLGPGDTVFCGLPLFHVNALLVTGLAPLARGAHVVL 285
Query: 299 -----WRGD--VKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAY 351
+RG + + + + VP V Y+ L Q
Sbjct: 286 ATPQGYRGPGVIANFWKIVERYRINFLSGVPTV----YAALLQV---------------- 325
Query: 352 SYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHV-ETFLRVVAC 410
P+ + +R L GAAPL V F
Sbjct: 326 -----------------PVDGHDI---------SSLRYALCGAAPLPVEVFRRFEAATG- 358
Query: 411 AHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEV 470
+++GYGLTE + V+ P+ IG+VG +P V + + + L EV
Sbjct: 359 VRIVEGYGLTEATCVSSVNPPDGERRIGSVGLRLPYQRVRVVILDD-AGRYLRDCAVDEV 417
Query: 471 ---CVKGSTVFSGYYKREDLTKEVMVDGWFHTG 500
C+ G VFSGY + + DGW +TG
Sbjct: 418 GVLCIAGPNVFSGYLEAAHNKGLWLEDGWLNTG 450
|
Length = 632 |
| >gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 3e-10
Identities = 25/58 (43%), Positives = 38/58 (65%), Gaps = 5/58 (8%)
Query: 222 NDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAH 279
+DI + YTSG+TG PKGVMV++ N+ +A ++ + + L +DV VS+LPL H
Sbjct: 148 DDIAFLQYTSGSTGAPKGVMVTHGNL---LANLRAIARAF--GLDPDDVGVSWLPLYH 200
|
FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547 |
| >gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 3e-10
Identities = 71/311 (22%), Positives = 110/311 (35%), Gaps = 68/311 (21%)
Query: 202 WDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESV 261
W + L + + V +D+ +++TSGT+GDPK V ++ + AGV +
Sbjct: 132 WADELAAHRDAEPPFRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVA--SAGV-----ML 184
Query: 262 NEK--LTSEDV-YVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIF 318
++ L +DV YVS +PL F SN A + W +
Sbjct: 185 AQRFGLGPDDVCYVS-MPL-----------FHSN-AVMAGW--------------AVALA 217
Query: 319 CAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDK 378
L R +S +SG L + Y + + K +V A+P +
Sbjct: 218 AGASIALRRKFS------ASGFLPDVRRYGATY---ANYVGKPLSYVLATPERPDDADNP 268
Query: 379 VKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIG 438
++ +G AP + F R C V+ G+G TE P+ G
Sbjct: 269 LRIVYGNE-------GAP--GDIARFARRFGC-VVVDGFGSTEGGVA-ITRTPDTPP--G 315
Query: 439 TVGPPVPNVDV----CLESVPEMEYDALSSTPR----GE-VCVKGSTVFSGYYKREDLTK 489
+GP P V + P E GE V G F GYY +
Sbjct: 316 ALGPLPPGVAIVDPDTGTECPPAEDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEADA 375
Query: 490 EVMVDGWFHTG 500
E M G + +G
Sbjct: 376 ERMRGGVYWSG 386
|
Length = 529 |
| >gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 6e-10
Identities = 52/217 (23%), Positives = 88/217 (40%), Gaps = 26/217 (11%)
Query: 80 TYKEVYDLVIKVVNAI-RTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLG 138
+Y+E+ + ++ + + CGV + + +Y N P+++I A VP+
Sbjct: 37 SYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAILRANAVVVPVNPMNR 96
Query: 139 AGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTT-EHLKTIV-SFSKVKPEQ-------- 188
+ + SG +A V + P++ H+ IV +S P +
Sbjct: 97 EEELAHYVTDSGARVAIVGSELAPKVAPAVGNLRLRHV--IVAQYSDYLPAEPEIAVPAW 154
Query: 189 -REEIEKYGLA---VYSWDEFLQLGENKQFDLPVK-KKNDICTIMYTSGTTGDPKGVMVS 243
R E LA V +W E L G P +D+ + YTSGTTG PKG M +
Sbjct: 155 LRAEPPLQALAPGGVVAWKEALAAGLAP---PPHTAGPDDLAVLPYTSGTTGVPKGCMHT 211
Query: 244 NENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHI 280
+ ++ G + T E V ++ LPL H+
Sbjct: 212 HRTVMANAVGS-----VLWSNSTPESVVLAVLPLFHV 243
|
Length = 546 |
| >gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 2e-09
Identities = 47/202 (23%), Positives = 81/202 (40%), Gaps = 35/202 (17%)
Query: 79 KTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLG 138
T+ E+++ V+ V + GV++ + + N E I+ + A LG V L L
Sbjct: 28 VTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQLGAVAVLLNTRLS 87
Query: 139 AGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLA 198
+ + + + V ++ E K E+
Sbjct: 88 REELLWQLDDAEVKCLITDD------------DFEAKLIPGISVKFAELMNGPKEEA--- 132
Query: 199 VYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLL 258
E + +FDL +++ TIMYTSGTTG PKGV+ + N + + V L
Sbjct: 133 -----EIQE-----EFDL-----DEVATIMYTSGTTGKPKGVIQTYGN--HWWSAVGSAL 175
Query: 259 ESVNEKLTSEDVYVSYLPLAHI 280
N LT +D +++ +P+ HI
Sbjct: 176 ---NLGLTEDDCWLAAVPIFHI 194
|
Length = 483 |
| >gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA) | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 2e-09
Identities = 23/62 (37%), Positives = 43/62 (69%), Gaps = 7/62 (11%)
Query: 219 KKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAG-VKCLLESVNEKLTSEDVYVSYLPL 277
+DI I ++SG+TG+PKGV+++++N++T I ++ ++TSEDV++S++PL
Sbjct: 103 SLPDDIAFIQFSSGSTGEPKGVILTHKNLLTNIEAIIEAA------EITSEDVFLSWMPL 156
Query: 278 AH 279
H
Sbjct: 157 TH 158
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499 |
| >gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase | Back alignment and domain information |
|---|
Score = 59.1 bits (144), Expect = 2e-09
Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 17/109 (15%)
Query: 222 NDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKL--TSEDVYVSYLPLAH 279
+D+ ++YTSG+TG PKGV VS+ +V F L S+ + + D ++ ++
Sbjct: 93 DDLAYVIYTSGSTGKPKGVEVSHRALVNF-------LLSMARRPGLGASDRLLAVTTIS- 144
Query: 280 IFDRAIEEVFI--SNGAAI----GFWRGDVKLLLEDIGELKPTIFCAVP 322
FD ++ E+ + +GA + D + L I + + TI A P
Sbjct: 145 -FDISVLELLLPLLSGATVVIASAETVRDPERLARLIADERITIMQATP 192
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438 |
| >gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 2e-09
Identities = 71/292 (24%), Positives = 105/292 (35%), Gaps = 69/292 (23%)
Query: 223 DICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPL--AHI 280
D IM+T GTTG PK V ++ NI + + + L+ D V+ +PL H
Sbjct: 177 DDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGYR-----LSPRDATVAVMPLYHGHG 231
Query: 281 FDRAIEEVFISNGAAIGFWRG--DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISS 338
A+ S GA + RG +DI + T + AVP +
Sbjct: 232 LIAALLATLASGGAVLLPARGRFSAHTFWDDIKAVGATWYTAVPTI-------------- 277
Query: 339 GGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGR----VRLILSGA 394
H +I+ ++ GR +R I S +
Sbjct: 278 -------------------------H--------QILLERAATEPSGRKPAALRFIRSCS 304
Query: 395 APLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIG-TVGPPVPNVDVCLES 453
APLT L+ A V+ +G+TE T ++ IG T P V V +
Sbjct: 305 APLTAETAQALQTEFAAPVVCAFGMTEA---THQVTTTQIEGIGQTENPVVSTGLVGRST 361
Query: 454 VPEMEY---DALSSTPR--GEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG 500
++ D L GEV ++G+TV GY +T DGW TG
Sbjct: 362 GAQIRIVGSDGLPLPAGAVGEVWLRGTTVVRGYLGDPTITAANFTDGWLRTG 413
|
Length = 534 |
| >gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 59.1 bits (144), Expect = 3e-09
Identities = 58/237 (24%), Positives = 90/237 (37%), Gaps = 63/237 (26%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCV---PLYDT 136
TY+E + V + + G+E+ + GI+ N PEW++ A +G V P Y
Sbjct: 45 TYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLTQFATAKIGAILVTINPAYRL 104
Query: 137 LGAGAVEFIICHSGVS-IAFVEEKK-----------IPEM---------LKTFPKTTEHL 175
+E+ + SG + + K PE+ P L
Sbjct: 105 ---SELEYALNQSGCKALIAADGFKDSDYVAMLYELAPELATCEPGQLQSARLP----EL 157
Query: 176 KTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGEN--------KQFDLPVKKKNDICTI 227
+ ++ K + ++DE L LG +Q L +D I
Sbjct: 158 RRVIFLGDEKHP----------GMLNFDELLALGRAVDDAELAARQATL---DPDDPINI 204
Query: 228 MYTSGTTGDPKGVMVSNENIVT---FIAGVKCLLESVNEKLTSEDVYVSYLPLAHIF 281
YTSGTTG PKG +++ NI+ FI + + KLT ED +PL H F
Sbjct: 205 QYTSGTTGFPKGATLTHRNILNNGYFIG--EAM------KLTEEDRLCIPVPLYHCF 253
|
Length = 559 |
| >gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 7e-09
Identities = 66/308 (21%), Positives = 98/308 (31%), Gaps = 96/308 (31%)
Query: 223 DICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAH--- 279
D +YTSGTTG PK ++S+ + A L L +DV LPL H
Sbjct: 82 DPAFYIYTSGTTGLPKAAIMSHRRWLRAGAVFGGLG-----LLKPDDVLYLCLPLYHSNA 136
Query: 280 -IFDRAIEEVFISNGAAI---------GFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIY 329
+ ++ GA++ FW D+ T F V + +
Sbjct: 137 LTVGWS---SALAAGASLALRRKFSASQFWP--------DVRRYGATAFQYVGELCRYL- 184
Query: 330 SGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRL 389
LNQ + H L+K P ++D+ K+ FG
Sbjct: 185 --LNQPEKPDD-------------RDHPLRKIIG-NGLRPD----IWDEFKERFG----- 219
Query: 390 ILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPP------ 443
+++ YG TE F++L N G VG
Sbjct: 220 --------------------VPRIVEFYGSTE-GNVGFINLFN---KPGAVGRLPPAAIA 255
Query: 444 VPNVDVCLESVPEMEYDALSSTPRGEV---CVKGSTV--FSGYYKREDLTKEVMV----- 493
V DV E P GEV + + F GY E K+++
Sbjct: 256 VVKYDVETEEPIRDANGFCIKVPPGEVGLLLGEITDRNPFDGYTDDEATEKKILRDVFKK 315
Query: 494 -DGWFHTG 500
D +F+TG
Sbjct: 316 GDAYFNTG 323
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444 |
| >gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 2e-08
Identities = 33/112 (29%), Positives = 55/112 (49%), Gaps = 20/112 (17%)
Query: 401 VETFLRVVA---CAHVLQGYGLTETCAGTFVSLPNE--MSMIGTVGPPVPNVDVCL---- 451
+E RV+ + V YG+TET + + ++ + TVG +P+++V +
Sbjct: 329 IEVMKRVIDKMHMSEVTIAYGMTETSPVSTQTRTDDPLEKRVTTVGRALPHLEVKIVDPE 388
Query: 452 --ESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTG 500
E+VP E +GE+C +G +V GY+ + T E + DGW HTG
Sbjct: 389 TGETVPRGE--------QGELCTRGYSVMKGYWNDPEKTAEAIDADGWMHTG 432
|
Length = 559 |
| >gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 4e-08
Identities = 41/172 (23%), Positives = 70/172 (40%), Gaps = 30/172 (17%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGA 139
TY+++ + ++ I+ + ++ +YG P ++ G +P+ DT
Sbjct: 27 TYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSIKSGHAYIPV-DT--- 82
Query: 140 GAVEFIICHSGVS-IAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLA 198
I + E PE++ T E V + E+ E G
Sbjct: 83 --------SIPSERIEMIIEAAGPELVIH---TAELSIDAVGTQIITLSALEQAETSGGP 131
Query: 199 VYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTF 250
V FD VK +D I+YTSG+TG+PKGV +S++N+V+F
Sbjct: 132 V-------------SFDHAVKG-DDNYYIIYTSGSTGNPKGVQISHDNLVSF 169
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502 |
| >gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 4e-08
Identities = 69/305 (22%), Positives = 105/305 (34%), Gaps = 83/305 (27%)
Query: 222 NDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHI- 280
+D I +TSGTTG PKGV +S+ ++ V+ L + +DVY+ PL HI
Sbjct: 172 DDAVLICFTSGTTGRPKGVTISHSALI-----VQSLAKIAIVGYGEDDVYLHTAPLCHIG 226
Query: 281 -FDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVL-DRIYSGLNQKISS 338
A+ + + + + D K L+ I + T VP ++ D I
Sbjct: 227 GLSSALAMLMVG-ACHVLLPKFDAKAALQAIKQHNVTSMITVPAMMADLISLTRKSMTWK 285
Query: 339 GGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLT 398
+ + N G +L A L
Sbjct: 286 VFPSVRKILNGG---------------------------------GSLSSRLLPDAKKLF 312
Query: 399 PHVETFLRVVACAHVLQGYGLTETCAG-TFVSL--PNEMSMIGT---------------- 439
P A + YG+TE C+ TF++L P S T
Sbjct: 313 P----------NAKLFSAYGMTEACSSLTFMTLHDPTLESPKQTLQTVNQTKSSSVHQPQ 362
Query: 440 ---VGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV-DG 495
VG P P+V E++ S+ G + +G V GY+ + T V+ DG
Sbjct: 363 GVCVGKPAPHV--------ELKIGLDESSRVGRILTRGPHVMLGYWGQNSETASVLSNDG 414
Query: 496 WFHTG 500
W TG
Sbjct: 415 WLDTG 419
|
Length = 563 |
| >gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 4e-08
Identities = 46/213 (21%), Positives = 85/213 (39%), Gaps = 13/213 (6%)
Query: 68 IVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALG 127
I + G +Y E+ + + + N + G+ + K ++ NCPE+I +G
Sbjct: 27 IFESSGGVVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFGLAKIG 86
Query: 128 LHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPE 187
VP+ L +I+ +S S+ + P + + L+ I +
Sbjct: 87 AIMVPINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQEDATPLRHIC----LTRV 142
Query: 188 QREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENI 247
+ V S+ + P +D I++TSGTT PKGV++++ N+
Sbjct: 143 ALPADD----GVSSFTQLKAQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNL 198
Query: 248 VTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHI 280
AG + L +DVY++ +P HI
Sbjct: 199 R--FAG---YYSAWQCALRDDDVYLTVMPAFHI 226
|
Length = 517 |
| >gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 4e-08
Identities = 90/430 (20%), Positives = 155/430 (36%), Gaps = 118/430 (27%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGK-CGIYGVNCPEWIIGMEACNALGLHCVPLYDTLG 138
+Y E+ + +V N + GV+ + G+ PE ++ + A +G VPL+ G
Sbjct: 2 SYAELREQSARVANLLADLGVKPGDRVAGLLPRT-PELVVAILATWRVGAIYVPLFTAFG 60
Query: 139 AGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLA 198
A+E+ + HSG K +V+ R
Sbjct: 61 PKAIEYRLGHSGA------------------------KVVVT----NAANRG-------- 84
Query: 199 VYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLL 258
+ D +D+ MYTSGTTG PKGV V + F A ++ +
Sbjct: 85 --------------KLD------DDLFAQMYTSGTTGLPKGVPVPLNALAAFYAYMRYAI 124
Query: 259 ESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIF 318
+ L +DV + +A G A G + L I T+F
Sbjct: 125 D-----LRDDDV---FWNIA------------DPGWAYGLYYAITGPLAMGI----TTVF 160
Query: 319 CAVPRVLDRIYSGL-NQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFD 377
+ Y L ++ N A S ++ + A+ AD
Sbjct: 161 LEGGFTAENTYDVLERLGVT----------NFAGS------PTAYRMLMAAG-ADAAARI 203
Query: 378 KVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMI 437
K+K +R+ S PL P V + + + YG TET G V + ++
Sbjct: 204 KLK------LRVASSAGEPLNPEVVRWFQANLGVTIHDHYGQTET--GMPVGNHHALAHE 255
Query: 438 ---GTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGST----VFSGYYKREDLTKE 490
G++G P+P + +V + + L+ G++ + ++ FSGY+ + T E
Sbjct: 256 VRAGSMGLPLPGYRI---AVLDDDGQPLADGEPGQLAIDVASSPLLWFSGYWDDPEKTAE 312
Query: 491 VMVDGWFHTG 500
++ W+ TG
Sbjct: 313 LIAGRWYVTG 322
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440 |
| >gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 5e-08
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 18/95 (18%)
Query: 417 YGLTET-CAGTFVS--LPNEMSMIGT---VGPPVPNVD--VCLESVPEMEYDALSSTP-- 466
+G+TET TF + ++ ++ VG PVP + +C +++ P
Sbjct: 360 WGMTETHTCDTFTAGFQDDDFDLLSQPVFVGLPVPGTEFKIC-------DFETGELLPLG 412
Query: 467 -RGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG 500
GE+ V+ ++ GY+ + + T E + DGW HTG
Sbjct: 413 AEGEIVVRTPSLLKGYWNKPEATAEALRDGWLHTG 447
|
Length = 567 |
| >gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 5e-08
Identities = 32/123 (26%), Positives = 53/123 (43%), Gaps = 15/123 (12%)
Query: 385 GRVRLILSGAAPLTPHVETFLR--VVACAHVLQGYGLTETCAGTFVSLPNEMSMI----G 438
+ + +G AP H + + ++ G+G++E AGT + + +I G
Sbjct: 252 RHLTALFTGGAP---HAAEDILGWLDDGIPMVDGFGMSE--AGTVFGMSVDCDVIRAKAG 306
Query: 439 TVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV-DGWF 497
G P P V V + D + P GE+ ++G + GY++R T DGWF
Sbjct: 307 AAGIPTPTVQ--TRVVDDQGNDCPAGVP-GELLLRGPNLSPGYWRRPQATARAFTGDGWF 363
Query: 498 HTG 500
TG
Sbjct: 364 RTG 366
|
Length = 488 |
| >gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 6e-08
Identities = 64/291 (21%), Positives = 103/291 (35%), Gaps = 94/291 (32%)
Query: 227 IMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSED------VYVSYLPLAHI 280
++TSG+TG PK V+ + + IA E+L + V + ++P H
Sbjct: 225 YLFTSGSTGMPKAVINTQRMMCANIAMQ--------EQLRPREPDPPPPVSLDWMPWNHT 276
Query: 281 FDRAIEEVFISNGAAIG---FWRGDVKLL-------LEDIGELKPTIFCAVPRVLDRIYS 330
NG G + D K L + ++ E+ PT++ VP
Sbjct: 277 MGGNA----NFNGLLWGGGTLYIDDGKPLPGMFEETIRNLREISPTVYGNVP-------- 324
Query: 331 GLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKV-KQSFGGRVRL 389
Y+ +A+ + D ++SF +RL
Sbjct: 325 ------------------AGYAM----------------LAEAMEKDDALRRSFFKNLRL 350
Query: 390 ILSGAAPLTPHVETFLRVVACAH------VLQGYGLTETCAGTFVSLPNEMSMIGTVGPP 443
+ G A L+ + ++ +A GYG TET A T + +G +G P
Sbjct: 351 MAYGGATLSDDLYERMQALAVRTTGHRIPFYTGYGATET-APTTTGTHWDTERVGLIGLP 409
Query: 444 VPNVDVCLESVPEMEYDALSSTPRG---EVCVKGSTVFSGYYKREDLTKEV 491
+P V++ L P G EV VKG V GY+K +LT
Sbjct: 410 LPGVELKL-------------APVGDKYEVRVKGPNVTPGYHKDPELTAAA 447
|
Length = 624 |
| >gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 8e-08
Identities = 36/122 (29%), Positives = 53/122 (43%), Gaps = 22/122 (18%)
Query: 390 ILSGAAPLTPHVETFLRVVA---CAHVLQGYGLTETCAGTFVS-----LPNEMSMIGTVG 441
I++GA +E RV+ A V YG+TET + + L + +G
Sbjct: 323 IMAGA---PCPIEVMRRVMDEMHMAEVQIAYGMTETSPVSLQTTAADDLERRVETVGRTQ 379
Query: 442 PPVPN--VDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFH 498
P + VD +VP E GE+C +G +V GY+ + T E + DGW H
Sbjct: 380 PHLEVKVVDPDGATVPRGEI--------GELCTRGYSVMKGYWNNPEATAESIDEDGWMH 431
Query: 499 TG 500
TG
Sbjct: 432 TG 433
|
Length = 558 |
| >gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 8e-08
Identities = 37/117 (31%), Positives = 54/117 (46%), Gaps = 7/117 (5%)
Query: 386 RVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSL--PNEMSMIGTVGPP 443
+R L AP+ + R A ++ +G+TE A T L P+E + T G P
Sbjct: 313 SLRTFLCAGAPIPGALVERARAALGAKIVSAWGMTENGAVTLTKLDDPDERA-STTDGCP 371
Query: 444 VPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG 500
+P V+V V + + L + G + V+G + F GY KR L DGWF TG
Sbjct: 372 LPGVEV---RVVDADGAPLPAGQIGRLQVRGCSNFGGYLKRPQLNG-TDADGWFDTG 424
|
Length = 547 |
| >gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 8e-08
Identities = 38/129 (29%), Positives = 56/129 (43%), Gaps = 32/129 (24%)
Query: 389 LILSGAAPLTP-----HVETFLRVVACAHVLQGYGLTETCAGTFVS-------LPNEMSM 436
+ GA+P++P +E F + A Q YG TE A ++ P++
Sbjct: 285 TVYYGASPMSPVRLAEAIERFGPIFA-----QYYGQTE--APMVITYLRKRDHDPDDPKR 337
Query: 437 IGTVGPPVPNVDVCL-----ESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEV 491
+ + G P P + V L V + E GE+CV+G V GY+ R + T E
Sbjct: 338 LTSCGRPTPGLRVALLDEDGREVAQGEV--------GEICVRGPLVMDGYWNRPEETAEA 389
Query: 492 MVDGWFHTG 500
DGW HTG
Sbjct: 390 FRDGWLHTG 398
|
Length = 524 |
| >gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 1e-07
Identities = 52/206 (25%), Positives = 84/206 (40%), Gaps = 26/206 (12%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGA 139
T++E+ D V + A+ GV + I +N E++ + A N LG VP+ L
Sbjct: 44 TWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLAANMLGAIAVPVNFRLTP 103
Query: 140 GAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAV 199
+ F++ G + E P + T + L + V + + +V
Sbjct: 104 PEIAFLVSDCGAHVVVTEAALAP--VATAVRDIVPLLSTVVVAGGSSDD---------SV 152
Query: 200 YSWDEFLQLGENKQFDLPVKKKNDI-CTIMYTSGTTGDPKGVMVSNENIV----TFIAGV 254
+++ L E PV ND IMYTSGTTG PKG ++++ N+ T +
Sbjct: 153 LGYED--LLAEAGPAHAPVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRT- 209
Query: 255 KCLLESVNEKLTSEDVYVSYLPLAHI 280
N + DV +PL HI
Sbjct: 210 -------NGADINSDVGFVGVPLFHI 228
|
Length = 542 |
| >gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 2e-07
Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 12/94 (12%)
Query: 415 QGYGLTETCAGTFVSLPNEM--------SMIGTVGPPVPNVDVCLESVPEMEYDALSSTP 466
Q +GL E G LP + + IGT G ++V + + E L
Sbjct: 310 QYFGLGE-VTGNITVLPPALHDAEDGPDARIGTCGFERTGMEV---QIQDDEGRELPPGE 365
Query: 467 RGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG 500
GE+CV G VF+GYY + + DGWF TG
Sbjct: 366 TGEICVIGPAVFAGYYNNPEANAKAFRDGWFRTG 399
|
Length = 528 |
| >gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 2e-07
Identities = 49/188 (26%), Positives = 83/188 (44%), Gaps = 31/188 (16%)
Query: 66 REIVDGKAGKYVWK------TYKEVYDLVIKVVNAIRTCGVEERGK---CGIYGVNCPEW 116
R +V+G+ GK + +Y E+ V ++ A+R GV+ + + GV+ P
Sbjct: 12 RNVVEGRGGKTAFIDDISSLSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIA 71
Query: 117 IIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIP---EMLKTFPKTTE 173
+G A A G+ V L L A +++ S + FV + +P L P
Sbjct: 72 FLG--AIRA-GIVPVALNTLLTADDYAYMLEDSRARVVFVSGELLPVIKAALGKSP---- 124
Query: 174 HLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGT 233
HL+ V + + + + LA E L E++QF + +D +Y+SG+
Sbjct: 125 HLEHRVVVGRPEAGEVQ------LA-----ELLA-TESEQFKPAATQADDPAFWLYSSGS 172
Query: 234 TGDPKGVM 241
TG PKGV+
Sbjct: 173 TGMPKGVV 180
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 53.0 bits (127), Expect = 3e-07
Identities = 60/288 (20%), Positives = 97/288 (33%), Gaps = 88/288 (30%)
Query: 227 IMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIE 286
++YTSG+TG PKGV VS+ ++V + E LT +D + ++ + FD + E
Sbjct: 4699 VIYTSGSTGRPKGVAVSHGSLVNHLHATGERYE-----LTPDDRVLQFMSFS--FDGSHE 4751
Query: 287 EVF--ISNGAAI-----GFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSG 339
++ + NGA++ W D + L +I E + T+ P
Sbjct: 4752 GLYHPLINGASVVIRDDSLW--DPERLYAEIHEHRVTVLVFPP----------------- 4792
Query: 340 GLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTP 399
Y + H + P +R+ G +
Sbjct: 4793 ----------VYLQQLAE----HAERDGEP---------------PSLRVYCFGGEAVAQ 4823
Query: 400 -HVETFLRVVACAHVLQGYGLTET--------CAGTFVSLPNEMSMIGTVGPPVPNV--- 447
+ R + ++ GYG TET M +G P+ N
Sbjct: 4824 ASYDLAWRALKPVYLFNGYGPTETTVTVLLWKARDGDACGAAYMP----IGTPLGNRSGY 4879
Query: 448 --DVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV 493
D L +P GE+ + G V GY +R LT E V
Sbjct: 4880 VLDGQLNPLP--------VGVAGELYLGGEGVARGYLERPALTAERFV 4919
|
Length = 5163 |
| >gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 4e-07
Identities = 68/307 (22%), Positives = 118/307 (38%), Gaps = 70/307 (22%)
Query: 209 GENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSE 268
++ +D P +N ++ YTSGTTG+PKG + S+ + V G L +++ L++
Sbjct: 163 AQDGDYDWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYG-AALPDAMG--LSAR 219
Query: 269 DVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRG---DVKLLLEDIGELKPTIFCAVPRVL 325
D + +P+ H+ + GA + G D K L E I + T VP V
Sbjct: 220 DAVLPVVPMFHVNAWGLPYSAPLTGAKLVL-PGPDLDGKSLYELIEAERVTFSAGVPTV- 277
Query: 326 DRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGG 385
+ GL + GL +F L+
Sbjct: 278 ---WLGLLNHMREAGL------------RFSTLR-------------------------- 296
Query: 386 RVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCA-GTFVSLPNE---------MS 435
R ++ G+A + TF V+ +G+TE GT L +
Sbjct: 297 --RTVIGGSACPPAMIRTFEDEYG-VEVIHAWGMTEMSPLGTLCKLKWKHSQLPLDEQRK 353
Query: 436 MIGTVGPPVPNVDVCL--ESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV 493
++ G + VD+ + + E+ +D + G++ V+G V Y++ + +V
Sbjct: 354 LLEKQGRVIYGVDMKIVGDDGRELPWDGKAF---GDLQVRGPWVIDRYFRGDA---SPLV 407
Query: 494 DGWFHTG 500
DGWF TG
Sbjct: 408 DGWFPTG 414
|
Length = 539 |
| >gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 5e-07
Identities = 33/127 (25%), Positives = 60/127 (47%), Gaps = 17/127 (13%)
Query: 208 LGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEK--L 265
E+ P +D+ +++TSG+TG+PKGVM+++ V I VN + +
Sbjct: 112 AAESPAPPPPRVDPDDLAYVIFTSGSTGEPKGVMITHRAAVNTI-------LDVNRRFGV 164
Query: 266 TSEDVYVSYLPLAHIFDRAIEEVF--ISNGAAIGF----WRGDVKLLLEDIGELKPTIFC 319
D ++ L FD ++ ++F +S GAA+ R D E + T++
Sbjct: 165 GPADRVLALSALH--FDLSVYDIFGALSAGAALVLPDEARRRDPDHWAELVQRHGVTVWN 222
Query: 320 AVPRVLD 326
+VP ++D
Sbjct: 223 SVPALMD 229
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476 |
| >gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 5e-07
Identities = 71/299 (23%), Positives = 113/299 (37%), Gaps = 70/299 (23%)
Query: 214 FDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVS 273
F + K D+ I++TSGT PKGV +++ N+ +A + L+ + K +DV +S
Sbjct: 175 FGVSDKDPEDVAVILFTSGTEKLPKGVPLTHANL---LANQRACLKFFSPK--EDDVMMS 229
Query: 274 YLPLAHIFD----------RAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPR 323
+LP H + + VF N K ++E I E K T + P
Sbjct: 230 FLPPFHAYGFNSCTLFPLLSGVPVVFAYNPL-------YPKKIVEMIDEAKVTFLGSTPV 282
Query: 324 VLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSF 383
D I L L F + F + ++ + ++F
Sbjct: 283 FFDYI---LKTAKKQESCLPSLRFVVIGGDAFKD----------------SLYQEALKTF 323
Query: 384 GGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPP 443
PH++ LR QGYG TE ++ N VG P
Sbjct: 324 ---------------PHIQ--LR--------QGYGTTECSPVITINTVNSPKHESCVGMP 358
Query: 444 VPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDG--WFHTG 500
+ +DV + V E +SS G V +G+++FSGY + V + G W+ TG
Sbjct: 359 IRGMDVLI--VSEETKVPVSSGETGLVLTRGTSLFSGYLGEDFGQGFVELGGETWYVTG 415
|
Length = 539 |
| >gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 6e-07
Identities = 41/178 (23%), Positives = 69/178 (38%), Gaps = 27/178 (15%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPE-WIIGMEACNALGLHCVPLYDTLG 138
TY ++ D + + + A G+ + +N PE + A GL L+
Sbjct: 39 TYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIGAAQ-LAGLRRTALHPL-- 95
Query: 139 AGAVE---FIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQR---EEI 192
G+++ +++ +G+S V+ E LK +++ V P+
Sbjct: 96 -GSLDDHAYVLEDAGISTLIVDPAPFVERALALLARVPSLKHVLTLGPV-PDGVDLLAAA 153
Query: 193 EKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTF 250
K+G A LP DI + YT GTTG PKGVM ++ +I T
Sbjct: 154 AKFGPA-----------PLVAAALP----PDIAGLAYTGGTTGKPKGVMGTHRSIATM 196
|
Length = 524 |
| >gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 6e-07
Identities = 45/197 (22%), Positives = 72/197 (36%), Gaps = 33/197 (16%)
Query: 61 RMLGQREIVDGK-AGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIG 119
R+ G RE+V G V TY +++D +KV A+ G++ + N
Sbjct: 21 RIHGNREVVTRSVEGPIVRTTYAQIHDRALKVSQALDRDGIKLGDRVATIAWNT------ 74
Query: 120 MEACNALGLHCVPLYDTLGAGAV-------------EFIICHSGVSIAFVEEKKIPEMLK 166
H Y +G GA+ +II H+ + + +P + K
Sbjct: 75 -------WRHLEAWYGIMGIGAICHTVNPRLFPEQIAWIINHAEDRVVITDLTFVPILEK 127
Query: 167 TFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICT 226
K ++ V + + K +A W + F +N
Sbjct: 128 IADKL-PSVERYVVLTD-AAHMPQTTLKNAVAYEEWIA----EADGDFAWKTFDENTAAG 181
Query: 227 IMYTSGTTGDPKGVMVS 243
+ YTSGTTGDPKGV+ S
Sbjct: 182 MCYTSGTTGDPKGVLYS 198
|
Length = 542 |
| >gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA) | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 1e-06
Identities = 39/156 (25%), Positives = 59/156 (37%), Gaps = 53/156 (33%)
Query: 387 VRLILSGAAPLTPHV-ETFLRVVACAH-----VLQGYGLTETCAGTFVSLP--------- 431
VRLI +GA P++ + E FL +A + YGL E VS P
Sbjct: 230 VRLIFNGAEPISADLCEEFLEKMAPFGLRPNAMYPVYGLAEATLA--VSFPKPGEPFKTV 287
Query: 432 ---------------------NEMSMIGTVGPPVPNVDVCL-----ESVPEMEYDALSST 465
+ +S + VG P+ ++ + E +P+
Sbjct: 288 CLDRNHLKVGVKIIEIDPKNSDAISFV-EVGSPIDGCEIRIVDDAGEVLPDRTI------ 340
Query: 466 PRGEVCVKGSTVFSGYYKREDLTKEVMV-DGWFHTG 500
G + +KG V SGYY + TK+ + DGW TG
Sbjct: 341 --GHIQIKGDNVTSGYYNNPEATKKSITPDGWLKTG 374
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499 |
| >gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 1e-06
Identities = 40/169 (23%), Positives = 67/169 (39%), Gaps = 11/169 (6%)
Query: 80 TYKEVYDLVIKVVNAIR-TCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLG 138
T+ + + +A+ G+ + G NC E + + A +G PL L
Sbjct: 40 TFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVLFAVACMGAVFNPLNKQLM 99
Query: 139 AGAVEFIICHSGVSIAFVEE---KKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEK- 194
+ II H+ + + +++ E+LK P V F
Sbjct: 100 NDQIVHIINHAEDEVIVADPRLAEQLGEILKECP-CVRA----VVFIGPSDADSAAAHMP 154
Query: 195 YGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVS 243
G+ VYS++ L G + +D P + I Y++GTTG PKGV+ S
Sbjct: 155 EGIKVYSYEALLD-GRSTVYDWPELDETTAAAICYSTGTTGAPKGVVYS 202
|
Length = 576 |
| >gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 1e-06
Identities = 48/216 (22%), Positives = 86/216 (39%), Gaps = 22/216 (10%)
Query: 68 IVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALG 127
+VD Y TY + ++ N + G+E + E+ I AC +G
Sbjct: 42 VVDNHGASY---TYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLACLKVG 98
Query: 128 LHCVPLYDTLGAGAVEFII--CHSGVSIAFVEEKKIPEMLKTFP--KTTEHLKTIVSFSK 183
VPL + + +++ C + + A K+ + P L+ IV K
Sbjct: 99 AVSVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQNQLPQLQQIVGVDK 158
Query: 184 VKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVS 243
+ P S + + E + +++ +++TSGT G PKGVM++
Sbjct: 159 LAPATSSL---------SLSQIIADYEPLTTAITTHG-DELAAVLFTSGTEGLPKGVMLT 208
Query: 244 NENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAH 279
+ NI +A + +N LT +DV++ PL H
Sbjct: 209 HNNI---LASERAYCARLN--LTWQDVFMMPAPLGH 239
|
Length = 547 |
| >gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 3e-06
Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 7/59 (11%)
Query: 222 NDICTIMYTSGTTGDPKGVM-VSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAH 279
+D+ ++YTSGTTG+PKGVM +N T +A + E + L ++DV + P+AH
Sbjct: 197 DDVTQLIYTSGTTGEPKGVMHTAN----TLMANIVPYAERL--GLGADDVILMASPMAH 249
|
Length = 547 |
| >gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 3e-06
Identities = 38/125 (30%), Positives = 58/125 (46%), Gaps = 21/125 (16%)
Query: 386 RVRLILSGAAPLTPHVETFLRVVAC----AHVLQGYGLTETCAGTFVSLPNE-MSMIGTV 440
+R++ GAAP + T LR +A A +L +G TE T + L + + +G+V
Sbjct: 291 ALRVLSWGAAPASD---TLLRQMAATFPEAQILAAFGQTEMSPVTCMLLGEDAIRKLGSV 347
Query: 441 GPPVPN-----VDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDG 495
G +P VD + VP E GE+ + T+ SGY+ + T E G
Sbjct: 348 GKVIPTVAARVVDENMNDVPVGEV--------GEIVYRAPTLMSGYWNNPEATAEAFAGG 399
Query: 496 WFHTG 500
WFH+G
Sbjct: 400 WFHSG 404
|
Length = 542 |
| >gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 3e-06
Identities = 36/144 (25%), Positives = 58/144 (40%), Gaps = 30/144 (20%)
Query: 108 IYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAF-VEEKKIPEMLK 166
++G PE + G +P+ + A +E II + S+ EE
Sbjct: 57 VFGHMSPEMLATFLGAVKAGHAYIPVDVSSPAERIEMIIEVAKPSLIIATEE-------- 108
Query: 167 TFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICT 226
P + I ++ ++I G FD VK +D
Sbjct: 109 -LPLEILGIPVI------TLDELKDI-------------FATGNPYDFDHAVKG-DDNYY 147
Query: 227 IMYTSGTTGDPKGVMVSNENIVTF 250
I++TSGTTG PKGV +S++N+V+F
Sbjct: 148 IIFTSGTTGKPKGVQISHDNLVSF 171
|
Length = 503 |
| >gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 4e-06
Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 5/66 (7%)
Query: 215 DLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSY 274
L + +D ++ TSG+TG PK V++++ NI+ AG VN T +DV +++
Sbjct: 160 PLHPARPDDPALLLLTSGSTGVPKCVVLTHRNILARSAGT----VQVNG-FTPDDVSLNW 214
Query: 275 LPLAHI 280
+PL H+
Sbjct: 215 MPLDHV 220
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 4e-06
Identities = 38/118 (32%), Positives = 48/118 (40%), Gaps = 47/118 (39%)
Query: 217 PVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKL---------TS 267
P + +DI + YTSG+T PKGV VS+ N+V NE+L
Sbjct: 161 PALQPDDIAFLQYTSGSTALPKGVQVSHGNLVA------------NEQLIRHGFGIDLNP 208
Query: 268 EDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVL 325
+DV VS+LPL H D+ L IG L IF VP VL
Sbjct: 209 DDVIVSWLPLYH----------------------DMGL----IGGLLQPIFSGVPCVL 240
|
Length = 4334 |
| >gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 4e-06
Identities = 33/130 (25%), Positives = 51/130 (39%), Gaps = 35/130 (26%)
Query: 387 VRLILSGAAPLTPHV-ETFLRVVA-CAHVLQGYGLTETCAGTFVSLPNEMSMIGT----- 439
+R ++S AP+ V E F ++ A +L YG TE +LP +S I +
Sbjct: 290 LRRVISAGAPVPIAVIERFRAMLPPDAEILTPYGATE-------ALP--ISSIESREILF 340
Query: 440 -------------VGPPVPNVDVCLESVPEMEYDALSSTPR------GEVCVKGSTVFSG 480
VG PV V+V + ++ + R GE+ V G V
Sbjct: 341 ATRAATDNGAGICVGRPVDGVEVRIIAISDAPIPEWDDALRLATGEIGEIVVAGPMVTRS 400
Query: 481 YYKREDLTKE 490
YY R + T+
Sbjct: 401 YYNRPEATRL 410
|
Length = 552 |
| >gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 8e-06
Identities = 34/97 (35%), Positives = 46/97 (47%), Gaps = 19/97 (19%)
Query: 414 LQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVD------VCLESVPEMEYDALSSTPR 467
++GYGLTET A T + P + + +G P VD LE +P E
Sbjct: 334 VEGYGLTETMAQTHSN-PPDRPKLQCLGIPTFGVDARVIDPETLEELPPGE--------V 384
Query: 468 GEVCVKGSTVFSGYYKREDLTKEVMV--DG--WFHTG 500
GE+ V G VF GY+ R + T E + DG +F TG
Sbjct: 385 GEIVVHGPQVFKGYWNRPEATAEAFIEIDGKRFFRTG 421
|
Length = 546 |
| >gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 8e-06
Identities = 49/236 (20%), Positives = 84/236 (35%), Gaps = 18/236 (7%)
Query: 48 DVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCG 107
D F AV P+ L G ++ +Y+E+ V ++ + GV
Sbjct: 26 DHFDAAVANCPDKPALTAYRDGHGAVRRF---SYRELDCRVDRIAVGLARLGVGRGDVVS 82
Query: 108 IYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEK----KIPE 163
N E+ AC +G PL + F++ H+ + V
Sbjct: 83 FQLPNRWEFTALYLACARIGAVLNPLMPIFRERELSFMLNHADSKVFVVPSVFRGFDHAA 142
Query: 164 MLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKND 223
M + L+ +V + + + L D+ P +D
Sbjct: 143 MARELQSKLPALRQVVVIDGDGDDSFDRV----LMTPERDDTPDAAAILAGPRP--SPDD 196
Query: 224 ICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAH 279
+ ++YTSGTTG+PKGVM + T + + E + +L DV + P+AH
Sbjct: 197 VTQLIYTSGTTGEPKGVMHTAN---TLFSNIHPYAERL--ELGGGDVILMASPMAH 247
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538 |
| >gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 8e-06
Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 23/122 (18%)
Query: 387 VRLILSGAAPL---TPHV--ETF-LRVVACAHVLQGYGLTETCAGTFVSLPNEM-SMIGT 439
+R + +GA + T E F +R+ L+GYG+TET ++ P M + GT
Sbjct: 909 LRYVFAGAEKVKEETRQTWMEKFGIRI------LEGYGVTETAPVIALNTP--MHNKAGT 960
Query: 440 VGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDL-TKEVMVDGWFH 498
VG +P ++ LE VP ++ G + V+G V GY + E+ E DGW+
Sbjct: 961 VGRLLPGIEYRLEPVPGIDEG-------GRLFVRGPNVMLGYLRAENPGVLEPPADGWYD 1013
Query: 499 TG 500
TG
Sbjct: 1014 TG 1015
|
Length = 1140 |
| >gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 9e-06
Identities = 32/114 (28%), Positives = 48/114 (42%), Gaps = 5/114 (4%)
Query: 388 RLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTV-GPPVPN 446
L AP+ + + A ++ +G+TE A T + + T G P+P
Sbjct: 313 FTFLCAGAPIPGILVERAWELLGALIVSAWGMTENGAVTVTEPDDALEKASTTDGRPLPG 372
Query: 447 VDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG 500
V+V V + LS G + V+G + F GY KR L +GWF TG
Sbjct: 373 VEV---KVIDANGAKLSQGETGRLLVRGCSNFGGYLKRPHLNS-TDAEGWFDTG 422
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538 |
| >gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 1e-05
Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 26/96 (27%)
Query: 416 GYGLTET----CAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVC 471
GYGLTE CA L VG P+P +V L GE+
Sbjct: 270 GYGLTEMASTVCAKRADGLAG-------VGSPLPGREVKLVD--------------GEIW 308
Query: 472 VKGSTVFSGYYKREDLTKEVMVDGWFHT-GMGVWEQ 506
++G+++ GY+++ L V +GWF T G W+
Sbjct: 309 LRGASLALGYWRQGQLVPLVNDEGWFATRDRGEWQN 344
|
Length = 458 |
| >gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 1e-05
Identities = 94/409 (22%), Positives = 151/409 (36%), Gaps = 106/409 (25%)
Query: 128 LHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIP---EMLKTFPKTTEH-----LKTIV 179
++CV + L A + F++ HS + V+++ E LK + + L ++
Sbjct: 97 VNCVNI--RLNAPTIAFLLEHSKSEVVMVDQEFFTLAEEALKILAEKKKSSFKPPLLIVI 154
Query: 180 SFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKG 239
P+ + G Y ++FL+ G+ + P + + YTSGTT PKG
Sbjct: 155 GDPTCDPKSLQYALGKGAIEY--EKFLETGDPEFAWKPPADEWQSIALGYTSGTTASPKG 212
Query: 240 VMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHI----FDRAIEEVFISNGAA 295
V++ + A + L ++ + VY+ LP+ H F + + G
Sbjct: 213 VVLHHRG-----AYLMALSNALIWGMNEGAVYLWTLPMFHCNGWCFTWTLAAL---CGTN 264
Query: 296 IGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKF 355
I + K + I T FCA P VL+ T+ N
Sbjct: 265 ICLRQVTAKAIYSAIANYGVTHFCAAPVVLN------------------TIVN------- 299
Query: 356 HNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHV-----ETFLRVVAC 410
+P ++ I+ V ++ +GAAP P V E RV
Sbjct: 300 ------------APKSETIL------PLPRVVHVMTAGAAP-PPSVLFAMSEKGFRV--- 337
Query: 411 AHVLQGYGLTETCAGTFV--------SLPNE----------MSMIGTVGPPVPNVDV-CL 451
H YGL+ET + V SLP E + IG G V VD +
Sbjct: 338 THT---YGLSETYGPSTVCAWKPEWDSLPPEEQARLNARQGVRYIGLEGLDV--VDTKTM 392
Query: 452 ESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG 500
+ VP GE+ ++G+ V GY K +E +GWFH+G
Sbjct: 393 KPVPA------DGKTMGEIVMRGNMVMKGYLKNPKANEEAFANGWFHSG 435
|
Length = 567 |
| >gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 2e-05
Identities = 29/120 (24%), Positives = 47/120 (39%), Gaps = 16/120 (13%)
Query: 388 RLILSGAAPLTPHVETFLRVVACAH-----VLQGYGLTETCAGTFVSLPNEMS-MIGTVG 441
R L G + +V +L YG TE+ V+L + +S + T G
Sbjct: 305 RFFLCGGTTIPK------KVARECQQRGIKLLSVYGSTESSPHAVVNLDDPLSRFMHTDG 358
Query: 442 PPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTG 500
V++ V + L GE +G VF GY +LT + +GW+++G
Sbjct: 359 YAAAGVEI---KVVDEARKTLPPGCEGEEASRGPNVFMGYLDEPELTARALDEEGWYYSG 415
|
Length = 547 |
| >gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 2e-05
Identities = 72/291 (24%), Positives = 106/291 (36%), Gaps = 65/291 (22%)
Query: 215 DLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSY 274
D + +D+ I +TSGTTG PKG M + +I +A V + T +DV++
Sbjct: 140 DKRLTAADDVALIGFTSGTTGLPKGTMHFHRDI---LAICDAFPRHVLQP-TPDDVFIGS 195
Query: 275 LPLAHIFDRAIEEVF-ISNGA-AIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGL 332
PLA F +F + GA A+ + LLL+ I E + TI
Sbjct: 196 PPLAFTFGLGGLVLFPLRFGASAVLLEQATPPLLLKAIQEHRATI--------------- 240
Query: 333 NQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILS 392
LF +P A + + KVK +R +S
Sbjct: 241 -------------LF-------------------TAPTAYRAMLIKVKAFDISSLRKCVS 268
Query: 393 GAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLE 452
L V ++ G G TE F+S E + G G PVP + +
Sbjct: 269 AGETLPAKVWQDWYERTGLKIIDGIGATEMLH-IFISANEENAKPGATGKPVPGYEARIV 327
Query: 453 SVPEMEYDALSSTPRGEV---CVKGSTVFSGYYKREDLTKEVMVDGWFHTG 500
D + PRGE V+G T Y ++ +E + DGW TG
Sbjct: 328 D------DQGNEVPRGEAGRLAVRGPT--GCRYLDDERQQEYVRDGWNVTG 370
|
ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 2e-05
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 8/75 (10%)
Query: 215 DLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSY 274
++ + N + ++YTSG+TG PKGV +S+ + ++ + L+ L ++D +
Sbjct: 650 EVALDPDN-LAYVIYTSGSTGQPKGVAISHGALANYVCVIAERLQ-----LAADDSMLMV 703
Query: 275 LPLAHIFDRAIEEVF 289
A FD + E+F
Sbjct: 704 STFA--FDLGVTELF 716
|
Length = 3956 |
| >gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 3e-05
Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 5/54 (9%)
Query: 227 IMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHI 280
I+YTSGTTG PKGV++S I A + L E+ + T++DV V LPL H+
Sbjct: 133 IVYTSGTTGPPKGVVLSRRAIA---ADLDALAEA--WQWTADDVLVHGLPLFHV 181
|
Length = 471 |
| >gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 3e-05
Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 9/92 (9%)
Query: 414 LQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLES-VPEMEYDALSSTPRGEVCV 472
L YG+TET G P + ++G P C E+ + + L + GE+C+
Sbjct: 316 LTSYGMTETIVGIIGDRPGDKRRWPSIGRP----GFCYEAEIRDDHNRPLPAGEIGEICI 371
Query: 473 KG---STVFSGYYKREDLTKEVM-VDGWFHTG 500
KG T+F YY T +V+ DGW HTG
Sbjct: 372 KGVPGKTIFKEYYLDPKATAKVLEADGWLHTG 403
|
Length = 517 |
| >gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 3e-05
Identities = 34/95 (35%), Positives = 45/95 (47%), Gaps = 11/95 (11%)
Query: 415 QGYGLTETCAGTFVSLPNEMSMI-----GTVGPPVPNVDVCLESV----PEMEYDALSST 465
Q YGL+ET T + LP + I G VG P P VDV L + P A S
Sbjct: 315 QVYGLSET-GCTALCLPTDDGSIVKIEAGAVGRPYPGVDVYLAATDGIGPTAP-GAGPSA 372
Query: 466 PRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG 500
G + +K GY+ + T EV++DGW +TG
Sbjct: 373 SFGTLWIKSPANMLGYWNNPERTAEVLIDGWVNTG 407
|
Length = 540 |
| >gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 4e-05
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 14/68 (20%)
Query: 441 GPPVPNVDVCL-----ESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDG 495
G +P ++ + +PE G +CV+G ++ SGY++ E+ + DG
Sbjct: 388 GKALPGHEIEIRNEAGMPLPERVV--------GHICVRGPSLMSGYFRDEESQDVLAADG 439
Query: 496 WFHTG-MG 502
W TG +G
Sbjct: 440 WLDTGDLG 447
|
Length = 579 |
| >gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 5e-05
Identities = 52/254 (20%), Positives = 93/254 (36%), Gaps = 39/254 (15%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGA 139
TY E+ +L + +R GV + ++ NCP++ I LG VP+
Sbjct: 60 TYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFFGILKLGAVHVPVSPLFRE 119
Query: 140 GAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTT-EHLKTIVSFSKVKPEQ-----REEIE 193
+ + + +G + ++ P + + +T+ H+ S + V P + + +
Sbjct: 120 HELSYELNDAGAEVLLALDQLAPVVEQVRAETSLRHVIV-TSLADVLPAEPTLPLPDSLR 178
Query: 194 KYGLAVYSWDEFLQL--GENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFI 251
LA + L LP + + + YT GTTG PKG + ++V +
Sbjct: 179 APRLAAAGAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMV-YT 237
Query: 252 AGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKLLLEDIG 311
A V + V++S+LP FW + E+ G
Sbjct: 238 AAAAYA---VAVVGGEDSVFLSFLPE--------------------FW-----IAGENFG 269
Query: 312 ELKPTIFCAVPRVL 325
L P +F VL
Sbjct: 270 LLFP-LFSGATLVL 282
|
Length = 567 |
| >gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 6e-05
Identities = 47/188 (25%), Positives = 73/188 (38%), Gaps = 48/188 (25%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALG-LHCV------- 131
TY+E++ V + N +++ GV++ + IY PE I M AC +G +H V
Sbjct: 90 TYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAMLACARIGAIHSVVFGGFSA 149
Query: 132 -PLYDTLGAGAVEFIICHSGVSIAFVEEKKIP------EMLKTFPKTTEHLKTIVSFSKV 184
L D + + +I K IP E L+ P + EH +V V
Sbjct: 150 EALADRINDAGAKLVITADE---GLRGGKVIPLKAIVDEALEKCPVSVEH--VLV----V 200
Query: 185 KPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICT-----------IMYTSGT 233
+ G V+ W + + K + C I+YTSG+
Sbjct: 201 RRTGNPVPWVEGRDVW-WHDL------------MAKASAYCEPEPMDSEDPLFILYTSGS 247
Query: 234 TGDPKGVM 241
TG PKGV+
Sbjct: 248 TGKPKGVL 255
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625 |
| >gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 8e-05
Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 13/68 (19%)
Query: 438 GTVGPPVPNV-----DVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM 492
G+ G PV NV D V E GE+ + + GY+ + T E
Sbjct: 341 GSAGRPVLNVETRVVDDDGNDVAPGEV--------GEIVHRSPQLMLGYWDDPEKTAEAF 392
Query: 493 VDGWFHTG 500
GWFH+G
Sbjct: 393 RGGWFHSG 400
|
Length = 523 |
| >gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 8e-05
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 222 NDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHI 280
+D+ I YTSGTTG PKG M ++ ++ + LT + V +++LPL H+
Sbjct: 84 DDVAVIPYTSGTTGLPKGCMHTHRTVLA-----TAAASAAWSGLTPDSVLLAFLPLFHV 137
|
The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430 |
| >gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 8e-05
Identities = 71/308 (23%), Positives = 106/308 (34%), Gaps = 78/308 (25%)
Query: 218 VKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPL 277
+ K +D I++TSG+TG PKGV+ ++ I ++ L + D ++ P
Sbjct: 81 IPKADDPAAILFTSGSTGPPKGVVYTHRTFAAQIDALRSLYG-----IREGDRDLAAFPP 135
Query: 278 AHIFDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKIS 337
F G A+G + I + PT P LD
Sbjct: 136 -----------FALFGPALG--------VTTVIPAMDPT----APAALD----------- 161
Query: 338 SGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGR----VRLILSG 393
L + + I S F SP K V ++ G +R +LS
Sbjct: 162 -PAKLAQAIREIGASCVF-----------GSPALLKNVARYCEE--NGIQLPSLRRVLSA 207
Query: 394 AAPLTPHV-ETFLRVVA-CAHVLQGYGLTETCAGTFVSL------PNEMSMIGT---VGP 442
AP+ P + F+ + A + YG TE + E G VG
Sbjct: 208 GAPVPPDLLRRFVANLMPEAEIHTPYGATEALPVASIEGREVLAESAEPPEAGAGVCVGH 267
Query: 443 PVPNVDVC---LESVPEMEYDALSSTPR---GEVCVKGSTVFSGYYKREDLTKEVMVD-- 494
PVP +DV ++ P +D P GE+ V G V YY R + TK +
Sbjct: 268 PVPGIDVRIIPIDDGPIASWDDDIELPPGEVGEIIVSGPHVTREYYNRPEATKLAKISDG 327
Query: 495 --GWFHTG 500
W G
Sbjct: 328 NRIWHRMG 335
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455 |
| >gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 8e-05
Identities = 31/109 (28%), Positives = 41/109 (37%), Gaps = 14/109 (12%)
Query: 402 ETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDV----CLESVPEM 457
F R C V GYG +E A V P G++G P V + L
Sbjct: 281 AEFSRRFGC-QVEDGYGSSEG-AVIVVREPGTPP--GSIGRGAPGVAIYNPETLTECAVA 336
Query: 458 EYDAL-----SSTPRGE-VCVKGSTVFSGYYKREDLTKEVMVDGWFHTG 500
+DA + GE V G+ F GYY + T E M G + +G
Sbjct: 337 RFDAHGALLNADEAIGELVNTAGAGFFEGYYNNPEATAERMRHGMYWSG 385
|
Length = 540 |
| >gnl|CDD|140318 PTZ00297, PTZ00297, pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 9e-05
Identities = 82/433 (18%), Positives = 159/433 (36%), Gaps = 51/433 (11%)
Query: 39 PIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTC 98
P+ G+ S +++ +V R+ R LGQ ++G+ W TY V ++ + +
Sbjct: 422 PLAGVRSLGEMWERSVTRHSTFRCLGQTS----ESGESEWLTYGTVDARARELGSGLLAL 477
Query: 99 GVEERGKCGIYGVNCP---EWIIGMEACNALGLHCVPLYDTLGAG-AVEFIICHSGVSIA 154
GV + GV+C +I AC G +PL +G G + +I + +
Sbjct: 478 GV---RPGDVIGVDCEASRNIVILEVACALYGFTTLPL---VGKGSTMRTLIDEHKIKVV 531
Query: 155 FVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEK-YGLAVYSWDEFLQLGENKQ 213
F + + +L + L+T+V E + + + + ++ Q G
Sbjct: 532 FADRNSVAAILTC---RSRKLETVVYTHSFYDEDDHAVARDLNITLIPYEFVEQKGRLCP 588
Query: 214 FDLPVKKKNDICTIMY----TSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSED 269
L D TS + V V++ +++ I+ + ++ V +
Sbjct: 589 VPLKEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTL--VMTGVLPSSFKKH 646
Query: 270 VYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIY 329
+ V + P A +F+R ++G+A+ D L + +PTI A P +
Sbjct: 647 LMVHFTPFAMLFNRVFVLGLFAHGSAVA--TVDAAHLQRAFVKFQPTILVAAPSLFSTSR 704
Query: 330 SGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRL 389
L++ + LF A+ + + + H S + I F ++ GG V
Sbjct: 705 LQLSRANERYSAVYSWLFERAFQLR---SRLINIHRRDSSLLRFIFFRATQELLGGCVEK 761
Query: 390 ILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTV------GPP 443
I V+ + + L E + +V E+ + + G P
Sbjct: 762 I----------------VLCVSEESTSFSLLEHISVCYVPCLREVFFLPSEGVFCVDGTP 805
Query: 444 VPNVDVCLESVPE 456
P++ V LE E
Sbjct: 806 APSLQVDLEPFDE 818
|
Length = 1452 |
| >gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 1e-04
Identities = 73/322 (22%), Positives = 116/322 (36%), Gaps = 97/322 (30%)
Query: 222 NDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIF 281
+D+ + TSG+TG PK V +++ N+ A + + + + + DV VS+LPL H
Sbjct: 152 DDLALMQLTSGSTGSPKAVQITHGNLY---ANAEAMFVAAEFDVET-DVMVSWLPLFH-- 205
Query: 282 D------------RAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIY 329
D E V ++ + F R D L E I + + T+ A P
Sbjct: 206 DMGMVGFLTVPMYFGAELVKVT---PMDFLR-DPLLWAELISKYRGTMTAA-P------- 253
Query: 330 SGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRL 389
N AY+ L++ K FD +R
Sbjct: 254 ------------------NFAYALLARRLRRQAKPGA---------FDL------SSLRF 280
Query: 390 ILSGAAPLTPH-VETFLRVVA-----CAHVLQGYGLTE-TCAGTFVSLPNEMSM------ 436
L+GA P+ P VE L A +L YG+ E T A +F + +
Sbjct: 281 ALNGAEPIDPADVEDLLDAGARFGLRPEAILPAYGMAEATLAVSFSPCGAGLVVDEVDAD 340
Query: 437 ------------------IGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVF 478
+ T+GPP+P ++V V + + L G + ++G +V
Sbjct: 341 LLAALRRAVPATKGNTRRLATLGPPLPGLEV---RVVDEDGQVLPPRGVGVIELRGESVT 397
Query: 479 SGYYKREDLTKEVMVDGWFHTG 500
GY + DGW TG
Sbjct: 398 PGYLTMDGFIPAQDADGWLDTG 419
|
Length = 545 |
| >gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 1e-04
Identities = 31/127 (24%), Positives = 46/127 (36%), Gaps = 17/127 (13%)
Query: 382 SFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSM-IGTV 440
+ R+R + SG L + + R V + YG TE + G++
Sbjct: 204 RYDLRLRAVASGGESLGEELLEWARDELGLTVNEFYGQTE-ANLVVGNCAALGPARPGSM 262
Query: 441 GPPVPNVDVCL-----ESVPEMEYDALSSTPRGEVCVK--GSTVFSGYYKREDLTKEVMV 493
G PVP +V + VP E GE+ VK +F GY+ + T
Sbjct: 263 GKPVPGHEVAVVDDAGRPVPPGE--------VGEIAVKRPDPVMFLGYWNNPEATAAKFA 314
Query: 494 DGWFHTG 500
W TG
Sbjct: 315 GDWLLTG 321
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439 |
| >gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 2e-04
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 213 QFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYV 272
+ +D I++TSG+ G PKGV++S+ N++ A V ++ + ED
Sbjct: 784 LVYFCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARID-----FSPEDKVF 838
Query: 273 SYLPLAHIF 281
+ LP+ H F
Sbjct: 839 NALPVFHSF 847
|
Length = 1140 |
| >gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS) | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 2e-04
Identities = 45/187 (24%), Positives = 72/187 (38%), Gaps = 43/187 (22%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALG---LHCVPLYDT 136
++ E+ V ++ A+R GV+ + Y N PE +I M A ++G C P
Sbjct: 88 SWAELRSQVARLAAALRDLGVKPGDRVAGYLPNVPEAVIAMLATASIGAIWSSCSP---D 144
Query: 137 LGAGAV---------EFIICHSGVSIA---FVEEKKIPEMLKTFPKTTEHLKTIVSFSKV 184
G AV + + G +KI E++K P L+ +V +
Sbjct: 145 FGVEAVLDRFGQIEPKVLFAVDGYVYNGKEHDRREKIAEIVKGLPS----LEAVVVVPYL 200
Query: 185 KPEQREEIEKYGLAVYSWD---------EFLQLGENKQFDLPVKKKNDICTIMYTSGTTG 235
+ + K+ W EF +L FD P+ I+Y+SGTTG
Sbjct: 201 SSDAQPAALKFSALTLLWSLAGDRAAPLEFERLP----FDHPL-------WILYSSGTTG 249
Query: 236 DPKGVMV 242
PK +V
Sbjct: 250 LPKC-IV 255
|
AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616 |
| >gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 4e-04
Identities = 33/122 (27%), Positives = 45/122 (36%), Gaps = 15/122 (12%)
Query: 385 GRVRL-ILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPP 443
GR L L G L + L + A + YG TET + + T+G P
Sbjct: 205 GRESLTALCGGEALPRDLAERL-LSTGAELWNMYGPTETTIWSTCARVTAADGPVTIGRP 263
Query: 444 VPN-----VDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFH 498
+ N +D L+ VP GE+ + G V GY R +LT E V F
Sbjct: 264 IANTQVYVLDEDLQPVPPGVP--------GELYIGGDGVARGYLGRPELTAERFVPDPFD 315
Query: 499 TG 500
Sbjct: 316 DP 317
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 6e-04
Identities = 56/285 (19%), Positives = 96/285 (33%), Gaps = 74/285 (25%)
Query: 227 IMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIE 286
++YTSG+TG PKGV + + + + ++ L D + + + FD +E
Sbjct: 3201 VIYTSGSTGKPKGVGIRHSALSNHLCWMQQAYG-----LGVGDRVLQFTTFS--FDVFVE 3253
Query: 287 EVF--ISNGAAI-----GFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSG 339
E+F + +GA + WR D LL+E
Sbjct: 3254 ELFWPLMSGARVVLAGPEDWR-DPALLVE------------------------------- 3281
Query: 340 GLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTP 399
L+ ++ ++Y P + ++ ++ I+ G L
Sbjct: 3282 -LINSEGVDVLHAY---------------PSMLQAFLEEEDAHRCTSLKRIVCGGEALPA 3325
Query: 400 HVETFLRVVACAHVLQGYGLTETC-AGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEME 458
+ +V A + YG TE T E +G P+ N +
Sbjct: 3326 --DLQQQVFAGLPLYNLYGPTEATITVTHWQCVEEGKDAVPIGRPIANRACYILD----- 3378
Query: 459 YDALSSTPRG---EVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG 500
+L P G E+ + G + GY+ R LT E V F G
Sbjct: 3379 -GSLEPVPVGALGELYLGGEGLARGYHNRPGLTAERFVPDPFVPG 3422
|
Length = 5163 |
| >gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 7e-04
Identities = 28/88 (31%), Positives = 38/88 (43%), Gaps = 18/88 (20%)
Query: 223 DICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKC--LLESVNEKLTSEDVYVSYLPLAHI 280
D I+YTSGTTG KGV + + G LE + ++DV + LPL H
Sbjct: 181 DTAAILYTSGTTGPSKGVCCPHAQF--YWWGRNSAEDLE-----IGADDVLYTTLPLFHT 233
Query: 281 -----FDRAI----EEVFISNGAAIGFW 299
F +A+ V +A GFW
Sbjct: 234 NALNAFFQALLAGATYVLEPRFSASGFW 261
|
Length = 542 |
| >gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 7e-04
Identities = 42/202 (20%), Positives = 81/202 (40%), Gaps = 22/202 (10%)
Query: 48 DVFRMAVERNPNNRML--GQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGK 105
D+F + P+ L G R + TY E+ + ++ + + G+
Sbjct: 7 DLFEAVADAVPDRVALVCGDRRL-----------TYAELEERANRLAHYLIAQGLGPGDH 55
Query: 106 CGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEML 165
GIY N E++ M V + + +++ S E + P +
Sbjct: 56 VGIYARNRIEYVEAMLGAFKARAVPVNVNYRYVEDELRYLLDDSDAVALVYEREFAPRVA 115
Query: 166 KTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDIC 225
+ P+ L+T+V V+ ++ + +++ L G ++ D + +D+
Sbjct: 116 EVLPRLP-KLRTLVV---VEDGSGNDLLPGAV---DYEDALAAGSPER-DFGERSPDDL- 166
Query: 226 TIMYTSGTTGDPKGVMVSNENI 247
++YT GTTG PKGVM E+I
Sbjct: 167 YLLYTGGTTGMPKGVMWRQEDI 188
|
Length = 533 |
| >gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 8e-04
Identities = 42/168 (25%), Positives = 72/168 (42%), Gaps = 24/168 (14%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCV--PLYDTL 137
TYKE+ +L K N ++ GVE+ + I+ PE + AL + PL++
Sbjct: 75 TYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFALLG--ALKNGAIVGPLFEAF 132
Query: 138 GAGAVEFIICHSGVSIAFVEEKKI---PEMLKTFPK-TTEHLKTIVSFSKVKPEQREEIE 193
AV + + E K + P +L+ P LK ++ + E EE
Sbjct: 133 MEEAV-----RDRLEDS--EAKVLITTPALLERKPADDLPSLKHVL----LVGEDVEEGP 181
Query: 194 KYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVM 241
++ ++ + +FD+ + D + YTSG+TG PKGV+
Sbjct: 182 GT----LDFNALME-QASDEFDIEWTDREDGAILHYTSGSTGKPKGVL 224
|
Length = 570 |
| >gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 9e-04
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 227 IMYTSGTTGDPKGVMVSNENIVTFI 251
++YTSG+TG PKGV + + N +
Sbjct: 110 VIYTSGSTGRPKGVAIEHRNAAALL 134
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449 |
| >gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 0.001
Identities = 22/79 (27%), Positives = 36/79 (45%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGA 139
TY E+ + V ++ + GV + + NCPE++ A N LG VP+ L
Sbjct: 5 TYAELAERVNRLAAGLLALGVRPGDRVALMLDNCPEFLRAWFALNKLGAVAVPINTALRG 64
Query: 140 GAVEFIICHSGVSIAFVEE 158
+ I+ HSG + V+
Sbjct: 65 EELAHILDHSGARLIVVDT 83
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421 |
| >gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.001
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 203 DEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGV 240
L+ G F + +D+ I++TSG+TG PKGV
Sbjct: 155 ATLLRDGAAAPFPMADLAPDDMAAILFTSGSTGTPKGV 192
|
Length = 552 |
| >gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.001
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 5/86 (5%)
Query: 194 KYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAG 253
L V S F LP +DI + Y+SG+T P+GV++++ ++ +
Sbjct: 149 NPLLHVLSHAWFK-ALPEADVALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRA 207
Query: 254 VKCLLESVNEKLTSEDVYVSYLPLAH 279
+ K+ D VS+LP H
Sbjct: 208 ISH----DGLKVRPGDRCVSWLPFYH 229
|
Length = 579 |
| >gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.001
Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 1/75 (1%)
Query: 206 LQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNEN-IVTFIAGVKCLLESVNEK 264
L L + D + + YTSG+T P GVMVS+ N I F +
Sbjct: 144 LDLDSPRGSDARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGV 203
Query: 265 LTSEDVYVSYLPLAH 279
+ VS+LP H
Sbjct: 204 PPPDTTVVSWLPFYH 218
|
Length = 578 |
| >gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 0.002
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 213 QFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNEN 246
F+ + +D+ I+YTSGTTG KG M+S+ N
Sbjct: 147 DFETVPRGADDLAAILYTSGTTGRSKGAMLSHGN 180
|
Length = 504 |
| >gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.002
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 13/58 (22%)
Query: 227 IMYTSGTTGDPKGVMVSNENI----VTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHI 280
I++TSGT+G PKGVM+S N+ F V ++ + ++ P+ HI
Sbjct: 140 ILFTSGTSGQPKGVMLSERNLQQTAHNF---------GVLGRVDAHSSFLCDAPMFHI 188
|
Length = 488 |
| >gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (94), Expect = 0.002
Identities = 31/106 (29%), Positives = 39/106 (36%), Gaps = 23/106 (21%)
Query: 412 HVLQGYGLTETCAGTFV--------SLPNEMSM-----IGTVGPPVPNVDV----CLESV 454
V+ YGLTE LP M G + +VDV ESV
Sbjct: 326 QVMHAYGLTEATGPVLFCEWQDEWNRLPENQQMELKARQGVSILGLADVDVKNKETQESV 385
Query: 455 PEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG 500
P GE+ +KGS++ GY K T E GW +TG
Sbjct: 386 PR------DGKTMGEIVIKGSSIMKGYLKNPKATSEAFKHGWLNTG 425
|
Length = 579 |
| >gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS) | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.002
Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 9/122 (7%)
Query: 385 GRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPV 444
+R I S PL P V + V + + TET A + P G++G P+
Sbjct: 207 SSLRHIASVGEPLNPEVVVWGEKVLGMPIHDTWWQTETGAIMIANYPGIPVKPGSMGRPL 266
Query: 445 PNVDVCLESVPEMEYDALSSTPR----GEVCVKGS--TVFSGYYKREDLTKEVMVDGWFH 498
P ++ +V E + D L+ GE+ +K ++F GY E+ VDGW+
Sbjct: 267 PGIEA---AVIERDGDGLTPVTGPGQVGELALKPGWPSMFRGYLGNEERYASSFVDGWYL 323
Query: 499 TG 500
TG
Sbjct: 324 TG 325
|
This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443 |
| >gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.002
Identities = 14/22 (63%), Positives = 17/22 (77%)
Query: 227 IMYTSGTTGDPKGVMVSNENIV 248
I++TSG+TG PKGVMV IV
Sbjct: 603 IIFTSGSTGRPKGVMVGQTAIV 624
|
Length = 1296 |
| >gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE) | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.002
Identities = 49/185 (26%), Positives = 73/185 (39%), Gaps = 45/185 (24%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGA 139
TY E+YD V ++ +R GV + + IY PE +I M L C +
Sbjct: 75 TYAELYDEVSRLAGVLRKLGVVKGDRVIIYMPMIPEAVIAM-------LACARI------ 121
Query: 140 GAVEFIICHSGVSIAF--------VEEKKIPEMLKTF-----PKTTEHLKTIV----SFS 182
GA+ HS V F +++ K P+++ T P K ++ S
Sbjct: 122 GAI-----HSVVFGGFASKELASRIDDAK-PKLIVTASFGIEPGRVVPYKPLLDKALELS 175
Query: 183 KVKPE-----QREEIEKYGLAVYS--WDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTG 235
+ KP R ++ W E + +PV+ D I+YTSGTTG
Sbjct: 176 QHKPHKVLILNRGQVPAPLKPGRDLDWAELMAKARPVDC-VPVES-TDPLYILYTSGTTG 233
Query: 236 DPKGV 240
PKGV
Sbjct: 234 KPKGV 238
|
PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607 |
| >gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.003
Identities = 18/101 (17%), Positives = 33/101 (32%), Gaps = 5/101 (4%)
Query: 79 KTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLG 138
T+ E+ + + N ++ GV + + PE + C LG +P LG
Sbjct: 1 WTFAELKEESDRAANFLKDLGVGRGDRVAVLLPRVPELWAVILGCIKLGAVFIPGTTQLG 60
Query: 139 AGAVEFIICHSGVSIAFVEEKKIPEMLKT-----FPKTTEH 174
+ + + +G + T PK H
Sbjct: 61 PKDIRYRLERAGARAIVTSADDPALLYFTSGTTGLPKMVLH 101
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430 |
| >gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.003
Identities = 30/122 (24%), Positives = 46/122 (37%), Gaps = 15/122 (12%)
Query: 386 RVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVP 445
R+R +S PL P V ++ + GYG TET A + P + G++G P+P
Sbjct: 200 RLREAVSAGEPLNPEVIERVKKAWGLTIRDGYGQTETTA-MIGNSPGQKVKPGSMGRPLP 258
Query: 446 NVDVCLESVPEMEYDALSSTPR---GEVCVKGST----VFSGYYKREDLTKEVMVDGWFH 498
V L D GE+ + + GY + T G++
Sbjct: 259 GYRVVL-------LDDEGKEIPVTEGEIALDLGDRPIGLMLGYMGDPEKTAAAFRGGYYR 311
Query: 499 TG 500
TG
Sbjct: 312 TG 313
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433 |
| >gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.003
Identities = 53/241 (21%), Positives = 89/241 (36%), Gaps = 39/241 (16%)
Query: 48 DVFRMAVERNPNNRML--GQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGK 105
DVF A R+P+ L + I +Y E+ + + GV +
Sbjct: 41 DVFEEAAARHPDRPALLFEDQSI-----------SYAELNARANRYAHWAAARGVGKGDV 89
Query: 106 CGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKI---P 162
+ N PE++ LG V L +T GAV + HS + V+ K +
Sbjct: 90 VALLMENRPEYLAAWLGLAKLGA-VVALLNTQQRGAV---LAHS---LNLVDAKHLIVGE 142
Query: 163 EMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENK-QFDLPVKKK 221
E+++ F + L + ++ E +++ + +
Sbjct: 143 ELVEAFEEARADLARPPRLWVAGGDTLDDPE-------GYEDLAAAAAGAPTTNPASRSG 195
Query: 222 ---NDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLA 278
D +YTSGTTG PK ++S+ + + G LL +LT +DV LPL
Sbjct: 196 VTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLL-----RLTPDDVLYCCLPLY 250
Query: 279 H 279
H
Sbjct: 251 H 251
|
Length = 600 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 39.9 bits (93), Expect = 0.004
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 9/76 (11%)
Query: 223 DICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282
++ ++YTSG+TG PKGV VS+ +V E L+ D + ++ + FD
Sbjct: 2147 NLAYVIYTSGSTGLPKGVAVSHGALVAHCQAAGERYE-----LSPADCELQFMSFS--FD 2199
Query: 283 RAIEEVFIS--NGAAI 296
A E+ F NGA +
Sbjct: 2200 GAHEQWFHPLLNGARV 2215
|
Length = 5163 |
| >gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 0.004
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Query: 222 NDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAH 279
+D ++YTSGTTG PKG +S + V S + L D + +PL H
Sbjct: 87 DDPAALIYTSGTTGLPKGCAISWRRTL-----VTSNPLSHDLNLQFPDRTYTCMPLYH 139
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468 |
| >gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.004
Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 219 KKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLA 278
++ D I++TSG+ G PKGV+ S+++++ + +K + + T D ++S LPL
Sbjct: 362 QQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIAD-----FTPNDRFMSALPLF 416
Query: 279 HIF 281
H F
Sbjct: 417 HSF 419
|
Length = 718 |
| >gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.004
Identities = 38/126 (30%), Positives = 60/126 (47%), Gaps = 20/126 (15%)
Query: 386 RVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSM-IGTVGPPV 444
R+R +++GA L + + +L+GYG+TE CA VS+ M+ GTVG +
Sbjct: 480 RLRYVVAGAEKLQESTKQLWQDKFGLRILEGYGVTE-CA-PVVSINVPMAAKPGTVGRIL 537
Query: 445 PNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKRE----------DLTKEVMVD 494
P +D L SVP +E G + +KG + +GY + E + + M
Sbjct: 538 PGMDARLLSVPGIEQG-------GRLQLKGPNIMNGYLRVEKPGVLEVPTAENARGEMER 590
Query: 495 GWFHTG 500
GW+ TG
Sbjct: 591 GWYDTG 596
|
Length = 718 |
| >gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.004
Identities = 14/24 (58%), Positives = 16/24 (66%)
Query: 217 PVKKKNDICTIMYTSGTTGDPKGV 240
V K+D I+YTSGTTG PKG
Sbjct: 95 RVDLKDDPAMIIYTSGTTGKPKGT 118
|
This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474 |
| >gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles | Back alignment and domain information |
|---|
Score = 39.3 bits (91), Expect = 0.004
Identities = 66/375 (17%), Positives = 108/375 (28%), Gaps = 88/375 (23%)
Query: 153 IAFVEEKKIPEML---KTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLG 209
IA++ ++L E ++ + + E+ + +
Sbjct: 88 IAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEG-------YLAYEEA 140
Query: 210 ENKQFDLPVKKKN--DICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTS 267
+ + C + YT+GTTG PKGV+ S+ +V + + +
Sbjct: 141 -LGEEA-DPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKD- 197
Query: 268 EDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWR--GDVKLLLEDIGELKPTIFCAVPRVL 325
V + +P+ H+ + GA D L+E T VP V
Sbjct: 198 --VVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVW 255
Query: 326 DRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGG 385
+ L +
Sbjct: 256 LALADYL--------------------------------------------ESTGHRLKT 271
Query: 386 RVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCA-GT-------FVSLPNEMSM- 436
RL++ G+A P V QGYGLTET SL E +
Sbjct: 272 LRRLVVGGSAA--PRSLIARFERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLT 329
Query: 437 ------IGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTK- 489
+ + D VP D EV +KG + GYY E+ T+
Sbjct: 330 LKAKTGLPIPLVRLRVADEEGRPVP---KDG--KALG-EVQLKGPWITGGYYGNEEATRS 383
Query: 490 EVMVDGWFHT-GMGV 503
+ DG+F T + V
Sbjct: 384 ALTPDGFFRTGDIAV 398
|
This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified in Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes an uncharacterized subgroup of FACS. Length = 509 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 507 | |||
| KOG1256 | 691 | consensus Long-chain acyl-CoA synthetases (AMP-for | 100.0 | |
| PLN02614 | 666 | long-chain acyl-CoA synthetase | 100.0 | |
| PLN02861 | 660 | long-chain-fatty-acid-CoA ligase | 100.0 | |
| PLN02430 | 660 | long-chain-fatty-acid-CoA ligase | 100.0 | |
| PTZ00342 | 746 | acyl-CoA synthetase; Provisional | 100.0 | |
| PLN02736 | 651 | long-chain acyl-CoA synthetase | 100.0 | |
| KOG1180 | 678 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| COG1022 | 613 | FAA1 Long-chain acyl-CoA synthetases (AMP-forming) | 100.0 | |
| PLN02387 | 696 | long-chain-fatty-acid-CoA ligase family protein | 100.0 | |
| PTZ00216 | 700 | acyl-CoA synthetase; Provisional | 100.0 | |
| KOG1177 | 596 | consensus Long chain fatty acid acyl-CoA ligase [L | 100.0 | |
| KOG1176 | 537 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| COG0318 | 534 | CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l | 100.0 | |
| COG0365 | 528 | Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l | 100.0 | |
| PTZ00237 | 647 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PRK12582 | 624 | acyl-CoA synthetase; Provisional | 100.0 | |
| PLN02860 | 563 | o-succinylbenzoate-CoA ligase | 100.0 | |
| PLN02654 | 666 | acetate-CoA ligase | 100.0 | |
| PRK08180 | 614 | feruloyl-CoA synthase; Reviewed | 100.0 | |
| PRK06334 | 539 | long chain fatty acid--[acyl-carrier-protein] liga | 100.0 | |
| PRK07788 | 549 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07529 | 632 | AMP-binding domain protein; Validated | 100.0 | |
| TIGR02188 | 625 | Ac_CoA_lig_AcsA acetate--CoA ligase. This model de | 100.0 | |
| PF00501 | 417 | AMP-binding: AMP-binding enzyme; InterPro: IPR0008 | 100.0 | |
| PRK13295 | 547 | cyclohexanecarboxylate-CoA ligase; Reviewed | 100.0 | |
| TIGR02316 | 628 | propion_prpE propionate--CoA ligase. This family c | 100.0 | |
| PRK04319 | 570 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PRK00174 | 637 | acetyl-CoA synthetase; Provisional | 100.0 | |
| COG1021 | 542 | EntE Peptide arylation enzymes [Secondary metaboli | 100.0 | |
| PLN02574 | 560 | 4-coumarate--CoA ligase-like | 100.0 | |
| PRK09274 | 552 | peptide synthase; Provisional | 100.0 | |
| PRK07656 | 513 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK03640 | 483 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| PRK13382 | 537 | acyl-CoA synthetase; Provisional | 100.0 | |
| PLN02246 | 537 | 4-coumarate--CoA ligase | 100.0 | |
| TIGR03208 | 538 | cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. | 100.0 | |
| PRK05605 | 573 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK05677 | 562 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK05857 | 540 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08008 | 517 | caiC putative crotonobetaine/carnitine-CoA ligase; | 100.0 | |
| PRK10524 | 629 | prpE propionyl-CoA synthetase; Provisional | 100.0 | |
| PRK06187 | 521 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK08314 | 546 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK06155 | 542 | crotonobetaine/carnitine-CoA ligase; Provisional | 100.0 | |
| PRK05852 | 534 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR02275 | 527 | DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot | 100.0 | |
| PLN02330 | 546 | 4-coumarate--CoA ligase-like 1 | 100.0 | |
| PRK05620 | 576 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK06839 | 496 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07638 | 487 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06087 | 547 | short chain acyl-CoA synthetase; Reviewed | 100.0 | |
| PRK07786 | 542 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07008 | 539 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07470 | 528 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07769 | 631 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK08316 | 523 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08315 | 559 | AMP-binding domain protein; Validated | 100.0 | |
| PRK12492 | 562 | long-chain-fatty-acid--CoA ligase; Provisional | 100.0 | |
| TIGR03098 | 515 | ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor | 100.0 | |
| PLN03102 | 579 | acyl-activating enzyme; Provisional | 100.0 | |
| PRK07059 | 557 | Long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK03584 | 655 | acetoacetyl-CoA synthetase; Provisional | 100.0 | |
| PRK12583 | 558 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK06060 | 705 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 100.0 | |
| PRK08043 | 718 | bifunctional acyl-[acyl carrier protein] synthetas | 100.0 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 100.0 | |
| TIGR01217 | 652 | ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym | 100.0 | |
| PRK12476 | 612 | putative fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK06145 | 497 | acyl-CoA synthetase; Validated | 100.0 | |
| PLN03052 | 728 | acetate--CoA ligase; Provisional | 100.0 | |
| PRK10946 | 536 | entE enterobactin synthase subunit E; Provisional | 100.0 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 100.0 | |
| TIGR02262 | 508 | benz_CoA_lig benzoate-CoA ligase family. Character | 100.0 | |
| PRK07514 | 504 | malonyl-CoA synthase; Validated | 100.0 | |
| PRK06188 | 524 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR03205 | 541 | pimA dicarboxylate--CoA ligase PimA. PimA, a membe | 100.0 | |
| PRK10252 | 1296 | entF enterobactin synthase subunit F; Provisional | 100.0 | |
| PRK06164 | 540 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06018 | 542 | putative acyl-CoA synthetase; Provisional | 100.0 | |
| PRK08751 | 560 | putative long-chain fatty acyl CoA ligase; Provisi | 100.0 | |
| PRK13383 | 516 | acyl-CoA synthetase; Provisional | 100.0 | |
| PLN02479 | 567 | acetate-CoA ligase | 100.0 | |
| PRK09088 | 488 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08974 | 560 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK13388 | 540 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 100.0 | |
| PRK06710 | 563 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK05851 | 525 | long-chain-fatty-acid--[acyl-carrier-protein] liga | 100.0 | |
| PRK06178 | 567 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 100.0 | |
| TIGR01734 | 502 | D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig | 100.0 | |
| PRK05691 | 4334 | peptide synthase; Validated | 100.0 | |
| PRK07867 | 529 | acyl-CoA synthetase; Validated | 100.0 | |
| PTZ00297 | 1452 | pantothenate kinase; Provisional | 100.0 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 100.0 | |
| PRK13390 | 501 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK08279 | 600 | long-chain-acyl-CoA synthetase; Validated | 100.0 | |
| PRK09192 | 579 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK05691 | 4334 | peptide synthase; Validated | 100.0 | |
| PRK13391 | 511 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK08162 | 545 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK04813 | 503 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| PRK07787 | 471 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 100.0 | |
| PRK07798 | 533 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK05850 | 578 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08276 | 502 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| TIGR01733 | 408 | AA-adenyl-dom amino acid adenylation domain. This | 100.0 | |
| PRK07768 | 545 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK12406 | 509 | long-chain-fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK09029 | 458 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| TIGR01923 | 436 | menE O-succinylbenzoate-CoA ligase. This model rep | 100.0 | |
| PRK07445 | 452 | O-succinylbenzoic acid--CoA ligase; Reviewed | 100.0 | |
| KOG1175 | 626 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| PLN03051 | 499 | acyl-activating enzyme; Provisional | 100.0 | |
| PRK07868 | 994 | acyl-CoA synthetase; Validated | 100.0 | |
| KOG1179 | 649 | consensus Very long-chain acyl-CoA synthetase/fatt | 100.0 | |
| PRK08308 | 414 | acyl-CoA synthetase; Validated | 100.0 | |
| COG1020 | 642 | EntF Non-ribosomal peptide synthetase modules and | 100.0 | |
| PRK07824 | 358 | O-succinylbenzoic acid--CoA ligase; Provisional | 99.95 | |
| TIGR03089 | 227 | conserved hypothetical protein TIGR03089. This pro | 99.94 | |
| KOG3628 | 1363 | consensus Predicted AMP-binding protein [General f | 99.94 | |
| TIGR02155 | 422 | PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet | 99.9 | |
| TIGR02372 | 386 | 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv | 99.86 | |
| TIGR03335 | 445 | F390_ftsA coenzyme F390 synthetase. This enzyme, c | 99.81 | |
| KOG3628 | 1363 | consensus Predicted AMP-binding protein [General f | 99.68 | |
| KOG1178 | 1032 | consensus Non-ribosomal peptide synthetase/alpha-a | 99.61 | |
| COG1541 | 438 | PaaK Coenzyme F390 synthetase [Coenzyme metabolism | 99.59 | |
| TIGR02304 | 430 | aden_form_hyp probable adenylate-forming enzyme. M | 99.15 | |
| PF04443 | 365 | LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR | 98.58 | |
| COG1541 | 438 | PaaK Coenzyme F390 synthetase [Coenzyme metabolism | 94.85 | |
| PF03321 | 528 | GH3: GH3 auxin-responsive promoter; InterPro: IPR0 | 94.11 | |
| PLN02620 | 612 | indole-3-acetic acid-amido synthetase | 91.52 | |
| TIGR03335 | 445 | F390_ftsA coenzyme F390 synthetase. This enzyme, c | 86.74 | |
| TIGR02155 | 422 | PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet | 86.03 | |
| TIGR03089 | 227 | conserved hypothetical protein TIGR03089. This pro | 80.78 |
| >KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-71 Score=554.71 Aligned_cols=479 Identities=49% Similarity=0.832 Sum_probs=430.7
Q ss_pred CceeecCcc--CCCCCCCCCCCCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCC
Q 010568 24 GPVYRSLFA--KDGFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVE 101 (507)
Q Consensus 24 ~~~~~~~~~--~~~~~~~~~~~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~ 101 (507)
+.+||+... .+.++.......|+++.|++.+..+|+.+++.....++ ..+.|+.+||.|..+++..++..|+++|++
T Consensus 53 ~~~~~s~~~~~~~~~~~~~~~~~T~~~~f~~~~~~~~~~p~LG~r~~~~-~~~~~~~~tY~q~~e~~~~~~~~l~~lG~~ 131 (691)
T KOG1256|consen 53 DGSRRSAVLPREELFSCPFDGPLTLYEGFRRSVEKSGNGPMLGTRVIVD-GKGPYEWLTYKQVYERAENLGSGLRKLGVK 131 (691)
T ss_pred CCceeeeeccCCCCCCCCCCCcccHHHHhhcchhccCCCCceeEEeccc-CCCCcEEEEHHHHHHHHHHHHHHHHHhCCC
Confidence 488999877 45556667899999999999999999999999884433 568899999999999999999999999999
Q ss_pred CCCEEEEEeCCchhhHHHHHHHHhcCCEEeeccCCCChHHHHHHHhhcCccEEEec-CCChhHHhhcCCC-CCCCccEEE
Q 010568 102 ERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVE-EKKIPEMLKTFPK-TTEHLKTIV 179 (507)
Q Consensus 102 ~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~-~~~~~~~~~~~~~-~~~~~~~v~ 179 (507)
+++.|+|+.-|++||+++.+||...|.++|||...++++++.++++++.+.++|++ ++....+.+.... ..+.++.++
T Consensus 132 ~~~~VGIy~~N~pEWiis~~a~~~~~~v~VplYdTlg~ea~~~Ii~~~e~~iv~vd~~~k~~~ll~~~~~~~~~~LK~iI 211 (691)
T KOG1256|consen 132 EDSKVGIYAFNRPEWIISEMACYAYSLVNVPLYDTLGAEAVHYIINHAEISIVFVDNAKKAEKLLEIKENDSLPSLKAII 211 (691)
T ss_pred CCceEEEeccCChhhHHhHHHHHhcCCEEeecccCCCHHHHHHHHHhcceeEEEEeCHHHHHHHHhhcccccCccceeEE
Confidence 99999999999999999999999999999999999999999999999999999999 4556666666654 358899999
Q ss_pred EecCCChhhHHHHhhcCceEeeHHHHHhccccCCCCCC-CCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhh
Q 010568 180 SFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLP-VKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLL 258 (507)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~ 258 (507)
.++.............++.+++|+++++.+.......+ +..+++.+.|+|||||||.||||++||.|++..+.......
T Consensus 212 ~~~~~~~~~~~~~~~~gv~v~S~~e~~~lG~~~~~~~~~~p~p~d~atI~yTSGTTG~PKGVMLTH~Niv~~v~~~~~~~ 291 (691)
T KOG1256|consen 212 QLDEPSDELKEKAENNGVEVYSWDEFEELGKKNQRKPRVPPKPDDLATICYTSGTTGNPKGVMLTHRNIVSDVAGIFFLS 291 (691)
T ss_pred EecCCchhhhhhhhcCCeEEEEHHHHHhhcccccCCCCCCCCccceEEEEEcCCCCCCCceEEEeccceeehhhhhhhhh
Confidence 99999998888888899999999999999976665553 77899999999999999999999999999999665432222
Q ss_pred hhccc-cCCCCcEEEEecChHHHHHHHHHHHHHHcCCEEEEecCCHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhh
Q 010568 259 ESVNE-KLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKIS 337 (507)
Q Consensus 259 ~~~~~-~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~v~l~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~ 337 (507)
..... ....+|++++++|+.|++....-...+..|+.+.++++|+..+.+.+++.+||.+.++|.+|+++.+.+.+...
T Consensus 292 ~~~~~~~~~~~dv~lSyLPLAHi~er~~~~~~~~~G~~IgF~~gD~~~l~~dlk~lkPT~f~~VPRVl~riye~I~~~~~ 371 (691)
T KOG1256|consen 292 AAENAKATVGDDVYLSYLPLAHIFERVVELYTFYIGAKIGFARGDILKLTDDLKELKPTVFPGVPRVLERIYEGIQKQVQ 371 (691)
T ss_pred hcccccccccCceEEEeCcHHHHHHHHHHHhHhhcccEEEEecCChHHHHHHHHHhCCcEEeccHhHHHHHHHHHHHHHh
Confidence 22222 23447999999999999999987777799999999999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHhHH-hhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhCCcEEee
Q 010568 338 SGGLLKKTLFNIAYSYKF-HNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQG 416 (507)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~~~v~~~ 416 (507)
..+.+++++|++|+.+|+ +.+..|..+. +++.+|++.++.++..+|.++|.+++|++|+++++..+++..+|++|+++
T Consensus 372 ~sgflkr~l~~~A~~~k~~~~~~~G~~~~-~~~~~D~lVf~KI~~~LGg~vr~~~sGaAPls~ev~~F~r~~~g~~v~eG 450 (691)
T KOG1256|consen 372 KSGFLKRKLFNFAMAYKLEHRLMKGKSRS-RDRFADKLVFHKIKQSLGGNVRLIISGAAPLSPEVLTFFRAALGCRVLEG 450 (691)
T ss_pred cchHHHHHHHHHHHHHHHHHHhhCCCCcc-cchHHHHHHHHHHHHHhcCceeEEEecCCCCCHHHHHHHHHhcCceeeec
Confidence 999999999999999999 7788886555 89999999999999999999999999999999999999999999999999
Q ss_pred cccccCccceeccCCCCCccCCcccccccCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhc-ccC
Q 010568 417 YGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDG 495 (507)
Q Consensus 417 YG~tE~~~~~~~~~~~~~~~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~-~dg 495 (507)
||+||+++.++...+++. ..+++|.|+|++++|++|+++-+..+.+ ..|||||||++||.||++||+.|++++ .||
T Consensus 451 YGlTEts~g~~~~~~~d~-~lgsvG~p~p~~~vKL~dvpe~ny~a~~--~~GEIcirG~~Vf~GYyK~p~~T~e~ideDG 527 (691)
T KOG1256|consen 451 YGLTETSAGTTLTLPGDN-VLGSVGPPVPGNEVKLVDVPEMNYDADG--SKGEICVRGPNVFMGYYKDPEKTAEAIDEDG 527 (691)
T ss_pred ccccccCCceEeccCCCC-CCCCcCCcccCceEEEechHHhCcCcCC--CcceEEEecchhceeccCChHHHhhhhcccc
Confidence 999999977777777666 5599999999999999999988888776 479999999999999999999999999 899
Q ss_pred ceeec-cEEEecC
Q 010568 496 WFHTG-MGVWEQL 507 (507)
Q Consensus 496 w~~TG-lg~~d~d 507 (507)
||+|| +|+||++
T Consensus 528 WLhTGDiG~~~p~ 540 (691)
T KOG1256|consen 528 WLHTGDIGEWDPN 540 (691)
T ss_pred ccccccceeECCC
Confidence 99999 9999975
|
|
| >PLN02614 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-67 Score=558.45 Aligned_cols=496 Identities=74% Similarity=1.273 Sum_probs=397.5
Q ss_pred ccccccCCCCCCCCceeecCccCCCCCCCCCCCCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHH
Q 010568 11 EKAKEASGGRPSIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIK 90 (507)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~ 90 (507)
...+..+.+.|.++++||+.....+++.+...+.|+.++|+++++++||++|+.+....++..+.++.+||+||.+++++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~ 91 (666)
T PLN02614 12 EEGKEGSDGRPSVGPVYRSIFAKDGFPNPIEGMDSCWDVFRMSVEKYPNNPMLGRREIVDGKPGKYVWQTYQEVYDIVIK 91 (666)
T ss_pred cccccCCCCCCCCCCcccCcccccccCCCCCCCCcHHHHHHHHHHhCCCCCeEEEecccCCCCCCcEEeEHHHHHHHHHH
Confidence 34445667889999999999777776666677889999999999999999999864110222244667999999999999
Q ss_pred HHHHHHHCCCCCCCEEEEEeCCchhhHHHHHHHHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCC
Q 010568 91 VVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPK 170 (507)
Q Consensus 91 ~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~ 170 (507)
+|++|+++|+++||+|+|+++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++.+....+......
T Consensus 92 lA~~L~~~Gv~~Gd~Vai~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~ 171 (666)
T PLN02614 92 LGNSLRSVGVKDEAKCGIYGANSPEWIISMEACNAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKKISELFKTCPN 171 (666)
T ss_pred HHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHhccCCCEEEECHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999987655544433332
Q ss_pred CCCCccEEEEecCCChhhHHHHhhcCceEeeHHHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHH
Q 010568 171 TTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTF 250 (507)
Q Consensus 171 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~ 250 (507)
....++.++.++.............+....++++++..........+...++++++|+|||||||.||||++||.+++..
T Consensus 172 ~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~I~yTSGTTG~PKGV~lth~nl~~~ 251 (666)
T PLN02614 172 STEYMKTVVSFGGVSREQKEEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMISNESIVTL 251 (666)
T ss_pred ccccceEEEEeCCCChHHhhhhhhcCcEEEEHHHHHhhcccCCCCCCCCCCCceEEEEEcCCCCCCCcEEEEecHHHHHH
Confidence 22336667776543211111111123345678887765432222223346799999999999999999999999999987
Q ss_pred HhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHHcCCEEEEecCCHHHHHHHhhhhCCeEEecCcHHHHHHHH
Q 010568 251 IAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYS 330 (507)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~v~l~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~ 330 (507)
+......+......+..+|++++++|++|++++...+.++..|+++++.++++..+++.|++++||+++++|++++.+..
T Consensus 252 ~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~ 331 (666)
T PLN02614 252 IAGVIRLLKSANAALTVKDVYLSYLPLAHIFDRVIEECFIQHGAAIGFWRGDVKLLIEDLGELKPTIFCAVPRVLDRVYS 331 (666)
T ss_pred HHHHHhhccccccCCCCCcEEEEeccHHHHHHHHHHHHHHHhCCEEEEeCCCHHHHHHHHHHhCCeEEEecHHHHHHHHH
Confidence 76643322111124678999999999999999877667788999999987799999999999999999999999999998
Q ss_pred HHHHhhhccchhHHHHHHHHHHhHHhhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhh-
Q 010568 331 GLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA- 409 (507)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~- 409 (507)
.+.......+.++..+++++.++++..+..+..+....+..+.+.++.++...++++|.+++||+++++.+. .+.+.+
T Consensus 332 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~Gga~l~~~~~-~~~~~~~ 410 (666)
T PLN02614 332 GLQKKLSDGGFLKKFVFDSAFSYKFGNMKKGQSHVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHVE-SFLRVVA 410 (666)
T ss_pred HHHHHHhccCHHHHHHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHH-HHHHHhc
Confidence 877777777788889999999988877776554445566777888888888888899999999999998765 455555
Q ss_pred CCcEEeecccccCccceeccCCCCCccCCcccccccCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhh
Q 010568 410 CAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTK 489 (507)
Q Consensus 410 ~~~v~~~YG~tE~~~~~~~~~~~~~~~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~ 489 (507)
++.+++.||+||+++.++...+......+++|+|+||++++|+|+++++..+++.|+.|||+|+||+++.|||++|+.|+
T Consensus 411 ~~~i~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~pg~evki~d~~~~~~~~~~~g~~GEl~vrGp~v~~GY~~~pe~T~ 490 (666)
T PLN02614 411 CCHVLQGYGLTESCAGTFVSLPDELDMLGTVGPPVPNVDIRLESVPEMEYDALASTPRGEICIRGKTLFSGYYKREDLTK 490 (666)
T ss_pred CCCEEeeCchHhhhhheeeeccccCCcCCcccCcCCceEEEEeeecccCcccCCCCCCceEEEcCCcccccccCCHHHhh
Confidence 58999999999998766554444333458999999999999998555444455667999999999999999999999999
Q ss_pred hhcccCceeec-cEEEecC
Q 010568 490 EVMVDGWFHTG-MGVWEQL 507 (507)
Q Consensus 490 ~~~~dgw~~TG-lg~~d~d 507 (507)
++|.||||+|| +|++|+|
T Consensus 491 ~~f~dGw~~TGDlg~~d~d 509 (666)
T PLN02614 491 EVLIDGWLHTGDVGEWQPN 509 (666)
T ss_pred hhhccCCcccceEEEEcCC
Confidence 99999999999 9999986
|
|
| >PLN02861 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-65 Score=547.22 Aligned_cols=490 Identities=58% Similarity=1.044 Sum_probs=395.4
Q ss_pred cCCCCCCCCceeecCccCCCCCCCCCCCCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHH
Q 010568 16 ASGGRPSIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAI 95 (507)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L 95 (507)
.+.++|.++++||+....+.+...++...|+.++|++.++++|+++|+......++..+.++++||+||.++++++|++|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~~~~~~p~~~al~~~~~~~~~~g~~~~~Ty~el~~~v~~lA~~L 94 (660)
T PLN02861 15 ATGGKPSAGPVYRSIYAKDGLLDLPADIDSPWQFFSDAVKKYPNNQMLGRRQVTDSKVGPYVWLTYKEVYDAAIRIGSAI 94 (660)
T ss_pred CCCCCCCCCCcccccccccccccCCCCCCCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCceEEEHHHHHHHHHHHHHHH
Confidence 45578999999999977777766667889999999999999999999976311133345677899999999999999999
Q ss_pred HHCCCCCCCEEEEEeCCchhhHHHHHHHHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCc
Q 010568 96 RTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHL 175 (507)
Q Consensus 96 ~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~ 175 (507)
.++|+++||+|+|+++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++.+....+..........+
T Consensus 95 ~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~v~~~~~~~~~~~~~~~~~~~~l 174 (660)
T PLN02861 95 RSRGVNPGDRCGIYGSNCPEWIIAMEACNSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKISSILSCLPKCSSNL 174 (660)
T ss_pred HHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHcCCCCEEEECHHHHHHHHHhhhhCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999998766555444333222356
Q ss_pred cEEEEecCCChhhHHHHhhcCceEeeHHHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhh
Q 010568 176 KTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVK 255 (507)
Q Consensus 176 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~ 255 (507)
+.++.+++............+....+|+++...... ....+...++++++|+|||||||.||||++||.+++..+....
T Consensus 175 ~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~dd~a~i~yTSGTTG~PKGV~lth~~l~~~~~~~~ 253 (660)
T PLN02861 175 KTIVSFGDVSSEQKEEAEELGVSCFSWEEFSLMGSL-DCELPPKQKTDICTIMYTSGTTGEPKGVILTNRAIIAEVLSTD 253 (660)
T ss_pred EEEEEECCCChhhhhhhhcCCcEEEEHHHHHHhCcc-cCCCCccCCCceEEEEecCCCCCCCCEEEEecHHHHHHHHHHH
Confidence 677777643221111111123345678887754422 1223345689999999999999999999999999998876644
Q ss_pred hhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHHcCCEEEEecCCHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHh
Q 010568 256 CLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQK 335 (507)
Q Consensus 256 ~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~v~l~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~ 335 (507)
..+......+..+|++++++|++|++++...+.+++.|+++++.+.++..+++.|++++||+++++|.+++.+.......
T Consensus 254 ~~~~~~~~~~~~~d~~l~~lPl~H~~~~~~~~~~l~~G~~v~~~~~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~ 333 (660)
T PLN02861 254 HLLKVTDRVATEEDSYFSYLPLAHVYDQVIETYCISKGASIGFWQGDIRYLMEDVQALKPTIFCGVPRVYDRIYTGIMQK 333 (660)
T ss_pred hccccccccCCCCCEEEEECcHHHHHHHHHHHHHHHhCCEEEEeCCCHHHHHHHHHHhCCcEEeechHHHHHHHHHHHHH
Confidence 32211111246789999999999999987766789999999988779999999999999999999999999999888888
Q ss_pred hhccchhHHHHHHHHHHhHHhhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhC-CcEE
Q 010568 336 ISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVAC-AHVL 414 (507)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~-~~v~ 414 (507)
....+.+++.+|+++..+++..+..+.......+..+.++++.++..+++++|.+++||+++++++.+ |.+.++ ..++
T Consensus 334 ~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lg~~lr~~~~Ggapl~~~~~~-~~~~~~~~~l~ 412 (660)
T PLN02861 334 ISSGGMLRKKLFDFAYNYKLGNLRKGLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVEE-FLRVTSCSVLS 412 (660)
T ss_pred HhccCHHHHHHHHHHHHHHHHHHhcCCCCcCccHhHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHH-HHHHHcCCCee
Confidence 88888899999999999998888766444444567788889999999999999999999999999865 555565 4799
Q ss_pred eecccccCccceeccCCCCCccCCcccccccCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhccc
Q 010568 415 QGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVD 494 (507)
Q Consensus 415 ~~YG~tE~~~~~~~~~~~~~~~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~d 494 (507)
+.||+||+++.++..........+++|+|+||++++|+|+++.+......++.|||+|+||+++.|||++|+.|+++|.|
T Consensus 413 ~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~p~~ev~i~d~~~~g~~~~~~~~~GEi~vrGp~v~~GY~~~pe~T~~~f~d 492 (660)
T PLN02861 413 QGYGLTESCGGCFTSIANVFSMVGTVGVPMTTIEARLESVPEMGYDALSDVPRGEICLRGNTLFSGYHKRQDLTEEVLID 492 (660)
T ss_pred EecchhhhhhceeecccccCCCCCCccCccCceEEEEEEccccCcccCCCCCceeEEEcCCcccccccCCHHHHHhhhhc
Confidence 99999999876665444333345899999999999999844433222234468999999999999999999999999999
Q ss_pred Cceeec-cEEEecC
Q 010568 495 GWFHTG-MGVWEQL 507 (507)
Q Consensus 495 gw~~TG-lg~~d~d 507 (507)
|||+|| +|++|+|
T Consensus 493 Gw~~TGDlg~~d~d 506 (660)
T PLN02861 493 GWFHTGDIGEWQPN 506 (660)
T ss_pred cCcccCceEEECCC
Confidence 999999 9999986
|
|
| >PLN02430 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-64 Score=538.63 Aligned_cols=500 Identities=49% Similarity=0.934 Sum_probs=404.4
Q ss_pred eecccccccCCCCCCCCceeecCccCCCCCCCCCCCCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHH
Q 010568 8 VEVEKAKEASGGRPSIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDL 87 (507)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~ 87 (507)
.+++.....+.++|.++++||+....+......+.++|+.++|++.++++||++|+......++..+.++.+||+||.++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~ 85 (660)
T PLN02430 6 AQVEEGVKGKDGKPSVGPVYRNLLSKKGFPPIDSDITTAWDIFSKSVEKYPDNKMLGWRRIVDGKVGPYMWKTYKEVYEE 85 (660)
T ss_pred eeecccCCCCCCCCCCCCccccccccccccCCCCCCCCHHHHHHHHHHhCCCCceEEEEecCCCCCCCcEEEEHHHHHHH
Confidence 55554444445789999999998765666555678999999999999999999999764111233345677899999999
Q ss_pred HHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHHHHHHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhc
Q 010568 88 VIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKT 167 (507)
Q Consensus 88 ~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~ 167 (507)
++++|++|.+.|+++||+|+|+++|+++|+++.+||+++|++++|+++.++.+++.++++.++++++|++..........
T Consensus 86 v~~lA~~L~~~Gv~~gd~V~i~~~n~~ew~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~ 165 (660)
T PLN02430 86 VLQIGSALRASGAEPGSRVGIYGSNCPQWIVAMEACAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKIKELLEP 165 (660)
T ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEeccCCCHHHHHHHHhccCCCEEEECHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987544333322
Q ss_pred CCCCCCCccEEEEecCCChhhHHHHhhcCceEeeHHHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHH
Q 010568 168 FPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENI 247 (507)
Q Consensus 168 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l 247 (507)
.....+.++.++.+++............+....+|++++..+...........++++++|+|||||||.||||.+||.++
T Consensus 166 ~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~~~ 245 (660)
T PLN02430 166 DCKSAKRLKAIVSFTSVTEEESDKASQIGVKTYSWIDFLHMGKENPSETNPPKPLDICTIMYTSGTSGDPKGVVLTHEAV 245 (660)
T ss_pred hcccCCCceEEEEECCCChHHhhhhhcCCcEEEEHHHHHHhhccCCCCCCCcCcCceEEEEECCCCCCCCCEEEeecHHH
Confidence 21222456778877654322111111223456789888866543332233446899999999999999999999999999
Q ss_pred HHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHHcCCEEEEecCCHHHHHHHhhhhCCeEEecCcHHHHH
Q 010568 248 VTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDR 327 (507)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~v~l~~~~~~~~~~~i~~~~vt~l~~~P~~l~~ 327 (507)
+..+.............+..+|++++++|++|.++....+.++..|+++++...++..+++.+++++||++.++|.+++.
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~i~~~~~~~~~l~~~l~~~~pt~~~~vP~~~~~ 325 (660)
T PLN02430 246 ATFVRGVDLFMEQFEDKMTHDDVYLSFLPLAHILDRMIEEYFFRKGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFER 325 (660)
T ss_pred HHHHHHHHhhccccccCCCCCCEEEEeCcHHHHHHHHHHHHHHHcCCEEEEeCCChhhHHHHHHHhCCcEEEecHHHHHH
Confidence 98876643221111124678899999999999999887777799999999887788999999999999999999999999
Q ss_pred HHHHHHHhhhccchhHHHHHHHHHHhHHhhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHH
Q 010568 328 IYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRV 407 (507)
Q Consensus 328 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~ 407 (507)
+.+.........+.+++.+|.++..++...+..+.......+.++.+.++.++..+|+++|.+++||+++++++.++++.
T Consensus 326 l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~i~~~~G~~lr~~~~gga~l~~~~~~~~~~ 405 (660)
T PLN02430 326 IHEGIQKALQELNPRRRLIFNALYKYKLAWMNRGYSHKKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIEEFLRV 405 (660)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCeEEEEEECCCCCCHHHHHHHHH
Confidence 99988877777788899999999999988887654434445677888899999999999999999999999999777766
Q ss_pred hhCCcEEeecccccCccceeccCCCCCccCCcccccccCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhh
Q 010568 408 VACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDL 487 (507)
Q Consensus 408 ~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~ 487 (507)
..++.+++.||+||+++.++...+.....++++|+|.||++++|+|+++.+..+.+.+..|||+|+||+++.|||++|+.
T Consensus 406 ~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~~~~evki~d~~~~g~~~~~~~~~GEi~vrg~~v~~GY~~~~e~ 485 (660)
T PLN02430 406 TSCAFVVQGYGLTETLGPTTLGFPDEMCMLGTVGAPAVYNELRLEEVPEMGYDPLGEPPRGEICVRGKCLFSGYYKNPEL 485 (660)
T ss_pred hcCCCeeeecchhhhhhceEeeccccCCCCCCccCCCCceEEEEEEcCCcCcccCCCCCcceEEecCCCccccccCChHH
Confidence 44578999999999988777665544444689999999999999985555545556567899999999999999999999
Q ss_pred hhhhcccCceeec-cEEEecC
Q 010568 488 TKEVMVDGWFHTG-MGVWEQL 507 (507)
Q Consensus 488 ~~~~~~dgw~~TG-lg~~d~d 507 (507)
|++.|.||||+|| +|++|+|
T Consensus 486 t~~~~~dGw~~TGDig~~d~d 506 (660)
T PLN02430 486 TEEVMKDGWFHTGDIGEILPN 506 (660)
T ss_pred hhhhhhccceeccceEEECCC
Confidence 9999999999999 9999976
|
|
| >PTZ00342 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-63 Score=529.94 Aligned_cols=467 Identities=24% Similarity=0.424 Sum_probs=375.6
Q ss_pred CCCceeecCccCCCCCCCCCCCCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHH---C
Q 010568 22 SIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRT---C 98 (507)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~---~ 98 (507)
++|.+||....... ......+|+.++|.++++++||++|+... + .+..++.+||+||.++++++|++|.+ +
T Consensus 41 ~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~~~~p~~~Al~~~---~-~g~~~~~~Ty~el~~~v~~~A~~L~~~~~~ 114 (746)
T PTZ00342 41 NESSVYCMKDHKKK--SSLYVYKHIMKLLLEKYKLNNNKIAIVEH---S-CGEPQNYITYGNFFKKVLSFSHSLNTYEGK 114 (746)
T ss_pred CCCCceecCchhhc--ccccccchHHHHHHHHHhhcCCceeEecc---C-CCCCceeeeHHHHHHHHHHHHHHHHHHhhc
Confidence 66669997766555 55577899999999999999999999753 2 22246789999999999999999997 4
Q ss_pred CCCCC-----------CEEEEEeCCchhhHHHHHHHHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhc
Q 010568 99 GVEER-----------GKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKT 167 (507)
Q Consensus 99 gv~~g-----------d~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~ 167 (507)
|+++| |+|+|+++|+++|+++.+||+++|+++||+++.++.+++.++++++++++||++.+....+...
T Consensus 115 Gv~~g~~~~~~~~g~~d~V~i~~~N~~ew~~~~lA~~~~Gav~Vpl~~~~~~~el~~il~~s~~~~lv~~~~~~~~l~~~ 194 (746)
T PTZ00342 115 GIPEKKYNEEQNNGKFKLLGLYGSNSINWLVADLACMLSGVTTLVMHSKFSIDVIVDILNETKLEWLCLDLDLVEGLLER 194 (746)
T ss_pred CCCcCccccccccccccEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHhcCCCCEEEEcHHHHHHHHHh
Confidence 99998 9999999999999999999999999999999999999999999999999999987766666555
Q ss_pred CCCCCCCccEEEEecCCChhh---------------------------------------------------------HH
Q 010568 168 FPKTTEHLKTIVSFSKVKPEQ---------------------------------------------------------RE 190 (507)
Q Consensus 168 ~~~~~~~~~~v~~~~~~~~~~---------------------------------------------------------~~ 190 (507)
.... +.++.+++++...... ..
T Consensus 195 ~~~~-~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 273 (746)
T PTZ00342 195 KNEL-PHLKKLIILDTLIKSKEININKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKDLKE 273 (746)
T ss_pred hccC-CCceEEEEECCCCcccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhHHHHH
Confidence 4433 6778888886521100 00
Q ss_pred HHhhcCceEeeHHHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcE
Q 010568 191 EIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDV 270 (507)
Q Consensus 191 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~ 270 (507)
.....+.....|+++..... .........++++++|+|||||||.||||++||+++++.+....... .......++
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dd~a~IiYTSGTTG~PKGVmlTH~nl~~~~~~~~~~~---~~~~~~~d~ 349 (746)
T PTZ00342 274 KAKKLGISIILFDDMTKNKT-TNYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHS---IFKKYNPKT 349 (746)
T ss_pred HhhcCCCEEEEHHHHHhhcc-cCCCCCCCCccceEEEEEcCCCCCCCCEEEEccHHHHHHHHHHhhcc---cccCCCCCe
Confidence 00011223345555544321 12223345689999999999999999999999999998876543211 111235589
Q ss_pred EEEecChHHHHHHHHHHHHHHcCCEEEEecCCHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHH
Q 010568 271 YVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIA 350 (507)
Q Consensus 271 ~l~~~pl~h~~g~~~~~~~l~~G~~v~l~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 350 (507)
+++++|++|++++...+.+++.|+++++.+.++..+++.|++++||+++++|.+++++.+.........+.+++.+|+++
T Consensus 350 ~ls~LPL~Hi~~~~~~~~~l~~G~~i~~~~~~~~~l~~di~~~~pT~~~~VP~v~~~i~~~i~~~~~~~~~~~~~~~~~a 429 (746)
T PTZ00342 350 HLSYLPISHIYERVIAYLSFMLGGTINIWSKDINYFSKDIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLVKKI 429 (746)
T ss_pred EEEeCcHHHHHHHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHhCCcEEEchHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 99999999999998888889999999998779999999999999999999999999999887777777778889999999
Q ss_pred HHhHHhhhhcCCCCCCCchhhhHH--hHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhCCcEEeecccccCccceec
Q 010568 351 YSYKFHNLKKGHKHVEASPIADKI--VFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFV 428 (507)
Q Consensus 351 ~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~~~v~~~YG~tE~~~~~~~ 428 (507)
...+....... ..+.++.+ .++.++...++++|.+++||+++++++.++++..+|++++++||+||+++.++.
T Consensus 430 ~~~~~~~~~~~-----~~~~~~~~~~v~~kir~~lg~~lr~~~sGGapl~~~~~~~~~~~~g~~i~~gYGlTEt~~~~~~ 504 (746)
T PTZ00342 430 LSLRKSNNNGG-----FSKFLEGITHISSKIKDKVNPNLEVILNGGGKLSPKIAEELSVLLNVNYYQGYGLTETTGPIFV 504 (746)
T ss_pred HHHHHHhhcCC-----cchHHHHHHHHHHHHHHhhCCCeEEEEEcCCCCCHHHHHHHHHhcCCCEEEeeccCcccceeee
Confidence 98877654321 12333333 578888888999999999999999999999998889999999999999877666
Q ss_pred cCCCCCccCCcccccc-cCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhc-ccCceeec-cEEEe
Q 010568 429 SLPNEMSMIGTVGPPV-PNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTG-MGVWE 505 (507)
Q Consensus 429 ~~~~~~~~~~s~G~p~-pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~-~dgw~~TG-lg~~d 505 (507)
..... ..++++|+|+ ||++++|+|+++..... .++.|||+++||+++.|||++|+.|+++| .||||+|| +|++|
T Consensus 505 ~~~~~-~~~gsvG~p~~pg~e~ki~d~~~~~~~~--~~~~GEl~vrGp~v~~GY~~~pe~T~~~f~~dGW~~TGDig~~d 581 (746)
T PTZ00342 505 QHADD-NNTESIGGPISPNTKYKVRTWETYKATD--TLPKGELLIKSDSIFSGYFLEKEQTKNAFTEDGYFKTGDIVQIN 581 (746)
T ss_pred ccCCC-CCcccccCcCCCcEEEEEecccccccCC--CCCceEEEEecCcccccccCChhhhhhhcCcCCcccCCcEEEEC
Confidence 55543 3458999998 99999999855433222 23579999999999999999999999999 69999999 99999
Q ss_pred cC
Q 010568 506 QL 507 (507)
Q Consensus 506 ~d 507 (507)
+|
T Consensus 582 ~d 583 (746)
T PTZ00342 582 KN 583 (746)
T ss_pred CC
Confidence 86
|
|
| >PLN02736 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-63 Score=529.28 Aligned_cols=481 Identities=38% Similarity=0.674 Sum_probs=389.7
Q ss_pred CCCCCCCCceeecCccCCCCCC---CCCCCCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHH
Q 010568 17 SGGRPSIGPVYRSLFAKDGFPA---PIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVN 93 (507)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~ 93 (507)
-+...+.+.+||+.....++.. ..+...|+.++|+++++++||++|+.+....++..+.++.+||+||.++++++|+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~lTy~el~~~v~~lA~ 93 (651)
T PLN02736 14 EKLQTGKWNVYRSARSPLKLVSRFPDHPEIGTLHDNFVYAVETFRDYKYLGTRIRVDGTVGEYKWMTYGEAGTARTAIGS 93 (651)
T ss_pred CCCCCCCCCeecCccccccccccCCCCCCCCCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCcEEEEHHHHHHHHHHHHH
Confidence 3444589999998755544433 4567789999999999999999999643100333345778999999999999999
Q ss_pred HHHHCCCCCCCEEEEEeCCchhhHHHHHHHHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCC
Q 010568 94 AIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTE 173 (507)
Q Consensus 94 ~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~ 173 (507)
+|+++|+++||+|+|+++|+++|+++++||+++|++++|+++.++.+++.++++.++++++|++.+....+....... +
T Consensus 94 ~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~l~~~~~~~~~~~~~~~~~-~ 172 (651)
T PLN02736 94 GLVQHGIPKGACVGLYFINRPEWLIVDHACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQTLNTLLSCLSEI-P 172 (651)
T ss_pred HHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEeecCCCHHHHHHHHhccCCCEEEECHHHHHHHHHHhhcC-C
Confidence 999999999999999999999999999999999999999999999999999999999999999987666555544433 5
Q ss_pred CccEEEEecCCChhhHHHHhhcCceEeeHHHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhh
Q 010568 174 HLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAG 253 (507)
Q Consensus 174 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~ 253 (507)
.++.+++++.............+.....|++++..............++++++|+|||||||.||+|++||+++...+..
T Consensus 173 ~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~IlyTSGTTG~PKGV~lsh~~l~~~~~~ 252 (651)
T PLN02736 173 SVRLIVVVGGADEPLPSLPSGTGVEIVTYSKLLAQGRSSPQPFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVAG 252 (651)
T ss_pred CceEEEEECCCchhhhhhhccCCcEEEEHHHHHHhcccCCCCCCCCCccceEEEEEcCCCCCCCcEEEEecHHHHHHHHH
Confidence 66677766532211111111123456788888765432222233456899999999999999999999999999998887
Q ss_pred hhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHHcCCEEEEecCCHHHHHHHhhhhCCeEEecCcHHHHHHHHHHH
Q 010568 254 VKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLN 333 (507)
Q Consensus 254 ~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~v~l~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~ 333 (507)
+.. ...+.++|++++.+|++|.+++...+.++..|+++++.+.++..+++.|+++++|+++++|.+++.+.+...
T Consensus 253 ~~~-----~~~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~i~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~ 327 (651)
T PLN02736 253 SSL-----STKFYPSDVHISYLPLAHIYERVNQIVMLHYGVAVGFYQGDNLKLMDDLAALRPTIFCSVPRLYNRIYDGIT 327 (651)
T ss_pred HHh-----ccCCCCCCEEEEeCCHHHHHHHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHhCCcEEecchHHHHHHHHHHH
Confidence 543 336788999999999999999988888899999999988889999999999999999999999999999888
Q ss_pred HhhhccchhHHHHHHHHHHhHHhhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhCCcE
Q 010568 334 QKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHV 413 (507)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~~~v 413 (507)
......+.+++.++.+++..+...+..+. ...+.++++.++.++..+++++|.+++||+++++++.+++++.+|+++
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~lg~~lr~~~~gGa~l~~~~~~~~~~~~g~~~ 404 (651)
T PLN02736 328 NAVKESGGLKERLFNAAYNAKKQALENGK---NPSPMWDRLVFNKIKAKLGGRVRFMSSGASPLSPDVMEFLRICFGGRV 404 (651)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHHHcCC---CCCchHHHHHHHHHHHHhcCcEEEEEeCCCCCCHHHHHHHHHHhCCCe
Confidence 88888888999999998888766655431 123456777788888888889999999999999999999998889999
Q ss_pred EeecccccCccceeccCCCCCccCCcccccccCceEEEeecCCCccc-cCCCCCCceEEEecCCccccccCChhhhhhhc
Q 010568 414 LQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYD-ALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM 492 (507)
Q Consensus 414 ~~~YG~tE~~~~~~~~~~~~~~~~~s~G~p~pg~~i~ivd~~~~~~~-~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~ 492 (507)
++.||+||+++.++...... ...+++|+|+||++++|+|.+++... ....++.|||+|+||+++.|||++|+.+++.|
T Consensus 405 ~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~pg~~v~i~d~~~~~~~~~~~~~~~GEl~vrgp~v~~GY~~~~~~t~~~~ 483 (651)
T PLN02736 405 LEGYGMTETSCVISGMDEGD-NLSGHVGSPNPACEVKLVDVPEMNYTSEDQPYPRGEICVRGPIIFKGYYKDEVQTREVI 483 (651)
T ss_pred EEEechHHhchheeccCCCC-CCCCccCCccCceEEEEEEccccCcccCCCCCCCceEEecCCccccccccCHHHHHhhh
Confidence 99999999987766555443 34589999999999999983332211 11123579999999999999999999999999
Q ss_pred -ccCceeec-cEEEecC
Q 010568 493 -VDGWFHTG-MGVWEQL 507 (507)
Q Consensus 493 -~dgw~~TG-lg~~d~d 507 (507)
.||||+|| +|++|+|
T Consensus 484 ~~dgw~~TGDlg~~d~d 500 (651)
T PLN02736 484 DEDGWLHTGDIGLWLPG 500 (651)
T ss_pred ccCCCeeccceEEEcCC
Confidence 69999999 9999986
|
|
| >KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-62 Score=468.02 Aligned_cols=481 Identities=35% Similarity=0.627 Sum_probs=418.5
Q ss_pred CCCCCCCceeecCccCCCCCCCC-CCCCCHHHHHHHHHHhCCCCCceeeEeec--------cCc------CCceEEEeHH
Q 010568 18 GGRPSIGPVYRSLFAKDGFPAPI-PGMESCWDVFRMAVERNPNNRMLGQREIV--------DGK------AGKYVWKTYK 82 (507)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~tl~~~l~~~~~~~pd~~a~~~~~~~--------~~~------~~~~~~~Ty~ 82 (507)
.+.+.++.+||+....+++-.++ +...|+.++|++.++++.++.++-+++++ ||+ -+.|..+||.
T Consensus 14 ~~n~~e~~p~Rnv~~~~~L~~~~~~g~~Tl~~~~~~~~~k~g~~~~mGtR~li~~h~ek~~dGK~f~k~~Lg~Y~w~sy~ 93 (678)
T KOG1180|consen 14 AANEHETAPYRNVRSFDGLVSPPNPGASTLYELFEECVKKFGKKDAMGTRELIKEHEEKQVDGKTFEKYELGDYKWMSYN 93 (678)
T ss_pred CCCCCCCccccccccCCCccCCCCCCcccHHHHHHHHHHhcCCCccccHHHHHHHHhhccCCCeEEEEEeccceeeecHH
Confidence 33457899999998776666655 88999999999999999999998765442 222 3457789999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCE-EEEEeCCchhhHHHHHHHHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCCh
Q 010568 83 EVYDLVIKVVNAIRTCGVEERGK-CGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKI 161 (507)
Q Consensus 83 el~~~~~~~a~~L~~~gv~~gd~-V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~ 161 (507)
|+..++.+++++|.++|++++++ |+|+++.+.+|+++++||++.+..+|.+...+..+.+-+-|..++++.+|++.+.+
T Consensus 94 ev~~~~~~~gsGL~~lG~k~~e~k~~iFa~TraeWm~ta~gC~~q~ipvVT~Y~TLGeeal~hsl~Et~~~~i~T~~~LL 173 (678)
T KOG1180|consen 94 EVYERVHNFGSGLVKLGLKPKETKIAIFAETRAEWMITAQGCFSQNIPVVTAYATLGEEALIHSLNETESTAIFTDSELL 173 (678)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCeEEEEecchHHHHHHHHHHHhcCCeEEEEehhcChhhhhhhhccccceEEEeCHHHH
Confidence 99999999999999999998877 99999999999999999999999999999999999999999999999999999988
Q ss_pred hHHhhcCCCCCCCccEEEEecCC----ChhhHHHHhhcCceEeeHHHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCC
Q 010568 162 PEMLKTFPKTTEHLKTIVSFSKV----KPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDP 237 (507)
Q Consensus 162 ~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~p 237 (507)
..+...+... ..++.+|.++.. ............+.++++++++..+.....+..+..++|+|+|||||||||.|
T Consensus 174 ~kl~~~l~~~-~~vk~II~~d~id~~~~~~~v~~i~~p~i~i~Sf~~v~~lG~~~~~~~~~P~p~Dia~IMYTSGSTG~P 252 (678)
T KOG1180|consen 174 PKLKAPLKQA-KTVKHIIYFDPIDYDAAKDDVNSIVRPDIKIISFDDVEKLGKENEIPPHPPKPSDIACIMYTSGSTGLP 252 (678)
T ss_pred HHHHHHHhcc-CceeEEEEecCCCCccchhhhhhhccCCeEEEEHHHHHhhCCcCCCCCCCCCCCceEEEEEcCCCCCCC
Confidence 8766665554 889999999843 22222222235678999999999987765444455889999999999999999
Q ss_pred ceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHHcCCEEEEecC-C--------HHHHHH
Q 010568 238 KGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRG-D--------VKLLLE 308 (507)
Q Consensus 238 K~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~v~l~~~-~--------~~~~~~ 308 (507)
|||+++|.|+++.+......+ ..+++.|+++.++||.|++.+.+-+.+++.|+.+-..+. + ..+--.
T Consensus 253 KGVml~H~NiVA~~~G~~~~v----~~lg~~D~yi~yLPLAHIlEl~aE~~~ft~G~~iGY~S~~TLtdts~ki~kg~kG 328 (678)
T KOG1180|consen 253 KGVMLTHSNIVAGVTGVGENV----PELGPKDRYIAYLPLAHILELTAELVCFTWGGRIGYSSPLTLTDTSSKIKKGCKG 328 (678)
T ss_pred ceEEEecccHHhhhhhhcccC----cccCCCceEEEechHHHHHHHHHHHHHHhhCCEeecCCcceecccchhhccCCcC
Confidence 999999999999998865443 268999999999999999999999999999999887643 1 122223
Q ss_pred HhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhHHhhhhcCCCCCCCchhhhHHhHHHHHHHcCCceE
Q 010568 309 DIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVR 388 (507)
Q Consensus 309 ~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr 388 (507)
.+..+|||++.++|.+|+++-+....+..+.+.+.+.+|.+++..|+..++.. ...++.++.+.|+..|...|.+||
T Consensus 329 D~~~lkPTiM~~VpAV~drVrKgVl~kV~~~~~~~k~lF~~aY~~K~~~~~~~---g~~s~~ld~lVFkKIr~~lGG~lR 405 (678)
T KOG1180|consen 329 DLTELKPTIMAAVPAVMDRVRKGVLSKVNAMPGLQKKLFWTAYERKLSLIERN---GPGSPLLDALVFKKIRALLGGNLR 405 (678)
T ss_pred ccccccchhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhcc---CCchhhHHHHHHHHHHHHhCCceE
Confidence 46789999999999999999999999999999999999999999999888842 566889999999999999999999
Q ss_pred EEEEcCCCCCHHHHHHHHHhhCCcEEeecccccCccceeccCCCCCccCCcccccccCceEEEeecCCCccccCCCCCCc
Q 010568 389 LILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRG 468 (507)
Q Consensus 389 ~i~~~G~~l~~~l~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~G 468 (507)
.+++||+|++++..+++.-.+.+++.++||.||+++..+...+.+... +.+|.|+|-++++++|++|++..+...-..|
T Consensus 406 ~~LsGGapLS~dtQrF~nic~C~Pv~qGYGLTEtca~~tv~e~~d~~~-g~vG~pl~c~eiKLvdw~EgGY~~~~~PPrG 484 (678)
T KOG1180|consen 406 YILSGGAPLSPDTQRFMNICFCCPVLQGYGLTETCAAATVLEPEDFST-GRVGAPLPCCEIKLVDWEEGGYFAKNKPPRG 484 (678)
T ss_pred EEEeCCCCCCHHHHHHHHHhccccccccccccchhcccEecChhhccc-ccccCCccceEEEEEEhhhcCccCCCCCCCc
Confidence 999999999999999999999999999999999999988888877766 8999999999999999999987766544689
Q ss_pred eEEEecCCccccccCChhhhhhhc-c-cC--ceeec-cEEEecC
Q 010568 469 EVCVKGSTVFSGYYKREDLTKEVM-V-DG--WFHTG-MGVWEQL 507 (507)
Q Consensus 469 el~v~g~~v~~gY~~~~~~~~~~~-~-dg--w~~TG-lg~~d~d 507 (507)
||+|+|+++..||++||+.|++.| . || ||+|| +|++.+|
T Consensus 485 EI~i~G~~vt~gY~kn~ekT~e~ft~~~G~~WF~TGDIGe~~pd 528 (678)
T KOG1180|consen 485 EILIGGPNVTMGYYKNEEKTKEDFTVEDGQRWFRTGDIGEFHPD 528 (678)
T ss_pred eEEecCCccChhhhCChhhhhhhceecCCcEEEeccccceecCC
Confidence 999999999999999999999999 4 89 99999 9999876
|
|
| >COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-62 Score=495.23 Aligned_cols=439 Identities=32% Similarity=0.591 Sum_probs=351.7
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHH
Q 010568 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120 (507)
Q Consensus 41 ~~~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~ 120 (507)
....++...+.++++.+|+..++... ..+.|+.+||+|+..++.++|++|+.+|+..||+|+|++.|+++|+++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~a~~~~-----~~~~~~~~ty~e~~~~v~~~a~gL~~lg~~~gdrvai~a~nr~eW~i~d 87 (613)
T COG1022 13 AEIHTLPKRLAERVKDRPDGVALMYK-----ELGGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIAD 87 (613)
T ss_pred hhcccHHHHHHHHhhcCCcceeEeee-----cCCcceEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHH
Confidence 44578999999999999998888765 3677899999999999999999999999977999999999999999999
Q ss_pred HHHHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHh--hcCce
Q 010568 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIE--KYGLA 198 (507)
Q Consensus 121 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--~~~~~ 198 (507)
+||+.+|++.||+.+..+++++.++++.+++++||++...............+.+.......+. ...... .....
T Consensus 88 ~a~~~~g~v~Vp~y~t~~~~~~~~iL~~se~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 164 (613)
T COG1022 88 LAILALGAVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVIIDL---VREAVEAKALVLE 164 (613)
T ss_pred HHHHHcCCeEEecCCCCCHHHHHHHHhcCCceEEEecchHHHHHHHhhhccccchhhhhhhhhh---hhhccchhhcccc
Confidence 9999999999999999999999999999999999999865544333222211211111111110 000000 00000
Q ss_pred EeeHHHHH---hccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEec
Q 010568 199 VYSWDEFL---QLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYL 275 (507)
Q Consensus 199 ~~~~~~l~---~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~ 275 (507)
........ ...........+..++|.|.|+|||||||.||||++||+|+++++..+...+. ..+++|++++++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~dDlatiiYTSGTTG~PKGVmLth~N~~~~v~~~~~~~~----~~~~~d~~LsfL 240 (613)
T COG1022 165 VFPDEGISLFLIDSAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLP----PIGPGDRVLSFL 240 (613)
T ss_pred ccccccchhhhhcccccccccCCCCccceEEEEEcCCCCCCCceEEEehHHHHHHHHHHHhhCC----CCCCCcEEEEeC
Confidence 00111111 11111111224568999999999999999999999999999999999766551 378999999999
Q ss_pred ChHHHHHHHHHHHHHHcCCEEEEecCCHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhHH
Q 010568 276 PLAHIFDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKF 355 (507)
Q Consensus 276 pl~h~~g~~~~~~~l~~G~~v~l~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (507)
|+.|++...+.......|+..++...++..+++.+++++||.++++|.+|+.+-+....+....+..++.+|.+++..+.
T Consensus 241 PlaHi~Er~~~~~~~~~~g~~~~~~~~~~~~~~dl~~~rPt~m~~VPRvwE~i~~~I~~kv~~~~~~~~~if~~a~~~~~ 320 (613)
T COG1022 241 PLAHIFERAFEGGLALYGGVTVLFKEDPRTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAY 320 (613)
T ss_pred cHHHHHHHHHHHHHHhhcceEEEecCCHHHHHHHHHHhCCeEEeechHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 99999999875444444444445555999999999999999999999999999999999999999888889999887653
Q ss_pred h----hhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhCCcEEeecccccCccceeccCC
Q 010568 356 H----NLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLP 431 (507)
Q Consensus 356 ~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~ 431 (507)
. .+..+. ........+++.++.+++.+|.++|++++||+++++++..+++.. |++++++||+||++++.+.+++
T Consensus 321 ~~~~~~~~~~~-~~~~~~~~d~LVf~Kir~~lGgri~~~~sGGa~l~~~~~~f~~~l-Gi~i~eGYGlTEts~~~~v~~~ 398 (613)
T COG1022 321 KKISRALLGGG-PLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFRSL-GIPILEGYGLTETSAVVSVNPP 398 (613)
T ss_pred HHHHhhhcccC-CcchhhhhhHHHHHHHHHHhCCcEEEEEecCCcCCHHHHHHHHHc-CCCeEEEecccccccceEEccc
Confidence 2 222111 111122378999999999999999999999999999999999985 8999999999999999999988
Q ss_pred CCCccCCcccccccCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhc-ccCceeec-cEEEecC
Q 010568 432 NEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTG-MGVWEQL 507 (507)
Q Consensus 432 ~~~~~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~-~dgw~~TG-lg~~d~d 507 (507)
+.... +++|+|+|++++||+| .|||+||||.||.|||+||+.|+++| .||||+|| +|.+|+|
T Consensus 399 ~~~~~-gtvG~p~p~~evKI~d-------------~GEilVRG~~Vm~GYyk~pe~Taeaf~~DGWf~TGDlg~~d~~ 462 (613)
T COG1022 399 DRFVL-GTVGKPLPGIEVKIAD-------------DGEILVRGPNVMKGYYKNPEATAEAFTEDGWFRTGDLGELDED 462 (613)
T ss_pred cCccc-CCcCCcCCCceEEEcc-------------CceEEEecchhcchhcCChHHHhhhccccCCcccCceeEEcCC
Confidence 87766 9999999999999998 59999999999999999999999999 69999999 9999985
|
|
| >PLN02387 long-chain-fatty-acid-CoA ligase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-60 Score=511.14 Aligned_cols=477 Identities=34% Similarity=0.591 Sum_probs=380.3
Q ss_pred ceeecCccCCCCCCCCCCCCCHHHHHHHHHHhCCCCCceeeEeec--------cC------cCCceEEEeHHHHHHHHHH
Q 010568 25 PVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIV--------DG------KAGKYVWKTYKEVYDLVIK 90 (507)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~tl~~~l~~~~~~~pd~~a~~~~~~~--------~~------~~~~~~~~Ty~el~~~~~~ 90 (507)
.+||+.....-.....+...|+.++|+++++++||++|+...... ++ ..+.|+.+||+||.+++++
T Consensus 39 ~~~r~~~~~~~~~~~~~~~~t~~~l~~~~~~~~pd~~al~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~v~~ 118 (696)
T PLN02387 39 YAIRNARFPELVETPWEGATTLAALFEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITYGQVFERVCN 118 (696)
T ss_pred CceecCccccccccCCCCCCCHHHHHHHHHHHCCCCceEEEecccccccccccCCcccccccCCCcEEEEHHHHHHHHHH
Confidence 359988755333334577899999999999999999999543100 11 1255778999999999999
Q ss_pred HHHHHHHCCCCCCCEEEEEeCCchhhHHHHHHHHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCC
Q 010568 91 VVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPK 170 (507)
Q Consensus 91 ~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~ 170 (507)
+|++|.++|+++||+|+|+++|+++|+++++||+++|++++|+++.++.+++.++++.++++++|++.+....+.+....
T Consensus 119 lA~~L~~lG~~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~li~~~~~~~~l~~~~~~ 198 (696)
T PLN02387 119 FASGLVALGHNKEERVAIFADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEVTTVICDSKQLKKLIDISSQ 198 (696)
T ss_pred HHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHccCCCEEEECHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999987766665554433
Q ss_pred CCCCccEEEEecCCChhhHHHH-hhcCceEeeHHHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHH
Q 010568 171 TTEHLKTIVSFSKVKPEQREEI-EKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVT 249 (507)
Q Consensus 171 ~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~ 249 (507)
. +.++.++.+++......... ...+....+|+++...+...........++++++|+|||||||.||||++||++++.
T Consensus 199 ~-~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~I~yTSGTTG~PKGV~lth~~l~~ 277 (696)
T PLN02387 199 L-ETVKRVIYMDDEGVDSDSSLSGSSNWTVSSFSEVEKLGKENPVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVA 277 (696)
T ss_pred c-CCceEEEEECCCCchhhhhhhccCCcEEEEHHHHHHhhccCCCCCCCCCccceEEEEecCCCCCCCCEEEEEcHHHHH
Confidence 3 66778888875432111100 122345678888876653333233344689999999999999999999999999998
Q ss_pred HHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHHcCCEEEEecC----C-----HHHHHHHhhhhCCeEEec
Q 010568 250 FIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRG----D-----VKLLLEDIGELKPTIFCA 320 (507)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~v~l~~~----~-----~~~~~~~i~~~~vt~l~~ 320 (507)
.+..+...+ ..+..+|++++++|++|++++...+.++..|+++.+... + +..++..+++++||++++
T Consensus 278 ~~~~~~~~~----~~~~~~d~~l~~lPl~Hi~~~~~~~~~~~~g~~i~~g~~~~l~~~~~~~~~~~~~~i~~~~pT~~~~ 353 (696)
T PLN02387 278 TVAGVMTVV----PKLGKNDVYLAYLPLAHILELAAESVMAAVGAAIGYGSPLTLTDTSNKIKKGTKGDASALKPTLMTA 353 (696)
T ss_pred HHHHHHhhc----CCCCCCCEEEEECcHHHHHHHHHHHHHHHhCCEEEECChhhhcccccccccCchhhHHHhCCcEEEe
Confidence 887643321 246788999999999999999887777888888766432 1 234566899999999999
Q ss_pred CcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhHHhhhhcCC--CCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCC
Q 010568 321 VPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGH--KHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLT 398 (507)
Q Consensus 321 ~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~ 398 (507)
+|.+++++.+.........+.+++.+|+++...++..+.... .....+..++.+.++.++..+|+++|.+++||++++
T Consensus 354 vP~~l~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~i~~GGapl~ 433 (696)
T PLN02387 354 VPAILDRVRDGVRKKVDAKGGLAKKLFDIAYKRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLGGRIRFMLSGGAPLS 433 (696)
T ss_pred hhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhccCCcccccccchhhHHHHHHHHHHHhCCcEEEEEEcCCCCC
Confidence 999999999887777777788889999999988777654210 012345678888999999999999999999999999
Q ss_pred HHHHHHHHHhhCCcEEeecccccCccceeccCCCCCccCCcccccccCceEEEeecCCCccccC-CCCCCceEEEecCCc
Q 010568 399 PHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDAL-SSTPRGEVCVKGSTV 477 (507)
Q Consensus 399 ~~l~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~s~G~p~pg~~i~ivd~~~~~~~~~-~~g~~Gel~v~g~~v 477 (507)
+++.+.++..+|+++++.||+||+++.++....... ..+++|+|+||++++|+|+++++.... ..++.|||+|+||++
T Consensus 434 ~~~~~~~~~~~g~~v~~~YG~TEt~~~~~~~~~~~~-~~gsvG~p~p~~evkivd~~~~~~~~~~~~~p~GEi~vrGp~v 512 (696)
T PLN02387 434 GDTQRFINICLGAPIGQGYGLTETCAGATFSEWDDT-SVGRVGPPLPCCYVKLVSWEEGGYLISDKPMPRGEIVIGGPSV 512 (696)
T ss_pred HHHHHHHHHHcCCCeeEeechhhcccceeecCcccC-CCCccCCCCCceEEEEeeccccCcccCCCCCCCceEEeccCcc
Confidence 999988888889999999999999877766555433 358999999999999999655543321 233579999999999
Q ss_pred cccccCChhhhhhhcc---cC--ceeec-cEEEecC
Q 010568 478 FSGYYKREDLTKEVMV---DG--WFHTG-MGVWEQL 507 (507)
Q Consensus 478 ~~gY~~~~~~~~~~~~---dg--w~~TG-lg~~d~d 507 (507)
+.|||++|+.|+++|. || ||+|| +|++|+|
T Consensus 513 ~~GY~~~pe~T~~~f~~d~~G~~W~~TGDig~~d~d 548 (696)
T PLN02387 513 TLGYFKNQEKTDEVYKVDERGMRWFYTGDIGQFHPD 548 (696)
T ss_pred cchhcCCHHHHhhhhccccCCCceeecCceEEECCC
Confidence 9999999999999982 35 99999 9999986
|
|
| >PTZ00216 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-60 Score=506.85 Aligned_cols=476 Identities=28% Similarity=0.506 Sum_probs=374.3
Q ss_pred CCCCCCceeecCccCC----CCCCCCCCCCCHHHHHHHHHHhCCCCCceeeEeec----------cCc--------CCce
Q 010568 19 GRPSIGPVYRSLFAKD----GFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIV----------DGK--------AGKY 76 (507)
Q Consensus 19 ~~~~~~~~~~~~~~~~----~~~~~~~~~~tl~~~l~~~~~~~pd~~a~~~~~~~----------~~~--------~~~~ 76 (507)
..+..+++||.....+ .+....+...|+.++|+++++++||++|+.+.... ++. .+.+
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~p~~~a~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (700)
T PTZ00216 40 ETENASAIYRIAGVTDEEHERLRNEWYYGPNFLQRLERICKERGDRRALAYRPVERVEKEVVKDADGKERTMEVTHFNET 119 (700)
T ss_pred CCCCCCCcccCcccccchhcccccccCCCCCHHHHHHHHHHhCCCCCeEEEeccccccccccccCCCccccccccccCCc
Confidence 3456788998764332 33333456789999999999999999999875100 111 0246
Q ss_pred EEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHHHHHHhcCCEEeeccCCCChHHHHHHHhhcCccEEEe
Q 010568 77 VWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFV 156 (507)
Q Consensus 77 ~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~ 156 (507)
+.+||+||.++++++|++|+++|+++||+|+|+++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|+
T Consensus 120 ~~lTy~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~lv~ 199 (700)
T PTZ00216 120 RYITYAELWERIVNFGRGLAELGLTKGSNVAIYEETRWEWLASIYGIWSQSMVAATVYANLGEDALAYALRETECKAIVC 199 (700)
T ss_pred eEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEeeCCCCCHHHHHhhhhccCccEEEE
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCceEeeHHHHHhcccc--CCC-CCCCCCCCCeEEEEeccCC
Q 010568 157 EEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGEN--KQF-DLPVKKKNDICTIMYTSGT 233 (507)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~-~~~~~~~~~~a~i~~TSGt 233 (507)
+.+....+.............++.++..... ....+....+|++++..+.. ... ...+..++++++++|||||
T Consensus 200 ~~~~~~~l~~~~~~~~~~~~~ii~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGT 275 (700)
T PTZ00216 200 NGKNVPNLLRLMKSGGMPNTTIIYLDSLPAS----VDTEGCRLVAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGT 275 (700)
T ss_pred CHHHHHHHHHhhhhccCCceEEEEECCCccc----cccCCceEEEHHHHHHhCCccccccccCCCCCcccEEEEEEeCCC
Confidence 8765554443332211112245555532211 11123456789888766521 111 1223467899999999999
Q ss_pred CCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHHcCCEEEEecCCHHHHHH-----
Q 010568 234 TGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKLLLE----- 308 (507)
Q Consensus 234 TG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~v~l~~~~~~~~~~----- 308 (507)
||.||||++||+++++.+..+...+......+..+|++++++|++|.+++.....++..|+.+++. ++..+.+
T Consensus 276 TG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~v~~~--~~~~l~~~~~~~ 353 (700)
T PTZ00216 276 TGDPKGVMHTHGSLTAGILALEDRLNDLIGPPEEDETYCSYLPLAHIMEFGVTNIFLARGALIGFG--SPRTLTDTFARP 353 (700)
T ss_pred CCcCcEEEEEhHHHHHHHHHHHhhcccccCCCCCCCEEEEEChHHHHHHHHHHHHHHHcCCEEEEC--CHHHhhhhhccc
Confidence 999999999999999887765432211111246789999999999999987766678888887663 4555554
Q ss_pred --HhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhHHhhhhcCCCCCCCchhhhHHhHHHHHHHcCCc
Q 010568 309 --DIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGR 386 (507)
Q Consensus 309 --~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (507)
.++++++|++.++|.+++.+.+.........+.+++++|.++...++..+..+. ..+.++.+.++.++...+++
T Consensus 354 ~~~l~~~~pT~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~v~~~~~~~~g~~ 429 (700)
T PTZ00216 354 HGDLTEFRPVFLIGVPRIFDTIKKAVEAKLPPVGSLKRRVFDHAYQSRLRALKEGK----DTPYWNEKVFSAPRAVLGGR 429 (700)
T ss_pred cchHHHcCCcEEEechHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHcCC----CCchHHHHHHHHHHHHhCCc
Confidence 688999999999999999999988887777888999999999998887776542 34567888889999888899
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhCCcEEeecccccCccceeccCCCCCccCCcccccccCceEEEeecCCCccccCCCCC
Q 010568 387 VRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTP 466 (507)
Q Consensus 387 lr~i~~~G~~l~~~l~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~ 466 (507)
+|.+++||+++++++.++++..++ ++++.||+||+++.++....... ..+++|+|+||++++|+| +++.......++
T Consensus 430 lr~i~~GGa~l~~~~~~~~~~~~~-~l~~~YG~TEt~~~~~~~~~~~~-~~~svG~p~~g~evkI~d-~~~~~~~~~~~~ 506 (700)
T PTZ00216 430 VRAMLSGGGPLSAATQEFVNVVFG-MVIQGWGLTETVCCGGIQRTGDL-EPNAVGQLLKGVEMKLLD-TEEYKHTDTPEP 506 (700)
T ss_pred EEEEEECCCCCCHHHHHHHHHHhh-hHhhccCcccccccccccCCCCC-CCCCcCCcCCCeEEEEee-chhhccCCCCCC
Confidence 999999999999999998888778 99999999999877665554433 358999999999999999 554333333456
Q ss_pred CceEEEecCCccccccCChhhhhhhc-ccCceeec-cEEEecC
Q 010568 467 RGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTG-MGVWEQL 507 (507)
Q Consensus 467 ~Gel~v~g~~v~~gY~~~~~~~~~~~-~dgw~~TG-lg~~d~d 507 (507)
.|||+|+||+++.|||++|+.|+++| .||||+|| +|++|+|
T Consensus 507 ~GEL~vrG~~v~~GY~~~pe~T~~~f~~dGw~~TGDig~~d~d 549 (700)
T PTZ00216 507 RGEILLRGPFLFKGYYKQEELTREVLDEDGWFHTGDVGSIAAN 549 (700)
T ss_pred CceEEEcCCcccchhcCChhHhhhhccccCCeeccceEEEcCC
Confidence 89999999999999999999999999 79999999 9999976
|
|
| >KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-57 Score=427.75 Aligned_cols=407 Identities=22% Similarity=0.334 Sum_probs=344.3
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeC
Q 010568 32 AKDGFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGV 111 (507)
Q Consensus 32 ~~~~~~~~~~~~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~ 111 (507)
..++-...+-...|+++.++-.+++-||+.|+++.+ .+ .++||+||...++.+|.+|..+|+++||||++..|
T Consensus 38 ~~~g~~~ipl~~~Tigq~l~~~t~~v~dkea~Vf~~--eg-----~R~Tf~~~~~ev~slAaGll~lGL~kGDrVgvwgp 110 (596)
T KOG1177|consen 38 YVHGCSQIPLDSETIGQLLETTTERVPDKEAAVFDH--EG-----IRLTFSEFVSEVESLAAGLLSLGLKKGDRVGVWGP 110 (596)
T ss_pred ccCCCCCCCcccccHHHHHHHHhhccCcceEEEEee--cc-----chhhHHHHHHHHHHHHhhHHhhcCCCCCEEEEecC
Confidence 445666677889999999999999999999999863 33 35999999999999999999999999999999999
Q ss_pred CchhhHHHHHHHHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCCh-----hHHhhcC------------CCCCCC
Q 010568 112 NCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKI-----PEMLKTF------------PKTTEH 174 (507)
Q Consensus 112 n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~------------~~~~~~ 174 (507)
|+.+|+.+++||+++|.+.+++||++..++++..|++.+++++|+...+. +.+++++ ++..+.
T Consensus 111 N~~~w~l~~lA~A~AG~v~v~~NP~Yq~~elr~~L~k~~~k~l~~p~~~k~~ny~~~l~~icPEv~~~~~G~lkS~~lp~ 190 (596)
T KOG1177|consen 111 NSYEWVLCQLACARAGLVLVNLNPAYQSEELRYVLKKVGCKALFAPPQFKTQNYYETLLEICPEVMRGDPGQLKSELLPE 190 (596)
T ss_pred ChHHHHHHHHHHHHhceEEeccCcccccHHHHHHHhhcCeEEEEccchhhhchHHHHHHHhhHHhhcCCCcccccccccc
Confidence 99999999999999999999999999999999999999999999987542 2233333 233467
Q ss_pred ccEEEEecCCChhhHHHHhhcCceEeeHHHHHhccccCCCC-----CCCCCCCCeEEEEeccCCCCCCceeeeccHHHHH
Q 010568 175 LKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFD-----LPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVT 249 (507)
Q Consensus 175 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~ 249 (507)
+..++..++..+ -.+...++|++......... .....+++++.|+|||||||.||++.+||.++++
T Consensus 191 lthvi~~~ed~~---------~~Ga~~~sev~~~~s~~~~a~l~~~~k~~~pdd~~niQFTSGTTG~PKgatLsH~~~~N 261 (596)
T KOG1177|consen 191 LTHVILADEDHP---------LPGAFLLSEVLKAASKEERAKLADMSKWLSPDDAVNIQFTSGTTGAPKGATLSHYNFLN 261 (596)
T ss_pred ceEEEecCCCCc---------CCCceehHHHHHhcchHHHHHHHhhhhhcCCCCceEEEeccCCCCCCcceeeehhhhhh
Confidence 777776662221 23567788888766442211 2234679999999999999999999999999999
Q ss_pred HHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHH-HHHHHHcCCEEEEecC--CHHHHHHHhhhhCCeEEecCcHHHH
Q 010568 250 FIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG--DVKLLLEDIGELKPTIFCAVPRVLD 326 (507)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~v~l~~~--~~~~~~~~i~~~~vt~l~~~P~~l~ 326 (507)
+......++ ++..++++++..|++|.+|... .+.++..|++++++.. ++...+++|.++|+|+++++|+|+.
T Consensus 262 na~~vg~r~-----g~~e~~~i~~~~Pl~H~~G~~~~~ma~l~~gat~Vfp~~~f~~k~alqai~~ekcT~l~gtPtM~~ 336 (596)
T KOG1177|consen 262 NARAVGARA-----GYNEKHRICIPNPLYHCFGCVLGVMAALMHGATIVFPAPSFDPKDALQAISNEKCTTLYGTPTMFV 336 (596)
T ss_pred hHHHHHHHh-----CcCcceEEEecCchHHHHHHHHHHHHHHHhCcEEEeeCCCCChHHHHHHHHhhceEEEecChHHHH
Confidence 999866665 7888999999999999999765 8899999999999765 9999999999999999999999999
Q ss_pred HHHHHHHHhhhccchhHHHHHHHHHHhHHhhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHH
Q 010568 327 RIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLR 406 (507)
Q Consensus 327 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~ 406 (507)
.+++.-.. ...+++ ++|.++.||+++++++++.+.
T Consensus 337 Dlln~~~~-------------------------------------~~~~~s--------~lr~~vigGa~~s~eLlk~iv 371 (596)
T KOG1177|consen 337 DLLNIPQK-------------------------------------QQVDLS--------SLRKGVIGGAPVSPELLKLIV 371 (596)
T ss_pred HHhcchhh-------------------------------------ccCchh--------hhhhheeCCCCCCHHHHHHHH
Confidence 98763222 222232 788999999999999999999
Q ss_pred HhhCC-cEEeecccccCccceeccCCCCC--ccCCcccccccCceEEEeecCCCccccCCCCCCceEEEecCCccccccC
Q 010568 407 VVACA-HVLQGYGLTETCAGTFVSLPNEM--SMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYK 483 (507)
Q Consensus 407 ~~~~~-~v~~~YG~tE~~~~~~~~~~~~~--~~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~ 483 (507)
+..+. .+...||+||++.+.+....++. +..-++|+.+++.+.+|+| .+|...+.+ ..|||++||++++.|||+
T Consensus 372 ~~~~m~~i~v~YG~TEts~v~~~~~~~D~~~~~~ksVG~~m~h~Ea~iv~-~~g~~v~~~--~~Gel~iRGY~tMl~Ywg 448 (596)
T KOG1177|consen 372 NQMNMKDIAVAYGLTETSPVLFMSLLGDPPEERIKSVGHLMDHYEAAIVD-KDGSEVPLG--TKGELLIRGYSTMLGYWG 448 (596)
T ss_pred HhhCceeeEEEeeccccCcceeeecCCCCHHHHHhhhhhccccccccccc-CCCCccccC--CCceEEEEechhheeecC
Confidence 87664 47778999999998888777664 3457999999999999999 888877776 679999999999999999
Q ss_pred Chhhhhhhc-ccCceeec-cEEEecC
Q 010568 484 REDLTKEVM-VDGWFHTG-MGVWEQL 507 (507)
Q Consensus 484 ~~~~~~~~~-~dgw~~TG-lg~~d~d 507 (507)
+++.|.++. .|.||+|| +|.+|+|
T Consensus 449 ~~~kT~eti~~drW~~TGDi~~m~en 474 (596)
T KOG1177|consen 449 EEEKTKETIGNDRWYDTGDIAVMDEN 474 (596)
T ss_pred CcccchhhcccccceecCceEEEcCC
Confidence 999999999 89999999 9999986
|
|
| >KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-57 Score=455.13 Aligned_cols=395 Identities=29% Similarity=0.389 Sum_probs=315.9
Q ss_pred HHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCC--CCCCCEEEEEeCCchhhHHHHHHH
Q 010568 46 CWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCG--VEERGKCGIYGVNCPEWIIGMEAC 123 (507)
Q Consensus 46 l~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g--v~~gd~V~i~~~n~~~~~~~~lA~ 123 (507)
+..+.+.......+.+.+++. +.. + +.+||.|+..++.++|..|.++| +++||+|++++||++++.++++||
T Consensus 19 ~~~l~~~~~~~~~~~~~~i~~---~~~-g--~~~T~~e~~~~~~r~A~~L~~~~~~i~~gDvV~i~~pNs~~~~~~~la~ 92 (537)
T KOG1176|consen 19 ITFLGRPAFVYLDRNTSLVYQ---DSD-G--RELTYSELHDRCRRLASALSELGLGIKKGDVVGILAPNTPEFVELALAV 92 (537)
T ss_pred cccccccccccccCcceEEEe---cCC-C--cEEcHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence 344444333333333777765 321 1 56999999999999999999875 899999999999999999999999
Q ss_pred HhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCceEee-H
Q 010568 124 NALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYS-W 202 (507)
Q Consensus 124 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~ 202 (507)
..+|+++.++||.+++.++...++.++++++|++.+....+.+...... ..++++......... ........ +
T Consensus 93 ~~~Ga~~~~~Np~~~~~ei~~~~~~s~~kiif~d~~~~~~i~~~~~~~~---~~i~~l~~~~~~~~~---~~~~~~~~~~ 166 (537)
T KOG1176|consen 93 PMAGAVLNPLNPRLTASEIAKQLKDSKPKLIFVDEDFYDKISEATSKLA---LKIIVLTGDEGVISI---SDLVEDLDAF 166 (537)
T ss_pred HHcCccccccCcccCHHHHHHHHHhcCCeEEEEcCchHHHHHHHHhhcC---CceEEEecccCcccc---ccccccccch
Confidence 9999999999999999999999999999999999999888766665432 344444432000000 00001112 4
Q ss_pred HHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHH
Q 010568 203 DEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282 (507)
Q Consensus 203 ~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g 282 (507)
.++........ .++...++++.++|||||||.||||++||++++.+...... ....+..|+.++.+|++|.+|
T Consensus 167 ~~~~~~~~~~~--~~~~~~dd~~~il~SSGTTg~PKgV~lsHr~~~~~~~~~~~-----~~~~~~~~v~l~~lPl~H~~G 239 (537)
T KOG1176|consen 167 EDLMPEGLPDG--IRPVSEDDTAAILYSSGTTGLPKGVVLSHRNLIANTLSIKI-----GWELTSDDVYLCTLPLFHIYG 239 (537)
T ss_pred hhccccCCCcc--cccCCCCCeEEEecCCCCCCCCceEEEecHHHHHHHHHhhh-----cccCCCCceEEEechHHHHhH
Confidence 44444442222 55667899999999999999999999999999998776332 336777999999999999999
Q ss_pred HHHHHHH-HHcCCEEEEecC-CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhHHhhhhc
Q 010568 283 RAIEEVF-ISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKK 360 (507)
Q Consensus 283 ~~~~~~~-l~~G~~v~l~~~-~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 360 (507)
+..++.+ +..|+++++.+. ++..+++.|++|++|+++++|.++..+++
T Consensus 240 l~~~~~~~~~~~~~ii~~~~f~~~~~~~~i~kykvt~~~~vP~~~~~l~~------------------------------ 289 (537)
T KOG1176|consen 240 LITLLLSLLAGGTTIICLRKFDAELFLDLIEKYKVTHLFLVPPVLNMLAK------------------------------ 289 (537)
T ss_pred HHHHHHHHHhCCceEEECCCCCHHHHHHHHHHhCEEEEEcChHHHHHHhc------------------------------
Confidence 9987764 666666666666 99999999999999999999999999876
Q ss_pred CCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhC-CcEEeecccccCccceeccCCCCCccCCc
Q 010568 361 GHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVAC-AHVLQGYGLTETCAGTFVSLPNEMSMIGT 439 (507)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~-~~v~~~YG~tE~~~~~~~~~~~~~~~~~s 439 (507)
++...+.++ ++++.+.+||+++++++.+++++.++ ..+.++|||||+++.++.+......++++
T Consensus 290 -------~p~~~~~~l--------~sl~~v~~gga~~~~~~~~~~~~~l~~~~v~q~YGmTE~~~~~~~~~~~~e~k~~s 354 (537)
T KOG1176|consen 290 -------SPIVKKYDL--------SSLRSVLSGGAPLSPATLEKVKERLPNVTVIQGYGMTEAGGLITSNDWGPERKPGS 354 (537)
T ss_pred -------CCccCcccC--------CccEEEEecCCCCCHHHHHHHHHhCCCceEEEeeccccccCceeecCCCccCcccc
Confidence 222333333 38999999999999999999999998 89999999999998777776655456799
Q ss_pred ccccccCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhcc-cCceeec-cEEEecC
Q 010568 440 VGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV-DGWFHTG-MGVWEQL 507 (507)
Q Consensus 440 ~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~-dgw~~TG-lg~~d~d 507 (507)
+|++++|++.+|.+ +.|...+. ++.||||+||+.++.||++||++|++.|. ||||+|| +|++|+|
T Consensus 355 vG~~~~g~~~~v~~-e~g~~l~~--~~~GEI~vrg~~imkGY~~NpeaT~~~~~~~GW~~TGDiGy~D~D 421 (537)
T KOG1176|consen 355 VGRLLPGVRVKVLD-ETGVSLGP--NQTGEICVRGPQVMKGYLKNPEATKEAFDDDGWFHTGDLGYFDED 421 (537)
T ss_pred cCccccceEEEeeC-CCCCCCCC--CCceEEEEECcccchhhcCChHHHHhhcccCCccccCceEEEcCC
Confidence 99999999999988 77776655 48999999999999999999999999995 4999999 9999997
|
|
| >COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-56 Score=465.20 Aligned_cols=396 Identities=26% Similarity=0.425 Sum_probs=323.4
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHH
Q 010568 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120 (507)
Q Consensus 41 ~~~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~ 120 (507)
....++.+++.+++..+|+++|+++. +... .+||+||.++++++|+.|++.|+++||+|+|+++|++++++++
T Consensus 8 ~~~~~~~~~l~~~a~~~~~~~a~~~~---~~~~----~~Ty~el~~~~~~~A~~L~~~~v~~gdrVail~~N~~e~~~~~ 80 (534)
T COG0318 8 TAELTLASLLERAARRNPDRPALIFL---GRGG----RLTYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAF 80 (534)
T ss_pred cccccHHHHHHHHHHhCCCceEEEEc---CCCc----eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHH
Confidence 55689999999999999999999986 4321 5999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCceE-
Q 010568 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAV- 199 (507)
Q Consensus 121 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~- 199 (507)
+||+++|++++|+||.+..+++.++++.++++.++++.+............ +....+........ ..
T Consensus 81 ~a~~~~Gav~vpln~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-----------~~~ 148 (534)
T COG0318 81 LAALRAGAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFAALLEAVAEAL-PVVLVVLLVGDADD-----------RLP 148 (534)
T ss_pred HHHHhcCEEEeecCcccCHHHHHHHHHhcCCeEEEEcccchhHHHHHhccC-CcceEEEecccccc-----------ccc
Confidence 999999999999999999999999999999999999988433333333222 22223332222111 00
Q ss_pred eeHHHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhcccc--CCCCcEEEEecCh
Q 010568 200 YSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEK--LTSEDVYVSYLPL 277 (507)
Q Consensus 200 ~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~--~~~~d~~l~~~pl 277 (507)
.+++++...............++++++++|||||||.||+|++||+++..+...+...+ . ++..|++++++|+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgv~~th~~~~~~~~~~~~~~-----~~~~~~~d~~l~~lPl 223 (534)
T COG0318 149 ITLEALAAEGPGPDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAAL-----GGGLTPDDVVLSWLPL 223 (534)
T ss_pred ccHHHHhhccCCcccccCCCCCCCEEEEEeCCCCCCCCCEeEEecHhHHHHHHHHHHHh-----cccCCCCceEEEecCh
Confidence 24555543332222222236789999999999999999999999999999988865544 5 7899999999999
Q ss_pred HHHHHHHHHH-HHHHcCCEEEEec---CCHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHh
Q 010568 278 AHIFDRAIEE-VFISNGAAIGFWR---GDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSY 353 (507)
Q Consensus 278 ~h~~g~~~~~-~~l~~G~~v~l~~---~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (507)
+|.+|+...+ ..++.|+++++.+ +++..++..+.++++|+++++|+++..++.+.....
T Consensus 224 ~H~~Gl~~~~~~~~~~G~~~v~~~~~~f~~~~~~~~i~~~~~t~~~~vPt~~~~ll~~~~~~~----------------- 286 (534)
T COG0318 224 FHIFGLIVGLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKDD----------------- 286 (534)
T ss_pred HHHHHHHHHHHHHHHcCCEEEeCCCCCcCHHHHHHHHHHhcceEEecchHHHHHHHhCCccCc-----------------
Confidence 9999999755 4599999999987 499999999999999999999999999876322111
Q ss_pred HHhhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhC-CcEEeecccccCccceeccCCC
Q 010568 354 KFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVAC-AHVLQGYGLTETCAGTFVSLPN 432 (507)
Q Consensus 354 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~-~~v~~~YG~tE~~~~~~~~~~~ 432 (507)
.+++ +++|.+++||+++++++.+++++.++ ..+++.||+||+++.++.+...
T Consensus 287 --------------------~~~~-------~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~ 339 (534)
T COG0318 287 --------------------DDLS-------SSLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTINPPD 339 (534)
T ss_pred --------------------cccc-------cceEEEEecCCcCCHHHHHHHHHHhCCCceEEeecccccCceeecCCCc
Confidence 0011 03999999999999999999999997 5799999999999888777776
Q ss_pred C-CccCCcccccccCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhccc-Cceeec-cEEEecC
Q 010568 433 E-MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVD-GWFHTG-MGVWEQL 507 (507)
Q Consensus 433 ~-~~~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~d-gw~~TG-lg~~d~d 507 (507)
. ....+++|+|+||++++|+| ++++ .+.+ |+.|||+|+||+++.|||++|+.|.+.|.+ |||+|| +|++|+|
T Consensus 340 ~~~~~~~~~G~~~pg~~v~Ivd-~~~~-~~~p-g~vGei~irgp~v~~GY~~~pe~t~~~f~~~gW~~TGDlg~~d~~ 414 (534)
T COG0318 340 DLLAKPGSVGRPLPGVEVRIVD-PDGG-EVLP-GEVGEIWVRGPNVMKGYWNRPEATAEAFDEDGWLRTGDLGYVDED 414 (534)
T ss_pred hhhhcCCcccccCCCcEEEEEe-CCCC-ccCC-CCceEEEEECchhhhhhcCChHHHHHhhccCCeeeecceEEEcCC
Confidence 6 23458889999999999999 7666 2222 689999999999999999999999998865 999999 9999986
|
|
| >COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-55 Score=435.77 Aligned_cols=385 Identities=22% Similarity=0.277 Sum_probs=312.1
Q ss_pred HHHHHHHHh-CCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHH-CCCCCCCEEEEEeCCchhhHHHHHHHHh
Q 010568 48 DVFRMAVER-NPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRT-CGVEERGKCGIYGVNCPEWIIGMEACNA 125 (507)
Q Consensus 48 ~~l~~~~~~-~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~-~gv~~gd~V~i~~~n~~~~~~~~lA~~~ 125 (507)
+.++++.+. .+|+.|+++. +..+.. +.+||+||.+.++++|+.|++ .|+ +||||+|+||+.++.++++|||++
T Consensus 13 n~~dr~~~~~~~~~~aii~~---~e~~~~-~~~Ty~~L~~~v~r~A~~L~~~~gv-kGDrV~iymp~~pe~~~a~LA~~r 87 (528)
T COG0365 13 NALDRHLEADRPDDTAIIFD---GEDGLF-RELTYGDLRREVARLANALKDLGGV-KGDRVAIYMPNSPEAVIALLATAR 87 (528)
T ss_pred hhhhhhhhccCCCceEEEEE---cCCCCc-eEEEHHHHHHHHHHHHHHHHHhCCC-CCCEEEEEcCCCHHHHHHHHHHHH
Confidence 357777664 4689999997 444334 899999999999999999997 678 999999999999999999999999
Q ss_pred cCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcC--CCCCCCccEEEEecCCChhhHHHHhhcCceEeeHH
Q 010568 126 LGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTF--PKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWD 203 (507)
Q Consensus 126 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (507)
+|++.+|+.+.++++++...+++++++++|+++.......... ......+..+++..... ..|+
T Consensus 88 iGAI~~~vf~~f~~~al~~Ri~d~~~k~vit~d~~~~~gk~~~~~~~~~~~~~~~iv~~r~~--------------~~~~ 153 (528)
T COG0365 88 IGAIPAVVSPGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADAVLSSVVVVPRLG--------------LWYD 153 (528)
T ss_pred cCCEEeecccCCCHHHHHHHHHccCCCEEEEecccccccccccchhHHHHhhcceEEecccc--------------ccHH
Confidence 9999999999999999999999999999999886544322111 00000111133333221 5677
Q ss_pred HHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHH
Q 010568 204 EFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDR 283 (507)
Q Consensus 204 ~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~ 283 (507)
++...... ..+....+.+|+++++|||||||+||+|+++|..++........ ..+.+.++|++++..++.|..|.
T Consensus 154 ~~~~~~~~-~~~~~~~~~~dpl~ilYTSGTTG~PKgv~H~~gg~l~~~~~~~~----~~~~~~~~Dv~w~~ad~GW~~g~ 228 (528)
T COG0365 154 EAVEKASE-KFEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAK----FHGDLLPGDRFWNSSDPGWIYGL 228 (528)
T ss_pred HHhhccCC-CCCccccCCCCeEEEEeCCCCCCCCceEEEeCchHHHHHHHHHH----HhhCCCCCCEEEeCCCchhhhCc
Confidence 77765532 33334478999999999999999999999999987766655332 22366799999999999999999
Q ss_pred HH-HHHHHHcCCEEEEecC----CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhHHhhh
Q 010568 284 AI-EEVFISNGAAIGFWRG----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNL 358 (507)
Q Consensus 284 ~~-~~~~l~~G~~v~l~~~----~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 358 (507)
+. ++.+|..|++++++++ ++..+++.|+++++|.+++.|+.++.|.+.-.
T Consensus 229 ~~~v~~pL~~Gat~~~~eg~p~~~~~~~~~~ie~~~vt~~~tsPT~~R~l~~~g~------------------------- 283 (528)
T COG0365 229 WYSVFSPLASGATTVLYDGRPFYSPERLWEALEKYKVTIFGTSPTFLRRLMKLGL------------------------- 283 (528)
T ss_pred hHHHHHHHhcCCeEEEeCCCCCCCHHHHHHHHHHhCCceEeeCHHHHHHHHhcCC-------------------------
Confidence 87 8899999999999875 38999999999999999999999999865211
Q ss_pred hcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhCCcEEeecccccCccceeccCCCCCccCC
Q 010568 359 KKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIG 438 (507)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~ 438 (507)
..+.++ ++||.+.++|||++++.++++.+.+|+++.+.||+||+|+++....+ ..+++
T Consensus 284 ------------~~~~dl--------ssLr~~~SaGEPLnpe~~~w~~~~~g~~i~d~~gqTEtg~~~~~~~~--~~~~g 341 (528)
T COG0365 284 ------------GEPYDL--------SSLRVLGSAGEPLNPEAFEWFYSALGVWILDIYGQTETGMGFIAGRP--PVKNG 341 (528)
T ss_pred ------------cccccc--------hhheeeeccCCCCCHHHHHHHHHHhCCCEeccccccccCccccCCCC--CcCCC
Confidence 222233 38999999999999999999999999999999999999966665555 33346
Q ss_pred cccccccCceEEEeecCCCccccCCCCCCceEEEecC--CccccccCChhhhhhhcccCceeec-cEEEecC
Q 010568 439 TVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGS--TVFSGYYKREDLTKEVMVDGWFHTG-MGVWEQL 507 (507)
Q Consensus 439 s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~--~v~~gY~~~~~~~~~~~~dgw~~TG-lg~~d~d 507 (507)
+.|+|+||+++.|+| ++|+.++.+ + |+|.++.| +++++||+||+.+.+++.++||.|| .+++|+|
T Consensus 342 ~~g~p~pG~~~~vvd-d~g~~~~~~--~-G~Lvi~~~~p~~~~~~w~d~er~~~~y~~~~y~tGD~~~~Ded 409 (528)
T COG0365 342 SSGLPLPGYAVRRVD-DEGNPVPPG--V-GELVVRLPWPGMALTYWNDPERYKEAYFGRWYRTGDWAERDED 409 (528)
T ss_pred CCCCCCCCceeEEEC-CCCCcCCCC--c-eEEEEeCCCchhhhhhhCCHHHHHHHHhhceeecCceeEEccC
Confidence 669999999999999 776655554 6 99999986 8999999999999999966699999 9999997
|
|
| >PTZ00237 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-53 Score=452.90 Aligned_cols=414 Identities=17% Similarity=0.211 Sum_probs=310.8
Q ss_pred CCCHHHHHHHHHHh--CCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHH
Q 010568 43 MESCWDVFRMAVER--NPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120 (507)
Q Consensus 43 ~~tl~~~l~~~~~~--~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~ 120 (507)
.++..++|+++++. +||++|+++. ....+..+++||+||.++++++|+.|+++|+++||+|+|+++|++++++++
T Consensus 58 ~n~~~~~l~~~~~~~~~~~~~A~~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GDrV~i~~~n~~e~~~~~ 134 (647)
T PTZ00237 58 LNTCYNVLDIHVKNPLKRDQDALIYE---CPYLKKTIKLTYYQLYEKVCEFSRVLLNLNISKNDNVLIYMANTLEPLIAM 134 (647)
T ss_pred eeHHHHHHHHhhcccCCCCceEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHH
Confidence 35678889888765 7999999875 333333478999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCC---------hhHHhhcCCCCCCCccEEEEecCCC---hhh
Q 010568 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKK---------IPEMLKTFPKTTEHLKTIVSFSKVK---PEQ 188 (507)
Q Consensus 121 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~~~~~~v~~~~~~~---~~~ 188 (507)
|||+++|++++|+++.++.+++.+++++++++++|+++.. ...+.............++++.... ...
T Consensus 135 lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~ 214 (647)
T PTZ00237 135 LSCARIGATHCVLFDGYSVKSLIDRIETITPKLIITTNYGILNDEIITFTPNLKEAIELSTFKPSNVITLFRNDITSESD 214 (647)
T ss_pred HHHHHhCcEEEeeCCCCCHHHHHHHHHhcCCCEEEEcccceeCCceechHHHHHHHHhcccCCCCEEEEEEcCCcccccc
Confidence 9999999999999999999999999999999999997531 1222222211101233455432110 000
Q ss_pred HHHH-h-hcCceEeeHHHHHhcccc----CCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHH-HHHHHhhhhhhhhhc
Q 010568 189 REEI-E-KYGLAVYSWDEFLQLGEN----KQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNEN-IVTFIAGVKCLLESV 261 (507)
Q Consensus 189 ~~~~-~-~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~-l~~~~~~~~~~~~~~ 261 (507)
.... . ........|++++..... .........++++++|+|||||||.||+|+++|.+ +.........
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~----- 289 (647)
T PTZ00237 215 LKKIETIPTIPNTLSWYDEIKKIKENNQSPFYEYVPVESSHPLYILYTSGTTGNSKAVVRSNGPHLVGLKYYWRS----- 289 (647)
T ss_pred cccccccCCCcccccHHHHHhhhccccCCCCCCceeeCCCCcEEEEEcCCCCCCCCeEEEcCcHHHHHHHHHHHH-----
Confidence 0000 0 000012457776653211 11122345789999999999999999999999998 4433222111
Q ss_pred cccCCCCcEEEEecChHHHHHHHHHHHHHHcCCEEEEecCC-------HHHHHHHhhhhCCeEEecCcHHHHHHHHHHHH
Q 010568 262 NEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGD-------VKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQ 334 (507)
Q Consensus 262 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~v~l~~~~-------~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~ 334 (507)
......++++++..|++|..+...++.+++.|+++++++++ +..+++.|+++++|+++++|++++.|++....
T Consensus 290 ~~~~~~~d~~~~~~~~~w~~~~~~~~~~l~~G~t~v~~~~~~~~p~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~ 369 (647)
T PTZ00237 290 IIEKDIPTVVFSHSSIGWVSFHGFLYGSLSLGNTFVMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTDPE 369 (647)
T ss_pred hcCCCCCcEEEEcCCCceEeeHHHHHHHHhCCcEEEEeCCCCCCCCCchHHHHHHHHHhCeEEEEeCHHHHHHHHhhCcc
Confidence 22566789999999999987666788899999999998642 67899999999999999999999998652100
Q ss_pred hhhccchhHHHHHHHHHHhHHhhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhCCcEE
Q 010568 335 KISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVL 414 (507)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~~~v~ 414 (507)
.. ......++ ++||.+++||+++++++.+++++.+|++++
T Consensus 370 ~~--------------------------------~~~~~~~l--------~~Lr~i~~~G~~l~~~~~~~~~~~~g~~i~ 409 (647)
T PTZ00237 370 AT--------------------------------IIRSKYDL--------SNLKEIWCGGEVIEESIPEYIENKLKIKSS 409 (647)
T ss_pred cc--------------------------------ccccccCc--------chheEEEecCccCCHHHHHHHHHhcCCCEE
Confidence 00 00001111 379999999999999999999998999999
Q ss_pred eecccccCccceeccCCCCCccCCcccccccCceEEEeecCCCccccCCCCCCceEEEecC---CccccccCChhhhhhh
Q 010568 415 QGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGS---TVFSGYYKREDLTKEV 491 (507)
Q Consensus 415 ~~YG~tE~~~~~~~~~~~~~~~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~---~v~~gY~~~~~~~~~~ 491 (507)
+.||+||+++.++..........+++|+|+||++++|+| ++|+.++ .|+.|||++++| +++.|||++++.+.+.
T Consensus 410 ~~yG~TE~~~~~~~~~~~~~~~~~s~G~p~~g~~~~i~d-~~g~~~~--~ge~GEl~v~~p~~p~~~~gy~~~~~~~~~~ 486 (647)
T PTZ00237 410 RGYGQTEIGITYLYCYGHINIPYNATGVPSIFIKPSILS-EDGKELN--VNEIGEVAFKLPMPPSFATTFYKNDEKFKQL 486 (647)
T ss_pred eeechHHhChhhhccCCCCCCCCCCCccCcCCceEEEEC-CCCCCCC--CCCceEEEEeccCCchhhCceeCCHHHHHHH
Confidence 999999998765543332223348999999999999999 7777665 458999999986 7899999999999988
Q ss_pred cc--cCceeec-cEEEecC
Q 010568 492 MV--DGWFHTG-MGVWEQL 507 (507)
Q Consensus 492 ~~--dgw~~TG-lg~~d~d 507 (507)
|. +|||+|| +|++|+|
T Consensus 487 f~~~~g~~~TGDlg~~d~d 505 (647)
T PTZ00237 487 FSKFPGYYNSGDLGFKDEN 505 (647)
T ss_pred HhCCCCEEECCcEEEECCC
Confidence 83 8999999 9999986
|
|
| >PRK12582 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-52 Score=443.10 Aligned_cols=418 Identities=20% Similarity=0.269 Sum_probs=315.7
Q ss_pred ccCCCCCCCCceeecCccC---CCCCCCCCCCCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHH
Q 010568 15 EASGGRPSIGPVYRSLFAK---DGFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKV 91 (507)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~ 91 (507)
++.+.+|+-...+|+.... ...-.+.....|+.++|+++++++||++|+++. +...+.++.+||+||.++++++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~pd~~a~~~~---~~~~~~~~~~Ty~el~~~v~~l 93 (624)
T PRK12582 17 RPLNWKPPDISVERRADGSIVIKSRHPLGPYPRSIPHLLAKWAAEAPDRPWLAQR---EPGHGQWRKVTYGEAKRAVDAL 93 (624)
T ss_pred CccccCCCceEEEEcCCceEEEecCCCCCCcccCHHHHHHHHHHHCCCchheecc---cCCCCceEEeEHHHHHHHHHHH
Confidence 4456667777777775211 111123356788999999999999999999875 4334556789999999999999
Q ss_pred HHHHHHCCCCCCCEEEEEeCCchhhHHHHHHHHhcCCEEeeccCCCCh-----HHHHHHHhhcCccEEEecCCC-hhHHh
Q 010568 92 VNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGA-----GAVEFIICHSGVSIAFVEEKK-IPEML 165 (507)
Q Consensus 92 a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~-----~~l~~~l~~~~~~~vi~~~~~-~~~~~ 165 (507)
|++|.+.|+++||+|+++++|++++++++|||+++|++++|++|.++. +++.++++.++++++|+++.. .....
T Consensus 94 A~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~p~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 173 (624)
T PRK12582 94 AQALLDLGLDPGRPVMILSGNSIEHALMTLAAMQAGVPAAPVSPAYSLMSHDHAKLKHLFDLVKPRVVFAQSGAPFARAL 173 (624)
T ss_pred HHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHcCCeEeeccCccccccCCHHHHHHHHHhcCCcEEEecCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999875 899999999999999998642 12222
Q ss_pred hcCCCCCCCccEEEEecCCChhhHHHHhhcCceEeeHHHHHhccccCC--CCCCCCCCCCeEEEEeccCCCCCCceeeec
Q 010568 166 KTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQ--FDLPVKKKNDICTIMYTSGTTGDPKGVMVS 243 (507)
Q Consensus 166 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~a~i~~TSGtTG~pK~v~~s 243 (507)
..... ... .++.++.... ......++++........ .......++++++|+|||||||.||+|.++
T Consensus 174 ~~~~~--~~~-~~i~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~t 241 (624)
T PRK12582 174 AALDL--LDV-TVVHVTGPGE---------GIASIAFADLAATPPTAAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINT 241 (624)
T ss_pred Hhhhh--cCc-eEEEEcCCCc---------ccccccHHHHhhcCCcchhhhhhccCCCCceEEEEEcCCCCCCCceEEee
Confidence 22211 112 2333332111 011234555554321111 111234578999999999999999999999
Q ss_pred cHHHHHHHhhhhhhhhhccccCC---CCcEEEEecChHHHHHHHH-HHHHHHcCCEEEEecC--C---HHHHHHHhhhhC
Q 010568 244 NENIVTFIAGVKCLLESVNEKLT---SEDVYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG--D---VKLLLEDIGELK 314 (507)
Q Consensus 244 h~~l~~~~~~~~~~~~~~~~~~~---~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~v~l~~~--~---~~~~~~~i~~~~ 314 (507)
|.++..++......+ ... ..+++++++|++|.+++.. ++.++..|+++++.+. + ...+++.+++++
T Consensus 242 h~~l~~~~~~~~~~~-----~~~~~~~~~~~l~~lPl~h~~g~~~~~~~~l~~G~tvvl~~~~~~~~~~~~~~~~i~~~~ 316 (624)
T PRK12582 242 QRMMCANIAMQEQLR-----PREPDPPPPVSLDWMPWNHTMGGNANFNGLLWGGGTLYIDDGKPLPGMFEETIRNLREIS 316 (624)
T ss_pred HHHHHHHHHHHHHhc-----cccCCCCCceEEEechHHHHHhHHHHHHHHHhCceEEEEcCCCcccchHHHHHHHHHhcC
Confidence 999988776643322 222 2579999999999999866 5677999999998753 2 345677889999
Q ss_pred CeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhHHhhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcC
Q 010568 315 PTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGA 394 (507)
Q Consensus 315 vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G 394 (507)
+|+++++|.+++.|++.+... +.....++ ++||.+++||
T Consensus 317 ~t~~~~vP~~~~~l~~~~~~~---------------------------------~~~~~~~~--------~slr~i~~gG 355 (624)
T PRK12582 317 PTVYGNVPAGYAMLAEAMEKD---------------------------------DALRRSFF--------KNLRLMAYGG 355 (624)
T ss_pred CeEEeccCHHHHHHHHHHhhC---------------------------------HHHHHHHh--------hheeEEEecC
Confidence 999999999999886643221 00111112 3899999999
Q ss_pred CCCCHHHHHHHHHhh------CCcEEeecccccCccceeccCCCCCccCCcccccccCceEEEeecCCCccccCCCCCCc
Q 010568 395 APLTPHVETFLRVVA------CAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRG 468 (507)
Q Consensus 395 ~~l~~~l~~~~~~~~------~~~v~~~YG~tE~~~~~~~~~~~~~~~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~G 468 (507)
+++++++.+.+++.+ ++++++.||+||++.++....... ...+++|+|+||++++|++ .|+.|
T Consensus 356 a~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~~~-~~~~svG~p~pg~~v~i~~----------~G~~G 424 (624)
T PRK12582 356 ATLSDDLYERMQALAVRTTGHRIPFYTGYGATETAPTTTGTHWDT-ERVGLIGLPLPGVELKLAP----------VGDKY 424 (624)
T ss_pred CCCCHHHHHHHHHHHHhhcCCCceEEeccccccccceeecccCCC-CCCCCCCcCCCCcEEEEcc----------CCCce
Confidence 999999999998853 368999999999987665333322 3458999999999999976 35789
Q ss_pred eEEEecCCccccccCChhhhhhhc-ccCceeec-cEEE
Q 010568 469 EVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTG-MGVW 504 (507)
Q Consensus 469 el~v~g~~v~~gY~~~~~~~~~~~-~dgw~~TG-lg~~ 504 (507)
||+|+|++++.|||++|+.+.+.| .||||+|| +|++
T Consensus 425 El~vrg~~v~~GY~~~p~~t~~~f~~dgw~~TGDlg~~ 462 (624)
T PRK12582 425 EVRVKGPNVTPGYHKDPELTAAAFDEEGFYRLGDAARF 462 (624)
T ss_pred EEEEECCcccccccCCccchhhhcCccCCccccceEEe
Confidence 999999999999999999999999 79999999 9998
|
|
| >PLN02860 o-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-53 Score=442.61 Aligned_cols=396 Identities=20% Similarity=0.208 Sum_probs=308.3
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHHHH
Q 010568 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (507)
Q Consensus 43 ~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (507)
.-++.++|++.++++||++|++.. + +.+||+||.++++++|++|.++|+++||+|+++++|+++++++++|
T Consensus 6 ~~~~~~~~~~~~~~~p~~~a~~~~---~------~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~v~~~n~~~~~~~~la 76 (563)
T PLN02860 6 QAHICQCLTRLATLRGNAVVTISG---N------RRRTGHEFVDGVLSLAAGLLRLGLRNGDVVAIAALNSDLYLEWLLA 76 (563)
T ss_pred hhHHHHHHHHHHHhcCCceEEecC---C------ceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 467999999999999999999743 2 4699999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCceEeeH
Q 010568 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSW 202 (507)
Q Consensus 123 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 202 (507)
|+++|++++|+++.++.+++.++++.++++++|++.+.............+.++.++.++......... -.....+
T Consensus 77 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~----~~~~~~~ 152 (563)
T PLN02860 77 VACAGGIVAPLNYRWSFEEAKSAMLLVRPVMLVTDETCSSWYEELQNDRLPSLMWQVFLESPSSSVFIF----LNSFLTT 152 (563)
T ss_pred HhhccEEEEeCCcccCHHHHHHHHHhcCceEEEEecccchHHHHHhhccCCceeEEEEecCcccccccc----hhhcccc
Confidence 999999999999999999999999999999999987643222222111123344444443221000000 0001112
Q ss_pred HHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHH
Q 010568 203 DEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282 (507)
Q Consensus 203 ~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g 282 (507)
+++...............++++++++|||||||.||+|.++|.++..+...... ..++..+|+++..+|++|.++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~-----~~~~~~~d~~l~~~pl~h~~g 227 (563)
T PLN02860 153 EMLKQRALGTTELDYAWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIA-----IVGYGEDDVYLHTAPLCHIGG 227 (563)
T ss_pred chhccCccccccccCCCCCCCeEEEEecCCCCCCCceEEeehHHHHHHHHHHHh-----hcCCCCCCEEEEecCchhhcc
Confidence 222211111111112335789999999999999999999999999877666332 336788999999999999999
Q ss_pred HHHHHHHHHcCCEEEEecC-CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhHHhhhhcC
Q 010568 283 RAIEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKG 361 (507)
Q Consensus 283 ~~~~~~~l~~G~~v~l~~~-~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 361 (507)
+...+.++..|+++++.+. ++..+++.++++++|+++++|.++..+++.......
T Consensus 228 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~------------------------ 283 (563)
T PLN02860 228 LSSALAMLMVGACHVLLPKFDAKAALQAIKQHNVTSMITVPAMMADLISLTRKSMT------------------------ 283 (563)
T ss_pred HHHHHHHHHcCceEEecCCCCHHHHHHHHHHhCCeeEEeChHHHHHHHHhhhhhhc------------------------
Confidence 9888889999999988775 999999999999999999999999998763211100
Q ss_pred CCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhh-CCcEEeecccccCccceeccCCCC-------
Q 010568 362 HKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVSLPNE------- 433 (507)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~------- 433 (507)
....+++|.+++||+++++++.+.+++.+ +.++++.||+||+++.++......
T Consensus 284 -------------------~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~ 344 (563)
T PLN02860 284 -------------------WKVFPSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTEACSSLTFMTLHDPTLESPK 344 (563)
T ss_pred -------------------cccccceeEEEeCCCcCCHHHHHHHHHhcCCCceecCCCccccCcccccccccccccccch
Confidence 00114899999999999999999999988 689999999999986554322111
Q ss_pred ---------------CccCCcccccccCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhc-ccCce
Q 010568 434 ---------------MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWF 497 (507)
Q Consensus 434 ---------------~~~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~-~dgw~ 497 (507)
.....++|+|+||++++|++ ++ .|+.|||+|+|+.++.|||++|+.+++.| .||||
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~~-~~-------~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~~g~~ 416 (563)
T PLN02860 345 QTLQTVNQTKSSSVHQPQGVCVGKPAPHVELKIGL-DE-------SSRVGRILTRGPHVMLGYWGQNSETASVLSNDGWL 416 (563)
T ss_pred hhhhhhcccccccccccCCcccCCccCCcEEEEec-CC-------CCceeEEEEecCcccccccCCccccchhccCCCeE
Confidence 11123789999999999998 54 35899999999999999999999999988 78999
Q ss_pred eec-cEEEecC
Q 010568 498 HTG-MGVWEQL 507 (507)
Q Consensus 498 ~TG-lg~~d~d 507 (507)
+|| +|++|+|
T Consensus 417 ~TGDl~~~d~d 427 (563)
T PLN02860 417 DTGDIGWIDKA 427 (563)
T ss_pred EccceEEEcCC
Confidence 999 9999875
|
|
| >PLN02654 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-52 Score=447.69 Aligned_cols=409 Identities=18% Similarity=0.230 Sum_probs=311.5
Q ss_pred CCHHHHHHHHHH-hCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHHHH
Q 010568 44 ESCWDVFRMAVE-RNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (507)
Q Consensus 44 ~tl~~~l~~~~~-~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (507)
+...++|+++++ .+||++|+++. ..+.+..+++||+||.++++++|++|+++|+++||+|+|+++|++++++++||
T Consensus 88 N~~~~~l~~~~~~~~~~~~Al~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~pn~~e~v~a~lA 164 (666)
T PLN02654 88 NICYNCLDRNVEAGNGDKIAIYWE---GNEPGFDASLTYSELLDRVCQLANYLKDVGVKKGDAVVIYLPMLMELPIAMLA 164 (666)
T ss_pred eHHHHHHHHhhccCCCCCEEEEEE---cCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 445788888876 48999999875 33344457899999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhH---------HhhcCCCC---CCCccEEEEecCCChhhHH
Q 010568 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPE---------MLKTFPKT---TEHLKTIVSFSKVKPEQRE 190 (507)
Q Consensus 123 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~---------~~~~~~~~---~~~~~~v~~~~~~~~~~~~ 190 (507)
|+++|++++|+++.++.+++..++++++++++|+++..... +....... ......++..+........
T Consensus 165 ~~~~Gav~vpv~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (666)
T PLN02654 165 CARIGAVHSVVFAGFSAESLAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVGICLTYENQLAMKRE 244 (666)
T ss_pred HHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHHHHhccccCCCccEEEEeccccccccc
Confidence 99999999999999999999999999999999998764211 11111000 0111222332221100000
Q ss_pred HHhhcCceEeeHHHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHH-hhhhhhhhhccccCCCCc
Q 010568 191 EIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFI-AGVKCLLESVNEKLTSED 269 (507)
Q Consensus 191 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~-~~~~~~~~~~~~~~~~~d 269 (507)
...........|+++.... ....+.....++++++|+|||||||.||||+++|.+++... ..+.. ..++.++|
T Consensus 245 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~~ilyTSGTTG~PKgVv~sh~~~~~~~~~~~~~-----~~~~~~~d 318 (666)
T PLN02654 245 DTKWQEGRDVWWQDVVPNY-PTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKY-----AFDYKPTD 318 (666)
T ss_pred ccccccCCcccHHHHhhcC-CCCCCceecCCCCceEEEecCCCCCCCceEEecccHHHHHHHHHHHH-----hcCCCCCc
Confidence 0000001123355655332 11122233577999999999999999999999999976443 33222 33788999
Q ss_pred EEEEecChHHHHHHHH-HHHHHHcCCEEEEecC-----CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhH
Q 010568 270 VYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG-----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLK 343 (507)
Q Consensus 270 ~~l~~~pl~h~~g~~~-~~~~l~~G~~v~l~~~-----~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~ 343 (507)
++++.+|++|..+... ++.+|+.|++++++++ ++..+++.|+++++|+++++|++++.|.+.....
T Consensus 319 ~~~~~~~~~~~~g~~~~~~~~L~~G~tvvl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~-------- 390 (666)
T PLN02654 319 VYWCTADCGWITGHSYVTYGPMLNGATVLVFEGAPNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDEY-------- 390 (666)
T ss_pred EEEEcCCchhhhhhHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhhCccc--------
Confidence 9999999999998765 6788999999999863 7899999999999999999999999986521100
Q ss_pred HHHHHHHHHhHHhhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhC---CcEEeecccc
Q 010568 344 KTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVAC---AHVLQGYGLT 420 (507)
Q Consensus 344 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~---~~v~~~YG~t 420 (507)
....++ ++||.++++|+++++++.+++.+.+| +++.+.||+|
T Consensus 391 ---------------------------~~~~~l--------~~Lr~i~~~Ge~l~~~~~~~~~~~~g~~~~~i~~~yg~T 435 (666)
T PLN02654 391 ---------------------------VTRHSR--------KSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQT 435 (666)
T ss_pred ---------------------------cccCCh--------hheeEEEEecCCCCHHHHHHHHHHhCCCCCceecccccc
Confidence 011112 37999999999999999999999887 6899999999
Q ss_pred cCccceeccCCCC-CccCCcccccccCceEEEeecCCCccccCCCCCCceEEEec--CCccccccCChhhhhhhc---cc
Q 010568 421 ETCAGTFVSLPNE-MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKG--STVFSGYYKREDLTKEVM---VD 494 (507)
Q Consensus 421 E~~~~~~~~~~~~-~~~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g--~~v~~gY~~~~~~~~~~~---~d 494 (507)
|+++..+...+.. ...++++|+|+||++++|+| ++|+.++ .++.|||+|++ |+++.|||+|++.+...+ .+
T Consensus 436 E~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d-~~g~~~~--~~~~Gel~v~~~~p~~~~gy~~~~~~~~~~~~~~~~ 512 (666)
T PLN02654 436 ETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGKEIE--GECSGYLCVKKSWPGAFRTLYGDHERYETTYFKPFA 512 (666)
T ss_pred ccCCeeeccCCCCCCCCCCccCCCCCCceEEEEC-CCCCCCC--CCCceEEEEcCCCchhhhhhcCChHHHHHhhhhcCC
Confidence 9987665544432 34568999999999999999 8877654 44789999999 789999999999888776 38
Q ss_pred Cceeec-cEEEecC
Q 010568 495 GWFHTG-MGVWEQL 507 (507)
Q Consensus 495 gw~~TG-lg~~d~d 507 (507)
|||+|| +|++|+|
T Consensus 513 g~~~TGD~~~~d~d 526 (666)
T PLN02654 513 GYYFSGDGCSRDKD 526 (666)
T ss_pred CEEEeCceEEECCC
Confidence 999999 9999986
|
|
| >PRK08180 feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-52 Score=441.48 Aligned_cols=391 Identities=21% Similarity=0.321 Sum_probs=304.6
Q ss_pred CCCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHHH
Q 010568 42 GMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGME 121 (507)
Q Consensus 42 ~~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~l 121 (507)
...|+.++|+++++++||++|+++. + ..+.++.+||+||.++++++|++|.+.|+++||+|+++++|++++++++|
T Consensus 37 ~~~~l~~~l~~~a~~~p~~~a~~~~---~-~~~~~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~Vai~~~n~~e~~~~~l 112 (614)
T PRK08180 37 YPRRLTDRLVHWAQEAPDRVFLAER---G-ADGGWRRLTYAEALERVRAIAQALLDRGLSAERPLMILSGNSIEHALLAL 112 (614)
T ss_pred cCccHHHHHHHHHHHCCCCceeeec---c-CCCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHH
Confidence 3578999999999999999999864 2 23346789999999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEeeccCCCC-----hHHHHHHHhhcCccEEEecCCC-hhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhc
Q 010568 122 ACNALGLHCVPLYDTLG-----AGAVEFIICHSGVSIAFVEEKK-IPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKY 195 (507)
Q Consensus 122 A~~~~G~~~v~l~~~~~-----~~~l~~~l~~~~~~~vi~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 195 (507)
||+++|++++|++|.++ .+++.++++.++++++|++... .......... ... .++..+....
T Consensus 113 A~~~~Gav~vpl~~~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~--~~~-~~i~~~~~~~--------- 180 (614)
T PRK08180 113 AAMYAGVPYAPVSPAYSLVSQDFGKLRHVLELLTPGLVFADDGAAFARALAAVVP--ADV-EVVAVRGAVP--------- 180 (614)
T ss_pred HHHHcCCeEeeeccccccccCCHHHHHHHHhcCCCcEEEEcCHHHHHHHHhhhcc--CCc-eEEEecCCCC---------
Confidence 99999999999999988 7899999999999999997642 1111111111 112 2333322110
Q ss_pred CceEeeHHHHHhccccCC--CCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCC--CCcEE
Q 010568 196 GLAVYSWDEFLQLGENKQ--FDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLT--SEDVY 271 (507)
Q Consensus 196 ~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~--~~d~~ 271 (507)
......|+++........ .......++++++|+|||||||.||+|.+||.++..++......+ ... ..+++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~~~~~~ 255 (614)
T PRK08180 181 GRAATPFAALLATPPTAAVDAAHAAVGPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTF-----PFLAEEPPVL 255 (614)
T ss_pred CcccccHHHHhccccccchhhhccCCCcCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHhhc-----cccCCCCcEE
Confidence 001245666654321111 111234578999999999999999999999999998877644333 332 56899
Q ss_pred EEecChHHHHHHHH-HHHHHHcCCEEEEecC--C---HHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHH
Q 010568 272 VSYLPLAHIFDRAI-EEVFISNGAAIGFWRG--D---VKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKT 345 (507)
Q Consensus 272 l~~~pl~h~~g~~~-~~~~l~~G~~v~l~~~--~---~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~ 345 (507)
++++|++|.+++.. ++.+++.|+++++.+. + ...+++.++++++|+++++|.+++.|++.+.....
T Consensus 256 l~~lPl~h~~g~~~~~~~~l~~G~~v~~~~~~~~~~~~~~~l~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~-------- 327 (614)
T PRK08180 256 VDWLPWNHTFGGNHNLGIVLYNGGTLYIDDGKPTPGGFDETLRNLREISPTVYFNVPKGWEMLVPALERDAA-------- 327 (614)
T ss_pred EEecchHHHhhHHHHHHHHHhcCCEEEEeCCCccchhHHHHHHHHHHhCCcEEechHHHHHHHHHHHHhchh--------
Confidence 99999999999865 6678999999998752 3 35778899999999999999999998765432110
Q ss_pred HHHHHHHhHHhhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHh----hC--CcEEeeccc
Q 010568 346 LFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVV----AC--AHVLQGYGL 419 (507)
Q Consensus 346 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~----~~--~~v~~~YG~ 419 (507)
.. ...++++|.+++||+++++++.+.+++. ++ +++++.||+
T Consensus 328 -------------------------~~--------~~~~~~lr~v~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~ 374 (614)
T PRK08180 328 -------------------------LR--------RRFFSRLKLLFYAGAALSQDVWDRLDRVAEATCGERIRMMTGLGM 374 (614)
T ss_pred -------------------------hh--------hhhccceeEEEEccCCCCHHHHHHHHHHHHhhcCCCceeeeeecc
Confidence 00 0112489999999999999999998874 33 689999999
Q ss_pred ccCccceeccCCCCCccCCcccccccCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhc-ccCcee
Q 010568 420 TETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFH 498 (507)
Q Consensus 420 tE~~~~~~~~~~~~~~~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~-~dgw~~ 498 (507)
||++++++...... ..++++|+|+||++++|+| + +..|||+|+|++++.|||++|+.+.+.| .||||+
T Consensus 375 TE~~~~~~~~~~~~-~~~~svG~p~pg~~v~i~d-~---------~~~GEi~vrg~~v~~GY~~~p~~t~~~~~~dgw~~ 443 (614)
T PRK08180 375 TETAPSATFTTGPL-SRAGNIGLPAPGCEVKLVP-V---------GGKLEVRVKGPNVTPGYWRAPELTAEAFDEEGYYR 443 (614)
T ss_pred cccCCceEeccccc-CCCCcccCccCCcEEEEec-C---------CCCcEEEEecCccchhhcCChhHhHhhcccCCcee
Confidence 99987766554433 3458999999999999998 3 2469999999999999999999999999 699999
Q ss_pred ec-cEEEe
Q 010568 499 TG-MGVWE 505 (507)
Q Consensus 499 TG-lg~~d 505 (507)
|| +|+++
T Consensus 444 TGDlg~~~ 451 (614)
T PRK08180 444 SGDAVRFV 451 (614)
T ss_pred ccceEEec
Confidence 99 99993
|
|
| >PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-52 Score=437.82 Aligned_cols=391 Identities=21% Similarity=0.240 Sum_probs=304.6
Q ss_pred CCCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHHH
Q 010568 42 GMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGME 121 (507)
Q Consensus 42 ~~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~l 121 (507)
...++.+.|.+.++++|+++|+.+. +. .++||+||.++++++|+.|.+ .+||+|+|+++|++++++++|
T Consensus 17 ~~~~~~~~~~~~~~~~p~~~a~~~~---~~-----~~~Ty~el~~~~~~lA~~L~~---~~gd~Val~~~n~~e~~~~~l 85 (539)
T PRK06334 17 SGKTVLESFLKLCSEMTTATVCWDE---QL-----GKLSYNQVRKAVIALATKVSK---YPDQHIGIMMPASAGAYIAYF 85 (539)
T ss_pred cCCcHHHHHHHHHHhCCCceEEEeC---CC-----CcccHHHHHHHHHHHHHHHhh---ccCCeEEEEcCCchHHHHHHH
Confidence 3478999999999999999998754 22 359999999999999999987 389999999999999999999
Q ss_pred HHHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCceEee
Q 010568 122 ACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYS 201 (507)
Q Consensus 122 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 201 (507)
||+++|++++|+++.++.+++.++++.++++++|++.+....+.............++.+++.... ..
T Consensus 86 A~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------------~~ 153 (539)
T PRK06334 86 ATLLSGKIPVMINWSQGLREVTACANLVGVTHVLTSKQLMQHLAQTHGEDAEYPFSLIYMEEVRKE------------LS 153 (539)
T ss_pred HHHhcCCeeEecCcccchHHHHHHHHHcCCCEEEehHHHHHHHhhhhhccccccccEEEEehhhhh------------cc
Confidence 999999999999999999999999999999999998765544333221100011123333321100 01
Q ss_pred HHHHHhcc-----ccC----CCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEE
Q 010568 202 WDEFLQLG-----ENK----QFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYV 272 (507)
Q Consensus 202 ~~~l~~~~-----~~~----~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l 272 (507)
+.+..... ... ........++++++++|||||||.||+|.++|.++..+....... ..+..+|+++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~-----~~~~~~d~~l 228 (539)
T PRK06334 154 FWEKCRIGIYMSIPFEWLMRWFGVSDKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKF-----FSPKEDDVMM 228 (539)
T ss_pred HHHhhhhhhhhcCCchhhhhcccCCCCCcCCEEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHh-----cCCCCCceEE
Confidence 11110000 000 001223467899999999999999999999999999887764433 3678899999
Q ss_pred EecChHHHHHHHH-HHHHHHcCCEEEEecC--CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHH
Q 010568 273 SYLPLAHIFDRAI-EEVFISNGAAIGFWRG--DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNI 349 (507)
Q Consensus 273 ~~~pl~h~~g~~~-~~~~l~~G~~v~l~~~--~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~ 349 (507)
+.+|++|.+++.. ++.++..|+++++... ++..+++.|+++++|+++++|++++.+++.......
T Consensus 229 ~~~p~~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~------------ 296 (539)
T PRK06334 229 SFLPPFHAYGFNSCTLFPLLSGVPVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKKQES------------ 296 (539)
T ss_pred EecchHhhhhhHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHHhhhhccc------------
Confidence 9999999999865 6788999999988753 899999999999999999999999998763221100
Q ss_pred HHHhHHhhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhh-CCcEEeecccccCccceec
Q 010568 350 AYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFV 428 (507)
Q Consensus 350 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~-~~~v~~~YG~tE~~~~~~~ 428 (507)
..++||.+++||+++++++.+++++.+ ++.+++.||+||++.+++.
T Consensus 297 ---------------------------------~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~ 343 (539)
T PRK06334 297 ---------------------------------CLPSLRFVVIGGDAFKDSLYQEALKTFPHIQLRQGYGTTECSPVITI 343 (539)
T ss_pred ---------------------------------ccccccEEEECCccCCHHHHHHHHHHCCCCeEEecccccccCceEEe
Confidence 013799999999999999999999988 6899999999999887766
Q ss_pred cCCCCCccCCcccccccCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhc--ccCceeec-cEEEe
Q 010568 429 SLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM--VDGWFHTG-MGVWE 505 (507)
Q Consensus 429 ~~~~~~~~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~--~dgw~~TG-lg~~d 505 (507)
.........+++|+|++|++++|+| ++++ .+++.|+.|||+|+|++++.|||++++.+.... .+|||+|| +|++|
T Consensus 344 ~~~~~~~~~~~vG~p~~g~~v~i~d-~~~~-~~~~~g~~Gel~v~g~~~~~GY~~~~~~~~~~~~~~~~w~~TGD~g~~d 421 (539)
T PRK06334 344 NTVNSPKHESCVGMPIRGMDVLIVS-EETK-VPVSSGETGLVLTRGTSLFSGYLGEDFGQGFVELGGETWYVTGDLGYVD 421 (539)
T ss_pred ccCCCCCCCCcCceecCCCEEEEEc-CCCC-ccCCCCceEEEEEecCcccccccCCcccccceeeCCceeEECCCEEEEC
Confidence 5544433447899999999999998 5432 344567999999999999999999998654322 36799999 99999
Q ss_pred cC
Q 010568 506 QL 507 (507)
Q Consensus 506 ~d 507 (507)
+|
T Consensus 422 ~~ 423 (539)
T PRK06334 422 RH 423 (539)
T ss_pred CC
Confidence 75
|
|
| >PRK07788 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-52 Score=438.01 Aligned_cols=390 Identities=19% Similarity=0.229 Sum_probs=315.4
Q ss_pred CCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHHHHH
Q 010568 44 ESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEAC 123 (507)
Q Consensus 44 ~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~ 123 (507)
.++.++|++.++++||++|+++. + +++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||
T Consensus 49 ~~~~~~~~~~a~~~pd~~Al~~~---~------~~~Ty~el~~~~~~la~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~ 119 (549)
T PRK07788 49 GPFAGLVAHAARRAPDRAALIDE---R------GTLTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAA 119 (549)
T ss_pred chHHHHHHHHHHHCCCceEEEEC---C------CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence 48999999999999999999864 3 46999999999999999999999999999999999999999999999
Q ss_pred HhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCceEeeHH
Q 010568 124 NALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWD 203 (507)
Q Consensus 124 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (507)
+++|++++|+++.++.+++.++++.++++++|++.+....+..... ....+..++....... ........++
T Consensus 120 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-------~~~~~~~~~~ 191 (549)
T PRK07788 120 GKVGARIILLNTGFSGPQLAEVAAREGVKALVYDDEFTDLLSALPP-DLGRLRAWGGNPDDDE-------PSGSTDETLD 191 (549)
T ss_pred HhcCCEEEEeCCCCCHHHHHHHHHhcCCcEEEECchhHHHHHhhcc-ccccceEEEEecCccc-------cCCcCcccHH
Confidence 9999999999999999999999999999999999876655443321 1123333322221100 0012345677
Q ss_pred HHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHH
Q 010568 204 EFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDR 283 (507)
Q Consensus 204 ~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~ 283 (507)
++....... ..+...++.++++|||||||.||+|.++|.++...+..+... ..+..+++++...|++|.+++
T Consensus 192 ~~~~~~~~~---~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~-----~~~~~~d~~~~~~p~~~~~g~ 263 (549)
T PRK07788 192 DLIAGSSTA---PLPKPPKPGGIVILTSGTTGTPKGAPRPEPSPLAPLAGLLSR-----VPFRAGETTLLPAPMFHATGW 263 (549)
T ss_pred HHhcCCCCC---CCCCCCCCCcEEEECCCCCCCCCEEeccCccHHHHHHHHHhh-----CCCCcCCeEEEccchHHHHHH
Confidence 776543221 122345678999999999999999999999999887774433 367888999999999999999
Q ss_pred HHHHHHHHcCCEEEEecC-CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhHHhhhhcCC
Q 010568 284 AIEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGH 362 (507)
Q Consensus 284 ~~~~~~l~~G~~v~l~~~-~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 362 (507)
..++.++..|+++++.+. ++..+++.++++++|+++++|++++.+++.......
T Consensus 264 ~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~------------------------- 318 (549)
T PRK07788 264 AHLTLAMALGSTVVLRRRFDPEATLEDIAKHKATALVVVPVMLSRILDLGPEVLA------------------------- 318 (549)
T ss_pred HHHHHHHHhCCEEEECCCCCHHHHHHHHHHhCCcEEEEHHHHHHHHHhCcccccC-------------------------
Confidence 888888999999998765 999999999999999999999999998653211000
Q ss_pred CCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhCCcEEeecccccCccceeccCCCCCccCCcccc
Q 010568 363 KHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGP 442 (507)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~s~G~ 442 (507)
.. ..+++|.+++||+++++++.+.+++.++.++++.||+||++..+.....+....++++|+
T Consensus 319 ----------~~--------~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~vG~ 380 (549)
T PRK07788 319 ----------KY--------DTSSLKIIFVSGSALSPELATRALEAFGPVLYNLYGSTEVAFATIATPEDLAEAPGTVGR 380 (549)
T ss_pred ----------CC--------CCCceeEEEEeCCCCCHHHHHHHHHHhCccceeccCcchhchhhccChhhhhhcCCCccc
Confidence 00 013799999999999999999999989999999999999987655444333334579999
Q ss_pred cccCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhcccCceeec-cEEEecC
Q 010568 443 PVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG-MGVWEQL 507 (507)
Q Consensus 443 p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~dgw~~TG-lg~~d~d 507 (507)
|++|++++|+| +++..++. |+.|||+|+|+.++.||+++++. ...+|||+|| +|++|+|
T Consensus 381 ~~~~~~~~i~d-~~~~~~~~--g~~Gel~v~g~~~~~gY~~~~~~---~~~~g~~~TGDl~~~~~~ 440 (549)
T PRK07788 381 PPKGVTVKILD-ENGNEVPR--GVVGRIFVGNGFPFEGYTDGRDK---QIIDGLLSSGDVGYFDED 440 (549)
T ss_pred CCCCcEEEEEC-CCcCCCCC--CCeEEEEEeCCCccccccCCCcc---cccCCceecCceEEEcCC
Confidence 99999999999 77776555 69999999999999999998765 3468999999 9999875
|
|
| >PRK07529 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-52 Score=439.47 Aligned_cols=412 Identities=21% Similarity=0.260 Sum_probs=318.1
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHH
Q 010568 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120 (507)
Q Consensus 41 ~~~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~ 120 (507)
....|+.++|++.++++||++|+++... .+.....+++||+||.+++.++|+.|+++|+++||+|+++++|++++++++
T Consensus 22 ~~~~t~~~~l~~~a~~~p~~~Al~~~~~-~~~~~~~~~~Ty~eL~~~v~~~A~~L~~~Gi~~gd~V~i~~~n~~e~~~~~ 100 (632)
T PRK07529 22 DLPASTYELLSRAAARHPDAPALSFLLD-ADPLDRPETWTYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFAL 100 (632)
T ss_pred cCCCCHHHHHHHHHHHCCCCceEEeecc-cCCCCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHH
Confidence 3446899999999999999999987410 111123468999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCCh-----hHHhhcCCCCCCCccEEEEecCCChh--hHHHH-
Q 010568 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKI-----PEMLKTFPKTTEHLKTIVSFSKVKPE--QREEI- 192 (507)
Q Consensus 121 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~- 192 (507)
|||+++| +++|+++.++.+++.++++.++++++|++.... ..+....... +.++.++.++..... .....
T Consensus 101 lA~~~~G-i~~pi~~~~~~~~i~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~ 178 (632)
T PRK07529 101 WGGEAAG-IANPINPLLEPEQIAELLRAAGAKVLVTLGPFPGTDIWQKVAEVLAAL-PELRTVVEVDLARYLPGPKRLAV 178 (632)
T ss_pred HHHHHhC-EEEeCCCcCCHHHHHHHHHhcCCcEEEEeCCCCCchHHHHHHHHHhcC-CcceeEEEecCcccccccccccc
Confidence 9999999 568999999999999999999999999986532 2222222222 455666665532100 00000
Q ss_pred ----hhcCceEeeHHHHHhccccCC-CCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCC
Q 010568 193 ----EKYGLAVYSWDEFLQLGENKQ-FDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTS 267 (507)
Q Consensus 193 ----~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~ 267 (507)
...+.....|++.+....... .......++++++++|||||||.||+|.++|.+++.+.......+ .+..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~-----~~~~ 253 (632)
T PRK07529 179 PLIRRKAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLL-----GLGP 253 (632)
T ss_pred cccccccccccCCHHHHHhcCCCccccccCCCCcCceEEEEECCCccCcCCEEEEcHHHHHHHHHHHHHhc-----CCCC
Confidence 001123445666555432221 112234678999999999999999999999999998877644333 6788
Q ss_pred CcEEEEecChHHHHHHHH-HHHHHHcCCEEEEecC----C---HHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhcc
Q 010568 268 EDVYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG----D---VKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSG 339 (507)
Q Consensus 268 ~d~~l~~~pl~h~~g~~~-~~~~l~~G~~v~l~~~----~---~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~ 339 (507)
+|++++.+|++|.++... ++.++..|+++++.+. + ...+++.++++++|++.++|++++.+++....
T Consensus 254 ~d~~l~~~pl~h~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~----- 328 (632)
T PRK07529 254 GDTVFCGLPLFHVNALLVTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQVPVD----- 328 (632)
T ss_pred CCEEEEecCchhhhHHHHHHHHHHHCCCEEEecCccccCcchHHHHHHHHHHHhCCeEEEeHHHHHHHHHhCccc-----
Confidence 999999999999999875 7788999999998753 2 36888999999999999999999988642100
Q ss_pred chhHHHHHHHHHHhHHhhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhCCcEEeeccc
Q 010568 340 GLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGL 419 (507)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~~~v~~~YG~ 419 (507)
..++ +++|.+++||+++++++.+.+++.+++++++.||+
T Consensus 329 ---------------------------------~~~~--------~slr~v~~gg~~l~~~l~~~~~~~~g~~l~~~YG~ 367 (632)
T PRK07529 329 ---------------------------------GHDI--------SSLRYALCGAAPLPVEVFRRFEAATGVRIVEGYGL 367 (632)
T ss_pred ---------------------------------CCCc--------cceEEEEEcCCCCCHHHHHHHHHHhCCcEeeeecc
Confidence 0001 38999999999999999999999999999999999
Q ss_pred ccCccceeccCCCCCccCCcccccccCceEEEeecCCCc--cccCCCCCCceEEEecCCccccccCChhhhhhhc-ccCc
Q 010568 420 TETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEME--YDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGW 496 (507)
Q Consensus 420 tE~~~~~~~~~~~~~~~~~s~G~p~pg~~i~ivd~~~~~--~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~-~dgw 496 (507)
||++.++..+........+++|+|+|+++++|+..++++ ..+++.|+.|||+|+||+++.||++++. +...| .+||
T Consensus 368 TE~~~~~~~~~~~~~~~~~svG~~~p~~~v~i~~~d~~g~~~~~~~~g~~Gel~v~gp~v~~GY~~~~~-~~~~~~~~gw 446 (632)
T PRK07529 368 TEATCVSSVNPPDGERRIGSVGLRLPYQRVRVVILDDAGRYLRDCAVDEVGVLCIAGPNVFSGYLEAAH-NKGLWLEDGW 446 (632)
T ss_pred cccCcccccCCccccccCCCcccccCCceEEEEEcCCCCcccccCCCCCceEEEEECCCccccccCCcc-ccccccCCCc
Confidence 999887766655544456899999999999996533322 1455667999999999999999998754 55555 7899
Q ss_pred eeec-cEEEecC
Q 010568 497 FHTG-MGVWEQL 507 (507)
Q Consensus 497 ~~TG-lg~~d~d 507 (507)
|+|| +|++|+|
T Consensus 447 ~~TGDlg~~d~d 458 (632)
T PRK07529 447 LNTGDLGRIDAD 458 (632)
T ss_pred eEcCcEEEEcCC
Confidence 9999 9999976
|
|
| >TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-52 Score=442.46 Aligned_cols=406 Identities=18% Similarity=0.247 Sum_probs=318.7
Q ss_pred CCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHHHHH
Q 010568 44 ESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEAC 123 (507)
Q Consensus 44 ~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~ 123 (507)
+...++|+++++.+||++|+++. +.+.+..+.+||+||.+++.++|+.|+++|+++||+|+++++|++++++++|||
T Consensus 57 n~~~~~l~~~~~~~p~~~Al~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~ 133 (625)
T TIGR02188 57 NVSYNCVDRHLEARPDKVAIIWE---GDEPGEVRKITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAMLAC 133 (625)
T ss_pred EHHHHHHHHhhccCCCCeEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHH
Confidence 46778898888899999999976 433455678999999999999999999999999999999999999999999999
Q ss_pred HhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCCh---------hHHhhcCCCCCC-CccEEEEecCCChhhHHHHh
Q 010568 124 NALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKI---------PEMLKTFPKTTE-HLKTIVSFSKVKPEQREEIE 193 (507)
Q Consensus 124 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~ 193 (507)
+++|++++|+++.++.+++.++++.++++++|+++... ..+.+..... + .++.+++++...... ..
T Consensus 134 ~~~Gav~v~i~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~-- 209 (625)
T TIGR02188 134 ARIGAIHSVVFGGFSAEALADRINDAGAKLVITADEGLRGGKVIPLKAIVDEALEKC-PVSVEHVLVVRRTGNPV-PW-- 209 (625)
T ss_pred HHhCCEEeccCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHHhC-CCCccEEEEEcCCCCCc-Cc--
Confidence 99999999999999999999999999999999987532 1122222211 2 455566654322100 00
Q ss_pred hcCceEeeHHHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEE
Q 010568 194 KYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVS 273 (507)
Q Consensus 194 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~ 273 (507)
.......|++++.... .........++++++|+|||||||.||+|+++|.+++...... ....+++..+|++++
T Consensus 210 -~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~s~~~~~~~~~~~----~~~~~~~~~~d~~~~ 283 (625)
T TIGR02188 210 -VEGRDVWWHDLMAKAS-AYCEPEPMDSEDPLFILYTSGSTGKPKGVLHTTGGYLLYAAMT----MKYVFDIKDGDIFWC 283 (625)
T ss_pred -cccccccHHHHHhhcC-CCCCceecCCCCceEEEecCCCCCCCCeEEECccHhHHHHHHH----HHhccCCCCCcEEEE
Confidence 0011235666665432 1222334567899999999999999999999999987554432 122336788999999
Q ss_pred ecChHHHHHHHH-HHHHHHcCCEEEEecC-----CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHH
Q 010568 274 YLPLAHIFDRAI-EEVFISNGAAIGFWRG-----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLF 347 (507)
Q Consensus 274 ~~pl~h~~g~~~-~~~~l~~G~~v~l~~~-----~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~ 347 (507)
..|++|..+... ++.++..|+++++++. ++..+++.|+++++|+++++|++++.|.+.....
T Consensus 284 ~~~~~~~~g~~~~~~~~l~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~------------ 351 (625)
T TIGR02188 284 TADVGWITGHSYIVYGPLANGATTVMFEGTPTYPDPGRFWEIIEKHKVTIFYTAPTAIRALMRLGDEW------------ 351 (625)
T ss_pred CCCchhhhccHHHHHHHHHcCCeEEEECCCCCCCChhHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcc------------
Confidence 999999988755 7788999999999753 7899999999999999999999999886521100
Q ss_pred HHHHHhHHhhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhC---CcEEeecccccCcc
Q 010568 348 NIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVAC---AHVLQGYGLTETCA 424 (507)
Q Consensus 348 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~---~~v~~~YG~tE~~~ 424 (507)
.++.++ ++||.++++|+++++++.+++.+.++ +++++.||+||+++
T Consensus 352 -----------------------~~~~~l--------~~lr~i~~~G~~l~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~ 400 (625)
T TIGR02188 352 -----------------------VKKHDL--------SSLRLLGSVGEPINPEAWMWYYKVVGKERCPIVDTWWQTETGG 400 (625)
T ss_pred -----------------------cccCCc--------cceeEEEEecCCCCHHHHHHHHHHcCCCCCceEecccccccCC
Confidence 011111 38999999999999999999998875 78999999999988
Q ss_pred ceeccCCCC-CccCCcccccccCceEEEeecCCCccccCCCCCCceEEEec--CCccccccCChhhhhhhc---ccCcee
Q 010568 425 GTFVSLPNE-MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKG--STVFSGYYKREDLTKEVM---VDGWFH 498 (507)
Q Consensus 425 ~~~~~~~~~-~~~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g--~~v~~gY~~~~~~~~~~~---~dgw~~ 498 (507)
.++...+.. ...++++|+|+||++++|+| ++++.++ +.|+.|||+|+| |+++.|||++++.+.+.+ .+|||+
T Consensus 401 ~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d-~~g~~~~-~~g~~GeL~v~~p~p~~~~gy~~~~~~~~~~~~~~~~g~~~ 478 (625)
T TIGR02188 401 IMITPLPGATPTKPGSATLPFFGIEPAVVD-EEGNPVE-GPGEGGYLVIKQPWPGMLRTIYGDHERFVDTYFSPFPGYYF 478 (625)
T ss_pred ceeecCCCCCCcCCCcccCCcCCceEEEEC-CCCCCCC-CCCCeEEEEEccCCCcccccccCChHHHHHHHhccCCCEEE
Confidence 766544332 33458999999999999999 8777665 256899999999 689999999999887776 389999
Q ss_pred ec-cEEEecC
Q 010568 499 TG-MGVWEQL 507 (507)
Q Consensus 499 TG-lg~~d~d 507 (507)
|| +|++|+|
T Consensus 479 TGDl~~~d~d 488 (625)
T TIGR02188 479 TGDGARRDKD 488 (625)
T ss_pred CCceEEEcCC
Confidence 99 9999986
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501. |
| >PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-52 Score=425.01 Aligned_cols=386 Identities=28% Similarity=0.475 Sum_probs=299.0
Q ss_pred HHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHHHHHHhcCCE
Q 010568 50 FRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLH 129 (507)
Q Consensus 50 l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~ 129 (507)
|+++++++||++|+++. +. +++||+||.++++++|..|+++|+++||+|+|+++|+++++++++||+++|++
T Consensus 1 f~~~a~~~pd~~a~~~~---~~-----~~~Ty~~l~~~v~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~~A~~~~G~~ 72 (417)
T PF00501_consen 1 FERQAQRYPDRIALIDD---EG-----RSLTYKQLYERVRKLAAALRKLGVKKGDRVAILLPNSIEFVVAFLACLRAGAI 72 (417)
T ss_dssp HHHHHHHSTTSEEEEET---TT-----EEEEHHHHHHHHHHHHHHHHHTTSSTTSEEEEEESSSHHHHHHHHHHHHTT-E
T ss_pred ChhHHhhCCCceEEEEC---CC-----EEEEHHHHHHHHHHHhhHHHHhCCCccccccccCCccceeeeeeccccccccc
Confidence 68999999999999961 12 68999999999999999999999999999999999999999999999999999
Q ss_pred EeeccCCCChHHHHHHHhhcCccEEEe----cCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCceEeeHHHH
Q 010568 130 CVPLYDTLGAGAVEFIICHSGVSIAFV----EEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEF 205 (507)
Q Consensus 130 ~v~l~~~~~~~~l~~~l~~~~~~~vi~----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l 205 (507)
++|++|.++.+++.++++.+++++||+ +......+....... .....++.++...... .+.+
T Consensus 73 ~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-------------~~~~ 138 (417)
T PF00501_consen 73 PVPLDPSLSEDELRHILRQSGPKVIITSEAVDSEPLKKLKSIFKQE-DPSSSIIILDRDDLPK-------------KEAL 138 (417)
T ss_dssp EEEEETTSSHHHHHHHHHHHTESEEEECHHHSCHHHHHHHHHHTTS-TTTEEEEEESHSSCTT-------------CHHH
T ss_pred ccccccccccccccccccccceeEEEEeccccccccccchhhhccc-cccccccccccccccc-------------cccc
Confidence 999999999999999999999999997 222222222222211 3344555555322110 0111
Q ss_pred HhccccCCCCCCC-CCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHH-
Q 010568 206 LQLGENKQFDLPV-KKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDR- 283 (507)
Q Consensus 206 ~~~~~~~~~~~~~-~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~- 283 (507)
.......... .. ..++++++++|||||||.||+|.++|.+++..+..+. +.. ..+++ |++++.+|++|.+++
T Consensus 139 ~~~~~~~~~~-~~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~--~~~-~~~~~--d~~l~~~p~~~~~g~~ 212 (417)
T PF00501_consen 139 KSASLSDEPQ-SPEDSPDDPAFILFTSGTTGKPKGVVLTHRNLLAQARALA--LPE-YFGLG--DRILSFLPLSHIFGLI 212 (417)
T ss_dssp HHHHHCHCSH-STTHTTTSEEEEEEESSSSSSEEEEEEEHHHHHHHHHHHH--HHH-TTTTT--TEEEESS-TTSHHHHH
T ss_pred cccccccccc-cCCCCccceeEeeccccccccccccccccccccccccccc--ccc-ccccC--ceEEeecccccccccc
Confidence 1111000000 00 0568999999999999999999999999999888754 111 11223 699999999999999
Q ss_pred HHHHHHHHcCCEEEEecC-C---HHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhHHhhhh
Q 010568 284 AIEEVFISNGAAIGFWRG-D---VKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLK 359 (507)
Q Consensus 284 ~~~~~~l~~G~~v~l~~~-~---~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 359 (507)
..++.++..|+++++.+. . ++.+++.++++++|+++++|.+++.+++..+.. ..
T Consensus 213 ~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~-~~--------------------- 270 (417)
T PF00501_consen 213 SALLAALFSGATLVLPSPFDLFDPESLLELISRYKPTILFAVPSMLEALLQSPEEK-TK--------------------- 270 (417)
T ss_dssp HHHHHHHHCTSEEEEESSHHHHHHHHHHHHHHHHTESEEEEEHHHHHHHHHHHHTT-HH---------------------
T ss_pred ccccccccccccccccccccccccccchhccccccccccccccccccccccccccc-cc---------------------
Confidence 678999999999999986 2 477899999999999999999999987621111 00
Q ss_pred cCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhCC-cEEeecccccCccceeccC-CCCCccC
Q 010568 360 KGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACA-HVLQGYGLTETCAGTFVSL-PNEMSMI 437 (507)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~~-~v~~~YG~tE~~~~~~~~~-~~~~~~~ 437 (507)
....++ +++|.+++||+++++++.+++++.++. ++++.||+||++.+++... .......
T Consensus 271 -----------~~~~~l--------~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~ 331 (417)
T PF00501_consen 271 -----------ISKKDL--------SSLRTVISGGEPLPPDLLRRLRKAFGNAPIINLYGSTETGSIATIRPPEDDIEKP 331 (417)
T ss_dssp -----------GTTTTG--------TT-SEEEEESST-CHHHHHHHHHHHTTSEEEEEEEEGGGSSEEEEEETTTHHSST
T ss_pred -----------cccccc--------ccccccccccccCChhhccccccccccccceecccccccceeeeccccccccccc
Confidence 000011 369999999999999999999999986 9999999999999887664 2333455
Q ss_pred CcccccccCceEEEeecCC-CccccCCCCCCceEEEecCCccccccCChhhhhhhcc-cCceeec-cEEEecC
Q 010568 438 GTVGPPVPNVDVCLESVPE-MEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV-DGWFHTG-MGVWEQL 507 (507)
Q Consensus 438 ~s~G~p~pg~~i~ivd~~~-~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~-dgw~~TG-lg~~d~d 507 (507)
+++|.|+||++++|+| ++ ++.+ +.|+.|||+|+||.++.||+++|+.++++|. +|||+|| +|++|+|
T Consensus 332 ~~~G~~~~~~~~~ivd-~~~~~~~--~~g~~Gei~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~g~~d~~ 401 (417)
T PF00501_consen 332 GSVGKPLPGVEVKIVD-PNTGEPL--PPGEPGEIVIRGPNVFSGYYNDPELTAEAFIDDGWYRTGDLGRLDED 401 (417)
T ss_dssp TSEBEESTTEEEEEEC-TTTSSBE--STTSEEEEEEESTTSBSEETTBHHHHHHHEETTSEEEEEEEEEEETT
T ss_pred cccccccccccccccc-ccccccc--cccccccccccCCccceeeeccccccccccccccceecceEEEECCC
Confidence 8999999999999999 65 5555 4558999999999999999999999999995 4899999 9999975
|
This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A .... |
| >PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-51 Score=429.51 Aligned_cols=394 Identities=23% Similarity=0.256 Sum_probs=317.7
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHHHH
Q 010568 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (507)
Q Consensus 43 ~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (507)
..|+.++|++.++.+||++|+++. +...+.++.+||.||.++++++|++|.+.|+++||+|+++++|++++++++||
T Consensus 23 ~~~l~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~Val~~~n~~e~~~~~la 99 (547)
T PRK13295 23 DRTINDDLDACVASCPDKTAVTAV---RLGTGAPRRFTYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEFTVLYLA 99 (547)
T ss_pred CCCHHHHHHHHHHHCCCceEEEec---CCCccccceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHH
Confidence 367999999999999999999876 43344557899999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCCh-----hHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCc
Q 010568 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKI-----PEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGL 197 (507)
Q Consensus 123 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 197 (507)
|+++|++++|++|.++.+++.++++.++++++|+++... ..+.+... ..+.+..++.++...
T Consensus 100 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------------ 166 (547)
T PRK13295 100 CSRIGAVLNPLMPIFRERELSFMLKHAESKVLVVPKTFRGFDHAAMARRLRP-ELPALRHVVVVGGDG------------ 166 (547)
T ss_pred HHhcCcEEeccccccCHHHHHHHHHhcCceEEEEeccccCcchHHHHHHHhh-hCCCcceEEEecCCC------------
Confidence 999999999999999999999999999999999987541 11111111 124455566554321
Q ss_pred eEeeHHHHHhcccc-------CCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcE
Q 010568 198 AVYSWDEFLQLGEN-------KQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDV 270 (507)
Q Consensus 198 ~~~~~~~l~~~~~~-------~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~ 270 (507)
..++.+++..... .........++++++++|||||||.||+|.++|.+++..+......+ ++..+++
T Consensus 167 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~ 240 (547)
T PRK13295 167 -ADSFEALLITPAWEQEPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERL-----GLGADDV 240 (547)
T ss_pred -ccCHHHHhhCCccccccccccccccCCCCCcceeEEEeCCCCCCCCCEEEeccHHHHHHHHHHHHHh-----CCCCCCe
Confidence 1234444322100 01111234568999999999999999999999999988887744433 6788999
Q ss_pred EEEecChHHHHHHHH-HHHHHHcCCEEEEecC-CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHH
Q 010568 271 YVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFN 348 (507)
Q Consensus 271 ~l~~~pl~h~~g~~~-~~~~l~~G~~v~l~~~-~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~ 348 (507)
+++.+|++|.+++.. ++.++..|+++++.+. ++..+++.++++++|++.++|+++..+.........
T Consensus 241 ~l~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~~----------- 309 (547)
T PRK13295 241 ILMASPMAHQTGFMYGLMMPVMLGATAVLQDIWDPARAAELIRTEGVTFTMASTPFLTDLTRAVKESGR----------- 309 (547)
T ss_pred EEEecCchhhhhHHHHHHHHHHcCCeEEeCCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhcccccCC-----------
Confidence 999999999998765 7788999999998876 899999999999999999999999988653211100
Q ss_pred HHHHhHHhhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhCCcEEeecccccCccceec
Q 010568 349 IAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFV 428 (507)
Q Consensus 349 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~~~v~~~YG~tE~~~~~~~ 428 (507)
..+++|.+++||+++++++.+.+.+.++.++++.||+||++.++..
T Consensus 310 ----------------------------------~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~ 355 (547)
T PRK13295 310 ----------------------------------PVSSLRTFLCAGAPIPGALVERARAALGAKIVSAWGMTENGAVTLT 355 (547)
T ss_pred ----------------------------------CcccceEEEEecCCCCHHHHHHHHHHhCCCeEEeccCCCCCCeeec
Confidence 0137999999999999999999999889999999999999876655
Q ss_pred cCCCC-CccCCcccccccCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhcccCceeec-cEEEec
Q 010568 429 SLPNE-MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG-MGVWEQ 506 (507)
Q Consensus 429 ~~~~~-~~~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~dgw~~TG-lg~~d~ 506 (507)
..... .....++|+|+||++++|+| ++++..+ .|+.|||+|+|+.++.||+++++.++.. .||||+|| +|++|+
T Consensus 356 ~~~~~~~~~~~~~G~~~~~~~v~i~d-~~~~~~~--~g~~Gel~v~g~~~~~gY~~~~~~t~~~-~~g~~~TGD~~~~~~ 431 (547)
T PRK13295 356 KLDDPDERASTTDGCPLPGVEVRVVD-ADGAPLP--AGQIGRLQVRGCSNFGGYLKRPQLNGTD-ADGWFDTGDLARIDA 431 (547)
T ss_pred cCCCcchhccCccccccCCcEEEEEC-CCCCCCC--CCCCCeEEEEcCcccccccCCccccccC-CCCCeecceEEEEcC
Confidence 44322 22346899999999999999 7776554 4599999999999999999999988766 68999999 999987
Q ss_pred C
Q 010568 507 L 507 (507)
Q Consensus 507 d 507 (507)
|
T Consensus 432 ~ 432 (547)
T PRK13295 432 D 432 (547)
T ss_pred C
Confidence 5
|
|
| >TIGR02316 propion_prpE propionate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-51 Score=437.33 Aligned_cols=407 Identities=14% Similarity=0.160 Sum_probs=312.6
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHHHH
Q 010568 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (507)
Q Consensus 43 ~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (507)
.+...++|+++++.+|+++|+++. +..++..+.+||+||.++++++|++|+++|+++||+|+++++|++++++++||
T Consensus 51 ~n~~~~~l~~~~~~~p~~~Al~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~n~~e~v~~~lA 127 (628)
T TIGR02316 51 TNLCHNALDRHLDERGEQLALVTV---SSETGQERTLTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAMLA 127 (628)
T ss_pred eeHHHHHHHHHhCcCCCCeEEEEE---cCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 455678898888899999999975 43344457899999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCCh---------hHHhhcCCCCCCCccEEEEecCCChhhHHHHh
Q 010568 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKI---------PEMLKTFPKTTEHLKTIVSFSKVKPEQREEIE 193 (507)
Q Consensus 123 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 193 (507)
|+++|++++|+++.++.+++..+++.++++++|+++... ..+.............+++++...... .
T Consensus 128 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~----~ 203 (628)
T TIGR02316 128 CARIGAIHSVVFGGFASHSLALRIDDATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQHPPPHVLLVDRGLAPM----R 203 (628)
T ss_pred HHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECCccccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCc----C
Confidence 999999999999999999999999999999999976431 111111111112344566665321100 0
Q ss_pred hcCceEeeHHHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHh-hhhhhhhhccccCCCCcEEE
Q 010568 194 KYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIA-GVKCLLESVNEKLTSEDVYV 272 (507)
Q Consensus 194 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~-~~~~~~~~~~~~~~~~d~~l 272 (507)
........|+++.........+.....++++++|+|||||||.||+|+++|.+++.... .+.. .+++.++|+++
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~-----~~~~~~~d~~~ 278 (628)
T TIGR02316 204 LIPGRDVDYAALRTQHEDAQVPVEWLESNEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWA-----IFGIRAGQVMF 278 (628)
T ss_pred cccCccccHHHHhhccccCCCCceecCCCCcEEEEECCCCCCCCceEEECCcHHHHHHHHHHHH-----hcCCCCCcEEE
Confidence 00011245666655432222222334678999999999999999999999999764433 3222 23678899999
Q ss_pred EecChHHHHHHHH-HHHHHHcCCEEEEecC-----CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHH
Q 010568 273 SYLPLAHIFDRAI-EEVFISNGAAIGFWRG-----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTL 346 (507)
Q Consensus 273 ~~~pl~h~~g~~~-~~~~l~~G~~v~l~~~-----~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~ 346 (507)
+.+|++|..++.. ++.+|+.|++++++++ ++..+++.|+++++|+++++|++++.|.+.....
T Consensus 279 ~~~~~~~~~g~~~~~~~~L~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~----------- 347 (628)
T TIGR02316 279 SASDVGWVVGHSYIVYAPLLAGAATVLYEGLPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAAW----------- 347 (628)
T ss_pred EcCCCCeeehhhHHHHHHHhccceEEEeCCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcc-----------
Confidence 9999999988754 7788999999999863 7899999999999999999999998875421000
Q ss_pred HHHHHHhHHhhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhCCcEEeecccccCccce
Q 010568 347 FNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGT 426 (507)
Q Consensus 347 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~~~v~~~YG~tE~~~~~ 426 (507)
....++ ++||.+++||+++++++.+++++.++..+++.||+||++..+
T Consensus 348 ------------------------~~~~~l--------~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~~~yG~TE~~~~~ 395 (628)
T TIGR02316 348 ------------------------LRKHDL--------SSLHWLFLAGEPLDEPTAHWITDGLGKPVIDNYWQTETGWPV 395 (628)
T ss_pred ------------------------cccCCc--------cceeEEEEecCCCCHHHHHHHHHHhCCCEEecccccccCcee
Confidence 001111 389999999999999999999998899999999999998654
Q ss_pred eccCCCC---CccCCcccccccCceEEEeecC-CCccccCCCCCCceEEEecC---CccccccCChhhhhhhc----ccC
Q 010568 427 FVSLPNE---MSMIGTVGPPVPNVDVCLESVP-EMEYDALSSTPRGEVCVKGS---TVFSGYYKREDLTKEVM----VDG 495 (507)
Q Consensus 427 ~~~~~~~---~~~~~s~G~p~pg~~i~ivd~~-~~~~~~~~~g~~Gel~v~g~---~v~~gY~~~~~~~~~~~----~dg 495 (507)
+...... ....+++|+|+||++++|+| + +++.+ +.|+.|||+++|| +++.|||++++.+.+.+ .++
T Consensus 396 ~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d-~~~g~~~--~~g~~Gel~v~gp~~~g~~~~~~~~~~~~~~~~~~~~~~~ 472 (628)
T TIGR02316 396 LAIMPGLDLKPVKLGSPGLPMYGYHLRVLD-EATGRPC--GPNEKGVLTVVPPLPPGCLSTVWGDDARFLKTYWSHFKRP 472 (628)
T ss_pred ecCCCCCCcCCCCCCCcccCcCCceEEEEE-CCCCCCC--CCCCcEEEEEecCCCccccccccCChHHHHHhhhhcCCCC
Confidence 4333221 23358899999999999999 6 45554 4568999999998 57899999998777654 477
Q ss_pred ceeec-cEEEecC
Q 010568 496 WFHTG-MGVWEQL 507 (507)
Q Consensus 496 w~~TG-lg~~d~d 507 (507)
||+|| +|++|+|
T Consensus 473 ~~~TGD~g~~d~d 485 (628)
T TIGR02316 473 LYSSFDWGIRDED 485 (628)
T ss_pred EEECCceEEEcCC
Confidence 99999 9999986
|
This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. |
| >PRK04319 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-51 Score=432.27 Aligned_cols=398 Identities=18% Similarity=0.264 Sum_probs=321.9
Q ss_pred CCCCHHHHHHHHHH-hCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHH
Q 010568 42 GMESCWDVFRMAVE-RNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120 (507)
Q Consensus 42 ~~~tl~~~l~~~~~-~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~ 120 (507)
..+.+.++++++++ .+||++|+.+. +.. ..+.+||+||.++++++|++|.++|+++||+|+++++|++++++++
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~a~~~~---~~~--~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~ 115 (570)
T PRK04319 41 KVNIAYEAIDRHADGGRKDKVALRYL---DAS--RKEKYTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFAL 115 (570)
T ss_pred ceeHHHHHHHHhhccCCCCceEEEEE---CCC--CceeecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHH
Confidence 44566788988887 47999999876 432 2367999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCceEe
Q 010568 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVY 200 (507)
Q Consensus 121 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 200 (507)
|||+++|++++|+++.++.+++.++++.++++.+|++......... ...+..+.++.++.... ......
T Consensus 116 la~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--------~~~~~~ 184 (570)
T PRK04319 116 LGALKNGAIVGPLFEAFMEEAVRDRLEDSEAKVLITTPALLERKPA---DDLPSLKHVLLVGEDVE--------EGPGTL 184 (570)
T ss_pred HHHHHcCcEEcccccccCHHHHHHHHHccCCcEEEEChhhhhccch---hcCCCceEEEEECCCcC--------CCcCcc
Confidence 9999999999999999999999999999999999998765443221 12244556665553211 011234
Q ss_pred eHHHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHH
Q 010568 201 SWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHI 280 (507)
Q Consensus 201 ~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~ 280 (507)
++.+++..... ........++++++++|||||||.||+|.++|.+++..+...... .++..+|++++..|++|.
T Consensus 185 ~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~-----~~~~~~d~~~~~~~~~~~ 258 (570)
T PRK04319 185 DFNALMEQASD-EFDIEWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYV-----LDLHEDDVYWCTADPGWV 258 (570)
T ss_pred CHHHHHhhcCC-cCCccccCCCCCEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHh-----cCCCCCceEEecCChHHh
Confidence 56666554322 222334467899999999999999999999999998877764433 367889999999999999
Q ss_pred HHHHH-HHHHHHcCCEEEEecC--CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhHHhh
Q 010568 281 FDRAI-EEVFISNGAAIGFWRG--DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHN 357 (507)
Q Consensus 281 ~g~~~-~~~~l~~G~~v~l~~~--~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (507)
.+... ++.++..|+++++... ++..+++.|+++++|+++++|++++.+++.....
T Consensus 259 ~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~---------------------- 316 (570)
T PRK04319 259 TGTSYGIFAPWLNGATNVIDGGRFSPERWYRILEDYKVTVWYTAPTAIRMLMGAGDDL---------------------- 316 (570)
T ss_pred hCchHHHHHHHhcCceEEEECCCCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcCCcc----------------------
Confidence 88765 7788999999998753 8999999999999999999999999886521100
Q ss_pred hhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhCCcEEeecccccCccceeccCCCCCccC
Q 010568 358 LKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMI 437 (507)
Q Consensus 358 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~ 437 (507)
....++ +++|.+++||+++++++.+++++.++.++++.||+||+++.++.........+
T Consensus 317 -------------~~~~~~--------~~lr~~~~gG~~l~~~~~~~~~~~~g~~i~~~YG~tE~~~~~~~~~~~~~~~~ 375 (570)
T PRK04319 317 -------------VKKYDL--------SSLRHILSVGEPLNPEVVRWGMKVFGLPIHDNWWMTETGGIMIANYPAMDIKP 375 (570)
T ss_pred -------------cccCCc--------ccceEEEEcccCCCHHHHHHHHHHhCCCeEeceeecccCCEEEecCCCCCCCC
Confidence 000011 37999999999999999999999899999999999999887665444333445
Q ss_pred CcccccccCceEEEeecCCCccccCCCCCCceEEEec--CCccccccCChhhhhhhcccCceeec-cEEEecC
Q 010568 438 GTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKG--STVFSGYYKREDLTKEVMVDGWFHTG-MGVWEQL 507 (507)
Q Consensus 438 ~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g--~~v~~gY~~~~~~~~~~~~dgw~~TG-lg~~d~d 507 (507)
+++|+|+||++++|+| +++..+ +.|+.|||+++| +.++.|||++++.+.+.|.+|||+|| +|++|+|
T Consensus 376 ~~~G~p~~g~~~~i~d-~~~~~~--~~g~~Gel~i~~~~~~~~~GY~~~~~~~~~~~~~gw~~TGDl~~~~~~ 445 (570)
T PRK04319 376 GSMGKPLPGIEAAIVD-DQGNEL--PPNRMGNLAIKKGWPSMMRGIWNNPEKYESYFAGDWYVSGDSAYMDED 445 (570)
T ss_pred CcCcCCCCCCEEEEEC-CCCCCC--CCCCceEEEEcCCCChHHhHhcCCHHHhhhhhcCCceEeCcEEEECCC
Confidence 8999999999999999 777765 456999999997 89999999999999999999999999 9999875
|
|
| >PRK00174 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-51 Score=435.95 Aligned_cols=404 Identities=18% Similarity=0.266 Sum_probs=314.7
Q ss_pred CHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHHHHHH
Q 010568 45 SCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACN 124 (507)
Q Consensus 45 tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~ 124 (507)
...++|+++++++||++|+++. +...+..+++||+||.++++++|++|+++|+++||+|+++++|++++++++|||+
T Consensus 68 ~~~~~l~~~~~~~p~~~Al~~~---~~~~~~~~~lTy~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~ 144 (637)
T PRK00174 68 VSYNCLDRHLKTRGDKVAIIWE---GDDPGDSRKITYRELHREVCRFANALKSLGVKKGDRVAIYMPMIPEAAVAMLACA 144 (637)
T ss_pred HHHHHHHHhhccCCCCeEEEEE---CCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHH
Confidence 3467888888999999999975 4333345789999999999999999999999999999999999999999999999
Q ss_pred hcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCCh---------hHHhhcCCCCCCCccEEEEecCCChhhHHHHhhc
Q 010568 125 ALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKI---------PEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKY 195 (507)
Q Consensus 125 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 195 (507)
++|++++|++|.++.+++.++++.++++++|+++... ..+...... .+.++.+++++...... ...
T Consensus 145 ~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~ 219 (637)
T PRK00174 145 RIGAVHSVVFGGFSAEALADRIIDAGAKLVITADEGVRGGKPIPLKANVDEALAN-CPSVEKVIVVRRTGGDV----DWV 219 (637)
T ss_pred HcCCEEEecCCCCCHHHHHHHHHhcCCcEEEEcCccccCCcccchHHHHHHHHHh-CCCccEEEEEcCCCCCc----CcC
Confidence 9999999999999999999999999999999986532 111111111 14455666654321100 000
Q ss_pred CceEeeHHHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEec
Q 010568 196 GLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYL 275 (507)
Q Consensus 196 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~ 275 (507)
......|+++.... ..........++++++|+|||||||.||+|+++|.+++...... ....+++..+|++++.+
T Consensus 220 ~~~~~~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~----~~~~~~~~~~d~~~~~~ 294 (637)
T PRK00174 220 EGRDLWWHELVAGA-SDECEPEPMDAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAMT----MKYVFDYKDGDVYWCTA 294 (637)
T ss_pred CCCcccHHHHHhhc-CCCCCccccCCCCcEEEEECCCCCCCCceEEeCcchhHHHHHHH----HHhccCCCCCcEEEEcC
Confidence 01233466665432 12222334567899999999999999999999999987654432 12223677889999999
Q ss_pred ChHHHHHHHH-HHHHHHcCCEEEEecC-----CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHH
Q 010568 276 PLAHIFDRAI-EEVFISNGAAIGFWRG-----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNI 349 (507)
Q Consensus 276 pl~h~~g~~~-~~~~l~~G~~v~l~~~-----~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~ 349 (507)
|++|..+... ++.+++.|+++++.+. ++..+++.|+++++|++.++|++++.+++.....
T Consensus 295 ~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~-------------- 360 (637)
T PRK00174 295 DVGWVTGHSYIVYGPLANGATTLMFEGVPNYPDPGRFWEVIDKHKVTIFYTAPTAIRALMKEGDEH-------------- 360 (637)
T ss_pred CchHhhhhHHHHHHHHHcCCEEEEECCCCCCCChHHHHHHHHhcCCeEEeecHHHHHHHHhcCCcc--------------
Confidence 9999988764 7888999999998753 7899999999999999999999999886521100
Q ss_pred HHHhHHhhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhC---CcEEeecccccCccce
Q 010568 350 AYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVAC---AHVLQGYGLTETCAGT 426 (507)
Q Consensus 350 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~---~~v~~~YG~tE~~~~~ 426 (507)
....++ ++||.+++||+++++++.+++.+.++ +++++.||+||+++.+
T Consensus 361 ---------------------~~~~~~--------~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~ 411 (637)
T PRK00174 361 ---------------------PKKYDL--------SSLRLLGSVGEPINPEAWEWYYKVVGGERCPIVDTWWQTETGGIM 411 (637)
T ss_pred ---------------------cccCCc--------cceeEEEEeCCCCCHHHHHHHHHHhCCCCCceEecccccccCCce
Confidence 000011 37999999999999999999998875 7899999999998876
Q ss_pred eccCCCC-CccCCcccccccCceEEEeecCCCccccCCCCCCceEEEec--CCccccccCChhhhhhhc---ccCceeec
Q 010568 427 FVSLPNE-MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKG--STVFSGYYKREDLTKEVM---VDGWFHTG 500 (507)
Q Consensus 427 ~~~~~~~-~~~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g--~~v~~gY~~~~~~~~~~~---~dgw~~TG 500 (507)
....+.. ...++++|+|+||++++|+| ++++.++ .|+.|||+|+| |+++.|||++++.+.+.+ .+|||+||
T Consensus 412 ~~~~~~~~~~~~~~vG~p~~g~~~~i~d-~~g~~~~--~g~~Gel~v~g~~p~~~~gy~~~~~~~~~~~~~~~~g~~~TG 488 (637)
T PRK00174 412 ITPLPGATPLKPGSATRPLPGIQPAVVD-EEGNPLE--GGEGGNLVIKDPWPGMMRTIYGDHERFVKTYFSTFKGMYFTG 488 (637)
T ss_pred EecCCCCCCcCCCcccCCCCCceEEEEC-CCCCCCC--CCCcEEEEEcCCCCcccccccCCHHHHHHhhhcCCCCEEECC
Confidence 5544332 23357999999999999999 8877665 45899999999 689999999999887766 47999999
Q ss_pred -cEEEecC
Q 010568 501 -MGVWEQL 507 (507)
Q Consensus 501 -lg~~d~d 507 (507)
+|++|+|
T Consensus 489 Dl~~~d~d 496 (637)
T PRK00174 489 DGARRDED 496 (637)
T ss_pred ceEEEcCC
Confidence 9999976
|
|
| >COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-52 Score=385.48 Aligned_cols=400 Identities=16% Similarity=0.192 Sum_probs=337.2
Q ss_pred eeecCccCCCCCCCCCCCCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCE
Q 010568 26 VYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGK 105 (507)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~ 105 (507)
-||....|. .+|+.++|.++++++||++|+++. + +.+||+||.++++++|..|+++|+++||+
T Consensus 18 ~YR~~GyW~--------d~~l~d~L~~~A~~~pdriAv~d~-----~----~~~sY~eLdqr~d~LAa~l~~lGi~~Gd~ 80 (542)
T COG1021 18 RYREKGYWQ--------DRTLTDILTDHAARYPDRIAVIDG-----E----RRLSYAELDQRADRLAAGLRRLGIKPGDT 80 (542)
T ss_pred HHHhcCccc--------CCcHHHHHHHHHhhcCCceEEecC-----c----ccccHHHHHHHHHHHHHHHHhcCCCCCCE
Confidence 466666664 367999999999999999999954 3 45999999999999999999999999999
Q ss_pred EEEEeCCchhhHHHHHHHHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCCh----hHHhhcCCCCCCCccEEEEe
Q 010568 106 CGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKI----PEMLKTFPKTTEHLKTIVSF 181 (507)
Q Consensus 106 V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~----~~~~~~~~~~~~~~~~v~~~ 181 (507)
|.+.+||..+|++++||++++|+.+|.--|+....+|..+.+.+.++.+|++.... ..+.+.+....+.++.+++.
T Consensus 81 vlvQLpN~~ef~~~~FALlrlGv~PVlALpsHr~~Ei~~f~~~~e~~~~i~~~~~~gFd~~~~ar~~~a~~~tlr~v~v~ 160 (542)
T COG1021 81 VLVQLPNVAEFYITFFALLRLGVAPVLALPSHRASELGAFASQIEAALLIVARQHSGFDYRPFARELVAKHPTLRHVIVA 160 (542)
T ss_pred EEEECCchHHHHHHHHHHHHcCcchhhccchhhHHHHHHHHHhhcchheeechhhcccCcHHHHHHHHhhCCcceEEEEc
Confidence 99999999999999999999999999999999999999999999999999987532 23333333344788888887
Q ss_pred cCCChhhHHHHhhcCceEeeHHHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhc
Q 010568 182 SKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESV 261 (507)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~ 261 (507)
++... ....+..+........+.++.+++++++.+.+.||||.||-+..+|.....++..-.++.
T Consensus 161 ge~~~------------~~~~~~~~~~~a~~~~~a~~~~~~~vA~fqLSGGTTGtPKLIPRtH~DY~Ysv~aSaEiC--- 225 (542)
T COG1021 161 GEAEH------------PSVLEAALCHPAGLFTPAPPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEIC--- 225 (542)
T ss_pred cCCCC------------cchhhhhhhCccccCCcCCCCCCCceEEEEecCCCCCCCccccccccceeeeeeehhhhh---
Confidence 54321 123344444444555556778899999999999999999999999999999998844444
Q ss_pred cccCCCCcEEEEecChHHHHHHHH--HHHHHHcCCEEEEecC-CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhc
Q 010568 262 NEKLTSEDVYVSYLPLAHIFDRAI--EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISS 338 (507)
Q Consensus 262 ~~~~~~~d~~l~~~pl~h~~g~~~--~~~~l~~G~~v~l~~~-~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~ 338 (507)
+++..+++++.+|..|-+.+.. .++.++.|+++|+.+. +++..+.+|++++||+..++|.....+++..+..
T Consensus 226 --~~~~~tvyL~~LP~AHNfplssPG~LGv~~agG~VVla~~psp~~~F~lIerh~Vt~tALVPpla~LWlqa~e~~--- 300 (542)
T COG1021 226 --GFDQQTVYLCALPAAHNFPLSSPGALGVFLAGGTVVLAPDPSPELCFPLIERHGVTVTALVPPLASLWLQAAEWE--- 300 (542)
T ss_pred --CcCccceEEEecccccCCCCCCcchhheeeeccEEEECCCCCHHHHHHHHHHhccceEEeccHHHHHHHHhhhcc---
Confidence 8999999999999999999875 7888999999999876 9999999999999999999999998887643321
Q ss_pred cchhHHHHHHHHHHhHHhhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhCCcEEeecc
Q 010568 339 GGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYG 418 (507)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~~~v~~~YG 418 (507)
..++ +|||.+.+||+.+++++.+++...+|+.+-+.||
T Consensus 301 ----------------------------------~~~L--------sSLrllQVGGarl~~~~Arrv~~~lgC~LQQVFG 338 (542)
T COG1021 301 ----------------------------------RADL--------SSLRLLQVGGARLSATLARRVPAVLGCQLQQVFG 338 (542)
T ss_pred ----------------------------------cCCc--------hheeEEeecCcccCHHHHhhchhhhCchHHHHhh
Confidence 1122 3899999999999999999999999999999999
Q ss_pred cccCccceeccCCCCCccCCcccccc-cCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhc-ccCc
Q 010568 419 LTETCAGTFVSLPNEMSMIGTVGPPV-PNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGW 496 (507)
Q Consensus 419 ~tE~~~~~~~~~~~~~~~~~s~G~p~-pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~-~dgw 496 (507)
|.|.-...+.-.........+.|+|+ |.-+++|+| .||++++. ||.|+|.++||..++|||+.|+.++++| .|||
T Consensus 339 MAEGLvnyTRLDDp~E~i~~TQGrPlsP~DEvrvvD-~dg~pv~p--GE~G~LltRGPYTirGYyrap~HNa~aF~a~GF 415 (542)
T COG1021 339 MAEGLVNYTRLDDPPEIIIHTQGRPLSPDDEVRVVD-ADGNPVAP--GEVGELLTRGPYTIRGYYRAPEHNARAFDADGF 415 (542)
T ss_pred hhhhhhcccccCCchHheeecCCCcCCCcceeEEec-CCCCCCCC--CCcceeeecCCeeeeeeccCchhhhhccCcCCc
Confidence 99975554444333344457899999 678999999 88886655 5999999999999999999999999999 8999
Q ss_pred eeec-cEEEecC
Q 010568 497 FHTG-MGVWEQL 507 (507)
Q Consensus 497 ~~TG-lg~~d~d 507 (507)
|+|| +.++|+|
T Consensus 416 YrsGD~V~~~~d 427 (542)
T COG1021 416 YRSGDLVRRDPD 427 (542)
T ss_pred eecCceeEecCC
Confidence 9999 9999986
|
|
| >PLN02574 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-50 Score=424.78 Aligned_cols=415 Identities=21% Similarity=0.284 Sum_probs=310.4
Q ss_pred CceeecCccCCCCCCCCCCCCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHH-CCCCC
Q 010568 24 GPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRT-CGVEE 102 (507)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~-~gv~~ 102 (507)
++++++..+...++ .....++.+.+... ..+|+++|+++. ++. .++||+||.++++++|++|.+ .|+++
T Consensus 22 ~~~~~~~~~~~~~~--~~~~~~~~~~l~~~-~~~~~~~a~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~~G~~~ 91 (560)
T PLN02574 22 TGIYSSKHPPVPLP--SDPNLDAVSFIFSH-HNHNGDTALIDS---STG----FSISYSELQPLVKSMAAGLYHVMGVRQ 91 (560)
T ss_pred CeeecCCCCCCCCC--CCCCCCHHHHHhcC-cccCCCCEEEEC---CCC----CcccHHHHHHHHHHHHHHHHHHhCCCC
Confidence 46666653221221 11233444443333 678999999864 322 359999999999999999999 99999
Q ss_pred CCEEEEEeCCchhhHHHHHHHHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEec
Q 010568 103 RGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFS 182 (507)
Q Consensus 103 gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~ 182 (507)
||+|+++++|++++++++|||+++|++++|++|..+.+++.++++.++++++|++.+....+.... . .++.++
T Consensus 92 gd~V~i~~~n~~~~~~~~la~~~~G~v~v~l~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~------~-~~~~~~ 164 (560)
T PLN02574 92 GDVVLLLLPNSVYFPVIFLAVLSLGGIVTTMNPSSSLGEIKKRVVDCSVGLAFTSPENVEKLSPLG------V-PVIGVP 164 (560)
T ss_pred CCEEEEECCCcchHHHHHHHHHHhCeEEeCcCcccCHHHHHHHHHhcCCEEEEECHHHHHHHHhcC------C-cEEecC
Confidence 999999999999999999999999999999999999999999999999999999877655443211 1 122222
Q ss_pred CCChhhHHHHhhcCceEeeHHHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhcc
Q 010568 183 KVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVN 262 (507)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~ 262 (507)
..... +........|++++..... ....+...++++++++|||||||.||+|.++|.++...+..+........
T Consensus 165 ~~~~~-----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~ 238 (560)
T PLN02574 165 ENYDF-----DSKRIEFPKFYELIKEDFD-FVPKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQY 238 (560)
T ss_pred ccccc-----ccCccCcccHHHHhhcCCc-ccccCCCCcCCEEEEEcCCCccCCCcEEEEeHHHHHHHHHHHHhcccccc
Confidence 11000 0000112345555544321 22233346789999999999999999999999999887765432111111
Q ss_pred ccCCCCcEEEEecChHHHHHHHH-HHHHHHcCCEEEEecC-CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccc
Q 010568 263 EKLTSEDVYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGG 340 (507)
Q Consensus 263 ~~~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~v~l~~~-~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~ 340 (507)
......++++..+|++|.+|+.. ++.++..|+++++.+. ++..+++.|+++++|+++++|+++..+++.....
T Consensus 239 ~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~----- 313 (560)
T PLN02574 239 EYPGSDNVYLAALPMFHIYGLSLFVVGLLSLGSTIVVMRRFDASDMVKVIDRFKVTHFPVVPPILMALTKKAKGV----- 313 (560)
T ss_pred ccCCCCcEEEEecchHHHHHHHHHHHHHHhcCCEEEEecCCCHHHHHHHHHHcCCeEEecCCHHHHHHHhCcccc-----
Confidence 12345689999999999999876 5567889999988876 9999999999999999999999999986521100
Q ss_pred hhHHHHHHHHHHhHHhhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhh-CCcEEeeccc
Q 010568 341 LLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGL 419 (507)
Q Consensus 341 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~-~~~v~~~YG~ 419 (507)
... ..+++|.+++||+++++++.+.+.+.+ ++.+++.||+
T Consensus 314 -------------------------------~~~--------~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~v~~~YG~ 354 (560)
T PLN02574 314 -------------------------------CGE--------VLKSLKQVSCGAAPLSGKFIQDFVQTLPHVDFIQGYGM 354 (560)
T ss_pred -------------------------------ccC--------ccccceEEEEecccCCHHHHHHHHHHCCCCcEEecccc
Confidence 000 013789999999999999999998887 6899999999
Q ss_pred ccCccceeccCCC-CCccCCcccccccCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhc-ccCce
Q 010568 420 TETCAGTFVSLPN-EMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWF 497 (507)
Q Consensus 420 tE~~~~~~~~~~~-~~~~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~-~dgw~ 497 (507)
||++.+++..... .....+++|+|+||++++|+|.+++. +++.|+.|||+|+|++++.||+++++.+.+.| .||||
T Consensus 355 tE~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~g~--~~~~g~~Gei~v~g~~~~~GY~~~~~~t~~~~~~~g~~ 432 (560)
T PLN02574 355 TESTAVGTRGFNTEKLSKYSSVGLLAPNMQAKVVDWSTGC--LLPPGNCGELWIQGPGVMKGYLNNPKATQSTIDKDGWL 432 (560)
T ss_pred cccCceeecCCCccccCCCCceeeeCCCcEEEEEeCCCCc--CCCCCCCeEEEEECcchhhhhcCChhHhhhhccCCCCc
Confidence 9998765432222 22345899999999999999933444 44456999999999999999999999999988 79999
Q ss_pred eec-cEEEecC
Q 010568 498 HTG-MGVWEQL 507 (507)
Q Consensus 498 ~TG-lg~~d~d 507 (507)
+|| +|++|+|
T Consensus 433 ~TGDlg~~~~~ 443 (560)
T PLN02574 433 RTGDIAYFDED 443 (560)
T ss_pred ccceEEEEECC
Confidence 999 9999975
|
|
| >PRK09274 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-50 Score=424.50 Aligned_cols=390 Identities=18% Similarity=0.214 Sum_probs=301.1
Q ss_pred CCHHHHHHHHHHhCCCCCceeeEeeccCcC----CceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHH
Q 010568 44 ESCWDVFRMAVERNPNNRMLGQREIVDGKA----GKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIG 119 (507)
Q Consensus 44 ~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~----~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~ 119 (507)
.|+.++|.+.++++||++|+++. ++.. ..++.+||+||.++++++|++|.+.|+++||+|+++++|+++++++
T Consensus 6 ~~~~~~l~~~a~~~p~~~a~~~~---~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~g~~~gd~V~~~~~n~~~~~~~ 82 (552)
T PRK09274 6 ANIARHLPRAAQERPDQLAVAVP---GGRGADGKLAYDELSFAELDARSDAIAHGLNAAGIGRGMRAVLMVTPSLEFFAL 82 (552)
T ss_pred hhHHHHHHHHHHhCCCcceEEec---cCCCCccccccCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCcHHHHHH
Confidence 57889999999999999999875 3321 1234799999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCC-h-hHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCc
Q 010568 120 MEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKK-I-PEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGL 197 (507)
Q Consensus 120 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~-~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 197 (507)
+|||+++|++++|++|.++.+++.++++.++++++|++... . ..+.... ......++.++.... .
T Consensus 83 ~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~----------~ 149 (552)
T PRK09274 83 TFALFKAGAVPVLVDPGMGIKNLKQCLAEAQPDAFIGIPKAHLARRLFGWG---KPSVRRLVTVGGRLL----------W 149 (552)
T ss_pred HHHHHHcCeEEEEcCCCccHHHHHHHHHhcCCCEEEeccHHHHHHHHhccC---ccchhheeccccccc----------c
Confidence 99999999999999999999999999999999999987521 1 1111111 122223333322100 0
Q ss_pred eEeeHHHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecCh
Q 010568 198 AVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPL 277 (507)
Q Consensus 198 ~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl 277 (507)
....++++...............++++++++|||||||.||+|.++|.++...+......+ ++..+++.++.+|+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~pl 224 (552)
T PRK09274 150 GGTTLATLLRDGAAAPFPMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDY-----GIEPGEIDLPTFPL 224 (552)
T ss_pred CCccHHHhcccCccccCCCCCCCCCCeEEEEECCCCCCCCceEEecHHHHHHHHHHHHHHh-----CCCCCceeeeccCH
Confidence 1123455442221112222344678999999999999999999999999999888755444 67889999999999
Q ss_pred HHHHHHHHHHHHHHcCCEEEEec--------CCHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHH
Q 010568 278 AHIFDRAIEEVFISNGAAIGFWR--------GDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNI 349 (507)
Q Consensus 278 ~h~~g~~~~~~~l~~G~~v~l~~--------~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~ 349 (507)
+|.+++ ..|+++++.+ .++..+++.|+++++|+++++|++++.+++.......
T Consensus 225 ~~~~~~-------~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~------------ 285 (552)
T PRK09274 225 FALFGP-------ALGMTSVIPDMDPTRPATVDPAKLFAAIERYGVTNLFGSPALLERLGRYGEANGI------------ 285 (552)
T ss_pred HHhhhh-------hhCCeEEecCcccccccccCHHHHHHHHHHcCCeEEeccHHHHHHHHHHhhhcCC------------
Confidence 876543 4577777653 2789999999999999999999999998764321110
Q ss_pred HHHhHHhhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhh--CCcEEeecccccCcccee
Q 010568 350 AYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA--CAHVLQGYGLTETCAGTF 427 (507)
Q Consensus 350 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~--~~~v~~~YG~tE~~~~~~ 427 (507)
..+++|.+++||+++++++.+.+++.+ ++++++.||+||++++++
T Consensus 286 ---------------------------------~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~ 332 (552)
T PRK09274 286 ---------------------------------KLPSLRRVISAGAPVPIAVIERFRAMLPPDAEILTPYGATEALPISS 332 (552)
T ss_pred ---------------------------------CCchhhEEEecCCcCCHHHHHHHHHHcCCCceEEccccccccceeEe
Confidence 013789999999999999999999988 469999999999987665
Q ss_pred ccCCC---------CCccCCcccccccCceEEEeecCCC-------ccccCCCCCCceEEEecCCccccccCChhhhhhh
Q 010568 428 VSLPN---------EMSMIGTVGPPVPNVDVCLESVPEM-------EYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEV 491 (507)
Q Consensus 428 ~~~~~---------~~~~~~s~G~p~pg~~i~ivd~~~~-------~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~ 491 (507)
..... ......++|+|+||++++|+| +++ +..+++.|+.|||+|+|+.++.|||++++.+...
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~ivd-~~~~~~~~~~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~t~~~ 411 (552)
T PRK09274 333 IESREILFATRAATDNGAGICVGRPVDGVEVRIIA-ISDAPIPEWDDALRLATGEIGEIVVAGPMVTRSYYNRPEATRLA 411 (552)
T ss_pred ecchhhhccccccccCCCCcccCccCCCceEEEEe-ccccccccccccccCCCCCeeEEEEecCcccccccCChHHhhhh
Confidence 44322 111224799999999999998 432 1234556799999999999999999999999887
Q ss_pred c---ccC--ceeec-cEEEecC
Q 010568 492 M---VDG--WFHTG-MGVWEQL 507 (507)
Q Consensus 492 ~---~dg--w~~TG-lg~~d~d 507 (507)
| .+| ||+|| +|++|+|
T Consensus 412 ~~~~~~g~~w~~TGDlg~~d~d 433 (552)
T PRK09274 412 KIPDGQGDVWHRMGDLGYLDAQ 433 (552)
T ss_pred hcccCCCCcEEEcCCEEEEccC
Confidence 6 356 99999 9999975
|
|
| >PRK07656 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-50 Score=418.71 Aligned_cols=397 Identities=23% Similarity=0.332 Sum_probs=327.5
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHH
Q 010568 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120 (507)
Q Consensus 41 ~~~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~ 120 (507)
.++.++.+.|++.++.+||++|+++. + +++||+||.+++.++|+.|.+.|+++||+|+++++|++++++++
T Consensus 2 ~~~~~i~~~l~~~~~~~~~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~ 72 (513)
T PRK07656 2 NEWMTLPELLARAARRFGDKEAYVFG---D------QRLTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAA 72 (513)
T ss_pred CccccHHHHHHHHHHHCCCCeEEEeC---C------CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHH
Confidence 45688999999999999999999874 3 46999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCceEe
Q 010568 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVY 200 (507)
Q Consensus 121 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 200 (507)
+||+++|++++|+++..+.+++..+++.++++++|++............ ..+..+.++......... ......
T Consensus 73 la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------~~~~~~ 145 (513)
T PRK07656 73 LGALKAGAVVVPLNTRYTADEAAYILARGDAKALFVLGLFLGVDYSATT-RLPALEHVVICETEEDDP------HTEKMK 145 (513)
T ss_pred HHHHhcCeEEEecCcccCHHHHHHHHhhcCceEEEEchhhHHHHHHHHh-ccCCccEEEEEcCccccc------Cccccc
Confidence 9999999999999999999999999999999999999876655444332 224445555444321110 001234
Q ss_pred eHHHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHH
Q 010568 201 SWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHI 280 (507)
Q Consensus 201 ~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~ 280 (507)
+|+++...... ........++++++++|||||||.||+|.++|.++...+..+...+ .+..++++++.+|++|.
T Consensus 146 ~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 219 (513)
T PRK07656 146 TFTDFLAAGDP-AERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYL-----GLTEGDRYLAANPFFHV 219 (513)
T ss_pred cHHHHHhcCCC-CCCcCCCCCCceEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhh-----CCCCCCeEEEccchHHH
Confidence 67777654322 1223445778999999999999999999999999998887754444 78889999999999999
Q ss_pred HHHHH-HHHHHHcCCEEEEecC-CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhHHhhh
Q 010568 281 FDRAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNL 358 (507)
Q Consensus 281 ~g~~~-~~~~l~~G~~v~l~~~-~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 358 (507)
+++.. ++.++..|+++++.+. ++..+++.++++++|++.++|.++..+++......
T Consensus 220 ~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~---------------------- 277 (513)
T PRK07656 220 FGYKAGVNAPLMRGATILPLPVFDPDEVFRLIETERITVLPGPPTMYNSLLQHPDRSA---------------------- 277 (513)
T ss_pred HHHHHHHHHHHHcCceEEecCcCCHHHHHHHHHHhCCeEEechHHHHHHHHcCCCcCC----------------------
Confidence 99876 7788999999988765 89999999999999999999999999865321100
Q ss_pred hcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhCC-cEEeecccccCccceeccCCCCCcc-
Q 010568 359 KKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACA-HVLQGYGLTETCAGTFVSLPNEMSM- 436 (507)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~~-~v~~~YG~tE~~~~~~~~~~~~~~~- 436 (507)
.++ +++|.+++||+++++++.+.+++.++. .+++.||+||+++++..+..+....
T Consensus 278 ---------------~~~--------~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~ 334 (513)
T PRK07656 278 ---------------EDL--------SSLRLAVTGAASMPVALLERFESELGVDIVLTGYGLSEASGVTTFNRLDDDRKT 334 (513)
T ss_pred ---------------CCc--------cceeeEEecCCCCCHHHHHHHHHHcCCCceEeEEccccCCCceeecCccccccc
Confidence 001 379999999999999999999998988 8999999999988877766544322
Q ss_pred -CCcccccccCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhcc-cCceeec-cEEEecC
Q 010568 437 -IGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV-DGWFHTG-MGVWEQL 507 (507)
Q Consensus 437 -~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~-dgw~~TG-lg~~d~d 507 (507)
++++|.|++|++++|+| +++..++ .|+.|||+++|+.++.||+++++.+...+. +|||+|| +|++|+|
T Consensus 335 ~~~~vG~~~~~~~~~i~d-~~~~~~~--~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~tGDl~~~~~~ 405 (513)
T PRK07656 335 VAGTIGTAIAGVENKIVN-ELGEEVP--VGEVGELLVRGPNVMKGYYDDPEATAAAIDADGWLHTGDLGRLDEE 405 (513)
T ss_pred cCCCccccCCCcEEEEEC-CCCCCCC--CCCceEEEEEcchhhhhhcCCHHHHhhhhccCCceeccceEEEcCC
Confidence 58999999999999999 7776554 458999999999999999999999988884 9999999 9999865
|
|
| >PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-50 Score=415.69 Aligned_cols=370 Identities=24% Similarity=0.348 Sum_probs=307.9
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHHHH
Q 010568 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (507)
Q Consensus 43 ~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (507)
+.|+++.|++++.++||++|+++. + +.+||.||.++++++|++|.+.|+++||+|+++++|++++++++||
T Consensus 1 ~~~~~~~l~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~~~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la 71 (483)
T PRK03640 1 METMPNWLKQRAFLTPDRTAIEFE---E------KKVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHA 71 (483)
T ss_pred CCcHHHHHHHHHHhCCCceEEEeC---C------eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence 578999999999999999999864 3 5799999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCceEeeH
Q 010568 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSW 202 (507)
Q Consensus 123 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 202 (507)
|+++|++++|+++..+.+++..+++.++++.+|++........... ...+
T Consensus 72 ~~~~G~~~v~i~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~------------------------------~~~~ 121 (483)
T PRK03640 72 LQQLGAVAVLLNTRLSREELLWQLDDAEVKCLITDDDFEAKLIPGI------------------------------SVKF 121 (483)
T ss_pred HHhCCcEEEecCcCCCHHHHHHHHHhCCCCEEEEcchhhHHHhhhc------------------------------cccH
Confidence 9999999999999999999999999999999999876443321110 0113
Q ss_pred HHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHH
Q 010568 203 DEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282 (507)
Q Consensus 203 ~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g 282 (507)
+++................+++++++|||||||.||+|.++|.++...+..... ..++..+|++++.+|++|.++
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~-----~~~~~~~d~~l~~~p~~~~~g 196 (483)
T PRK03640 122 AELMNGPKEEAEIQEEFDLDEVATIMYTSGTTGKPKGVIQTYGNHWWSAVGSAL-----NLGLTEDDCWLAAVPIFHISG 196 (483)
T ss_pred HHHhhcccccCCCCCCCCCCCeEEEEeCCCcCCCCcEEEEecHHHHHHHHHHHH-----hcCCCcCcEEEEecCHHHHHH
Confidence 333332211112222346789999999999999999999999998887666333 337889999999999999999
Q ss_pred HHHHHHHHHcCCEEEEecC-CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhHHhhhhcC
Q 010568 283 RAIEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKG 361 (507)
Q Consensus 283 ~~~~~~~l~~G~~v~l~~~-~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 361 (507)
+..++.++..|+++++.+. ++..+++.++++++|++.++|++++.++..+...
T Consensus 197 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~-------------------------- 250 (483)
T PRK03640 197 LSILMRSVIYGMRVVLVEKFDAEKINKLLQTGGVTIISVVSTMLQRLLERLGEG-------------------------- 250 (483)
T ss_pred HHHHHHHHhcCCEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCcc--------------------------
Confidence 9888888999999999877 9999999999999999999999999986422110
Q ss_pred CCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhCCcEEeecccccCccceeccCCC-CCccCCcc
Q 010568 362 HKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPN-EMSMIGTV 440 (507)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~-~~~~~~s~ 440 (507)
....++|.+++||+++++++.+.+++. ++++++.||+||++..+...... ....++++
T Consensus 251 --------------------~~~~~lr~~~~~g~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~v 309 (483)
T PRK03640 251 --------------------TYPSSFRCMLLGGGPAPKPLLEQCKEK-GIPVYQSYGMTETASQIVTLSPEDALTKLGSA 309 (483)
T ss_pred --------------------ccCCcceEEEEcCCCCCHHHHHHHHHh-CCCeeeeeccCcccccccccCcccccccCCCc
Confidence 001379999999999999999988874 89999999999987644333322 33445899
Q ss_pred cccccCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhcccCceeec-cEEEecC
Q 010568 441 GPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG-MGVWEQL 507 (507)
Q Consensus 441 G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~dgw~~TG-lg~~d~d 507 (507)
|+|+++++++|.| + +. +++.|+.|||+++|+.++.||+++++.+...|.+|||+|| ++++|+|
T Consensus 310 G~p~~~~~~~i~~-~-~~--~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~tGDl~~~~~~ 373 (483)
T PRK03640 310 GKPLFPCELKIEK-D-GV--VVPPFEEGEIVVKGPNVTKGYLNREDATRETFQDGWFKTGDIGYLDEE 373 (483)
T ss_pred ccccCCcEEEEec-C-CC--cCCCCCceEEEEECcchhhhhcCCHHHHHHHHhcCCeeccceEEEcCC
Confidence 9999999999988 4 33 4556689999999999999999999999999999999999 9999876
|
|
| >PRK13382 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-50 Score=419.53 Aligned_cols=385 Identities=18% Similarity=0.215 Sum_probs=309.6
Q ss_pred CCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHHHHH
Q 010568 44 ESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEAC 123 (507)
Q Consensus 44 ~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~ 123 (507)
.++.++|.++++++||++|+++. + +.+||.||.++++++|++|.++|+++|++|+++++|++++++++|||
T Consensus 43 ~~~~~~l~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~~~~~A~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~ 113 (537)
T PRK13382 43 MGPTSGFAIAAQRCPDRPGLIDE---L------GTLTWRELDERSDALAAALQALPIGEPRVVGIMCRNHRGFVEALLAA 113 (537)
T ss_pred CCHHHHHHHHHHhCCCCeEEEeC---C------CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCcHHHHHHHHHH
Confidence 57999999999999999999854 3 36999999999999999999999999999999999999999999999
Q ss_pred HhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCceEeeHH
Q 010568 124 NALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWD 203 (507)
Q Consensus 124 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (507)
+++|++++|+++.++.+++.++++.++++++|++.+....+....... +....++.+++... ...++
T Consensus 114 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~------------~~~~~ 180 (537)
T PRK13382 114 NRIGADILLLNTSFAGPALAEVVTREGVDTVIYDEEFSATVDRALADC-PQATRIVAWTDEDH------------DLTVE 180 (537)
T ss_pred HHcCcEEEecCcccCHHHHHHHHHhcCCCEEEEchhhHHHHHHHHhhc-cccceEEEecCCcc------------cccHH
Confidence 999999999999999999999999999999999977655444332211 22333343332110 12344
Q ss_pred HHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHH
Q 010568 204 EFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDR 283 (507)
Q Consensus 204 ~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~ 283 (507)
++....... .+...+++.++++|||||||.||+|.++|.++......+...+ .+..+++++...|++|.+++
T Consensus 181 ~~~~~~~~~---~~~~~~~~~~~il~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~~~~g~ 252 (537)
T PRK13382 181 VLIAAHAGQ---RPEPTGRKGRVILLTSGTTGTPKGARRSGPGGIGTLKAILDRT-----PWRAEEPTVIVAPMFHAWGF 252 (537)
T ss_pred HHhhccCcC---CCCCCCCCCeEEEECCCCCCCCCEEEeccchHHHHHHHHHHhh-----CCCCCCeEEEecChHhhhHH
Confidence 444332111 1123467899999999999999999999998887777644433 56788999999999999999
Q ss_pred HHHHHHHHcCCEEEEecC-CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhHHhhhhcCC
Q 010568 284 AIEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGH 362 (507)
Q Consensus 284 ~~~~~~l~~G~~v~l~~~-~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 362 (507)
..++.++..|+++++.+. ++..+++.|+++++|++.++|++++.+++.....
T Consensus 253 ~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~--------------------------- 305 (537)
T PRK13382 253 SQLVLAASLACTIVTRRRFDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAEV--------------------------- 305 (537)
T ss_pred HHHHHHHhcCcEEEECCCcCHHHHHHHHHHhCCEEEEehHHHHHHHHcCCchh---------------------------
Confidence 878888999999988765 9999999999999999999999999886521110
Q ss_pred CCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhCCcEEeecccccCccceeccCCCCCccCCcccc
Q 010568 363 KHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGP 442 (507)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~s~G~ 442 (507)
.+..++ .++|.+++||+++++++.+.|.+.++..+++.||+||++.++..+.......++++|+
T Consensus 306 --------~~~~~~--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~vG~ 369 (537)
T PRK13382 306 --------RNRYSG--------RSLRFAAASGSRMRPDVVIAFMDQFGDVIYNNYNATEAGMIATATPADLRAAPDTAGR 369 (537)
T ss_pred --------cccCCc--------cceeEEEEcCCCCCHHHHHHHHHHcCCcEEecccccccCcceecChhHhccCCCCccc
Confidence 000001 2799999999999999999999989989999999999988766554333334589999
Q ss_pred cccCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhcccCceeec-cEEEecC
Q 010568 443 PVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG-MGVWEQL 507 (507)
Q Consensus 443 p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~dgw~~TG-lg~~d~d 507 (507)
|++|++++|+| ++++.++ .|+.|||+++|++++.||+ ++.+. .+.+|||+|| ++++|+|
T Consensus 370 p~~~~~~~i~d-~~~~~~~--~g~~GEl~v~g~~~~~gY~--~~~~~-~~~~g~~~TGDl~~~~~~ 429 (537)
T PRK13382 370 PAEGTEIRILD-QDFREVP--TGEVGTIFVRNDTQFDGYT--SGSTK-DFHDGFMASGDVGYLDEN 429 (537)
T ss_pred cCcCcEEEEEC-CCCCCCC--CCCeeEEEEEcCCcccCcc--ccchh-hccCCCEeeCceEEEeCC
Confidence 99999999999 7776554 4589999999999999998 44443 4568999999 9999975
|
|
| >PLN02246 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-49 Score=416.90 Aligned_cols=412 Identities=25% Similarity=0.324 Sum_probs=324.4
Q ss_pred CCCceeecCccCCCCCCCCCCCCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCC
Q 010568 22 SIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVE 101 (507)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~ 101 (507)
+.+-+||+..... ..+...|+.+++.++++++||++|+++. +.. +++||.||.++++++|+.|.+.|++
T Consensus 5 ~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~a~~~~---~~~----~~~ty~el~~~~~~la~~L~~~g~~ 73 (537)
T PLN02246 5 SEEFIFRSKLPDI----YIPNHLPLHDYCFERLSEFSDRPCLIDG---ATG----RVYTYADVELLSRRVAAGLHKLGIR 73 (537)
T ss_pred cceeEecCCCCCC----CCCCCCcHHHHHHHHHHhCCCCeEEEec---CCC----ceeeHHHHHHHHHHHHHHHHHhCCC
Confidence 4556777775443 2244578999999999999999999864 322 5799999999999999999999999
Q ss_pred CCCEEEEEeCCchhhHHHHHHHHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEe
Q 010568 102 ERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSF 181 (507)
Q Consensus 102 ~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~ 181 (507)
+||+|+++++|+++++++++||+++|++++|++|..+.+++..+++.++++++|++......+...... ..+ .++.+
T Consensus 74 ~gd~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~--~~~-~~i~~ 150 (537)
T PLN02246 74 QGDVVMLLLPNCPEFVLAFLGASRRGAVTTTANPFYTPAEIAKQAKASGAKLIITQSCYVDKLKGLAED--DGV-TVVTI 150 (537)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCEEEecCCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHHhhc--CCc-eEEEe
Confidence 999999999999999999999999999999999999999999999999999999988766655443221 122 34444
Q ss_pred cCCChhhHHHHhhcCceEeeHHHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhc
Q 010568 182 SKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESV 261 (507)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~ 261 (507)
+.... ....+.++..... ...+.....++++++++|||||||.||+|.++|++++..+...... ...
T Consensus 151 ~~~~~-----------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~-~~~ 217 (537)
T PLN02246 151 DDPPE-----------GCLHFSELTQADE-NELPEVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDG-ENP 217 (537)
T ss_pred CCCCC-----------CceeHHHHhcCCC-CCCCCCCCCccCEEEEEeCCCCCCCCceEEEeHHHHHHHHHHHhhc-ccc
Confidence 43211 1234555543321 1222233467899999999999999999999999998876653221 112
Q ss_pred cccCCCCcEEEEecChHHHHHHHH-HHHHHHcCCEEEEecC-CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhcc
Q 010568 262 NEKLTSEDVYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSG 339 (507)
Q Consensus 262 ~~~~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~v~l~~~-~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~ 339 (507)
...+..+|++++.+|++|.+++.. ++.++..|+++++.+. ++..+++.++++++|++.++|+++..+++....
T Consensus 218 ~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~----- 292 (537)
T PLN02246 218 NLYFHSDDVILCVLPMFHIYSLNSVLLCGLRVGAAILIMPKFEIGALLELIQRHKVTIAPFVPPIVLAIAKSPVV----- 292 (537)
T ss_pred ccCCCCCcEEEEeechHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHhCceEEEcchHHHHHHhcCccc-----
Confidence 346789999999999999999865 6677999999999876 899999999999999999999999887542100
Q ss_pred chhHHHHHHHHHHhHHhhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhh-CCcEEeecc
Q 010568 340 GLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYG 418 (507)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~-~~~v~~~YG 418 (507)
...++ +++|.+++||+++++++.+.+++.+ +..+++.||
T Consensus 293 --------------------------------~~~~~--------~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~YG 332 (537)
T PLN02246 293 --------------------------------EKYDL--------SSIRMVLSGAAPLGKELEDAFRAKLPNAVLGQGYG 332 (537)
T ss_pred --------------------------------cccCc--------cceeEEEEecCcCCHHHHHHHHHHcCCCeEecccc
Confidence 00001 3799999999999999999999987 678999999
Q ss_pred cccCccceeccCC----CCCccCCcccccccCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhc-c
Q 010568 419 LTETCAGTFVSLP----NEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-V 493 (507)
Q Consensus 419 ~tE~~~~~~~~~~----~~~~~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~-~ 493 (507)
+||++.+++.... .....++++|+|+++++++|+|.+++. +++.|+.|||+++|+.++.||+++++.+...| .
T Consensus 333 ~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~--~~~~g~~Gel~v~g~~~~~GY~~~~~~~~~~~~~ 410 (537)
T PLN02246 333 MTEAGPVLAMCLAFAKEPFPVKSGSCGTVVRNAELKIVDPETGA--SLPRNQPGEICIRGPQIMKGYLNDPEATANTIDK 410 (537)
T ss_pred ccccCcccccccccCCCCccccCCccccccCCcEEEEecCCCCC--cCCCCCceEEEEECCchhccccCCchhhhhcccC
Confidence 9999876544321 112234789999999999999822344 34456999999999999999999999999998 6
Q ss_pred cCceeec-cEEEecC
Q 010568 494 DGWFHTG-MGVWEQL 507 (507)
Q Consensus 494 dgw~~TG-lg~~d~d 507 (507)
+|||+|| +|++|+|
T Consensus 411 ~~~~~TGD~~~~~~~ 425 (537)
T PLN02246 411 DGWLHTGDIGYIDDD 425 (537)
T ss_pred CCCeeecceEEEeCC
Confidence 8999999 9999975
|
|
| >TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-50 Score=418.41 Aligned_cols=394 Identities=22% Similarity=0.253 Sum_probs=313.7
Q ss_pred CCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHHHHH
Q 010568 44 ESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEAC 123 (507)
Q Consensus 44 ~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~ 123 (507)
.|+.++|++.++.+|+++|++.. +...+..+.+||.||.++++++|++|++.|+++|++|+++++|+++++++++||
T Consensus 22 ~~~~~~~~~~~~~~p~~~a~~~~---~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~ 98 (538)
T TIGR03208 22 RTINDHFDAAVANCPDKPALTAY---RDGHGAVRRFSYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLAC 98 (538)
T ss_pred CcHHHHHHHHHHHCCCceEEEee---cccCCCcceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHH
Confidence 58999999999999999999864 333333468999999999999999999999999999999999999999999999
Q ss_pred HhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChh----HHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCceE
Q 010568 124 NALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIP----EMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAV 199 (507)
Q Consensus 124 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 199 (507)
+++|++++|++|..+.+++.++++.++++++|++..... ..........+..+.++..+... .
T Consensus 99 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~ 165 (538)
T TIGR03208 99 ARIGAVLNPLMPIFRERELSFMLNHADSKVFVVPSVFRGFDHAAMARELQSKLPALRQVVVIDGDG-------------D 165 (538)
T ss_pred HhcCEEEeccCcccCHHHHHHHHHhcCCeEEEEccccccccHHHHHHHHhccCCcceEEEEecCCC-------------C
Confidence 999999999999999999999999999999999876421 11111111224445565554321 1
Q ss_pred eeHHHHHhccccCC-------CCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEE
Q 010568 200 YSWDEFLQLGENKQ-------FDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYV 272 (507)
Q Consensus 200 ~~~~~l~~~~~~~~-------~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l 272 (507)
..+++++....... .......++++++++|||||||.||+|.++|.++...+...... ..+..+|+++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~-----~~~~~~d~~l 240 (538)
T TIGR03208 166 DSFDRVLMTPERDDTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAER-----LELGGGDVIL 240 (538)
T ss_pred cCHHHHhhccccccccccccccccCCCCCCCeEEEEECCCCCCCCcEEEeehHHHHHHHHHHHhh-----cCCCCCCeEE
Confidence 12333332111000 11123467899999999999999999999999999888774433 3678899999
Q ss_pred EecChHHHHHHHH-HHHHHHcCCEEEEecC-CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHH
Q 010568 273 SYLPLAHIFDRAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIA 350 (507)
Q Consensus 273 ~~~pl~h~~g~~~-~~~~l~~G~~v~l~~~-~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 350 (507)
+.+|++|..++.. ++.+++.|+++++.+. ++..+++.++++++|++.++|.++..++........
T Consensus 241 ~~~pl~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~~------------- 307 (538)
T TIGR03208 241 MASPMAHQTGFMYGLMMPLILNATAVLQDIWNPARAAELIRETGVTFTMASTPFLTDLCRAVKESGA------------- 307 (538)
T ss_pred EeCCchhHHHHHHHHHHHHHcCCEEEecCccCHHHHHHHHHHhCCeEEecCHHHHHHHHhchhccCC-------------
Confidence 9999999988765 7788999999988776 999999999999999999999999887653221100
Q ss_pred HHhHHhhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhCCcEEeecccccCccceeccC
Q 010568 351 YSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSL 430 (507)
Q Consensus 351 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~~~v~~~YG~tE~~~~~~~~~ 430 (507)
..+++|.+++||+++++++.+++.+.+++++++.||+||++++.+...
T Consensus 308 --------------------------------~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~ 355 (538)
T TIGR03208 308 --------------------------------PVPSLFTFLCAGAPIPGILVERAWELLGALIVSAWGMTENGAVTVTEP 355 (538)
T ss_pred --------------------------------CCCcceEEEEcCCCCCHHHHHHHHHHcCCeEEeeeccCcCCCccccCc
Confidence 013789999999999999999999888999999999999987766554
Q ss_pred CCCC-ccCCcccccccCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhcccCceeec-cEEEecC
Q 010568 431 PNEM-SMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG-MGVWEQL 507 (507)
Q Consensus 431 ~~~~-~~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~dgw~~TG-lg~~d~d 507 (507)
.... ....++|+|+||++++|+| +++..+ +.|+.|||+++|+.++.||+++++.+.. ..+|||+|| +|++|+|
T Consensus 356 ~~~~~~~~~~~G~~~~g~~v~i~~-~~~~~~--~~g~~Gel~v~g~~~~~gy~~~~~~~~~-~~~~~~~TGD~~~~~~~ 430 (538)
T TIGR03208 356 DDALEKASTTDGRPLPGVEVKVID-ANGAKL--SQGETGRLLVRGCSNFGGYLKRPHLNST-DAEGWFDTGDLAFQDAE 430 (538)
T ss_pred ccchhhccCcccccCCCCEEEEEC-CCCCCC--cCCCCcEEEEecCcccccccCCcccccc-cCCCceeccceEEECCC
Confidence 3321 2236899999999999999 777654 4568999999999999999999987642 268999999 9999875
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. |
| >PRK05605 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-50 Score=421.93 Aligned_cols=405 Identities=26% Similarity=0.391 Sum_probs=318.2
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHHHH
Q 010568 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (507)
Q Consensus 43 ~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (507)
..|+.++|+++++++||++|+++. + +.+||.||.++++++|+.|.+.|+++||+|+++++|+++++++++|
T Consensus 31 ~~~l~~~~~~~~~~~p~~~a~~~~---~------~~~Ty~ql~~~~~~~A~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA 101 (573)
T PRK05605 31 DTTLVDLYDNAVARFGDRPALDFF---G------ATTTYAELGKQVRRAAAGLRALGVRPGDRVAIVLPNCPQHIVAFYA 101 (573)
T ss_pred cCCHHHHHHHHHHHCCCCeEEEeC---C------CcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHH
Confidence 458999999999999999999864 3 3599999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChh---hH----------
Q 010568 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPE---QR---------- 189 (507)
Q Consensus 123 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~---------- 189 (507)
|+++|++++|++|.++.+++.++++.++++++|+++............ ...+.++.++..... ..
T Consensus 102 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 179 (573)
T PRK05605 102 VLRLGAVVVEHNPLYTAHELEHPFEDHGARVAIVWDKVAPTVERLRRT--TPLETIVSVNMIAAMPLLQRLALRLPIPAL 179 (573)
T ss_pred HHhcCcEEeecCcCCCHHHHHHHHhccCCcEEEechhhHHHHHhhhhc--cccceeEeeecccccccccccccccccccc
Confidence 999999999999999999999999999999999987765544333221 122233333211000 00
Q ss_pred ----HHHhhcCceEeeHHHHHhccccC---CCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhcc
Q 010568 190 ----EEIEKYGLAVYSWDEFLQLGENK---QFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVN 262 (507)
Q Consensus 190 ----~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~ 262 (507)
+...........|+++....... .........+++++++|||||||.||+|.++|.++..++......+. .
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~--~ 257 (573)
T PRK05605 180 RKARAALTGPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWVP--G 257 (573)
T ss_pred cccccccccCCCcceeHHHHhhccccccccccCCCCCCCCCEEEEEcCCCCCCCCcEEEEecHHHHHHHHHHHhhcc--c
Confidence 00000011234566665442211 01223346789999999999999999999999999887765332221 0
Q ss_pred ccCCCCcEEEEecChHHHHHHHH-HHHHHHcCCEEEEecC-CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccc
Q 010568 263 EKLTSEDVYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGG 340 (507)
Q Consensus 263 ~~~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~v~l~~~-~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~ 340 (507)
.....+++++.+|++|.+|+.. +..++..|+++++.+. ++..+++.++++++|++.++|.+++.+++......
T Consensus 258 -~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~---- 332 (573)
T PRK05605 258 -LGDGPERVLAALPMFHAYGLTLCLTLAVSIGGELVLLPAPDIDLILDAMKKHPPTWLPGVPPLYEKIAEAAEERG---- 332 (573)
T ss_pred -cCCCCcEEEEecChHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCEEEEchHHHHHHHHhCccccC----
Confidence 1234789999999999999876 5667899999998876 99999999999999999999999999875321110
Q ss_pred hhHHHHHHHHHHhHHhhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhCCcEEeecccc
Q 010568 341 LLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLT 420 (507)
Q Consensus 341 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~~~v~~~YG~t 420 (507)
.++ +++|.+++||+++++++.+.+.+.++.++++.||+|
T Consensus 333 ---------------------------------~~~--------~~lr~i~~gg~~l~~~~~~~~~~~~~~~i~~~YG~T 371 (573)
T PRK05605 333 ---------------------------------VDL--------SGVRNAFSGAMALPVSTVELWEKLTGGLLVEGYGLT 371 (573)
T ss_pred ---------------------------------CCc--------hhccEEEECCCcCCHHHHHHHHHHhCCCeecccccc
Confidence 001 378999999999999999999988899999999999
Q ss_pred cCccceeccCCCCCccCCcccccccCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhcccCceeec
Q 010568 421 ETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG 500 (507)
Q Consensus 421 E~~~~~~~~~~~~~~~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~dgw~~TG 500 (507)
|+++++..........++++|+|+||+.++|+| +++...+++.|+.|||+++|+.++.||+++++.+++.|.+|||+||
T Consensus 372 E~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TG 450 (573)
T PRK05605 372 ETSPIIVGNPMSDDRRPGYVGVPFPDTEVRIVD-PEDPDETMPDGEEGELLVRGPQVFKGYWNRPEETAKSFLDGWFRTG 450 (573)
T ss_pred hhchhhhcCCcccCCcCCccccCCCCCEEEEEc-CCCCCccCCCCCeeEEEEecCchhhhhcCChhHhhhcccCCCcccC
Confidence 999877666544444458999999999999999 6653344556799999999999999999999999999988999999
Q ss_pred -cEEEecC
Q 010568 501 -MGVWEQL 507 (507)
Q Consensus 501 -lg~~d~d 507 (507)
+|++|+|
T Consensus 451 D~~~~~~~ 458 (573)
T PRK05605 451 DVVVMEED 458 (573)
T ss_pred CEEEEcCC
Confidence 9999875
|
|
| >PRK05677 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-49 Score=419.08 Aligned_cols=405 Identities=21% Similarity=0.337 Sum_probs=312.2
Q ss_pred CCCCCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHH-CCCCCCCEEEEEeCCchhhHH
Q 010568 40 IPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRT-CGVEERGKCGIYGVNCPEWII 118 (507)
Q Consensus 40 ~~~~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~-~gv~~gd~V~i~~~n~~~~~~ 118 (507)
...+.|+.++|++.++++|+++|++.. + +.+||.||.++++++|+.|.+ .|+++||+|+|+++|++++++
T Consensus 20 ~~~~~~~~~~l~~~a~~~p~~~al~~~----~-----~~~Ty~el~~~~~~la~~L~~~~gi~~gd~Vai~~~n~~~~~~ 90 (562)
T PRK05677 20 PDEYPNIQAVLKQSCQRFADKPAFSNL----G-----KTLTYGELYKLSGAFAAWLQQHTDLKPGDRIAVQLPNVLQYPV 90 (562)
T ss_pred CCccCcHHHHHHHHHHhCCCCeeEEEC----C-----ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHH
Confidence 344568999999999999999999853 2 469999999999999999997 699999999999999999999
Q ss_pred HHHHHHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCC--hhhHH-HH---
Q 010568 119 GMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVK--PEQRE-EI--- 192 (507)
Q Consensus 119 ~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~-~~--- 192 (507)
++|||+++|++++|++|..+.+++.++++.++++++|++......+.+.... ..++.++..+... +.... ..
T Consensus 91 ~~la~~~~Ga~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (562)
T PRK05677 91 AVFGAMRAGLIVVNTNPLYTAREMEHQFNDSGAKALVCLANMAHLAEKVLPK--TGVKHVIVTEVADMLPPLKRLLINAV 168 (562)
T ss_pred HHHHHHHcCeEEeecCCCCCHHHHHHHHhccCceEEEEecchhhhHHHhhhc--cCcceeEEecccccccchhhhhcccc
Confidence 9999999999999999999999999999999999999987655443333221 1233333322100 00000 00
Q ss_pred --------hhcC-ceEeeHHHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccc
Q 010568 193 --------EKYG-LAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNE 263 (507)
Q Consensus 193 --------~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~ 263 (507)
.... .....+.+.+..............++++++++|||||||.||+|+++|.++...+......+ ..
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~---~~ 245 (562)
T PRK05677 169 VKHVKKMVPAYHLPQAVKFNDALAKGAGQPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALM---GS 245 (562)
T ss_pred hhhccccccccCCcccccHHHHHhcCCCCCCCCCCCCccCEEEEEeCCCCCCCCcEEEEehhHHHHHHHHHHHHh---cc
Confidence 0000 01234455444332222222234678999999999999999999999999988766544332 11
Q ss_pred cCC-CCcEEEEecChHHHHHHHH-HHHHHHcCCEEEEecC--CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhcc
Q 010568 264 KLT-SEDVYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG--DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSG 339 (507)
Q Consensus 264 ~~~-~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~v~l~~~--~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~ 339 (507)
... ..+.+++.+|++|.+++.. ++..+..|+++++.+. ++..+++.|+++++|+++++|.++..++....
T Consensus 246 ~~~~~~~~~~~~~pl~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~------ 319 (562)
T PRK05677 246 NLNEGCEILIAPLPLYHIYAFTFHCMAMMLIGNHNILISNPRDLPAMVKELGKWKFSGFVGLNTLFVALCNNEA------ 319 (562)
T ss_pred CCCCCccEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHcCceEEecHHHHHHHHHhCcc------
Confidence 222 3478899999999999865 5667888888776653 88999999999999999999999988754110
Q ss_pred chhHHHHHHHHHHhHHhhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhCCcEEeeccc
Q 010568 340 GLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGL 419 (507)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~~~v~~~YG~ 419 (507)
....++ +++|.+++||+++++++.+.+.+.+++++++.||+
T Consensus 320 -------------------------------~~~~~~--------~~lr~v~~gG~~~~~~~~~~~~~~~~~~v~~~YG~ 360 (562)
T PRK05677 320 -------------------------------FRKLDF--------SALKLTLSGGMALQLATAERWKEVTGCAICEGYGM 360 (562)
T ss_pred -------------------------------cccCCh--------hhceEEEEcCccCCHHHHHHHHHHcCCCeeccCCc
Confidence 000011 27999999999999999999999889999999999
Q ss_pred ccCccceeccCCCCCccCCcccccccCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhc-ccCcee
Q 010568 420 TETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFH 498 (507)
Q Consensus 420 tE~~~~~~~~~~~~~~~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~-~dgw~~ 498 (507)
||++.++....... ..++++|+|+||++++|+| +++..++ .|+.|||+|+|+.++.||+++++.+++.| .+|||+
T Consensus 361 tE~~~~~~~~~~~~-~~~~~vG~~~~~~~v~i~d-~~~~~~~--~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~~~ 436 (562)
T PRK05677 361 TETSPVVSVNPSQA-IQVGTIGIPVPSTLCKVID-DDGNELP--LGEVGELCVKGPQVMKGYWQRPEATDEILDSDGWLK 436 (562)
T ss_pred cccCcceeecCccC-CCCCccCccCCCCEEEEEC-CCCCCCC--CCCCeEEEEecCccchhhcCCchhhhhccCCCCccc
Confidence 99987766554432 2347899999999999999 7776554 45899999999999999999999999999 689999
Q ss_pred ec-cEEEecC
Q 010568 499 TG-MGVWEQL 507 (507)
Q Consensus 499 TG-lg~~d~d 507 (507)
|| +|++|+|
T Consensus 437 TGDlg~~~~~ 446 (562)
T PRK05677 437 TGDIALIQED 446 (562)
T ss_pred ccceEEECCC
Confidence 99 9999975
|
|
| >PRK05857 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-50 Score=422.84 Aligned_cols=396 Identities=21% Similarity=0.225 Sum_probs=302.7
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHH
Q 010568 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120 (507)
Q Consensus 41 ~~~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~ 120 (507)
....|+.+.|.+.++++|+++|+++. ++. +.+||+||.++++++|+.|++.|+++||+|+++++|++++++++
T Consensus 11 ~~~~~~~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~e~~~~~ 83 (540)
T PRK05857 11 QLPSTVLDRVFEQARQQPEAIALRRC---DGT----SALRYRELVAEVGGLAADLRAQSVSRGSRVLVISDNGPETYLSV 83 (540)
T ss_pred cCCcchHHHHHHHHhhCCCcEEEeec---CCC----ceeeHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcCCCHHHHHHH
Confidence 44568999999999999999999865 443 56999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCceEe
Q 010568 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVY 200 (507)
Q Consensus 121 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 200 (507)
|||+++|++++|+++.++.+++.++++.++++.+|+++......... ......+. ++.++..... . .
T Consensus 84 lA~~~~G~v~v~l~~~~~~~~l~~~~~~~~~~~ii~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~----------~-~ 150 (540)
T PRK05857 84 LACAKLGAIAVMADGNLPIAAIERFCQITDPAAALVAPGSKMASSAV-PEALHSIP-VIAVDIAAVT----------R-E 150 (540)
T ss_pred HHHHHcCeEEEecCccCCHHHHHHHHHhcCCceEEEeccchhccccc-cccccccc-eeEeeccccc----------c-c
Confidence 99999999999999999999999999999999999987643211111 11111221 2222211100 0 0
Q ss_pred eHHHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHH
Q 010568 201 SWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHI 280 (507)
Q Consensus 201 ~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~ 280 (507)
+.+..... .....+....+++++++|||||||.||+|.++|.++.++....... .........+++.++.+|++|.
T Consensus 151 -~~~~~~~~--~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~h~ 226 (540)
T PRK05857 151 -SEHSLDAA--SLAGNADQGSEDPLAMIFTSGTTGEPKAVLLANRTFFAVPDILQKE-GLNWVTWVVGETTYSPLPATHI 226 (540)
T ss_pred -cccccccc--ccccccCCCCCCeEEEEeCCCCCCCCCeEEEechhhhhhhHHhhhc-cccccccccCceeeecCCcccc
Confidence 00000000 0111233467899999999999999999999999998765432210 0112245567899999999999
Q ss_pred HHHHHHHHHHHcCCEEEEecCCHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhHHhhhhc
Q 010568 281 FDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKK 360 (507)
Q Consensus 281 ~g~~~~~~~l~~G~~v~l~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 360 (507)
.++...+.+++.|+++++.+.++..+++.|+++++|+++++|++++.++.......
T Consensus 227 ~~l~~~~~~l~~G~~~v~~~~~~~~~~~~i~~~~it~~~~~P~~~~~l~~~~~~~~------------------------ 282 (540)
T PRK05857 227 GGLWWILTCLMHGGLCVTGGENTTSLLEILTTNAVATTCLVPTLLSKLVSELKSAN------------------------ 282 (540)
T ss_pred chHHHHHHHhhcceeEEecCCChhHHHHHHHhcCcceEEeChHHHHHHHhccccCC------------------------
Confidence 99888888899999987766689999999999999999999999998865321110
Q ss_pred CCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhCCcEEeecccccCccceeccCCCC----Ccc
Q 010568 361 GHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNE----MSM 436 (507)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~----~~~ 436 (507)
. ..+++|.+++||++++....++ .+.+++++++.||+||++.......... ...
T Consensus 283 -------------~--------~~~~lr~~~~gG~~~~~~~~~~-~~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~ 340 (540)
T PRK05857 283 -------------A--------TVPSLRLVGYGGSRAIAADVRF-IEATGVRTAQVYGLSETGCTALCLPTDDGSIVKIE 340 (540)
T ss_pred -------------C--------cCccceEEEEcCccCCchhHHH-HHHhCCeeecccCCCcCCceeeecccccccccccc
Confidence 0 0137999999999998877754 4467999999999999986544332221 113
Q ss_pred CCcccccccCceEEEeecCCCcccc----CCCCCCceEEEecCCccccccCChhhhhhhcccCceeec-cEEEecC
Q 010568 437 IGTVGPPVPNVDVCLESVPEMEYDA----LSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG-MGVWEQL 507 (507)
Q Consensus 437 ~~s~G~p~pg~~i~ivd~~~~~~~~----~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~dgw~~TG-lg~~d~d 507 (507)
++++|+|++|++++|+| +++.... .+.|+.|||+|+|++++.||+++++.+.+.|.||||+|| +|++|+|
T Consensus 341 ~~~~G~~~~g~~v~i~d-~~~~~~~~~~~~~~~~~Gel~v~g~~~~~GY~~~~~~t~~~~~~g~~~TGDlg~~d~~ 415 (540)
T PRK05857 341 AGAVGRPYPGVDVYLAA-TDGIGPTAPGAGPSASFGTLWIKSPANMLGYWNNPERTAEVLIDGWVNTGDLLERRED 415 (540)
T ss_pred cCCcCcccCCcEEEEEC-ccccCccccccCCCCCcceEEEeCcchhhhhhCCccchhhhcCCCceeccceEEEcCC
Confidence 47899999999999999 6655321 134689999999999999999999999999999999999 9999876
|
|
| >PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-50 Score=416.30 Aligned_cols=399 Identities=20% Similarity=0.280 Sum_probs=318.2
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHHHH
Q 010568 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (507)
Q Consensus 43 ~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (507)
.+|+.++|++.++++||++|+++. + ..+.++.+||.||.++++++|+.|.++|+++||+|+++++|+.+++++++|
T Consensus 6 ~~~l~~~~~~~a~~~p~~~a~~~~---~-~~~~~~~~ty~~l~~~v~~la~~L~~~g~~~~~~v~i~~~n~~~~~~~~la 81 (517)
T PRK08008 6 GQHLRQMWDDLADVYGHKTALIFE---S-SGGVVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFG 81 (517)
T ss_pred cccHHHHHHHHHHHCCCceEEEcc---c-CCCccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 368999999999999999999875 4 334457899999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCceEeeH
Q 010568 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSW 202 (507)
Q Consensus 123 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 202 (507)
|+++|+++++++|..+.+++.++++.++++.+|++.+....+.+........++.++..+..... ......+
T Consensus 82 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~ 153 (517)
T PRK08008 82 LAKIGAIMVPINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQEDATPLRHICLTRVALPA--------DDGVSSF 153 (517)
T ss_pred HHHcCeEEEEcCcccCHHHHHHHHHhcCceEEEEecchhHHHHHHHhhccccCcEEEEecCCCcc--------cccccCH
Confidence 99999999999999999999999999999999999887666555443333445555555432110 0123345
Q ss_pred HHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHH
Q 010568 203 DEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282 (507)
Q Consensus 203 ~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g 282 (507)
+++...............++++++++|||||||.||+|.++|.++...... ......+..++++++.+|++|..+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~-----~~~~~~~~~~~~~~~~~p~~~~~~ 228 (517)
T PRK08008 154 TQLKAQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYY-----SAWQCALRDDDVYLTVMPAFHIDC 228 (517)
T ss_pred HHHhccCCccccccCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHH-----HhhhcCCCCCCeEEEecCcHHHHH
Confidence 554433322111223446689999999999999999999999999865433 222235678999999999999877
Q ss_pred HHH-HHHHHHcCCEEEEecC-CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhHHhhhhc
Q 010568 283 RAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKK 360 (507)
Q Consensus 283 ~~~-~~~~l~~G~~v~l~~~-~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 360 (507)
... ++.++..|+++++.+. ++..+++.++++++|++.++|.+++.++......
T Consensus 229 ~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~------------------------- 283 (517)
T PRK08008 229 QCTAAMAAFSAGATFVLLEKYSARAFWGQVCKYRATITECIPMMIRTLMVQPPSA------------------------- 283 (517)
T ss_pred HHHHHHHHHhcCcEEEEccccCHHHHHHHHHHcCCcEEechHHHHHHHHhCCCcc-------------------------
Confidence 655 6778999999999876 8999999999999999999999998875411000
Q ss_pred CCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhCCcEEeecccccCccceeccCCCCCccCCcc
Q 010568 361 GHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTV 440 (507)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~s~ 440 (507)
... ..+++.+++++ ++++.....+.+.++.++++.||+||+++.++..........+++
T Consensus 284 ---------~~~-----------~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~ 342 (517)
T PRK08008 284 ---------NDR-----------QHCLREVMFYL-NLSDQEKDAFEERFGVRLLTSYGMTETIVGIIGDRPGDKRRWPSI 342 (517)
T ss_pred ---------ccc-----------cccceeeEEec-CCCHHHHHHHHHHhCCeEEeeccccccccccccCCccccccCCcc
Confidence 000 02567776654 788889889998889999999999999876665544444455789
Q ss_pred cccccCceEEEeecCCCccccCCCCCCceEEEec---CCccccccCChhhhhhhc-ccCceeec-cEEEecC
Q 010568 441 GPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKG---STVFSGYYKREDLTKEVM-VDGWFHTG-MGVWEQL 507 (507)
Q Consensus 441 G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g---~~v~~gY~~~~~~~~~~~-~dgw~~TG-lg~~d~d 507 (507)
|.|++|++++|+| ++++.++ .|+.|||+++| ++++.|||++++.+.+.| .||||+|| +|++|+|
T Consensus 343 G~~~~g~~~~i~d-~~~~~~~--~g~~Gel~v~g~~~~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~~ 411 (517)
T PRK08008 343 GRPGFCYEAEIRD-DHNRPLP--AGEIGEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTGDTGYVDEE 411 (517)
T ss_pred ccCCCCcEEEEEC-CCCCCCC--CCCcceEEEeCCCCcchhhhHhCChHHHhhcccCCCCeeccceEEECCC
Confidence 9999999999999 7776554 45899999998 689999999999999999 68999999 9999875
|
|
| >PRK10524 prpE propionyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-50 Score=427.14 Aligned_cols=407 Identities=14% Similarity=0.175 Sum_probs=310.2
Q ss_pred CCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHHHHH
Q 010568 44 ESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEAC 123 (507)
Q Consensus 44 ~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~ 123 (507)
+...++|+++++.+||++|+++. +..++..+.+||+||.++++++|++|+++|+++||+|+++++|++++++++|||
T Consensus 53 n~~~~~l~~~~~~~p~~~A~~~~---~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~ 129 (629)
T PRK10524 53 NLCHNAVDRHLAKRPEQLALIAV---STETDEERTYTFRQLHDEVNRMAAMLRSLGVQRGDRVLIYMPMIAEAAFAMLAC 129 (629)
T ss_pred eHHHHHHHHhhccCCCCeEEEEE---cCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHH
Confidence 44688898998899999999975 433344578999999999999999999999999999999999999999999999
Q ss_pred HhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCCh---------hHHhhcCCCCCCCccEEEEecCCChhhHHHHhh
Q 010568 124 NALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKI---------PEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEK 194 (507)
Q Consensus 124 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 194 (507)
+++|++++|++|.++.+++..++++++++++|+++... ..+.+...........+++++...... ..
T Consensus 130 ~~~Gav~v~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~----~~ 205 (629)
T PRK10524 130 ARIGAIHSVVFGGFASHSLAARIDDAKPVLIVSADAGSRGGKVVPYKPLLDEAIALAQHKPRHVLLVDRGLAPM----AR 205 (629)
T ss_pred HHhCcEEEeeCCCCCHHHHHHHHHhcCCcEEEEccCcccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCc----Cc
Confidence 99999999999999999999999999999999976421 222222211112344566555321100 00
Q ss_pred cCceEeeHHHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEe
Q 010568 195 YGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSY 274 (507)
Q Consensus 195 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~ 274 (507)
.......++++.........+.....++++++++|||||||.||+|+++|.+++....... ....++..+|++++.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~il~TSGTTG~PKgV~~~~~~~~~~~~~~~----~~~~~~~~~d~~~~~ 281 (629)
T PRK10524 206 VAGRDVDYATLRAQHLGARVPVEWLESNEPSYILYTSGTTGKPKGVQRDTGGYAVALATSM----DTIFGGKAGETFFCA 281 (629)
T ss_pred ccCCcccHHHHHhcCCCCCCCceeeCCCCceEEEeecCCCCCCceEEECCcHHHHHHHHHH----HHhcCCCCCCEEEEc
Confidence 0111234666554322222222234678999999999999999999999998765443321 112367888999999
Q ss_pred cChHHHHHHHH-HHHHHHcCCEEEEecC-----CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHH
Q 010568 275 LPLAHIFDRAI-EEVFISNGAAIGFWRG-----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFN 348 (507)
Q Consensus 275 ~pl~h~~g~~~-~~~~l~~G~~v~l~~~-----~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~ 348 (507)
.|++|..+... ++.+++.|+++++.+. ++..+++.|+++++|+++++|++++.+.+....
T Consensus 282 ~~~~~~~~~~~~~~~~l~~G~~~v~~~g~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~-------------- 347 (629)
T PRK10524 282 SDIGWVVGHSYIVYAPLLAGMATIMYEGLPTRPDAGIWWRIVEKYKVNRMFSAPTAIRVLKKQDPA-------------- 347 (629)
T ss_pred CCCCeeccchHHHHHHHhCCCEEEEECCCCCCCChHHHHHHHHHcCceEEEeCHHHHHHHHhcCcc--------------
Confidence 99999888654 7788999999998763 688999999999999999999999887542100
Q ss_pred HHHHhHHhhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhCCcEEeecccccCccceec
Q 010568 349 IAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFV 428 (507)
Q Consensus 349 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~~~v~~~YG~tE~~~~~~~ 428 (507)
.....++ ++||.+++||+++++++.+++.+.+++++++.||+||++..+..
T Consensus 348 ---------------------~~~~~~l--------~~lr~i~~~Ge~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~ 398 (629)
T PRK10524 348 ---------------------LLRKHDL--------SSLRALFLAGEPLDEPTASWISEALGVPVIDNYWQTETGWPILA 398 (629)
T ss_pred ---------------------cccccCh--------hheeEEEEeCCCCCHHHHHHHHHhcCCCeEeccccccccchhhc
Confidence 0011111 37999999999999999999999899999999999999854333
Q ss_pred cCCC---CCccCCcccccccCceEEEeecC-CCccccCCCCCCceEEEecC---CccccccCChhhhhhhc----ccCce
Q 010568 429 SLPN---EMSMIGTVGPPVPNVDVCLESVP-EMEYDALSSTPRGEVCVKGS---TVFSGYYKREDLTKEVM----VDGWF 497 (507)
Q Consensus 429 ~~~~---~~~~~~s~G~p~pg~~i~ivd~~-~~~~~~~~~g~~Gel~v~g~---~v~~gY~~~~~~~~~~~----~dgw~ 497 (507)
.... ....++++|+|+||++++|+| + ++..+ +.|+.|||+++|| +++.|||++++.+.+.+ .+|||
T Consensus 399 ~~~~~~~~~~~~~~~G~p~~g~~~~i~d-~~~g~~~--~~g~~Gel~i~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (629)
T PRK10524 399 IARGVEDRPTRLGSPGVPMYGYNVKLLN-EVTGEPC--GPNEKGVLVIEGPLPPGCMQTVWGDDDRFVKTYWSLFGRQVY 475 (629)
T ss_pred CCCCcccCcCCCCCcccCcCCceEEEEe-CCCCCCC--CCCCcEEEEEcCCCChhhcCCccCChHHHHHhhhccCCCcEE
Confidence 2221 123358999999999999999 6 66654 4569999999998 57899999998776654 46899
Q ss_pred eec-cEEEecC
Q 010568 498 HTG-MGVWEQL 507 (507)
Q Consensus 498 ~TG-lg~~d~d 507 (507)
+|| +|++|+|
T Consensus 476 ~TGDl~~~d~d 486 (629)
T PRK10524 476 STFDWGIRDAD 486 (629)
T ss_pred EcCCcEEEcCC
Confidence 999 9999976
|
|
| >PRK06187 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-50 Score=416.61 Aligned_cols=399 Identities=25% Similarity=0.409 Sum_probs=334.0
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHH
Q 010568 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120 (507)
Q Consensus 41 ~~~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~ 120 (507)
....++.++|+++++.+|+++|+.+. +. .+||+||.++++++|+.|.+.|+++|++|+++++|++++++++
T Consensus 3 ~~~~~l~~~l~~~~~~~p~~~a~~~~---~~------~~Ty~~l~~~~~~~a~~L~~~g~~~~~~V~l~~~~~~~~~~~~ 73 (521)
T PRK06187 3 DYPLTIGRILRHGARKHPDKEAVYFD---GR------RTTYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAY 73 (521)
T ss_pred cccCCHHHHHHHHHHHCCCceEEEeC---Cc------eEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHH
Confidence 35578999999999999999999876 43 4999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCceEe
Q 010568 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVY 200 (507)
Q Consensus 121 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 200 (507)
+||+++|++++++++..+.+++..+++.++++.++++.+....+.+..... +.++.++.+++.... .......
T Consensus 74 la~~~~G~~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------~~~~~~~ 146 (521)
T PRK06187 74 FAVPKIGAVLHPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLLAAILPQL-PTVRTVIVEGDGPAA------PLAPEVG 146 (521)
T ss_pred HHHHHcCeEEEecccCCCHHHHHHHHHhcCCeEEEEcchHHHHHHHHhhcc-CCccEEEEecCcccc------ccccccc
Confidence 999999999999999999999999999999999999988766655544332 455666666543210 0112345
Q ss_pred eHHHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHH
Q 010568 201 SWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHI 280 (507)
Q Consensus 201 ~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~ 280 (507)
.+.+++..... .........+++++++|||||||.||+|.++|.++......... ..++..+|++++.+|++|.
T Consensus 147 ~~~~~~~~~~~-~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~-----~~~~~~~d~~~~~~~~~~~ 220 (521)
T PRK06187 147 EYEELLAAASD-TFDFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCA-----WLKLSRDDVYLVIVPMFHV 220 (521)
T ss_pred cHHHHhhcCCc-cCCCCCCCccceEEEEECCCCCCCCceEEeehHHHHHHHHHHHH-----hhCCCCCCEEEEeCCchHH
Confidence 66666654422 22233456788999999999999999999999999988877444 3478899999999999999
Q ss_pred HHHHHHHHHHHcCCEEEEecC-CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhHHhhhh
Q 010568 281 FDRAIEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLK 359 (507)
Q Consensus 281 ~g~~~~~~~l~~G~~v~l~~~-~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 359 (507)
+++...+.++..|+++++.+. ++..+++.++++++|+++++|++++.+++.....
T Consensus 221 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~------------------------ 276 (521)
T PRK06187 221 HAWGLPYLALMAGAKQVIPRRFDPENLLDLIETERVTFFFAVPTIWQMLLKAPRAY------------------------ 276 (521)
T ss_pred hhHHHHHHHHHhCCEEEecCCCCHHHHHHHHHHhCCeEEEchHHHHHHHHcCcCCC------------------------
Confidence 999887779999999999876 9999999999999999999999999986532110
Q ss_pred cCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhCCcEEeecccccCccceeccCCCCC-----
Q 010568 360 KGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEM----- 434 (507)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~----- 434 (507)
..++ +++|.+++||++++.++.+.+.+.+++++++.||+||+++++........
T Consensus 277 -------------~~~~--------~~l~~v~~~Ge~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~ 335 (521)
T PRK06187 277 -------------FVDF--------SSLRLVIYGGAALPPALLREFKEKFGIDLVQGYGMTETSPVVSVLPPEDQLPGQW 335 (521)
T ss_pred -------------ccCc--------chhhEEEEcCcCCCHHHHHHHHHHhCcchheeeccCccCcccccCCccccccccc
Confidence 0011 37899999999999999999999889999999999999877666544333
Q ss_pred ccCCcccccccCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhcccCceeec-cEEEecC
Q 010568 435 SMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG-MGVWEQL 507 (507)
Q Consensus 435 ~~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~dgw~~TG-lg~~d~d 507 (507)
....++|+|+||++++|+| +++..++.+.|+.|||+++|+.++.||+++++.+.+.|.+|||+|| ++++|+|
T Consensus 336 ~~~~~~G~~~~~~~~~i~~-~~~~~~~~~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~~~~tGD~~~~~~~ 408 (521)
T PRK06187 336 TKRRSAGRPLPGVEARIVD-DDGDELPPDGGEVGEIIVRGPWLMQGYWNRPEATAETIDGGWLHTGDVGYIDED 408 (521)
T ss_pred ccCCccccccCCeEEEEEC-CCCCCCCCCCCCeeEEEEECcchhhhhcCCHHHHHHHhhCCceeccceEEEcCC
Confidence 2458999999999999999 8887676655799999999999999999999999999989999999 9999875
|
|
| >PRK08314 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-49 Score=417.37 Aligned_cols=399 Identities=22% Similarity=0.315 Sum_probs=317.8
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHC-CCCCCCEEEEEeCCchhhHHHHH
Q 010568 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTC-GVEERGKCGIYGVNCPEWIIGME 121 (507)
Q Consensus 43 ~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~-gv~~gd~V~i~~~n~~~~~~~~l 121 (507)
..|+.++|.+.++++|+++|+++. + +++||.||.+++.++|..|.+. |+++||+|+|+++|+++++++++
T Consensus 9 ~~tl~~~l~~~a~~~~~~~a~~~~---~------~~~Ty~~l~~~v~~~a~~L~~~~g~~~g~~V~i~~~~~~~~~~~~l 79 (546)
T PRK08314 9 ETSLFHNLEVSARRYPDKTAIVFY---G------RAISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYY 79 (546)
T ss_pred CCCHHHHHHHHHHHcCCCcceeec---C------ceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCChHHHHHHH
Confidence 468999999999999999999875 3 4699999999999999999998 99999999999999999999999
Q ss_pred HHHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCCh--h-----hHHHH--
Q 010568 122 ACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKP--E-----QREEI-- 192 (507)
Q Consensus 122 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~-----~~~~~-- 192 (507)
||+++|++++|++|..+.+++.++++.++++.+|++.+....+....... .++.++....... . .....
T Consensus 80 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (546)
T PRK08314 80 AILRANAVVVPVNPMNREEELAHYVTDSGARVAIVGSELAPKVAPAVGNL--RLRHVIVAQYSDYLPAEPEIAVPAWLRA 157 (546)
T ss_pred HHHHcCcEEeecCcCcCHHHHHHHHHhCCCeEEEEccchhhhHHHHhhcc--CcceEEEecchhhcccccccCccccccc
Confidence 99999999999999999999999999999999999987766554433221 2333333211000 0 00000
Q ss_pred -----hhcCceEeeHHHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCC
Q 010568 193 -----EKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTS 267 (507)
Q Consensus 193 -----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~ 267 (507)
...+.....|++...... ........++++++++|||||||.||+|.++|.+++.++......+ .+..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~ 230 (546)
T PRK08314 158 EPPLQALAPGGVVAWKEALAAGL--APPPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWS-----NSTP 230 (546)
T ss_pred ccccccccccccccHHHHhcccC--CCCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhh-----CCCC
Confidence 000112345666654331 1223344678999999999999999999999999999888744433 6788
Q ss_pred CcEEEEecChHHHHHHHH-HHHHHHcCCEEEEecC-CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHH
Q 010568 268 EDVYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKT 345 (507)
Q Consensus 268 ~d~~l~~~pl~h~~g~~~-~~~~l~~G~~v~l~~~-~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~ 345 (507)
+|++++.+|++|.+|+.. ++.++..|+++++.+. ++..+++.++++++|++.++|.++..++...
T Consensus 231 ~d~~l~~~p~~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~ll~~~------------- 297 (546)
T PRK08314 231 ESVVLAVLPLFHVTGMVHSMNAPIYAGATVVLMPRWDREAAARLIERYRVTHWTNIPTMVVDFLASP------------- 297 (546)
T ss_pred CceEEEEcCchHHHHHHHHHHHHHHcCCeEEecCCCCHHHHHHHHHHhcCceecccHHHHHHHHhCC-------------
Confidence 999999999999999865 6788999999999876 8999999999999999999999998875410
Q ss_pred HHHHHHHhHHhhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhCCcEEeecccccCccc
Q 010568 346 LFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAG 425 (507)
Q Consensus 346 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~~~v~~~YG~tE~~~~ 425 (507)
.....++ +++|.+++||+++++++.+++.+.++.++++.||+||++..
T Consensus 298 ------------------------~~~~~~~--------~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~ 345 (546)
T PRK08314 298 ------------------------GLAERDL--------SSLRYIGGGGAAMPEAVAERLKELTGLDYVEGYGLTETMAQ 345 (546)
T ss_pred ------------------------CccccCc--------hhhheeeeccccCCHHHHHHHHHHcCCcEEecccccccccc
Confidence 0011111 26899999999999999999999889999999999999887
Q ss_pred eeccCCCCCccCCcccccccCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhcc--c--Cceeec-
Q 010568 426 TFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV--D--GWFHTG- 500 (507)
Q Consensus 426 ~~~~~~~~~~~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~--d--gw~~TG- 500 (507)
+........ ..+++|+|++|++++|+|.+++..+ +.|+.|||+|+|++++.||+++++.+++.|. + +||+||
T Consensus 346 ~~~~~~~~~-~~~~~G~~~~g~~~~i~d~~~~~~~--~~g~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~TGD 422 (546)
T PRK08314 346 THSNPPDRP-KLQCLGIPTFGVDARVIDPETLEEL--PPGEVGEIVVHGPQVFKGYWNRPEATAEAFIEIDGKRFFRTGD 422 (546)
T ss_pred eecCCCcCC-CCCccCcccCCeEEEEEeCCCCcCC--CCCCceEEEEECCchhccccCChhHhhhhhhhcCCCceEecCC
Confidence 665544333 3478999999999999992334444 4558999999999999999999999998882 3 499999
Q ss_pred cEEEecC
Q 010568 501 MGVWEQL 507 (507)
Q Consensus 501 lg~~d~d 507 (507)
+|++|+|
T Consensus 423 l~~~~~~ 429 (546)
T PRK08314 423 LGRMDEE 429 (546)
T ss_pred EEEEcCC
Confidence 9999875
|
|
| >PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-49 Score=413.95 Aligned_cols=393 Identities=20% Similarity=0.216 Sum_probs=315.4
Q ss_pred CCCCCCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHH
Q 010568 39 PIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWII 118 (507)
Q Consensus 39 ~~~~~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~ 118 (507)
.+...+|+.++|+++++.+||++|+++. + +.+||.||.++++++|+.|.+.|+++|++|+++++|++++++
T Consensus 16 ~~~~~~~l~~~l~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~v~~la~~L~~~gi~~g~~V~v~~~n~~~~~~ 86 (542)
T PRK06155 16 LPPSERTLPAMLARQAERYPDRPLLVFG---G------TRWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLD 86 (542)
T ss_pred CCccccCHHHHHHHHHHHCCCCeEEEeC---C------ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHH
Confidence 3456788999999999999999999864 3 469999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCce
Q 010568 119 GMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLA 198 (507)
Q Consensus 119 ~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 198 (507)
++|||+++|++++|+++.++.+++..+++.++++++|++.+....+.+..... ..++.++.++..... . .
T Consensus 87 ~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~-----~ 156 (542)
T PRK06155 87 VFLGCAWLGAIAVPINTALRGPQLEHILRNSGARLLVVEAALLAALEAADPGD-LPLPAVWLLDAPASV----S-----V 156 (542)
T ss_pred HHHHHHHhCCEEEEeccccCHHHHHHHHHhcCceEEEEChhhHHHHHHhcccc-cCcceEEEecCcccc----c-----c
Confidence 99999999999999999999999999999999999999987766554433222 234455555532110 0 0
Q ss_pred EeeHHHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChH
Q 010568 199 VYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLA 278 (507)
Q Consensus 199 ~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~ 278 (507)
...|..................++++++++|||||||.||+|.++|.++.......... ..+..++++++.+|++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PK~V~~t~~~~~~~~~~~~~~-----~~~~~~~~~l~~~pl~ 231 (542)
T PRK06155 157 PAGWSTAPLPPLDAPAPAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAED-----LEIGADDVLYTTLPLF 231 (542)
T ss_pred ccccchhhhcccCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEEHHHHHHHHHHHHHh-----cCCCCCCEEEEecCHH
Confidence 00111110001111112233467899999999999999999999999998877664333 3688999999999999
Q ss_pred HHHHHHHHHHHHHcCCEEEEecC-CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhHHhh
Q 010568 279 HIFDRAIEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHN 357 (507)
Q Consensus 279 h~~g~~~~~~~l~~G~~v~l~~~-~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (507)
|.+++..++.++..|+++++.+. ++..+++.|+++++|+++++|+++..+.+......
T Consensus 232 ~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~--------------------- 290 (542)
T PRK06155 232 HTNALNAFFQALLAGATYVLEPRFSASGFWPAVRRHGATVTYLLGAMVSILLSQPARES--------------------- 290 (542)
T ss_pred HHHHHHHHHHHHHcCceEEeeCCCCHHHHHHHHHHhCCcEEEchHHHHHHHHcCcCccc---------------------
Confidence 99999888899999999998876 89999999999999999999999988754211000
Q ss_pred hhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhCCcEEeecccccCccceeccCCCCCccC
Q 010568 358 LKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMI 437 (507)
Q Consensus 358 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~ 437 (507)
...++++.++.|| +++.+.+.+++.+++++++.||+||++.++..... ...+
T Consensus 291 ------------------------~~~~~l~~~~~g~--~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~--~~~~ 342 (542)
T PRK06155 291 ------------------------DRAHRVRVALGPG--VPAALHAAFRERFGVDLLDGYGSTETNFVIAVTHG--SQRP 342 (542)
T ss_pred ------------------------cccCceEEEEEcC--CCHHHHHHHHHHcCCCEEeeecccccCccccCCCC--CCCC
Confidence 0013788877666 57888899999899999999999999887665432 2345
Q ss_pred CcccccccCceEEEeecCCCccccCCCCCCceEEEecC---CccccccCChhhhhhhcccCceeec-cEEEecC
Q 010568 438 GTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGS---TVFSGYYKREDLTKEVMVDGWFHTG-MGVWEQL 507 (507)
Q Consensus 438 ~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~---~v~~gY~~~~~~~~~~~~dgw~~TG-lg~~d~d 507 (507)
+++|.|++|++++|+| +++..++. |+.|||+++|+ .++.||+++++.+...|.+|||+|| +|++|+|
T Consensus 343 ~~vG~~~~~~~~~i~d-~~~~~~~~--g~~Gei~v~~~~~~~~~~GY~~~~~~~~~~~~~~~~~TGD~~~~~~d 413 (542)
T PRK06155 343 GSMGRLAPGFEARVVD-EHDQELPD--GEPGELLLRADEPFAFATGYFGMPEKTVEAWRNLWFHTGDRVVRDAD 413 (542)
T ss_pred CCcCccCCCceEEEEC-CCCCCCCC--CCceEEEEecCCccccchhhcCCHHHHHHhhcCCcEeccceEEEcCC
Confidence 7899999999999999 77765554 58999999998 6999999999999999999999999 9999875
|
|
| >PRK05852 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-49 Score=416.44 Aligned_cols=400 Identities=20% Similarity=0.239 Sum_probs=307.0
Q ss_pred CCCCCCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHH
Q 010568 39 PIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWII 118 (507)
Q Consensus 39 ~~~~~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~ 118 (507)
..+...|+.++|+++++++||++|+++. ++. +.+||.||.++++++|++|.+.|+++||+|+|+++|++++++
T Consensus 11 ~~~~~~~l~~~l~~~a~~~p~~~ai~~~---~~~----~~~Ty~~l~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~ 83 (534)
T PRK05852 11 ASDFGPRIADLVEVAATRLPEAPALVVT---ADR----IAISYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNAEFVV 83 (534)
T ss_pred hhhhcccHHHHHHHHHHhCCCCcEEEec---CCC----CcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHH
Confidence 4466788999999999999999999865 332 469999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCce
Q 010568 119 GMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLA 198 (507)
Q Consensus 119 ~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 198 (507)
++|||+++|+++++++|.++.+++.++++.++++.+|++............ ......+.+....... .+..
T Consensus 84 ~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~------~~~~ 154 (534)
T PRK05852 84 ALLAASRADLVVVPLDPALPIAEQRVRSQAAGARVVLIDADGPHDRAEPTT---RWWPLTVNVGGDSGPS------GGTL 154 (534)
T ss_pred HHHHHHHcCcEEeecCCCCCcHHHHHHHHhCCCCEEEEcCCCcchhccccc---cccceeeeeccccccc------cccc
Confidence 999999999999999999999999999999999999998653321111100 0111112211110000 0000
Q ss_pred EeeHHHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChH
Q 010568 199 VYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLA 278 (507)
Q Consensus 199 ~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~ 278 (507)
...+..... . ......+....++.++++|||||||.||+|.++|.++...+..+...+ .+..+|++++.+|++
T Consensus 155 ~~~~~~~~~-~-~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~~~~~~~~~~~~~~~~~-----~~~~~d~~~~~~p~~ 227 (534)
T PRK05852 155 SVHLDAATE-P-TPATSTPEGLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGY-----RLSPRDATVAVMPLY 227 (534)
T ss_pred ccccccccC-C-CccccccCCCCCCceEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHh-----CCCCcceEEEecCcc
Confidence 000100000 0 000111122356789999999999999999999999998888755444 688899999999999
Q ss_pred HHHHHHH-HHHHHHcCCEEEEecC---CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhH
Q 010568 279 HIFDRAI-EEVFISNGAAIGFWRG---DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYK 354 (507)
Q Consensus 279 h~~g~~~-~~~~l~~G~~v~l~~~---~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (507)
|.+++.. ++.+++.|+++++++. ++..+++.|+++++|.++++|.+++.+.+.......
T Consensus 228 ~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~----------------- 290 (534)
T PRK05852 228 HGHGLIAALLATLASGGAVLLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQILLERAATEPS----------------- 290 (534)
T ss_pred hhHHHHHHHHHHHhcCCeEEeCCCcCcCHHHHHHHHHHcCCcEEEcChHHHHHHHhhcccccc-----------------
Confidence 9999876 6777999999888652 788999999999999999999999998653211100
Q ss_pred HhhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhCCcEEeecccccCccceeccCCCC-
Q 010568 355 FHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNE- 433 (507)
Q Consensus 355 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~- 433 (507)
....+++|.++++|+++++++.+.+.+.++.++++.||+||++..++......
T Consensus 291 --------------------------~~~~~~lr~i~~~G~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~ 344 (534)
T PRK05852 291 --------------------------GRKPAALRFIRSCSAPLTAETAQALQTEFAAPVVCAFGMTEATHQVTTTQIEGI 344 (534)
T ss_pred --------------------------cccCCCeeEEEECCCCCCHHHHHHHHHHhCCChhhccCccccchhhhcCCcccc
Confidence 00014799999999999999999999999999999999999987665443211
Q ss_pred ---CccCCccccc--ccCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhcccCceeec-cEEEecC
Q 010568 434 ---MSMIGTVGPP--VPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG-MGVWEQL 507 (507)
Q Consensus 434 ---~~~~~s~G~p--~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~dgw~~TG-lg~~d~d 507 (507)
.....++|.+ .+|++++|+| ++++.++ .|+.|||+|+|+.++.||+++++.+++.|.+|||+|| +|++|+|
T Consensus 345 ~~~~~~~~~~g~~g~~~g~~~~i~d-~~g~~~~--~g~~Gel~v~g~~v~~gY~~~~~~t~~~~~~g~~~TGD~~~~d~d 421 (534)
T PRK05852 345 GQTENPVVSTGLVGRSTGAQIRIVG-SDGLPLP--AGAVGEVWLRGTTVVRGYLGDPTITAANFTDGWLRTGDLGSLSAA 421 (534)
T ss_pred ccccCcccccccCCCCCCCeEEEEC-CCCCCCC--CCCceEEEEecCcccchhcCCcccchhhhcCCCcccCceEEEeCC
Confidence 1111234444 7999999999 8776554 4599999999999999999999999999999999999 9999976
|
|
| >TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-49 Score=413.39 Aligned_cols=390 Identities=15% Similarity=0.170 Sum_probs=309.9
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHHHH
Q 010568 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (507)
Q Consensus 43 ~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (507)
..++.++|+++++++|+++|+++. + +.+||.||.++++++|..|.+.|+++|++|+++++|+++++++++|
T Consensus 22 ~~~l~~~~~~~a~~~p~~~a~~~~----~-----~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la 92 (527)
T TIGR02275 22 DKPLTDILRDQAARYPDAIAIICG----N-----RQWSYRELDQRADNLAAGLTKLGIGQGDTAVVQLPNIAEFYIVFFA 92 (527)
T ss_pred CCcHHHHHHHHHHHCCCceEEEeC----C-----ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHH
Confidence 467999999999999999999853 2 4699999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChh----HHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCce
Q 010568 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIP----EMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLA 198 (507)
Q Consensus 123 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 198 (507)
|+++|++++++++..+.+++.++++.++++.++++..... .+........+.++.++.......
T Consensus 93 ~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 160 (527)
T TIGR02275 93 LLKLGIAPVLALFSHRKSELTAYAQQIEPALYIIDRAHSLFDYDAFARQLQSKLPTLRNIIVAGQTRV------------ 160 (527)
T ss_pred HHHcCeEEeccccccCHHHHHHHHHhcCCcEEEEcCcccccchHHHHHHHHhhCCcceEEEEecCCCC------------
Confidence 9999999999999999999999999999999999865321 111111111133444444432110
Q ss_pred EeeHHHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChH
Q 010568 199 VYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLA 278 (507)
Q Consensus 199 ~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~ 278 (507)
.......+.... .....+...++++++++|||||||.||+|.++|.++..++......+ .+..+|++++.+|++
T Consensus 161 ~~~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~P~~ 234 (527)
T TIGR02275 161 EAELFLWLESPA-EPVKFPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEIC-----WLTQQTRYLCALPAA 234 (527)
T ss_pred cchhhHHhhCcC-ccccCCCCCCCccEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhc-----CCCcCCEEEECCChH
Confidence 001111121111 11222345678999999999999999999999999998887754433 678899999999999
Q ss_pred HHHHHHH--HHHHHHcCCEEEEecC-CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhHH
Q 010568 279 HIFDRAI--EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKF 355 (507)
Q Consensus 279 h~~g~~~--~~~~l~~G~~v~l~~~-~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (507)
|.+++.. ++.++..|+++++.+. ++..+++.++++++|+++++|.+++.+++.......
T Consensus 235 h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~------------------ 296 (527)
T TIGR02275 235 HNYPLSSPGALGVFYAGGCVVLAPDPSPTDCFPLIERHKVTVTALVPPAVALWMQAASKSRY------------------ 296 (527)
T ss_pred hhhhhhHHHHHHHHhcCCeEEECCCCCHHHHHHHHHHhCCeEEEecHHHHHHHHhCccccCC------------------
Confidence 9999864 6778999999988765 899999999999999999999999887653221100
Q ss_pred hhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhCCcEEeecccccCccceeccCCCCCc
Q 010568 356 HNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMS 435 (507)
Q Consensus 356 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~ 435 (507)
..+++|.+++||++++.++.+.+.+.++.++++.||+||++............
T Consensus 297 ---------------------------~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~ 349 (527)
T TIGR02275 297 ---------------------------DLSSLKLLQVGGAKFSEAAARRVPAVFGCQLQQVFGMAEGLVNYTRLDDPAEI 349 (527)
T ss_pred ---------------------------CccceEEEEEcCCCCCHHHHHHHHHHhCCeEEeeeccCccCccccCCCCcccc
Confidence 01379999999999999999999998999999999999976443322212222
Q ss_pred cCCcccccc-cCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhc-ccCceeec-cEEEecC
Q 010568 436 MIGTVGPPV-PNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTG-MGVWEQL 507 (507)
Q Consensus 436 ~~~s~G~p~-pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~-~dgw~~TG-lg~~d~d 507 (507)
..+++|+|+ ++++++|+| ++++..+ .|+.|||+++|+.++.||+++++.+...| .||||+|| +|++|+|
T Consensus 350 ~~~~~G~~~~~~~~v~i~d-~~g~~~~--~g~~Gei~v~g~~~~~gY~~~~~~~~~~~~~dg~~~TGDl~~~~~~ 421 (527)
T TIGR02275 350 IFTTQGRPMSPDDEVRVVD-DHGNPVA--PGETGMLLTRGPYTFRGYYKAPEHNAAAFDAEGFYYTGDLVRLTPE 421 (527)
T ss_pred ccccCCCCCCCCceEEEEC-CCCCCCC--CCCceEEEecCCccchhhcCChhHhHhhcCcCCCEEcCceEEEcCC
Confidence 346899999 589999999 7776554 45999999999999999999999999988 78999999 9999875
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB. |
| >PLN02330 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-49 Score=413.81 Aligned_cols=409 Identities=21% Similarity=0.300 Sum_probs=318.2
Q ss_pred CCceeecCccCCCCCCCCCCCCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCC
Q 010568 23 IGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEE 102 (507)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~ 102 (507)
.+..||+..... ..+...|+.++|.+.++++|+++|+++. .+. +.+||.||.+++.++|+.|.+.|+++
T Consensus 11 ~~~~~~~~~~~~----~~~~~~~~~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~~l~~~~~~la~~L~~~g~~~ 79 (546)
T PLN02330 11 NEHIFRSRYPSV----PVPDKLTLPDFVLQDAELYADKVAFVEA---VTG----KAVTYGEVVRDTRRFAKALRSLGLRK 79 (546)
T ss_pred cceeeccCCCCC----CCCCCCcHHHHHhhhhhcCCCccEEEec---CCC----CcccHHHHHHHHHHHHHHHHHhCCCC
Confidence 456777775443 2345688999999999999999999864 222 46999999999999999999999999
Q ss_pred CCEEEEEeCCchhhHHHHHHHHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEec
Q 010568 103 RGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFS 182 (507)
Q Consensus 103 gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~ 182 (507)
||+|+++++|+++++++++||+++|++++|+++..+.+++.++++.++++++|+++.....+.... . .++.++
T Consensus 80 g~~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~------~-~~i~~~ 152 (546)
T PLN02330 80 GQVVVVVLPNVAEYGIVALGIMAAGGVFSGANPTALESEIKKQAEAAGAKLIVTNDTNYGKVKGLG------L-PVIVLG 152 (546)
T ss_pred CCEEEEECCCchHHHHHHHHHHHhCcEeccCCccCCHHHHHHHHHhcCCeEEEEccchhhhHhhcC------C-cEEEec
Confidence 999999999999999999999999999999999999999999999999999999987666543321 1 233333
Q ss_pred CCChhhHHHHhhcCceEeeHHHHHhccccCC--CCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhh
Q 010568 183 KVKPEQREEIEKYGLAVYSWDEFLQLGENKQ--FDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLES 260 (507)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~ 260 (507)
.... .....|.+++....... .......++++++++|||||||.||+|.++|.++..++.... +.
T Consensus 153 ~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~--~~- 219 (546)
T PLN02330 153 EEKI----------EGAVNWKELLEAADRAGDTSDNEEILQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSSL--FS- 219 (546)
T ss_pred CCCC----------CCcccHHHHHhhccccCcccccccCCcccEEEEEeCCCCcCCCcEEEEehHHHHHHHHHHh--hc-
Confidence 2110 12345666665432211 112334578999999999999999999999999987665421 11
Q ss_pred ccccCCCCcEEEEecChHHHHHHHH-HHHHHHcCCEEEEecC-CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhc
Q 010568 261 VNEKLTSEDVYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISS 338 (507)
Q Consensus 261 ~~~~~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~v~l~~~-~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~ 338 (507)
........++.+.++|++|.+++.. ++.++..|+++++.+. ++..+++.++++++|++.++|+++..+++...
T Consensus 220 ~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~----- 294 (546)
T PLN02330 220 VGPEMIGQVVTLGLIPFFHIYGITGICCATLRNKGKVVVMSRFELRTFLNALITQEVSFAPIVPPIILNLVKNPI----- 294 (546)
T ss_pred cCccccCceEEEEecChHHHHHHHHHHHHHhhcCCEEEEecccCHHHHHHHHHHcCCeeeecCCHHHHHHHhCcc-----
Confidence 1112234578999999999999865 6777999999988876 99999999999999999999999998865210
Q ss_pred cchhHHHHHHHHHHhHHhhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhh-CCcEEeec
Q 010568 339 GGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGY 417 (507)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~-~~~v~~~Y 417 (507)
....++.. .++|.+++||+++++++.+++++.+ ++++++.|
T Consensus 295 --------------------------------~~~~~~~~------~~l~~i~~~g~~l~~~~~~~~~~~~~~~~~~~~Y 336 (546)
T PLN02330 295 --------------------------------VEEFDLSK------LKLQAIMTAAAPLAPELLTAFEAKFPGVQVQEAY 336 (546)
T ss_pred --------------------------------ccccccch------heeeeEEEcCCcCCHHHHHHHHHHcCCCeEEecc
Confidence 00011110 1578999999999999999999988 89999999
Q ss_pred ccccCccceeccCCCC----CccCCcccccccCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhc-
Q 010568 418 GLTETCAGTFVSLPNE----MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM- 492 (507)
Q Consensus 418 G~tE~~~~~~~~~~~~----~~~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~- 492 (507)
|+||++.+........ ....+++|+|+||++++|+|.+++.. ++.|+.|||+|+|+.++.||+++++.+.+.+
T Consensus 337 G~tE~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~~~~--~p~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~ 414 (546)
T PLN02330 337 GLTEHSCITLTHGDPEKGHGIAKKNSVGFILPNLEVKFIDPDTGRS--LPKNTPGELCVRSQCVMQGYYNNKEETDRTID 414 (546)
T ss_pred cccccccceecCCCccccccccccCccccccCCcEEEEEeCCCCcc--CCCCCceEEEEecchhhhhhccCccchhhhcc
Confidence 9999976544322111 12346899999999999999333443 4456999999999999999999999998888
Q ss_pred ccCceeec-cEEEecC
Q 010568 493 VDGWFHTG-MGVWEQL 507 (507)
Q Consensus 493 ~dgw~~TG-lg~~d~d 507 (507)
.+|||+|| +|++|+|
T Consensus 415 ~~g~~~TGD~~~~~~d 430 (546)
T PLN02330 415 EDGWLHTGDIGYIDDD 430 (546)
T ss_pred CCCceecccEEEEeCC
Confidence 68999999 9999975
|
|
| >PRK05620 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-49 Score=414.54 Aligned_cols=408 Identities=17% Similarity=0.255 Sum_probs=321.2
Q ss_pred CCCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHH-CCCCCCCEEEEEeCCchhhHHHH
Q 010568 42 GMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRT-CGVEERGKCGIYGVNCPEWIIGM 120 (507)
Q Consensus 42 ~~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~-~gv~~gd~V~i~~~n~~~~~~~~ 120 (507)
...|+.++|++++..+||++|+++. +. .++.+||.||.+++.++|++|.+ .|+++||+|+++++|++++++++
T Consensus 8 ~~~~~~~~l~~~a~~~~~~~a~~~~---~~---~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~~~~~n~~e~~~~~ 81 (576)
T PRK05620 8 VPLSLTRILEYGSTVHGDTTVTTWG---GA---EQEQTTFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVL 81 (576)
T ss_pred CCCcHHHHHHHHHHhCCCceEEEEc---CC---ceEEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHH
Confidence 3468999999999999999999864 22 24789999999999999999996 89999999999999999999999
Q ss_pred HHHHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCceEe
Q 010568 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVY 200 (507)
Q Consensus 121 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 200 (507)
+||+++|+++++++|..+.+++.++++.++++++|++......+....... +..+.++.++..................
T Consensus 82 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 160 (576)
T PRK05620 82 FAVACMGAVFNPLNKQLMNDQIVHIINHAEDEVIVADPRLAEQLGEILKEC-PCVRAVVFIGPSDADSAAAHMPEGIKVY 160 (576)
T ss_pred HHHHhcCCEEeecccccCHHHHHHHHhccCCcEEEEChhhHHHHHHHHhhC-ccccEEEEecCcccccchhccccccccc
Confidence 999999999999999999999999999999999999987666554444332 4455565554321110000011122355
Q ss_pred eHHHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHH
Q 010568 201 SWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHI 280 (507)
Q Consensus 201 ~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~ 280 (507)
+|+++...... ........++++++++|||||||.||+|.++|.++........ ....+.+..++++++.+|++|.
T Consensus 161 ~~~~l~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~pl~h~ 236 (576)
T PRK05620 161 SYEALLDGRST-VYDWPELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLR---TTDSLAVTHGESFLCCVPIYHV 236 (576)
T ss_pred cHHHHhhcCCC-cCCCCCCCccceeEEEECCCCCCCCceEEEEcHHHHHHHHHhh---hhhhcCCCCCCeEEEeCChHHh
Confidence 68888764322 2223345678999999999999999999999999865544321 1123467889999999999999
Q ss_pred HHHHHHHHHHHcCCEEEEecC--CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhHHhhh
Q 010568 281 FDRAIEEVFISNGAAIGFWRG--DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNL 358 (507)
Q Consensus 281 ~g~~~~~~~l~~G~~v~l~~~--~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 358 (507)
+++...+.++..|+++++.+. ++..+++.++++++++++++|+++..++........
T Consensus 237 ~g~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~--------------------- 295 (576)
T PRK05620 237 LSWGVPLAAFMSGTPLVFPGPDLSAPTLAKIIATAMPRVAHGVPTLWIQLMVHYLKNPP--------------------- 295 (576)
T ss_pred hhhHHHHHHHhcCceEEecCCCCCHHHHHHHHHHhcCceeeecCHHHHHHHHHhhccCc---------------------
Confidence 999888888999999988753 899999999999999999999999887653211100
Q ss_pred hcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhCCcEEeecccccCccceeccCCCC-----
Q 010568 359 KKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNE----- 433 (507)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~----- 433 (507)
+ ..++|.+++||+++++.+.+.+++.+++++++.||+||++..++......
T Consensus 296 -------------~-----------~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~ 351 (576)
T PRK05620 296 -------------E-----------RMSLQEIYVGGSAVPPILIKAWEERYGVDVVHVWGMTETSPVGTVARPPSGVSGE 351 (576)
T ss_pred -------------c-----------cCceeEEEEcCCCCCHHHHHHHHHHhCCceeeeccccccccceeeeccCCccccc
Confidence 0 02699999999999999999999988999999999999988765543321
Q ss_pred --CccCCcccccccCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhh----------------hhhc-cc
Q 010568 434 --MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLT----------------KEVM-VD 494 (507)
Q Consensus 434 --~~~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~----------------~~~~-~d 494 (507)
.....++|++.+|++++|+| + ++.++...++.|||+++|++++.|||++++.+ ..+| .+
T Consensus 352 ~~~~~~~~~G~~~~~~~~~i~~-~-g~~~~~~~~~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~f~~~~~~~~~~~~~~~ 429 (576)
T PRK05620 352 ARWAYRVSQGRFPASLEYRIVN-D-GQVMESTDRNEGEIQVRGNWVTASYYHSPTEEGGGAASTFRGEDVEDANDRFTAD 429 (576)
T ss_pred cccccccccCCcCCceeEEEec-C-CccccCCCCCceEEEEEcCcccccccCCccccccccccccccccchhhhcccccC
Confidence 01124789999999999999 5 66555545678999999999999999999887 3334 57
Q ss_pred Cceeec-cEEEecC
Q 010568 495 GWFHTG-MGVWEQL 507 (507)
Q Consensus 495 gw~~TG-lg~~d~d 507 (507)
|||+|| ++++|+|
T Consensus 430 g~~~TGD~~~~~~d 443 (576)
T PRK05620 430 GWLRTGDVGSVTRD 443 (576)
T ss_pred CcEecCceEEEcCC
Confidence 899999 9999876
|
|
| >PRK06839 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-49 Score=410.16 Aligned_cols=378 Identities=24% Similarity=0.275 Sum_probs=307.9
Q ss_pred CCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHH-CCCCCCCEEEEEeCCchhhHHHHHH
Q 010568 44 ESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRT-CGVEERGKCGIYGVNCPEWIIGMEA 122 (507)
Q Consensus 44 ~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~-~gv~~gd~V~i~~~n~~~~~~~~lA 122 (507)
..+.+.|++.++.+||++|+++. + +.+||.||.++++++|++|++ .|+++|++|+++++|+++++++++|
T Consensus 2 ~~~~~~~~~~a~~~p~~~a~~~~----~-----~~~ty~~l~~~~~~la~~L~~~~g~~~~~~V~i~~~~~~~~~~~~la 72 (496)
T PRK06839 2 QGIAYWIEKRAYLHPDRIAIITE----E-----EEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFA 72 (496)
T ss_pred ccHHHHHHHHHHHCCCCeEEEEC----C-----ceEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHH
Confidence 46889999999999999999853 2 579999999999999999985 7999999999999999999999999
Q ss_pred HHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCceEeeH
Q 010568 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSW 202 (507)
Q Consensus 123 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 202 (507)
|+++|++++|+++..+.+++..+++.++++++|++.+........... .....++.+. ++
T Consensus 73 ~~~~G~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~------------------~~ 132 (496)
T PRK06839 73 IAKVECIAVPLNIRLTENELIFQLKDSGTTVLFVEKTFQNMALSMQKV--SYVQRVISIT------------------SL 132 (496)
T ss_pred HHhcCcEEEecCcccCHHHHHHHHHhcCceEEEEcHHHHHHHHHhhhc--cCcceEEEec------------------ch
Confidence 999999999999999999999999999999999987655443332211 1112233222 22
Q ss_pred HHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHH
Q 010568 203 DEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282 (507)
Q Consensus 203 ~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g 282 (507)
+++.... ........++++++++|||||||.||+|.++|.++......... ...+..+|++++.+|++|.++
T Consensus 133 ~~~~~~~---~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~-----~~~~~~~d~~l~~~p~~~~~g 204 (496)
T PRK06839 133 KEIEDRK---IDNFVEKNESASFIICYTSGTTGKPKGAVLTQENMFWNALNNTF-----AIDLTMHDRSIVLLPLFHIGG 204 (496)
T ss_pred HhhhccC---CCCCCCCCCCCcEEEEeCCCCCCCCcEEEEEhHHHHHHHHHHHH-----HcCCCCCCeEEEeeCCcchhh
Confidence 2332221 11223345688999999999999999999999998766555322 336788999999999999999
Q ss_pred HHH-HHHHHHcCCEEEEecC-CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhHHhhhhc
Q 010568 283 RAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKK 360 (507)
Q Consensus 283 ~~~-~~~~l~~G~~v~l~~~-~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 360 (507)
+.. .+.++..|+++++.+. ++..+++.++++++|++.++|.+++.++......
T Consensus 205 ~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~------------------------- 259 (496)
T PRK06839 205 IGLFAFPTLFAGGVIIVPRKFEPTKALSMIEKHKVTVVMGVPTIHQALINCSKFE------------------------- 259 (496)
T ss_pred HHHHHHHHHhcCcEEEEccCCCHHHHHHHHHhhCCeEEEehHHHHHHHHhCcccc-------------------------
Confidence 876 5678999999988766 9999999999999999999999999986521110
Q ss_pred CCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhCCcEEeecccccCccceeccCCC-CCccCCc
Q 010568 361 GHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPN-EMSMIGT 439 (507)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~-~~~~~~s 439 (507)
.. ..+++|.+++||+++++++.+.+++. |+++++.||+||++..++..... .....++
T Consensus 260 ------------~~--------~~~~lr~~~~gG~~~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~ 318 (496)
T PRK06839 260 ------------TT--------NLQSVRWFYNGGAPCPEELMREFIDR-GFLFGQGFGMTETSPTVFMLSEEDARRKVGS 318 (496)
T ss_pred ------------cC--------CCcccceEEECCCCCCHHHHHHHHHh-CCeeEeeccCCCCCcceEecccccccccCCC
Confidence 00 01379999999999999999999886 89999999999998765444332 2334589
Q ss_pred ccccccCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhcccCceeec-cEEEecC
Q 010568 440 VGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG-MGVWEQL 507 (507)
Q Consensus 440 ~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~dgw~~TG-lg~~d~d 507 (507)
+|+|+++++++|+| +++.. ++.|+.|||+|+|+.++.||+++++.+...+.+|||+|| +|++|+|
T Consensus 319 ~G~p~~~~~~~i~d-~~~~~--~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~ 384 (496)
T PRK06839 319 IGKPVLFCDYELID-ENKNK--VEVGEVGELLIRGPNVMKEYWNRPDATEETIQDGWLCTGDLARVDED 384 (496)
T ss_pred CcccCCCceEEEEC-CCcCC--CCCCCceEEEEECCCcchhhcCChHHHHHHHcCCCeeecceEEEcCC
Confidence 99999999999999 77776 445699999999999999999999999988899999999 9999875
|
|
| >PRK07638 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-49 Score=408.28 Aligned_cols=371 Identities=19% Similarity=0.224 Sum_probs=303.5
Q ss_pred CCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHHHHH
Q 010568 44 ESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEAC 123 (507)
Q Consensus 44 ~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~ 123 (507)
+++.+.|+++++++||++|+++. + .++||.||.++++++|++|.+.|. +|++|+|+++|++++++++|||
T Consensus 1 ~~~~~~~~~~a~~~p~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~~~-~~~~v~i~~~~~~~~~~~~la~ 70 (487)
T PRK07638 1 MGITKEYKKHASLQPNKIAIKEN---D------RVLTYKDWFESVCKVANWLNEKES-KNKTIAILLENRIEFLQLFAGA 70 (487)
T ss_pred CChHHHHHHHHHhCCCCeEEecC---C------cEeeHHHHHHHHHHHHHHHHHhCC-CCCEEEEEcCCCHHHHHHHHHH
Confidence 46889999999999999999864 3 469999999999999999999985 8999999999999999999999
Q ss_pred HhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCceEeeHH
Q 010568 124 NALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWD 203 (507)
Q Consensus 124 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (507)
+++|++++|+++.++.+++.++++.++++.+|++......+... . ..++.++. +.
T Consensus 71 ~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~------~-~~~~~~~~------------------~~ 125 (487)
T PRK07638 71 AMAGWTCVPLDIKWKQDELKERLAISNADMIVTERYKLNDLPDE------E-GRVIEIDE------------------WK 125 (487)
T ss_pred HHcCeEEEecCccCCHHHHHHHHHhCCCCEEEEecccccchhhc------c-ceEEEehh------------------hh
Confidence 99999999999999999999999999999999987654433211 0 12222221 11
Q ss_pred HHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHH
Q 010568 204 EFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDR 283 (507)
Q Consensus 204 ~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~ 283 (507)
+...... ..........+++++++|||||||.||+|.++|.+++.++...... .++..+|+++...|++|..++
T Consensus 126 ~~~~~~~-~~~~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~-----~~~~~~d~~~~~~~l~~~~~l 199 (487)
T PRK07638 126 RMIEKYL-PTYAPIENVQNAPFYMGFTSGSTGKPKAFLRAQQSWLHSFDCNVHD-----FHMKREDSVLIAGTLVHSLFL 199 (487)
T ss_pred hhhhhcc-ccccccccCCCCcEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHh-----cCcCCCCEEEEeecchHHHHH
Confidence 1111110 0111112235678999999999999999999999998888774433 367889999999999998887
Q ss_pred HHHHHHHHcCCEEEEecC-CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhHHhhhhcCC
Q 010568 284 AIEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGH 362 (507)
Q Consensus 284 ~~~~~~l~~G~~v~l~~~-~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 362 (507)
..++.+++.|+++++.+. ++..+++.++++++|+++++|++++.+.+...
T Consensus 200 ~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~----------------------------- 250 (487)
T PRK07638 200 YGAISTLYVGQTVHLMRKFIPNQVLDKLETENISVMYTVPTMLESLYKENR----------------------------- 250 (487)
T ss_pred HHHHHHHccCcEEEEcCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCcC-----------------------------
Confidence 778888999999998876 99999999999999999999999998865200
Q ss_pred CCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhh-CCcEEeecccccCccceeccCCCCCccCCccc
Q 010568 363 KHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVSLPNEMSMIGTVG 441 (507)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~~~~~~s~G 441 (507)
...+.+.++++|++++.++.+++.+.+ +.++++.||+||++.++............++|
T Consensus 251 --------------------~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G 310 (487)
T PRK07638 251 --------------------VIENKMKIISSGAKWEAEAKEKIKNIFPYAKLYEFYGASELSFVTALVDEESERRPNSVG 310 (487)
T ss_pred --------------------cCCceeEEEEcCCCCCHHHHHHHHHHcCCCeEEEEecCCccCceEEecccccCCCCCCCC
Confidence 001455677888999999999999988 68999999999999877665544344557999
Q ss_pred ccccCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhcccCceeec-cEEEecC
Q 010568 442 PPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG-MGVWEQL 507 (507)
Q Consensus 442 ~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~dgw~~TG-lg~~d~d 507 (507)
+|+||++++|+| +++..++ .|+.|||+|+|+.++.||+++++.+...+.+|||+|| +|++|+|
T Consensus 311 ~~~~~~~~~i~d-~~g~~~~--~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~d~~ 374 (487)
T PRK07638 311 RPFHNVQVRICN-EAGEEVQ--KGEIGTVYVKSPQFFMGYIIGGVLARELNADGWMTVRDVGYEDEE 374 (487)
T ss_pred cccCCcEEEEEC-CCCCCCC--CCCCeEEEEecccceeeecCCHHHHhhhccCCcEecCccEeEcCC
Confidence 999999999999 7776554 5699999999999999999999988877789999999 9999975
|
|
| >PRK06087 short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-49 Score=411.60 Aligned_cols=391 Identities=19% Similarity=0.253 Sum_probs=313.0
Q ss_pred CCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHHHHH
Q 010568 44 ESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEAC 123 (507)
Q Consensus 44 ~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~ 123 (507)
.|+.++|++.++++||++|+++. ++ +.+||+||.++++++|++|++.|+++||+|+++++|+++++++++||
T Consensus 23 ~~l~~~~~~~~~~~pd~~a~~~~---~~-----~~~Ty~~l~~~v~~la~~l~~~G~~~gd~V~i~~~n~~~~~~~~lA~ 94 (547)
T PRK06087 23 ASLADYWQQTARAMPDKIAVVDN---HG-----ASYTYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLAC 94 (547)
T ss_pred CCHHHHHHHHHHHCCCceEEEcC---CC-----CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHH
Confidence 57999999999999999999864 33 46999999999999999999999999999999999999999999999
Q ss_pred HhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCCh-----hHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCce
Q 010568 124 NALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKI-----PEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLA 198 (507)
Q Consensus 124 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 198 (507)
+++|++++|++|.++.+++..+++.++++++|++.... ..+...... ....+.++.++..... ..
T Consensus 95 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---------~~ 164 (547)
T PRK06087 95 LKVGAVSVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQNQ-LPQLQQIVGVDKLAPA---------TS 164 (547)
T ss_pred HHcCcEEeccchhcCHHHHHHHHHhcCCeEEEEecccccccHHHHHHHHHhh-CCCCcEEEEeCCcCCC---------cC
Confidence 99999999999999999999999999999999976421 222222121 1344455555543211 01
Q ss_pred EeeHHHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChH
Q 010568 199 VYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLA 278 (507)
Q Consensus 199 ~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~ 278 (507)
...+.++....... ........+++++|+|||||||.||+|.++|.+++.....+... .++..+|++++.+|++
T Consensus 165 ~~~~~~~~~~~~~~-~~~~~~~~~d~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~-----~~~~~~d~~l~~~pl~ 238 (547)
T PRK06087 165 SLSLSQIIADYEPL-TTAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCAR-----LNLTWQDVFMMPAPLG 238 (547)
T ss_pred ccCHHHHhccCCcc-cCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHh-----cCCCCCCeEEEecchH
Confidence 22455554432211 11223467899999999999999999999999998877764433 3678899999999999
Q ss_pred HHHHHHH-HHHHHHcCCEEEEecC-CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhHHh
Q 010568 279 HIFDRAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFH 356 (507)
Q Consensus 279 h~~g~~~-~~~~l~~G~~v~l~~~-~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (507)
|.+++.. ++.+++.|+++++.+. ++..+++.+.++++++++.+|+++..++.......
T Consensus 239 h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~-------------------- 298 (547)
T PRK06087 239 HATGFLHGVTAPFLIGARSVLLDIFTPDACLALLEQQRCTCMLGATPFIYDLLNLLEKQP-------------------- 298 (547)
T ss_pred HHHHHHHHHHHHHhcCCEEEecCCCCHHHHHHHHHHcCCCEEeccHHHHHHHHhccccCC--------------------
Confidence 9999865 6777999999998876 99999999999999999998888777654321100
Q ss_pred hhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhCCcEEeecccccCccceeccCCCC-Cc
Q 010568 357 NLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNE-MS 435 (507)
Q Consensus 357 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~-~~ 435 (507)
...+++|.+++||+++++++.+.+.+. ++++++.||+||++++........ ..
T Consensus 299 -------------------------~~~~~lr~i~~gG~~~~~~~~~~~~~~-~~~l~~~YG~TE~~~~~~~~~~~~~~~ 352 (547)
T PRK06087 299 -------------------------ADLSALRFFLCGGTTIPKKVARECQQR-GIKLLSVYGSTESSPHAVVNLDDPLSR 352 (547)
T ss_pred -------------------------CCCCCeEEEEEcCCCCCHHHHHHHHHc-CCcEEEEecccccCCccccCCCcchhh
Confidence 011379999999999999999888775 899999999999988766544322 12
Q ss_pred cCCcccccccCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhc-ccCceeec-cEEEecC
Q 010568 436 MIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTG-MGVWEQL 507 (507)
Q Consensus 436 ~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~-~dgw~~TG-lg~~d~d 507 (507)
..+++|+|++|+.++|+| +++..++ .|+.|||+++|+.++.||+++++.+...| .+|||+|| ++++|+|
T Consensus 353 ~~~~~G~~~~~~~~~i~d-~~~~~~~--~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~~ 423 (547)
T PRK06087 353 FMHTDGYAAAGVEIKVVD-EARKTLP--PGCEGEEASRGPNVFMGYLDEPELTARALDEEGWYYSGDLCRMDEA 423 (547)
T ss_pred cCCcCCccCCCceEEEEc-CCCCCCc--CCCcceEEEecccccccccCCHHHHHHHhCCCCCcCcCceEEECCC
Confidence 236789999999999999 7776554 55899999999999999999999999888 68999999 9999875
|
|
| >PRK07786 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-49 Score=412.61 Aligned_cols=392 Identities=22% Similarity=0.274 Sum_probs=321.7
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHH
Q 010568 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120 (507)
Q Consensus 41 ~~~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~ 120 (507)
...+|+.+.++++++++||++|+.+. + +.+||.||.++++++|++|.+.|+++|++|+|+++|++++++++
T Consensus 14 ~~~~n~~~~~~~~a~~~~~~~a~~~~---~------~~~ty~~l~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~ 84 (542)
T PRK07786 14 ARRQNWVNQLARHALMQPDAPALRFL---G------NTTTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESV 84 (542)
T ss_pred ccccCHHHHHHHHHHHCCCCeEEEeC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHH
Confidence 34588999999999999999999865 3 35999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCceEe
Q 010568 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVY 200 (507)
Q Consensus 121 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 200 (507)
+||+++|++++|+++..+.+++..+++.++++.+|++......+... ....+..+.++.+++... ....
T Consensus 85 ~a~~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----------~~~~ 153 (542)
T PRK07786 85 LAANMLGAIAVPVNFRLTPPEIAFLVSDCGAHVVVTEAALAPVATAV-RDIVPLLSTVVVAGGSSD----------DSVL 153 (542)
T ss_pred HHHHHcCeEEEEcCccCCHHHHHHHHHhCCCcEEEEccchHHHHHHh-hhccCccceEEEecCCCc----------cccc
Confidence 99999999999999999999999999999999999988765544332 222255566666553211 1234
Q ss_pred eHHHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccC-CCCcEEEEecChHH
Q 010568 201 SWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKL-TSEDVYVSYLPLAH 279 (507)
Q Consensus 201 ~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~-~~~d~~l~~~pl~h 279 (507)
+++++....... ........+++++++|||||||.||+|.++|.++...+......+ ++ ...+++++..|++|
T Consensus 154 ~~~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~p~~~ 227 (542)
T PRK07786 154 GYEDLLAEAGPA-HAPVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTN-----GADINSDVGFVGVPLFH 227 (542)
T ss_pred CHHHHhhccCCC-CCCCCCCCCCeEEEEeCCCCCccchhhhhhHHHHHHHHHHHHHhc-----CCCCCCceEEEecchHH
Confidence 566665443221 122334567899999999999999999999999988777644333 44 56789999999999
Q ss_pred HHHHHHHHHHHHcCCEEEEecC---CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhHHh
Q 010568 280 IFDRAIEEVFISNGAAIGFWRG---DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFH 356 (507)
Q Consensus 280 ~~g~~~~~~~l~~G~~v~l~~~---~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (507)
.+|+..++.++..|+++++.+. ++..+++.++++++|+++++|+++..++.......
T Consensus 228 ~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~-------------------- 287 (542)
T PRK07786 228 IAGIGSMLPGLLLGAPTVIYPLGAFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQARP-------------------- 287 (542)
T ss_pred HHHHHHHHHHHHccCEEEEccCCCcCHHHHHHHHHHcCCeEEEehHHHHHHHHhCcccCc--------------------
Confidence 9999888899999999998652 89999999999999999999999999865211100
Q ss_pred hhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhh-CCcEEeecccccCccceeccCCCC-C
Q 010568 357 NLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVSLPNE-M 434 (507)
Q Consensus 357 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~-~ 434 (507)
. ..++|.+++||+++++++.+.+++.+ +.++++.||+||++.+.+...... .
T Consensus 288 ---------------~-----------~~~lr~i~~gg~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~ 341 (542)
T PRK07786 288 ---------------R-----------DLALRVLSWGAAPASDTLLRQMAATFPEAQILAAFGQTEMSPVTCMLLGEDAI 341 (542)
T ss_pred ---------------c-----------CcceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeecccccccceEecCccccc
Confidence 0 02689999999999999999999988 789999999999987655443322 2
Q ss_pred ccCCcccccccCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhcccCceeec-cEEEecC
Q 010568 435 SMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG-MGVWEQL 507 (507)
Q Consensus 435 ~~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~dgw~~TG-lg~~d~d 507 (507)
...+++|+|+||+.++|+| +++..++ .|+.|||+++|+.++.||+++++.++..|.+|||+|| ++++|+|
T Consensus 342 ~~~~~~G~~~~~~~~~i~d-~~~~~~~--~g~~Gel~v~g~~~~~gy~~~~~~~~~~f~~~~~~TGDl~~~~~~ 412 (542)
T PRK07786 342 RKLGSVGKVIPTVAARVVD-ENMNDVP--VGEVGEIVYRAPTLMSGYWNNPEATAEAFAGGWFHSGDLVRQDEE 412 (542)
T ss_pred ccCCCccccCCCceEEEEC-CCCCCCc--CCCceEEEEEChhhhhhhcCCHHHHHHHhhCCcccccceEEEcCC
Confidence 3457899999999999999 7776554 4589999999999999999999999999999999999 9999875
|
|
| >PRK07008 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-49 Score=410.80 Aligned_cols=400 Identities=19% Similarity=0.267 Sum_probs=315.1
Q ss_pred CCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHHHHH
Q 010568 44 ESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEAC 123 (507)
Q Consensus 44 ~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~ 123 (507)
.++.++|++++..+|++.++.+. . .+.++.+||.||.++++++|++|.+.|+++||+|+++++|+++++++++||
T Consensus 10 ~~~~~~l~~~~~~~~~~~~~~~~---~--~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~~d~v~i~~~~~~~~~~~~la~ 84 (539)
T PRK07008 10 LLISSLIAHAARHAGDTEIVSRR---V--EGDIHRYTYRDCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYYGV 84 (539)
T ss_pred CCHHHHHHHHHhhCCCceEEEee---c--cCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHH
Confidence 57999999999999998887643 1 223467999999999999999999999999999999999999999999999
Q ss_pred HhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCceEeeHH
Q 010568 124 NALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWD 203 (507)
Q Consensus 124 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (507)
+++|++++|++|..+.+++..+++.+++++++++.+....+.+..... ..++.++.+...... ........+++
T Consensus 85 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 158 (539)
T PRK07008 85 SGSGAVCHTINPRLFPEQIAYIVNHAEDRYVLFDLTFLPLVDALAPQC-PNVKGWVAMTDAAHL-----PAGSTPLLCYE 158 (539)
T ss_pred HhcCcEEeecccccCHHHHHHHHhccCCcEEEEcchhHHHHHHHHhhC-CCceEEEEEccCCcc-----ccCCcccccHH
Confidence 999999999999999999999999999999999987665444433222 445555544432110 00112345677
Q ss_pred HHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHH
Q 010568 204 EFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDR 283 (507)
Q Consensus 204 ~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~ 283 (507)
++...... ........++++++++|||||||.||+|++||.+++....... .....++..+|++++..|++|..++
T Consensus 159 ~l~~~~~~-~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~---~~~~~~~~~~d~~l~~~p~~h~~~~ 234 (539)
T PRK07008 159 TLVGAQDG-DYDWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAA---LPDAMGLSARDAVLPVVPMFHVNAW 234 (539)
T ss_pred HHhcccCC-CcCcccCCcccceEEEECCCCCCCCcEEEEecHHHHHHHHHhh---cccccCCCCCceEEecCchHHhhhH
Confidence 76544322 1223345678899999999999999999999999865432211 1123467889999999999998888
Q ss_pred HHHHHHHHcCCEEEEecC--CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhHHhhhhcC
Q 010568 284 AIEEVFISNGAAIGFWRG--DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKG 361 (507)
Q Consensus 284 ~~~~~~l~~G~~v~l~~~--~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 361 (507)
...+.++..|+++++.+. ++..+++.++++++|++.++|+++..+++......
T Consensus 235 ~~~~~~l~~G~~~~~~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~------------------------- 289 (539)
T PRK07008 235 GLPYSAPLTGAKLVLPGPDLDGKSLYELIEAERVTFSAGVPTVWLGLLNHMREAG------------------------- 289 (539)
T ss_pred HHHHHHHhcCceEEEecCCcCHHHHHHHHHHcCCEEEEechHHHHHHHhcccccC-------------------------
Confidence 777888999999998754 89999999999999999999999998865321110
Q ss_pred CCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhCCcEEeecccccCccceeccCCCC--------
Q 010568 362 HKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNE-------- 433 (507)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~-------- 433 (507)
.++ +++|.++++|+++++++.+.+.+.++.++++.||+||++..++.+....
T Consensus 290 ------------~~~--------~~l~~~~~~G~~l~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~ 349 (539)
T PRK07008 290 ------------LRF--------STLRRTVIGGSACPPAMIRTFEDEYGVEVIHAWGMTEMSPLGTLCKLKWKHSQLPLD 349 (539)
T ss_pred ------------CCc--------ccceEEEEcCCCCCHHHHHHHHHHhCCceecccccccccccceecccccccccCCch
Confidence 001 3799999999999999999999889999999999999987655432111
Q ss_pred --CccCCcccccccCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhcccCceeec-cEEEecC
Q 010568 434 --MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG-MGVWEQL 507 (507)
Q Consensus 434 --~~~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~dgw~~TG-lg~~d~d 507 (507)
.....++|+|+||++++|+| +++..++.+.++.|||+++|+.++.||+++++ ..+.+|||+|| +|++|+|
T Consensus 350 ~~~~~~~~~G~p~pg~~~~i~d-~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~---~~~~~g~~~TGD~~~~~~d 422 (539)
T PRK07008 350 EQRKLLEKQGRVIYGVDMKIVG-DDGRELPWDGKAFGDLQVRGPWVIDRYFRGDA---SPLVDGWFPTGDVATIDAD 422 (539)
T ss_pred hhhhhcccCCccccceEEEEEC-CCCCccCCCCCcceEEEEeCCccchhhcCChh---hhhcCCCcccCceEEEcCC
Confidence 11236799999999999999 88877766555789999999999999999983 44568999999 9999976
|
|
| >PRK07470 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-49 Score=411.11 Aligned_cols=391 Identities=21% Similarity=0.277 Sum_probs=311.5
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHHHH
Q 010568 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (507)
Q Consensus 43 ~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (507)
..|+.++|.+.++++||++|+++. + +.+||.||.++++++|+.|++.|+++||+|+|+++|+++++++++|
T Consensus 6 ~~~~~~~~~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA 76 (528)
T PRK07470 6 VMNLAHFLRQAARRFPDRIALVWG---D------RSWTWREIDARVDALAAALAARGVRKGDRILVHSRNCNQMFESMFA 76 (528)
T ss_pred CCCHHHHHHHHHHHCCCceEEEEC---C------ccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 467999999999999999999864 3 4699999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCceEeeH
Q 010568 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSW 202 (507)
Q Consensus 123 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 202 (507)
|+++|++++++++.++.+++.++++.++++.+|++.+........... ......++.++... ....+
T Consensus 77 ~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~------------~~~~~ 143 (528)
T PRK07470 77 AFRLGAVWVPTNFRQTPDEVAYLAEASGARAMICHADFPEHAAAVRAA-SPDLTHVVAIGGAR------------AGLDY 143 (528)
T ss_pred HHhCCeEEEecCccCCHHHHHHHHHhcCceEEEEcchhHHHHHHHHhh-CCcCceEEEeCCCc------------ccccH
Confidence 999999999999999999999999999999999998754433322211 13344555544321 12355
Q ss_pred HHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHH
Q 010568 203 DEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282 (507)
Q Consensus 203 ~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g 282 (507)
+++...............++++++++|||||||.||+|.++|.++...+......+ ..+....|+++..+|++|.++
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~ 220 (528)
T PRK07470 144 EALVARHLGARVANAAVDHDDPCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLADL---MPGTTEQDASLVVAPLSHGAG 220 (528)
T ss_pred HHHHhcCCCCCCCcccCCCCCeEEEEeCCCCCCCCcEEEEehhhHHHHHHHHHHHh---ccCCCcccEEEEeccchhHHH
Confidence 66554432222223345678999999999999999999999999976554422211 124567899999999999999
Q ss_pred HHHHHHHHHcCCEEEEecC---CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhHHhhhh
Q 010568 283 RAIEEVFISNGAAIGFWRG---DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLK 359 (507)
Q Consensus 283 ~~~~~~~l~~G~~v~l~~~---~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 359 (507)
+..++ .++.|+++++.+. ++..+++.++++++|++.++|++++.+++....
T Consensus 221 ~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~------------------------- 274 (528)
T PRK07470 221 IHQLC-QVARGAATVLLPSERFDPAEVWALVERHRVTNLFTVPTILKMLVEHPAV------------------------- 274 (528)
T ss_pred HHHHH-HHhcCceEEEecccCcCHHHHHHHHHhcCCeEEechHHHHHHHHhCcCc-------------------------
Confidence 87554 5677777766642 899999999999999999999999987542100
Q ss_pred cCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhCCcEEeecccccCccceeccCCC-------
Q 010568 360 KGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPN------- 432 (507)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~------- 432 (507)
...++ +++|.+++||+++++.+.+.+.+.++.++++.||+||+++.+......
T Consensus 275 ------------~~~~~--------~~lr~~~~gG~~l~~~~~~~~~~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~ 334 (528)
T PRK07470 275 ------------DRYDH--------SSLRYVIYAGAPMYRADQKRALAKLGKVLVQYFGLGEVTGNITVLPPALHDAEDG 334 (528)
T ss_pred ------------CCCCC--------cceEEEEEcCCCCCHHHHHHHHHHhCcHHHHhCCCcccCCceeecchhhcccccc
Confidence 00011 379999999999999999999888899999999999998766544321
Q ss_pred CCccCCcccccccCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhcccCceeec-cEEEecC
Q 010568 433 EMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG-MGVWEQL 507 (507)
Q Consensus 433 ~~~~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~dgw~~TG-lg~~d~d 507 (507)
.....+++|+|++|++++|+| +++..++ .|+.|||+++|+.++.||+++++.++..|.+|||+|| +|++|+|
T Consensus 335 ~~~~~~~~G~~~~g~~~~i~d-~~~~~~~--~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~TGDl~~~~~~ 407 (528)
T PRK07470 335 PDARIGTCGFERTGMEVQIQD-DEGRELP--PGETGEICVIGPAVFAGYYNNPEANAKAFRDGWFRTGDLGHLDAR 407 (528)
T ss_pred ccceeeccCcccCCcEEEEEC-CCCCCCC--CCCceEEEEeCCccchhhcCCHHHHHhhhcCCcEecceeEEEccC
Confidence 112347899999999999999 7776554 5589999999999999999999999999999999999 9999875
|
|
| >PRK07769 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-49 Score=419.24 Aligned_cols=408 Identities=16% Similarity=0.155 Sum_probs=306.7
Q ss_pred ceeecCccCCCCCCCCCCCCCHHHHHHHHHHhCCCCCceeeEeeccC---cCCceEEEeHHHHHHHHHHHHHHHHHCCCC
Q 010568 25 PVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDG---KAGKYVWKTYKEVYDLVIKVVNAIRTCGVE 101 (507)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~tl~~~l~~~~~~~pd~~a~~~~~~~~~---~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~ 101 (507)
|.|.+....+.... ++...|+.++|+++++.+||++|+++. +. ..+.++.+||+||.++++++|++|.+. ++
T Consensus 3 ~~~~~~~~~~~~~~-~~~~~~l~~~l~~~a~~~~~~~a~~~~---~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~-~~ 77 (631)
T PRK07769 3 MAFHNPFDVNGKIR-FPPNTNLVRHVERWAKVRGDKLAYRFL---DFSTERDGVARDLTWSQFGARNRAVGARLQQV-TK 77 (631)
T ss_pred cccCCccccccccc-ccccCCHHHHHHHHHHhCCCCeEEEEe---ccCCCCCCceeEeeHHHHHHHHHHHHHHHHHh-cC
Confidence 45555555555543 345579999999999999999999874 31 223456899999999999999999987 89
Q ss_pred CCCEEEEEeCCchhhHHHHHHHHhcCCEEeec-cCCCC--hHHHHHHHhhcCccEEEecCCChhHHhhcCCCCC-CCccE
Q 010568 102 ERGKCGIYGVNCPEWIIGMEACNALGLHCVPL-YDTLG--AGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTT-EHLKT 177 (507)
Q Consensus 102 ~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l-~~~~~--~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~ 177 (507)
+||+|+|+++|++++++++|||+++|++++|+ ++..+ .+++.++++.++++++|++.+....+.+...... .....
T Consensus 78 ~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~ 157 (631)
T PRK07769 78 PGDRVAILAPQNLDYLIAFFGALYAGRIAVPLFDPAEPGHVGRLHAVLDDCTPSAILTTTDSAEGVRKFFRARPAKERPR 157 (631)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCEEEeeCCCCccchHHHHHHHHHhCCCCEEEEChHHHHHHHHHHhhccccccce
Confidence 99999999999999999999999999999999 45554 5789999999999999998765544333221110 11122
Q ss_pred EEEecCCChhhHHHHhhcCceEeeHHHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhh
Q 010568 178 IVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCL 257 (507)
Q Consensus 178 v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~ 257 (507)
++.++.... .. ..........++++++|+|||||||.||+|+++|.++...+..+...
T Consensus 158 ~~~~~~~~~------------------~~----~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~ 215 (631)
T PRK07769 158 VIAVDAVPD------------------EV----GATWVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDA 215 (631)
T ss_pred EEEcccccc------------------cc----ccccCCCCCCCCCeEEEEeCCCCCCCCcEEEEcHHHHHHHHHHHHHH
Confidence 333221100 00 00111123457899999999999999999999999999887775443
Q ss_pred hhhccccCCCCcEEEEecChHHHHHHHHHHHHHHcCCEEEEecC-----CHHHHHHHhhhhCC---eEEecCcHHHHHHH
Q 010568 258 LESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRG-----DVKLLLEDIGELKP---TIFCAVPRVLDRIY 329 (507)
Q Consensus 258 ~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~v~l~~~-----~~~~~~~~i~~~~v---t~l~~~P~~l~~l~ 329 (507)
+ ++..++++++.+|++|.+|+...+.+++.|+++++.+. ++..+++.+.++++ +++.++|.++..++
T Consensus 216 ~-----~~~~~d~~l~~~Pl~h~~gl~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~l~ 290 (631)
T PRK07769 216 L-----EGQEGDRGVSWLPFFHDMGLITVLLPALLGHYITFMSPAAFVRRPGRWIRELARKPGGTGGTFSAAPNFAFEHA 290 (631)
T ss_pred c-----CCCCcceEEEeCCCcCchhhHHHHHHHhhCCeEEEEChHHHHhCHHHHHHHHHhhccccCceEeeCCchHHHHH
Confidence 3 67889999999999999999887778888999888742 78889999999886 78999999887764
Q ss_pred HHHHHhhhccchhHHHHHHHHHHhHHhhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhh
Q 010568 330 SGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA 409 (507)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~ 409 (507)
....... . .....++ +++|.+++||+++++++.+.|.+.+
T Consensus 291 ~~~~~~~-------------------------------~-~~~~~~l--------~~lr~~~~gg~~l~~~~~~~~~~~~ 330 (631)
T PRK07769 291 AARGLPK-------------------------------D-GEPPLDL--------SNVKGLLNGSEPVSPASMRKFNEAF 330 (631)
T ss_pred Hhhccch-------------------------------h-cccCcch--------hheeeEEeccCCCCHHHHHHHHHHH
Confidence 3100000 0 0000112 3799999999999999999999887
Q ss_pred ---C---CcEEeecccccCccceeccCCCCC--------------------------ccCCcccccccCceEEEeecCCC
Q 010568 410 ---C---AHVLQGYGLTETCAGTFVSLPNEM--------------------------SMIGTVGPPVPNVDVCLESVPEM 457 (507)
Q Consensus 410 ---~---~~v~~~YG~tE~~~~~~~~~~~~~--------------------------~~~~s~G~p~pg~~i~ivd~~~~ 457 (507)
| ..+++.||+||++.+++....... ....++|+|+++++++|+|.+++
T Consensus 331 ~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~G~~~~~~~~~ivd~~~g 410 (631)
T PRK07769 331 APYGLPPTAIKPSYGMAEATLFVSTTPMDEEPTVIYVDRDELNAGRFVEVPADAPNAVAQVSAGKVGVSEWAVIVDPETA 410 (631)
T ss_pred hhcCCChhhcccccchhhheeEEeccCCCCCceEEEEcHHHHhCCCeEecCCCCCCceeEEeCCCcCCCcEEEEEcCCCC
Confidence 3 359999999999876654432210 01247999999999999983344
Q ss_pred ccccCCCCCCceEEEecCCccccccCChhhhhhhcc------------------cCceeec-cEEEec
Q 010568 458 EYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV------------------DGWFHTG-MGVWEQ 506 (507)
Q Consensus 458 ~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~------------------dgw~~TG-lg~~d~ 506 (507)
..+ +.|+.|||+|+||+++.|||++++.+++.|. +|||+|| +|++++
T Consensus 411 ~~~--~~ge~GEl~v~gp~v~~GY~~~~~~t~~~f~~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~~d 476 (631)
T PRK07769 411 SEL--PDGQIGEIWLHGNNIGTGYWGKPEETAATFQNILKSRLSESHAEGAPDDALWVRTGDYGVYFD 476 (631)
T ss_pred cCC--CCCCEEEEEecCCCccccccCChhHHHHHHhhhcccccccccccCcccCCCeeeccccccEEC
Confidence 444 4569999999999999999999999999883 3899999 999863
|
|
| >PRK08316 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-48 Score=408.01 Aligned_cols=394 Identities=23% Similarity=0.307 Sum_probs=318.7
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHHHH
Q 010568 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (507)
Q Consensus 43 ~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (507)
..|+.++|.+.++++||++|+++. + +.+||.||.+++.++|+.|.+.|+++||+|+++++|+++++++++|
T Consensus 10 ~~~l~~~l~~~a~~~~~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~gi~~~~~V~l~~~~~~~~~~~~~a 80 (523)
T PRK08316 10 RQTIGDILRRSARRYPDKTALVFG---D------RSWTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWLA 80 (523)
T ss_pred CCCHHHHHHHHHHHCCCCeEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence 578999999999999999999865 3 4699999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCceEeeH
Q 010568 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSW 202 (507)
Q Consensus 123 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 202 (507)
|+++|++++|+++.++.+++..+++.++++++|++.+....+.+...... ...+........ .........+
T Consensus 81 ~~~~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~------~~~~~~~~~~ 152 (523)
T PRK08316 81 CARAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPALAPTAEAALALLP--VDTLILSLVLGG------REAPGGWLDF 152 (523)
T ss_pred HHhcCcEEEecccccCHHHHHHHHHhCCCCEEEEccchHHHHHHHhhhcC--ccceeeeecccc------cccccchhhH
Confidence 99999999999999999999999999999999999887666554432221 111111110000 0001123445
Q ss_pred HHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHH
Q 010568 203 DEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282 (507)
Q Consensus 203 ~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g 282 (507)
+++...... .........+++++++|||||||.||+|.++|.+++......... .++..++++++.+|++|..+
T Consensus 153 ~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~-----~~~~~~~~~~~~~p~~h~~g 226 (523)
T PRK08316 153 ADWAEAGSV-AEPDVELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVA-----GDMSADDIPLHALPLYHCAQ 226 (523)
T ss_pred HHHHhcCCC-ccCccCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHH-----hCCCCCceEEEccCCchhhh
Confidence 555443321 112334567899999999999999999999999998887764333 36889999999999999999
Q ss_pred HHH-HHHHHHcCCEEEEecC-CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhHHhhhhc
Q 010568 283 RAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKK 360 (507)
Q Consensus 283 ~~~-~~~~l~~G~~v~l~~~-~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 360 (507)
+.. +..++..|+++++.+. ++..+++.++++++|+++++|.++..+++....
T Consensus 227 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-------------------------- 280 (523)
T PRK08316 227 LDVFLGPYLYVGATNVILDAPDPELILRTIEAERITSFFAPPTVWISLLRHPDF-------------------------- 280 (523)
T ss_pred HHHHHHHHHhcCceEEEecCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHcCccc--------------------------
Confidence 866 5566899999999865 999999999999999999999999887642110
Q ss_pred CCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhh-CCcEEeecccccCccceeccCCCC-CccCC
Q 010568 361 GHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVSLPNE-MSMIG 438 (507)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~-~~~~~ 438 (507)
...++ +++|.+++||++++.++.+.+++.+ +.++++.||+||++.+++...... ....+
T Consensus 281 -----------~~~~~--------~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~ 341 (523)
T PRK08316 281 -----------DTRDL--------SSLRKGYYGASIMPVEVLKELRERLPGLRFYNCYGQTEIAPLATVLGPEEHLRRPG 341 (523)
T ss_pred -----------ccCCc--------ccceEEEEcCCcCCHHHHHHHHHHcCCCceeeeecccccCccccccCccccccccC
Confidence 00111 3789999999999999999999987 789999999999988776654432 23357
Q ss_pred cccccccCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhcccCceeec-cEEEecC
Q 010568 439 TVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG-MGVWEQL 507 (507)
Q Consensus 439 s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~dgw~~TG-lg~~d~d 507 (507)
++|+|+++++++|+| +++..++. |+.|||+++|+.++.||+++++.+.+.|.+|||+|| +|++|+|
T Consensus 342 ~~G~~~~~~~~~i~~-~~~~~~~~--g~~Gei~v~~~~~~~~y~~~~~~~~~~~~~~~~~TGDl~~~~~~ 408 (523)
T PRK08316 342 SAGRPVLNVETRVVD-DDGNDVAP--GEVGEIVHRSPQLMLGYWDDPEKTAEAFRGGWFHSGDLGVMDEE 408 (523)
T ss_pred CcccCCCCcEEEEEc-CCCCCCCC--CCcceEEEECCchhhhhcCCHHHHHHHhhCCCeeccceEEEcCC
Confidence 999999999999999 77765555 589999999999999999999999999999999999 9999875
|
|
| >PRK08315 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-48 Score=409.99 Aligned_cols=403 Identities=24% Similarity=0.357 Sum_probs=317.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCch
Q 010568 35 GFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCP 114 (507)
Q Consensus 35 ~~~~~~~~~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~ 114 (507)
+.........|+.++|.+.++++||++|+++. ++. +.+||.||.++++++|+.|.+.|+++||+|+++++|++
T Consensus 7 ~~~~~~~~~~~l~~~l~~~~~~~~~~~ai~~~---~~~----~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~ 79 (559)
T PRK08315 7 GPTDVPLLEQTIGQLLDRTAARYPDREALVYR---DQG----LRWTYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVP 79 (559)
T ss_pred CCCcCChhhccHHHHHHHHHHHCCCCeEEEEc---CCC----eEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCh
Confidence 33344455678999999999999999999875 443 57999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChh-----HHhhcCCCC------------CCCccE
Q 010568 115 EWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIP-----EMLKTFPKT------------TEHLKT 177 (507)
Q Consensus 115 ~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-----~~~~~~~~~------------~~~~~~ 177 (507)
++++++|||+++|++++|++|..+.+++..+++.++++.+|++..... .+.+..... .+..+.
T Consensus 80 ~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (559)
T PRK08315 80 EWVLTQFATAKIGAILVTINPAYRLSELEYALNQSGCKALIAADGFKDSDYVAMLYELAPELATCEPGQLQSARLPELRR 159 (559)
T ss_pred HHHHHHHHHHHhCeEEEecCccCCHHHHHHHHHhcCCCEEEEeccccccchHHHHHHhhhhhhcccccccccccCCCcee
Confidence 999999999999999999999999999999999999999999875421 111111100 022334
Q ss_pred EEEecCCChhhHHHHhhcCceEeeHHHHHhccccC-----CCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHh
Q 010568 178 IVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENK-----QFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIA 252 (507)
Q Consensus 178 v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~ 252 (507)
++.++.... .....++++....... .........+++++++|||||||.||+|.++|.+++.++.
T Consensus 160 ~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~ 229 (559)
T PRK08315 160 VIFLGDEKH----------PGMLNFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTHRNILNNGY 229 (559)
T ss_pred EEeecccCC----------cccccHHHHHhhccccccccccchhccCCCCCcEEEEEcCCCCCCcceEEeeHHHHHHHHH
Confidence 444432211 1234555554432110 1112234568899999999999999999999999998887
Q ss_pred hhhhhhhhccccCCCCcEEEEecChHHHHHHHH-HHHHHHcCCEEEEecC--CHHHHHHHhhhhCCeEEecCcHHHHHHH
Q 010568 253 GVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG--DVKLLLEDIGELKPTIFCAVPRVLDRIY 329 (507)
Q Consensus 253 ~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~v~l~~~--~~~~~~~~i~~~~vt~l~~~P~~l~~l~ 329 (507)
.+...+ ++..+|+++..+|++|.+++.. ++.++..|+++++... ++..+++.++++++|+++++|+++..++
T Consensus 230 ~~~~~~-----~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~~~ 304 (559)
T PRK08315 230 FIGEAM-----KLTEEDRLCIPVPLYHCFGMVLGNLACVTHGATMVYPGEGFDPLATLAAVEEERCTALYGVPTMFIAEL 304 (559)
T ss_pred HHHHhc-----CCCCCceEEEecCcHHHHHHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHcCCeEEecchHHHHHHH
Confidence 754433 7889999999999999999876 6778999999986543 8999999999999999999999998775
Q ss_pred HHHHHhhhccchhHHHHHHHHHHhHHhhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhh
Q 010568 330 SGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA 409 (507)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~ 409 (507)
...... ..++ +++|.+++||++++.++.+.+.+.+
T Consensus 305 ~~~~~~-------------------------------------~~~~--------~~lr~~~~~G~~~~~~~~~~~~~~~ 339 (559)
T PRK08315 305 DHPDFA-------------------------------------RFDL--------SSLRTGIMAGSPCPIEVMKRVIDKM 339 (559)
T ss_pred hCcccC-------------------------------------CCCc--------hhhheeEecCCCCCHHHHHHHHHHc
Confidence 421100 0011 3789999999999999999999888
Q ss_pred CC-cEEeecccccCccceeccCCCC--CccCCcccccccCceEEEeecCC-CccccCCCCCCceEEEecCCccccccCCh
Q 010568 410 CA-HVLQGYGLTETCAGTFVSLPNE--MSMIGTVGPPVPNVDVCLESVPE-MEYDALSSTPRGEVCVKGSTVFSGYYKRE 485 (507)
Q Consensus 410 ~~-~v~~~YG~tE~~~~~~~~~~~~--~~~~~s~G~p~pg~~i~ivd~~~-~~~~~~~~g~~Gel~v~g~~v~~gY~~~~ 485 (507)
+. ++++.||+||++.+++...... .....++|+|+||++++|+| ++ +..++ .|+.|||+|+|+.++.||++++
T Consensus 340 ~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d-~~~~~~~~--~g~~GEl~v~g~~~~~gy~~~~ 416 (559)
T PRK08315 340 HMSEVTIAYGMTETSPVSTQTRTDDPLEKRVTTVGRALPHLEVKIVD-PETGETVP--RGEQGELCTRGYSVMKGYWNDP 416 (559)
T ss_pred CCcceeEEEcccccccceeecCcccchhhccCCCCccCCCcEEEEEc-CccCCcCC--CCCceEEEEECchhhhhhcCCh
Confidence 65 4999999999988766544332 23357899999999999999 66 65544 5699999999999999999999
Q ss_pred hhhhhhc-ccCceeec-cEEEecC
Q 010568 486 DLTKEVM-VDGWFHTG-MGVWEQL 507 (507)
Q Consensus 486 ~~~~~~~-~dgw~~TG-lg~~d~d 507 (507)
+.++..| .++||+|| +|++|+|
T Consensus 417 ~~~~~~~~~~~~~~TGD~~~~~~d 440 (559)
T PRK08315 417 EKTAEAIDADGWMHTGDLAVMDEE 440 (559)
T ss_pred hHHhhcCCCCCCEEccceEEEcCC
Confidence 9999888 78999999 9999865
|
|
| >PRK12492 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-48 Score=410.15 Aligned_cols=406 Identities=20% Similarity=0.313 Sum_probs=308.3
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHC-CCCCCCEEEEEeCCchhhHHHHH
Q 010568 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTC-GVEERGKCGIYGVNCPEWIIGME 121 (507)
Q Consensus 43 ~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~-gv~~gd~V~i~~~n~~~~~~~~l 121 (507)
..++.++|.++++++|+++|++.. + +.+||.||.++++++|++|.+. |+++||+|+++++|++++++++|
T Consensus 23 ~~~~~~~l~~~~~~~p~~~a~~~~----~-----~~~Ty~~l~~~~~~~a~~L~~~~gi~~gd~V~i~~~n~~e~~~~~l 93 (562)
T PRK12492 23 YKSVVEVFERSCKKFADRPAFSNL----G-----VTLSYAELERHSAAFAAYLQQHTDLVPGDRIAVQMPNVLQYPIAVF 93 (562)
T ss_pred cCcHHHHHHHHHHhCCCCeeEecC----C-----ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHH
Confidence 468999999999999999998753 2 4699999999999999999985 99999999999999999999999
Q ss_pred HHHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEec--CCChhh-----------
Q 010568 122 ACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFS--KVKPEQ----------- 188 (507)
Q Consensus 122 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~----------- 188 (507)
||+++|++++++++..+.+++.++++.++++++|++............. .....++... +.....
T Consensus 94 a~~~~G~v~v~~~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (562)
T PRK12492 94 GALRAGLIVVNTNPLYTAREMRHQFKDSGARALVYLNMFGKLVQEVLPD--TGIEYLIEAKMGDLLPAAKGWLVNTVVDK 171 (562)
T ss_pred HHHHcCeEEeccCccCCHHHHHHHHhccCceEEEeccccchHHHHhhhc--cCceEEEeechhhccccccchhccccccc
Confidence 9999999999999999999999999999999999987544333222111 1111111110 000000
Q ss_pred -HHHHhh-cCceEeeHHHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccc---
Q 010568 189 -REEIEK-YGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNE--- 263 (507)
Q Consensus 189 -~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~--- 263 (507)
...... .......|+++................+++++|+|||||||.||+|+++|.++...+......+.....
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~ 251 (562)
T PRK12492 172 VKKMVPAYHLPQAVPFKQALRQGRGLSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDGQ 251 (562)
T ss_pred ccccccccCCcccccHHHHHhccCCCCCCCCCCCcCCeEEEEeCCCCCCCCceEEEechhHHHHHHHHHHHHhccccccc
Confidence 000000 001224566655443222222234567899999999999999999999999998777654433211000
Q ss_pred -cCC-CCcEEEEecChHHHHHHHH-HHHHHHcCCEEEEec--CCHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhc
Q 010568 264 -KLT-SEDVYVSYLPLAHIFDRAI-EEVFISNGAAIGFWR--GDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISS 338 (507)
Q Consensus 264 -~~~-~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~v~l~~--~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~ 338 (507)
... ..+++++.+|++|.+++.. ++..+..|..+++.. .++..+++.++++++|+++++|+++..++....
T Consensus 252 ~~~~~~~~~~~~~~pl~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~----- 326 (562)
T PRK12492 252 PLMKEGQEVMIAPLPLYHIYAFTANCMCMMVSGNHNVLITNPRDIPGFIKELGKWRFSALLGLNTLFVALMDHPG----- 326 (562)
T ss_pred ccccCCCeEEEEecchHHHHHHHHHHHHHhhcCceEEEecCCcCHHHHHHHHHHhCCceeeCcHHHHHHHHhCcC-----
Confidence 012 2457889999999999865 555678888776653 288999999999999999999999988764210
Q ss_pred cchhHHHHHHHHHHhHHhhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhCCcEEeecc
Q 010568 339 GGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYG 418 (507)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~~~v~~~YG 418 (507)
....++ +++|.+++||+++++.+.+.+++.+++++++.||
T Consensus 327 --------------------------------~~~~~~--------~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG 366 (562)
T PRK12492 327 --------------------------------FKDLDF--------SALKLTNSGGTALVKATAERWEQLTGCTIVEGYG 366 (562)
T ss_pred --------------------------------cccccc--------cceeEEEeccccCCHHHHHHHHHHhCCceeeccC
Confidence 000111 3799999999999999999999988999999999
Q ss_pred cccCccceeccCCCCCccCCcccccccCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhc-ccCce
Q 010568 419 LTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWF 497 (507)
Q Consensus 419 ~tE~~~~~~~~~~~~~~~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~-~dgw~ 497 (507)
+||++.+++..........+++|+|+||++++|+| +++..++ .|+.|||+|+|+.++.|||++++.+.+.| .+|||
T Consensus 367 ~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~v~ivd-~~~~~~~--~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~~ 443 (562)
T PRK12492 367 LTETSPVASTNPYGELARLGTVGIPVPGTALKVID-DDGNELP--LGERGELCIKGPQVMKGYWQQPEATAEALDAEGWF 443 (562)
T ss_pred ccccCceeeecCCcccccCCccceecCCCEEEEEC-CCCCCCC--CCCceEEEEeCCccccccccCchhhhhcccCCCce
Confidence 99998877665544434457899999999999999 7776554 46899999999999999999999999999 68999
Q ss_pred eec-cEEEecC
Q 010568 498 HTG-MGVWEQL 507 (507)
Q Consensus 498 ~TG-lg~~d~d 507 (507)
+|| +|++|+|
T Consensus 444 ~TGD~g~~~~~ 454 (562)
T PRK12492 444 KTGDIAVIDPD 454 (562)
T ss_pred ecCcEEEECCC
Confidence 999 9999875
|
|
| >TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-48 Score=405.25 Aligned_cols=392 Identities=21% Similarity=0.271 Sum_probs=319.2
Q ss_pred CHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHHHHHH
Q 010568 45 SCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACN 124 (507)
Q Consensus 45 tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~ 124 (507)
++.++|++.++++|+++|+.+. + +++||+||.+++.++|++|++.|+++||+|+++++|++++++++|||+
T Consensus 1 ~~~~~~~~~~~~~p~~~a~~~~---~------~~~ty~~l~~~v~~~a~~l~~~g~~~~~~V~i~~~n~~~~~~~~lA~~ 71 (515)
T TIGR03098 1 LLHHLLEDAAARLPDATALVHH---D------RTLTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAA 71 (515)
T ss_pred CHHHHHHHHHHHCCCCeEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHH
Confidence 4789999999999999999864 3 469999999999999999999999999999999999999999999999
Q ss_pred hcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCceEeeHHH
Q 010568 125 ALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDE 204 (507)
Q Consensus 125 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (507)
++|++++|+++..+.+++..+++.++++++|++......+....... +.+..++.+++..... ........|++
T Consensus 72 ~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 145 (515)
T TIGR03098 72 LAGGVFVPINPLLKAEQVAHILADCNVRLLVTSSERLDLLHPALPGC-HDLRTLILVGEPAHAS-----EGGGESPSWPK 145 (515)
T ss_pred hcCEEEEeCCCCCCHHHHHHHHHcCCCeEEEEccchhhhhHhhhhcc-cccceEEEecCccccc-----CCccccccHHH
Confidence 99999999999999999999999999999999887665554443332 3445565555432110 01122345666
Q ss_pred HHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHH
Q 010568 205 FLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRA 284 (507)
Q Consensus 205 l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~ 284 (507)
+...... ........+++++++|||||||.||+|.++|.++...+......+ .+..+|++++.+|++|.+++.
T Consensus 146 ~~~~~~~--~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~~~ 218 (515)
T TIGR03098 146 LLALGDA--DPPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYL-----ENRPDDRLLAVLPLSFDYGFN 218 (515)
T ss_pred hhccccc--cccCCCCcCCeEEEEECCCCCCCCceEEEecHHHHHHHHHHHHHh-----CCCcccEEEEECchhhHhHHH
Confidence 6543321 122234567899999999999999999999999998887754433 678899999999999999998
Q ss_pred HHHHHHHcCCEEEEecC-CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhHHhhhhcCCC
Q 010568 285 IEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHK 363 (507)
Q Consensus 285 ~~~~~l~~G~~v~l~~~-~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 363 (507)
.++.++..|+++++.+. ++..+++.++++++|++.++|+++..+.+....
T Consensus 219 ~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~----------------------------- 269 (515)
T TIGR03098 219 QLTTAFYVGATVVLHDYLLPRDVLKALEKHGITGLAAVPPLWAQLAQLDWP----------------------------- 269 (515)
T ss_pred HHHHHHHcCCEEEEcCCCCHHHHHHHHHHcCCceEecChHHHHHHHhcccC-----------------------------
Confidence 88999999999998876 999999999999999999999999887541000
Q ss_pred CCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhh-CCcEEeecccccCccceeccCCCCCccCCcccc
Q 010568 364 HVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGP 442 (507)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~~~~~~s~G~ 442 (507)
. ...+++|.+++||+++++++.+.+++.+ +..+++.||+||++.............++++|+
T Consensus 270 -----~------------~~~~~l~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~vG~ 332 (515)
T TIGR03098 270 -----E------------SAAPSLRYLTNSGGAMPRATLSRLRSFLPNARLFLMYGLTEAFRSTYLPPEEVDRRPDSIGK 332 (515)
T ss_pred -----C------------CCccceEEEEecCCcCCHHHHHHHHHHCCCCeEeeeeccccccceEecccccccCCCCCcce
Confidence 0 0013799999999999999999999988 688999999999987655443333344589999
Q ss_pred cccCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhcc------------cCceeec-cEEEecC
Q 010568 443 PVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV------------DGWFHTG-MGVWEQL 507 (507)
Q Consensus 443 p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~------------dgw~~TG-lg~~d~d 507 (507)
|+||++++|+| +++..++ .|+.|||+++|+.++.|||++++.+...|. ++||+|| +|++|+|
T Consensus 333 ~~~~~~~~i~~-~~~~~~~--~~~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~ 407 (515)
T TIGR03098 333 AIPNAEVLVLR-EDGSECA--PGEEGELVHRGALVAMGYWNDPEKTAERFRPLPPRPGELHLPELAVWSGDTVRRDEE 407 (515)
T ss_pred ecCCCEEEEEC-CCCCCCC--CCCceEEEEcCchhhccccCCchhhhhhhhccCCccccccccccceeccceEEEcCC
Confidence 99999999999 7766554 468999999999999999999998877762 3489999 9999875
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. |
| >PLN03102 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-48 Score=410.27 Aligned_cols=397 Identities=20% Similarity=0.275 Sum_probs=298.1
Q ss_pred CCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHHHHH
Q 010568 44 ESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEAC 123 (507)
Q Consensus 44 ~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~ 123 (507)
.|+.++|.+.++.+||++|+++. + .++||+||.++++++|++|.++|+++||+|+|+++|++++++++|||
T Consensus 14 ~~~~~~l~~~~~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~~a~~L~~~Gl~~gd~Vai~~~n~~e~~~~~la~ 84 (579)
T PLN03102 14 LTPITFLKRASECYPNRTSIIYG---K------TRFTWPQTYDRCCRLAASLISLNITKNDVVSVLAPNTPAMYEMHFAV 84 (579)
T ss_pred ccHHHHHHHHHHhCCCCeEEEEC---C------cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHH
Confidence 57899999999999999999864 3 36999999999999999999999999999999999999999999999
Q ss_pred HhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCC----CCccEEEEecCCChhhHHHHhhcCceE
Q 010568 124 NALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTT----EHLKTIVSFSKVKPEQREEIEKYGLAV 199 (507)
Q Consensus 124 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~~~~~ 199 (507)
+++|++++|++|.++.+++.++++.++++++|++.+....+........ .....++.++...... ......
T Consensus 85 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 159 (579)
T PLN03102 85 PMAGAVLNPINTRLDATSIAAILRHAKPKILFVDRSFEPLAREVLHLLSSEDSNLNLPVIFIHEIDFPK-----RPSSEE 159 (579)
T ss_pred HhcCcEEeeccccCCHHHHHHHHhccCCeEEEEChhhHHHHHHHHhhccccccccCceEEEeccccccc-----CCcccc
Confidence 9999999999999999999999999999999998876654443322110 0112344443221100 000123
Q ss_pred eeHHHHHhccccCCCC----CCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEec
Q 010568 200 YSWDEFLQLGENKQFD----LPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYL 275 (507)
Q Consensus 200 ~~~~~l~~~~~~~~~~----~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~ 275 (507)
.+++++.......... .....++++++|+|||||||.||+|+++|.++....... .....+...+++++.+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~-----~~~~~~~~~~~~l~~~ 234 (579)
T PLN03102 160 LDYECLIQRGEPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSA-----IIGWEMGTCPVYLWTL 234 (579)
T ss_pred cCHHHHHhccCCCCcccccccccCCCCCcEEEEeCCcCCCCCCEEEEecHHHHHHHHHH-----HhhcCCCCCCeEEecC
Confidence 4566665433221111 112356899999999999999999999999975544331 1222456678999999
Q ss_pred ChHHHHHHHHHHHHHHcCCEEEEecC-CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhH
Q 010568 276 PLAHIFDRAIEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYK 354 (507)
Q Consensus 276 pl~h~~g~~~~~~~l~~G~~v~l~~~-~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (507)
|++|..++...+.++..|+++++.+. ++..+++.|+++++|+++++|+++..|.+.......
T Consensus 235 pl~h~~g~~~~~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~----------------- 297 (579)
T PLN03102 235 PMFHCNGWTFTWGTAARGGTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNSLDLS----------------- 297 (579)
T ss_pred ChhhhcchhHHHHHHHhcCcEEeeccCChHHHHHHHHHcCCeEEEeChHHHHHHHhCcccccC-----------------
Confidence 99999998877778888888887765 888999999999999999999999998653111000
Q ss_pred HhhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhCCcEEeecccccCccceeccCCCC-
Q 010568 355 FHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNE- 433 (507)
Q Consensus 355 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~- 433 (507)
. . .+++.+++||+++++.+.+++++ +|.++++.||+||+++.++......
T Consensus 298 -----------------~---~--------~~~~~~~~gg~~~~~~~~~~~~~-~g~~i~~~YG~tE~~~~~~~~~~~~~ 348 (579)
T PLN03102 298 -----------------P---R--------SGPVHVLTGGSPPPAALVKKVQR-LGFQVMHAYGLTEATGPVLFCEWQDE 348 (579)
T ss_pred -----------------C---c--------ccceEEEECCCCCCHHHHHHHHH-cCCeEEeecCccccCccccccccccc
Confidence 0 0 25678899999999999998876 5899999999999986543321100
Q ss_pred ------------CccCCcccccccCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhcccCceeec-
Q 010568 434 ------------MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG- 500 (507)
Q Consensus 434 ------------~~~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~dgw~~TG- 500 (507)
....+..+.++++++ +.|.+.++.++.+.++.|||+|+|+.++.|||++++.+.+.|.+|||+||
T Consensus 349 ~~~~~~~~~~~~~~~~g~~~~~~~~v~--i~~~~~~~~v~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~gw~~TGD 426 (579)
T PLN03102 349 WNRLPENQQMELKARQGVSILGLADVD--VKNKETQESVPRDGKTMGEIVIKGSSIMKGYLKNPKATSEAFKHGWLNTGD 426 (579)
T ss_pred cccCCcccccccccCCCcccccccceE--EeccccccccCCCCCCceEEEEECcchhhhhcCChhhhHhhhccCceecCc
Confidence 011244455555554 44523344455433478999999999999999999999999999999999
Q ss_pred cEEEecC
Q 010568 501 MGVWEQL 507 (507)
Q Consensus 501 lg~~d~d 507 (507)
+|++|+|
T Consensus 427 lg~~d~d 433 (579)
T PLN03102 427 VGVIHPD 433 (579)
T ss_pred eEEEcCC
Confidence 9999976
|
|
| >PRK07059 Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-48 Score=407.23 Aligned_cols=408 Identities=21% Similarity=0.303 Sum_probs=312.8
Q ss_pred CCCCCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHH
Q 010568 40 IPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIG 119 (507)
Q Consensus 40 ~~~~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~ 119 (507)
.+...++.++|.++++++||++|+++. + ..+||.||.++++++|++|.+.|+++||+|+++++|+++++++
T Consensus 19 ~~~~~~i~~~l~~~a~~~p~~~a~~~~---~------~~lTy~~l~~~~~~~a~~L~~~gi~~gd~V~i~~~n~~~~~~~ 89 (557)
T PRK07059 19 ASQYPSLADLLEESFRQYADRPAFICM---G------KAITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVA 89 (557)
T ss_pred CCCCCCHHHHHHHHHHHcCCCceEEEc---C------ceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHH
Confidence 344578999999999999999999865 3 4699999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhh-HH--------
Q 010568 120 MEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQ-RE-------- 190 (507)
Q Consensus 120 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~-------- 190 (507)
+|||+++|++++|++|..+.+++.++++.++++++|+++.....+...... ...+.+++........ ..
T Consensus 90 ~la~~~~G~~~v~v~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (557)
T PRK07059 90 IAAVLRAGYVVVNVNPLYTPRELEHQLKDSGAEAIVVLENFATTVQQVLAK--TAVKHVVVASMGDLLGFKGHIVNFVVR 167 (557)
T ss_pred HHHHHhcCeEEeccCcccCHHHHHHHHHccCceEEEEchhhHHHHHHhhcc--cCCceeEEecccccccccccccccccc
Confidence 999999999999999999999999999999999999987655444333221 2223333221100000 00
Q ss_pred -HH----hhcCceEeeHHHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhcccc-
Q 010568 191 -EI----EKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEK- 264 (507)
Q Consensus 191 -~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~- 264 (507)
.. .........+++++..............++++++++|||||||.||+|.++|.+++.++......+.. ...
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~-~~~~ 246 (557)
T PRK07059 168 RVKKMVPAWSLPGHVRFNDALAEGARQTFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQP-AFEK 246 (557)
T ss_pred cccccccccCCCCcccHHHHhhccCCCCCCCCCCCcCceEEEEeCCCCCCCCcEEEeecHHHHHHHHHHhhhhcc-cccc
Confidence 00 00001223455555443222222334567899999999999999999999999998766543222111 011
Q ss_pred --CCCCcEEEEecChHHHHHHHH-HHHHHHcCCEEEEecC--CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhcc
Q 010568 265 --LTSEDVYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG--DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSG 339 (507)
Q Consensus 265 --~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~v~l~~~--~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~ 339 (507)
......+++.+|++|.+++.. .+.++..|++.++.+. ++..+++.++++++|.+.++|.++..+.....
T Consensus 247 ~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~------ 320 (557)
T PRK07059 247 KPRPDQLNFVCALPLYHIFALTVCGLLGMRTGGRNILIPNPRDIPGFIKELKKYQVHIFPAVNTLYNALLNNPD------ 320 (557)
T ss_pred cCCCCCcEEEEeCCcHHHHHHHHHHHHHHhhcceEEEecCCcCHHHHHHHHHHhCCeeeecCHHHHHHHHcCcC------
Confidence 113457888999999988754 5667888888766653 88999999999999999999999998765210
Q ss_pred chhHHHHHHHHHHhHHhhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhCCcEEeeccc
Q 010568 340 GLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGL 419 (507)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~~~v~~~YG~ 419 (507)
....++ +++|.++.||+++++.+.+.+.+.+++++++.||+
T Consensus 321 -------------------------------~~~~~~--------~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~ 361 (557)
T PRK07059 321 -------------------------------FDKLDF--------SKLIVANGGGMAVQRPVAERWLEMTGCPITEGYGL 361 (557)
T ss_pred -------------------------------cCcCCc--------hhheEEEeccccCCHHHHHHHHHHhCCCeeecccc
Confidence 001111 27899999999999999999999889999999999
Q ss_pred ccCccceeccCCCCCccCCcccccccCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhc-ccCcee
Q 010568 420 TETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFH 498 (507)
Q Consensus 420 tE~~~~~~~~~~~~~~~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~-~dgw~~ 498 (507)
||++.+++.........++++|.|++|++++|+| +++..++ .|+.|||+++|+.++.||+++++.+.+.| .+|||+
T Consensus 362 tE~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d-~~~~~~~--~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~ 438 (557)
T PRK07059 362 SETSPVATCNPVDATEFSGTIGLPLPSTEVSIRD-DDGNDLP--LGEPGEICIRGPQVMAGYWNRPDETAKVMTADGFFR 438 (557)
T ss_pred ccccchhhcCCCCCCCcCCcccCccCCcEEEEEC-CCCCCCC--CCCceEEEEeCCccchhhhcCHHHHhhhcccCCcee
Confidence 9998876655544334457999999999999999 7776554 45899999999999999999999999888 789999
Q ss_pred ec-cEEEecC
Q 010568 499 TG-MGVWEQL 507 (507)
Q Consensus 499 TG-lg~~d~d 507 (507)
|| +|++|+|
T Consensus 439 TGDl~~~~~~ 448 (557)
T PRK07059 439 TGDVGVMDER 448 (557)
T ss_pred cCcEEEEcCC
Confidence 99 9999875
|
|
| >PRK03584 acetoacetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-48 Score=416.67 Aligned_cols=400 Identities=17% Similarity=0.169 Sum_probs=302.4
Q ss_pred CHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHHHHHH
Q 010568 45 SCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACN 124 (507)
Q Consensus 45 tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~ 124 (507)
|+.+.+..+ .+|+++|+++. + ..+..+++||+||.+++.++|+.|+++|+++||+|+|+++|++++++++|||+
T Consensus 87 n~~~~~~~~--~~~~~~Al~~~---~-~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~v~~~lA~~ 160 (655)
T PRK03584 87 NYAENLLRH--RRDDRPAIIFR---G-EDGPRRELSWAELRRQVAALAAALRALGVGPGDRVAAYLPNIPETVVAMLATA 160 (655)
T ss_pred eHHHHhhcc--CCCCCeEEEEE---C-CCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHH
Confidence 455544432 58999999986 3 34456789999999999999999999999999999999999999999999999
Q ss_pred hcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCCh---------hHHhhcCCCCCCCccEEEEecCCChhhHHHHhhc
Q 010568 125 ALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKI---------PEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKY 195 (507)
Q Consensus 125 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 195 (507)
++|++++|++|.++.+++.++++.++++++|+++... ..+.+.... .+.++.++.++...... ....
T Consensus 161 ~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~---~~~~ 236 (655)
T PRK03584 161 SLGAIWSSCSPDFGVQGVLDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAELRAA-LPSLEHVVVVPYLGPAA---AAAA 236 (655)
T ss_pred HcCcEEEeeCCCCCHHHHHHHHHHcCCcEEEEccccccCCcccchHHHHHHHHhc-CCCccEEEEEecCCCcc---cccc
Confidence 9999999999999999999999999999999987532 122222221 24445566554321100 0001
Q ss_pred CceEeeHHHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHH-HhhhhhhhhhccccCCCCcEEEEe
Q 010568 196 GLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTF-IAGVKCLLESVNEKLTSEDVYVSY 274 (507)
Q Consensus 196 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~-~~~~~~~~~~~~~~~~~~d~~l~~ 274 (507)
......|++++...............+++++|+|||||||.||+|+++|.+++.. ...+. ...++..+|++++.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~-----~~~~~~~~d~~~~~ 311 (655)
T PRK03584 237 LPGALLWEDFLAPAEAAELEFEPVPFDHPLWILYSSGTTGLPKCIVHGHGGILLEHLKELG-----LHCDLGPGDRFFWY 311 (655)
T ss_pred cCCcccHHHHhhccccCCCCceecCCCCcEEEEecCCCCCCCceEEECccHHHHHHHHHHH-----HhcCCCCCCEEEEc
Confidence 1124467777653222222233456789999999999999999999999987644 44322 23367889999999
Q ss_pred cChHHHHHHHHHHHHHHcCCEEEEecC-----CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHH
Q 010568 275 LPLAHIFDRAIEEVFISNGAAIGFWRG-----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNI 349 (507)
Q Consensus 275 ~pl~h~~g~~~~~~~l~~G~~v~l~~~-----~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~ 349 (507)
.++.|..+. .++.+++.|+++++.++ ++..+++.++++++|++.++|++++.+.+.-.
T Consensus 312 ~~~~~~~~~-~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~---------------- 374 (655)
T PRK03584 312 TTCGWMMWN-WLVSGLLVGATLVLYDGSPFYPDPNVLWDLAAEEGVTVFGTSAKYLDACEKAGL---------------- 374 (655)
T ss_pred CCchHHhHH-HHHHHHHcCCEEEEeCCCCCCCCHHHHHHHHHHHCCEEEEcCHHHHHHHHhcCC----------------
Confidence 999987543 45678999999999752 78999999999999999999999988754100
Q ss_pred HHHhHHhhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhh--CCcEEeecccccCcccee
Q 010568 350 AYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA--CAHVLQGYGLTETCAGTF 427 (507)
Q Consensus 350 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~--~~~v~~~YG~tE~~~~~~ 427 (507)
.+ ....++ ++||.+++||+++++++.+++.+.+ ++.+++.||+||+++.+.
T Consensus 375 ------------------~~-~~~~~l--------~sLr~i~~~Ge~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~ 427 (655)
T PRK03584 375 ------------------VP-GETHDL--------SALRTIGSTGSPLPPEGFDWVYEHVKADVWLASISGGTDICSCFV 427 (655)
T ss_pred ------------------Cc-cccCCh--------hheEEEEEecCCCCHHHHHHHHHHhCCCceEEeccChHhhhcccc
Confidence 00 001112 3899999999999999999999887 478999999999876544
Q ss_pred ccCCCCCccCCcccccccCceEEEeecCCCccccCCCCCCceEEEecC--CccccccCChhhhh--hhc---ccCceeec
Q 010568 428 VSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGS--TVFSGYYKREDLTK--EVM---VDGWFHTG 500 (507)
Q Consensus 428 ~~~~~~~~~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~--~v~~gY~~~~~~~~--~~~---~dgw~~TG 500 (507)
...+.....++++|.|+||++++|+| +++..+ .|+.|||+|+|| +++.|||++++.+. ..+ .+|||+||
T Consensus 428 ~~~~~~~~~~g~~g~p~~g~~~~ivd-~~g~~~---~g~~GeL~v~gp~p~~~~gy~~~~~~~~~~~~~~~~~~g~~~TG 503 (655)
T PRK03584 428 GGNPLLPVYRGEIQCRGLGMAVEAWD-EDGRPV---VGEVGELVCTKPFPSMPLGFWNDPDGSRYRDAYFDTFPGVWRHG 503 (655)
T ss_pred cCCCCCCcCCCccCCCcCCceeEEEC-CCCCCC---CCCceEEEEccCCCCCcceeeCCCccchHHHhhhccCCCEeecC
Confidence 33333333458999999999999999 877755 468999999996 78999999997543 222 26899999
Q ss_pred -cEEEecC
Q 010568 501 -MGVWEQL 507 (507)
Q Consensus 501 -lg~~d~d 507 (507)
+|++|+|
T Consensus 504 Dl~~~d~d 511 (655)
T PRK03584 504 DWIEITEH 511 (655)
T ss_pred CeEEECCC
Confidence 9999986
|
|
| >PRK12583 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-48 Score=405.55 Aligned_cols=397 Identities=25% Similarity=0.375 Sum_probs=313.6
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHH
Q 010568 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120 (507)
Q Consensus 41 ~~~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~ 120 (507)
....|+.++|++.++++|+++|+++. +.. +.+||.||.++++++|++|.+.|+++||+|+++++|++++++++
T Consensus 15 ~~~~~l~~~l~~~~~~~p~~~a~~~~---~~~----~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~ 87 (558)
T PRK12583 15 LLTQTIGDAFDATVARFPDREALVVR---HQA----LRYTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQ 87 (558)
T ss_pred cccCcHHHHHHHHHHHCCCCeEEEec---CCC----cEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHH
Confidence 44468999999999999999999875 333 57999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCCh-----hHHhhcCC------------CCCCCccEEEEecC
Q 010568 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKI-----PEMLKTFP------------KTTEHLKTIVSFSK 183 (507)
Q Consensus 121 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~------------~~~~~~~~v~~~~~ 183 (507)
|||+++|++++++++..+.+++..+++.++++++|++.... ..+..... ...+.++.++..+.
T Consensus 88 ~a~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (558)
T PRK12583 88 FATARIGAILVNINPAYRASELEYALGQSGVRWVICADAFKTSDYHAMLQELLPGLAEGQPGALACERLPELRGVVSLAP 167 (558)
T ss_pred HHHHhhCCEEEecCCCCCHHHHHHHHHhcCCcEEEEeccccccchhHHHHHHhhhhccccccccccccCCcceEEEEecC
Confidence 99999999999999999999999999999999999976432 11111111 01123334444332
Q ss_pred CChhhHHHHhhcCceEeeHHHHHhccccC-----CCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhh
Q 010568 184 VKPEQREEIEKYGLAVYSWDEFLQLGENK-----QFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLL 258 (507)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~ 258 (507)
... .....|+++....... ........++++++++|||||||.||+|.++|.++..++......+
T Consensus 168 ~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~PK~v~~s~~~l~~~~~~~~~~~ 237 (558)
T PRK12583 168 APP----------PGFLAWHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESL 237 (558)
T ss_pred CCC----------ccccchHhhhhcccccccccccccccccCCCCcEEEEECCCCCCCCceEEeeHHHHHHHHHHHHHHh
Confidence 211 1223455544332110 0111233578899999999999999999999999988877754433
Q ss_pred hhccccCCCCcEEEEecChHHHHHHHH-HHHHHHcCCEEEEecC--CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHh
Q 010568 259 ESVNEKLTSEDVYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG--DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQK 335 (507)
Q Consensus 259 ~~~~~~~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~v~l~~~--~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~ 335 (507)
++..+|++++..|++|.+|... ++.++..|+++++... ++..+++.+.++++|+++++|+++..++......
T Consensus 238 -----~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~v~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~ 312 (558)
T PRK12583 238 -----GLTEHDRLCVPVPLYHCFGMVLANLGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMFIAELDHPQRG 312 (558)
T ss_pred -----CCCCCCeEEEecCchhhhhHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHcccccc
Confidence 6788999999999999999876 6777999999887643 8999999999999999999999987765421100
Q ss_pred hhccchhHHHHHHHHHHhHHhhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhC-CcEE
Q 010568 336 ISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVAC-AHVL 414 (507)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~-~~v~ 414 (507)
..++ +++|.+++||+++++++.+.+.+.++ ..++
T Consensus 313 -------------------------------------~~~~--------~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~ 347 (558)
T PRK12583 313 -------------------------------------NFDL--------SSLRTGIMAGAPCPIEVMRRVMDEMHMAEVQ 347 (558)
T ss_pred -------------------------------------CCCc--------hhheEEEecCCCCCHHHHHHHHHHcCCccee
Confidence 0011 37999999999999999999988876 4799
Q ss_pred eecccccCccceeccCCCC--CccCCcccccccCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhc
Q 010568 415 QGYGLTETCAGTFVSLPNE--MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM 492 (507)
Q Consensus 415 ~~YG~tE~~~~~~~~~~~~--~~~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~ 492 (507)
+.||+||++.+++...... .....++|+|+|++.++|+| +++..+ +.|+.|||+++|+.++.||+++++.+...|
T Consensus 348 ~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d-~~~~~~--~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~ 424 (558)
T PRK12583 348 IAYGMTETSPVSLQTTAADDLERRVETVGRTQPHLEVKVVD-PDGATV--PRGEIGELCTRGYSVMKGYWNNPEATAESI 424 (558)
T ss_pred ccccccccccceeccCcccccccccCCCCccCCCCeEEEEC-CCCCCC--CCCCeeEEEEEeCccchhhcCChHHHHhhc
Confidence 9999999998776554322 22357899999999999999 775544 455899999999999999999999999888
Q ss_pred -ccCceeec-cEEEecC
Q 010568 493 -VDGWFHTG-MGVWEQL 507 (507)
Q Consensus 493 -~dgw~~TG-lg~~d~d 507 (507)
.+|||+|| +|++|+|
T Consensus 425 ~~~~~~~TGDl~~~~~d 441 (558)
T PRK12583 425 DEDGWMHTGDLATMDEQ 441 (558)
T ss_pred CCCCCeeccceEEECCC
Confidence 89999999 9999875
|
|
| >PRK06060 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-49 Score=422.34 Aligned_cols=367 Identities=15% Similarity=0.186 Sum_probs=294.7
Q ss_pred CCHHHHHHHHHHh--CCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHHH
Q 010568 44 ESCWDVFRMAVER--NPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGME 121 (507)
Q Consensus 44 ~tl~~~l~~~~~~--~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~l 121 (507)
.|+.++|.+++.. +||++|++.. ..+||+||.++++++|+.|.+.|+++||+|+|+++|+++++++++
T Consensus 4 ~~~~~~~~~~a~~~~~pd~~a~~~~----------~~~Ty~eL~~~~~~lA~~L~~~g~~~g~~V~i~~~~~~~~~~~~l 73 (705)
T PRK06060 4 GNLAGLLAEQASEAGWYDRPAFYAA----------DVVTHGQIHDGAARLGEVLRNRGLSSGDRVLLCLPDSPDLVQLLL 73 (705)
T ss_pred cCHHHHHHHHHhhccCCCceEEEec----------CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence 4789999998886 7999999743 249999999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCceEee
Q 010568 122 ACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYS 201 (507)
Q Consensus 122 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 201 (507)
||+++|++++|++|.++.+++.++++.++++++|++......+... .++ .
T Consensus 74 a~~~aG~~~vpi~p~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~---------~~~---------------------~ 123 (705)
T PRK06060 74 ACLARGVMAFLANPELHRDDHALAARNTEPALVVTSDALRDRFQPS---------RVA---------------------E 123 (705)
T ss_pred HHHHhCcEEEecCCCCCHHHHHHHHhcCCCcEEEEchHHhhhhccc---------ccc---------------------h
Confidence 9999999999999999999999999999999999986543322110 000 0
Q ss_pred HHHHHhccc-cCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHH
Q 010568 202 WDEFLQLGE-NKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHI 280 (507)
Q Consensus 202 ~~~l~~~~~-~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~ 280 (507)
..+++.... ..+.......++++++++|||||||.||+|.++|.++...+..+.. ....+...|++++..|++|.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~~~~~~~~~~~----~~~~~~~~d~~l~~~~~~~~ 199 (705)
T PRK06060 124 AAELMSEAARVAPGGYEPMGGDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCR----KALRLTPEDTGLCSARMYFA 199 (705)
T ss_pred hhhhhhhccccCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEccccHHHHHHHHHH----HhhCCCCcceeEEeccchhh
Confidence 111111110 0111122345688999999999999999999999999887765421 12357788999999999998
Q ss_pred HHHHH-HHHHHHcCCEEEEecC--CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhHHhh
Q 010568 281 FDRAI-EEVFISNGAAIGFWRG--DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHN 357 (507)
Q Consensus 281 ~g~~~-~~~~l~~G~~v~l~~~--~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (507)
+++.. ++.++..|+++++.+. ++..++..+.++++|+++++|+++..+++.....
T Consensus 200 ~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~---------------------- 257 (705)
T PRK06060 200 YGLGNSVWFPLATGGSAVINSAPVTPEAAAILSARFGPSVLYGVPNFFARVIDSCSPD---------------------- 257 (705)
T ss_pred cchhHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHhcCCeEEeeHHHHHHHHHHhcccc----------------------
Confidence 88754 6778999999999864 8888899999999999999999998886521100
Q ss_pred hhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhh-CCcEEeecccccCccceeccCCCCCcc
Q 010568 358 LKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVSLPNEMSM 436 (507)
Q Consensus 358 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~~~~ 436 (507)
..+++|.+++||+++++++.+.+.+.+ +.++++.||+||++..+....... ..
T Consensus 258 -------------------------~~~slr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~-~~ 311 (705)
T PRK06060 258 -------------------------SFRSLRCVVSAGEALELGLAERLMEFFGGIPILDGIGSTEVGQTFVSNRVDE-WR 311 (705)
T ss_pred -------------------------cccceeEEEEecCcCCHHHHHHHHHHcCCCceEeeeeccccCceEEeccCCC-CC
Confidence 013799999999999999999999888 489999999999987655443322 23
Q ss_pred CCcccccccCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhcccCceeec-cEEEecC
Q 010568 437 IGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG-MGVWEQL 507 (507)
Q Consensus 437 ~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~dgw~~TG-lg~~d~d 507 (507)
.+++|+|+++++++|+| ++++.++ .|+.|||+|+|++++.|||++++.+.. .+|||+|| +|++|+|
T Consensus 312 ~~~iG~p~~~~~v~i~d-~~g~~~~--~g~~GEl~i~g~~v~~GY~~~~~~~~~--~~~~~~TGDl~~~~~d 378 (705)
T PRK06060 312 LGTLGRVLPPYEIRVVA-PDGTTAG--PGVEGDLWVRGPAIAKGYWNRPDSPVA--NEGWLDTRDRVCIDSD 378 (705)
T ss_pred cCcccccCCCcEEEEEC-CCCCCCC--CCCceEEEEccchhhhhhhCCCccccc--CCCcEECCeeEEECCC
Confidence 47899999999999999 7776544 558999999999999999999876422 57999999 9999875
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-48 Score=443.19 Aligned_cols=399 Identities=23% Similarity=0.334 Sum_probs=314.1
Q ss_pred CCCCCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHH
Q 010568 40 IPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIG 119 (507)
Q Consensus 40 ~~~~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~ 119 (507)
.+..+++.+.|+++++++||++|+++. ++ +++||+||.++++++|+.|++ ++++||+|+++++|+++++++
T Consensus 611 ~~~~~~l~~~~~~~a~~~p~~~a~~~~---~~-----~~~Ty~el~~~~~~~a~~L~~-~~~~g~~V~i~~~n~~~~~~~ 681 (1146)
T PRK08633 611 KEALPPLAEAWIDTAKRNWSRLAVADS---TG-----GELSYGKALTGALALARLLKR-ELKDEENVGILLPPSVAGALA 681 (1146)
T ss_pred cCCCCCHHHHHHHHHHhcCCCcEEEcC---CC-----CcCcHHHHHHHHHHHHHHHHH-hCCCCCeEEEECCCchHHHHH
Confidence 466788999999999999999999853 22 369999999999999999987 489999999999999999999
Q ss_pred HHHHHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCC-CCCCccEEEEecCCChhhHHHHhhcCce
Q 010568 120 MEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPK-TTEHLKTIVSFSKVKPEQREEIEKYGLA 198 (507)
Q Consensus 120 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 198 (507)
++||+++|++++|++|..+.+++.+++++++++.+|++++....+.+.... ..+....++..++...... .
T Consensus 682 ~la~~~~G~v~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~ 753 (1146)
T PRK08633 682 NLALLLAGKVPVNLNYTASEAALKSAIEQAQIKTVITSRKFLEKLKNKGFDLELPENVKVIYLEDLKAKIS--------K 753 (1146)
T ss_pred HHHHHHcCCEEEEeCCCcCHHHHHHHHHHcCCCEEEEcHHHHHHHhccCCchhcccCceEEEeehhccccc--------h
Confidence 999999999999999999999999999999999999987655544321100 1122234444433211000 0
Q ss_pred EeeHHHHHhccc-c----CCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEE
Q 010568 199 VYSWDEFLQLGE-N----KQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVS 273 (507)
Q Consensus 199 ~~~~~~l~~~~~-~----~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~ 273 (507)
...+.+...... . .........++++++++|||||||.||+|.++|.++...+......+ +...+|++++
T Consensus 754 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~ 828 (1146)
T PRK08633 754 VDKLTALLAARLLPARLLKRLYGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVF-----NLRNDDVILS 828 (1146)
T ss_pred hHHHHHHHHhccCCHHHHHhhccCCCCCCCEEEEEECCCCCCCCceEEechHHHHHHHHHHHHhc-----CCCCCCEEEE
Confidence 011111111100 0 00001344678999999999999999999999999998887754433 6788999999
Q ss_pred ecChHHHHHHHH-HHHHHHcCCEEEEecC--CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHH
Q 010568 274 YLPLAHIFDRAI-EEVFISNGAAIGFWRG--DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIA 350 (507)
Q Consensus 274 ~~pl~h~~g~~~-~~~~l~~G~~v~l~~~--~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 350 (507)
.+|++|.+++.. .+.++..|+++++.+. ++..+++.++++++|++.++|++++.+++...
T Consensus 829 ~~p~~h~~g~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~----------------- 891 (1146)
T PRK08633 829 SLPFFHSFGLTVTLWLPLLEGIKVVYHPDPTDALGIAKLVAKHRATILLGTPTFLRLYLRNKK----------------- 891 (1146)
T ss_pred cCcHHHHHhHHHHHHHHHHCCCEEEEeCCCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhccc-----------------
Confidence 999999999976 7788999999988764 89999999999999999999999998764210
Q ss_pred HHhHHhhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhCCcEEeecccccCccceeccC
Q 010568 351 YSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSL 430 (507)
Q Consensus 351 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~~~v~~~YG~tE~~~~~~~~~ 430 (507)
.++.++ +++|.+++||+++++++.+.+++.++.++++.||+||++++++...
T Consensus 892 --------------------~~~~~~--------~~lr~~~~gg~~~~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~ 943 (1146)
T PRK08633 892 --------------------LHPLMF--------ASLRLVVAGAEKLKPEVADAFEEKFGIRILEGYGATETSPVASVNL 943 (1146)
T ss_pred --------------------cCcccC--------CCeeeEEEcCCcCCHHHHHHHHHHhCCCeecccccccCcceEEEec
Confidence 001111 3799999999999999999999989999999999999987766543
Q ss_pred CCC---------CccCCcccccccCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhccc----Cce
Q 010568 431 PNE---------MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVD----GWF 497 (507)
Q Consensus 431 ~~~---------~~~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~d----gw~ 497 (507)
++. ...++++|+|+||++++|+| +++. .+++.|+.|||+++|+.++.||+++|+.+++.+.+ |||
T Consensus 944 ~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d-~~~~-~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~~~~ 1021 (1146)
T PRK08633 944 PDVLAADFKRQTGSKEGSVGMPLPGVAVRIVD-PETF-EELPPGEDGLILIGGPQVMKGYLGDPEKTAEVIKDIDGIGWY 1021 (1146)
T ss_pred CcccccccccccCCCCCCccccCCCCEEEEEc-CCCC-ccCCCCCceEEEEcCCCccccccCCccchHHHhhcCCCCCeE
Confidence 321 12357899999999999999 5432 23345699999999999999999999999999866 999
Q ss_pred eec-cEEEecC
Q 010568 498 HTG-MGVWEQL 507 (507)
Q Consensus 498 ~TG-lg~~d~d 507 (507)
+|| +|++|+|
T Consensus 1022 ~TGD~~~~~~~ 1032 (1146)
T PRK08633 1022 VTGDKGHLDED 1032 (1146)
T ss_pred ECCCEEEEcCC
Confidence 999 9999986
|
|
| >PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-48 Score=421.94 Aligned_cols=384 Identities=18% Similarity=0.279 Sum_probs=294.8
Q ss_pred CCCCHHHHHHHHHHhCCC-CCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHH
Q 010568 42 GMESCWDVFRMAVERNPN-NRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120 (507)
Q Consensus 42 ~~~tl~~~l~~~~~~~pd-~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~ 120 (507)
+..|+.++|.++++++|| ++|+.+. + ++.+||+||.++++++|++|.+. +++||+|+++++|++++++++
T Consensus 202 ~~~t~~~~l~~~~~~~p~~~~a~~~~----~----~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~Val~~~n~~e~~~~~ 272 (718)
T PRK08043 202 PRETLYEALLSAQYRYGAGKPCIEDV----N----FTPDSYRKLLKKTLFVGRILEKY-SVEGERIGLMLPNATISAAVI 272 (718)
T ss_pred CCCCHHHHHHHHHHHhCCCCcceEcC----C----CCcccHHHHHHHHHHHHHHHHHh-cCCCceEEEEcCCcHHHHHHH
Confidence 457899999999999998 5777532 1 14699999999999999999987 599999999999999999999
Q ss_pred HHHHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhh-cCCCCCCCccEEEEecCCChhhHHHHhhcCceE
Q 010568 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLK-TFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAV 199 (507)
Q Consensus 121 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 199 (507)
|||+++|++++|+++.++.+++.+++++++++++|++.+....... .......... ++.+++... .
T Consensus 273 lA~~~~G~v~vpl~~~~~~~~l~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~------------~ 339 (718)
T PRK08043 273 FGASLRRRIPAMMNYTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWHLPEQLTQVR-WVYLEDLKD------------D 339 (718)
T ss_pred HHHHHcCCcccccccCcCHHHHHHHHHHcCCcEEEEcHHHHhhccCCChhhhhcccc-EEEhhhhhh------------h
Confidence 9999999999999999999999999999999999998664332100 0110111122 222221100 0
Q ss_pred eeHHH--HH-hccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecC
Q 010568 200 YSWDE--FL-QLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLP 276 (507)
Q Consensus 200 ~~~~~--l~-~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p 276 (507)
..+.+ .. ..............++++++++|||||||.||+|.++|.++...+..+...+ ++..+|++++.+|
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~P 414 (718)
T PRK08043 340 VTTADKLWIFAHLLMPRLAQVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIA-----DFTPNDRFMSALP 414 (718)
T ss_pred cchhHHHHHHHHHhCCccccCCCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhh-----CCCccCeEEEcCc
Confidence 01111 00 0000001111234678999999999999999999999999998887754433 6788999999999
Q ss_pred hHHHHHHHH-HHHHHHcCCEEEEecC--CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHh
Q 010568 277 LAHIFDRAI-EEVFISNGAAIGFWRG--DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSY 353 (507)
Q Consensus 277 l~h~~g~~~-~~~~l~~G~~v~l~~~--~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (507)
++|.+++.. ++.++..|+++++.+. ++..+++.+.++++|+++++|+++..+.+..
T Consensus 415 l~h~~g~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~--------------------- 473 (718)
T PRK08043 415 LFHSFGLTVGLFTPLLTGAEVFLYPSPLHYRIVPELVYDRNCTVLFGTSTFLGNYARFA--------------------- 473 (718)
T ss_pred chhhhhhHHHHHHHHHcCCEEEEeCCcccHHHHHHHHHhcCCeEEEchHHHHHHhhhhc---------------------
Confidence 999999865 6788999999998864 6778899999999999999999987654310
Q ss_pred HHhhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhCCcEEeecccccCccceeccCCCC
Q 010568 354 KFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNE 433 (507)
Q Consensus 354 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~ 433 (507)
+..++ ++||.+++||+++++++.+.+++.+|+++++.||+||++++++...+..
T Consensus 474 ------------------~~~~~--------~~lr~i~~gg~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~ 527 (718)
T PRK08043 474 ------------------NPYDF--------ARLRYVVAGAEKLQESTKQLWQDKFGLRILEGYGVTECAPVVSINVPMA 527 (718)
T ss_pred ------------------Ccccc--------cceEEEEEeCccCCHHHHHHHHHHcCCCeecccCcccccceEEecCCcc
Confidence 00011 3899999999999999999999989999999999999987766554332
Q ss_pred CccCCcccccccCceEEEeecCCCccccCCCCCCceEEEecCCccccccC--Chhh-------hhhhc-ccCceeec-cE
Q 010568 434 MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYK--REDL-------TKEVM-VDGWFHTG-MG 502 (507)
Q Consensus 434 ~~~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~--~~~~-------~~~~~-~dgw~~TG-lg 502 (507)
...+++|+|+||++++|+| +++. ++.|||+++|++++.|||+ +++. +...+ .+|||+|| +|
T Consensus 528 -~~~~svG~p~pg~~~~i~d-~~~~------~~~Gel~v~g~~v~~GY~~~e~~~~~~~~~~~~~~~~~~~gw~~TGDlg 599 (718)
T PRK08043 528 -AKPGTVGRILPGMDARLLS-VPGI------EQGGRLQLKGPNIMNGYLRVEKPGVLEVPTAENARGEMERGWYDTGDIV 599 (718)
T ss_pred -cCCCCCCCcCCCCeeEEec-CCCC------CCceEEEEecCCccccccCCCCcccccccccccccccccCCeEecCCEE
Confidence 3458999999999999998 5442 3579999999999999998 4442 22222 58999999 99
Q ss_pred EEecC
Q 010568 503 VWEQL 507 (507)
Q Consensus 503 ~~d~d 507 (507)
++|+|
T Consensus 600 ~~d~d 604 (718)
T PRK08043 600 RFDEQ 604 (718)
T ss_pred EEcCC
Confidence 99986
|
|
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-48 Score=449.87 Aligned_cols=401 Identities=15% Similarity=0.109 Sum_probs=307.2
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeEeeccCc---CCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHH
Q 010568 43 MESCWDVFRMAVERNPNNRMLGQREIVDGK---AGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIG 119 (507)
Q Consensus 43 ~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~---~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~ 119 (507)
..++.++|+++++++||++|+++. ... ....+++||+||.++++++|++|++.|+++|++|+|+++|+++++++
T Consensus 235 ~~~l~~~~~~~a~~~pd~~A~~~~---~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~~~~~i~~ 311 (1389)
T TIGR03443 235 RGAIHDIFADNAEKHPDRTCVVET---PSFLDPSSKTRSFTYKQINEASNILAHYLLKTGIKRGDVVMIYAYRGVDLVVA 311 (1389)
T ss_pred cCcHHHHHHHHHHhCCCCeEEEec---cccccccCCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEecCCHHHHHH
Confidence 368999999999999999999864 211 12236799999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCCh---hHHhhcCCCC---CCCccEEEEecCCChhhHHHHh
Q 010568 120 MEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKI---PEMLKTFPKT---TEHLKTIVSFSKVKPEQREEIE 193 (507)
Q Consensus 120 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~ 193 (507)
+|||+++|++++|++|.++.+++.++++.++++++|+..... ..+....... ...+..+...+..... .
T Consensus 312 ~lA~l~~G~~~vpldp~~p~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---- 386 (1389)
T TIGR03443 312 VMGVLKAGATFSVIDPAYPPARQTIYLSVAKPRALIVIEKAGTLDQLVRDYIDKELELRTEIPALALQDDGSLV-G---- 386 (1389)
T ss_pred HHHHHhhCcEEeccCCCCcHHHHHHHHHhcCCCEEEEeccccccchhhhhhhhcccccccccceEEeccccccc-c----
Confidence 999999999999999999999999999999999999876421 1111111000 0111111111100000 0
Q ss_pred hcCceEeeHHHHHhccc--cCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEE
Q 010568 194 KYGLAVYSWDEFLQLGE--NKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVY 271 (507)
Q Consensus 194 ~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~ 271 (507)
+.......++..... ..........++++++|+|||||||.||||+++|.++.+.+.++...+ ++..+|++
T Consensus 387 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~ 459 (1389)
T TIGR03443 387 --GSLEGGETDVLAPYQALKDTPTGVVVGPDSNPTLSFTSGSEGIPKGVLGRHFSLAYYFPWMAKRF-----GLSENDKF 459 (1389)
T ss_pred --cccccccccccccccccccCCCCCcCCCCCceEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhc-----CCCCCCEE
Confidence 000000001110000 001111224578999999999999999999999999999888755544 68889999
Q ss_pred EEecChHHHHHHHHHHHHHHcCCEEEEecC----CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHH
Q 010568 272 VSYLPLAHIFDRAIEEVFISNGAAIGFWRG----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLF 347 (507)
Q Consensus 272 l~~~pl~h~~g~~~~~~~l~~G~~v~l~~~----~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~ 347 (507)
+..+|++|..++..++.+|+.|+++++.+. ++..+++.|+++++|+++++|++++.+......
T Consensus 460 ~~~~~~~~d~~~~~i~~~L~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~------------- 526 (1389)
T TIGR03443 460 TMLSGIAHDPIQRDMFTPLFLGAQLLVPTADDIGTPGRLAEWMAKYGATVTHLTPAMGQLLSAQATT------------- 526 (1389)
T ss_pred EEecCceecchHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcccc-------------
Confidence 999999999888889999999999999764 688999999999999999999999887531000
Q ss_pred HHHHHhHHhhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhh-CCcEEeecccccCccce
Q 010568 348 NIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGT 426 (507)
Q Consensus 348 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~-~~~v~~~YG~tE~~~~~ 426 (507)
..+++|.+++||++++..+.+.+.+.. +++++|.||+||++..+
T Consensus 527 -----------------------------------~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~ 571 (1389)
T TIGR03443 527 -----------------------------------PIPSLHHAFFVGDILTKRDCLRLQTLAENVCIVNMYGTTETQRAV 571 (1389)
T ss_pred -----------------------------------cCCCccEEEEecccCCHHHHHHHHHhCCCCEEEECccCCccceeE
Confidence 013799999999999999998888765 78999999999998766
Q ss_pred eccCCCC----------CccCCcccccccCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhcc---
Q 010568 427 FVSLPNE----------MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV--- 493 (507)
Q Consensus 427 ~~~~~~~----------~~~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~--- 493 (507)
+...... .....++|+|+++++++|+| +++...+++.|+.|||+|+||+++.||+|+|+.|.++|.
T Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd-~~~~~~~~~~G~~GEL~i~G~~v~~GY~~~p~~t~~~f~~~~ 650 (1389)
T TIGR03443 572 SYFEIPSRSSDSTFLKNLKDVMPAGKGMKNVQLLVVN-RNDRTQTCGVGEVGEIYVRAGGLAEGYLGLPELNAEKFVNNW 650 (1389)
T ss_pred EEEEccccccccchhhcccCcCcCCCccCCCEEEEEC-CccCCCcCCCCCceEEEecccccchhcCCChhHhhhhccCCc
Confidence 5432211 01235799999999999999 766556667789999999999999999999999999882
Q ss_pred --------------------------cCceeec-cEEEecC
Q 010568 494 --------------------------DGWFHTG-MGVWEQL 507 (507)
Q Consensus 494 --------------------------dgw~~TG-lg~~d~d 507 (507)
+|||+|| +|++|+|
T Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~TGDlg~~~~d 691 (1389)
T TIGR03443 651 FVDPSHWIDLDKENNKPEREFWLGPRDRLYRTGDLGRYLPD 691 (1389)
T ss_pred ccCcccccccccccccccccccCCCccceeecCCceeEcCC
Confidence 5799999 9999976
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-48 Score=411.07 Aligned_cols=392 Identities=16% Similarity=0.163 Sum_probs=292.6
Q ss_pred hCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHHHHHHhcCCEEeeccC
Q 010568 56 RNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYD 135 (507)
Q Consensus 56 ~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~ 135 (507)
+.++++|+++. + +++..+.+||+||.+++.++|+.|+++|+++||+|+++++|++++++++|||+++|++++|+++
T Consensus 96 ~~~~~~a~~~~---~-~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~~n~~e~~~~~lA~~~~Gav~vp~~~ 171 (652)
T TIGR01217 96 AAGTEPALLYV---D-ETHEPAPVTWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAVVAMLATASVGAIWSSCSP 171 (652)
T ss_pred cCCCCeEEEEE---C-CCCCeeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCeEEEecCC
Confidence 35789999886 3 3344578999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHhhcCccEEEecCCC---------hhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCceEeeHHHHH
Q 010568 136 TLGAGAVEFIICHSGVSIAFVEEKK---------IPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFL 206 (507)
Q Consensus 136 ~~~~~~l~~~l~~~~~~~vi~~~~~---------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 206 (507)
.++.+++.+++++++++++|+++.. ...+.+.... .+.++.++.++.......... .......|+++.
T Consensus 172 ~~~~~~l~~~l~~~~~k~li~~~~~~~~~k~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~ 248 (652)
T TIGR01217 172 DFGARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRKE-LPTLRAVVHIPYLGPRETEAP--KIDGALDLEDFT 248 (652)
T ss_pred CCCHHHHHHHHHhcCCcEEEEccccccCCcccchHHHHHHHHhc-CCCccEEEEEeCCCCcccccc--cccCcccHHHHH
Confidence 9999999999999999999998753 2222222222 244556666543211000000 001234577776
Q ss_pred hccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHH-HhhhhhhhhhccccCCCCcEEEEecChHHHHHHHH
Q 010568 207 QLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTF-IAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAI 285 (507)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~-~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~ 285 (507)
...............+++++|+|||||||.||+|+++|.+++.. .... ....++.++|++++.+|+.|..+ ..
T Consensus 249 ~~~~~~~~~~~~~~~~d~~~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~~~~-~~ 322 (652)
T TIGR01217 249 AAAQAAELVFEQLPFDHPLWILFSSGTTGLPKCIVHSAGGTLVQHLKEH-----GLHCDLGPGDRLFYYTTTGWMMW-NW 322 (652)
T ss_pred hcccCCCCCceecCCCCCEEEEEcCCCCCCCCeEEecccHHHHHHHHHH-----HhccCCCCCcEEEEeCCcchhhh-HH
Confidence 54222222233456789999999999999999999999986543 3332 22336788999999999999753 33
Q ss_pred HHHHHHcCCEEEEecC-----CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhHHhhhhc
Q 010568 286 EEVFISNGAAIGFWRG-----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKK 360 (507)
Q Consensus 286 ~~~~l~~G~~v~l~~~-----~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 360 (507)
++.+++.|++++++++ ++..+++.++++++|++..+|.+++.+.+. ..
T Consensus 323 ~~~~l~~G~t~vl~~g~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~-~~-------------------------- 375 (652)
T TIGR01217 323 LVSGLATGATLVLYDGSPGFPATNVLWDIAERTGATLFGTSAKYVMACRKA-GV-------------------------- 375 (652)
T ss_pred HHHHHhcCcEEEEECCCCCCCCchHHHHHHHHhCCeEEecCHHHHHHHHhc-CC--------------------------
Confidence 5578999999999852 678999999999999987777776654321 00
Q ss_pred CCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhC--CcEEeecccccCccceeccCCCCCccCC
Q 010568 361 GHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVAC--AHVLQGYGLTETCAGTFVSLPNEMSMIG 438 (507)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~--~~v~~~YG~tE~~~~~~~~~~~~~~~~~ 438 (507)
.+ ....++ ++||.+++||+++++++.+++.+.++ ..+.+.||+||+++.+....+......+
T Consensus 376 -------~~-~~~~~l--------~sLr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~g 439 (652)
T TIGR01217 376 -------HP-ARTHDL--------SALQCVASTGSPLPPDGFRWVYDEIKADVWLASISGGTDICSCFAGANPTLPVHIG 439 (652)
T ss_pred -------Cc-cccCCh--------hheeEEEeecCCCCHHHHHHHHHHhCCCceEEeccCHHHHhccccCCCCCCCCcCC
Confidence 00 011122 38999999999999999999998775 4677889999975444332222333458
Q ss_pred cccccccCceEEEeecCCCccccCCCCCCceEEEecC--CccccccCChhhhh--hh-c--ccCceeec-cEEEecC
Q 010568 439 TVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGS--TVFSGYYKREDLTK--EV-M--VDGWFHTG-MGVWEQL 507 (507)
Q Consensus 439 s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~--~v~~gY~~~~~~~~--~~-~--~dgw~~TG-lg~~d~d 507 (507)
++|.|.+|++++|+| ++|+.+ .|+.|||+++|| +++.|||++++.+. +. | .+|||+|| +|++|+|
T Consensus 440 ~~g~p~~g~~v~ivd-~~g~~~---~g~~GEl~v~gp~p~~~~gy~~~~~~t~~~~~~~~~~~g~~~tGDlg~~d~d 512 (652)
T TIGR01217 440 EIQAPGLGTAVQSWD-PEGKPV---TGEVGELVCTNPMPSMPIRFWNDPDGSKYRDAYFDTYPGVWRHGDWITLTPR 512 (652)
T ss_pred ccCCCcCCCceEEEC-CCCCCC---CCCccEEEEecCCCccccceeCCCccchhHHhhhcCCCCEEEcCCcEEECCC
Confidence 899999999999999 888765 369999999996 68999999998654 22 3 27899999 9999986
|
This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway. |
| >PRK12476 putative fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-48 Score=411.34 Aligned_cols=389 Identities=16% Similarity=0.198 Sum_probs=294.4
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeeEeeccCc---CCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhH
Q 010568 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGK---AGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWI 117 (507)
Q Consensus 41 ~~~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~---~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~ 117 (507)
+...|+.++|+++++++|+++|+++. +.. ++.++.+||+||.++++++|++|.+. +++||+|+++++|+++++
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~a~~~~---~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~V~l~~~n~~e~~ 106 (612)
T PRK12476 31 PPGTTLISLIERNIANVGDTVAYRYL---DHSHSAAGCAVELTWTQLGVRLRAVGARLQQV-AGPGDRVAILAPQGIDYV 106 (612)
T ss_pred CccCcHHHHHHHHHHhCCCceEEEEE---ccCCCCCCcceEEeHHHHHHHHHHHHHHHHHh-cCCCCEEEEECCCChhHH
Confidence 45578999999999999999999875 321 23456799999999999999999987 999999999999999999
Q ss_pred HHHHHHHhcCCEEeec-cCCCC--hHHHHHHHhhcCccEEEecCCChhHHhhcCCCCC-CCccEEEEecCCChhhHHHHh
Q 010568 118 IGMEACNALGLHCVPL-YDTLG--AGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTT-EHLKTIVSFSKVKPEQREEIE 193 (507)
Q Consensus 118 ~~~lA~~~~G~~~v~l-~~~~~--~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~ 193 (507)
++++||+++|++++|+ ++.++ .+++.++++.++++++|++.+....+........ .....++.++....
T Consensus 107 ~~~lA~~~aG~v~vpl~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------- 179 (612)
T PRK12476 107 AGFFAAIKAGTIAVPLFAPELPGHAERLDTALRDAEPTVVLTTTAAAEAVEGFLRNLPRLRRPRVIAIDAIPD------- 179 (612)
T ss_pred HHHHHHHHcCceeEecCCCCcchhHHHHHHHHHhCCCCEEEEcHHHHHHHHHHHhhcccccCceEEEeccccc-------
Confidence 9999999999999999 57766 7899999999999999998765544333221110 11123333332100
Q ss_pred hcCceEeeHHHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhcccc-CCCCcEEE
Q 010568 194 KYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEK-LTSEDVYV 272 (507)
Q Consensus 194 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~-~~~~d~~l 272 (507)
.. ..........++++++|+|||||||.||+|.++|+++..++......+ . +..+++++
T Consensus 180 --------------~~-~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~~~~~l 239 (612)
T PRK12476 180 --------------SA-GESFVPVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILSI-----DLLDRNTHGV 239 (612)
T ss_pred --------------cc-cccccCCCCCCCceEEEEeCCCCCCCCceEEeeHHHHHHHHHHHHHHh-----ccCCCCceEE
Confidence 00 011112234578999999999999999999999999987766643322 4 67789999
Q ss_pred EecChHHHHHHHHHHHHHHcCCEEEEecC-----CHHHHHHHhh--hhCCeEEecCcHHHHHHHHHHHHhhhccchhHHH
Q 010568 273 SYLPLAHIFDRAIEEVFISNGAAIGFWRG-----DVKLLLEDIG--ELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKT 345 (507)
Q Consensus 273 ~~~pl~h~~g~~~~~~~l~~G~~v~l~~~-----~~~~~~~~i~--~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~ 345 (507)
+++|++|.+|+...+.+++.|+++++... ++..+++.++ ++++++++.+|.++..++........
T Consensus 240 ~~~Pl~h~~g~~~~~~~~~~gg~~~~~~~~~~~~~p~~~~~~i~~~~~~~t~~~~~P~~~~~l~~~~~~~~~-------- 311 (612)
T PRK12476 240 SWLPLYHDMGLSMIGFPAVYGGHSTLMSPTAFVRRPQRWIKALSEGSRTGRVVTAAPNFAYEWAAQRGLPAE-------- 311 (612)
T ss_pred EeCCcccccchHHHHHHHhcCCeEEEECHHHHHHHHHHHHHHHhhhccCCeEEEeCCcHHHHHHHHhcChhh--------
Confidence 99999999999876666556666555432 7889999994 58999999999998887642100000
Q ss_pred HHHHHHHhHHhhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhh---CC---cEEeeccc
Q 010568 346 LFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA---CA---HVLQGYGL 419 (507)
Q Consensus 346 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~---~~---~v~~~YG~ 419 (507)
....++ +++| +++||+++++++.+.+++.+ |+ .+++.||+
T Consensus 312 -------------------------~~~~~l--------~~lr-~~~gg~~~~~~~~~~~~~~~~~~g~~~~~~~~~YG~ 357 (612)
T PRK12476 312 -------------------------GDDIDL--------SNVV-LIIGSEPVSIDAVTTFNKAFAPYGLPRTAFKPSYGI 357 (612)
T ss_pred -------------------------hcCcch--------hHhe-EEecccCCCHHHHHHHHHHHHhcCCCccccccccch
Confidence 000112 2789 99999999999999999877 43 48999999
Q ss_pred ccCccceeccCCCCC--------------------------ccCCcccccccCceEEEeecCC-CccccCCCCCCceEEE
Q 010568 420 TETCAGTFVSLPNEM--------------------------SMIGTVGPPVPNVDVCLESVPE-MEYDALSSTPRGEVCV 472 (507)
Q Consensus 420 tE~~~~~~~~~~~~~--------------------------~~~~s~G~p~pg~~i~ivd~~~-~~~~~~~~g~~Gel~v 472 (507)
||++..++....+.. ...+++|+|+||++++|+| ++ ++.++ .|+.|||++
T Consensus 358 TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~~~~g~~v~ivd-~~~g~~~~--~g~~GEl~v 434 (612)
T PRK12476 358 AEATLFVATIAPDAEPSVVYLDREQLGAGRAVRVAADAPNAVAHVSCGQVARSQWAVIVD-PDTGAELP--DGEVGEIWL 434 (612)
T ss_pred hhhheeeeccCCCCCceEEEEcHHHhhCCCeeecCCCCCCcceeEeCCCcCCCCEEEEEe-CCCCcCCC--CCCEEEEEE
Confidence 998765543322110 0125899999999999999 76 66554 459999999
Q ss_pred ecCCccccccCChhhhhhhcc--------c-----------Cceeec-cEEEe
Q 010568 473 KGSTVFSGYYKREDLTKEVMV--------D-----------GWFHTG-MGVWE 505 (507)
Q Consensus 473 ~g~~v~~gY~~~~~~~~~~~~--------d-----------gw~~TG-lg~~d 505 (507)
+|++++.|||++|+.|.+.|. | +||+|| +|+++
T Consensus 435 ~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~g~~~~~~~~~~~w~~TGDlg~~~ 487 (612)
T PRK12476 435 HGDNIGRGYWGRPEETERTFGAKLQSRLAEGSHADGAADDGTWLRTGDLGVYL 487 (612)
T ss_pred cCCcccccccCChHHHHHHHhhhhccccccccccccccCCCCeeeccccceeE
Confidence 999999999999999999883 2 499999 99875
|
|
| >PRK06145 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-47 Score=398.19 Aligned_cols=381 Identities=22% Similarity=0.320 Sum_probs=306.5
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHHHH
Q 010568 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (507)
Q Consensus 43 ~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (507)
|.++.++|+++++++|+++|+++. + +.+||.||.++++++|.+|.+.|+++|++|+++++|++++++++||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~a~~~~---~------~~~ty~el~~~v~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la 71 (497)
T PRK06145 1 MFNLSASIAFHARRTPDRAALVYR---D------QEISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFA 71 (497)
T ss_pred CccHHHHHHHHHHHCCCceEEEEC---C------cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence 568899999999999999999864 3 4699999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCceEeeH
Q 010568 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSW 202 (507)
Q Consensus 123 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 202 (507)
|+++|++++|+++..+.+++..+++.++++.++++.+...... . . ...+.++.... ..+
T Consensus 72 ~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~-~-----~--~~~~~~~~~~~-------------~~~ 130 (497)
T PRK06145 72 ASYLGAVFLPINYRLAADEVAYILGDAGAKLLLVDEEFDAIVA-L-----E--TPKIVIDAAAQ-------------ADS 130 (497)
T ss_pred HHhcCcEEEecccccCHHHHHHHHHhcCCcEEEEccchhhhhh-c-----c--cceEEecCccc-------------chh
Confidence 9999999999999999999999999999999999876543211 0 0 11222221110 011
Q ss_pred HHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHH
Q 010568 203 DEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282 (507)
Q Consensus 203 ~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g 282 (507)
..+.... ..........++++++++|||||||.||+|.++|.++......... ..++..+++++...|++|.++
T Consensus 131 ~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~-----~~~~~~~~~~~~~~p~~~~~~ 204 (497)
T PRK06145 131 RRLAQGG-LEIPPQAAVAPTDLVRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVI-----ALGLTASERLLVVGPLYHVGA 204 (497)
T ss_pred HHHhccC-CCCCCCCCCCccceEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHH-----hhCCCCCcEEEEecCchhHhH
Confidence 1111111 1111122346789999999999999999999999998866554322 236788999999999999998
Q ss_pred HHH-HHHHHHcCCEEEEecC-CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhHHhhhhc
Q 010568 283 RAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKK 360 (507)
Q Consensus 283 ~~~-~~~~l~~G~~v~l~~~-~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 360 (507)
+.. .+.++..|+++++.+. ++..+++.++++++|++.++|++++.++.....
T Consensus 205 ~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~ll~~~~~-------------------------- 258 (497)
T PRK06145 205 FDLPGIAVLWVGGTLRIHREFDPEAVLAAIERHRLTCAWMAPVMLSRVLTVPDR-------------------------- 258 (497)
T ss_pred HHHHHHHHHhccCEEEECCcCCHHHHHHHHHHhCCeEEEehHHHHHHHHcCCCc--------------------------
Confidence 865 5677999999988776 999999999999999999999999988642110
Q ss_pred CCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhh-CCcEEeecccccCccceeccCCC-CCccCC
Q 010568 361 GHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVSLPN-EMSMIG 438 (507)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~-~~~~~~ 438 (507)
...++ +++|.+++||++++..+.+.+.+.+ +.++++.||+||+++.++....+ .....+
T Consensus 259 -----------~~~~~--------~~l~~~~~gG~~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~ 319 (497)
T PRK06145 259 -----------DRFDL--------DSLAWCIGGGEKTPESRIRDFTRVFTRARYIDAYGLTETCSGDTLMEAGREIEKIG 319 (497)
T ss_pred -----------ccccc--------ccceEEEecCCCCCHHHHHHHHHHcCCCceEEeecCcccCCcceeccCccccccCC
Confidence 00011 3789999999999999999999888 57899999999998866544332 222347
Q ss_pred cccccccCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhcccCceeec-cEEEecC
Q 010568 439 TVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG-MGVWEQL 507 (507)
Q Consensus 439 s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~dgw~~TG-lg~~d~d 507 (507)
++|+|+|+++++|+| +++..++ .|+.|||+++|+.++.||+++++.+.+.|.++||+|| +|++|+|
T Consensus 320 ~~G~~~~~~~~~i~~-~~~~~~~--~~~~Gel~v~g~~~~~Gy~~~~~~~~~~~~~~~~~TGDl~~~~~~ 386 (497)
T PRK06145 320 STGRALAHVEIRIAD-GAGRWLP--PNMKGEICMRGPKVTKGYWKDPEKTAEAFYGDWFRSGDVGYLDEE 386 (497)
T ss_pred CcccCCCCceEEEEC-CCCCCCC--CCCceEEEEECcchhhhhcCChHHHHHHHhCCCeeccceEEEcCC
Confidence 899999999999999 7776554 4589999999999999999999999999999999999 9999875
|
|
| >PLN03052 acetate--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-48 Score=413.07 Aligned_cols=400 Identities=15% Similarity=0.115 Sum_probs=297.5
Q ss_pred HHHHHHHHHhCCCCCceeeEeeccCc--CCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHHHHHH
Q 010568 47 WDVFRMAVERNPNNRMLGQREIVDGK--AGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACN 124 (507)
Q Consensus 47 ~~~l~~~~~~~pd~~a~~~~~~~~~~--~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~ 124 (507)
.++|+++++++||++|+++. +.. +..++++||+||.++++++|+.|+++|+++||+|+++++|++++++++|||+
T Consensus 178 ~~~l~~~~~~~pd~~Ai~~~---~e~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrVai~~pn~~e~via~LA~~ 254 (728)
T PLN03052 178 ECCLTPKPSKTDDSIAIIWR---DEGSDDLPVNRMTLSELRSQVSRVANALDALGFEKGDAIAIDMPMNVHAVIIYLAII 254 (728)
T ss_pred HHHHHHHhccCCCCeEEEEE---CCCCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHH
Confidence 34676666678999999986 432 2346789999999999999999999999999999999999999999999999
Q ss_pred hcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChh------HHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCce
Q 010568 125 ALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIP------EMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLA 198 (507)
Q Consensus 125 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 198 (507)
++|++++|++|.++.+++.+++++++++++|+++.... ...+..... . ..++++........ . .....
T Consensus 255 ~~Gav~vpi~p~~~~~~l~~rl~~~~~k~lit~d~~~~~gk~~~~~~~~~~~~-~--~~~iv~~~~~~~~~--~-~~~~~ 328 (728)
T PLN03052 255 LAGCVVVSIADSFAPSEIATRLKISKAKAIFTQDVIVRGGKSIPLYSRVVEAK-A--PKAIVLPADGKSVR--V-KLREG 328 (728)
T ss_pred HcCCEEEeeCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHhc-C--CcEEEEeCCCCccc--c-ccccC
Confidence 99999999999999999999999999999999875321 111111100 1 12333332110000 0 00012
Q ss_pred EeeHHHHHhccccC----CCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEe
Q 010568 199 VYSWDEFLQLGENK----QFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSY 274 (507)
Q Consensus 199 ~~~~~~l~~~~~~~----~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~ 274 (507)
...|++++...... .........+++++|+|||||||.||+|+++|.+++........ ..++.++|++++.
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~IlyTSGTTG~PKgVv~sh~~~l~~~~~~~~-----~~~l~~~d~~~~~ 403 (728)
T PLN03052 329 DMSWDDFLARANGLRRPDEYKAVEQPVEAFTNILFSSGTTGEPKAIPWTQLTPLRAAADAWA-----HLDIRKGDIVCWP 403 (728)
T ss_pred CccHHHHHhccccccccccccccccCCCCcEEEEecCCCCCCCceEEECchHHHHHHHHHHH-----hcCCCCCcEEEEC
Confidence 34677776543111 11111235689999999999999999999999998776555322 2367889999999
Q ss_pred cChHHHHHHHHHHHHHHcCCEEEEecC--CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHH
Q 010568 275 LPLAHIFDRAIEEVFISNGAAIGFWRG--DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYS 352 (507)
Q Consensus 275 ~pl~h~~g~~~~~~~l~~G~~v~l~~~--~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 352 (507)
.+++|..+...++.+|..|++++++++ ++..+++.++++++|++.++|++++.+.+.-
T Consensus 404 ~~l~w~~g~~~v~~~L~~Gat~vl~~g~p~~~~~~~~i~~~~vT~l~~~Pt~l~~l~~~~-------------------- 463 (728)
T PLN03052 404 TNLGWMMGPWLVYASLLNGATLALYNGSPLGRGFAKFVQDAKVTMLGTVPSIVKTWKNTN-------------------- 463 (728)
T ss_pred CCcHHHhHHHHHHHHHHhCCEEEEeCCCCCCChHHHHHHHHCCCEEEECHHHHHHHHhcC--------------------
Confidence 999999998778899999999999975 5578999999999999999999999875410
Q ss_pred hHHhhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhC-CcEEeecccccCccceeccCC
Q 010568 353 YKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVAC-AHVLQGYGLTETCAGTFVSLP 431 (507)
Q Consensus 353 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~-~~v~~~YG~tE~~~~~~~~~~ 431 (507)
.....+++ +||.++++|++++++...++.+.++ .++.+.||+||+++.+....+
T Consensus 464 -----------------~~~~~dls--------sLr~i~s~Ge~l~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~~~ 518 (728)
T PLN03052 464 -----------------CMAGLDWS--------SIRCFGSTGEASSVDDYLWLMSRAGYKPIIEYCGGTELGGGFVTGSL 518 (728)
T ss_pred -----------------CcccCChh--------heeEEEecCCCCCHHHHHHHHHhcCCCCeEeeccChhhCcccccCCC
Confidence 00111232 7999999999999999888887665 579999999999875544333
Q ss_pred CCCccCCcccccccCceEEEeecCCCccccCCCCCCceEEEecCC--ccccccCChhhhhhhcc-----cC--ceeec-c
Q 010568 432 NEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGST--VFSGYYKREDLTKEVMV-----DG--WFHTG-M 501 (507)
Q Consensus 432 ~~~~~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~--v~~gY~~~~~~~~~~~~-----dg--w~~TG-l 501 (507)
.....++++|.|++|++++|+| ++|+.++.+..+.|||+++++. ...+|+++. ....-|. +| ||+|| +
T Consensus 519 ~~~~~~g~~g~p~~g~~v~v~d-~~g~~v~~g~~~~GEL~v~~~~~~~~~~~~~~~-~~~~yf~~~p~~~g~~~~~tGDl 596 (728)
T PLN03052 519 LQPQAFAAFSTPAMGCKLFILD-DSGNPYPDDAPCTGELALFPLMFGASSTLLNAD-HYKVYFKGMPVFNGKILRRHGDI 596 (728)
T ss_pred CCCCCCCccccCCCCceEEEEC-CCCCCCCCCCCceEEEEEeCCCCCCCccccCch-hhhhhhhcCCCCCCCEEEecCce
Confidence 3334458999999999999999 8888776542246999998653 345677664 3333331 24 99999 9
Q ss_pred EEEecC
Q 010568 502 GVWEQL 507 (507)
Q Consensus 502 g~~d~d 507 (507)
+++|+|
T Consensus 597 ~~~d~d 602 (728)
T PLN03052 597 FERTSG 602 (728)
T ss_pred EEECCC
Confidence 999986
|
|
| >PRK10946 entE enterobactin synthase subunit E; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-48 Score=403.74 Aligned_cols=389 Identities=14% Similarity=0.192 Sum_probs=308.5
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHHHH
Q 010568 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (507)
Q Consensus 43 ~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (507)
+.++.++|+++++ ||++|+++. + +.+||.||.++++++|+.|.+.|+++|++|+++++|+++++++++|
T Consensus 24 ~~~~~~~~~~~a~--p~~~a~~~~---~------~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~v~~~n~~~~~~~~la 92 (536)
T PRK10946 24 DLPLTDILTRHAA--SDAIAVICG---E------RQFSYRELNQASDNLACSLRRQGIKPGDTALVQLGNVAEFYITFFA 92 (536)
T ss_pred CccHHHHHHHhhC--CCCeEEEeC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCChHHHHHHHHH
Confidence 4689999998886 999999864 2 4699999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCCh----hHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCce
Q 010568 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKI----PEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLA 198 (507)
Q Consensus 123 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 198 (507)
|+++|++++++.+.....++..+++.++++.++++.... ......+....+..+.++..+.. .
T Consensus 93 ~~~~G~v~v~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-------------~ 159 (536)
T PRK10946 93 LLKLGVAPVNALFSHQRSELNAYASQIEPALLIADRQHALFSDDDFLNTLVAEHSSLRVVLLLNDD-------------G 159 (536)
T ss_pred HHHcCeEEecCCccccHHHHHHHHhhcCCCEEEEeccccccchHHHHHHHHhhCCCceEEEEecCC-------------C
Confidence 999999888777777788899999999999999986531 11122122222334444443321 1
Q ss_pred EeeHHHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChH
Q 010568 199 VYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLA 278 (507)
Q Consensus 199 ~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~ 278 (507)
...+.+++..... ........++++++++|||||||.||+|+++|.++...+......+ .+..+|++++.+|++
T Consensus 160 ~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~-----~~~~~~~~l~~~p~~ 233 (536)
T PRK10946 160 EHSLDDAINHPAE-DFTATPSPADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEIC-----GFTPQTRYLCALPAA 233 (536)
T ss_pred CccHHHHhhCccc-ccccCCCCCCCeEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhc-----CCCCCceEEEecCcc
Confidence 1234444433321 1122344678999999999999999999999999999888754433 678899999999999
Q ss_pred HHHHHHH--HHHHHHcCCEEEEecC-CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhHH
Q 010568 279 HIFDRAI--EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKF 355 (507)
Q Consensus 279 h~~g~~~--~~~~l~~G~~v~l~~~-~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (507)
|.+++.. ++.++..|+++++.+. ++..+++.++++++|++.++|.+++.++..........
T Consensus 234 h~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~---------------- 297 (536)
T PRK10946 234 HNYPMSSPGALGVFLAGGTVVLAPDPSATLCFPLIEKHQVNVTALVPPAVSLWLQAIAEGGSRA---------------- 297 (536)
T ss_pred ccccchhhhHHHHhhcCcEEEECCCCCHHHHHHHHHHhCCcEEEeChHHHHHHHhhhcccCccc----------------
Confidence 9988764 6778999999988765 89999999999999999999999999876431111000
Q ss_pred hhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhCCcEEeecccccCccceeccCCCCCc
Q 010568 356 HNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMS 435 (507)
Q Consensus 356 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~ 435 (507)
..+++|.+++||+++++++.+.+.+.+++++++.||+||++............
T Consensus 298 ---------------------------~~~~l~~v~~gg~~l~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~ 350 (536)
T PRK10946 298 ---------------------------QLASLKLLQVGGARLSETLARRIPAELGCQLQQVFGMAEGLVNYTRLDDSDER 350 (536)
T ss_pred ---------------------------cccceeEEEECCCCCCHHHHHHHHHhcCCeEEEeecccccceeeecCCCcccc
Confidence 01379999999999999999999998899999999999976443322222223
Q ss_pred cCCcccccc-cCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhc-ccCceeec-cEEEecC
Q 010568 436 MIGTVGPPV-PNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTG-MGVWEQL 507 (507)
Q Consensus 436 ~~~s~G~p~-pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~-~dgw~~TG-lg~~d~d 507 (507)
..+++|+|+ |+++++|+| ++++.++ .|+.|||+++|+.++.||+++++.+.+.| .||||+|| +|++|+|
T Consensus 351 ~~~~~G~p~~~~~~v~i~d-~~~~~~~--~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~d~~~~TGDl~~~d~~ 422 (536)
T PRK10946 351 IFTTQGRPMSPDDEVWVAD-ADGNPLP--QGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLVSIDPD 422 (536)
T ss_pred ccccCCcccCCCceEEEEC-CCCCCCC--CCCccEEEEecCccchhhcCCcccchhhcccCCceecCceEEECCC
Confidence 357899999 899999999 7776544 56999999999999999999999999999 78999999 9999975
|
|
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-49 Score=480.36 Aligned_cols=383 Identities=18% Similarity=0.231 Sum_probs=315.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCc
Q 010568 34 DGFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNC 113 (507)
Q Consensus 34 ~~~~~~~~~~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~ 113 (507)
+......+...++.++|+++++++||++|+++. + +++||+||.++++++|+.|++.|+++|++|+|+++|+
T Consensus 3085 ~~~~~~~~~~~~~~~l~~~~a~~~p~~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s 3155 (3956)
T PRK12467 3085 NATAAAYPSERLVHQLIEAQVARTPEAPALVFG---D------QQLSYAELNRRANRLAHRLIAIGVGPDVLVGVAVERS 3155 (3956)
T ss_pred ccCCCCCCccccHHHHHHHHHHhCCCcceEeeC---C------cccCHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeCCC
Confidence 334444455679999999999999999999875 3 4699999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHh
Q 010568 114 PEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIE 193 (507)
Q Consensus 114 ~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 193 (507)
+++++++|||+++|++++|++|.++.+++.++++.++++++|++......+... . ...++.++..
T Consensus 3156 ~~~vv~~lavl~aGa~~vpld~~~p~~rl~~il~~~~~~~vlt~~~~~~~~~~~-----~-~~~~~~~~~~--------- 3220 (3956)
T PRK12467 3156 VEMIVALLAVLKAGGAYVPLDPEYPRERLAYMIEDSGVKLLLTQAHLLEQLPAP-----A-GDTALTLDRL--------- 3220 (3956)
T ss_pred HHHHHHHHHHHhhCcEeecCCCCChHHHHHHHHhCCCCcEEEechhhhhhcccc-----c-CCceeeecch---------
Confidence 999999999999999999999999999999999999999999987654332111 0 1112222211
Q ss_pred hcCceEeeHHHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEE
Q 010568 194 KYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVS 273 (507)
Q Consensus 194 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~ 273 (507)
...............++++++|+|||||||.||||+++|+++.+.+......+ +++.+|++++
T Consensus 3221 ------------~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-----~~~~~d~~l~ 3283 (3956)
T PRK12467 3221 ------------DLNGYSENNPSTRVMGENLAYVIYTSGSTGKPKGVGVRHGALANHLCWIAEAY-----ELDANDRVLL 3283 (3956)
T ss_pred ------------hhcccCCCCCcccCCCCceEEEEEccCCCCCcceeeehhHHHHHHHHHHHHhc-----CCCcCCEEEE
Confidence 00011112222345689999999999999999999999999999998855544 7889999999
Q ss_pred ecChHHHHHHHHHHHHHHcCCEEEEecC---CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHH
Q 010568 274 YLPLAHIFDRAIEEVFISNGAAIGFWRG---DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIA 350 (507)
Q Consensus 274 ~~pl~h~~g~~~~~~~l~~G~~v~l~~~---~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 350 (507)
++|++|..+...++.+|+.|+++++.+. ++..+++.|.++++|+++++|++++.+++....
T Consensus 3284 ~~~~~fd~~~~~~~~~L~~G~~l~i~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~~---------------- 3347 (3956)
T PRK12467 3284 FMSFSFDGAQERFLWTLICGGCLVVRDNDLWDPEELWQAIHAHRISIACFPPAYLQQFAEDAGG---------------- 3347 (3956)
T ss_pred ecCccHhHHHHHHHHHHhCCCEEEECCcccCCHHHHHHHHHHcCCEEEEcCHHHHHHHHhcccc----------------
Confidence 9999999998889999999999999874 899999999999999999999999988642100
Q ss_pred HHhHHhhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhh-CCcEEeecccccCccceecc
Q 010568 351 YSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVS 429 (507)
Q Consensus 351 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~-~~~v~~~YG~tE~~~~~~~~ 429 (507)
...++||.+++|||++++++.+.+.+.+ +..++|.||+||++..++..
T Consensus 3348 -------------------------------~~~~~lr~~~~gGe~~~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~ 3396 (3956)
T PRK12467 3348 -------------------------------ADCASLDIYVFGGEAVPPAAFEQVKRKLKPRGLTNGYGPTEAVVTVTLW 3396 (3956)
T ss_pred -------------------------------cCCCCceEEEEecCCCCHHHHHHHHHhCCCCEEEeCcccchhEeeeEEE
Confidence 0013799999999999999999998876 57899999999998876654
Q ss_pred CCCCC----ccCCcccccccCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhc-ccC-------ce
Q 010568 430 LPNEM----SMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDG-------WF 497 (507)
Q Consensus 430 ~~~~~----~~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~-~dg-------w~ 497 (507)
..... ....++|+|++|++++|+| ++++.+| .|+.|||+|+|+++++||+|+|+.|+++| .|+ ||
T Consensus 3397 ~~~~~~~~~~~~~~iG~p~~~~~~~v~d-~~~~~vp--~G~~GEL~i~G~~v~~GY~~~~~~T~~~F~~~p~~~~g~r~y 3473 (3956)
T PRK12467 3397 KCGGDAVCEAPYAPIGRPVAGRSIYVLD-GQLNPVP--VGVAGELYIGGVGLARGYHQRPSLTAERFVADPFSGSGGRLY 3473 (3956)
T ss_pred ecccccccCCCCCCCccccCCCEEEEEC-CCCCCCC--CCCCceEEEcchhhhhhccCCcccchhhccCCCCCCCCceee
Confidence 33221 1236899999999999999 7776655 45999999999999999999999999999 544 69
Q ss_pred eec-cEEEecC
Q 010568 498 HTG-MGVWEQL 507 (507)
Q Consensus 498 ~TG-lg~~d~d 507 (507)
+|| +|++|+|
T Consensus 3474 rTGDl~~~~~d 3484 (3956)
T PRK12467 3474 RTGDLARYRAD 3484 (3956)
T ss_pred ccchhheecCC
Confidence 999 9999986
|
|
| >TIGR02262 benz_CoA_lig benzoate-CoA ligase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-47 Score=398.19 Aligned_cols=389 Identities=21% Similarity=0.263 Sum_probs=312.8
Q ss_pred CCHHHHHHHH-HHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHHHH
Q 010568 44 ESCWDVFRMA-VERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (507)
Q Consensus 44 ~tl~~~l~~~-~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (507)
++..+++.++ ++.+||++|++.. + ..+||.||.++++++|++|.+.|+++|++|+++++|+++++++++|
T Consensus 4 ~~~~~~~~~~~~~~~p~~~a~~~~---~------~~~ty~~l~~~~~~~a~~L~~~g~~~g~~v~l~~~~~~~~~~~~~a 74 (508)
T TIGR02262 4 NAAEDLLDRNVVEGRGGKTAFIDD---I------SSLSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLG 74 (508)
T ss_pred hHHHHHHHHHHhcccCCceEEEeC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence 4566777776 5679999999753 2 4699999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCceEeeH
Q 010568 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSW 202 (507)
Q Consensus 123 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 202 (507)
|+++|++++|+++.++.+++.++++.++++++|++......+.+..... +..+.++..+.... ....+
T Consensus 75 ~~~~G~~~v~l~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-----------~~~~~ 142 (508)
T TIGR02262 75 AIRAGIVPVALNTLLTADDYAYMLEDSRARVVFVSGELLPVIKAALGKS-PHLEHRVVVGRPEA-----------GEVQL 142 (508)
T ss_pred HHHcCcEEeeccCCCCHHHHHHHHHhcCCeEEEEchhhHHHHHHHHhcC-CCccEEEEeCCCCc-----------ccccH
Confidence 9999999999999999999999999999999999987665554443322 44555555543211 12234
Q ss_pred HHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHH
Q 010568 203 DEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282 (507)
Q Consensus 203 ~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g 282 (507)
.++...... ........++++++++|||||||.||+|+++|.++...+.... ....++..+|++++.+|++|.++
T Consensus 143 ~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~----~~~~~~~~~d~~l~~~p~~~~~~ 217 (508)
T TIGR02262 143 AELLATESE-QFKPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYA----RNTLGIREDDVVFSAAKLFFAYG 217 (508)
T ss_pred HHHhhcCCC-ccCCCCCCCCCcEEEEeCCCCCCCCcEEEEechhHHHHHHHHh----HHhcCCCCCCEEEEcCchHHHHH
Confidence 444432211 1122334578999999999999999999999999987765421 12236788999999999999999
Q ss_pred HHH-HHHHHHcCCEEEEecC--CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhHHhhhh
Q 010568 283 RAI-EEVFISNGAAIGFWRG--DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLK 359 (507)
Q Consensus 283 ~~~-~~~~l~~G~~v~l~~~--~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 359 (507)
+.. ++.++..|+++++.+. ++..+++.|+++++|+++++|.++..++.....
T Consensus 218 ~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~~~~~~~~------------------------- 272 (508)
T TIGR02262 218 LGNALTFPMSVGATTVLMGERPTPDAVFDRLRRHQPTIFYGVPTLYAAMLADPNL------------------------- 272 (508)
T ss_pred HHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHCCcEEecchHHHHHHhcCccc-------------------------
Confidence 865 6677999999988764 899999999999999999999988876431000
Q ss_pred cCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhCCcEEeecccccCccceeccCCCCCccCCc
Q 010568 360 KGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGT 439 (507)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~s 439 (507)
. ....+++|.+++||+++++++.+.|++.+++++++.||+||++.++..+..+.. ..++
T Consensus 273 ------------~--------~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~-~~~~ 331 (508)
T TIGR02262 273 ------------P--------AEDQVRLRLCTSAGEALPAEVGQRWQARFGVDIVDGIGSTEMLHIFLSNLPGDV-RYGT 331 (508)
T ss_pred ------------c--------ccccccceeEEEcCCCCCHHHHHHHHHHhCCchhhCccccccCceeecCCccCC-CCCC
Confidence 0 000137999999999999999999999999999999999999986665543332 3478
Q ss_pred ccccccCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhcccCceeec-cEEEecC
Q 010568 440 VGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG-MGVWEQL 507 (507)
Q Consensus 440 ~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~dgw~~TG-lg~~d~d 507 (507)
+|+|++|++++|+| +++..++ .|+.|||+++|+.++.||+++++.+...|.+|||+|| ++++++|
T Consensus 332 ~G~~~~g~~v~i~d-~~~~~~~--~g~~Gel~i~~~~~~~gY~~~~~~~~~~~~~~~~~TGD~~~~~~~ 397 (508)
T TIGR02262 332 SGKPVPGYRLRLVG-DGGQDVA--AGEPGELLISGPSSATMYWNNRAKTRDTFQGEWTRSGDKYVRNDD 397 (508)
T ss_pred cCCCCCCcEEEEEC-CCCCCCC--CCCeeEEEEecCccccccCCCHHHhHhhhhcCceeccceEEEcCC
Confidence 99999999999999 7776554 4589999999999999999999999999999999999 9999865
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. |
| >PRK07514 malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-47 Score=397.00 Aligned_cols=385 Identities=24% Similarity=0.363 Sum_probs=308.6
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHHHH
Q 010568 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (507)
Q Consensus 43 ~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (507)
.++|.+++.+++ .+|+++|+... ++ +.+||.||.++++++|++|++.|+++||+|+++++|+++++++++|
T Consensus 2 ~~~l~~~~~~~~-~~~~~~a~~~~---~~-----~~~Ty~eL~~~~~~la~~L~~~g~~~gd~v~i~~~~~~e~~v~~la 72 (504)
T PRK07514 2 NNNLFDALRAAF-ADRDAPFIETP---DG-----LRYTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLA 72 (504)
T ss_pred CccHHHHHHHHh-hCCCCeEEEeC---CC-----CEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence 368999999999 99999999864 33 5799999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCceEeeH
Q 010568 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSW 202 (507)
Q Consensus 123 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 202 (507)
|+++|++++|+++..+.+++..+++.++++++|+++.....+...... .....++.++.... ..+
T Consensus 73 ~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-------------~~~ 137 (504)
T PRK07514 73 TLRAGAVFLPLNTAYTLAELDYFIGDAEPALVVCDPANFAWLSKIAAA--AGAPHVETLDADGT-------------GSL 137 (504)
T ss_pred HHHcCcEEEECCCCCCHHHHHHHHHhCCCcEEEEccchhHHHHHhhhc--cCCceEEEecCCCc-------------ccH
Confidence 999999999999999999999999999999999998766554443221 12222433332111 112
Q ss_pred HHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHH
Q 010568 203 DEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282 (507)
Q Consensus 203 ~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g 282 (507)
.+...... ..........+++++++|||||||.||+|.++|.++...+......+ ++..+|++++.+|++|..+
T Consensus 138 ~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~g 211 (504)
T PRK07514 138 LEAAAAAP-DDFETVPRGADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYW-----RFTPDDVLIHALPIFHTHG 211 (504)
T ss_pred HHhhhhcC-cccCcccCCCCCeEEEEECCCCCCCCcEEEEecHHHHHHHHHHHHHh-----CCCCccEEEEecchHHHHH
Confidence 22221111 11122334678999999999999999999999999998877744333 6788999999999999999
Q ss_pred HHH-HHHHHHcCCEEEEecC-CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhHHhhhhc
Q 010568 283 RAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKK 360 (507)
Q Consensus 283 ~~~-~~~~l~~G~~v~l~~~-~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 360 (507)
+.. ++.++..|+++++.+. ++..+++.+ .++|++.++|.++..++....
T Consensus 212 ~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i--~~~t~~~~~P~~~~~l~~~~~--------------------------- 262 (504)
T PRK07514 212 LFVATNVALLAGASMIFLPKFDPDAVLALM--PRATVMMGVPTFYTRLLQEPR--------------------------- 262 (504)
T ss_pred HHHHHHHHHhcCcEEEECCCCCHHHHHHHH--HhheeeecHHHHHHHHHcCCC---------------------------
Confidence 875 6678999999998876 899999998 479999999999988764200
Q ss_pred CCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhCCcEEeecccccCccceeccCCCCCccCCcc
Q 010568 361 GHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTV 440 (507)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~s~ 440 (507)
....++ +++|.+++||+++++++.+.+++.++.++++.||+||++........ ......++
T Consensus 263 ----------~~~~~~--------~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~-~~~~~~~~ 323 (504)
T PRK07514 263 ----------LTREAA--------AHMRLFISGSAPLLAETHREFQERTGHAILERYGMTETNMNTSNPYD-GERRAGTV 323 (504)
T ss_pred ----------CCcccc--------cceeeEEecCCCCCHHHHHHHHHHhCCcceeecccccccccccCCcc-ccccCccc
Confidence 000011 37999999999999999999999899999999999999865543322 22334789
Q ss_pred cccccCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhc-ccCceeec-cEEEecC
Q 010568 441 GPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTG-MGVWEQL 507 (507)
Q Consensus 441 G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~-~dgw~~TG-lg~~d~d 507 (507)
|.|++|++++|+| ++++ .+++.|+.|||+|+|+.++.||+++++.+++.| .+|||+|| ++++|+|
T Consensus 324 G~~~~~~~v~i~d-~~~~-~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~~ 390 (504)
T PRK07514 324 GFPLPGVSLRVTD-PETG-AELPPGEIGMIEVKGPNVFKGYWRMPEKTAEEFRADGFFITGDLGKIDER 390 (504)
T ss_pred ccCCCCcEEEEEE-CCCC-CCCCCCCceEEEEecCCccccccCCchhhhhhcccCCCeeecceEEEcCC
Confidence 9999999999999 4443 334466999999999999999999999999999 58999999 9999875
|
|
| >PRK06188 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-47 Score=400.22 Aligned_cols=387 Identities=21% Similarity=0.288 Sum_probs=310.8
Q ss_pred CCCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHHH
Q 010568 42 GMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGME 121 (507)
Q Consensus 42 ~~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~l 121 (507)
...|+.++|.++++++|+++|+++. + +.+||.||.++++++|+.|.+.|+++|++|+++++|+++++++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~a~~~~---~------~~~Ty~~l~~~~~~~a~~L~~~gv~~~~~V~i~~~~~~~~~~~~l 80 (524)
T PRK06188 10 SGATYGHLLVSALKRYPDRPALVLG---D------TRLTYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIG 80 (524)
T ss_pred CCccHHHHHHHHHHHCCCCeEEEEC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence 3468999999999999999999864 3 469999999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCC-ChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCceEe
Q 010568 122 ACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEK-KIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVY 200 (507)
Q Consensus 122 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 200 (507)
||+++|+++++++|..+.+++..+++.++++.++++.. .......... ....+..++.+.....
T Consensus 81 a~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-------------- 145 (524)
T PRK06188 81 AAQLAGLRRTALHPLGSLDDHAYVLEDAGISTLIVDPAPFVERALALLA-RVPSLKHVLTLGPVPD-------------- 145 (524)
T ss_pred HHHHhCCEEEecccCCCHHHHHHHHHhcCceEEEEecchhhHHHHHHhh-hcCCceEEEEeCCccc--------------
Confidence 99999999999999999999999999999999999876 3332222211 1133445555443211
Q ss_pred eHHHHHhccc--cCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChH
Q 010568 201 SWDEFLQLGE--NKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLA 278 (507)
Q Consensus 201 ~~~~l~~~~~--~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~ 278 (507)
..++..... ..........++++++++|||||||.||+|.++|.++...+...... ..+..++++++.+|++
T Consensus 146 -~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~-----~~~~~~~~~l~~~pl~ 219 (524)
T PRK06188 146 -GVDLLAAAAKFGPAPLVAAALPPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLAE-----WEWPADPRFLMCTPLS 219 (524)
T ss_pred -hhhHHHhhhccCcccccccCCCCCeEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhh-----cCCCcCcEEEEecCch
Confidence 111111110 00111122245669999999999999999999999999988874443 3778899999999999
Q ss_pred HHHHHHHHHHHHHcCCEEEEecC-CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhHHhh
Q 010568 279 HIFDRAIEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHN 357 (507)
Q Consensus 279 h~~g~~~~~~~l~~G~~v~l~~~-~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (507)
|.+++. ++.+++.|+++++.+. ++..+++.++++++|+++++|+++..+++.....
T Consensus 220 ~~~g~~-~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~---------------------- 276 (524)
T PRK06188 220 HAGGAF-FLPTLLRGGTVIVLAKFDPAEVLRAIEEQRITATFLVPTMIYALLDHPDLR---------------------- 276 (524)
T ss_pred hhhhHH-HHHHHHcCCEEEEcCCCCHHHHHHHHHHhCCEEEEehHHHHHHHHhCcCcc----------------------
Confidence 988874 5677999999999877 8999999999999999999999999886521100
Q ss_pred hhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhCCcEEeecccccCccceeccCCCC----
Q 010568 358 LKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNE---- 433 (507)
Q Consensus 358 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~---- 433 (507)
..++ +++|.+++||+++++++...+.+.++..+++.||+||++..+.......
T Consensus 277 ---------------~~~l--------~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~ 333 (524)
T PRK06188 277 ---------------TRDL--------SSLETVYYGASPMSPVRLAEAIERFGPIFAQYYGQTEAPMVITYLRKRDHDPD 333 (524)
T ss_pred ---------------CCCC--------cceeEEEEcCCCCCHHHHHHHHHHhCchhhheeCccccCCceeecCchhcccc
Confidence 0011 3899999999999999988888888989999999999976655443321
Q ss_pred -CccCCcccccccCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhcccCceeec-cEEEecC
Q 010568 434 -MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG-MGVWEQL 507 (507)
Q Consensus 434 -~~~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~dgw~~TG-lg~~d~d 507 (507)
.....++|+|+||++++|+| +++..++ .|+.|||+++|+.++.||+++++.+...|.+|||+|| +|++|+|
T Consensus 334 ~~~~~~~~G~p~~g~~v~i~~-~~~~~~~--~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~ 406 (524)
T PRK06188 334 DPKRLTSCGRPTPGLRVALLD-EDGREVA--QGEVGEICVRGPLVMDGYWNRPEETAEAFRDGWLHTGDVAREDED 406 (524)
T ss_pred ccccCCccccccCCcEEEEEc-CCCCCCC--CCCeeEEEEECcchhhhhcCChHHhhhhhcCCceeecceEEEcCC
Confidence 23347899999999999999 7766544 5689999999999999999999999999999999999 9999875
|
|
| >TIGR03205 pimA dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-47 Score=399.32 Aligned_cols=407 Identities=22% Similarity=0.323 Sum_probs=309.5
Q ss_pred CCCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHHH
Q 010568 42 GMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGME 121 (507)
Q Consensus 42 ~~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~l 121 (507)
.+.|+.++|+++++++|+++|+++. + +.+||.||.++++++|++|.+.|+++||+|+++++|+++++++++
T Consensus 19 ~~~~~~~~~~~~~~~~p~~~a~~~~---~------~~~ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~l 89 (541)
T TIGR03205 19 ARGTLPDLLSKAAADYGPRPALEFR---D------RPITYTELEAMAETAAAALLRAGYGKDASVALYLGNTPDHPINFF 89 (541)
T ss_pred CCCCHHHHHHHHHHHcCCCceEEEC---C------cEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHH
Confidence 4568999999999999999999864 3 469999999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCC--hhHHhhcCCCCCCCccEEEEecCCChhh--HHHH-hhcC
Q 010568 122 ACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKK--IPEMLKTFPKTTEHLKTIVSFSKVKPEQ--REEI-EKYG 196 (507)
Q Consensus 122 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~-~~~~ 196 (507)
||+++|++++|++|..+.+++.++++.++++++|+++.. .....+.... ..+..+++++...... .... ....
T Consensus 90 a~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~vi~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (541)
T TIGR03205 90 GALKAGARVVHLSPLDGERALSHKLSDSGARLLITSDLAALLPMALKFLEK--GLLDRLIVCEDDNWGKVGTPQAPIPAD 167 (541)
T ss_pred HHHhcCeEEEecCCCCCHHHHHHHHhhcCceEEEEeCchhhhHHHHHhhhc--ccceEEEEecccccccccccccccCCC
Confidence 999999999999999999999999999999999998642 1111221111 1123333333211000 0000 0011
Q ss_pred ceEeeHHHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhh-ccccCCCCcEEEEec
Q 010568 197 LAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLES-VNEKLTSEDVYVSYL 275 (507)
Q Consensus 197 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~-~~~~~~~~d~~l~~~ 275 (507)
....++++++..... ........++++++++|||||||.||+|.++|.++....... ..+.. ........+++++..
T Consensus 168 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~-~~~~~~~~~~~~~~~~~l~~~ 245 (541)
T TIGR03205 168 PRIVTYADFVKGAAA-PAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIY-DVWGKPSRATRGDVERVICVL 245 (541)
T ss_pred cccccHHHHHhcCCC-CCCCCCCCccCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHH-HhhcccccccCCCCceEEEec
Confidence 124456666543211 222234567899999999999999999999999987654421 11100 011233457999999
Q ss_pred ChHHHHHHHH-HHHHHHcCCEEEEecC-CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHh
Q 010568 276 PLAHIFDRAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSY 353 (507)
Q Consensus 276 pl~h~~g~~~-~~~~l~~G~~v~l~~~-~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (507)
|++|.+++.. ++.++..|+++++.+. ++..+++.|.++++|++.++|+++..+++...
T Consensus 246 p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-------------------- 305 (541)
T TIGR03205 246 PLFHIYALTVILLRSLRRGDLISLHQRFDVAAVFRDIEEKRATVFPGVPTMWIALANDPS-------------------- 305 (541)
T ss_pred cHHHHHHHHHHHHHHHhcCCEEEecCCCCHHHHHHHHHHcCCeEeechHHHHHHHHhCcc--------------------
Confidence 9999988866 6777999999888765 99999999999999999999999988754100
Q ss_pred HHhhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhCCcEEeecccccCccceeccCCCC
Q 010568 354 KFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNE 433 (507)
Q Consensus 354 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~ 433 (507)
....++ +++|.+++||+++++++.+++.+.++.++++.||+||++..++......
T Consensus 306 -----------------~~~~~~--------~~l~~i~~gg~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~ 360 (541)
T TIGR03205 306 -----------------LEKRDL--------SSLATIGSGGAPLPVEVANFFERKTGLKLKSGWGMTETCSPGTGHPPEG 360 (541)
T ss_pred -----------------ccccCc--------cccceEEEccccCCHHHHHHHHHHhCCCeecccccccCCcccccCCCCC
Confidence 000011 3789999999999999999999888999999999999988766554433
Q ss_pred CccCCcccccccCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhcccCceeec-cEEEecC
Q 010568 434 MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG-MGVWEQL 507 (507)
Q Consensus 434 ~~~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~dgw~~TG-lg~~d~d 507 (507)
...++++|+|++++.++|++++++ ..+++.|+.|||+++|++++.||+++++.+.+.|.++||+|| ++++|+|
T Consensus 361 ~~~~~~~G~~~~~~~~~v~~~d~~-~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~TGD~~~~~~~ 434 (541)
T TIGR03205 361 PDKPGSIGLMLPGIELDVVSLDDP-TKVLPPGEVGELRIRGPNVTRGYWNRPEESAEAFVGDRFLTGDIGYMDTD 434 (541)
T ss_pred CCCCCCcceeccCceeEEEecCCC-CccCCCCCeeEEEEecCCccccccCChhhhHhhhccCCcccCceEEEcCC
Confidence 334578999999999998753322 223445689999999999999999999999999989999999 9999875
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. |
| >PRK10252 entF enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-48 Score=443.77 Aligned_cols=376 Identities=19% Similarity=0.222 Sum_probs=309.1
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHHHH
Q 010568 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (507)
Q Consensus 43 ~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (507)
..++.++|+++++++||++|+++. + +.+||+||.++++++|+.|.+.|+++|++|+|++++++++++++||
T Consensus 457 ~~~l~~~~~~~~~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~la~~L~~~g~~~g~~V~l~~~~~~~~i~~~la 527 (1296)
T PRK10252 457 ETTLSALVAQQAAKTPDAPALADA---R------YQFSYREMREQVVALANLLRERGVKPGDSVAVALPRSVFLTLALHA 527 (1296)
T ss_pred cCCHHHHHHHHHHhCCCCeEEEcC---C------CcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence 368999999999999999999864 3 4699999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCceEeeH
Q 010568 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSW 202 (507)
Q Consensus 123 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 202 (507)
|+++|++++|++|..+.+++.++++.++++++|++.+....+... ..+ .+. .+
T Consensus 528 ~~~~G~~~vpld~~~p~~~~~~~l~~~~~~~~i~~~~~~~~~~~~-----~~~-~~~---------------------~~ 580 (1296)
T PRK10252 528 IVEAGAAWLPLDTGYPDDRLKMMLEDARPSLLITTADQLPRFADV-----PDL-TSL---------------------CY 580 (1296)
T ss_pred HHHhCCEEEecCccCHHHHHHHHHHhCCCCEEEECcchhhhcccC-----CCc-eee---------------------ec
Confidence 999999999999999999999999999999999987654433211 111 011 11
Q ss_pred HHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHH
Q 010568 203 DEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282 (507)
Q Consensus 203 ~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g 282 (507)
++..... .........++++++++|||||||.||||+++|.++.+.+.+....+ ++..+|++++..|++|..+
T Consensus 581 ~~~~~~~--~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~~fd~~ 653 (1296)
T PRK10252 581 NAPLAPQ--GAAPLQLSQPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRLLWMQNHY-----PLTADDVVLQKTPCSFDVS 653 (1296)
T ss_pred ccccccc--cCCCCCCCCCCCeEEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhc-----CCCCCCEEEEeCCcchhhh
Confidence 1111110 01111223578999999999999999999999999999988855544 7889999999999999999
Q ss_pred HHHHHHHHHcCCEEEEecC----CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhHHhhh
Q 010568 283 RAIEEVFISNGAAIGFWRG----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNL 358 (507)
Q Consensus 283 ~~~~~~~l~~G~~v~l~~~----~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 358 (507)
+..++.++..|+++++.+. ++..+++.++++++|++.++|++++.+++........
T Consensus 654 ~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~~~-------------------- 713 (1296)
T PRK10252 654 VWEFFWPFIAGAKLVMAEPEAHRDPLAMQQFFAEYGVTTTHFVPSMLAAFVASLTPEGAR-------------------- 713 (1296)
T ss_pred HHHHHHHHhCCCEEEECChhccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhhcccccc--------------------
Confidence 8889999999999999763 8899999999999999999999999876532111000
Q ss_pred hcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhCCcEEeecccccCccceeccCCCC-----
Q 010568 359 KKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNE----- 433 (507)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~----- 433 (507)
....++|.+++||+++++++.+.|.+.++++++|.||+||++..++......
T Consensus 714 -----------------------~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~ 770 (1296)
T PRK10252 714 -----------------------QSCASLRQVFCSGEALPADLCREWQQLTGAPLHNLYGPTEAAVDVSWYPAFGEELAA 770 (1296)
T ss_pred -----------------------ccCCCccEEEEecCCCCHHHHHHHHhcCCCEEEeCCCcchhhheeeeeecccccccc
Confidence 0013789999999999999999999988999999999999987766543322
Q ss_pred -CccCCcccccccCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhc-cc------Cceeec-cEEE
Q 010568 434 -MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VD------GWFHTG-MGVW 504 (507)
Q Consensus 434 -~~~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~-~d------gw~~TG-lg~~ 504 (507)
.....++|+|++|++++|+| ++++.++. |+.|||+|+|++++.||+++|+.|+++| .+ +||+|| +|++
T Consensus 771 ~~~~~~~iG~p~~~~~~~i~d-~~~~~~~~--g~~Gel~i~g~~~~~GY~~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~ 847 (1296)
T PRK10252 771 VRGSSVPIGYPVWNTGLRILD-ARMRPVPP--GVAGDLYLTGIQLAQGYLGRPDLTASRFIADPFAPGERMYRTGDVARW 847 (1296)
T ss_pred cCCCCCCcccccCCCEEEEEC-CCCCCCCC--CCceEEEecccccchhhCCCcccchhhcccCCCCCCCEEEecCceEEE
Confidence 12246799999999999999 77766554 5999999999999999999999999999 33 399999 9999
Q ss_pred ecC
Q 010568 505 EQL 507 (507)
Q Consensus 505 d~d 507 (507)
|+|
T Consensus 848 ~~~ 850 (1296)
T PRK10252 848 LDD 850 (1296)
T ss_pred cCC
Confidence 875
|
|
| >PRK06164 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-47 Score=400.31 Aligned_cols=399 Identities=18% Similarity=0.224 Sum_probs=306.7
Q ss_pred CCCCCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHH
Q 010568 40 IPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIG 119 (507)
Q Consensus 40 ~~~~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~ 119 (507)
.+...++.++|.+.++.+||++|++.. + +.+||.||.+++.++|+.|.+.|+++||+|+++++|+++++++
T Consensus 6 ~~~~~~l~~~l~~~a~~~p~~~a~~~~---~------~~~Ty~~L~~~~~~~a~~L~~~g~~~g~~V~i~~~n~~~~~~~ 76 (540)
T PRK06164 6 APRADTLASLLDAHARARPDAVALIDE---D------RPLSRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVL 76 (540)
T ss_pred ccCCCCHHHHHHHHHHhCCCCeEEecC---C------CcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcHHHHHH
Confidence 456678999999999999999999843 2 4699999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChh-----HHhhcCCCCCCCccEEEEecCCChhhHHHHhh
Q 010568 120 MEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIP-----EMLKTFPKTTEHLKTIVSFSKVKPEQREEIEK 194 (507)
Q Consensus 120 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 194 (507)
++||+++|++++|+++..+.+++.++++.++++++|++.+... .+..........++.++.++.......
T Consensus 77 ~la~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 151 (540)
T PRK06164 77 FLACARLGATVIAVNTRYRSHEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDALPPLRAIAVVDDAADATP----- 151 (540)
T ss_pred HHHHHHhCcEEEecCCCCCcHHHHHHHHhcCccEEEEccccccccHHHHhhcccccccCCcceEEEeccCcccCC-----
Confidence 9999999999999999999999999999999999999876421 111222111234445555542111000
Q ss_pred cCceEeeHHHHHhccccCCC---CCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEE
Q 010568 195 YGLAVYSWDEFLQLGENKQF---DLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVY 271 (507)
Q Consensus 195 ~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~ 271 (507)
......+.++......... .......+++++++|||||||.||+|.++|.++...+..+...+ ++..++++
T Consensus 152 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~ 225 (540)
T PRK06164 152 -APAPGARVQLFALPDPAPPAAAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAY-----GYDPGAVL 225 (540)
T ss_pred -CCCcccccccccccccCCcccccccCCCCCceEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhc-----CCCCCCEE
Confidence 0000111111111100000 01223468899999999999999999999999998888755444 67889999
Q ss_pred EEecChHHHHHHHHHHHHHHcCCEEEEecC-CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHH
Q 010568 272 VSYLPLAHIFDRAIEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIA 350 (507)
Q Consensus 272 l~~~pl~h~~g~~~~~~~l~~G~~v~l~~~-~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 350 (507)
++.+|++|.+|+..++.++..|+++++.+. ++..+++.|+++++|+++++|+++..+++....
T Consensus 226 l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~l~~l~~~~~~---------------- 289 (540)
T PRK06164 226 LAALPFCGVFGFSTLLGALAGGAPLVCEPVFDAARTARALRRHRVTHTFGNDEMLRRILDTAGE---------------- 289 (540)
T ss_pred EEcCCchhHHHHHHHHHHHhcCceEEecCCCCHHHHHHHHHHhCCeeecCCHHHHHHHHHhhcc----------------
Confidence 999999999999888899999999998876 899999999999999999999999998763100
Q ss_pred HHhHHhhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcC-CCCCHHHHHHHHHhhCCcEEeecccccCccceecc
Q 010568 351 YSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGA-APLTPHVETFLRVVACAHVLQGYGLTETCAGTFVS 429 (507)
Q Consensus 351 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G-~~l~~~l~~~~~~~~~~~v~~~YG~tE~~~~~~~~ 429 (507)
..++ ++++.+.++| .+...++.+++... ++++++.||+||++.+++..
T Consensus 290 ----------------------~~~~--------~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~ 338 (540)
T PRK06164 290 ----------------------RADF--------PSARLFGFASFAPALGELAALARAR-GVPLTGLYGSSEVQALVALQ 338 (540)
T ss_pred ----------------------cCCC--------cceeeeeeccCCcchHHHHHHHhhc-CCceecceeeccccceeecc
Confidence 0001 3677776665 55566677777665 89999999999998876655
Q ss_pred CCCCC--ccCCcccccc-cCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhc-ccCceeec-cEEE
Q 010568 430 LPNEM--SMIGTVGPPV-PNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTG-MGVW 504 (507)
Q Consensus 430 ~~~~~--~~~~s~G~p~-pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~-~dgw~~TG-lg~~ 504 (507)
..... ....+.|.|+ ++++++|+| ++++ .+++.|+.|||+|+|++++.||+++++.+...| .+|||+|| +|++
T Consensus 339 ~~~~~~~~~~~~~g~~~~~~~~~~i~d-~~~~-~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~ 416 (540)
T PRK06164 339 PATDPVSVRIEGGGRPASPEARVRARD-PQDG-ALLPDGESGEIEIRAPSLMRGYLDNPDATARALTDDGYFRTGDLGYT 416 (540)
T ss_pred CCCCCCcceeccCccccCCCeEEEEec-CCCC-cCCCCCCeeEEEEecccccccccCCchhhhhcccCCCceecCCeEEE
Confidence 43322 2235678876 899999999 4433 334566999999999999999999999999999 78999999 9999
Q ss_pred ecC
Q 010568 505 EQL 507 (507)
Q Consensus 505 d~d 507 (507)
|+|
T Consensus 417 ~~~ 419 (540)
T PRK06164 417 RGD 419 (540)
T ss_pred cCC
Confidence 975
|
|
| >PRK06018 putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-47 Score=397.29 Aligned_cols=402 Identities=18% Similarity=0.252 Sum_probs=313.7
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHH
Q 010568 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120 (507)
Q Consensus 41 ~~~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~ 120 (507)
....|+.++|+++++++||+++++.. . .+..+++||.||.++++++|++|.+.|+++||+|+++++|++++++++
T Consensus 7 ~~~~~~~~~~~~~a~~~~~~~~~~~~---~--~~~~~~~Ty~el~~~v~~la~~L~~~g~~~gd~v~i~~~~~~~~~~~~ 81 (542)
T PRK06018 7 DWPLLCHRIIDHAARIHGNREVVTRS---V--EGPIVRTTYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAW 81 (542)
T ss_pred cCCCCHHHHHHHHHHhCCCceEEEee---c--cCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHH
Confidence 34469999999999999999999843 1 123467999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCceEe
Q 010568 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVY 200 (507)
Q Consensus 121 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 200 (507)
+||+++|++++|++|..+.+++..+++.++++.+|++.+....+.+..... +.++.++++.+..... ........
T Consensus 82 la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~ 156 (542)
T PRK06018 82 YGIMGIGAICHTVNPRLFPEQIAWIINHAEDRVVITDLTFVPILEKIADKL-PSVERYVVLTDAAHMP----QTTLKNAV 156 (542)
T ss_pred HHHHhcCeEeeccccccCHHHHHHHHhccCCCEEEEccccHHHHHHHHhhC-CCccEEEEeccccccc----ccCccccc
Confidence 999999999999999999999999999999999999988776655443322 4455555554321100 00011233
Q ss_pred eHHHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHH-HHHhhhhhhhhhccccCCCCcEEEEecChHH
Q 010568 201 SWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIV-TFIAGVKCLLESVNEKLTSEDVYVSYLPLAH 279 (507)
Q Consensus 201 ~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~-~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h 279 (507)
.+.++...... .........+++++++|||||||.||+|.++|.+++ ...... .....++..+|+++...|++|
T Consensus 157 ~~~~~~~~~~~-~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~----~~~~~~~~~~d~~~~~~p~~h 231 (542)
T PRK06018 157 AYEEWIAEADG-DFAWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMAN----NGDALGTSAADTMLPVVPLFH 231 (542)
T ss_pred cHHHHhccCCc-ccCcccCCccceeeEEecCCCCCCCcEEEEechhHHHHHHHHh----hhhhcCCCCCCEEEEecCHHH
Confidence 56666554321 222234466789999999999999999999999753 222111 112336788999999999999
Q ss_pred HHHHHHHHHHHHcCCEEEEecC--CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhHHhh
Q 010568 280 IFDRAIEEVFISNGAAIGFWRG--DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHN 357 (507)
Q Consensus 280 ~~g~~~~~~~l~~G~~v~l~~~--~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (507)
.+++...+.++..|+++++... ++..+++.++++++|+++++|++++.++........
T Consensus 232 ~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~-------------------- 291 (542)
T PRK06018 232 ANSWGIAFSAPSMGTKLVMPGAKLDGASVYELLDTEKVTFTAGVPTVWLMLLQYMEKEGL-------------------- 291 (542)
T ss_pred HhhhHHHHhhhhcCceEEccCcCCCHHHHHHHHHhcCCceeecCcHHHHHHHhcccccCC--------------------
Confidence 9998877788999999988753 889999999999999999999999998653221100
Q ss_pred hhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhCCcEEeecccccCccceeccCCCC----
Q 010568 358 LKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNE---- 433 (507)
Q Consensus 358 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~---- 433 (507)
++ +++|.+++||+++++.+.+.|++ ++.++++.||+||++.+++......
T Consensus 292 -----------------~~--------~~lr~~~~~G~~l~~~~~~~~~~-~~~~~~~~YG~tE~~~~~~~~~~~~~~~~ 345 (542)
T PRK06018 292 -----------------KL--------PHLKMVVCGGSAMPRSMIKAFED-MGVEVRHAWGMTEMSPLGTLAALKPPFSK 345 (542)
T ss_pred -----------------Cc--------ccceEEEEcCCCCCHHHHHHHHH-hCCCeEeeecccccCcccccccCcccccc
Confidence 01 37999999999999999999999 8999999999999987765432111
Q ss_pred ------CccCCcccccccCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhc-ccCceeec-cEEEe
Q 010568 434 ------MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTG-MGVWE 505 (507)
Q Consensus 434 ------~~~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~-~dgw~~TG-lg~~d 505 (507)
.....++|+|.+|++++|+| +++...+.+.+..|||+++|+.++.|||++. ...+ .+|||+|| ++++|
T Consensus 346 ~~~~~~~~~~~~~G~~~~g~~i~v~d-~~~~~~~~~~~~~Gel~i~g~~~~~gy~~~~---~~~~~~~~~~~TGDl~~~~ 421 (542)
T PRK06018 346 LPGDARLDVLQKQGYPPFGVEMKITD-DAGKELPWDGKTFGRLKVRGPAVAAAYYRVD---GEILDDDGFFDTGDVATID 421 (542)
T ss_pred CCchhhhhccccCCCCCCCcEEEEEC-CCCCCCCCCCCceeEEEEecCCcchhhhcCc---ccEecCCcEEEcCCEEEEc
Confidence 01135789999999999999 8888777755578999999999999999842 2333 68999999 99998
Q ss_pred cC
Q 010568 506 QL 507 (507)
Q Consensus 506 ~d 507 (507)
+|
T Consensus 422 ~~ 423 (542)
T PRK06018 422 AY 423 (542)
T ss_pred CC
Confidence 75
|
|
| >PRK08751 putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-46 Score=396.47 Aligned_cols=405 Identities=23% Similarity=0.380 Sum_probs=309.9
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHH-HCCCCCCCEEEEEeCCchhhHHHHH
Q 010568 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIR-TCGVEERGKCGIYGVNCPEWIIGME 121 (507)
Q Consensus 43 ~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~-~~gv~~gd~V~i~~~n~~~~~~~~l 121 (507)
..++.++|.++++++|+++|+++. + +.+||.||.++++++|+.|. +.|+++||+|+++++|++++++++|
T Consensus 24 ~~~~~~~l~~~~~~~~~~~a~~~~----~-----~~~Ty~el~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~l 94 (560)
T PRK08751 24 FRTVAEVFATSVAKFADRPAYHSF----G-----KTITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATF 94 (560)
T ss_pred CCcHHHHHHHHHHhCCCCceEEEC----C-----ceeeHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHH
Confidence 367999999999999999999864 3 46999999999999999997 6899999999999999999999999
Q ss_pred HHHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecC--CC----hhhHH-----
Q 010568 122 ACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSK--VK----PEQRE----- 190 (507)
Q Consensus 122 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~----~~~~~----- 190 (507)
||+++|++++|++|.++.+++.++++.++++++|+++.....+....... ....++.... .. .....
T Consensus 95 A~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (560)
T PRK08751 95 GVLRAGLTVVNVNPLYTPRELKHQLIDSGASVLVVIDNFGTTVQQVIADT--PVKQVITTGLGDMLGFPKAALVNFVVKY 172 (560)
T ss_pred HHHHhCeEEeccCccCCHHHHHHHHHhcCCeEEEEcchhHHHHHHHhhCC--CccEEEEechhhhcccccchhhhhhhhh
Confidence 99999999999999999999999999999999999887655444433221 1223332210 00 00000
Q ss_pred -H--Hhhc-CceEeeHHHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCC
Q 010568 191 -E--IEKY-GLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLT 266 (507)
Q Consensus 191 -~--~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~ 266 (507)
. .... ......+.+................++++++++|||||||.||+|.++|.++...+......+... ..+.
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~-~~~~ 251 (560)
T PRK08751 173 VKKLVPEYRINGAIRFREALALGRKHSMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGT-GKLE 251 (560)
T ss_pred hhccccccCCCccccHHHHHhccCCCCCCCCCCCcccEEEEEcCCCCCCCCCEEEEccHHHHHHHHHHHHhhccc-cccC
Confidence 0 0000 011233444444332222223344678999999999999999999999999988776643322110 0122
Q ss_pred C-CcEEEEecChHHHHHHHH-HHHHHHcCCEEEEecC--CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchh
Q 010568 267 S-EDVYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG--DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLL 342 (507)
Q Consensus 267 ~-~d~~l~~~pl~h~~g~~~-~~~~l~~G~~v~l~~~--~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~ 342 (507)
. .+.+++.+|++|.+++.. .+.++..|+++++... ++..+++.++++++|++.++|.++..+++..
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~---------- 321 (560)
T PRK08751 252 EGCEVVITALPLYHIFALTANGLVFMKIGGCNHLISNPRDMPGFVKELKKTRFTAFTGVNTLFNGLLNTP---------- 321 (560)
T ss_pred CCCceEEEecChHHHHHHHHhhhhHhhccceEEEecCcCCHHHHHHHHHhcceeEecChHHHHHHHHcCc----------
Confidence 2 467888899999999865 5566777877766543 8899999999999999999999998875410
Q ss_pred HHHHHHHHHHhHHhhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhCCcEEeecccccC
Q 010568 343 KKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTET 422 (507)
Q Consensus 343 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~~~v~~~YG~tE~ 422 (507)
...+.++ +++|.+++||+++++.+.+.+++.+++++++.||+||+
T Consensus 322 ---------------------------~~~~~~l--------~~lr~v~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~ 366 (560)
T PRK08751 322 ---------------------------GFDQIDF--------SSLKMTLGGGMAVQRSVAERWKQVTGLTLVEAYGLTET 366 (560)
T ss_pred ---------------------------CcCCcch--------hhheeeeeCCCCCCHHHHHHHHHHhCCeEEEeeccccC
Confidence 0111122 27899999999999999999999889999999999999
Q ss_pred ccceeccCCCCCccCCcccccccCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhc-ccCceeec-
Q 010568 423 CAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTG- 500 (507)
Q Consensus 423 ~~~~~~~~~~~~~~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~-~dgw~~TG- 500 (507)
+..++..........+++|.|++|++++|+| +++..++ .|+.|||+++|+.++.||+++++.+.+.| .+|||+||
T Consensus 367 ~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d-~~~~~~~--~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD 443 (560)
T PRK08751 367 SPAACINPLTLKEYNGSIGLPIPSTDACIKD-DAGTVLA--IGEIGELCIKGPQVMKGYWKRPEETAKVMDADGWLHTGD 443 (560)
T ss_pred CCceecccccccccCCCcCccCCCceEEEEC-CCCCCCC--CCCceEEEEecCccchhhcCChhhhhhccccCCCccccc
Confidence 8876655443334457899999999999999 7776554 45899999999999999999999999888 68999999
Q ss_pred cEEEecC
Q 010568 501 MGVWEQL 507 (507)
Q Consensus 501 lg~~d~d 507 (507)
+|++|+|
T Consensus 444 ~~~~~~~ 450 (560)
T PRK08751 444 IARMDEQ 450 (560)
T ss_pred eEEEcCC
Confidence 9999875
|
|
| >PRK13383 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-47 Score=394.18 Aligned_cols=375 Identities=19% Similarity=0.208 Sum_probs=295.6
Q ss_pred CCCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHHH
Q 010568 42 GMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGME 121 (507)
Q Consensus 42 ~~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~l 121 (507)
...++.+.|.+++.++||++|+++. + +.+||.||.++++++|++|++.|+++||+|+++++|++++++++|
T Consensus 33 ~~~~~~~~~~~~a~~~p~~~a~~~~---~------~~lTy~el~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~~~l 103 (516)
T PRK13383 33 GGTNPYTLLAVTAARWPGRTAIIDD---D------GALSYRELQRATESLARRLTRDGVAPGRAVGVMCRNGRGFVTAVF 103 (516)
T ss_pred cCCcHHHHHHHHHHHCCCCcEEEeC---C------CcEeHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHH
Confidence 3578999999999999999999854 2 359999999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCceEee
Q 010568 122 ACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYS 201 (507)
Q Consensus 122 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 201 (507)
||+++|++++|+++.++.+++..+++.++++.+|++++....+.... ..+..++...
T Consensus 104 a~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~-------~~~~~~~~~~---------------- 160 (516)
T PRK13383 104 AVGLLGADVVPISTEFRSDALAAALRAHHISTVVADNEFAERIAGAD-------DAVAVIDPAT---------------- 160 (516)
T ss_pred HHHHhCeEEEEcCccCCHHHHHHHHhcCCCCEEEEchhHHHHHHhhh-------cceEEeccch----------------
Confidence 99999999999999999999999999999999999876554433211 1122222110
Q ss_pred HHHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHH
Q 010568 202 WDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIF 281 (507)
Q Consensus 202 ~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~ 281 (507)
..... ....+...++.++++|||||||.||+|.++|.... ....... .....++..+|+++..+|++|.+
T Consensus 161 -~~~~~------~~~~p~~~~~~~~il~TSGTTG~PK~v~~s~~~~~-~~~~~~~--~~~~~~~~~~d~~~~~~pl~h~~ 230 (516)
T PRK13383 161 -AGAEE------SGGRPAVAAPGRIVLLTSGTTGKPKGVPRAPQLRS-AVGVWVT--ILDRTRLRTGSRISVAMPMFHGL 230 (516)
T ss_pred -hhhhc------CCCCCCCCCCCcEEEECCCCCCCCCeeeecchhhh-hhhhHHh--HHhhhccCCCCeEEEecCCcchh
Confidence 00000 00111234567899999999999999999997432 1111111 11123577889999999999999
Q ss_pred HHHHHHHHHHcCCEEEEecC-CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhHHhhhhc
Q 010568 282 DRAIEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKK 360 (507)
Q Consensus 282 g~~~~~~~l~~G~~v~l~~~-~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 360 (507)
++..++.++..|+++++... ++..+++.++++++|.+.++|.++..+.........
T Consensus 231 g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~----------------------- 287 (516)
T PRK13383 231 GLGMLMLTIALGGTVLTHRHFDAEAALAQASLHRADAFTAVPVVLARILELPPRVRA----------------------- 287 (516)
T ss_pred hHHHHHHHHhcCCEEEECCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHhccccccc-----------------------
Confidence 99888888999999988765 999999999999999999999999988652111000
Q ss_pred CCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhCCcEEeecccccCccceeccCCCCCccCCcc
Q 010568 361 GHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTV 440 (507)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~s~ 440 (507)
. ...+++|.+++||+++++++.+.|.+.++..+++.||+||++..+...........+++
T Consensus 288 ------------~--------~~~~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~ 347 (516)
T PRK13383 288 ------------R--------NPLPQLRVVMSSGDRLDPTLGQRFMDTYGDILYNGYGSTEVGIGALATPADLRDAPETV 347 (516)
T ss_pred ------------c--------CCCCceEEEEECCCCCCHHHHHHHHHHcCchhhhcccccccccceeccccccccCCCcc
Confidence 0 00137999999999999999999999999999999999999876655443333445789
Q ss_pred cccccCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhcccCceeec-cEEEecC
Q 010568 441 GPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG-MGVWEQL 507 (507)
Q Consensus 441 G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~dgw~~TG-lg~~d~d 507 (507)
|+|+||++++|+| ++++.. +.|+.|||+++|+.++.||++++. ..+.||||+|| +|++|+|
T Consensus 348 G~~~~~~~~~i~d-~~~~~~--~~g~~Gel~v~g~~~~~~Y~~~~~---~~~~~g~~~TGDl~~~d~~ 409 (516)
T PRK13383 348 GKPVAGCPVRILD-RNNRPV--GPRVTGRIFVGGELAGTRYTDGGG---KAVVDGMTSTGDMGYLDNA 409 (516)
T ss_pred cCCCCCcEEEEEC-CCCCCC--CCCCceEEEEecCcccccccCCch---hheecCceecceeEEEcCC
Confidence 9999999999999 777644 456999999999999999998754 33478999999 9999975
|
|
| >PLN02479 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-47 Score=399.74 Aligned_cols=405 Identities=19% Similarity=0.247 Sum_probs=302.2
Q ss_pred CCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHHHHH
Q 010568 44 ESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEAC 123 (507)
Q Consensus 44 ~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~ 123 (507)
.|+.+.|.+.+..+|+++|+++. . +.+||.||.++++++|.+|.+.|+++||+|+++++|+++++++++||
T Consensus 20 ~~~~~~~~~~~~~~p~~~a~~~~---~------~~~ty~eL~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~ 90 (567)
T PLN02479 20 LTPLWFLERAAVVHPTRKSVVHG---S------VRYTWAQTYQRCRRLASALAKRSIGPGSTVAVIAPNIPAMYEAHFGV 90 (567)
T ss_pred cCHHHHHHHHHhhCCCceEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHH
Confidence 46889999999999999999854 2 46999999999999999999999999999999999999999999999
Q ss_pred HhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCC------CCCccEEEEecCCChhhHHHHhhcCc
Q 010568 124 NALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKT------TEHLKTIVSFSKVKPEQREEIEKYGL 197 (507)
Q Consensus 124 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~~~ 197 (507)
+++|++++|+++.++.+++.++++.++++.+|++++............ ......++++................
T Consensus 91 ~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (567)
T PLN02479 91 PMAGAVVNCVNIRLNAPTIAFLLEHSKSEVVMVDQEFFTLAEEALKILAEKKKSSFKPPLLIVIGDPTCDPKSLQYALGK 170 (567)
T ss_pred HhCCcEEEEeccccCHHHHHHHHhhcCceEEEEchhhhhHHHHHHHHHhhcccccCCCceEEEecCCcCCcccccccccc
Confidence 999999999999999999999999999999999887654332221100 01122344443211000000000011
Q ss_pred eEeeHHHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecCh
Q 010568 198 AVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPL 277 (507)
Q Consensus 198 ~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl 277 (507)
....|++++..........+....+++++++|||||||.||+|.++|.++......... .+++..++++++.+|+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~-----~~~~~~~~~~~~~~p~ 245 (567)
T PLN02479 171 GAIEYEKFLETGDPEFAWKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYLMALSNAL-----IWGMNEGAVYLWTLPM 245 (567)
T ss_pred CcccHHHHHhccccccccCCCCCcccceEEEECCCCCCCCcEEEeccHHHHHHHHHHHh-----hcCCCCCCEEEEecch
Confidence 23456666654321111112223456788999999999999999999998765554222 3367888999999999
Q ss_pred HHHHHHHHHH-HHHHcCCEEEEecCCHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhHHh
Q 010568 278 AHIFDRAIEE-VFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFH 356 (507)
Q Consensus 278 ~h~~g~~~~~-~~l~~G~~v~l~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (507)
+|..++...+ ..+..|.++++...++..+++.++++++|+++++|.+++.+++.......
T Consensus 246 ~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~------------------- 306 (567)
T PLN02479 246 FHCNGWCFTWTLAALCGTNICLRQVTAKAIYSAIANYGVTHFCAAPVVLNTIVNAPKSETI------------------- 306 (567)
T ss_pred hhhhhHHHHHHHHhhcCceEeccCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhhhhhccc-------------------
Confidence 9999876644 34667777766666999999999999999999999999988653211000
Q ss_pred hhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhCCcEEeecccccCccceeccCC-----
Q 010568 357 NLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLP----- 431 (507)
Q Consensus 357 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~----- 431 (507)
. ..++++.++++|+++++.+.+.+++. +.++++.||+||+++.++....
T Consensus 307 -----------------~--------~~~~l~~~~~~G~~~~~~~~~~~~~~-~~~~~~~yG~tE~~~~~~~~~~~~~~~ 360 (567)
T PLN02479 307 -----------------L--------PLPRVVHVMTAGAAPPPSVLFAMSEK-GFRVTHTYGLSETYGPSTVCAWKPEWD 360 (567)
T ss_pred -----------------c--------cccceeEEEEcCCCCCHHHHHHHHhc-CCceecccccccccccccceecccccc
Confidence 0 01378899999999999999998875 8899999999998654443210
Q ss_pred ----C-CCccCCcccccccCce-EEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhcccCceeec-cEEE
Q 010568 432 ----N-EMSMIGTVGPPVPNVD-VCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG-MGVW 504 (507)
Q Consensus 432 ----~-~~~~~~s~G~p~pg~~-i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~dgw~~TG-lg~~ 504 (507)
. ......+.|.+.+|++ ++|+|.+++..++.+.++.|||+++|++++.|||++++.+.+.|.+|||+|| +|++
T Consensus 361 ~~~~~~~~~~~~~~g~~~~g~~~~~i~d~~~~~~~~~~g~~~GEl~v~g~~~~~GY~~~~~~t~~~~~~g~~~TGDl~~~ 440 (567)
T PLN02479 361 SLPPEEQARLNARQGVRYIGLEGLDVVDTKTMKPVPADGKTMGEIVMRGNMVMKGYLKNPKANEEAFANGWFHSGDLGVK 440 (567)
T ss_pred ccCcccccccccccCCCcCCcCceeEEcCCCCcccCCCCCCceEEEEeccchhhhhhcCcccccchhcCCceecceeEEE
Confidence 0 0111246788999986 8888833445444433468999999999999999999999999999999999 9999
Q ss_pred ecC
Q 010568 505 EQL 507 (507)
Q Consensus 505 d~d 507 (507)
|+|
T Consensus 441 ~~~ 443 (567)
T PLN02479 441 HPD 443 (567)
T ss_pred cCC
Confidence 875
|
|
| >PRK09088 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-47 Score=391.88 Aligned_cols=364 Identities=20% Similarity=0.294 Sum_probs=289.7
Q ss_pred HHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHHHHHHhcCCEE
Q 010568 51 RMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHC 130 (507)
Q Consensus 51 ~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~ 130 (507)
+.+++.+||++|+.+. ..+ +.+||.||.++++++|++|++.|+++||+|+++++|++++++++|||+++|+++
T Consensus 2 ~~~a~~~p~~~a~~~~---~~~----~~~ty~~l~~~v~~~a~~l~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~ 74 (488)
T PRK09088 2 AFHARLQPQRLAAVDL---ALG----RRWTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIY 74 (488)
T ss_pred chhhhhCCCceEEEec---CCC----cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEE
Confidence 4567889999998753 222 579999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCceEeeHHHHHhccc
Q 010568 131 VPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGE 210 (507)
Q Consensus 131 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 210 (507)
+|+++.++.+++..+++.++++++|+++...... . . ...++++.....
T Consensus 75 v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~--------~---~---------------------~~~~~~~~~~~~ 122 (488)
T PRK09088 75 VPLNWRLSASELDALLQDAEPRLLLGDDAVAAGR--------T---D---------------------VEDLAAFIASAD 122 (488)
T ss_pred EeeCccCCHHHHHHHHHhCCCCEEEEcchhhccc--------c---c---------------------ccchhhhhhhcc
Confidence 9999999999999999999999999986532210 0 0 011222221111
Q ss_pred c-CCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHH-HHH
Q 010568 211 N-KQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAI-EEV 288 (507)
Q Consensus 211 ~-~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~-~~~ 288 (507)
. ..........+++++++|||||||.||+|.++|.++...+..+.... ....+|++++.+|++|.+++.. +..
T Consensus 123 ~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~~~~g~~~~~~~ 197 (488)
T PRK09088 123 ALEPADTPSIPPERVSLILFTSGTSGQPKGVMLSERNLQQTAHNFGVLG-----RVDAHSSFLCDAPMFHIIGLITSVRP 197 (488)
T ss_pred ccccccCCCCCCCCceEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhh-----CCCCCcEEEEecchHHHHHHHHHHHH
Confidence 1 11112234568899999999999999999999999988776654332 5678999999999999999876 666
Q ss_pred HHHcCCEEEEecC-CHHHHHHHhh--hhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhHHhhhhcCCCCC
Q 010568 289 FISNGAAIGFWRG-DVKLLLEDIG--ELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHV 365 (507)
Q Consensus 289 ~l~~G~~v~l~~~-~~~~~~~~i~--~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 365 (507)
++..|+++++.+. ++..++..+. ++++|+++++|.+++.+.....
T Consensus 198 ~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~P~~~~~l~~~~~-------------------------------- 245 (488)
T PRK09088 198 VLAVGGSILVSNGFEPKRTLGRLGDPALGITHYFCVPQMAQAFRAQPG-------------------------------- 245 (488)
T ss_pred HHhcCCEEEEcCCCCHHHHHHHHHhhccCCcEEeeHHHHHHHHHhCcC--------------------------------
Confidence 7999999988766 7888888886 4899999999999988754110
Q ss_pred CCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhCCcEEeecccccCccceeccCCC--CCccCCccccc
Q 010568 366 EASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPN--EMSMIGTVGPP 443 (507)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~--~~~~~~s~G~p 443 (507)
....++ +++|.+++||++++....+.+.+. ++++++.||+||++++....... ....++++|.|
T Consensus 246 -----~~~~~~--------~~l~~~~~gG~~~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~~ 311 (488)
T PRK09088 246 -----FDAAAL--------RHLTALFTGGAPHAAEDILGWLDD-GIPMVDGFGMSEAGTVFGMSVDCDVIRAKAGAAGIP 311 (488)
T ss_pred -----cCcccc--------ccceEEEecCCCCCHHHHHHHHHh-CCceeeeecccccccccccCCCcccccccCCccccC
Confidence 000001 379999999999999988877764 89999999999998755432221 12345789999
Q ss_pred ccCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhc-ccCceeec-cEEEecC
Q 010568 444 VPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTG-MGVWEQL 507 (507)
Q Consensus 444 ~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~-~dgw~~TG-lg~~d~d 507 (507)
+|+++++|+| +++..++ .|+.|||+|+|++++.||+++++.+++.| .+|||+|| +|++|+|
T Consensus 312 ~~~~~~~i~d-~~~~~~~--~g~~Gel~v~~~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~ 374 (488)
T PRK09088 312 TPTVQTRVVD-DQGNDCP--AGVPGELLLRGPNLSPGYWRRPQATARAFTGDGWFRTGDIARRDAD 374 (488)
T ss_pred CCCcEEEEEC-CCCCCCc--CCCceEEEEECCccchhhcCChhhhhhhhcCCCCeeecceEEEcCC
Confidence 9999999999 7776554 45899999999999999999999998888 68999999 9999875
|
|
| >PRK08974 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-46 Score=394.26 Aligned_cols=404 Identities=21% Similarity=0.302 Sum_probs=308.4
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHH-CCCCCCCEEEEEeCCchhhHHHHH
Q 010568 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRT-CGVEERGKCGIYGVNCPEWIIGME 121 (507)
Q Consensus 43 ~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~-~gv~~gd~V~i~~~n~~~~~~~~l 121 (507)
+.++.++|+++++++|+++|+++. + +.+||.||.++++++|.+|.+ .|+++|++|+++++|++++++++|
T Consensus 22 ~~~l~~~l~~~a~~~p~~~a~~~~---~------~~lTy~~l~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~l 92 (560)
T PRK08974 22 YQSLVDMFEQAVARYADQPAFINM---G------EVMTFRKLEERSRAFAAYLQNGLGLKKGDRVALMMPNLLQYPIALF 92 (560)
T ss_pred cccHHHHHHHHHHhCCCCceEEEC---C------ccccHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHH
Confidence 568999999999999999999854 2 469999999999999999985 899999999999999999999999
Q ss_pred HHHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCCh--hhHH---------
Q 010568 122 ACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKP--EQRE--------- 190 (507)
Q Consensus 122 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~--------- 190 (507)
||+++|++++|++|..+.+++.++++.++++.++++.+....+.+.... ...+.++....... ....
T Consensus 93 A~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (560)
T PRK08974 93 GILRAGMIVVNVNPLYTPRELEHQLNDSGAKAIVIVSNFAHTLEKVVFK--TPVKHVILTRMGDQLSTAKGTLVNFVVKY 170 (560)
T ss_pred HHHHcCcEEeccCccCCHHHHHHHHHhcCceEEEEeccccHHHHHHhhh--cCcceEEEecccccccccccccccchhhh
Confidence 9999999999999999999999999999999999987654433332211 11222221110000 0000
Q ss_pred ---HHhh-cCceEeeHHHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCC
Q 010568 191 ---EIEK-YGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLT 266 (507)
Q Consensus 191 ---~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~ 266 (507)
.... ......++.+.................+++++++|||||||.||+|.++|.++..++......+. .....
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~--~~~~~ 248 (560)
T PRK08974 171 IKRLVPKYHLPDAISFRSALHKGRRMQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYG--PLLHP 248 (560)
T ss_pred cccccccccCCCcccHHHHhhccCCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEchHHHHHHHHHHHHhhc--cccCC
Confidence 0000 00011222333322211111222346789999999999999999999999999887655332221 11234
Q ss_pred CCcEEEEecChHHHHHHHH-HHHHHHcCCEEEEecC--CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhH
Q 010568 267 SEDVYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG--DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLK 343 (507)
Q Consensus 267 ~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~v~l~~~--~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~ 343 (507)
..+.++..+|++|.+++.. .+.++..|+++++... ++..+++.++++++|++.++|.+++.+.....
T Consensus 249 ~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~---------- 318 (560)
T PRK08974 249 GKELVVTALPLYHIFALTVNCLLFIELGGQNLLITNPRDIPGFVKELKKYPFTAITGVNTLFNALLNNEE---------- 318 (560)
T ss_pred CccEEEEeCcHHHHHHHHHHHHHHhhcCCeEEEecCccCHHHHHHHHHhcCcceEcCcHHHHHHHHhCcC----------
Confidence 5678889999999998765 5667888988777643 88899999999999999999999998864210
Q ss_pred HHHHHHHHHhHHhhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhCCcEEeecccccCc
Q 010568 344 KTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETC 423 (507)
Q Consensus 344 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~~~v~~~YG~tE~~ 423 (507)
....++ +++|.+++||+++++.+.+.|++.+|.++++.||+||++
T Consensus 319 ---------------------------~~~~~~--------~~lr~~~~gg~~~~~~~~~~~~~~~g~~~~~~YG~tE~~ 363 (560)
T PRK08974 319 ---------------------------FQELDF--------SSLKLSVGGGMAVQQAVAERWVKLTGQYLLEGYGLTECS 363 (560)
T ss_pred ---------------------------cccCCc--------cceeEEEecCccCCHHHHHHHHHHhCCcEEeeecccccC
Confidence 000001 379999999999999999999998899999999999999
Q ss_pred cceeccCCCCCccCCcccccccCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhcccCceeec-cE
Q 010568 424 AGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG-MG 502 (507)
Q Consensus 424 ~~~~~~~~~~~~~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~dgw~~TG-lg 502 (507)
..++.+..+.....+++|.|+||++++|+| +++..++ .|+.|||+++|+.++.||+++++.+...|.+|||+|| ++
T Consensus 364 ~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~~~~--~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~ 440 (560)
T PRK08974 364 PLVSVNPYDLDYYSGSIGLPVPSTEIKLVD-DDGNEVP--PGEPGELWVKGPQVMLGYWQRPEATDEVIKDGWLATGDIA 440 (560)
T ss_pred ceeeccCCCCcccCCccccCcCCCEEEEEC-CCCCCCC--CCCceEEEEecCCcchhhcCChhhhhhhhhcCCcccCCEE
Confidence 877766554444458999999999999999 7776554 4589999999999999999999999988889999999 99
Q ss_pred EEecC
Q 010568 503 VWEQL 507 (507)
Q Consensus 503 ~~d~d 507 (507)
++|+|
T Consensus 441 ~~~~~ 445 (560)
T PRK08974 441 VMDEE 445 (560)
T ss_pred EEcCC
Confidence 99864
|
|
| >PRK13388 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-47 Score=394.85 Aligned_cols=375 Identities=19% Similarity=0.210 Sum_probs=292.5
Q ss_pred CCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCC-CCCCEEEEEeCCchhhHHHHHH
Q 010568 44 ESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGV-EERGKCGIYGVNCPEWIIGMEA 122 (507)
Q Consensus 44 ~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv-~~gd~V~i~~~n~~~~~~~~lA 122 (507)
.|+.++|..++ .|+++|+++. + ..+||.||.++++++|+.|.+.|+ ++||+|+++++|+++++++++|
T Consensus 3 ~~~~~~l~~~~--~p~~~Al~~~---~------~~lTy~el~~~~~~la~~L~~~g~~~~~~~V~i~~~n~~~~v~~~lA 71 (540)
T PRK13388 3 DTIAQLLRDRA--GDDTIAVRYG---D------RTWTWREVLAEAAARAAALIALADPDRPLHVGVLLGNTPEMLFWLAA 71 (540)
T ss_pred hhHHHHHHhhc--cCCceEEEEC---C------ceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCcHHHHHHHH
Confidence 57889998764 7999999864 2 469999999999999999999999 8999999999999999999999
Q ss_pred HHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCceEeeH
Q 010568 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSW 202 (507)
Q Consensus 123 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 202 (507)
|+++|++++|++|.++.+++..+++.++++++|++.+....+.+.. .+.++ ++.++.. .+
T Consensus 72 ~~~~Ga~~v~l~p~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~---~~~~~-~i~~~~~----------------~~ 131 (540)
T PRK13388 72 AALGGYVLVGLNTTRRGAALAADIRRADCQLLVTDAEHRPLLDGLD---LPGVR-VLDVDTP----------------AY 131 (540)
T ss_pred HHhCCCEEEEecccCChHHHHHHHHhcCCCEEEEChhhhHHHHhhc---ccCce-EEEccch----------------hh
Confidence 9999999999999999999999999999999999877655443321 12222 2332211 23
Q ss_pred HHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHH
Q 010568 203 DEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282 (507)
Q Consensus 203 ~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g 282 (507)
.+++..... ..+.....++++++++|||||||.||+|.++|.++...+..+...+ ++..+|++++.+|++|.++
T Consensus 132 ~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~ 205 (540)
T PRK13388 132 AELVAAAGA-LTPHREVDAMDPFMLIFTSGTTGAPKAVRCSHGRLAFAGRALTERF-----GLTRDDVCYVSMPLFHSNA 205 (540)
T ss_pred hhhhccccC-cCCCCCCCCCCeEEEEECCCCCCCCCEEEecHHHHHHHHHHHHHHh-----CCCCCCEEEEeeCchhhcc
Confidence 333322111 1112234679999999999999999999999999988777754444 7888999999999999998
Q ss_pred HHH-HHHHHHcCCEEEEecC-CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhHHhhhhc
Q 010568 283 RAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKK 360 (507)
Q Consensus 283 ~~~-~~~~l~~G~~v~l~~~-~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 360 (507)
+.. ++.++..|+++++.+. ++..+++.++++++|++..+|.++..++....
T Consensus 206 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~p~~l~~l~~~~~--------------------------- 258 (540)
T PRK13388 206 VMAGWAPAVASGAAVALPAKFSASGFLDDVRRYGATYFNYVGKPLAYILATPE--------------------------- 258 (540)
T ss_pred hHHHHHHHHHcCcEEEECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCCC---------------------------
Confidence 876 4557999999998775 89999999999999999999999888754100
Q ss_pred CCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhCCcEEeecccccCccceeccCCCCCccCCcc
Q 010568 361 GHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTV 440 (507)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~s~ 440 (507)
.+ .. ...+++.+ + |+++++.....+.+.++.++++.||+||++.++.... ....+++
T Consensus 259 -------~~--~~---------~~~~l~~~-~-G~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~---~~~~~~v 315 (540)
T PRK13388 259 -------RP--DD---------ADNPLRVA-F-GNEASPRDIAEFSRRFGCQVEDGYGSSEGAVIVVREP---GTPPGSI 315 (540)
T ss_pred -------Cc--cc---------cccceEEE-E-CCCCCHHHHHHHHHHhCCceecccccccccceeecCC---CCCCCCC
Confidence 00 00 00256643 3 5567888888888888999999999999987665432 1234789
Q ss_pred cccccCceEE-----------EeecCCCccccCCCCCCceEEEe-cCCccccccCChhhhhhhcccCceeec-cEEEecC
Q 010568 441 GPPVPNVDVC-----------LESVPEMEYDALSSTPRGEVCVK-GSTVFSGYYKREDLTKEVMVDGWFHTG-MGVWEQL 507 (507)
Q Consensus 441 G~p~pg~~i~-----------ivd~~~~~~~~~~~g~~Gel~v~-g~~v~~gY~~~~~~~~~~~~dgw~~TG-lg~~d~d 507 (507)
|+|++|+++. ++| ++|.... ..++.|||+++ |++++.||+++++.+.+.|.+|||+|| +|++|+|
T Consensus 316 G~p~~g~~i~~~~~~~~~~~~~~d-~~g~~~~-~~~~~GEl~v~~g~~~~~gY~~~~~~t~~~~~~g~~~TGD~~~~~~d 393 (540)
T PRK13388 316 GRGAPGVAIYNPETLTECAVARFD-AHGALLN-ADEAIGELVNTAGAGFFEGYYNNPEATAERMRHGMYWSGDLAYRDAD 393 (540)
T ss_pred CCCCCCcEEEcCCCCccccceecc-Ccccccc-CCCcceEEEEecCCcccccccCChHHHHHHhhcCceeccceEEEcCC
Confidence 9999997653 333 3333221 23578999998 999999999999999999999999999 9999875
|
|
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-47 Score=473.97 Aligned_cols=385 Identities=18% Similarity=0.220 Sum_probs=312.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCc
Q 010568 34 DGFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNC 113 (507)
Q Consensus 34 ~~~~~~~~~~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~ 113 (507)
+......+...++.++|+++++++||++|+++. + +.+||+||.++++++|+.|++.|+++|++|+|+++++
T Consensus 1993 ~~~~~~~~~~~~~~~~~~~~a~~~p~~~A~~~~---~------~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s 2063 (5163)
T PRK12316 1993 DRTPEAYPRGPGVHQRIAEQAARAPEAIAVVFG---D------QHLSYAELDSRANRLAHRLRARGVGPEVRVAIAAERS 2063 (5163)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHhCCCCeEEEcC---C------CeEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCC
Confidence 333444455678999999999999999999865 3 3699999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHh
Q 010568 114 PEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIE 193 (507)
Q Consensus 114 ~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 193 (507)
+++++++|||+++|++++||+|.++.+++.++++.++++++|++.+....+... .... .+.++..
T Consensus 2064 ~~~~~~~lAil~aGa~~vpld~~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~-----~~~~-~~~~~~~--------- 2128 (5163)
T PRK12316 2064 FELVVALLAVLKAGGAYVPLDPNYPAERLAYMLEDSGAALLLTQRHLLERLPLP-----AGVA-RLPLDRD--------- 2128 (5163)
T ss_pred HHHHHHHHHHHhhceEEeecCCCCCHHHHHHHHHhcCCCEEEeChhhhhhcccc-----cccc-eEeccch---------
Confidence 999999999999999999999999999999999999999999987654332110 1111 1111110
Q ss_pred hcCceEeeHHHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEE
Q 010568 194 KYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVS 273 (507)
Q Consensus 194 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~ 273 (507)
..+.... ...+.....++++++|+|||||||.||||+++|.++.+.+......+ +++.+|+++.
T Consensus 2129 ---------~~~~~~~--~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-----~~~~~d~~l~ 2192 (5163)
T PRK12316 2129 ---------AEWADYP--DTAPAVQLAGENLAYVIYTSGSTGLPKGVAVSHGALVAHCQAAGERY-----ELSPADCELQ 2192 (5163)
T ss_pred ---------hhhhccC--ccCCCCCCCCCCeEEEEeCccCCCCCCEeEEccHHHHHHHHHHHHhc-----CCCCcceEEE
Confidence 0011111 11122345789999999999999999999999999999998855544 7889999999
Q ss_pred ecChHHHHHHHHHHHHHHcCCEEEEecC---CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHH
Q 010568 274 YLPLAHIFDRAIEEVFISNGAAIGFWRG---DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIA 350 (507)
Q Consensus 274 ~~pl~h~~g~~~~~~~l~~G~~v~l~~~---~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 350 (507)
++|++|..++..++.+|+.|+++++.+. ++..+++.|+++++|+++++|++++.+........
T Consensus 2193 ~~~~~fd~~~~~~~~~L~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~-------------- 2258 (5163)
T PRK12316 2193 FMSFSFDGAHEQWFHPLLNGARVLIRDDELWDPEQLYDEMERHGVTILDFPPVYLQQLAEHAERDG-------------- 2258 (5163)
T ss_pred ecCchHHHHHHHHHHHHhCCCEEEeCCcccCCHHHHHHHHHHcCCeEEEcChHHHHHHHhhhhccc--------------
Confidence 9999999888889999999999987653 78999999999999999999999998865321100
Q ss_pred HHhHHhhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhh-CCcEEeecccccCccceecc
Q 010568 351 YSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVS 429 (507)
Q Consensus 351 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~-~~~v~~~YG~tE~~~~~~~~ 429 (507)
...+||.+++||+++++++.+.|.+.+ +..++|.||+||++..++..
T Consensus 2259 --------------------------------~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~ 2306 (5163)
T PRK12316 2259 --------------------------------RPPAVRVYCFGGEAVPAASLRLAWEALRPVYLFNGYGPTEAVVTPLLW 2306 (5163)
T ss_pred --------------------------------CCcceeEEEEecccCCHHHHHHHHHhCCCcEEEECccchhheeeeeee
Confidence 002799999999999999999998766 57899999999998766544
Q ss_pred CCCCCc----cCCcccccccCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhc-c-------cCce
Q 010568 430 LPNEMS----MIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-V-------DGWF 497 (507)
Q Consensus 430 ~~~~~~----~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~-~-------dgw~ 497 (507)
...... ...++|+|++|++++|+| ++++.+| .|+.|||+|+|+++++||+|+|+.|+++| . ++||
T Consensus 2307 ~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~vp--~g~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~~~~~~~~~~y 2383 (5163)
T PRK12316 2307 KCRPQDPCGAAYVPIGRALGNRRAYILD-ADLNLLA--PGMAGELYLGGEGLARGYLNRPGLTAERFVPDPFSASGERLY 2383 (5163)
T ss_pred ecccccccCCCcCCcccccCCCEEEEEC-CCCCCCC--CCCeeEEEecchhhcccccCChhhhhhhccCCCCCCCCCeeE
Confidence 332211 125799999999999999 7776555 45999999999999999999999999999 2 2499
Q ss_pred eec-cEEEecC
Q 010568 498 HTG-MGVWEQL 507 (507)
Q Consensus 498 ~TG-lg~~d~d 507 (507)
+|| +|++|+|
T Consensus 2384 rTGDl~~~~~d 2394 (5163)
T PRK12316 2384 RTGDLARYRAD 2394 (5163)
T ss_pred ecccEEEEcCC
Confidence 999 9999976
|
|
| >PRK06710 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-46 Score=394.89 Aligned_cols=403 Identities=24% Similarity=0.388 Sum_probs=303.4
Q ss_pred CCCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHHH
Q 010568 42 GMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGME 121 (507)
Q Consensus 42 ~~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~l 121 (507)
..+++.++|.+.+.++||++|+++. + +.+||.||..++.++|++|.+.|+++||+|+++++|++++++++|
T Consensus 22 ~~~~~~~~~~~~a~~~p~~~a~~~~---~------~~~ty~eL~~~~~~la~~L~~~gv~~gd~V~i~~~~~~~~~~~~l 92 (563)
T PRK06710 22 DIQPLHKYVEQMASRYPEKKALHFL---G------KDITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYY 92 (563)
T ss_pred CcccHHHHHHHHHHHCCCceEEEec---C------eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHH
Confidence 4478999999999999999999864 3 469999999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCC----hhhHH--HHhh-
Q 010568 122 ACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVK----PEQRE--EIEK- 194 (507)
Q Consensus 122 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~--~~~~- 194 (507)
||+++|++++|++|..+.+++..+++.++++.+++++............ .....++...... +.... ....
T Consensus 93 A~~~~G~~~vpi~p~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (563)
T PRK06710 93 GTLLAGGIVVQTNPLYTERELEYQLHDSGAKVILCLDLVFPRVTNVQSA--TKIEHVIVTRIADFLPFPKNLLYPFVQKK 170 (563)
T ss_pred HHHHcCeEEeccCcccCHHHHHHHHhccCCeEEEEeccchhhhhccchh--hccceeEEeccccccccccccccchhhcc
Confidence 9999999999999999999999999999999999988654433322211 1122222211000 00000 0000
Q ss_pred ---------cCceEeeHHHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccC
Q 010568 195 ---------YGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKL 265 (507)
Q Consensus 195 ---------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~ 265 (507)
.......|+.+.... ...........+++++++|||||||.||+|.++|.++..+....... ....
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~----~~~~ 245 (563)
T PRK06710 171 QSNLVVKVSESETIHLWNSVEKEV-NTGVEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQW----LYNC 245 (563)
T ss_pred cccccccccccchhhhhhhhhhcc-ccccccccCCCCCEEEEEcCCCCCCCCceEEEehHHHHHHHHHHHhh----ccCC
Confidence 000001122222111 11111112235789999999999999999999999987654332111 1122
Q ss_pred -CCCcEEEEecChHHHHHHHH-HHHHHHcCCEEEEecC-CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchh
Q 010568 266 -TSEDVYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLL 342 (507)
Q Consensus 266 -~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~v~l~~~-~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~ 342 (507)
...+++++++|++|.+++.. +..++..|+++++.+. ++..+++.|+++++|++.++|+++..++....
T Consensus 246 ~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--------- 316 (563)
T PRK06710 246 KEGEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAPTIYIALLNSPL--------- 316 (563)
T ss_pred CCCCceEEEeCchHHHHHHHHHHHHHHHcCCeEEEcCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHcCCc---------
Confidence 34568899999999999865 5567899999998765 89999999999999999999999998754210
Q ss_pred HHHHHHHHHHhHHhhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhCCcEEeecccccC
Q 010568 343 KKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTET 422 (507)
Q Consensus 343 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~~~v~~~YG~tE~ 422 (507)
....++ +++|.+++||+++++++.+++++.++.++++.||+||+
T Consensus 317 ----------------------------~~~~~~--------~~lr~v~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~ 360 (563)
T PRK06710 317 ----------------------------LKEYDI--------SSIRACISGSAPLPVEVQEKFETVTGGKLVEGYGLTES 360 (563)
T ss_pred ----------------------------cccCCh--------hhhhheeeCCCcCCHHHHHHHHHhhCCCEecccccccC
Confidence 000111 27899999999999999999999889999999999999
Q ss_pred ccceeccCCCCCccCCcccccccCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhcccCceeec-c
Q 010568 423 CAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG-M 501 (507)
Q Consensus 423 ~~~~~~~~~~~~~~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~dgw~~TG-l 501 (507)
+.+...........++++|+|++++.++|+|.+++. +++.|+.|||+++|+.++.||+++++.+...|.+|||+|| +
T Consensus 361 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~--~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGD~ 438 (563)
T PRK06710 361 SPVTHSNFLWEKRVPGSIGVPWPDTEAMIMSLETGE--ALPPGEIGEIVVKGPQIMKGYWNKPEETAAVLQDGWLHTGDV 438 (563)
T ss_pred ccccccCcccccccCCccCCCCCCCeEEEEECCCCc--cCCCCCceEEEEecCccchhhhCChHHHhhhcccCcccccce
Confidence 876554433333345789999999999999833333 3445689999999999999999999999999999999999 9
Q ss_pred EEEecC
Q 010568 502 GVWEQL 507 (507)
Q Consensus 502 g~~d~d 507 (507)
+++|+|
T Consensus 439 ~~~~~~ 444 (563)
T PRK06710 439 GYMDED 444 (563)
T ss_pred EEEcCC
Confidence 999875
|
|
| >PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-47 Score=397.63 Aligned_cols=371 Identities=18% Similarity=0.272 Sum_probs=278.8
Q ss_pred CHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHHHHHH
Q 010568 45 SCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACN 124 (507)
Q Consensus 45 tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~ 124 (507)
-+.+.|+++++++|+++|+++. +++.++++||+||.++++++|++|.++ ++||+|+|+++|+++++++++||+
T Consensus 3 ~~~~~l~~~~~~~~~~~a~~~~-----~~~~~~~~ty~el~~~~~~lA~~L~~~--~~g~~V~l~~~~~~e~~~~~la~~ 75 (525)
T PRK05851 3 ELAAALSDAMTASGRDLVVLDR-----ESGLWRRHPWPEVHGRAENVAARLLDR--DRPGAVGLVGEPTVELVAAIQGAW 75 (525)
T ss_pred hHHHHHHHHhcCCCCceEEeCC-----CCCcceeecHHHHHHHHHHHHHHHHhc--CCCCeEEEEcCCCHHHHHHHHHHH
Confidence 3889999999999999999854 333578899999999999999999988 799999999999999999999999
Q ss_pred hcCCEEeeccCC--------CChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcC
Q 010568 125 ALGLHCVPLYDT--------LGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYG 196 (507)
Q Consensus 125 ~~G~~~v~l~~~--------~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 196 (507)
++|++++ +++. ...+++.++++.++++++|++......+..... . +.+.+
T Consensus 76 ~~G~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~----~----~~~~~------------- 133 (525)
T PRK05851 76 LAGAAVS-ILPGPVRGADDGRWADATLTRFAGIGVRTVLSHGSHLERLRAVDS----S----VTVHD------------- 133 (525)
T ss_pred HcCCCCc-CCCCCCCccchhhHHHHHHHHHHhcCCCEEEeCHHHHHHHHHhhc----c----ccccc-------------
Confidence 9999865 4432 123455667899999999998765443322110 0 00000
Q ss_pred ceEeeHHHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCC-CCcEEEEec
Q 010568 197 LAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLT-SEDVYVSYL 275 (507)
Q Consensus 197 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~-~~d~~l~~~ 275 (507)
+....... .........++++++|+|||||||.||+|.++|.++...+..+...+ ++. .+|++++++
T Consensus 134 -----~~~~~~~~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~~d~~l~~~ 201 (525)
T PRK05851 134 -----LATAAHTN--RSASLTPPDSGGPAVLQGTAGSTGTPRTAILSPGAVLSNLRGLNARV-----GLDAATDVGCSWL 201 (525)
T ss_pred -----cccccccc--ccccCCCCCCCCeEEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHh-----CCCCCCCeEEEcC
Confidence 00000000 00011224678999999999999999999999999999888755444 666 889999999
Q ss_pred ChHHHHHHHHHHHHHHcCCEEEEecC-----CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHH
Q 010568 276 PLAHIFDRAIEEVFISNGAAIGFWRG-----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIA 350 (507)
Q Consensus 276 pl~h~~g~~~~~~~l~~G~~v~l~~~-----~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 350 (507)
|++|.+++..++.+++.|+++++.+. ++..+++.+.++++|++.. |.++..++.......
T Consensus 202 pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~-p~~~~~~l~~~~~~~-------------- 266 (525)
T PRK05851 202 PLYHDMGLAFLLTAALAGAPLWLAPTTAFSASPFRWLSWLSDSRATLTAA-PNFAYNLIGKYARRV-------------- 266 (525)
T ss_pred CCccCccHHHHHHHHHcCCeEEEcCHHHHHHCHHHHHHHHHHhCCeEEeC-CcHHHHHHHHhhccc--------------
Confidence 99999999888889999999998762 5788999999999998754 555444332111000
Q ss_pred HHhHHhhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHh---hCC---cEEeecccccCcc
Q 010568 351 YSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVV---ACA---HVLQGYGLTETCA 424 (507)
Q Consensus 351 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~---~~~---~v~~~YG~tE~~~ 424 (507)
...++ +++|.+++||+++++++.+.|.+. +|. .+++.||+||++.
T Consensus 267 ---------------------~~~~l--------~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~ 317 (525)
T PRK05851 267 ---------------------SDVDL--------GALRVALNGGEPVDCDGFERFATAMAPFGFDAGAAAPSYGLAESTC 317 (525)
T ss_pred ---------------------cCCCH--------HHhheeEeccccCCHHHHHHHHHHHhhcCCChhhcccccchhhhce
Confidence 00011 278999999999999999988764 344 4999999999987
Q ss_pred ceeccCCCC--------------CccCCcccccccCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhh
Q 010568 425 GTFVSLPNE--------------MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKE 490 (507)
Q Consensus 425 ~~~~~~~~~--------------~~~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~ 490 (507)
.++...+.. ....+++|+|+||++++|+| +++. .+++.|+.|||+|+|++++.|||++++.+
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d-~~~~-~~~~~g~~GEl~v~g~~~~~GY~~~~~~~-- 393 (525)
T PRK05851 318 AVTVPVPGIGLRVDEVTTDDGSGARRHAVLGNPIPGMEVRISP-GDGA-AGVAGREIGEIEIRGASMMSGYLGQAPID-- 393 (525)
T ss_pred EEEecCCCCCceeeeeccccCcccceeeeecCCCCCcEEEEEC-CCCC-ccCCCCCeEEEEEecCchhhccccCCccC--
Confidence 665433211 12336899999999999999 6654 23445699999999999999999998643
Q ss_pred hcccCceeec-cEEEec
Q 010568 491 VMVDGWFHTG-MGVWEQ 506 (507)
Q Consensus 491 ~~~dgw~~TG-lg~~d~ 506 (507)
.+|||+|| +|++|+
T Consensus 394 --~~~~~~TGDl~~~~~ 408 (525)
T PRK05851 394 --PDDWFPTGDLGYLVD 408 (525)
T ss_pred --CCCceeccceEEEEC
Confidence 47899999 999974
|
|
| >PRK06178 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-46 Score=392.72 Aligned_cols=404 Identities=20% Similarity=0.285 Sum_probs=306.4
Q ss_pred CCCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHHH
Q 010568 42 GMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGME 121 (507)
Q Consensus 42 ~~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~l 121 (507)
...++.++|+++++.+||++|+.+. + +.+||.||.+++.++|++|.+.|+++|++|+++++|+++++++++
T Consensus 31 ~~~~l~~~l~~~a~~~p~~~al~~~---~------~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~l 101 (567)
T PRK06178 31 GERPLTEYLRAWARERPQRPAIIFY---G------HVITYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFF 101 (567)
T ss_pred CcccHHHHHHHHHHHCCCceEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCcHHHHHHH
Confidence 3468999999999999999999865 3 369999999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCC--hhhHH-----HHhh
Q 010568 122 ACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVK--PEQRE-----EIEK 194 (507)
Q Consensus 122 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~-----~~~~ 194 (507)
||+++|++++|++|..+..++.++++.++++++++++.....+.+..... .++.++...... +.... ....
T Consensus 102 A~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~ii~~~~~~~~l~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 179 (567)
T PRK06178 102 GILKLGAVHVPVSPLFREHELSYELNDAGAEVLLALDQLAPVVEQVRAET--SLRHVIVTSLADVLPAEPTLPLPDSLRA 179 (567)
T ss_pred HHHHhCeEEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHhhccC--CcceEEEecccccccccccccccccccc
Confidence 99999999999999999999999999999999999988766555443322 233333332111 00000 0000
Q ss_pred cCceEeeHHHHHhcccc--CCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEE
Q 010568 195 YGLAVYSWDEFLQLGEN--KQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYV 272 (507)
Q Consensus 195 ~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l 272 (507)
.......+.++...... .........++++++++|||||||.||+|.++|.+++........ ....+...|+++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~----~~~~~~~~d~~l 255 (567)
T PRK06178 180 PRLAAAGAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYA----VAVVGGEDSVFL 255 (567)
T ss_pred ccccccccccHHHHhhccccccccCCCCCCCeEEEEeCCCCCCCCceEEeccHHHHHHHHHHHH----HhccCCCCcEEE
Confidence 00001112222221111 111223356789999999999999999999999999876655322 123578899999
Q ss_pred EecChHHHHHHHH-HHHHHHcCCEEEEecC-CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHH
Q 010568 273 SYLPLAHIFDRAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIA 350 (507)
Q Consensus 273 ~~~pl~h~~g~~~-~~~~l~~G~~v~l~~~-~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 350 (507)
+.+|++|.+|+.. ++.+++.|+++++.+. ++..++..++++++|.+.++|..+..++....
T Consensus 256 ~~~p~~~~~g~~~~~~~~l~~G~~~~l~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~l~~~~~----------------- 318 (567)
T PRK06178 256 SFLPEFWIAGENFGLLFPLFSGATLVLLARWDAVAFMAAVERYRVTRTVMLVDNAVELMDHPR----------------- 318 (567)
T ss_pred EecchHHHHHHHHHHHHHHHcCceEEEeCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCC-----------------
Confidence 9999999999864 7778999999999876 99999999999999999999999887754100
Q ss_pred HHhHHhhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEE--EcCCCCCHHHHHHHHHhhCCcEEe-ecccccCcccee
Q 010568 351 YSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLIL--SGAAPLTPHVETFLRVVACAHVLQ-GYGLTETCAGTF 427 (507)
Q Consensus 351 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~--~~G~~l~~~l~~~~~~~~~~~v~~-~YG~tE~~~~~~ 427 (507)
....++ ++++.++ ++++.+++++.+.+++.+|..++. .||+||++..+.
T Consensus 319 --------------------~~~~~l--------~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~YG~tE~~~~~~ 370 (567)
T PRK06178 319 --------------------FAEYDL--------SSLRQVRVVSFVKKLNPDYRQRWRALTGSVLAEAAWGMTETHTCDT 370 (567)
T ss_pred --------------------CCCCCc--------chheeeeeccccccCCHHHHHHHHHHhCCcccccccccccccccce
Confidence 000111 1455543 456899999999999988877665 799999986654
Q ss_pred ccCCC--C----CccCCcccccccCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhcccCceeec-
Q 010568 428 VSLPN--E----MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG- 500 (507)
Q Consensus 428 ~~~~~--~----~~~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~dgw~~TG- 500 (507)
..... . ...++++|+|+||++++|+|.++++.+ +.|+.|||+++|++++.||+++++.+...|.||||+||
T Consensus 371 ~~~~~~~~~~~~~~~~~~vG~p~~g~~v~v~d~~~~~~~--~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~dg~~~TGD 448 (567)
T PRK06178 371 FTAGFQDDDFDLLSQPVFVGLPVPGTEFKICDFETGELL--PLGAEGEIVVRTPSLLKGYWNKPEATAEALRDGWLHTGD 448 (567)
T ss_pred eccccccCccccccCCcccccccCCcEEEEEcCCCCCcC--CCCCceEEEEECCcccccccCChhhhhhcccCCceeecc
Confidence 43211 1 123467999999999999983334444 45689999999999999999999999998999999999
Q ss_pred cEEEecC
Q 010568 501 MGVWEQL 507 (507)
Q Consensus 501 lg~~d~d 507 (507)
+|++|+|
T Consensus 449 l~~~~~~ 455 (567)
T PRK06178 449 IGKIDEQ 455 (567)
T ss_pred eEEEecC
Confidence 9999865
|
|
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-47 Score=463.18 Aligned_cols=382 Identities=18% Similarity=0.201 Sum_probs=311.7
Q ss_pred CCCCCCCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhH
Q 010568 38 APIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWI 117 (507)
Q Consensus 38 ~~~~~~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~ 117 (507)
...+...++.++|+++++++||++|+++. + +.+||+||.++++++|+.|++.|+++|++|+++++++++++
T Consensus 1568 ~~~~~~~~~~~~~~~~a~~~p~~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~~~~V~l~~~~s~~~v 1638 (3956)
T PRK12467 1568 TGYPLARLVHQLIEDQAAATPEAVALVFG---E------QELTYGELNRRANRLAHRLIALGVGPEVLVGIAVERSLEMV 1638 (3956)
T ss_pred cCCCccccHHHHHHHHHHhCCCCeEEEeC---C------cEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCCHHHH
Confidence 33445578999999999999999999865 3 46999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCc
Q 010568 118 IGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGL 197 (507)
Q Consensus 118 ~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 197 (507)
+++|||+++|++++|++|.++.+++.++++.++++++|++......+... ... .++.++...
T Consensus 1639 v~~lavlkaG~~~vpldp~~p~~rl~~il~~~~~~~~l~~~~~~~~~~~~-----~~~-~~~~~~~~~------------ 1700 (3956)
T PRK12467 1639 VGLLAILKAGGAYVPLDPEYPRERLAYMIEDSGIELLLTQSHLQARLPLP-----DGL-RSLVLDQED------------ 1700 (3956)
T ss_pred HHHHHhhccCceeeecCCCCCHHHHHHHHHhCCCCEEEeChhhhhhCccc-----cCC-cEEEecccc------------
Confidence 99999999999999999999999999999999999999987643332110 111 222222110
Q ss_pred eEeeHHHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecCh
Q 010568 198 AVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPL 277 (507)
Q Consensus 198 ~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl 277 (507)
++.... ..........++++++|+|||||||.||||+++|.++.+.+.+....+ ++..+|++++..|+
T Consensus 1701 ------~~~~~~-~~~~~~~~~~~~~~ayiiyTSGSTG~PKGV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~ 1768 (3956)
T PRK12467 1701 ------DWLEGY-SDSNPAVNLAPQNLAYVIYTSGSTGRPKGAGNRHGALVNRLCATQEAY-----QLSAADVVLQFTSF 1768 (3956)
T ss_pred ------chhccC-CCCCCCCCCCCcCcEEEEECCCcCCCCCEEEEcCHHHHHHHHHHHHhc-----CCCcccEEEEecCc
Confidence 111111 111222344678999999999999999999999999999988855544 78899999999999
Q ss_pred HHHHHHHHHHHHHHcCCEEEEecC----CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHh
Q 010568 278 AHIFDRAIEEVFISNGAAIGFWRG----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSY 353 (507)
Q Consensus 278 ~h~~g~~~~~~~l~~G~~v~l~~~----~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (507)
+|..+++.++.++..|+++++.+. ++..+++.|+++++|+++++|++++.+.+.....
T Consensus 1769 ~fd~~~~~~~~~L~~G~~lvi~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~------------------ 1830 (3956)
T PRK12467 1769 AFDVSVWELFWPLINGARLVIAPPGAHRDPEQLIQLIERQQVTTLHFVPSMLQQLLQMDEQV------------------ 1830 (3956)
T ss_pred cHHHHHHHHHHHHhCCCEEEEcChhhcCCHHHHHHHHHHcCCeEEECCHHHHHHHHhhcccc------------------
Confidence 999998889999999999999763 7899999999999999999999999886521000
Q ss_pred HHhhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhh-CCcEEeecccccCccceeccCCC
Q 010568 354 KFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVSLPN 432 (507)
Q Consensus 354 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~ 432 (507)
...+++|.+++|||++++++.+.|.+.+ +..++|.||+||++..++.....
T Consensus 1831 ----------------------------~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~t~~~~~ 1882 (3956)
T PRK12467 1831 ----------------------------EHPLSLRRVVCGGEALEVEALRPWLERLPDTGLFNLYGPTETAVDVTHWTCR 1882 (3956)
T ss_pred ----------------------------ccCCCceEEEEccccCCHHHHHHHHHhCCCCeEEeCccCCcCEEeEEEEecc
Confidence 0013799999999999999999988776 47899999999998776654332
Q ss_pred ----CCccCCcccccccCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhc-c-------cCceeec
Q 010568 433 ----EMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-V-------DGWFHTG 500 (507)
Q Consensus 433 ----~~~~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~-~-------dgw~~TG 500 (507)
......++|+|++|++++|+| ++++.+|. |+.|||+|+|+++++||+|+|+.|+++| . ++||+||
T Consensus 1883 ~~~~~~~~~~~iG~p~~~~~~~vld-~~~~~vp~--G~~GEl~i~G~~v~~GYl~~p~~t~~~f~~~p~~~~~~r~yrTG 1959 (3956)
T PRK12467 1883 RKDLEGRDSVPIGQPIANLSTYILD-ASLNPVPI--GVAGELYLGGVGLARGYLNRPALTAERFVADPFGTVGSRLYRTG 1959 (3956)
T ss_pred ccccccCCCCCcccccCCCEEEEEC-CCCCCCCC--CCceEEEeccccccccccCChhhhhhhCcCCCCCCCCccceecc
Confidence 112246899999999999999 77765554 5999999999999999999999999998 2 2499999
Q ss_pred -cEEEecC
Q 010568 501 -MGVWEQL 507 (507)
Q Consensus 501 -lg~~d~d 507 (507)
+|++++|
T Consensus 1960 Dl~~~~~d 1967 (3956)
T PRK12467 1960 DLARYRAD 1967 (3956)
T ss_pred ceEEECCC
Confidence 9999876
|
|
| >TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-46 Score=390.06 Aligned_cols=373 Identities=18% Similarity=0.230 Sum_probs=300.9
Q ss_pred CHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHHHHHH
Q 010568 45 SCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACN 124 (507)
Q Consensus 45 tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~ 124 (507)
++.+.|++.+..+|+++|+... + +.+||.||.+++.++|+.|.+.|+++|++|+|+++|+.+++++++||+
T Consensus 1 ~~~~~l~~~a~~~p~~~a~~~~---~------~~~ty~el~~~~~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~ 71 (502)
T TIGR01734 1 KLIEAIQAFAETYPQTIAYRYQ---G------QELTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSI 71 (502)
T ss_pred CHHHHHHHHHHHCCCceEEEcC---C------cEEeHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeCCCHHHHHHHHHHH
Confidence 5789999999999999998754 2 469999999999999999999999999999999999999999999999
Q ss_pred hcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCceEeeHHH
Q 010568 125 ALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDE 204 (507)
Q Consensus 125 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (507)
++|++++|+++.++.+++..+++..+++.+|++........ ... ++.++ ...+
T Consensus 72 ~~G~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~--------~~~-~~~~~------------------~~~~ 124 (502)
T TIGR01734 72 KSGHAYIPVDTSIPSERIEMIIEAAGPELVIHTAELSIDAV--------GTQ-IITLS------------------ALEQ 124 (502)
T ss_pred HhCCEEeCCCCcChHHHHHHHHHhcCCCEEEeccccccccc--------CCc-eEEch------------------Hhhh
Confidence 99999999999999999999999999999999876432211 111 12111 1111
Q ss_pred HHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHH
Q 010568 205 FLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRA 284 (507)
Q Consensus 205 l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~ 284 (507)
+...... ........+++.++++|||||||.||+|.++|.++...+...... .....++++++..|++|..++.
T Consensus 125 ~~~~~~~-~~~~~~~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~-----~~~~~~~~~l~~~p~~~~~~~~ 198 (502)
T TIGR01734 125 AETSGGP-VSFDHAVKGDDNYYIIYTSGSTGNPKGVQISHDNLVSFTNWMLAD-----FPLSEGKQFLNQAPFSFDLSVM 198 (502)
T ss_pred hhhhcCC-ccccccCCCCCeEEEEECCCCCCCCCEEEEecHHHHHHHHHHHHh-----CCCCCCceEEeecCceechhHH
Confidence 1111111 111223467889999999999999999999999999888875443 3678899999999999999998
Q ss_pred HHHHHHHcCCEEEEecC----CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhHHhhhhc
Q 010568 285 IEEVFISNGAAIGFWRG----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKK 360 (507)
Q Consensus 285 ~~~~~l~~G~~v~l~~~----~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 360 (507)
.++.++..|+++++.+. ++..+++.+.+++++.+.++|.+++.++.....
T Consensus 199 ~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~p~~~~~~l~~~~~-------------------------- 252 (502)
T TIGR01734 199 DLYPCLASGGTLHCLDKDITNNFKLLFEELPKTGLNVWVSTPSFVDMCLLDPNF-------------------------- 252 (502)
T ss_pred HHHHHHHCCCEEEEcCHHHhcCHHHHHHHHHHcCCeEEEEChhHHHHHHhcccc--------------------------
Confidence 88899999999998764 789999999999999999999998776431100
Q ss_pred CCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhh-CCcEEeecccccCccceeccCCCC----Cc
Q 010568 361 GHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVSLPNE----MS 435 (507)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~----~~ 435 (507)
.. ...++++.++++|+++++++.+.+.+.+ ++.+++.||+||+++.+....... ..
T Consensus 253 -----------~~--------~~~~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~ 313 (502)
T TIGR01734 253 -----------NQ--------ENYPHLTHFLFCGEELPVKTAKALLERFPKATIYNTYGPTEATVAVTSVKITQEILDQY 313 (502)
T ss_pred -----------cc--------ccCCcccEEEEcCCcCCHHHHHHHHHHCCCcEEEeCccCCcceEEEEEEEccccccccC
Confidence 00 0013789999999999999999998887 789999999999976544332111 12
Q ss_pred cCCcccccccCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhc--cc--Cceeec-cEEEecC
Q 010568 436 MIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM--VD--GWFHTG-MGVWEQL 507 (507)
Q Consensus 436 ~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~--~d--gw~~TG-lg~~d~d 507 (507)
...++|.|+||++++|+| +++..++ .|+.|||+++|+.++.||+++++.+.+.| .+ +||+|| +|++|+|
T Consensus 314 ~~~~vg~~~~~~~~~i~~-~~~~~~~--~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~TGDlg~~~~~ 387 (502)
T TIGR01734 314 PRLPIGFAKPDMNLFIMD-EEGEPLP--EGEKGEIVIVGPSVSKGYLNNPEKTAEAFFSHEGQPAYRTGDAGTITDG 387 (502)
T ss_pred CccccccccCCCEEEEEC-CCCCCCC--CCCeeEEEEccccccccccCCcccchHhheeCCCcEEEECCCEEEEECC
Confidence 235799999999999999 7766554 45999999999999999999999998887 23 499999 9999975
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides. |
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-47 Score=467.56 Aligned_cols=384 Identities=18% Similarity=0.173 Sum_probs=314.0
Q ss_pred CCCCCCCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhH
Q 010568 38 APIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWI 117 (507)
Q Consensus 38 ~~~~~~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~ 117 (507)
.+.+...++.++|+++++++||++|++.. ++ .+||+||.++++++|+.|++.|+++|++|+|+++++++++
T Consensus 3714 ~~~~~~~~~~~~~~~~~~~~p~~~Av~~~---~~------~~tY~eL~~~~~~la~~L~~~gv~~~~~V~v~~~~s~~~~ 3784 (4334)
T PRK05691 3714 RDYPLEQSYVRLFEAQVAAHPQRIAASCL---DQ------QWSYAELNRAANRLGHALRAAGVGVDQPVALLAERGLDLL 3784 (4334)
T ss_pred CCCccccCHHHHHHHHHHhCCCceEEEcC---CC------cccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHH
Confidence 34455679999999999999999999976 54 5999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCC-CCccEEEEecCCChhhHHHHhhcC
Q 010568 118 IGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTT-EHLKTIVSFSKVKPEQREEIEKYG 196 (507)
Q Consensus 118 ~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~ 196 (507)
+++|||+++|++++||+|.++.+++.++++.++++++|++............... .....++..+
T Consensus 3785 v~~lavlkaG~a~vpld~~~p~~r~~~il~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 3850 (4334)
T PRK05691 3785 GMIVGSFKAGAGYLPLDPGLPAQRLQRIIELSRTPVLVCSAACREQARALLDELGCANRPRLLVWE-------------- 3850 (4334)
T ss_pred HHHHHHHhhCcEEeCCCCCChHHHHHHHHHhcCCCEEEecCcccchhhhhhcccccccccceeeec--------------
Confidence 9999999999999999999999999999999999999998875443222221110 0111121111
Q ss_pred ceEeeHHHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecC
Q 010568 197 LAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLP 276 (507)
Q Consensus 197 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p 276 (507)
+................+++.++|+|||||||.||||+++|+++.+.+.+....+ ++++.|+++...+
T Consensus 3851 -------~~~~~~~~~~~~~~~~~~~~~ayvi~TSGSTG~PKGV~~~h~~~~~~~~~~~~~~-----~~~~~~~~~~~~s 3918 (4334)
T PRK05691 3851 -------EVQAGEVASHNPGIYSGPDNLAYVIYTSGSTGLPKGVMVEQRGMLNNQLSKVPYL-----ALSEADVIAQTAS 3918 (4334)
T ss_pred -------ccccccccccCCCCCCCCCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHHhc-----CCCccceEEEecC
Confidence 1111111111222334678999999999999999999999999999998855544 7899999999999
Q ss_pred hHHHHHHHHHHHHHHcCCEEEEecC----CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHH
Q 010568 277 LAHIFDRAIEEVFISNGAAIGFWRG----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYS 352 (507)
Q Consensus 277 l~h~~g~~~~~~~l~~G~~v~l~~~----~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 352 (507)
+++..+.+.++.++..|+++++.+. ++..+++.++++++|++..+|++++.++......
T Consensus 3919 ~~fd~s~~~~~~~l~~G~~l~i~~~~~~~~~~~l~~~~~~~~vt~~~~~Ps~~~~l~~~~~~~----------------- 3981 (4334)
T PRK05691 3919 QSFDISVWQFLAAPLFGARVEIVPNAIAHDPQGLLAHVQAQGITVLESVPSLIQGMLAEDRQA----------------- 3981 (4334)
T ss_pred CchhHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhcccc-----------------
Confidence 9999999999999999999999864 7899999999999999999999998875421000
Q ss_pred hHHhhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhh-CCcEEeecccccCccceeccCC
Q 010568 353 YKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVSLP 431 (507)
Q Consensus 353 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~ 431 (507)
..+||.+++|||+++.++.+.|.+.+ +++++|.||+||++..++....
T Consensus 3982 -------------------------------~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~~~~~~ 4030 (4334)
T PRK05691 3982 -------------------------------LDGLRWMLPTGEAMPPELARQWLQRYPQIGLVNAYGPAECSDDVAFFRV 4030 (4334)
T ss_pred -------------------------------CCCceEEEecCCcCCHHHHHHHHHhCCCCeEEeCccCccceeEEEEEEc
Confidence 03799999999999999999988765 7899999999999987765443
Q ss_pred CCC---ccCCcccccccCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhc-c-------cCceeec
Q 010568 432 NEM---SMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-V-------DGWFHTG 500 (507)
Q Consensus 432 ~~~---~~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~-~-------dgw~~TG 500 (507)
... .....+|+|++|++++|+| ++++.+|.| ..|||+|+|+.+++||+|+|+.|+++| . ++||+||
T Consensus 4031 ~~~~~~~~~~~iG~p~~~~~~~v~d-~~~~~~p~g--~~GEL~i~G~~v~~GY~~~~~~t~~~f~~~p~~~~~~~~yrTG 4107 (4334)
T PRK05691 4031 DLASTRGSYLPIGSPTDNNRLYLLD-EALELVPLG--AVGELCVAGTGVGRGYVGDPLRTALAFVPHPFGAPGERLYRTG 4107 (4334)
T ss_pred ccccccCCcCCCCCccCCCEEEEEC-CCCCCCCCC--CceEEEEecccccccccCCcccchhhcccCCCCCCCceeeccC
Confidence 321 1224699999999999999 777766554 899999999999999999999999999 2 3699999
Q ss_pred -cEEEecC
Q 010568 501 -MGVWEQL 507 (507)
Q Consensus 501 -lg~~d~d 507 (507)
+|++++|
T Consensus 4108 Dl~~~~~d 4115 (4334)
T PRK05691 4108 DLARRRSD 4115 (4334)
T ss_pred cceeecCC
Confidence 9999876
|
|
| >PRK07867 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-46 Score=386.72 Aligned_cols=375 Identities=19% Similarity=0.238 Sum_probs=293.6
Q ss_pred CCCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHC-CCCCCCEEEEEeCCchhhHHHH
Q 010568 42 GMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTC-GVEERGKCGIYGVNCPEWIIGM 120 (507)
Q Consensus 42 ~~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~-gv~~gd~V~i~~~n~~~~~~~~ 120 (507)
...++.++|.+++. +|++|+++. + +++||.||.++++++|++|+++ |++++++|+++++|++++++++
T Consensus 3 ~~~~~~~~l~~~a~--~~~~a~~~~----~-----~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~V~i~~~n~~~~~~~~ 71 (529)
T PRK07867 3 SAPTVAELLLPLAE--DDDRGLYFE----D-----SFTSWREHIRGSAARAAALRARLDPTRPPHVGVLLDNTPEFSLLL 71 (529)
T ss_pred ccccHHHHHHHhcc--cCCceEEEC----C-----cEEeHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHH
Confidence 45679999988774 789998754 3 4699999999999999999997 8999999999999999999999
Q ss_pred HHHHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCceEe
Q 010568 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVY 200 (507)
Q Consensus 121 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 200 (507)
+||+++|++++|+++.++.+++.++++.++++++|++++....+.... ..+ .++.++. .
T Consensus 72 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~----~~~-~~~~~~~----------------~ 130 (529)
T PRK07867 72 GAAALSGIVPVGLNPTRRGAALARDIAHADCQLVLTESAHAELLDGLD----PGV-RVINVDS----------------P 130 (529)
T ss_pred HHHHhcCCEEEEecCCCChHHHHHHHHhCCCeEEEECHhHHHHHHhhc----cCc-eEEEecc----------------c
Confidence 999999999999999999999999999999999999987655433321 111 2222221 1
Q ss_pred eHHHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHH
Q 010568 201 SWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHI 280 (507)
Q Consensus 201 ~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~ 280 (507)
.|.+++..............++++++++|||||||.||+|+++|.++..+...+...+ ++...|++++.+|++|.
T Consensus 131 ~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~~~ 205 (529)
T PRK07867 131 AWADELAAHRDAEPPFRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLAQRF-----GLGPDDVCYVSMPLFHS 205 (529)
T ss_pred cHHHHhcccCCCCCCcccCCccceEEEEECCCCCCCCcEEEecHHHHHHHHHHHHHhh-----CCCcccEEEEecchhHH
Confidence 2444443221112222334678999999999999999999999999988777754444 67889999999999999
Q ss_pred HHHHH-HHHHHHcCCEEEEecC-CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhHHhhh
Q 010568 281 FDRAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNL 358 (507)
Q Consensus 281 ~g~~~-~~~~l~~G~~v~l~~~-~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 358 (507)
+++.. ++.++..|+++++.+. ++..+++.++++++|++.++|+.+..++.....
T Consensus 206 ~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~ll~~~~~------------------------ 261 (529)
T PRK07867 206 NAVMAGWAVALAAGASIALRRKFSASGFLPDVRRYGATYANYVGKPLSYVLATPER------------------------ 261 (529)
T ss_pred HHHHHHHHHHHhcCceEEecCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCc------------------------
Confidence 99876 5667999999998765 899999999999999999999999887541100
Q ss_pred hcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhCCcEEeecccccCccceeccCCCCCccCC
Q 010568 359 KKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIG 438 (507)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~ 438 (507)
... ..+++|. ++||+.+++.+ ..+.+.+|.++++.||+||+++++..... ...+
T Consensus 262 ---------~~~------------~~~~lr~-~~gg~~~~~~~-~~~~~~~g~~l~~~YG~TE~~~~~~~~~~---~~~~ 315 (529)
T PRK07867 262 ---------PDD------------ADNPLRI-VYGNEGAPGDI-ARFARRFGCVVVDGFGSTEGGVAITRTPD---TPPG 315 (529)
T ss_pred ---------ccc------------cccceEE-EecCCCChHHH-HHHHHHhCCcEEEeecccccccccccCCC---CCCC
Confidence 000 0026774 56888887765 56666789999999999999865543221 2347
Q ss_pred cccccccCceEEEeecCCCccccCCCCC------------CceEEE-ecCCccccccCChhhhhhhcccCceeec-cEEE
Q 010568 439 TVGPPVPNVDVCLESVPEMEYDALSSTP------------RGEVCV-KGSTVFSGYYKREDLTKEVMVDGWFHTG-MGVW 504 (507)
Q Consensus 439 s~G~p~pg~~i~ivd~~~~~~~~~~~g~------------~Gel~v-~g~~v~~gY~~~~~~~~~~~~dgw~~TG-lg~~ 504 (507)
++|.|++| ++|+|.+++..++ .|+ .|||++ +|++++.||+++++.+.+.|.+|||+|| +|++
T Consensus 316 ~~g~~~~~--~~i~~~~~~~~~~--~g~~~~~~~~~~~~~~Gel~i~~g~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~ 391 (529)
T PRK07867 316 ALGPLPPG--VAIVDPDTGTECP--PAEDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEADAERMRGGVYWSGDLAYR 391 (529)
T ss_pred CcCCCCCC--EEEEECCCCCCCC--CCccccccccccCCcceEEEEecCCcccccccCChHhhhhhhcCCeEeeccEEEE
Confidence 89999999 6777723344333 345 899999 9999999999999999999999999999 9999
Q ss_pred ecC
Q 010568 505 EQL 507 (507)
Q Consensus 505 d~d 507 (507)
|+|
T Consensus 392 ~~~ 394 (529)
T PRK07867 392 DAD 394 (529)
T ss_pred eCC
Confidence 875
|
|
| >PTZ00297 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-45 Score=404.57 Aligned_cols=426 Identities=18% Similarity=0.242 Sum_probs=334.0
Q ss_pred CCCCCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHH
Q 010568 40 IPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIG 119 (507)
Q Consensus 40 ~~~~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~ 119 (507)
.+...|+.++|++.++++|+++|+... . ..+.++++||+|+.++++++|.+|+++|+++||+|+|+++|+++|+++
T Consensus 423 ~~~~~Tl~dll~~~a~~~pd~~al~~~---~-~~g~~~~lTY~El~~~V~~lAa~L~~lGV~~GDrVaIls~N~~Ewvia 498 (1452)
T PTZ00297 423 LAGVRSLGEMWERSVTRHSTFRCLGQT---S-ESGESEWLTYGTVDARARELGSGLLALGVRPGDVIGVDCEASRNIVIL 498 (1452)
T ss_pred cccCCCHHHHHHHHHHHCCCCeEEEEe---c-cCCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHH
Confidence 366679999999999999999998642 1 123457899999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhH-HHHhhcCce
Q 010568 120 MEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQR-EEIEKYGLA 198 (507)
Q Consensus 120 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~ 198 (507)
.+||+++|++++|+++ +.+++.+++++++++++|++.+....+..... +.++.++++++...... ......+..
T Consensus 499 ~lA~~~~GaV~VPly~--t~~eL~yIL~~S~akvVfv~~~~l~kl~~i~~---~~Lr~IIv~d~~~~~~~~~~~~~~~i~ 573 (1452)
T PTZ00297 499 EVACALYGFTTLPLVG--KGSTMRTLIDEHKIKVVFADRNSVAAILTCRS---RKLETVVYTHSFYDEDDHAVARDLNIT 573 (1452)
T ss_pred HHHHHHcCCEEEeCCC--CHHHHHHHHHhcCCcEEEEchhHHHHHHhhcc---cCCcEEEEECCCcccccccccccCCcc
Confidence 9999999999999986 46799999999999999999877766655432 46888998864211000 000011334
Q ss_pred EeeHHHHHhccccCCCC-CCCCCCCCeEEEEe---ccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEe
Q 010568 199 VYSWDEFLQLGENKQFD-LPVKKKNDICTIMY---TSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSY 274 (507)
Q Consensus 199 ~~~~~~l~~~~~~~~~~-~~~~~~~~~a~i~~---TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~ 274 (507)
..+|++++..+.....+ .....+++++.|+| ||||||.||||++||.|++.++....... .......+|+++++
T Consensus 574 ~~s~~~ll~~G~~~~~~~~~~~~~dDlatIiYtSyTSGTTG~PKGVmLTH~Nlla~~~~~~~~~--~~~~~~~~D~~Ls~ 651 (1452)
T PTZ00297 574 LIPYEFVEQKGRLCPVPLKEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTG--VLPSSFKKHLMVHF 651 (1452)
T ss_pred eeeHHHHHhcCcccCccccCCCCcccEEEEEecCCCCCCCcCCcEEEEeHHHHHHHHHHHhhhc--cccCCCCCCEEEEe
Confidence 67899999876421211 22346788999986 99999999999999999999988753311 11134678999999
Q ss_pred cChHHHHHHHHHHHHHHcCCEEEEecCCHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhH
Q 010568 275 LPLAHIFDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYK 354 (507)
Q Consensus 275 ~pl~h~~g~~~~~~~l~~G~~v~l~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (507)
+|++|+++....+.+++.|++++.. ++..+++.|++++||+++++|.+|+++.+.+.++....+.+++++|++|.+++
T Consensus 652 LPLaHI~er~~~~~~l~~G~~I~~~--d~~~lledL~~~rPTv~~~VPrv~ekI~~~i~~~~~~~~~~~~~lf~~A~~~k 729 (1452)
T PTZ00297 652 TPFAMLFNRVFVLGLFAHGSAVATV--DAAHLQRAFVKFQPTILVAAPSLFSTSRLQLSRANERYSAVYSWLFERAFQLR 729 (1452)
T ss_pred chHHHHHHHHHHHHHHHcCCEEEeC--CHHHHHHHHHHHCCEEEEecHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 9999999977777889999998753 78999999999999999999999999999888888888889999999999998
Q ss_pred HhhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCC--CCCHHHHHHHHHhhCCcEEeecccccCccceeccCCC
Q 010568 355 FHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAA--PLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPN 432 (507)
Q Consensus 355 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~--~l~~~l~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~ 432 (507)
...+..+ -.....++++.++++++.+|.++|.+++||+ +++..+. .++++..+||+||+. +.+.++
T Consensus 730 ~~~~~~g---~~~~~l~d~LVf~kir~~lGGrlr~~isGga~~~l~~~l~------~~i~i~~g~glTE~~---~~~~~~ 797 (1452)
T PTZ00297 730 SRLINIH---RRDSSLLRFIFFRATQELLGGCVEKIVLCVSEESTSFSLL------EHISVCYVPCLREVF---FLPSEG 797 (1452)
T ss_pred HHHHhcC---CCCcHHHHHHHHHHHHHHhcCCeEEEEECCCccccChHHh------CCceEEEecceEEee---eecCCC
Confidence 7665543 2345578999999999999999999999983 4443322 257788999999943 333333
Q ss_pred CCccCCcccccccCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhcccCceeec-cEEEe
Q 010568 433 EMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG-MGVWE 505 (507)
Q Consensus 433 ~~~~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~dgw~~TG-lg~~d 505 (507)
... ..|.|+||+++||.++++.... +..|||+++ |++||+.|.+. .+||+..| +-.+|
T Consensus 798 ~~~---~~G~PlpgvEvKI~~~~E~~~~----~~~GEIlvr-------~~kdpe~T~e~-~~gW~~dG~L~Iid 856 (1452)
T PTZ00297 798 VFC---VDGTPAPSLQVDLEPFDEPSDG----AGIGQLVLA-------KKGEPRRTLPI-AAQWKRDRTLRLLG 856 (1452)
T ss_pred Ccc---cCCeecCceEEEEcccccccCC----CCCCeEEEE-------ECCChHHHHHh-hCcCccCCeEEEEe
Confidence 322 3499999999999984343221 136999995 45899999874 58999999 77665
|
|
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-46 Score=467.33 Aligned_cols=378 Identities=18% Similarity=0.192 Sum_probs=309.9
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHH
Q 010568 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120 (507)
Q Consensus 41 ~~~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~ 120 (507)
+...++.++|+++++++||++|+++. + +++||+||.++++++|+.|++.|+++|++|+|+++|++++++++
T Consensus 508 ~~~~~~~~~~~~~a~~~p~~~A~~~~---~------~~~TY~eL~~~~~~lA~~L~~~gv~~g~~V~l~~~~s~~~i~~~ 578 (5163)
T PRK12316 508 PLQRGVHRLFEEQVERTPEAPALAFG---E------ETLDYAELNRRANRLAHALIERGVGPDVLVGVAMERSIEMVVAL 578 (5163)
T ss_pred CCCCCHHHHHHHHHHHCCCCeEEEeC---C------ceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence 44578999999999999999999864 3 46999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCceEe
Q 010568 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVY 200 (507)
Q Consensus 121 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 200 (507)
|||+++|++++|++|.++.+++.++++.++++++|++......+... .. ..++.++...
T Consensus 579 la~~~aG~~~vpld~~~p~~rl~~il~~~~~~~~l~~~~~~~~~~~~-----~~-~~~~~~~~~~--------------- 637 (5163)
T PRK12316 579 LAILKAGGAYVPLDPEYPAERLAYMLEDSGVQLLLSQSHLGRKLPLA-----AG-VQVLDLDRPA--------------- 637 (5163)
T ss_pred HHHHHcCCEEeccCccCcHHHHHHHHHhCCCCEEEEChhhhhhCCcc-----cC-ceEEEecCcc---------------
Confidence 99999999999999999999999999999999999987543322100 11 1223322110
Q ss_pred eHHHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHH
Q 010568 201 SWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHI 280 (507)
Q Consensus 201 ~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~ 280 (507)
...... ..........++++++|+|||||||.||||+++|.++.+.+.++...+ ++..++++++.+|++|.
T Consensus 638 ---~~~~~~-~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~fd 708 (5163)
T PRK12316 638 ---AWLEGY-SEENPGTELNPENLAYVIYTSGSTGKPKGAGNRHRALSNRLCWMQQAY-----GLGVGDTVLQKTPFSFD 708 (5163)
T ss_pred ---hhhccC-CCCCCCCCCCCCCeEEEEECCCcCCCCCEeeEcCHHHHHHHHHHHHhc-----CCCCCCEEEeeCCeehH
Confidence 011111 111222344678999999999999999999999999999998865544 78899999999999999
Q ss_pred HHHHHHHHHHHcCCEEEEecC----CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhHHh
Q 010568 281 FDRAIEEVFISNGAAIGFWRG----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFH 356 (507)
Q Consensus 281 ~g~~~~~~~l~~G~~v~l~~~----~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (507)
.++..++.+|..|+++++.+. ++..+++.++++++|++.++|++++.+++....
T Consensus 709 ~~~~~~~~~L~~G~~l~i~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~---------------------- 766 (5163)
T PRK12316 709 VSVWEFFWPLMSGARLVVAAPGDHRDPAKLVELINREGVDTLHFVPSMLQAFLQDEDV---------------------- 766 (5163)
T ss_pred HHHHHHHHHHhCCCEEEECCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcccc----------------------
Confidence 999889999999999999852 899999999999999999999999988642100
Q ss_pred hhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhh-CCcEEeecccccCccceeccCC-CCC
Q 010568 357 NLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVSLP-NEM 434 (507)
Q Consensus 357 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~-~~~ 434 (507)
. ..+++|.+++||+++++++.+.+.+.+ +.+++|.||+||++..++.... ...
T Consensus 767 ---------------~----------~~~~l~~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~ 821 (5163)
T PRK12316 767 ---------------A----------SCTSLRRIVCSGEALPADAQEQVFAKLPQAGLYNLYGPTEAAIDVTHWTCVEEG 821 (5163)
T ss_pred ---------------c----------cCCCccEEEEeeccCCHHHHHHHHHhCCCCeEEeCcCcChheeeeeEEeccccc
Confidence 0 013799999999999999999987655 6899999999999865543332 222
Q ss_pred ccCCcccccccCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhc-c------cCceeec-cEEEec
Q 010568 435 SMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-V------DGWFHTG-MGVWEQ 506 (507)
Q Consensus 435 ~~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~-~------dgw~~TG-lg~~d~ 506 (507)
....++|+|++|++++|+| ++++.+| .|+.|||+|+|++++.||+++|+.|+++| . ++||+|| +|++|+
T Consensus 822 ~~~~~iG~p~~~~~~~i~d-~~~~~~p--~G~~GEl~i~G~~v~~GYl~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~ 898 (5163)
T PRK12316 822 GDSVPIGRPIANLACYILD-ANLEPVP--VGVLGELYLAGRGLARGYHGRPGLTAERFVPSPFVAGERMYRTGDLARYRA 898 (5163)
T ss_pred CCCCCCccccCCCEEEEEC-CCCCCCC--CCCceEEEecccccChhhCCChhhhhhhCCCCCCCCCCeeEecCccEEECC
Confidence 3346899999999999999 7776554 55999999999999999999999999988 2 3499999 999997
Q ss_pred C
Q 010568 507 L 507 (507)
Q Consensus 507 d 507 (507)
|
T Consensus 899 d 899 (5163)
T PRK12316 899 D 899 (5163)
T ss_pred C
Confidence 6
|
|
| >PRK13390 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-46 Score=384.77 Aligned_cols=381 Identities=17% Similarity=0.194 Sum_probs=288.4
Q ss_pred HHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHHHHHHhcCCEEe
Q 010568 52 MAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCV 131 (507)
Q Consensus 52 ~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v 131 (507)
.++.++|+++|+++. +++ +.+||.||.++++++|+.|.++|+++||+|+++++|++++++++|||+++|++++
T Consensus 5 ~~a~~~p~~~a~~~~---~~~----~~lTy~el~~~~~~la~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~Ga~~~ 77 (501)
T PRK13390 5 THAQIAPDRPAVIVA---ETG----EQVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVVLWAALRSGLYIT 77 (501)
T ss_pred hhhhhCCCCcEEEec---CCC----eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEe
Confidence 456789999999864 322 5799999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCceEeeHHHHHhcccc
Q 010568 132 PLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGEN 211 (507)
Q Consensus 132 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 211 (507)
++++.++.+++.++++.++++.++++........... ......+.+..... ....+++......
T Consensus 78 ~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~- 141 (501)
T PRK13390 78 AINHHLTAPEADYIVGDSGARVLVASAALDGLAAKVG----ADLPLRLSFGGEID-----------GFGSFEAALAGAG- 141 (501)
T ss_pred ccccCCCHHHHHHHHHhcCCcEEEEcchhhhHHHHhh----hccceEEEecCccc-----------ccccHHHHhcccC-
Confidence 9999999999999999999999999765432222111 11111222221100 1123333322110
Q ss_pred CCCCCCCCCCCCeEEEEeccCCCCCCceeee--ccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHH
Q 010568 212 KQFDLPVKKKNDICTIMYTSGTTGDPKGVMV--SNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVF 289 (507)
Q Consensus 212 ~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~--sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~ 289 (507)
......++.++++|||||||.||+|.+ +|.++......+... ......+..++++++.+|++|.+++......
T Consensus 142 ----~~~~~~~~~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~h~~~~~~~~~~ 216 (501)
T PRK13390 142 ----PRLTEQPCGAVMLYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAI-ARAFYDISESDIYYSSAPIYHAAPLRWCSMV 216 (501)
T ss_pred ----CCCCCCcccEEEEeCCCCCCCCCEEEeeccccccccchhhhHhh-HHHHhCCCCCCeEEecccchhhhHHHHHHHH
Confidence 011122357999999999999999995 455544322110000 1112357789999999999999988765556
Q ss_pred HHcCCEEEEecC-CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhHHhhhhcCCCCCCCc
Q 010568 290 ISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEAS 368 (507)
Q Consensus 290 l~~G~~v~l~~~-~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 368 (507)
+..|+++++.+. ++..+++.|+++++|++.++|+++..++.......
T Consensus 217 ~~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-------------------------------- 264 (501)
T PRK13390 217 HALGGTVVLAKRFDAQATLGHVERYRITVTQMVPTMFVRLLKLDADVR-------------------------------- 264 (501)
T ss_pred HhcCceEEEcCCcCHHHHHHHHHHcCCeEEEecHHHHHHHHhccchhc--------------------------------
Confidence 778999988775 89999999999999999999999988864211000
Q ss_pred hhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhCCcEEeecccccCccceeccCCCCCccCCcccccccCce
Q 010568 369 PIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVD 448 (507)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~s~G~p~pg~~ 448 (507)
...++ +++|.+++||+++++++.+.+++.++..+++.||+||+++++...........+++|+|++| +
T Consensus 265 ---~~~~~--------~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~g-~ 332 (501)
T PRK13390 265 ---TRYDV--------SSLRAVIHAAAPCPVDVKHAMIDWLGPIVYEYYSSTEAHGMTFIDSPDWLAHPGSVGRSVLG-D 332 (501)
T ss_pred ---ccCCh--------hhhheEEEcCCCCCHHHHHHHHHhcCCceeeeecccccCceEEecchhhccCCCCcCCcccc-e
Confidence 00001 27899999999999999999999889999999999999876554333222345789999999 7
Q ss_pred EEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhcc---cCceeec-cEEEecC
Q 010568 449 VCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV---DGWFHTG-MGVWEQL 507 (507)
Q Consensus 449 i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~---dgw~~TG-lg~~d~d 507 (507)
++|+| +++..+ +.|+.|||+++|++++.||+++++.+.+.|. +||++|| +|++|+|
T Consensus 333 ~~i~d-~~~~~~--~~g~~Gel~v~~~~~~~gy~~~~~~t~~~~~~~~~~w~~tGDl~~~~~d 392 (501)
T PRK13390 333 LHICD-DDGNEL--PAGRIGTVYFERDRLPFRYLNDPEKTAAAQHPAHPFWTTVGDLGSVDED 392 (501)
T ss_pred EEEEC-CCCCCC--CCCCceEEEEecCCccccccCChhhhHHhhccCCCceEEcCceEEECCC
Confidence 99999 777654 4569999999999999999999999998873 6899999 9999976
|
|
| >PRK08279 long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-45 Score=390.45 Aligned_cols=390 Identities=18% Similarity=0.221 Sum_probs=299.3
Q ss_pred CCCCCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHH
Q 010568 40 IPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIG 119 (507)
Q Consensus 40 ~~~~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~ 119 (507)
+....|+.++|.+.++++||++|+++. + +.+||+||.++++++|+.|.+.|+++||+|+++++|+++++++
T Consensus 33 ~~~~~tl~~~l~~~a~~~p~~~Ai~~~---~------~~~Ty~eL~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~v~~ 103 (600)
T PRK08279 33 PDSKRSLGDVFEEAAARHPDRPALLFE---D------QSISYAELNARANRYAHWAAARGVGKGDVVALLMENRPEYLAA 103 (600)
T ss_pred CCCcccHHHHHHHHHHhCCCCcEEEeC---C------CcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHH
Confidence 355679999999999999999999875 3 4699999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCceE
Q 010568 120 MEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAV 199 (507)
Q Consensus 120 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 199 (507)
+|||+++|++++++++.++.+++.++++.++++++|++.+....+....... .....++..++.... ..
T Consensus 104 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----------~~ 172 (600)
T PRK08279 104 WLGLAKLGAVVALLNTQQRGAVLAHSLNLVDAKHLIVGEELVEAFEEARADL-ARPPRLWVAGGDTLD----------DP 172 (600)
T ss_pred HHHHHhcCcEEeecCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHhhhh-cccceEEEecCcccc----------cc
Confidence 9999999999999999999999999999999999999987666554433322 222233333221100 01
Q ss_pred eeHHHHHhccccC----CCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEec
Q 010568 200 YSWDEFLQLGENK----QFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYL 275 (507)
Q Consensus 200 ~~~~~l~~~~~~~----~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~ 275 (507)
..+.++....... .........+++++++|||||||.||+|.++|.++..++..+...+ ++.++|++++.+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~l~~~d~~l~~~ 247 (600)
T PRK08279 173 EGYEDLAAAAAGAPTTNPASRSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLL-----RLTPDDVLYCCL 247 (600)
T ss_pred ccHHHHhhhcccCCccCCCcccCCCccccEEEEEcCCCCCCCcEEEEeHHHHHHHHHHHHHhc-----CCCCCcEEEEec
Confidence 2233333222111 1112334668999999999999999999999999999988865543 788999999999
Q ss_pred ChHHHHHHHH-HHHHHHcCCEEEEecC-CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHh
Q 010568 276 PLAHIFDRAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSY 353 (507)
Q Consensus 276 pl~h~~g~~~-~~~~l~~G~~v~l~~~-~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (507)
|++|.+++.. ++.++..|+++++.+. ++..+++.++++++|++.++|.+++.++.......
T Consensus 248 pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~l~~~l~~~~~~~~----------------- 310 (600)
T PRK08279 248 PLYHNTGGTVAWSSVLAAGATLALRRKFSASRFWDDVRRYRATAFQYIGELCRYLLNQPPKPT----------------- 310 (600)
T ss_pred CchhhhhHHHHHHHHHhcCcEEEEcCCCCHHHHHHHHHHhcceEEeehHHHHHHHHhCCCCcc-----------------
Confidence 9999999876 4556888898888776 99999999999999999999999988764210000
Q ss_pred HHhhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhCC-cEEeecccccCccceeccCCC
Q 010568 354 KFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACA-HVLQGYGLTETCAGTFVSLPN 432 (507)
Q Consensus 354 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~~-~v~~~YG~tE~~~~~~~~~~~ 432 (507)
. ...+++.+ +|+.+++++.+.+.+.++. .+++.||+||++..+.. .
T Consensus 311 -----------------~-----------~~~~l~~~--~g~~l~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~-~-- 357 (600)
T PRK08279 311 -----------------D-----------RDHRLRLM--IGNGLRPDIWDEFQQRFGIPRILEFYAASEGNVGFIN-V-- 357 (600)
T ss_pred -----------------c-----------cCcceeEE--ecCCCCHHHHHHHHHHhCcceeeeeecccccceeecc-c--
Confidence 0 00256654 4677999999999998875 59999999998764432 2
Q ss_pred CCccCCccccccc----Cce---------EEEeecCCCccccCCCCCCceEE--EecCCccccccCChhhhhhhc-c---
Q 010568 433 EMSMIGTVGPPVP----NVD---------VCLESVPEMEYDALSSTPRGEVC--VKGSTVFSGYYKREDLTKEVM-V--- 493 (507)
Q Consensus 433 ~~~~~~s~G~p~p----g~~---------i~ivd~~~~~~~~~~~g~~Gel~--v~g~~v~~gY~~~~~~~~~~~-~--- 493 (507)
....+++|.+.+ +.. ..|.+ .++...+++.|+.|||+ ++|+.++.|| ++++.++..| .
T Consensus 358 -~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~g~~Gel~~~i~~~~~~~GY-~~~~~t~~~~~~~~~ 434 (600)
T PRK08279 358 -FNFDGTVGRVPLWLAHPYAIVKYDVDTGEPVRD-ADGRCIKVKPGEVGLLIGRITDRGPFDGY-TDPEASEKKILRDVF 434 (600)
T ss_pred -CCCCcccccccccccccceeeeeccCcCceeeC-CCCccccCCCCCceeEEEEecCccccccc-CCchhhHHHHhhccc
Confidence 123367887666 332 23344 44444456677999998 7899999999 8898888776 2
Q ss_pred ---cCceeec-cEEEecC
Q 010568 494 ---DGWFHTG-MGVWEQL 507 (507)
Q Consensus 494 ---dgw~~TG-lg~~d~d 507 (507)
++||+|| +|++|+|
T Consensus 435 ~~~~~~~~TGDlg~~~~d 452 (600)
T PRK08279 435 KKGDAWFNTGDLMRDDGF 452 (600)
T ss_pred CCCCceEeecceEEEcCC
Confidence 5799999 9999975
|
|
| >PRK09192 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-46 Score=390.79 Aligned_cols=391 Identities=18% Similarity=0.259 Sum_probs=298.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCc
Q 010568 34 DGFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNC 113 (507)
Q Consensus 34 ~~~~~~~~~~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~ 113 (507)
.+++.+.++++|+.++|+.+++++|+..+ ++ .++..++.+||.||..++.++|++|+++|+++||+|+++++|+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~Ty~eL~~~~~~~a~~L~~~gi~~gd~V~l~~~n~ 84 (579)
T PRK09192 11 SSLPRRYADFPTLVEALDYAALGEAGMNF-YD-----RRGQLEEALPYQTLRARAEAGARRLLALGLKPGDRVALIAETD 84 (579)
T ss_pred ccccccccchhhHHHHHHHhhccCCceEE-Ee-----cCCCEEEEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCc
Confidence 45677889999999999999998875544 32 2233457899999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHhcCCEEeeccCCCC-------hHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCCh
Q 010568 114 PEWIIGMEACNALGLHCVPLYDTLG-------AGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKP 186 (507)
Q Consensus 114 ~~~~~~~lA~~~~G~~~v~l~~~~~-------~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 186 (507)
++++++++||+++|++++|+++..+ .+++.++++.++++++|+++.....+.+..... ..+
T Consensus 85 ~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~~~~l~~~i~~~~~~~il~~~~~~~~~~~~~~~~----~~~-------- 152 (579)
T PRK09192 85 GDFVEAFFACQYAGLVPVPLPLPMGFGGRESYIAQLRGMLASAQPAAIITPDELLPWVNEATHGN----PLL-------- 152 (579)
T ss_pred hhHHHHHHHHHHcCCeeEeccCCcccccchHHHHHHHHHHHhcCCCEEEeChHHHHHHHHhhccc----ccc--------
Confidence 9999999999999999999986543 578999999999999999887655444332111 011
Q ss_pred hhHHHHhhcCceEeeHHHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCC
Q 010568 187 EQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLT 266 (507)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~ 266 (507)
...+++++..... .....+...++++++++|||||||.||+|.++|.+++..+..... ...++.
T Consensus 153 -----------~~~~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~----~~~~~~ 216 (579)
T PRK09192 153 -----------HVLSHAWFKALPE-ADVALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISH----DGLKVR 216 (579)
T ss_pred -----------ceeehhhhcccCC-CccccCCCCCCCeEEEEecCCCCCCCceEEeeHHHHHHHHHHHHh----hcccCC
Confidence 1123333332221 112223346789999999999999999999999999988776433 134788
Q ss_pred CCcEEEEecChHHHHHHHH-HHHHHHcCCEEEEecC-----CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccc
Q 010568 267 SEDVYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG-----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGG 340 (507)
Q Consensus 267 ~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~v~l~~~-----~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~ 340 (507)
.+|++++++|++|.+++.. ++.++..|+++++.+. ++..+++.+.++++++++..|.++..+.......
T Consensus 217 ~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~l~~~~~~~~----- 291 (579)
T PRK09192 217 PGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLPTRDFARRPLQWLDLISRNRGTISYSPPFGYELCARRVNSK----- 291 (579)
T ss_pred CCCeEEEeCCCCCcchhHHHHHHHHHhCCeeEeeCHHHHHHCHHHHHHHHHhcCcEEEeCCcHHHHHHHHhhccc-----
Confidence 8999999999999999875 5667889999877652 6889999999999997776555554433211000
Q ss_pred hhHHHHHHHHHHhHHhhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhC------CcEE
Q 010568 341 LLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVAC------AHVL 414 (507)
Q Consensus 341 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~------~~v~ 414 (507)
.....++ +++|.+++||+++++.+.+.+.+.++ ..++
T Consensus 292 -----------------------------~~~~~~l--------~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~ 334 (579)
T PRK09192 292 -----------------------------DLAELDL--------SCWRVAGIGADMIRPDVLHQFAEAFAPAGFDDKAFM 334 (579)
T ss_pred -----------------------------cccccch--------hhhheeEecCccCCHHHHHHHHHHHHhcCCChhhcc
Confidence 0011112 27899999999999999999888763 3599
Q ss_pred eecccccCccceeccCCCCC---------------------------ccCCcccccccCceEEEeecCCCccccCCCCCC
Q 010568 415 QGYGLTETCAGTFVSLPNEM---------------------------SMIGTVGPPVPNVDVCLESVPEMEYDALSSTPR 467 (507)
Q Consensus 415 ~~YG~tE~~~~~~~~~~~~~---------------------------~~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~ 467 (507)
+.||+||+++.++....... ....++|+|+||++++|+| +++..++ .|+.
T Consensus 335 ~~yG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~p~~~v~i~d-~~~~~~~--~g~~ 411 (579)
T PRK09192 335 PSYGLAEATLAVSFSPLGSGIVVEEVDRDRLEYQGKAVAPGAETRRVRTFVNCGKALPGHEIEIRN-EAGMPLP--ERVV 411 (579)
T ss_pred cccccccceeEEeccCCCCCceEEEEcHHHhcCCceeeccCCCCccceeEeecCCcCCCcEEEEEC-CCCCCCC--CCCE
Confidence 99999999876654432110 0125799999999999999 7776554 4589
Q ss_pred ceEEEecCCccccccCChhhhhhhc-ccCceeec-cEEE
Q 010568 468 GEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTG-MGVW 504 (507)
Q Consensus 468 Gel~v~g~~v~~gY~~~~~~~~~~~-~dgw~~TG-lg~~ 504 (507)
|||+++|++++.|||++ +.+.+.+ .||||+|| +|++
T Consensus 412 Gel~i~g~~~~~gY~~~-~~~~~~~~~dgw~~TGDlg~~ 449 (579)
T PRK09192 412 GHICVRGPSLMSGYFRD-EESQDVLAADGWLDTGDLGYL 449 (579)
T ss_pred EEEEecCCchhhhhcCC-ccccccccCCceeeccceeeE
Confidence 99999999999999999 5666666 79999999 9998
|
|
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-46 Score=459.50 Aligned_cols=376 Identities=19% Similarity=0.231 Sum_probs=308.9
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHH
Q 010568 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120 (507)
Q Consensus 41 ~~~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~ 120 (507)
+...++.++|+++++++||++|+++. + ..+||+||.++++++|+.|++.|+++|++|++++++++++++++
T Consensus 1128 ~~~~~l~~~~~~~a~~~p~~~Al~~~---~------~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~s~~~iv~~ 1198 (4334)
T PRK05691 1128 PAQAWLPELLNEQARQTPERIALVWD---G------GSLDYAELHAQANRLAHYLRDKGVGPDVCVAIAAERSPQLLVGL 1198 (4334)
T ss_pred CccCCHHHHHHHHHHhCCCCeEEEEC---C------ceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence 34578999999999999999999865 3 35999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCceEe
Q 010568 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVY 200 (507)
Q Consensus 121 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 200 (507)
|||+++|++++|++|.++.+++.++++.++++++|++......+... ... ..+.++..
T Consensus 1199 lailkaG~~~vpld~~~p~~rl~~il~~~~~~~vi~~~~~~~~~~~~-----~~~-~~~~~~~~---------------- 1256 (4334)
T PRK05691 1199 LAILKAGGAYVPLDPDYPAERLAYMLADSGVELLLTQSHLLERLPQA-----EGV-SAIALDSL---------------- 1256 (4334)
T ss_pred HHHHHhCCEEEecCcCChHHHHHHHHHhcCCCEEEecchhhhhcccc-----cCc-eEEeeccc----------------
Confidence 99999999999999999999999999999999999987654332111 011 11111110
Q ss_pred eHHHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHH
Q 010568 201 SWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHI 280 (507)
Q Consensus 201 ~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~ 280 (507)
.........+.....++++++++|||||||.||||.++|+++.+.+.+....+ ++.++|++++..|++|.
T Consensus 1257 -----~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~~fd 1326 (4334)
T PRK05691 1257 -----HLDSWPSQAPGLHLHGDNLAYVIYTSGSTGQPKGVGNTHAALAERLQWMQATY-----ALDDSDVLMQKAPISFD 1326 (4334)
T ss_pred -----cccccCCCCCCCCCCCCCeEEEEEcCCCCCCCceeEeecHHHHHHHHHHHHhc-----CCCCCCEEEEeCCccHH
Confidence 00000011112234678999999999999999999999999999888855444 78899999999999999
Q ss_pred HHHHHHHHHHHcCCEEEEecC----CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhHHh
Q 010568 281 FDRAIEEVFISNGAAIGFWRG----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFH 356 (507)
Q Consensus 281 ~g~~~~~~~l~~G~~v~l~~~----~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (507)
.++..++.++..|+++++.+. ++..+++.++++++|++.++|++++.+......
T Consensus 1327 ~s~~~~~~~L~~G~~l~i~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~~---------------------- 1384 (4334)
T PRK05691 1327 VSVWECFWPLITGCRLVLAGPGEHRDPQRIAELVQQYGVTTLHFVPPLLQLFIDEPLA---------------------- 1384 (4334)
T ss_pred HHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEECcHHHHHHHHhCccc----------------------
Confidence 988889999999999999753 889999999999999999999999987542100
Q ss_pred hhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhh-CCcEEeecccccCccceeccCC-CCC
Q 010568 357 NLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVSLP-NEM 434 (507)
Q Consensus 357 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~-~~~ 434 (507)
. ..++||.+++||+++++++.+.|.+.+ +++++|.||+||++..++.... ...
T Consensus 1385 ---------------~----------~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~ 1439 (4334)
T PRK05691 1385 ---------------A----------ACTSLRRLFSGGEALPAELRNRVLQRLPQVQLHNRYGPTETAINVTHWQCQAED 1439 (4334)
T ss_pred ---------------c----------cCCcccEEEEeecCCCHHHHHHHHHhCCCcEEEeCCCcChheeeeeeeeccccc
Confidence 0 013799999999999999999998876 6899999999999876654332 222
Q ss_pred ccCCcccccccCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhc-c-----c--Cceeec-cEEEe
Q 010568 435 SMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-V-----D--GWFHTG-MGVWE 505 (507)
Q Consensus 435 ~~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~-~-----d--gw~~TG-lg~~d 505 (507)
....++|+|++|++++|+| ++++.++. |+.|||+|+|+++++||+++|+.|+++| . + +||+|| +|++|
T Consensus 1440 ~~~~~iG~p~~~~~~~i~d-~~~~~vp~--G~~GEL~i~G~~v~~GYl~~p~~t~~~f~~~p~~~~~~r~yrTGDl~~~~ 1516 (4334)
T PRK05691 1440 GERSPIGRPLGNVLCRVLD-AELNLLPP--GVAGELCIGGAGLARGYLGRPALTAERFVPDPLGEDGARLYRTGDRARWN 1516 (4334)
T ss_pred CCCCcccceeCCCEEEEEC-CCCCCCCC--CCceEEEecCcccchhhcCCccccHhhCCCCCCCCCCceEEEccceEEEC
Confidence 3347899999999999999 77766654 5999999999999999999999999998 2 2 499999 99999
Q ss_pred cC
Q 010568 506 QL 507 (507)
Q Consensus 506 ~d 507 (507)
+|
T Consensus 1517 ~d 1518 (4334)
T PRK05691 1517 AD 1518 (4334)
T ss_pred CC
Confidence 76
|
|
| >PRK13391 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-45 Score=379.65 Aligned_cols=386 Identities=18% Similarity=0.168 Sum_probs=297.8
Q ss_pred HHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHHHHHHhcCCEE
Q 010568 51 RMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHC 130 (507)
Q Consensus 51 ~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~ 130 (507)
...++++||++|+++. +++ +.+||.||.++++++|+.|.+.|+++|++|+++++|++++++++|||+++|+++
T Consensus 4 ~~~a~~~p~~~a~~~~---~~~----~~~ty~~l~~~~~~la~~L~~~g~~~~~~V~v~~~~~~~~~~~~~a~~~~G~~~ 76 (511)
T PRK13391 4 GIHAQTTPDKPAVIMA---STG----EVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYY 76 (511)
T ss_pred hhhHhhCCCceEEEec---CCC----CEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhccEE
Confidence 4677889999999864 332 569999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCceEeeHHHHHhccc
Q 010568 131 VPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGE 210 (507)
Q Consensus 131 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 210 (507)
+++++.++.+++.++++.++++.+|++.............. ......+.+..... ......+++.....
T Consensus 77 ~~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~- 145 (511)
T PRK13391 77 TCVNSHLTPAEAAYIVDDSGARALITSAAKLDVARALLKQC-PGVRHRLVLDGDGE---------LEGFVGYAEAVAGL- 145 (511)
T ss_pred eccccccCHHHHHHHHhccCCcEEEEchhhHHHHHHHHhcC-CCceEEEEecCCCC---------CcccccHHHHhcCC-
Confidence 99999999999999999999999999987665444333222 33334444432110 00122344433221
Q ss_pred cCCCCCCCCCCCCeEEEEeccCCCCCCceeee--ccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHH
Q 010568 211 NKQFDLPVKKKNDICTIMYTSGTTGDPKGVMV--SNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEV 288 (507)
Q Consensus 211 ~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~--sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~ 288 (507)
+ ..+....++.++++|||||||.||+|.+ +|.++......... ......+..++++++.+|++|.+++...+.
T Consensus 146 --~-~~~~~~~~~~a~il~TSGtTG~PKgv~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~p~~h~~~~~~~~~ 220 (511)
T PRK13391 146 --P-ATPIADESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAF--LQRLWGFRSDMVYLSPAPLYHSAPQRAVML 220 (511)
T ss_pred --C-CCCCCCcccccEEEECCCCCCCCCEEEEccccchhhhhhHHHHH--HHHhcCCCCCCeEEEcCCHHHHHHHHHHHH
Confidence 1 1111234567899999999999999995 46655433221110 112235678899999999999999888888
Q ss_pred HHHcCCEEEEecC-CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhHHhhhhcCCCCCCC
Q 010568 289 FISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEA 367 (507)
Q Consensus 289 ~l~~G~~v~l~~~-~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 367 (507)
++..|+++++.+. ++..+++.++++++|++.++|+++..+++......
T Consensus 221 ~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~------------------------------- 269 (511)
T PRK13391 221 VIRLGGTVIVMEHFDAEQYLALIEEYGVTHTQLVPTMFSRMLKLPEEVR------------------------------- 269 (511)
T ss_pred HHHcCceEEECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCchhhc-------------------------------
Confidence 8999999998876 99999999999999999999999988764211100
Q ss_pred chhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhCCcEEeecccccCccceeccCCCCCccCCcccccccCc
Q 010568 368 SPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNV 447 (507)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~s~G~p~pg~ 447 (507)
.+.+ .+++|.+++||+++++++.+.+++.+|..+++.||+||+++++..........++++|+|++|
T Consensus 270 ----~~~~--------~~~l~~~~~gg~~~~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~~~~vG~~~~g- 336 (511)
T PRK13391 270 ----DKYD--------LSSLEVAIHAAAPCPPQVKEQMIDWWGPIIHEYYAATEGLGFTACDSEEWLAHPGTVGRAMFG- 336 (511)
T ss_pred ----ccCC--------ccceeEEEEccCCCCHHHHHHHHHHcCCceeeeeccccccceEEecCccccccCCCcCCcccc-
Confidence 0001 137999999999999999999999889999999999999887654433333445799999999
Q ss_pred eEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhc-c-cCceeec-cEEEecC
Q 010568 448 DVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-V-DGWFHTG-MGVWEQL 507 (507)
Q Consensus 448 ~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~-~-dgw~~TG-lg~~d~d 507 (507)
+++|+| +++...+ .|+.|||+++|+ ++.||+++++.+...+ . +|||+|| +|++|+|
T Consensus 337 ~~~i~d-~~~~~~~--~g~~Gel~~~g~-~~~gy~~~~~~~~~~~~~~~~w~~TGD~g~~~~~ 395 (511)
T PRK13391 337 DLHILD-DDGAELP--PGEPGTIWFEGG-RPFEYLNDPAKTAEARHPDGTWSTVGDIGYVDED 395 (511)
T ss_pred eEEEEC-CCCCCCC--CCCceEEEEecC-cceEEcCChhHhHHhhccCCCEEecCCEEEECCC
Confidence 699998 7765544 458999999999 8899999999999888 3 4899999 9999875
|
|
| >PRK08162 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-45 Score=381.04 Aligned_cols=399 Identities=20% Similarity=0.238 Sum_probs=295.2
Q ss_pred CCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHHHHH
Q 010568 44 ESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEAC 123 (507)
Q Consensus 44 ~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~ 123 (507)
+++.+.|++.++.+|+++|+.+. + ..+||.||.++++++|++|.+.|+++||+|+++++|++++++++|||
T Consensus 18 ~~~~~~~~~~~~~~~~~~a~~~~---~------~~~ty~~L~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~ 88 (545)
T PRK08162 18 LTPLSFLERAAEVYPDRPAVIHG---D------RRRTWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFGV 88 (545)
T ss_pred CCHHHHHHHHHHHCCCCeEEEEC---C------eEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHH
Confidence 67889999999999999999764 2 46999999999999999999999999999999999999999999999
Q ss_pred HhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCceEeeHH
Q 010568 124 NALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWD 203 (507)
Q Consensus 124 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (507)
+++|++++|+++.++.+++..+++.++++.+|++.+....+.+..... +.. ..+.++...... .....+...+++
T Consensus 89 ~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~---~~~~~~~~~~~~ 163 (545)
T PRK08162 89 PMAGAVLNTLNTRLDAASIAFMLRHGEAKVLIVDTEFAEVAREALALL-PGP-KPLVIDVDDPEY---PGGRFIGALDYE 163 (545)
T ss_pred HHhCcEEeccccccChHHHHHHHHhCCCeEEEEccchhhHHHHHHhhC-CCC-ceEEEecCcccc---ccCCCcccccHH
Confidence 999999999999999999999999999999999988766544332211 111 122222111100 000112234566
Q ss_pred HHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHH
Q 010568 204 EFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDR 283 (507)
Q Consensus 204 ~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~ 283 (507)
+++.............+..++++++|||||||.||+|+++|.++........ ....+..++++++.+|++|.+++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~-----~~~~~~~~~~~l~~~pl~h~~~~ 238 (545)
T PRK08162 164 AFLASGDPDFAWTLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSNI-----LAWGMPKHPVYLWTLPMFHCNGW 238 (545)
T ss_pred HHhccCCccccccCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHH-----HhcCCCCCCeeEeccCcHhhhhH
Confidence 6664432111111122446789999999999999999999998766655422 22356788899999999999998
Q ss_pred HHHHHHHHcCCEEEEec-CCHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhHHhhhhcCC
Q 010568 284 AIEEVFISNGAAIGFWR-GDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGH 362 (507)
Q Consensus 284 ~~~~~~l~~G~~v~l~~-~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 362 (507)
...+...+.|+..++.. .++..+++.++++++|++.++|.+++.+++.......
T Consensus 239 ~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~------------------------- 293 (545)
T PRK08162 239 CFPWTVAARAGTNVCLRKVDPKLIFDLIREHGVTHYCGAPIVLSALINAPAEWRA------------------------- 293 (545)
T ss_pred HHHHHHHHHccEEEEeCCCCHHHHHHHHHHcCCeEEEechHHHHHHHhCcccccc-------------------------
Confidence 76544434454444444 4999999999999999999999999998652111000
Q ss_pred CCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhCCcEEeecccccCccceeccCCCC---------
Q 010568 363 KHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNE--------- 433 (507)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~--------- 433 (507)
. + .+.+.++++|+++++.+.+.+++ +++++++.||+||+++.+..+....
T Consensus 294 ----------~--~--------~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~ 352 (545)
T PRK08162 294 ----------G--I--------DHPVHAMVAGAAPPAAVIAKMEE-IGFDLTHVYGLTETYGPATVCAWQPEWDALPLDE 352 (545)
T ss_pred ----------C--C--------ccceEEEECCCCCCHHHHHHHHH-hCCceeecccccccCcceeecccccccccCCccc
Confidence 0 0 13455678999999999998887 4899999999999876554432211
Q ss_pred -CccCCcccccccC-ceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhcccCceeec-cEEEecC
Q 010568 434 -MSMIGTVGPPVPN-VDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG-MGVWEQL 507 (507)
Q Consensus 434 -~~~~~s~G~p~pg-~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~dgw~~TG-lg~~d~d 507 (507)
.....++|.+++. ..++|+|.+++..++.+.++.|||+|+|+.++.||+++++.+...|.+|||+|| +|++|+|
T Consensus 353 ~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~g~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGDl~~~d~d 429 (545)
T PRK08162 353 RAQLKARQGVRYPLQEGVTVLDPDTMQPVPADGETIGEIMFRGNIVMKGYLKNPKATEEAFAGGWFHTGDLAVLHPD 429 (545)
T ss_pred hhhccCCCCcccCCcceEEEEcCCCCcccCCCCCceeEEEEecCcchhhhcCChhhhHHHhhCCCcccCceEEEcCC
Confidence 0112456777653 467888822444444322357999999999999999999999999999999999 9999975
|
|
| >PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-45 Score=378.65 Aligned_cols=370 Identities=19% Similarity=0.210 Sum_probs=300.2
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHHHH
Q 010568 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (507)
Q Consensus 43 ~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (507)
++++.++|++++..+|+++++... + +.+||.||.++++++|..|.+.|+++|++|+++++|+.+++++++|
T Consensus 1 ~~~~~~~l~~~a~~~p~~~~~~~~----~-----~~~t~~~l~~~~~~~a~~l~~~g~~~~~~v~~~~~~~~~~~~~~~a 71 (503)
T PRK04813 1 IMDIIETIEEFAQTQPDFPAYDYL----G-----EKLTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPEMLATFLG 71 (503)
T ss_pred CchHHHHHHHHHHhCCCceEEEeC----C-----cEEeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 467899999999999999998754 2 4699999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCceEeeH
Q 010568 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSW 202 (507)
Q Consensus 123 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 202 (507)
|+++|++++|+++.++.+++..+++..+++++|++...... . ..+ ....+
T Consensus 72 ~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~---~~~----------------------~~~~~ 121 (503)
T PRK04813 72 AVKAGHAYIPVDVSSPAERIEMIIEVAKPSLIIATEELPLE-----I---LGI----------------------PVITL 121 (503)
T ss_pred HHHcCCEEecCCCCChHHHHHHHHHhcCCCEEEeccccccc-----c---cCC----------------------cEEeh
Confidence 99999999999999999999999999999999998764100 0 011 11122
Q ss_pred HHHHhcc--ccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHH
Q 010568 203 DEFLQLG--ENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHI 280 (507)
Q Consensus 203 ~~l~~~~--~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~ 280 (507)
+++.... ...........++++++++|||||||.||+|.++|.++...+...... ..+..+++++...|++|.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~-----~~~~~~~~~~~~~p~~~~ 196 (503)
T PRK04813 122 DELKDIFATGNPYDFDHAVKGDDNYYIIFTSGTTGKPKGVQISHDNLVSFTNWMLED-----FALPEGPQFLNQAPYSFD 196 (503)
T ss_pred HHhhhhhhccccccccccCCCCCcEEEEECCCCCCCCcEEEeehHHHHHHHHHHHHH-----cCCCcCceeeecCCcchh
Confidence 2222111 011111233467889999999999999999999999999888775443 367889999999999999
Q ss_pred HHHHHHHHHHHcCCEEEEecC----CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhHHh
Q 010568 281 FDRAIEEVFISNGAAIGFWRG----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFH 356 (507)
Q Consensus 281 ~g~~~~~~~l~~G~~v~l~~~----~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (507)
.++..++.++..|+++++.+. ++..+++.+++++++++..+|++++.+.......
T Consensus 197 ~~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~--------------------- 255 (503)
T PRK04813 197 LSVMDLYPTLASGGTLVALPKDMTANFKQLFETLPQLPINVWVSTPSFADMCLLDPSFN--------------------- 255 (503)
T ss_pred HhHHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCeEEEeChHHHHHHHHhhccC---------------------
Confidence 998888889999999998764 7899999999999999999999998764321000
Q ss_pred hhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhh-CCcEEeecccccCccceeccCCCC--
Q 010568 357 NLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVSLPNE-- 433 (507)
Q Consensus 357 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~-- 433 (507)
. ...+++|.++++|+++++.+.+.+.+.+ +..+++.||+||++..++......
T Consensus 256 ----------------~--------~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~ 311 (503)
T PRK04813 256 ----------------E--------EHLPNLTHFLFCGEELPHKTAKKLLERFPSATIYNTYGPTEATVAVTSIEITDEM 311 (503)
T ss_pred ----------------c--------ccCCCceEEEEecCcCCHHHHHHHHHHCCCceEEeCcccchheeEEEEEEecccc
Confidence 0 0013789999999999999999999988 789999999999976554322211
Q ss_pred --CccCCcccccccCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhc--ccC--ceeec-cEEE
Q 010568 434 --MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM--VDG--WFHTG-MGVW 504 (507)
Q Consensus 434 --~~~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~--~dg--w~~TG-lg~~ 504 (507)
.....++|+|.++++++|+| +++..++ .|+.|||+++|+.++.||+++++.+...| .+| ||+|| +|++
T Consensus 312 ~~~~~~~~~g~~~~~~~~~i~d-~~~~~~~--~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~g~~~~~tGD~~~~ 386 (503)
T PRK04813 312 LDQYKRLPIGYAKPDSPLLIID-EEGTKLP--DGEQGEIVISGPSVSKGYLNNPEKTAEAFFTFDGQPAYHTGDAGYL 386 (503)
T ss_pred cccCCCCcccccCCCCEEEEEC-CCCCCCC--CCCceEEEEeccccccccCCChhHhHHhhccCCCceeEECCceEEe
Confidence 12235799999999999999 7776554 45899999999999999999999999888 245 99999 9998
|
|
| >PRK07787 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-45 Score=376.29 Aligned_cols=348 Identities=23% Similarity=0.296 Sum_probs=282.4
Q ss_pred hCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHHHHHHhcCCEEeeccC
Q 010568 56 RNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYD 135 (507)
Q Consensus 56 ~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~ 135 (507)
..++++|++.. + +++||.||.++++++|..|+ ++|+|+++++|+++++++++||+++|++++|+++
T Consensus 12 ~~~~~~a~~~~----~-----~~~Ty~el~~~~~~~a~~L~-----~~~~V~l~~~~~~~~~~~~la~~~~G~~~v~l~~ 77 (471)
T PRK07787 12 AADIADAVRIG----G-----RVLSRSDLAGAATAVAERVA-----GARRVAVLATPTLATVLAVVGALIAGVPVVPVPP 77 (471)
T ss_pred ccCCceEEEeC----C-----cEEEHHHHHHHHHHHHHHhc-----cCCEEEEECCCCHHHHHHHHHHHhcCcEEeecCC
Confidence 45788888753 3 57999999999999999996 5799999999999999999999999999999999
Q ss_pred CCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCceEeeHHHHHhccccCCCC
Q 010568 136 TLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFD 215 (507)
Q Consensus 136 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 215 (507)
..+.+++..+++.++++.++++.+... ..+..+..... ...+ ..
T Consensus 78 ~~~~~~l~~~l~~~~~~~il~~~~~~~----------~~~~~~~~~~~---------------~~~~-----------~~ 121 (471)
T PRK07787 78 DSGVAERRHILADSGAQAWLGPAPDDP----------AGLPHVPVRLH---------------ARSW-----------HR 121 (471)
T ss_pred CCChHHHHHHHHhcCCCEEEecCCccc----------ccccceeeecc---------------cccc-----------cc
Confidence 999999999999999999999763110 00001000000 0000 01
Q ss_pred CCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHH-HHHHHHcCC
Q 010568 216 LPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAI-EEVFISNGA 294 (507)
Q Consensus 216 ~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~ 294 (507)
.....++++++++|||||||.||+|.++|.++...+..+...+ ++..++++++.+|++|.+|+.. ++.++..|+
T Consensus 122 ~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~ 196 (471)
T PRK07787 122 YPEPDPDAPALIVYTSGTTGPPKGVVLSRRAIAADLDALAEAW-----QWTADDVLVHGLPLFHVHGLVLGVLGPLRIGN 196 (471)
T ss_pred CCCCCCCceEEEEECCCCCCCCCEEEEeHHHHHHHHHHHHHhc-----CCCccceeEeccCCeeechhHHHHHHHHhcCC
Confidence 1123568999999999999999999999999999887754433 6788899999999999999876 778899999
Q ss_pred EEEEecC-CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhHHhhhhcCCCCCCCchhhhH
Q 010568 295 AIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADK 373 (507)
Q Consensus 295 ~v~l~~~-~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 373 (507)
++++.+. ++..+++.++ +++|+++++|.++..+++.....
T Consensus 197 ~~~~~~~~~~~~~~~~i~-~~~t~~~~~P~~~~~l~~~~~~~-------------------------------------- 237 (471)
T PRK07787 197 RFVHTGRPTPEAYAQALS-EGGTLYFGVPTVWSRIAADPEAA-------------------------------------- 237 (471)
T ss_pred EEEecCCCCHHHHHHHHh-hCceEEEcchHHHHHHHhCcccc--------------------------------------
Confidence 9998765 9999999999 99999999999998876411000
Q ss_pred HhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhCCcEEeecccccCccceeccCCCCCccCCcccccccCceEEEee
Q 010568 374 IVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLES 453 (507)
Q Consensus 374 ~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~s~G~p~pg~~i~ivd 453 (507)
....++|.+++||+++++.+.+.+.+.++.++++.||+||++..+..... ....++++|+|++|++++|+|
T Consensus 238 --------~~l~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~-~~~~~~~vG~~~~g~~~~i~d 308 (471)
T PRK07787 238 --------RALRGARLLVSGSAALPVPVFDRLAALTGHRPVERYGMTETLITLSTRAD-GERRPGWVGLPLAGVETRLVD 308 (471)
T ss_pred --------ccccceeEEEECCCCCCHHHHHHHHHHcCCCeecccCccccCcceecCCC-CcccCCcccccCCCcEEEEEC
Confidence 00137899999999999999999999889999999999999865444332 233457899999999999999
Q ss_pred cCCCccccCCCCCCceEEEecCCccccccCChhhhhhhc-ccCceeec-cEEEecC
Q 010568 454 VPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTG-MGVWEQL 507 (507)
Q Consensus 454 ~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~-~dgw~~TG-lg~~d~d 507 (507)
+++..++.+.++.|||+++|++++.||+++++.+.+.| .+|||+|| +|++|+|
T Consensus 309 -~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~t~~~~~~~~~~~TGDlg~~~~d 363 (471)
T PRK07787 309 -EDGGPVPHDGETVGELQVRGPTLFDGYLNRPDATAAAFTADGWFRTGDVAVVDPD 363 (471)
T ss_pred -CCCCCCCCCCCCceEEEEECcccchhhcCChhhchhcccCCCceecCceEEEcCC
Confidence 77766654323489999999999999999999999999 58999999 9999876
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-45 Score=414.46 Aligned_cols=388 Identities=18% Similarity=0.220 Sum_probs=297.6
Q ss_pred CCCCCHHHHHHHHHHhCCC-CCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHH
Q 010568 41 PGMESCWDVFRMAVERNPN-NRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIG 119 (507)
Q Consensus 41 ~~~~tl~~~l~~~~~~~pd-~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~ 119 (507)
+...++.+.|.++++++|+ +.++.+. ++ +++||+||.++++++|+.|++ |+++||+|+++++|+++++++
T Consensus 628 ~~~~~~~~~l~~~~~~~~~~~~ai~~~---~~-----~~~Ty~el~~~~~~lA~~L~~-g~~~gd~V~i~~~n~~~~~~~ 698 (1140)
T PRK06814 628 DYDRTLFEALIEAAKIHGFKKLAVEDP---VN-----GPLTYRKLLTGAFVLGRKLKK-NTPPGENVGVMLPNANGAAVT 698 (1140)
T ss_pred cccCCHHHHHHHHHHHcCCCCeEeECC---CC-----CccCHHHHHHHHHHHHHHHHh-cCCCCCeEEEEcCCchHHHHH
Confidence 4457788999999999874 5665532 22 469999999999999999975 999999999999999999999
Q ss_pred HHHHHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHh--hcCCCCCCCccEEEEecCCChhhHHHHhhcCc
Q 010568 120 MEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEML--KTFPKTTEHLKTIVSFSKVKPEQREEIEKYGL 197 (507)
Q Consensus 120 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 197 (507)
++||+++|+++++++|..+.+++.+++++++++++|++++...... ...... +....++.+++......
T Consensus 699 ~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~-------- 769 (1140)
T PRK06814 699 FFALQSAGRVPAMINFSAGIANILSACKAAQVKTVLTSRAFIEKARLGPLIEAL-EFGIRIIYLEDVRAQIG-------- 769 (1140)
T ss_pred HHHHHHCCCEEEEcCCCCCHHHHHHHHHHcCCCEEEecHHHHhhhcchhHHHHh-ccCceEEEehHhhccCC--------
Confidence 9999999999999999999999999999999999999875433210 000001 12223444442211000
Q ss_pred eEeeHHHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecCh
Q 010568 198 AVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPL 277 (507)
Q Consensus 198 ~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl 277 (507)
....+.+....... ....+...++++++++|||||||.||+|.++|+++..........+ ++..+|++++.+|+
T Consensus 770 ~~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~-----~~~~~d~~l~~~pl 843 (1140)
T PRK06814 770 LADKIKGLLAGRFP-LVYFCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARI-----DFSPEDKVFNALPV 843 (1140)
T ss_pred hHHHHHHHhhccCC-ccccCCCCCCCcEEEEECCCccCCCcEEEecHHHHHHHHHHHHHhh-----CCCCcCEEEEecch
Confidence 00011111111111 1111234679999999999999999999999999998887754433 68889999999999
Q ss_pred HHHHHHH-HHHHHHHcCCEEEEecC--CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhH
Q 010568 278 AHIFDRA-IEEVFISNGAAIGFWRG--DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYK 354 (507)
Q Consensus 278 ~h~~g~~-~~~~~l~~G~~v~l~~~--~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (507)
+|.+++. .++.++..|+++++.+. +...+.+.++++++|++.++|++++.+.+...
T Consensus 844 ~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~--------------------- 902 (1140)
T PRK06814 844 FHSFGLTGGLVLPLLSGVKVFLYPSPLHYRIIPELIYDTNATILFGTDTFLNGYARYAH--------------------- 902 (1140)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEecCcccHHHHHHHHHhcCCEEEEecHHHHHHHHhhcc---------------------
Confidence 9999985 47788999999998764 66788899999999999999999988754210
Q ss_pred HhhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhCCcEEeecccccCccceeccCCCCC
Q 010568 355 FHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEM 434 (507)
Q Consensus 355 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~ 434 (507)
..++ +++|.+++||+++++++.+.+.+.++.++++.||+||++..+..+.+..
T Consensus 903 ------------------~~~~--------~~lr~v~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~- 955 (1140)
T PRK06814 903 ------------------PYDF--------RSLRYVFAGAEKVKEETRQTWMEKFGIRILEGYGVTETAPVIALNTPMH- 955 (1140)
T ss_pred ------------------cccc--------cceeEEEEcCCcCCHHHHHHHHHHhCCcEEeccccccccceEEecCCCC-
Confidence 0001 3799999999999999999999989999999999999988766554333
Q ss_pred ccCCcccccccCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhh-hcccCceeec-cEEEecC
Q 010568 435 SMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKE-VMVDGWFHTG-MGVWEQL 507 (507)
Q Consensus 435 ~~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~-~~~dgw~~TG-lg~~d~d 507 (507)
...+++|+|+||+++++.+ .++ .++.|||+++|++++.||+++++.... ...||||+|| +|++|+|
T Consensus 956 ~~~~~vG~p~~g~~~~~~~-~~~------~~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~d~d 1023 (1140)
T PRK06814 956 NKAGTVGRLLPGIEYRLEP-VPG------IDEGGRLFVRGPNVMLGYLRAENPGVLEPPADGWYDTGDIVTIDEE 1023 (1140)
T ss_pred CCCCcCCccCCCCeEEEee-cCC------CCCceEEEEeCCCcchhhcCCCCCCccccCCCCeEecCCEEEECCC
Confidence 3358999999999999987 332 247899999999999999987653322 2268999999 9999986
|
|
| >PRK07798 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-44 Score=374.27 Aligned_cols=394 Identities=19% Similarity=0.207 Sum_probs=304.7
Q ss_pred CHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHHHHHH
Q 010568 45 SCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACN 124 (507)
Q Consensus 45 tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~ 124 (507)
|+.++|++.++++||++|+++. + +.+||.||.++++++|+.|.+.|+++||+|+++++|++++++++|||+
T Consensus 4 ~l~~~~~~~a~~~p~~~a~~~~---~------~~~ty~el~~~~~~la~~L~~~g~~~~~~v~v~~~n~~~~~~~~~a~~ 74 (533)
T PRK07798 4 NIADLFEAVADAVPDRVALVCG---D------RRLTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAF 74 (533)
T ss_pred cHHHHHHHHHHhCCCceEEEEC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHH
Confidence 7999999999999999999864 2 469999999999999999999999999999999999999999999999
Q ss_pred hcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCceEeeHHH
Q 010568 125 ALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDE 204 (507)
Q Consensus 125 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (507)
++|++++++++.++.+++.++++.++++.+|++......+.+.... .+..+.++.+++..... ......++++
T Consensus 75 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 147 (533)
T PRK07798 75 KARAVPVNVNYRYVEDELRYLLDDSDAVALVYEREFAPRVAEVLPR-LPKLRTLVVVEDGSGND------LLPGAVDYED 147 (533)
T ss_pred hcCeEEEecCcCCCHHHHHHHHhhcCCCEEEEchhhHHHHHHHhcc-CCCccEEEEecCCcccc------cCCccccHHH
Confidence 9999999999999999999999999999999998766665554332 24555666666432210 0112446777
Q ss_pred HHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhh----ccccC------CCCcEEEEe
Q 010568 205 FLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLES----VNEKL------TSEDVYVSY 274 (507)
Q Consensus 205 l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~----~~~~~------~~~d~~l~~ 274 (507)
++....... .. .....+.++++|||||||.||+|+++|.++...+......+.. ....+ ..+++++..
T Consensus 148 ~~~~~~~~~-~~-~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (533)
T PRK07798 148 ALAAGSPER-DF-GERSPDDLYLLYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPA 225 (533)
T ss_pred HHhccCCcC-CC-CCCCCCceEEEECCCCCCCCcEEEEecHHHHHHHhhhhhhhcccchhhhhhhcccccCCCCceEEEe
Confidence 765432211 11 1223455799999999999999999999987665442221100 00111 567899999
Q ss_pred cChHHHHHHHHHHHHHHcCCEEEEec--C-CHHHHHHHhhhhCCeEEecCcHHHHH-HHHHHHHhhhccchhHHHHHHHH
Q 010568 275 LPLAHIFDRAIEEVFISNGAAIGFWR--G-DVKLLLEDIGELKPTIFCAVPRVLDR-IYSGLNQKISSGGLLKKTLFNIA 350 (507)
Q Consensus 275 ~pl~h~~g~~~~~~~l~~G~~v~l~~--~-~~~~~~~~i~~~~vt~l~~~P~~l~~-l~~~~~~~~~~~~~~~~~~~~~~ 350 (507)
+|++|..++..++.+++.|+++++.+ . ++..+++.++++++|.+.++|..+.. +...+. ..
T Consensus 226 ~pl~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~-~~-------------- 290 (533)
T PRK07798 226 PPLMHGAGQWAAFAALFSGQTVVLLPDVRFDADEVWRTIEREKVNVITIVGDAMARPLLDALE-AR-------------- 290 (533)
T ss_pred cchhhhhhHHHHHHHHhcCceEEEecCCCcCHHHHHHHHHHhCCeEEEechHHHHHHHHHHhc-cc--------------
Confidence 99999999998899999999999998 4 89999999999999999999987654 322211 00
Q ss_pred HHhHHhhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhh-CCcEEeecccccCccceecc
Q 010568 351 YSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVS 429 (507)
Q Consensus 351 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~-~~~v~~~YG~tE~~~~~~~~ 429 (507)
.....+++|.+++||+++++++.+++++.+ +..+++.||+||++.+....
T Consensus 291 -----------------------------~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~ 341 (533)
T PRK07798 291 -----------------------------GPYDLSSLFAIASGGALFSPSVKEALLELLPNVVLTDSIGSSETGFGGSGT 341 (533)
T ss_pred -----------------------------ccCCCCceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeecccccccccccC
Confidence 000114799999999999999999999887 78999999999997655443
Q ss_pred CCCCCccCCccc--ccccCceEEEeecCCCccccCCCCCC--ceEEEecCCccccccCChhhhhhhcc--c--Cceeec-
Q 010568 430 LPNEMSMIGTVG--PPVPNVDVCLESVPEMEYDALSSTPR--GEVCVKGSTVFSGYYKREDLTKEVMV--D--GWFHTG- 500 (507)
Q Consensus 430 ~~~~~~~~~s~G--~p~pg~~i~ivd~~~~~~~~~~~g~~--Gel~v~g~~v~~gY~~~~~~~~~~~~--d--gw~~TG- 500 (507)
..... ...| ++.++..++|+| +++..++.+ +. |+|+ +++.++.||+++++.+.+.|. + +||+||
T Consensus 342 ~~~~~---~~~g~~~~~~~~~~~i~~-~~~~~~~~g--~~~~g~l~-~~~~~~~gy~~~~~~t~~~f~~~~~~~~~~TGD 414 (533)
T PRK07798 342 VAKGA---VHTGGPRFTIGPRTVVLD-EDGNPVEPG--SGEIGWIA-RRGHIPLGYYKDPEKTAETFPTIDGVRYAIPGD 414 (533)
T ss_pred CCCCC---ccCCCCccCCCceEEEEC-CCCCCCCCC--CCCeeEEE-eecCccccccCChhhhHHhhccCCCCceEEcCc
Confidence 22221 2334 788999999999 888765554 44 6665 567899999999999999882 3 599999
Q ss_pred cEEEecC
Q 010568 501 MGVWEQL 507 (507)
Q Consensus 501 lg~~d~d 507 (507)
+|++|+|
T Consensus 415 ~~~~~~~ 421 (533)
T PRK07798 415 RARVEAD 421 (533)
T ss_pred EEEEcCC
Confidence 9999875
|
|
| >PRK05850 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-45 Score=383.30 Aligned_cols=390 Identities=18% Similarity=0.241 Sum_probs=285.4
Q ss_pred CHHHHHHHHHHhCCCCCceeeEeeccC---cCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHHH
Q 010568 45 SCWDVFRMAVERNPNNRMLGQREIVDG---KAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGME 121 (507)
Q Consensus 45 tl~~~l~~~~~~~pd~~a~~~~~~~~~---~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~l 121 (507)
++.++|++++..+||++|+++. +. ..+..+.+||.||..+++++|++|.+.| .+||+|+++++|++++++++|
T Consensus 2 s~~~~l~~~a~~~p~~~a~~~~---~~~~~~~~~~~~lty~eL~~~v~~~A~~L~~~g-~~gd~V~l~~~n~~~~~~~~l 77 (578)
T PRK05850 2 SVPSLLRERASLQPDDAAFTFI---DYEQDPAGVAETLTWSQLYRRTLNVAEELRRHG-STGDRAVILAPQGLEYIVAFL 77 (578)
T ss_pred cHHHHHHHHHhcCCCceEEEEE---ccCCCCCCceeeecHHHHHHHHHHHHHHHHHhC-CCCCEEEEEcCCcccHHHHHH
Confidence 6889999999999999999865 31 1122468999999999999999999999 689999999999999999999
Q ss_pred HHHhcCCEEeeccC---CCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCC-CCCccEEEEecCCChhhHHHHhhcCc
Q 010568 122 ACNALGLHCVPLYD---TLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKT-TEHLKTIVSFSKVKPEQREEIEKYGL 197 (507)
Q Consensus 122 A~~~~G~~~v~l~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~ 197 (507)
||+++|++++|+++ ..+.+++.++++.++++++|++.+....+....... ......++.++..
T Consensus 78 A~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 144 (578)
T PRK05850 78 GALQAGLIAVPLSVPQGGAHDERVSAVLRDTSPSVVLTTSAVVDDVTEYVAPQPGQSAPPVIEVDLL------------- 144 (578)
T ss_pred HHHHcCceEEecCCCCccchHHHHHHHHHhcCCCEEEEcHHHHHHHHHHHhhcccccccceEeeccc-------------
Confidence 99999999999997 457889999999999999999887655443321110 0111122222110
Q ss_pred eEeeHHHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhc-cccCCCCcEEEEecC
Q 010568 198 AVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESV-NEKLTSEDVYVSYLP 276 (507)
Q Consensus 198 ~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~-~~~~~~~d~~l~~~p 276 (507)
++.. ..........++++++++|||||||.||+|.++|.+++.++......+... ......++++++++|
T Consensus 145 ------~~~~---~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p 215 (578)
T PRK05850 145 ------DLDS---PRGSDARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDTTVVSWLP 215 (578)
T ss_pred ------cccc---CCccccCCCCCCCeEEEEeCCCCCCCCceEEEeHHHHHHHHHHHHHhhccccccCCCCcceEEEECC
Confidence 0000 000111234568999999999999999999999999988776643321111 011356789999999
Q ss_pred hHHHHHHHH-HHHHHHcCCEEEEecC-----CHHHHHHHhhhhCCeEEecCcHHHHHHHHH-HHHhhhccchhHHHHHHH
Q 010568 277 LAHIFDRAI-EEVFISNGAAIGFWRG-----DVKLLLEDIGELKPTIFCAVPRVLDRIYSG-LNQKISSGGLLKKTLFNI 349 (507)
Q Consensus 277 l~h~~g~~~-~~~~l~~G~~v~l~~~-----~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~-~~~~~~~~~~~~~~~~~~ 349 (507)
++|.+|+.. ++.+++.|+++++.+. ++..+++.+++++++.+ .+|.++..++.. .....
T Consensus 216 l~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~-~~p~~~~~~~~~~~~~~~------------- 281 (578)
T PRK05850 216 FYHDMGLVLGVCAPILGGCPAVLTSPVAFLQRPARWMQLLASNPHAFS-AAPNFAFELAVRKTSDDD------------- 281 (578)
T ss_pred CCCCchhHHHHHHHHhcCCcEEEeCHHHHHHCHHHHHHHHHHcCCeEE-eCCcHHHHHHHHhcchhh-------------
Confidence 999999876 7888999999998863 68999999999999854 666654443221 10000
Q ss_pred HHHhHHhhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhC------CcEEeecccccCc
Q 010568 350 AYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVAC------AHVLQGYGLTETC 423 (507)
Q Consensus 350 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~------~~v~~~YG~tE~~ 423 (507)
....++ +++|.+++||+++++++.++|.+.++ ..+++.||+||++
T Consensus 282 ---------------------~~~~~~--------~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~ 332 (578)
T PRK05850 282 ---------------------MAGLDL--------GGVLGIISGSERVHPATLKRFADRFAPFNLRETAIRPSYGLAEAT 332 (578)
T ss_pred ---------------------hcCcch--------hhheeEEECcCCCCHHHHHHHHHHHHhcCcCcccccCccchhhhh
Confidence 000011 27899999999999999999988762 3689999999987
Q ss_pred cceeccCCCCC------------------------ccCCcccccccCceEEEeecCCCccccCCCCCCceEEEecCCccc
Q 010568 424 AGTFVSLPNEM------------------------SMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFS 479 (507)
Q Consensus 424 ~~~~~~~~~~~------------------------~~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~ 479 (507)
..+........ ....++|.|. +.+++|+| +++. .+++.|+.|||+|+|++++.
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~g~p~-~~~~~ivd-~~~~-~~~~~g~~Gel~v~g~~~~~ 409 (578)
T PRK05850 333 VYVATREPGQPPESVRFDYEKLSAGHAKRCETGGGTPLVSYGSPR-SPTVRIVD-PDTC-IECPAGTVGEIWVHGDNVAA 409 (578)
T ss_pred hheeccCCCCCceEEEECHHHHhCCceEecCCCCCceEEeccCCC-CCEEEEEc-CCCC-cCCCCCCEEEEEEecCcccc
Confidence 65543322110 0011345554 57999998 5432 33456699999999999999
Q ss_pred cccCChhhhhhhcc------------cCceeec-cEEEec
Q 010568 480 GYYKREDLTKEVMV------------DGWFHTG-MGVWEQ 506 (507)
Q Consensus 480 gY~~~~~~~~~~~~------------dgw~~TG-lg~~d~ 506 (507)
||+++|+.+++.|. +|||+|| +|++|+
T Consensus 410 gY~~~~~~t~~~f~~~~~~~~~~~~~~~w~~TGDl~~~~~ 449 (578)
T PRK05850 410 GYWQKPEETERTFGATLVDPSPGTPEGPWLRTGDLGFISE 449 (578)
T ss_pred cccCChhhhHHHhhcccccccccCCCCCeeeccceeeEEC
Confidence 99999999999883 4799999 999984
|
|
| >PRK08276 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-44 Score=374.08 Aligned_cols=368 Identities=20% Similarity=0.207 Sum_probs=289.9
Q ss_pred EEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHHHHHHhcCCEEeeccCCCChHHHHHHHhhcCccEEEe
Q 010568 77 VWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFV 156 (507)
Q Consensus 77 ~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~ 156 (507)
+.+||.||.++++++|++|.+.|+++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++.+|+
T Consensus 10 ~~~ty~el~~~v~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~ii~ 89 (502)
T PRK08276 10 EVVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLTAAEIAYIVDDSGAKVLIV 89 (502)
T ss_pred cEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHhcCCCCEEEE
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCceEeeHHHHHhccccCCCCCCCCCCCCeEEEEeccCCCCC
Q 010568 157 EEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGD 236 (507)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~ 236 (507)
+......+.+.........+.++..+.... ....|++...... .......++.++++|||||||.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~----~~~~~~~~~~a~i~~TSGtTG~ 154 (502)
T PRK08276 90 SAALADTAAELAAELPAGVPLLLVVAGPVP-----------GFRSYEEALAAQP----DTPIADETAGADMLYSSGTTGR 154 (502)
T ss_pred ccchhhHHHHHhhhccccccEEEEeCCCCC-----------ccccHHHHHhcCC----CCCCCCCCcceEEEECCCCCCC
Confidence 987665544433222114445554432111 2234555543221 1122345678999999999999
Q ss_pred CceeeeccHHHHHHHh--hhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHHcCCEEEEecC-CHHHHHHHhhhh
Q 010568 237 PKGVMVSNENIVTFIA--GVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRG-DVKLLLEDIGEL 313 (507)
Q Consensus 237 pK~v~~sh~~l~~~~~--~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~v~l~~~-~~~~~~~~i~~~ 313 (507)
||+|+++|.++..... ..... .........++++++.+|++|.+++...+.++..|+++++.+. ++..+++.++++
T Consensus 155 PK~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~ 233 (502)
T PRK08276 155 PKGIKRPLPGLDPDEAPGMMLAL-LGFGMYGGPDSVYLSPAPLYHTAPLRFGMSALALGGTVVVMEKFDAEEALALIERY 233 (502)
T ss_pred CceEEEccCCcchhhhhHHhhhh-hhhcccCCCCCEEEEcCcHHHHHHHHHHHHHHhccceEEEcCCCCHHHHHHHHHHh
Confidence 9999998877543321 11000 1111123567899999999999998888889999999988876 899999999999
Q ss_pred CCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhHHhhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEc
Q 010568 314 KPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSG 393 (507)
Q Consensus 314 ~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~ 393 (507)
++|++.++|+++..+++..... ....++ +++|.+++|
T Consensus 234 ~~t~~~~~P~~~~~l~~~~~~~-----------------------------------~~~~~~--------~~lr~i~~~ 270 (502)
T PRK08276 234 RVTHSQLVPTMFVRMLKLPEEV-----------------------------------RARYDV--------SSLRVAIHA 270 (502)
T ss_pred CCeEEEehHHHHHHHHhCcccc-----------------------------------CCCCCc--------ccceEEEec
Confidence 9999999999998886421000 001111 379999999
Q ss_pred CCCCCHHHHHHHHHhhCCcEEeecccccCccceeccCCCCCccCCcccccccCceEEEeecCCCccccCCCCCCceEEEe
Q 010568 394 AAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVK 473 (507)
Q Consensus 394 G~~l~~~l~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~ 473 (507)
|++++.++.+.+.+.++..+++.||+||++.+++..........+++|+|+ +++++|+| +++..++ .|+.|||+++
T Consensus 271 g~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d-~~~~~~~--~g~~Gel~v~ 346 (502)
T PRK08276 271 AAPCPVEVKRAMIDWWGPIIHEYYASSEGGGVTVITSEDWLAHPGSVGKAV-LGEVRILD-EDGNELP--PGEIGTVYFE 346 (502)
T ss_pred CCCCCHHHHHHHHHHhCcHhhhhcccccccceeEecCccccccCCCcceec-ccEEEEEC-CCCCCCc--CCCceEEEEE
Confidence 999999999999998899999999999999876665544334457899999 88999999 7766544 5589999999
Q ss_pred cCCccccccCChhhhhhhc-ccCceeec-cEEEecC
Q 010568 474 GSTVFSGYYKREDLTKEVM-VDGWFHTG-MGVWEQL 507 (507)
Q Consensus 474 g~~v~~gY~~~~~~~~~~~-~dgw~~TG-lg~~d~d 507 (507)
|+.++.||+++++.+...+ .||||+|| +|++|+|
T Consensus 347 ~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~ 382 (502)
T PRK08276 347 MDGYPFEYHNDPEKTAAARNPHGWVTVGDVGYLDED 382 (502)
T ss_pred CCCccchhcCCHHHHHHHhcCCCceeecceEEEcCC
Confidence 9999999999999999999 55999999 9999875
|
|
| >TIGR01733 AA-adenyl-dom amino acid adenylation domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-44 Score=362.83 Aligned_cols=348 Identities=22% Similarity=0.293 Sum_probs=282.9
Q ss_pred eHHHHHHHHHHHHHHHHH-CCCCCCCEEEEEeCCchhhHHHHHHHHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecC
Q 010568 80 TYKEVYDLVIKVVNAIRT-CGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEE 158 (507)
Q Consensus 80 Ty~el~~~~~~~a~~L~~-~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 158 (507)
||.||.+.++++|+.|.+ .|+++||+|+++++|+++++++++||+++|++++|+++..+.+++.++++.++++.++++.
T Consensus 1 t~~~l~~~~~~~a~~l~~~~g~~~gd~v~l~~~n~~~~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~ii~~~ 80 (408)
T TIGR01733 1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGARLLLTDS 80 (408)
T ss_pred CHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHhcCCCEEEEcC
Confidence 799999999999999998 8999999999999999999999999999999999999999999999999999999999998
Q ss_pred CChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCceEeeHHHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCc
Q 010568 159 KKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPK 238 (507)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK 238 (507)
+....+..... .+..+... +...................+++++++|||||||.||
T Consensus 81 ~~~~~~~~~~~-------~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTtG~pK 136 (408)
T TIGR01733 81 ALASRLAGLVL-------PIILVDPL-----------------ELAALDDAPAPPPPDAPSGPDDLAYVIYTSGSTGRPK 136 (408)
T ss_pred chhhhccccCC-------ceEEechh-----------------hhhhcccccccccccCCCCCCCcEEEEEcCCCCCCCC
Confidence 76554322211 11111110 0000000000001111135789999999999999999
Q ss_pred eeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHHcCCEEEEecC----CHHHHHHHhhhhC
Q 010568 239 GVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRG----DVKLLLEDIGELK 314 (507)
Q Consensus 239 ~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~v~l~~~----~~~~~~~~i~~~~ 314 (507)
+|.++|.++......+...+ .+..+|++++..|++|.+++..++.++..|+++++.+. .+..+.+.+++++
T Consensus 137 ~v~~s~~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (408)
T TIGR01733 137 GVVVTHRSLVNLLAWLARRY-----GLDPDDRVLQFASLSFDASVEEIFGTLLAGATLVVPPEDEERDAALLAALIAEHP 211 (408)
T ss_pred EEEeccHHHHHHHHHHHHhc-----CCCCCceEEEecCCccchhHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHcC
Confidence 99999999999888865544 67789999999999999999889999999999998875 2688999999999
Q ss_pred CeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhHHhhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcC
Q 010568 315 PTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGA 394 (507)
Q Consensus 315 vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G 394 (507)
+|.+.++|.+++.+.+... ...+++|.+++||
T Consensus 212 ~t~l~~~p~~~~~l~~~~~------------------------------------------------~~~~~l~~v~~~g 243 (408)
T TIGR01733 212 VTVLNLTPSLLALLAAALP------------------------------------------------PALASLRLVILGG 243 (408)
T ss_pred ceEEEeCHHHHHHHHHhhh------------------------------------------------hcccCceEEEEeC
Confidence 9999999999999876322 0113899999999
Q ss_pred CCCCHHHHHHHHHhhC-CcEEeecccccCccceeccCCCCCc----cCCcccccccCceEEEeecCCCccccCCCCCCce
Q 010568 395 APLTPHVETFLRVVAC-AHVLQGYGLTETCAGTFVSLPNEMS----MIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGE 469 (507)
Q Consensus 395 ~~l~~~l~~~~~~~~~-~~v~~~YG~tE~~~~~~~~~~~~~~----~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Ge 469 (507)
+++++++.+.+.+.++ +.+++.||+||+++++......... .+.++|+|+++++++|+| +++..+ +.|+.||
T Consensus 244 ~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~~~--~~g~~Ge 320 (408)
T TIGR01733 244 EALTPALVDRWRARGPGARLINLYGPTETTVWSTATLVDADDAPRESPVPIGRPLANTRLYVLD-DDLRPV--PVGVVGE 320 (408)
T ss_pred ccCCHHHHHHHHHhCCCcEEEecccCCceEEEEEEEEcCccccCCccccccCcccCCceEEEEC-CCCCCC--CCCCceE
Confidence 9999999999999987 8999999999999877533222211 157899999999999999 765544 4568999
Q ss_pred EEEecCCccccccCChhhhhhhcc-c------C--ceeec-cEEEecC
Q 010568 470 VCVKGSTVFSGYYKREDLTKEVMV-D------G--WFHTG-MGVWEQL 507 (507)
Q Consensus 470 l~v~g~~v~~gY~~~~~~~~~~~~-d------g--w~~TG-lg~~d~d 507 (507)
|+++|+.++.||+++++.+.+.|. + | ||+|| +|++|+|
T Consensus 321 l~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl~~~d~~ 368 (408)
T TIGR01733 321 LYIGGPGVARGYLNRPELTAERFVPDPFAGGDGARLYRTGDLVRYLPD 368 (408)
T ss_pred EEecCccccccccCChhhhhcceeeCCCCCCCCceEEECCceEEEcCC
Confidence 999999999999999999998882 2 3 99999 9999975
|
This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. |
| >PRK07768 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-44 Score=374.73 Aligned_cols=381 Identities=21% Similarity=0.266 Sum_probs=293.8
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHHHH
Q 010568 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (507)
Q Consensus 43 ~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (507)
|.++.+.|...+..+|+.+++... ++. +.+||.||+++++++|++|.+.|+++||+|+|+++|+++++++++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~----~~~ty~el~~~v~~~a~~L~~~g~~~gd~V~l~~~~~~~~~~~~la 73 (545)
T PRK07768 1 MSRFTEKMYANARTSPRGMVTGEP---DAP----VRHTWGEVHERARRIAGGLAAAGVGPGDAVAVLAGAPVEIAPTAQG 73 (545)
T ss_pred CchHHHHHHHHhhCCCcceEEecC---CCc----eEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHH
Confidence 457889899999999999998765 443 6799999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeeccCCCChHHH-------HHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhc
Q 010568 123 CNALGLHCVPLYDTLGAGAV-------EFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKY 195 (507)
Q Consensus 123 ~~~~G~~~v~l~~~~~~~~l-------~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 195 (507)
|+++|++++++++..+.+++ ..+++.++++.+|+++......... ...
T Consensus 74 ~~~~g~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~------------------------ 128 (545)
T PRK07768 74 LWMRGASLTMLHQPTPRTDLAVWAEDTLRVIGMIGAKAVVVGEPFLAAAPVL-EEK------------------------ 128 (545)
T ss_pred HHHcCccccccCCCCCcchhHHHHHHHHHHHHhCCCCEEEecchhhhhhhhh-ccc------------------------
Confidence 99999999999988776544 4567778999999987543322111 100
Q ss_pred CceEeeHHHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCC-cEEEEe
Q 010568 196 GLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSE-DVYVSY 274 (507)
Q Consensus 196 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~-d~~l~~ 274 (507)
......++++..... .......++++++++|||||||.||+|.++|.+++.....+...+ ++..+ |++++.
T Consensus 129 ~~~~~~~~~l~~~~~---~~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~-----~~~~~~d~~~~~ 200 (545)
T PRK07768 129 GIRVLTVADLLAADP---IDPVETGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAA-----EFDVETDVMVSW 200 (545)
T ss_pred CCceeehhhhcccCC---CCcCCCCCCCEEEEEeCCCCCCCCceEEEcHHHHHHHHHHHHHhc-----CCCCCCceeEEe
Confidence 112345555554321 122344679999999999999999999999999988877654433 56665 899999
Q ss_pred cChHHHHHHHH-HHHHHHcCCEEEEecC-----CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHH
Q 010568 275 LPLAHIFDRAI-EEVFISNGAAIGFWRG-----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFN 348 (507)
Q Consensus 275 ~pl~h~~g~~~-~~~~l~~G~~v~l~~~-----~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~ 348 (507)
+|++|..++.. +..++..|+++++.+. ++..+++.+++++++++...|.++..+...+......
T Consensus 201 ~p~~~~~g~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~---------- 270 (545)
T PRK07768 201 LPLFHDMGMVGFLTVPMYFGAELVKVTPMDFLRDPLLWAELISKYRGTMTAAPNFAYALLARRLRRQAKP---------- 270 (545)
T ss_pred CCCccchHHHHHHHHHHHCCceEEEeCHHHHHHhHHHHHHHHHHhCCEEEECchHHHHHHHHHHhccccc----------
Confidence 99999999875 5567999999888753 6788899999999999887777776655432111100
Q ss_pred HHHHhHHhhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHh---hCC---cEEeecccccC
Q 010568 349 IAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVV---ACA---HVLQGYGLTET 422 (507)
Q Consensus 349 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~---~~~---~v~~~YG~tE~ 422 (507)
...++ +++|.++++|+++++++.+.+.+. ++. .+++.||+||+
T Consensus 271 -----------------------~~~~~--------~~lr~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~yG~tE~ 319 (545)
T PRK07768 271 -----------------------GAFDL--------SSLRFALNGAEPIDPADVEDLLDAGARFGLRPEAILPAYGMAEA 319 (545)
T ss_pred -----------------------cCCCc--------hheeeEEeccCCCCHHHHHHHHHHHHhcCCCccccccccccccc
Confidence 00111 379999999999999999988874 454 49999999999
Q ss_pred ccceeccCCCC-------------------------CccCCcccccccCceEEEeecCCCccccCCCCCCceEEEecCCc
Q 010568 423 CAGTFVSLPNE-------------------------MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTV 477 (507)
Q Consensus 423 ~~~~~~~~~~~-------------------------~~~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v 477 (507)
+..++....+. ....+++|+|+||++++|+| ++++.++ .|+.|||+++|+.+
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~-~~~~~~~--~g~~Gel~v~~~~~ 396 (545)
T PRK07768 320 TLAVSFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRRLATLGPPLPGLEVRVVD-EDGQVLP--PRGVGVIELRGESV 396 (545)
T ss_pred ceEEEccCCCCCcceeeechhHhhccCceeccCCCCcceEEeccCCCCCCEEEEEC-CCCCCCC--CCCEEEEEEccCcc
Confidence 87665443221 11236899999999999999 7776554 55899999999999
Q ss_pred cccccCChhhhhhhcccCceeec-cEEEecC
Q 010568 478 FSGYYKREDLTKEVMVDGWFHTG-MGVWEQL 507 (507)
Q Consensus 478 ~~gY~~~~~~~~~~~~dgw~~TG-lg~~d~d 507 (507)
+.||++++......+.+|||+|| +|++|+|
T Consensus 397 ~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~ 427 (545)
T PRK07768 397 TPGYLTMDGFIPAQDADGWLDTGDLGYLTEE 427 (545)
T ss_pred cccccCCCCCcccccCCCeeeccceEEEecC
Confidence 99999876554444478999999 9999875
|
|
| >PRK12406 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-44 Score=371.27 Aligned_cols=375 Identities=19% Similarity=0.198 Sum_probs=288.2
Q ss_pred EEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHHHHHHhcCCEEeeccCCCChHHHHHHHhhcCccEEEe
Q 010568 77 VWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFV 156 (507)
Q Consensus 77 ~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~ 156 (507)
+.+||.||.++++++|++|.+.|+++||+|+++++|+++++++++||+++|+++++++|..+.+++.++++.++++.+|+
T Consensus 10 ~~~Ty~el~~~~~~la~~l~~~g~~~g~~V~v~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~i~~ 89 (509)
T PRK12406 10 RRRSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEIAYILEDSGARVLIA 89 (509)
T ss_pred eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCcccCHHHHHHHHhccCCcEEEE
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCChhHHhhcCCCCCCCccEEEEecCCChhh-HH----HHhhcCceEeeHHHHHhccccCCCCCCCCCCCCeEEEEecc
Q 010568 157 EEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQ-RE----EIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTS 231 (507)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TS 231 (507)
+......+..... ..+ .++......... .. ...........|+++..... .......+++++++|||
T Consensus 90 ~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~a~i~~TS 161 (509)
T PRK12406 90 HADLLHGLASALP---AGV-TVLSVPTPPEIAAAYRISPALLTPPAGAIDWEGWLAQQE----PYDGPPVPQPQSMIYTS 161 (509)
T ss_pred ccchhhhhhhhhh---ccc-ceeecccccccccccccccccccCCCCccCHHHHhcccC----ccCCCCCCCceEEEECC
Confidence 8776554433221 111 111111100000 00 00001112345666543321 11233568999999999
Q ss_pred CCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHHcCCEEEEecC-CHHHHHHHh
Q 010568 232 GTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRG-DVKLLLEDI 310 (507)
Q Consensus 232 GtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~v~l~~~-~~~~~~~~i 310 (507)
||||.||+|.++|.+.......... .....++..++++++.+|++|..+....+.++..|+++++.+. ++..+++.+
T Consensus 162 GtTG~PK~v~~s~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l 239 (509)
T PRK12406 162 GTTGHPKGVRRAAPTPEQAAAAEQM--RALIYGLKPGIRALLTGPLYHSAPNAYGLRAGRLGGVLVLQPRFDPEELLQLI 239 (509)
T ss_pred CCCCCCceEEEechhHHHHHHHHHh--hhhhcCCCCCceEEEEeCCcccchHHHHHHHHhhheEEEEccCCCHHHHHHHH
Confidence 9999999999877654332222110 2223367889999999999999888777777889999988776 999999999
Q ss_pred hhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhHHhhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEE
Q 010568 311 GELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLI 390 (507)
Q Consensus 311 ~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i 390 (507)
+++++|++.++|++++.++....... ...+ .+++|.+
T Consensus 240 ~~~~~t~~~~~P~~~~~l~~~~~~~~-----------------------------------~~~~--------~~~l~~v 276 (509)
T PRK12406 240 ERHRITHMHMVPTMFIRLLKLPEEVR-----------------------------------AKYD--------VSSLRHV 276 (509)
T ss_pred HHcCCeEEEccHHHHHHHHhCchhhc-----------------------------------ccCC--------CCceeEE
Confidence 99999999999999998764211100 0000 1379999
Q ss_pred EEcCCCCCHHHHHHHHHhhCCcEEeecccccCccceeccCCCCCccCCcccccccCceEEEeecCCCccccCCCCCCceE
Q 010568 391 LSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEV 470 (507)
Q Consensus 391 ~~~G~~l~~~l~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel 470 (507)
++||+++++++.+.+.+.++..+++.||+||++.+++....+....++++|+|+++++++|+| +++..++ .|+.|||
T Consensus 277 ~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~--~g~~Gel 353 (509)
T PRK12406 277 IHAAAPCPADVKRAMIEWWGPVIYEYYGSTESGAVTFATSEDALSHPGTVGKAAPGAELRFVD-EDGRPLP--QGEIGEI 353 (509)
T ss_pred EEcCCCCCHHHHHHHHHHcCCcEEeeccccccCceEecCcccccccCCCcCccCCCcEEEEEC-CCCCCCC--CCCceEE
Confidence 999999999999999998899999999999999877655444334458999999999999999 7776544 5589999
Q ss_pred EEecCCccc-cccCChhhhhhhcccCceeec-cEEEecC
Q 010568 471 CVKGSTVFS-GYYKREDLTKEVMVDGWFHTG-MGVWEQL 507 (507)
Q Consensus 471 ~v~g~~v~~-gY~~~~~~~~~~~~dgw~~TG-lg~~d~d 507 (507)
+++|+.++. +|+++++.+...+.+|||+|| +|++|+|
T Consensus 354 ~v~~~~~~~~~y~~~~~~~~~~~~~~~~~TGD~~~~~~~ 392 (509)
T PRK12406 354 YSRIAGNPDFTYHNKPEKRAEIDRGGFITSGDVGYLDAD 392 (509)
T ss_pred EEECCccccccccCCchhcccccCCCCeEEccEEEEcCC
Confidence 999999875 999999988887789999999 9999875
|
|
| >PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-43 Score=363.54 Aligned_cols=341 Identities=22% Similarity=0.310 Sum_probs=277.7
Q ss_pred CCHHHHH-HHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHHHH
Q 010568 44 ESCWDVF-RMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (507)
Q Consensus 44 ~tl~~~l-~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (507)
+++.+.. ++.++++||++|+++. + +.+||.||.++++++|..|.+.|+++||+|+++++|+++++++++|
T Consensus 2 ~~~~~~~~~~~a~~~~~~~a~~~~----~-----~~~ty~el~~~~~~~a~~L~~~g~~~~~~v~l~~~~~~~~~~~~la 72 (458)
T PRK09029 2 MIFSDWPWRHWAQVRPQAIALRLN----D-----EVLTWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPETLLAYLA 72 (458)
T ss_pred chhhcChHHHHHHhCCCceeeecC----C-----cceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHH
Confidence 4555554 5668899999999853 2 4699999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCceEeeH
Q 010568 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSW 202 (507)
Q Consensus 123 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 202 (507)
|+++|++++|+++..+.+++..+++.+++++++++.+... +.. +... .+
T Consensus 73 ~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~--------~~~~----------------------~~ 121 (458)
T PRK09029 73 LLQCGARVLPLNPQLPQPLLEELLPSLTLDFALVLEGENT-FSA--------LTSL----------------------HL 121 (458)
T ss_pred HHHcCCEEeecCCCCCHHHHHHHHHhcCCCEEEEcCcccc-hhh--------cccc----------------------cc
Confidence 9999999999999999999999999999999998876422 100 0000 00
Q ss_pred HHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHH
Q 010568 203 DEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282 (507)
Q Consensus 203 ~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g 282 (507)
. . ..........++++++++|||||||.||+|.++|.+++..+...... .+...+++++..+|++|.++
T Consensus 122 ~---~---~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~-----~~~~~~~~~l~~~p~~h~~g 190 (458)
T PRK09029 122 Q---L---VEGAHAVAWQPQRLATMTLTSGSTGLPKAAVHTAQAHLASAEGVLSL-----MPFTAQDSWLLSLPLFHVSG 190 (458)
T ss_pred c---c---ccccCcccCCCCCeEEEEECCCCCCCCCEEEEeHHHHHHHHHHHhhc-----CCCCccceEEEecCcHhhhh
Confidence 0 0 00111123467889999999999999999999999999988875443 36788999999999999999
Q ss_pred HHHHHHHHHcCCEEEEecCCHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhHHhhhhcCC
Q 010568 283 RAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGH 362 (507)
Q Consensus 283 ~~~~~~~l~~G~~v~l~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 362 (507)
+..++.++..|+++++.+. ..+++.+ .++|.+..+|+++..++.....
T Consensus 191 ~~~~~~~l~~G~~v~~~~~--~~~~~~i--~~~t~~~~~P~~~~~l~~~~~~---------------------------- 238 (458)
T PRK09029 191 QGIVWRWLYAGATLVVRDK--QPLEQAL--AGCTHASLVPTQLWRLLDNRSE---------------------------- 238 (458)
T ss_pred hHHHHHHHhCCceEEeCCh--HHHHHHH--hhceeeecChHHHHHHHhcccc----------------------------
Confidence 9878888999999998764 4566666 4899999999999887542100
Q ss_pred CCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhCCcEEeecccccCccceeccCCCCCccCCcccc
Q 010568 363 KHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGP 442 (507)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~s~G~ 442 (507)
..++|.+++||+++++.+.+.+.. ++.++++.||+||++........+ . ..++|+
T Consensus 239 ---------------------~~~l~~i~~gG~~~~~~~~~~~~~-~g~~~~~~YG~tE~~~~~~~~~~~--~-~~~~G~ 293 (458)
T PRK09029 239 ---------------------PLSLKAVLLGGAAIPVELTEQAEQ-QGIRCWCGYGLTEMASTVCAKRAD--G-LAGVGS 293 (458)
T ss_pred ---------------------CCcceEEEECCCCCCHHHHHHHHH-cCCcEeccccccccCcceeccCCC--C-CCCCCC
Confidence 026899999999999999999886 489999999999998755443322 2 257999
Q ss_pred cccCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhcccCceeec-cEEEec
Q 010568 443 PVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG-MGVWEQ 506 (507)
Q Consensus 443 p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~dgw~~TG-lg~~d~ 506 (507)
|++|++++|++ |||+|+|+.++.||+++++.+.....+|||+|| +|++|+
T Consensus 294 ~~~~~~~~i~~--------------gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~TGD~~~~~~ 344 (458)
T PRK09029 294 PLPGREVKLVD--------------GEIWLRGASLALGYWRQGQLVPLVNDEGWFATRDRGEWQN 344 (458)
T ss_pred CCCCCEEEEeC--------------CEEEEecCceeeeeecCccccccccCCCccCCCCcEEEeC
Confidence 99999999986 899999999999999999887655578999999 999983
|
|
| >TIGR01923 menE O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-43 Score=356.49 Aligned_cols=332 Identities=24% Similarity=0.341 Sum_probs=271.2
Q ss_pred eHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHHHHHHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCC
Q 010568 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEK 159 (507)
Q Consensus 80 Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 159 (507)
||+||.++++++|+.|.+.|+++||+|+++++|+++++++++||+++|++++++++.++.+++..+++..+++.+++++.
T Consensus 1 Ty~~l~~~~~~~a~~l~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (436)
T TIGR01923 1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTDSL 80 (436)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhcCcEEEecCcCCCHHHHHHHHHhcCCCEEEEcCc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred ChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCceEeeHHHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCce
Q 010568 160 KIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKG 239 (507)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~ 239 (507)
..... + . ...+.++................+++++++|||||||.||+
T Consensus 81 ~~~~~-------------~-~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~ 128 (436)
T TIGR01923 81 LEEKD-------------F-Q------------------ADSLDRIEAAGRYETSLSASFNMDQIATLMFTSGTTGKPKA 128 (436)
T ss_pred ccccc-------------e-e------------------ecchHhhhhcccccccccccCCcCceEEEEeCCCCCCCCcE
Confidence 32110 0 0 00111111111111111223456889999999999999999
Q ss_pred eeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHHcCCEEEEecCCHHHHHHHhhhhCCeEEe
Q 010568 240 VMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFC 319 (507)
Q Consensus 240 v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~v~l~~~~~~~~~~~i~~~~vt~l~ 319 (507)
|.++|.++...+...... .++.++|++++.+|++|.+++..++.++..|+++++.+.. ..+++.++++++|++.
T Consensus 129 v~~s~~~~~~~~~~~~~~-----~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~-~~~~~~l~~~~~t~~~ 202 (436)
T TIGR01923 129 VPHTFRNHYASAVGSKEN-----LGFTEDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDKF-NQLLEMIANERVTHIS 202 (436)
T ss_pred EEEehHHHHHHHHHHHhh-----cCCCCCceEEEccCcHhHHHHHHHHHHHhcCceEEecchH-HHHHHHHHHhCCeEEE
Confidence 999999999888875443 3788999999999999999998888999999999988643 4899999999999999
Q ss_pred cCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhHHhhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCH
Q 010568 320 AVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTP 399 (507)
Q Consensus 320 ~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~ 399 (507)
++|+++..+++.... . .++|.+++||+++++
T Consensus 203 ~~P~~l~~l~~~~~~-------------------------------------~------------~~l~~~~~~G~~~~~ 233 (436)
T TIGR01923 203 LVPTQLNRLLDEGGH-------------------------------------N------------ENLRKILLGGSAIPA 233 (436)
T ss_pred eHHHHHHHHHhCcCC-------------------------------------C------------CceEEEEECCCCCCH
Confidence 999999887652100 0 279999999999999
Q ss_pred HHHHHHHHhhCCcEEeecccccCccceeccCCCCCccCCcccccccCceEEEeecCCCccccCCCCCCceEEEecCCccc
Q 010568 400 HVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFS 479 (507)
Q Consensus 400 ~l~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~ 479 (507)
++.+.++. .++.+++.||+||++..++...........++|.|+++++++|.+ +++. +.|||+++|+.++.
T Consensus 234 ~~~~~~~~-~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~-------~~Gel~v~~~~~~~ 304 (436)
T TIGR01923 234 PLIEEAQQ-YGLPIYLSYGMTETCSQVTTATPEMLHARPDVGRPLAGREIKIKV-DNKE-------GHGEIMVKGANLMK 304 (436)
T ss_pred HHHHHHHH-hCCceeeEecCCccchhccCcCccccccccCCCccCCCcEEEEEe-CCCC-------CceEEEEECCccch
Confidence 99988876 599999999999998766554443322223599999999999954 3221 67999999999999
Q ss_pred cccCChhhhhhhcccCceeec-cEEEecC
Q 010568 480 GYYKREDLTKEVMVDGWFHTG-MGVWEQL 507 (507)
Q Consensus 480 gY~~~~~~~~~~~~dgw~~TG-lg~~d~d 507 (507)
||+++++.+...+.+|||+|| ++++|+|
T Consensus 305 gy~~~~~~~~~~~~~~~~~TGD~~~~~~d 333 (436)
T TIGR01923 305 GYLYQGELTPAFEQQGWFNTGDIGELDGE 333 (436)
T ss_pred hhCCChhhhhhhhcCCCeeccceEEEcCC
Confidence 999998888777788999999 9999875
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate. |
| >PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-43 Score=356.89 Aligned_cols=314 Identities=15% Similarity=0.158 Sum_probs=251.8
Q ss_pred EeHHHHHHHHHHHHHHHHHCCC-CCCCEEEEEeCCchhhHHHHHHHHhcCCEEeeccCCCChHHHHHHHhhcCccEEEec
Q 010568 79 KTYKEVYDLVIKVVNAIRTCGV-EERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVE 157 (507)
Q Consensus 79 ~Ty~el~~~~~~~a~~L~~~gv-~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~ 157 (507)
+.|+||.++++++|++|.+.|+ ++|++|+++++|+++++++++||+++|++++|++|.++.+++.++++.++++++|++
T Consensus 20 ~~~~el~~~~~~~a~~L~~~g~~~~~~~V~i~~~n~~e~~~~~~A~~~~G~~~vpl~~~~~~~~~~~~~~~~~~~~~i~~ 99 (452)
T PRK07445 20 YNSQRFYQLAQQLYLQLQQLATPRTPPKILLAESDPLQFLAAFLAAVAAGCPVFLANPHWGQQEWQQVLNLVQPDQIWGL 99 (452)
T ss_pred cChHHHHHHHHHHHHHHHHhcCCCCCCeEEEecCCCHHHHHHHHHHHHhCcEEEeeccCCCHHHHHHHHHhcCCCEEEec
Confidence 7899999999999999999998 579999999999999999999999999999999999999999999999999999987
Q ss_pred CCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCceEeeHHHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCC
Q 010568 158 EKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDP 237 (507)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~p 237 (507)
.+..... .... ........+++.++++|||||||.|
T Consensus 100 ~~~~~~~----------------~~~~----------------------------~~~~~~~~~~~~~~i~~TSGTTG~P 135 (452)
T PRK07445 100 DQLKLSH----------------PPPL----------------------------PSQGILPNLETGWIMIPTGGSSGQI 135 (452)
T ss_pred Ccccccc----------------CCCC----------------------------CccccCCCCCCcEEEEeCCCCCCCC
Confidence 6532100 0000 0000123468899999999999999
Q ss_pred ceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHHcCCEEEEecC-CHHHHHHHhhhhCCe
Q 010568 238 KGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRG-DVKLLLEDIGELKPT 316 (507)
Q Consensus 238 K~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~v~l~~~-~~~~~~~~i~~~~vt 316 (507)
|+|++||.++...+......+ ++.. ++.++.+|++|.+|+..++.++..|+++++.+. ..........+++++
T Consensus 136 KgV~~t~~~l~~~~~~~~~~~-----~~~~-~~~~~~~Pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~~~~~~t 209 (452)
T PRK07445 136 RFAIHTWETLTASVQGFQRYF-----QLQQ-VNSFCVLPLYHVSGLMQFMRSFLTGGKLVILPYKRLKSGQELPPNPSDF 209 (452)
T ss_pred cEEEechHHHHHHHHHHHHHh-----cCCC-CceEeccCchhhhhHHHHHHHHHcCCeEEEcChHhccchhhhhhhcCce
Confidence 999999999988877755433 3443 467889999999999888889999999998864 223223344578899
Q ss_pred EEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhHHhhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCC
Q 010568 317 IFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAP 396 (507)
Q Consensus 317 ~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~ 396 (507)
+++++|.+++.+++... .++ +++|.+++||++
T Consensus 210 ~~~~vP~~l~~l~~~~~----------------------------------------~~l--------~~l~~i~~gG~~ 241 (452)
T PRK07445 210 FLSLVPTQLQRLLQLRP----------------------------------------QWL--------AQFRTILLGGAP 241 (452)
T ss_pred EEEehHHHHHHHHhhCh----------------------------------------hhh--------hcceEEEECCcc
Confidence 99999999998764100 001 379999999999
Q ss_pred CCHHHHHHHHHhhCCcEEeecccccCccceeccCCCC-CccCCcccccccCceEEEeecCCCccccCCCCCCceEEEecC
Q 010568 397 LTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNE-MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGS 475 (507)
Q Consensus 397 l~~~l~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~-~~~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~ 475 (507)
+++++.+.+++ +++++++.||+||++..+....+.. ....+++|+|+||++++|++ |+.|||+|+|+
T Consensus 242 l~~~~~~~~~~-~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~p~~~v~i~~-----------g~~Gel~v~g~ 309 (452)
T PRK07445 242 AWPSLLEQARQ-LQLRLAPTYGMTETASQIATLKPDDFLAGNNSSGQVLPHAQITIPA-----------NQTGNITIQAQ 309 (452)
T ss_pred CCHHHHHHHHh-cCCeEecCcchhhhcccccccCchhhccCCCcCCccCCCCeEEEcC-----------CCcceEEEeCC
Confidence 99999988876 4899999999999986554433332 22347899999999999872 36899999999
Q ss_pred CccccccCChhhhhhhcccCceeec-cEEEecC
Q 010568 476 TVFSGYYKREDLTKEVMVDGWFHTG-MGVWEQL 507 (507)
Q Consensus 476 ~v~~gY~~~~~~~~~~~~dgw~~TG-lg~~d~d 507 (507)
.++.||++++.. .+|||+|| +|++|+|
T Consensus 310 ~~~~gY~~~~~~-----~~g~~~TGDl~~~d~d 337 (452)
T PRK07445 310 SLALGYYPQILD-----SQGIFETDDLGYLDAQ 337 (452)
T ss_pred ccchhhcCCccC-----CCCEEECCCEEEEcCC
Confidence 999999986431 47999999 9999876
|
|
| >KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-43 Score=350.38 Aligned_cols=399 Identities=20% Similarity=0.267 Sum_probs=316.0
Q ss_pred CCCCHH-HHHHHHHHhC-CCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHH
Q 010568 42 GMESCW-DVFRMAVERN-PNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIG 119 (507)
Q Consensus 42 ~~~tl~-~~l~~~~~~~-pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~ 119 (507)
.+.+.. ..+.++.+.. +|.+++++. +...+....+||.|+.+++.++|+.|++.|+++||+|++++|+.++++++
T Consensus 61 ~~ln~~~n~~~~~~~~~~~~~~a~~~~---~~~~~~~~~~t~~el~~~v~~~a~~l~~~g~~kGD~V~~~mPm~~e~~ia 137 (626)
T KOG1175|consen 61 AFLNACYNCLDRHIKEKGGDKVAIIFE---GNEGGDTEVWTYKELLDQVVRLANVLRKCGLKKGDTVAIYMPMIPEAVIA 137 (626)
T ss_pred chhhhhHhhhhhhhhhcCCCCcEEEEE---ecCCCceEEEEHHHHHHHHHHHHHHHHhcCCCCCcEEEEeccCChHHHHH
Confidence 334444 4455555544 899999987 44444445599999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhH---------H---hhcCCCCC-CCccEEEEecCCCh
Q 010568 120 MEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPE---------M---LKTFPKTT-EHLKTIVSFSKVKP 186 (507)
Q Consensus 120 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~---------~---~~~~~~~~-~~~~~v~~~~~~~~ 186 (507)
++||.++|++.+++-..++++++...++.++++++|+.+..... . +....... +....+++....
T Consensus 138 ~lA~~r~Gai~~~v~~~fs~~~l~~Rl~~~~~k~i~t~d~~~~~~k~i~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-- 215 (626)
T KOG1175|consen 138 MLACARIGAIHSSVFAGFSAKELLDRLQDSKAKVIITQDVVARGGKSINLKCIVLEALLLVSDKSRPVWLDLIVSRRN-- 215 (626)
T ss_pred HHHHhhcCeEEEEeeccCCHHHHHHHHHhcCCCEEEEEeeeccCCCccchhhhHHHHhhcccccccccceeeEEeccc--
Confidence 99999999999999999999999999999999999998743211 1 11111110 111111111111
Q ss_pred hhHHHHhhcCceEeeHHHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHH-HHHHHhhhhhhhhhccccC
Q 010568 187 EQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNEN-IVTFIAGVKCLLESVNEKL 265 (507)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~-l~~~~~~~~~~~~~~~~~~ 265 (507)
....|++++..... ..+....+.+++.+|+|||||||.||++.+++.. ++..+.. ....+++
T Consensus 216 -----------~d~~~~~~~~~a~~-~~~~~~~~~edpl~IlfTSGtTg~PK~v~ht~~g~ll~~~~~-----~~~~~d~ 278 (626)
T KOG1175|consen 216 -----------RDLFWSLELKKASP-EHPCVPVKAEDPLFILFTSGTTGKPKGVIHTTGGYLLGAALT-----SRYHFDL 278 (626)
T ss_pred -----------ccccHHHHhhhcCC-CCCceecCccCceEEEecCCCCCCCCceeeccCcchHHHhhh-----cceeccC
Confidence 13456666554432 3346677899999999999999999999988776 5555555 4445589
Q ss_pred CCCcEEEEecChHHHHHHHH-HHHHHHcCCEEEEecC---CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccch
Q 010568 266 TSEDVYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG---DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGL 341 (507)
Q Consensus 266 ~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~v~l~~~---~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~ 341 (507)
++.|++.+.....|+.+.++ .+.+|++|+++++++. ++..+++.+.++++|+++..|+.++.+.+...+.....+
T Consensus 279 q~~dv~~~~~d~GWi~g~~~~~~gpl~~Ga~~vl~~g~p~~~~~~~~~v~k~~it~l~t~pt~~r~l~~~~~~~~~~~~- 357 (626)
T KOG1175|consen 279 QPSDVLWCASDLGWITGHSYVLYGPLLNGATVVLYEGPPFDPGRIWKILDKYKVTVLYTAPTAYRLLRRLGQEDVTSYS- 357 (626)
T ss_pred CCcceEEEecccCeeeccchhhhhhhhcCcEEEEEcCCCCChhhhhhhHhhcceEEEEeccHHHHHHHHhccccccccc-
Confidence 99999999999999999887 6779999999999875 889999999999999999999999987553222211110
Q ss_pred hHHHHHHHHHHhHHhhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhCC-cEEeecccc
Q 010568 342 LKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACA-HVLQGYGLT 420 (507)
Q Consensus 342 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~~-~v~~~YG~t 420 (507)
+ ++||++.++||+++++...++.+.++. +|++.||+|
T Consensus 358 ----------------------------------~--------~sLk~~~S~Gepi~~~~~ew~~~~~~~~pv~e~~~qt 395 (626)
T KOG1175|consen 358 ----------------------------------L--------KSLRTCGSVGEPINPEAWEWWKRVTGLDPIYETYGQT 395 (626)
T ss_pred ----------------------------------c--------ceEEEEeecCccCCcchHHHHHHhcCccchhhceeee
Confidence 0 279999999999999999999999987 699999999
Q ss_pred cCccceeccCCCC-CccCCcccccccCceEEEeecCCCccccCCCCCCceEEEec--C-CccccccCChhhhhhhc-c--
Q 010568 421 ETCAGTFVSLPNE-MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKG--S-TVFSGYYKREDLTKEVM-V-- 493 (507)
Q Consensus 421 E~~~~~~~~~~~~-~~~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g--~-~v~~gY~~~~~~~~~~~-~-- 493 (507)
|+|+.++...+.. ..++++.|.|.+|+.+.|+| ++|+..+... +.|+|+++. | +.+++||+|++....+. .
T Consensus 396 EtG~~~i~~~~g~~p~~pg~~~~p~~g~~v~i~d-e~g~~~~~~~-~~G~l~~~~~~P~~~~r~~~~n~erf~~~yf~k~ 473 (626)
T KOG1175|consen 396 ETGGICITPKPGKLPIKPGSAGKPFPGYDVQILD-ENGNELPPST-GNGELRLKPPWPPGMFRTLWGNHERFRAAYFKKF 473 (626)
T ss_pred ccCceeeeccCCCCCcCccccCCCCCCcceEEEC-CCCCCcCCCC-ceeEEEEeCCCCccccccccCCHHHhhhhhcccC
Confidence 9999999988888 67789999999999999999 8888776644 899999998 3 77999999999544444 3
Q ss_pred cCceeec-cEEEecC
Q 010568 494 DGWFHTG-MGVWEQL 507 (507)
Q Consensus 494 dgw~~TG-lg~~d~d 507 (507)
.|+|.|| .+++|+|
T Consensus 474 pg~y~tGD~~~rd~d 488 (626)
T KOG1175|consen 474 PGYYFTGDGGRRDED 488 (626)
T ss_pred CceEEecCceEEcCC
Confidence 7899999 9999986
|
|
| >PLN03051 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-42 Score=356.57 Aligned_cols=341 Identities=16% Similarity=0.140 Sum_probs=246.2
Q ss_pred eCCchhhHHHHHHHHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCC------hhHHhhcCCCCCCCccEEEEecC
Q 010568 110 GVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKK------IPEMLKTFPKTTEHLKTIVSFSK 183 (507)
Q Consensus 110 ~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~------~~~~~~~~~~~~~~~~~v~~~~~ 183 (507)
++|++++++++|||+++|++++|+++.++.+++.++++.++++++|+++.. ...+.+.... .....++....
T Consensus 1 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~el~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~ 78 (499)
T PLN03051 1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPLYSKVVEA--APAKAIVLPAA 78 (499)
T ss_pred CCCcHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEecCceeeCCeeecchhhhhhc--ccceEEEEecc
Confidence 589999999999999999999999999999999999999999999998642 1111111111 11222222211
Q ss_pred CChhhHHHHhhcCceEeeHHHHHhcccc------CCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhh
Q 010568 184 VKPEQREEIEKYGLAVYSWDEFLQLGEN------KQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCL 257 (507)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~ 257 (507)
..... . ........|++++..... .........++++++|+|||||||.||+|++||.+++........
T Consensus 79 ~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~- 153 (499)
T PLN03051 79 GEPVA---V-PLREQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVESVTNILFSSGTTGEPKAIPWTHLSPLRCASDGWA- 153 (499)
T ss_pred CcccC---C-ccccCcccHHHHHhhhccccccccccCCcccCCccceEEEEeCCCCCCCCceEEEccchHHHHHHHHHH-
Confidence 10000 0 000012356666532111 011111235689999999999999999999999998776554322
Q ss_pred hhhccccCCCCcEEEEecChHHHHHHHHHHHHHHcCCEEEEecC--CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHh
Q 010568 258 LESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRG--DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQK 335 (507)
Q Consensus 258 ~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~v~l~~~--~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~ 335 (507)
..++..+|++++.+|++|.+++..++.+++.|+++++.+. ++..+++.|+++++|+++++|+++..|++.....
T Consensus 154 ----~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~i~~~~vt~~~~vP~~~~~l~~~~~~~ 229 (499)
T PLN03051 154 ----HMDIQPGDVVCWPTNLGWMMGPWLLYSAFLNGATLALYGGAPLGRGFGKFVQDAGVTVLGLVPSIVKAWRHTGAFA 229 (499)
T ss_pred ----hcCCCCCCEEEEccCcceeeehHHHHHHHHcCCEEEecCCCCCcHHHHHHHHHhCCcEEEeCHHHHHHHHhcCccc
Confidence 2367889999999999999998777888999999998863 7889999999999999999999999875421000
Q ss_pred hhccchhHHHHHHHHHHhHHhhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhh--CCcE
Q 010568 336 ISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA--CAHV 413 (507)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~--~~~v 413 (507)
....++ ++||.+++||+++++++.+++++.+ +..+
T Consensus 230 -----------------------------------~~~~~~--------~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~ 266 (499)
T PLN03051 230 -----------------------------------MEGLDW--------SKLRVFASTGEASAVDDVLWLSSVRGYYKPV 266 (499)
T ss_pred -----------------------------------cccCCc--------hhheEEEecCCCCCHHHHHHHHHhcccccee
Confidence 000111 2799999999999999988877633 4789
Q ss_pred EeecccccCccceeccCCCCCccCCcccccccCceEEEeecCCCccccCCCCCCceEEEecCCc--cccccCChhhhhhh
Q 010568 414 LQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTV--FSGYYKREDLTKEV 491 (507)
Q Consensus 414 ~~~YG~tE~~~~~~~~~~~~~~~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v--~~gY~~~~~~~~~~ 491 (507)
++.||+||++..++..........+++|+|.+|++++|+| ++++.++.+.++.|||+|+||.+ +.|||+++ .+ +.
T Consensus 267 ~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~ivd-~~g~~~~~g~~~~Gel~v~g~~~~~~~gy~~~~-~~-~~ 343 (499)
T PLN03051 267 IEYCGGTELASGYISSTLLQPQAPGAFSTASLGTRFVLLN-DNGVPYPDDQPCVGEVALAPPMLGASDRLLNAD-HD-KV 343 (499)
T ss_pred EeeeccccccceeecccccCCCCCccccCCCCCceEEEEC-CCCCCCCCCCCcceEEEEecCcCCCCccccCCc-cc-ce
Confidence 9999999987544433222223357999999999999999 88887766544689999999976 58999865 33 34
Q ss_pred cccC----------ceeec-cEEEecC
Q 010568 492 MVDG----------WFHTG-MGVWEQL 507 (507)
Q Consensus 492 ~~dg----------w~~TG-lg~~d~d 507 (507)
+.+| ||+|| +|++|+|
T Consensus 344 ~~~g~~~~~~~~~~~~~TGDlg~~d~d 370 (499)
T PLN03051 344 YYKGMPMYGSKGMPLRRHGDIMKRTPG 370 (499)
T ss_pred eeecCCccccCCcceeecCCeEEECCC
Confidence 4444 68999 9999986
|
|
| >PRK07868 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=376.15 Aligned_cols=385 Identities=15% Similarity=0.140 Sum_probs=274.2
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHH
Q 010568 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120 (507)
Q Consensus 41 ~~~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~ 120 (507)
....|+.++|++.++++||++|+++. + +.+||+||.++++++|+.|+++|+++||+|+|+++|++++++++
T Consensus 444 ~~~~sl~~ll~~~a~~~pd~~Al~~~---~------~~lTY~eL~~ra~rlA~~L~~~Gv~~Gd~VaI~~~n~~e~v~a~ 514 (994)
T PRK07868 444 HTRISLGRIIAEQARDAPKGEFLLFD---G------RVHTYEAVNRRINNVVRGLIAVGVRQGDRVGVLMETRPSALVAI 514 (994)
T ss_pred CCCccHHHHHHHHHHHCCCCeEEEeC---C------ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence 45568999999999999999999864 2 46999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCceEe
Q 010568 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVY 200 (507)
Q Consensus 121 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 200 (507)
+||+++|++++|++|. +++.++++.++++++|++.+....+... ...+++++.......... ......
T Consensus 515 lA~~~aGav~vpl~p~---~~l~~il~~s~~~~li~~~~~~~~~~~~-------~~~iiv~~~~~~~~~~~~--~~~~~~ 582 (994)
T PRK07868 515 AALSRLGAVAVLMPPD---TDLAAAVRLGGVTEIITDPTNLEAARQL-------PGRVLVLGGGESRDLDLP--DDADVI 582 (994)
T ss_pred HHHHhcCCEEEEeCCc---hhHHHHHhccCCeEEEEChHHHHHHHhc-------CceEEEecCCccccccCC--cchhhh
Confidence 9999999999999984 6899999999999999987665544321 124455442110000000 000001
Q ss_pred eHHHHHhccccCC--CCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChH
Q 010568 201 SWDEFLQLGENKQ--FDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLA 278 (507)
Q Consensus 201 ~~~~l~~~~~~~~--~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~ 278 (507)
.++++.......+ .......++++++|+|| ||||.||++.++|.+......... ....+..+|++++.+|++
T Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~dd~a~IiyT-gStgtpKpk~vt~~~~~~~~~~~~-----~~~~l~~~d~~L~~~Pl~ 656 (994)
T PRK07868 583 DMEKIDPDAVELPGWYRPNPGLARDLAFIAFS-TAGGELVAKQITNYRWALSAFGTA-----SAAALDRRDTVYCLTPLH 656 (994)
T ss_pred hhhhcCcccccCCcccCCCCCCCCccEEEEEe-CCCCCcCcEEEehHHHHHHHHhhh-----hhcCCCCCCeEEEecChH
Confidence 1111111000000 00112236889999999 577777777778877654443322 233678899999999999
Q ss_pred HHHHHHHHH-HHHHcCCEEEEecC-CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhHHh
Q 010568 279 HIFDRAIEE-VFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFH 356 (507)
Q Consensus 279 h~~g~~~~~-~~l~~G~~v~l~~~-~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (507)
|.+++...+ .++..|+++++.+. +++.+++.|+++++|+++++|++++.+++....
T Consensus 657 h~~gl~~~l~~~l~gG~~vvl~~~~~~~~~~~~I~~~~vT~~~~~Ps~l~~L~~~~~~---------------------- 714 (994)
T PRK07868 657 HESGLLVSLGGAVVGGSRIALSRGLDPDRFVQEVRQYGVTVVSYTWAMLREVVDDPAF---------------------- 714 (994)
T ss_pred HHhHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCC----------------------
Confidence 999998755 44666666666655 999999999999999999999999988652000
Q ss_pred hhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhC-CcEEeecccccCccceeccCCCCCc
Q 010568 357 NLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVAC-AHVLQGYGLTETCAGTFVSLPNEMS 435 (507)
Q Consensus 357 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~-~~v~~~YG~tE~~~~~~~~~~~~~~ 435 (507)
... ..+++|.++. +.+++++.+.+.+.++ +++++.||+||++.... ... ..
T Consensus 715 ---------------~~~--------~~~slr~~~g--~gl~~~l~~~~~~~~~~~~l~~~YG~TE~~~~~~-~~~--~~ 766 (994)
T PRK07868 715 ---------------VLH--------GNHPVRLFIG--SGMPTGLWERVVEAFAPAHVVEFFATTDGQAVLA-NVS--GA 766 (994)
T ss_pred ---------------ccC--------CCCceEEEec--CCCCHHHHHHHHHHhCchheeeeeeccccccccc-ccC--CC
Confidence 000 0137887763 3499999999999886 88999999999875443 221 23
Q ss_pred cCCcccccccCc-eEEEeec----------CCCccccCCCCCCceEEEecCCccccccCChhhhh--hhc--ccCceeec
Q 010568 436 MIGTVGPPVPNV-DVCLESV----------PEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTK--EVM--VDGWFHTG 500 (507)
Q Consensus 436 ~~~s~G~p~pg~-~i~ivd~----------~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~--~~~--~dgw~~TG 500 (507)
.++++|+|+||+ +++|.+. ++|....++.|+.|||+++|+.. + +|+.+. ..| .||||+||
T Consensus 767 ~~~svG~p~pg~~~v~i~~~d~~~g~li~d~~G~~~~~~~ge~Gel~~~~~~~----~-~p~~t~~~~~~~~~dgw~~TG 841 (994)
T PRK07868 767 KIGSKGRPLPGAGRVELAAYDPEHDLILEDDRGFVRRAEVNEVGVLLARARGP----I-DPTASVKRGVFAPADTWISTE 841 (994)
T ss_pred CCcccCCccCCCCceeEEEecCcCCceeecCCceEEEcCCCCceEEEEecCCC----C-ChhhhhHhcccccCCEEEecc
Confidence 448999999998 6776421 33321334567999999999863 3 344332 234 37999999
Q ss_pred -cEEEecC
Q 010568 501 -MGVWEQL 507 (507)
Q Consensus 501 -lg~~d~d 507 (507)
+|++|+|
T Consensus 842 Dlg~~d~d 849 (994)
T PRK07868 842 YLFRRDDD 849 (994)
T ss_pred ceEEEcCC
Confidence 9999986
|
|
| >KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=319.05 Aligned_cols=394 Identities=18% Similarity=0.169 Sum_probs=298.8
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHH
Q 010568 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120 (507)
Q Consensus 41 ~~~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~ 120 (507)
-...|+.++|..+++++||++|+++. +.. +++||+|+.++++++|+.|+..|++.||.|+++|+|.++++.+-
T Consensus 74 r~~~ti~~~F~~~vrr~p~k~aii~~---~~~----~~~Tf~e~~~~s~~~A~~~~~~~l~~GD~VAL~men~pefv~lW 146 (649)
T KOG1179|consen 74 RERRTIAELFLSQVRRQPDKPAIIYE---GPF----QSLTFAELDARSNRVANYLHAEGLKAGDVVALLMENRPEFVALW 146 (649)
T ss_pred ccCCcHHHHHHHHHHhCCCccEEEEe---CCC----ceeeHHHHHHHHHHHHHHHHHhhcccCCEEEEecCCChhHHHHH
Confidence 45589999999999999999999987 432 57999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCceEe
Q 010568 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVY 200 (507)
Q Consensus 121 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 200 (507)
|+++++|++...||++.-.+.+.+-++.++++.+|++.+..+.+.+.........-.++..+...... ...
T Consensus 147 lGLaKlGv~tA~iNtNlR~~~LlHsi~~s~aralv~~~el~~~~~e~~~~l~~~~i~~~~~~~~~~~~---------g~~ 217 (649)
T KOG1179|consen 147 LGLAKLGVITAFINTNLRGEPLLHSITVSGARALVVGPELLNALEEILPLLIKNGIHVFSLGPTSVPD---------GIE 217 (649)
T ss_pred HhHHhhCceeeeeccccccchhhhhhhhcCceEEEECHHHHHHHHhcchhhhhccceEEecCCCCCCc---------hHH
Confidence 99999999999999999999999999999999999999988777776433222212233332211100 111
Q ss_pred eHHHHHhccccCCCC---CCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecCh
Q 010568 201 SWDEFLQLGENKQFD---LPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPL 277 (507)
Q Consensus 201 ~~~~l~~~~~~~~~~---~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl 277 (507)
++...+......+.+ .......++++.+|||||||.||+.+++|.........+...+ +++++|+++..+|+
T Consensus 218 ~L~~~l~~~~~~~vp~~~~~~~~~~s~~lyIYTSGTTGLPKaAvith~r~~~~a~g~~~~~-----g~~~~DvvY~~lPL 292 (649)
T KOG1179|consen 218 SLLAKLSAAPKHPVPVSTRSGLTFRSPLLYIYTSGTTGLPKAAVITHLRYLQGAAGFYYVF-----GMTADDVVYTTLPL 292 (649)
T ss_pred HHHHhhcccccCCCCcccCCCccccceeEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHh-----CCCccceEEEcchh
Confidence 222223322222222 2234568899999999999999999999999887777654444 89999999999999
Q ss_pred HHHHHHHH-HHHHHHcCCEEEEecC-CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhHH
Q 010568 278 AHIFDRAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKF 355 (507)
Q Consensus 278 ~h~~g~~~-~~~~l~~G~~v~l~~~-~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (507)
+|..+.+. +..++..|+++|+-.+ ++.++|+...+|++|++-..-.+.+.|+.+-....
T Consensus 293 YHsaa~ilGi~~~l~~GaT~VlrkKFSAS~FW~DC~k~~~Tv~QYIGElcRYLl~~p~~~~------------------- 353 (649)
T KOG1179|consen 293 YHSAAGILGIGGCLLHGATVVLRKKFSASNFWDDCRKYNVTVIQYIGELCRYLLNQPPSPE------------------- 353 (649)
T ss_pred HHHHHHHHHHHHHHhcCceEEEecccchhhhHHHHHHhCCeeeehHHHHHHHHHcCCCChh-------------------
Confidence 99999877 7788999999999876 99999999999999999998888888765211110
Q ss_pred hhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhCC-cEEeecccccCccceeccCCCCC
Q 010568 356 HNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACA-HVLQGYGLTETCAGTFVSLPNEM 434 (507)
Q Consensus 356 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~~-~v~~~YG~tE~~~~~~~~~~~~~ 434 (507)
...+++|.++..| +-++.++.|.++||. ++.+.||+||.....+... ..
T Consensus 354 --------------------------er~HkVRla~GNG--LR~diW~~Fv~RFg~~~IgE~YgaTEgn~~~~N~d-~~- 403 (649)
T KOG1179|consen 354 --------------------------ERQHKVRLAYGNG--LRPDIWQQFVKRFGIIKIGEFYGATEGNSNLVNYD-GR- 403 (649)
T ss_pred --------------------------hcCceEEEEecCC--CCchHHHHHHHHcCCCeEEEEeccccCcceeeeec-Cc-
Confidence 0115788877555 899999999999986 5999999999876554432 11
Q ss_pred ccCCccccc-------ccCceEE--------EeecCCCccccCCCCCCceEEEe--cCCc---cccccCChhhhhhhc-c
Q 010568 435 SMIGTVGPP-------VPNVDVC--------LESVPEMEYDALSSTPRGEVCVK--GSTV---FSGYYKREDLTKEVM-V 493 (507)
Q Consensus 435 ~~~~s~G~p-------~pg~~i~--------ivd~~~~~~~~~~~g~~Gel~v~--g~~v---~~gY~~~~~~~~~~~-~ 493 (507)
.|.+|+. .|---|| |.| ++|-..++++||+|.+.-+ -..- |.||.++.+.+++.. +
T Consensus 404 --vGA~G~~~~~~~~l~p~~LIk~D~~t~E~iRd-~~G~Ci~~~~GEpGlLv~~i~~k~P~~~F~GY~g~~~~t~kKl~r 480 (649)
T KOG1179|consen 404 --VGACGFMSRLLKLLYPFRLIKVDPETGEPIRD-SQGLCIPCPPGEPGLLVGKIVQKNPLRSFLGYAGPKKATEKKLLR 480 (649)
T ss_pred --cccccchhhhhhhccceEEEEecCCCCceeec-CCceEEECCCCCCceEEEEeccCCchhhhccccCchhhhhhhhHH
Confidence 1333331 1211122 344 5566678888999966543 2223 899999888887665 2
Q ss_pred ------cCceeec-cEEEecC
Q 010568 494 ------DGWFHTG-MGVWEQL 507 (507)
Q Consensus 494 ------dgw~~TG-lg~~d~d 507 (507)
|-||.|| +-.+|+.
T Consensus 481 DVFkkGD~~f~tGDlLv~D~~ 501 (649)
T KOG1179|consen 481 DVFKKGDVYFNTGDLLVADEL 501 (649)
T ss_pred hhhccCcEEEeeCcEEEEecC
Confidence 4499999 9888873
|
|
| >PRK08308 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=322.48 Aligned_cols=295 Identities=17% Similarity=0.130 Sum_probs=247.3
Q ss_pred EEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHHHHHHhcCCEEeeccCCCChHHHHHHHhhcCccEEEe
Q 010568 77 VWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFV 156 (507)
Q Consensus 77 ~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~ 156 (507)
+++||.||.++++++|+.|. .|+++|++|+++++|+++++++++||+++|++++|+++..+.+++..+++.++++.+++
T Consensus 7 ~~~ty~el~~~~~~~a~~l~-~~~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~i~ 85 (414)
T PRK08308 7 EEYSKSDFDLRLQRYEEMEQ-FQEAAGNRFAVCLKDPFDIITLVFFLKEKGASVLPIHPDTPKEAAIRMAKRAGCHGLLY 85 (414)
T ss_pred ceecHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHHCCeEEEecCCCCCHHHHHHHHHhCCCCEEEe
Confidence 47999999999999999985 68999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCceEeeHHHHHhccccCCCCCCCCCCCCeEEEEeccCCCCC
Q 010568 157 EEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGD 236 (507)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~ 236 (507)
++.... . . ......++++++++|||||||.
T Consensus 86 ~~~~~~---------------~---~--------------------------------~~~~~~~~~~~~i~~TSGtTG~ 115 (414)
T PRK08308 86 GESDFT---------------K---L--------------------------------EAVNYLAEEPSLLQYSSGTTGE 115 (414)
T ss_pred cCcccc---------------c---c--------------------------------cCCCCCCCCceEEEECCCCCCC
Confidence 753100 0 0 0012246789999999999999
Q ss_pred CceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHH-HHHHHHcCCEEEEecC-CHHHHHHHhhhhC
Q 010568 237 PKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELK 314 (507)
Q Consensus 237 pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~v~l~~~-~~~~~~~~i~~~~ 314 (507)
||+|.++|.++..++..+...+ ....+|+.+..+|++|.+++.. ++.++..|+++++.+. ++..+++.+++++
T Consensus 116 PKgv~~s~~~l~~~~~~~~~~~-----~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~ 190 (414)
T PRK08308 116 PKLIRRSWTEIDREIEAYNEAL-----NCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIITNKNPKFALNILRNTP 190 (414)
T ss_pred CcEEEEehHhHHHHHHHHHHhh-----CCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecCCCCHHHHHHHHHHhC
Confidence 9999999999998888755444 6778899999999999999865 7788999999998876 9999999999999
Q ss_pred CeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhHHhhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcC
Q 010568 315 PTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGA 394 (507)
Q Consensus 315 vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G 394 (507)
+|+++++|.++..+.+.... ..+++.++++|
T Consensus 191 ~t~~~~~P~~~~~l~~~~~~-------------------------------------------------~~~l~~~~~~G 221 (414)
T PRK08308 191 QHILYAVPLMLHILGRLLPG-------------------------------------------------TFQFHAVMTSG 221 (414)
T ss_pred CeEEEcCHHHHHHHHhcCCc-------------------------------------------------cccccEEEEcc
Confidence 99999999999987542100 02578899999
Q ss_pred CCCCHHHHHHHHHhhCCcEEeecccccCccceeccCCCCCccCCcccccccCceEEEeecCCCccccCCCCCCceEEEec
Q 010568 395 APLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKG 474 (507)
Q Consensus 395 ~~l~~~l~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g 474 (507)
+++++++.+.+++. +.++++.||+||++.+..... ...++++|+|+|++++++.+ + .++.|||++++
T Consensus 222 ~~l~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~---~~~~~~~G~p~~~~~~~~~~-~--------~~~~gel~v~~ 288 (414)
T PRK08308 222 TPLPEAWFYKLRER-TTYMMQQYGCSEAGCVSICPD---MKSHLDLGNPLPHVSVSAGS-D--------ENAPEEIVVKM 288 (414)
T ss_pred CCCCHHHHHHHHHh-CChhhhccCccccCCeeecCC---CCCCCccCccCCCeEEEEec-C--------CCCCceEEEEc
Confidence 99999999999886 578999999999986443221 22347899999999999876 3 23679999985
Q ss_pred CCccccccCChhhhhhhcccCceeec-cEEEecC
Q 010568 475 STVFSGYYKREDLTKEVMVDGWFHTG-MGVWEQL 507 (507)
Q Consensus 475 ~~v~~gY~~~~~~~~~~~~dgw~~TG-lg~~d~d 507 (507)
. ++||+|| +|++|+|
T Consensus 289 ~------------------~~~~~TGDl~~~~~d 304 (414)
T PRK08308 289 G------------------DKEIFTKDLGYKSER 304 (414)
T ss_pred C------------------CceEECCceEEECCC
Confidence 2 5799999 9999875
|
|
| >COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=300.85 Aligned_cols=383 Identities=20% Similarity=0.207 Sum_probs=302.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCch
Q 010568 35 GFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCP 114 (507)
Q Consensus 35 ~~~~~~~~~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~ 114 (507)
......+...++.+.|.+.+...|++.|++.. + ..+||+|+..+++++|+.|++.|+.++++|+++++.++
T Consensus 218 ~~~~~~~~~~~i~~~f~~~a~~~p~~~a~~~~---~------~~lty~el~~~a~~la~~l~~~g~~~~~~V~i~~~rs~ 288 (642)
T COG1020 218 ALAAPIPLRLTIHLLFEEQAATTPDAVALVRG---G------QQLTYAELDARANRLARLLISLGVGPGETVAILADRSL 288 (642)
T ss_pred ccccCCCccchHHHHHHHHHHhCCCceeEecC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCH
Confidence 34444455588999999999999999888853 2 46999999999999999999999999999999998899
Q ss_pred hhHHHHHHHHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhh
Q 010568 115 EWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEK 194 (507)
Q Consensus 115 ~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 194 (507)
+.++.++|++++|+.++|++|.++.+.+..+++.++++.+++........... +. +.++.
T Consensus 289 ~~i~~~l~ilkaG~~yvP~d~~~P~~r~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~----~~~~~----------- 348 (642)
T COG1020 289 ELVVALLAVLKAGAAYVPLDPLYPAERLAYILEDSRPTLLLTQAHLRVDDVGL-----PG----LALDD----------- 348 (642)
T ss_pred HHHHHHHHHHhcCCeEecCCCCChHHHHHHHHhhcCccEEEeccccccccccC-----Cc----ccccc-----------
Confidence 99999999999999999999999999999999999999999883321110000 00 11010
Q ss_pred cCceEeeHHHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEe
Q 010568 195 YGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSY 274 (507)
Q Consensus 195 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~ 274 (507)
................+++.++++|||||||.||||..+|.++...+.+....+ .....|+++..
T Consensus 349 ----------~~~~~~~~~~~~~~~~~~~~ayiiytsgstg~Pkgv~~~h~~~~~~~~~~~~~~-----~~~~~d~~l~~ 413 (642)
T COG1020 349 ----------ALSEIPDTDPIPQALLGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARF-----GLDADDRVLAL 413 (642)
T ss_pred ----------ccccCCccCcccccCCCCCeEEEEEccCCCCCCCCceecCHHHHHHHHHHHHhc-----CCCcccEEeec
Confidence 000000000001233568999999999999999999999999999777755544 78889999999
Q ss_pred cChHHHHHHHHHHHHHHcCCEEEEecC----CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHH
Q 010568 275 LPLAHIFDRAIEEVFISNGAAIGFWRG----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIA 350 (507)
Q Consensus 275 ~pl~h~~g~~~~~~~l~~G~~v~l~~~----~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 350 (507)
.++.+......++.++..|+++++.+. ++..+.+.+.++++|++..+|.++..++.........
T Consensus 414 ~s~~fD~~~~~~f~~l~~G~~l~~~~~~~~~~~~~l~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~~------------ 481 (642)
T COG1020 414 ASLSFDASVFEIFGALLEGARLVLAPALLQVDPAALLELLEAQGITVLLLVPLLLRLLLLAALAPDLI------------ 481 (642)
T ss_pred CCcccchhHHHHHHHHhCCCEEEecCccccCCHHHHHHHHHHcCCEEEEecHHHHHHHHhchhhcccc------------
Confidence 999877778889999999999998874 8999999999999999999999999886531000000
Q ss_pred HHhHHhhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhh--CCcEEeecccccCccceec
Q 010568 351 YSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA--CAHVLQGYGLTETCAGTFV 428 (507)
Q Consensus 351 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~--~~~v~~~YG~tE~~~~~~~ 428 (507)
.....+|.+++||+.++.++...+.... ...+.+.||.||+......
T Consensus 482 -------------------------------~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~l~~~ygpTe~~~~~~~ 530 (642)
T COG1020 482 -------------------------------SPCERLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEATLDAPS 530 (642)
T ss_pred -------------------------------CCcccccEEEEcCCCCCHHHHHHHHHhccccceEeeccCccHHhhheee
Confidence 0002489999999999999998887755 4689999999996665544
Q ss_pred cCCCCCcc-CCcccccccCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhccc-Cceeec-cEEEe
Q 010568 429 SLPNEMSM-IGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVD-GWFHTG-MGVWE 505 (507)
Q Consensus 429 ~~~~~~~~-~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~d-gw~~TG-lg~~d 505 (507)
........ ...+|+|+++..++|.| +....+|.+ ..||+++.|.++..||+++|+.+..+|.. .+|+|| +++++
T Consensus 531 ~~~~~~~~~~~piG~p~~n~~~~ild-~~~~~~p~g--v~gel~i~g~~~a~gy~~~p~lt~~~f~~~~~y~tgD~~r~~ 607 (642)
T COG1020 531 FPISAELESRVPIGRPVANTQLYILD-QGLRPLPLG--VPGELYIAGLGLALGYLNRPDLTAERFIALRLYRTGDLARPL 607 (642)
T ss_pred EEcccccCCCCCcceeeCCCeEEEEC-CCCCcCCCC--CCeeeEECCcchhhhhcCChhhhHHHhhhccCccCCCeeeEC
Confidence 33222111 35899999999999999 767766665 88999999999999999999999999944 599999 99877
Q ss_pred cC
Q 010568 506 QL 507 (507)
Q Consensus 506 ~d 507 (507)
.|
T Consensus 608 ~d 609 (642)
T COG1020 608 AD 609 (642)
T ss_pred CC
Confidence 64
|
|
| >PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-26 Score=228.97 Aligned_cols=206 Identities=25% Similarity=0.347 Sum_probs=165.8
Q ss_pred CCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHHcCCEEEE
Q 010568 219 KKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGF 298 (507)
Q Consensus 219 ~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~v~l 298 (507)
..++++++++|||||||.||+|.++|.++...+...... +...++++..+|++|.+++..++.++..|+++++
T Consensus 32 ~~~~d~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~-------~~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~v~ 104 (358)
T PRK07824 32 PIDDDVALVVATSGTTGTPKGAMLTAAALTASADATHDR-------LGGPGQWLLALPAHHIAGLQVLVRSVIAGSEPVE 104 (358)
T ss_pred CCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHhc-------cCCCCeEEEECChHHHHHHHHHHHHHHcCCeEEe
Confidence 356899999999999999999999999998877764332 3355788999999999999888888999999887
Q ss_pred ec----CCHHHHHHHhhhhC--CeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhHHhhhhcCCCCCCCchhhh
Q 010568 299 WR----GDVKLLLEDIGELK--PTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIAD 372 (507)
Q Consensus 299 ~~----~~~~~~~~~i~~~~--vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 372 (507)
.. .++..+++.+++++ .++...+|..+..++..... .
T Consensus 105 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~l~~~~~~~~~------------------------------------~- 147 (358)
T PRK07824 105 LDVSAGFDPTALPRAVAELGGGRRYTSLVPMQLAKALDDPAA------------------------------------T- 147 (358)
T ss_pred cCcCCCcCHHHHHHHHHHhCCCceEEEecHHHHHHHHhCccc------------------------------------c-
Confidence 32 28999999999998 55666788877665431000 0
Q ss_pred HHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhCCcEEeecccccCccceeccCCCCCccCCcccccccCceEEEe
Q 010568 373 KIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLE 452 (507)
Q Consensus 373 ~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~s~G~p~pg~~i~iv 452 (507)
. ...+++.+++||+++++++.+.+.+ +++++++.||+||++..+ ...|.|+||++++|.
T Consensus 148 -~--------~~~~l~~i~~gG~~l~~~~~~~~~~-~~~~v~~~YG~TE~~~~~-----------~~~G~~~~g~~v~i~ 206 (358)
T PRK07824 148 -A--------ALAELDAVLVGGGPAPAPVLDAAAA-AGINVVRTYGMSETSGGC-----------VYDGVPLDGVRVRVE 206 (358)
T ss_pred -C--------CcccceEEEECCCCCCHHHHHHHHh-cCCcEEecccCCccCCCc-----------CcCceeCCCCEEEec
Confidence 0 0137999999999999999998886 489999999999987643 235899999999984
Q ss_pred ecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhc-ccCceeec-cEEEe
Q 010568 453 SVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTG-MGVWE 505 (507)
Q Consensus 453 d~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~-~dgw~~TG-lg~~d 505 (507)
| |||+++|+.++.||+++++.+ .| .+|||+|| +|+++
T Consensus 207 ~--------------Gei~v~g~~~~~gY~~~~~~~--~~~~~g~~~TGDl~~~~ 245 (358)
T PRK07824 207 D--------------GRIALGGPTLAKGYRNPVDPD--PFAEPGWFRTDDLGALD 245 (358)
T ss_pred C--------------CEEEEecCccccccCCCcccc--cccCCCceecccEEEEe
Confidence 4 999999999999999988743 34 68899999 99984
|
|
| >TIGR03089 conserved hypothetical protein TIGR03089 | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.9e-25 Score=202.88 Aligned_cols=221 Identities=11% Similarity=0.045 Sum_probs=162.3
Q ss_pred HHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHH-CCCCCCCEEEEEeCCchhhHHHHHHHHhcCC
Q 010568 50 FRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRT-CGVEERGKCGIYGVNCPEWIIGMEACNALGL 128 (507)
Q Consensus 50 l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~-~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~ 128 (507)
|...++++|+++|+++. ++..+.-+++||+||.++++++|+.|++ .|+++||+|+|+++|+++++++++||+++|+
T Consensus 2 ~~~~~~~~p~~~al~~~---~~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~Gv~~GdrV~i~~~n~~~~~~~~~a~~~~G~ 78 (227)
T TIGR03089 2 LSPLLAADPASPRLTFY---DDATGERVELSAATLANWVAKTANLLQDELDAEPGSRVALDLPAHWQTAVWLLAAWSTGV 78 (227)
T ss_pred hhhhhhhCCCCcEEEEE---cCCCCeeEEEEHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCC
Confidence 56778889999999864 3322122579999999999999999998 7999999999999999999999999999999
Q ss_pred EEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecC--CChhhHHHHhhcCceEeeHHHHH
Q 010568 129 HCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSK--VKPEQREEIEKYGLAVYSWDEFL 206 (507)
Q Consensus 129 ~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~l~ 206 (507)
+++|++ .++++++|++.+...... . + +.++.+.. ....... .......+|.+.+
T Consensus 79 v~vp~n-------------~s~a~~~v~~~~~~~~~~-~-----~--~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 134 (227)
T TIGR03089 79 EVVLAG-------------DPDADVVVTGPDRLAAAA-G-----S--GEVVALSLDPLGRRVAG---ELPPGVIDFAPEV 134 (227)
T ss_pred EEEeCC-------------CCCCCEEEeCcchhhhcc-c-----C--CceEEEeccccccCCCC---CCCCcccchhhhh
Confidence 999996 678999999887655532 1 1 12232211 0000000 0001123566655
Q ss_pred hccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHH-
Q 010568 207 QLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAI- 285 (507)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~- 285 (507)
........+.+...++|+++++||||+ +|.+++.+. . ..+++++|+++ .+|++|++|+..
T Consensus 135 ~~~~~~~~~~~~~~~~D~a~l~yTsg~---------~~~~~~~~~----~-----~~~l~~~D~~l-~~Pl~H~~gl~~~ 195 (227)
T TIGR03089 135 RVHGDQFAPYEPPDATAPALVAGGGEW---------TGAELVAAA----R-----AAGLPPGDRVL-VLAWTDLEDFLAT 195 (227)
T ss_pred hccCCCCCCCCCCCCCcceeeeccccc---------cHHHHHHHH----h-----hcCCCCCCeEE-ecCCCchHHHHHH
Confidence 432222211213466899999999985 566655544 1 22678899999 999999999965
Q ss_pred HHHHHHcCCEEEEecC-CHHHHHHHhhhhCCe
Q 010568 286 EEVFISNGAAIGFWRG-DVKLLLEDIGELKPT 316 (507)
Q Consensus 286 ~~~~l~~G~~v~l~~~-~~~~~~~~i~~~~vt 316 (507)
++.++..|+++++.+. ++..+++.|+++|||
T Consensus 196 ~~~~l~~G~t~v~~~rFd~~~~l~~i~~~~vT 227 (227)
T TIGR03089 196 LLAPLAAGGSLVLVTHPDPARLDQIAETERVT 227 (227)
T ss_pred HHHHhccCceEEEecCCCHHHHHHHHHhhcCC
Confidence 7888999999998876 999999999999987
|
This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501. |
| >KOG3628 consensus Predicted AMP-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.2e-24 Score=219.68 Aligned_cols=417 Identities=13% Similarity=0.120 Sum_probs=286.3
Q ss_pred CCceeecCccCCCCCCCCCCCCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHC-CCC
Q 010568 23 IGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTC-GVE 101 (507)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~-gv~ 101 (507)
++..+|+...++..... ..++.++|+++++.+||.+|+... ++.+.+-.++||++|..++.+++..|... -++
T Consensus 752 s~~~d~~~~~d~~~~~k---l~~ile~Lq~R~a~tp~~~a~~~~---n~~~~~~~~~Tw~~f~krva~i~~~l~~k~~lk 825 (1363)
T KOG3628|consen 752 SGGRDRGNIVDNDSERK---LLTILEILQWRAAKTPDHIAFTTL---NARGATKKTLTWAQFHKRVARIAEYLQDKGHLK 825 (1363)
T ss_pred cccccccccccchhhhH---HHHHHHHHHHHhhcCCCceEEEEe---ccCCcccceeEHHHHHHHHHHHHHHHHhcccCC
Confidence 34445555444333322 288999999999999999999987 88888888999999999999999999975 579
Q ss_pred CCCEEEEEeCCchhhHHHHHHHHhcCCEEeeccCCC------ChHHHHHHHhhcCccEEEecCCChhHHhhcC---CCCC
Q 010568 102 ERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTL------GAGAVEFIICHSGVSIAFVEEKKIPEMLKTF---PKTT 172 (507)
Q Consensus 102 ~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~------~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~---~~~~ 172 (507)
+||+|++++++++|++++++||+.+|.+++|+.|.. .-..+..+++..++..|+++......+...- ....
T Consensus 826 ~Gd~V~Lmy~~sie~vaa~~~Cly~GliPIpv~p~~~s~l~~~l~~~~~ii~~~kv~ailv~~~v~~lLrsr~~s~~~~~ 905 (1363)
T KOG3628|consen 826 AGDHVVLMYPPSIEFVAAIYACLYLGLIPIPVPPPHASNLIEDLPTFRMIIKVYKVAAILVDQKVLKLLRSREASAHVDQ 905 (1363)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHhcCeeeeccCCccHHhhhhhhHHHHHHHHHhhhheEEecHHHHHHHhhhhHHHHhhh
Confidence 999999999999999999999999999999998864 2346788999999999999986443222111 0111
Q ss_pred CCccEEEEecCCChhhHHHHhhcCceEeeHHHHHhcccc--CCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHH
Q 010568 173 EHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGEN--KQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTF 250 (507)
Q Consensus 173 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~ 250 (507)
..+..+++.++.... |..-...... ...+......+.+|++-+.--++|.--++.++|.++++.
T Consensus 906 s~~p~i~~~~~~~~t--------------~~k~~~~~~k~~~~~~~g~~~k~~~a~v~~~~~~dg~l~~~~msHsslla~ 971 (1363)
T KOG3628|consen 906 SAIPLILVLPKLPET--------------IRKRKKNIKKLNTPTPPGLNNKETPALVWFNVSTDGMLIGVKMSHSSLLAF 971 (1363)
T ss_pred hcchhhhcccccchh--------------hhhhhhhhhccCCCCCccccCCCceEEEEEEecCCcceeeeeccHHHHHHH
Confidence 334444444443221 1111111111 111222335688999999999999999999999999999
Q ss_pred HhhhhhhhhhccccCCCCcEEEEecChHHHHHHHH-HHHHHHcCCEEEEecC-----CHHHHHHHhhhhCCeEEecCcHH
Q 010568 251 IAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG-----DVKLLLEDIGELKPTIFCAVPRV 324 (507)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~v~l~~~-----~~~~~~~~i~~~~vt~l~~~P~~ 324 (507)
....++.. .+.+..-++...+.+.+.|+.. .+...+.|.+.++.+. ++..+++.|.++||.-++.+-..
T Consensus 972 Ck~iKe~~-----~l~~~rpl~~~~~~~sGlgf~~wcLlgVysGh~T~Li~p~~l~nnpsLll~~i~~~kvkDt~~~~~t 1046 (1363)
T KOG3628|consen 972 CKIIKETC-----QLYKSRPLLGCSSPYSGLGFNHWCLLGVYSGHPTLLISPMDLENNPSLLLQIISQYKVKDTYPTYST 1046 (1363)
T ss_pred HHHHHHHH-----ccccCCceEEEecCccchhHHHHHHHHHHcCCceeecCHHHhhcCHHHHHHHHhcccccccchhHHH
Confidence 99987766 6777777777777777777764 6777999999877764 89999999999999999999888
Q ss_pred HHHHHHHHHHhhhccchhHHHHHHHHHHhHHhhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHH
Q 010568 325 LDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETF 404 (507)
Q Consensus 325 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~ 404 (507)
+..+.+.+....+. ++...... +-..++..-+.....+...
T Consensus 1047 ln~c~~~l~t~~en-------------------------------------l~~~gnn~--s~s~vv~~~~RPr~ali~s 1087 (1363)
T KOG3628|consen 1047 LNLCQKGLETSVEN-------------------------------------LSKRGNNT--SSSIVVPAEERPRIALIAS 1087 (1363)
T ss_pred HHHHHhccccccch-------------------------------------hhhhhccc--ccceeeecCCccHHHHHHH
Confidence 88876644333211 11111000 1134445556666667766
Q ss_pred HHHhh---CC---cEEeecccccCccceeccCCCCC---------------------cc-----CCcccccccCceEEEe
Q 010568 405 LRVVA---CA---HVLQGYGLTETCAGTFVSLPNEM---------------------SM-----IGTVGPPVPNVDVCLE 452 (507)
Q Consensus 405 ~~~~~---~~---~v~~~YG~tE~~~~~~~~~~~~~---------------------~~-----~~s~G~p~pg~~i~iv 452 (507)
|.+.+ |. .+...|+.-=--.++.....+.. .. .-..|...+++++.|+
T Consensus 1088 f~klfa~igLsp~avStsys~r~Np~Ic~r~~sg~~Pt~~y~D~raLR~grV~~ve~~ap~~l~L~dSG~~~~~~~i~Iv 1167 (1363)
T KOG3628|consen 1088 FKKLFAAIGLSPRAVSTSYSSRVNPFICLRSYSGPEPTTVYLDARALREGRVRLVEVGAPHSLLLYDSGKLPVYTDIAIV 1167 (1363)
T ss_pred HHHHHHHcCCChhhhcccccccCChHhhhccccCCCCcceeechhhhhccceeeeecCCCCccccccCCcccccceeEEe
Confidence 66655 22 24444544433333332111100 00 0124778899999999
Q ss_pred ecCCCccccCCCCCCceEEEecCCccccccCChh-hhhhhc----c------cCceeec-cEEEe
Q 010568 453 SVPEMEYDALSSTPRGEVCVKGSTVFSGYYKRED-LTKEVM----V------DGWFHTG-MGVWE 505 (507)
Q Consensus 453 d~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~-~~~~~~----~------dgw~~TG-lg~~d 505 (507)
+ ++.. .++..|+.||||+.|.+-+.+|++-.+ .....| . .+|.||| +|++.
T Consensus 1168 n-PEtk-~pc~dge~GEIW~~S~hnA~~~~~~~d~~~~~~fn~rl~~g~~~~~sy~RTG~LGFl~ 1230 (1363)
T KOG3628|consen 1168 N-PETK-GPCRDGELGEIWVNSAHNASCSFTIGDELRSNHFNARLSSGDLLGKSYARTGDLGFLR 1230 (1363)
T ss_pred C-Cccc-cccccCCcceEEeccccccccccccCchhhhhhhhhhccccccccccceeeeeeeeee
Confidence 9 6544 566678999999999998888875322 222222 1 2499999 99974
|
|
| >TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-22 Score=205.76 Aligned_cols=224 Identities=17% Similarity=0.123 Sum_probs=160.9
Q ss_pred CCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHH-HHHHHHHHHHcCCEEEE
Q 010568 220 KKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIF-DRAIEEVFISNGAAIGF 298 (507)
Q Consensus 220 ~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~-g~~~~~~~l~~G~~v~l 298 (507)
..++++.+++||||||.||++.++|.++..........+ ...++..+|++++..++.+.. ++...+.++..|++++.
T Consensus 73 ~~~~~~~~~~TSGTTG~Pk~v~~t~~~~~~~~~~~~~~~--~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 150 (422)
T TIGR02155 73 PREQVVRIHASSGTTGKPTVVGYTQNDIDTWSSVVARSI--RAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVP 150 (422)
T ss_pred ChHHcEEEEECCCCCCCCeEeccCHHHHHHHHHHHHHHH--HHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEe
Confidence 456788899999999999999999999876644432211 223677889998876655322 33345567888999887
Q ss_pred ecC-CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhHHhhhhcCCCCCCCchhhhHHhHH
Q 010568 299 WRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFD 377 (507)
Q Consensus 299 ~~~-~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 377 (507)
.+. ++..+++.|++++|++++++|+++..|++.+........
T Consensus 151 ~~~~~~~~~~~~i~~~~~t~l~~~Ps~l~~L~~~~~~~~~~~~------------------------------------- 193 (422)
T TIGR02155 151 ISGGQTEKQVQLIQDFKPDIIMVTPSYMLNLLEELKRMGIDPA------------------------------------- 193 (422)
T ss_pred cCCCCHHHHHHHHHHHCCCEEEEcHHHHHHHHHHHHHcCCCcc-------------------------------------
Confidence 654 789999999999999999999999998765433211000
Q ss_pred HHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhCCcEEeecccccCccceeccCCCCCccCCcccccc--cCceEEEeecC
Q 010568 378 KVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPV--PNVDVCLESVP 455 (507)
Q Consensus 378 ~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~s~G~p~--pg~~i~ivd~~ 455 (507)
..++|.+++||+++++++.+.+++.||+++++.||+||+++......... ...|.++ +++.++|+|.+
T Consensus 194 ------~~~lr~i~~~ge~l~~~~~~~i~~~~g~~v~~~YG~tE~~~~~~~~~~~~----~~~g~~~~~~~~~~eivd~~ 263 (422)
T TIGR02155 194 ------QTSLQVGIFGAEPWTNAMRKEIEARLGMKATDIYGLSEVIGPGVAMECVE----TQDGLHIWEDHFYPEIIDPH 263 (422)
T ss_pred ------cCceEEEEEeCCcCCHHHHHHHHHHhCCceEecccchhhcCCceeecccc----cCCCceEecCeeEEEEECCC
Confidence 02799999999999999999999999999999999999853211111100 1123343 35677899822
Q ss_pred CCccccCCCCCCceEEEecCCccccccCChhhhhhhcccCceeec-cEEEec
Q 010568 456 EMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG-MGVWEQ 506 (507)
Q Consensus 456 ~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~dgw~~TG-lg~~d~ 506 (507)
++.. ++.|+.|||++++. +...|..+||+|| ++++|+
T Consensus 264 ~g~~--v~~Ge~Gelvvt~~------------~~~~~p~~ry~TGDl~~~~~ 301 (422)
T TIGR02155 264 TGEV--LPDGEEGELVFTTL------------TKEALPVIRYRTRDLTRLLP 301 (422)
T ss_pred CCCC--CCCCCeeEEEEecC------------CccccceeeEEcCcEEEEEC
Confidence 3444 45679999999973 2334557899999 999976
|
Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions. |
| >TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.7e-21 Score=188.00 Aligned_cols=166 Identities=17% Similarity=0.123 Sum_probs=128.7
Q ss_pred CCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccC--CCCcEEEEecChHHHHHHHH-HHHHHHcCCEEEE
Q 010568 222 NDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKL--TSEDVYVSYLPLAHIFDRAI-EEVFISNGAAIGF 298 (507)
Q Consensus 222 ~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~--~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~v~l 298 (507)
+..++++|||||||.||+|.++|.++...+..+...+ ++ ...+++++.+|++|.+|+.+ ++.++..|+++++
T Consensus 95 ~~~~~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~ 169 (386)
T TIGR02372 95 PTARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKIL-----GERPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQ 169 (386)
T ss_pred CCceEEEECCCCCCCCceeEeeHHHHHHHHHHHHHHh-----CcCCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEe
Confidence 5578999999999999999999999998887755443 33 34468999999999999865 6778899999988
Q ss_pred ecC-CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhHHhhhhcCCCCCCCchhhhHHhHH
Q 010568 299 WRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFD 377 (507)
Q Consensus 299 ~~~-~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 377 (507)
.+. ++..+++.++.+ |+++++|.+++.+.+.. . ++
T Consensus 170 ~~~~~~~~~l~~i~~~--t~~~~~P~~l~~l~~~~----~-------------------------------------~l- 205 (386)
T TIGR02372 170 LAAAPASGIMRHARPG--DLIVGTPFIWEQLADLD----Y-------------------------------------RL- 205 (386)
T ss_pred cCCCChHHHHHhhccC--CEEEECcHHHHHHHhhC----c-------------------------------------CC-
Confidence 765 778888877653 89999999999875410 0 00
Q ss_pred HHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhC-CcEEeecccccCccceeccCCCCCccCCcccccccCceEEE
Q 010568 378 KVKQSFGGRVRLILSGAAPLTPHVETFLRVVAC-AHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCL 451 (507)
Q Consensus 378 ~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~-~~v~~~YG~tE~~~~~~~~~~~~~~~~~s~G~p~pg~~i~i 451 (507)
++++. ++||+++++++.+.+++. + ..+++.||+||+++++.... ++..|+|+|++++++
T Consensus 206 -------~slr~-i~gGa~l~~~l~~~~~~~-g~~~v~~~YG~TEt~~i~~~~~------~~~~~~~~p~~~~~~ 265 (386)
T TIGR02372 206 -------PGVVG-VSSGAPSTAATWRCLLAA-GLARLLEVYGATETGGIGLREA------PDDPFRLLPDLACFA 265 (386)
T ss_pred -------Cccee-EecCCCCCHHHHHHHHHh-cccchhheeccccccccccccC------CCCCcccCCCccccC
Confidence 25665 678999999999999885 5 47999999999987654322 244678889887654
|
Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names. |
| >TIGR03335 F390_ftsA coenzyme F390 synthetase | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-18 Score=176.47 Aligned_cols=201 Identities=18% Similarity=0.171 Sum_probs=147.3
Q ss_pred CCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHH-HHHHHHcCCEEE
Q 010568 219 KKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAI-EEVFISNGAAIG 297 (507)
Q Consensus 219 ~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~v~ 297 (507)
...++++.+.+||||||.||++.++|.++..........+ ...++.++|+++...+..+..+... .+.++..|++++
T Consensus 83 ~~~~~i~~i~~TSGTTG~Pk~v~~T~~dl~~~~~~~~r~~--~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi 160 (445)
T TIGR03335 83 ADWKDIYTIHETSGTSGTPKSFFLTWDDWKRYAEKYARSF--VSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSII 160 (445)
T ss_pred CCHHHeEEEEeCCCCCCCcceeeecHHHHHHHHHHHHHHH--HHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEE
Confidence 3456888999999999999999999999877665543322 1236788899999988887655543 456678888765
Q ss_pred EecCCHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhHHhhhhcCCCCCCCchhhhHHhHH
Q 010568 298 FWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFD 377 (507)
Q Consensus 298 l~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 377 (507)
... .....++.|++++++++.++|+.+..+++.+........
T Consensus 161 ~~~-~~~~~~~~i~~~~~t~l~~~ps~ll~La~~~~~~g~~~~------------------------------------- 202 (445)
T TIGR03335 161 PEG-KCTFPIRIIESYRPTGIVASVFKLLRLARRMKAEGIDPA------------------------------------- 202 (445)
T ss_pred cCC-chhHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcc-------------------------------------
Confidence 433 445678999999999999999998887664433211000
Q ss_pred HHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhCCcEEeecccccCccceeccCCCCCccCCcccccc--cCceEEEeecC
Q 010568 378 KVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPV--PNVDVCLESVP 455 (507)
Q Consensus 378 ~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~s~G~p~--pg~~i~ivd~~ 455 (507)
..++|.+++||+++++++.+.+.+.+|+++++.||+||++... .+.. ..|..+ +++.++|+| +
T Consensus 203 ------~~~lr~ii~gGE~l~~~~r~~ie~~~g~~v~~~YG~TE~~~~~-~c~~-------~~g~h~~~d~~~vEIvD-p 267 (445)
T TIGR03335 203 ------ESSIRRLVVGGESFADESRNYVEELWGCEVYNTYGSTEGTMCG-ECQA-------VAGLHVPEDLVHLDVYD-P 267 (445)
T ss_pred ------cCcceEEEEcCCCCCHHHHHHHHHHhCCcEEecCChhhhhheE-EecC-------CCCccccCCceEEEEEc-C
Confidence 0278999999999999999999998999999999999986322 2211 123434 457889999 6
Q ss_pred CCccccCCCCCCceEEEecC
Q 010568 456 EMEYDALSSTPRGEVCVKGS 475 (507)
Q Consensus 456 ~~~~~~~~~g~~Gel~v~g~ 475 (507)
+++ .+++.|+.|||++++-
T Consensus 268 ~~~-~~vp~Ge~GELvvT~L 286 (445)
T TIGR03335 268 RHQ-RFLPDGECGRIVLTTL 286 (445)
T ss_pred CCC-CCCcCCCceEEEEEec
Confidence 654 3445679999999874
|
This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen. |
| >KOG3628 consensus Predicted AMP-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.8e-16 Score=161.14 Aligned_cols=404 Identities=14% Similarity=0.133 Sum_probs=268.0
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHH-HHHHCCCCCCCEEEEEeCCc--hhhH
Q 010568 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVN-AIRTCGVEERGKCGIYGVNC--PEWI 117 (507)
Q Consensus 41 ~~~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~-~L~~~gv~~gd~V~i~~~n~--~~~~ 117 (507)
..+..+..+++++-..++...|.+.. |.++. ...+||..+..++.++|+ .|.+-|+.++|+|.++...+ .+++
T Consensus 91 ~a~~d~~avl~~~~nhs~~~ta~i~i---d~kgk-~~~~twdkl~~rA~k~a~~~l~ksgl~~~~~vvL~Y~~~e~ie~~ 166 (1363)
T KOG3628|consen 91 MALTDIIAVLRYRRNHSATSTAHICI---DKKGK-ATSITWDKLLNRAEKVAHVELNKSGLKPGDRVVLYYRKCEAIEFL 166 (1363)
T ss_pred hhhcchHHHHHhhccCCCCCceEEEE---cCCCc-eeeeeHHHHHHHHHhhccHHhhccCCCCCcEEEEEEEhhhhhHHh
Confidence 44556677888888888888999887 66666 789999999999999999 67778999999999998888 8999
Q ss_pred HHHHHHHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCc
Q 010568 118 IGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGL 197 (507)
Q Consensus 118 ~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 197 (507)
+..++|...|.+++|+.+..+.+++..+++....+.+++.......+.+..... .+.+. .
T Consensus 167 isl~gc~l~g~~~vp~~e~~s~~el~~i~~~~~~~~~l~t~a~~r~~~~~~~~~--s~~k~----------v-------- 226 (1363)
T KOG3628|consen 167 ISLFGCFLLGIVAVPLSELSSSEELKDIVNPTPERVALTTEAGERAFINDNSPV--SLAKA----------V-------- 226 (1363)
T ss_pred hhhccccccceeeccchhhhhhhhhhcccCCCccceEeehhhhHHHhhhccCcc--cHHHH----------H--------
Confidence 999999999999999999999999999999999999998876554443322111 00000 0
Q ss_pred eEeeHHHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhh---------------hhcc
Q 010568 198 AVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLL---------------ESVN 262 (507)
Q Consensus 198 ~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~---------------~~~~ 262 (507)
.+....++-..........+...-. ..+|-||++++|.--+++.+|. ++.+...+..+. ....
T Consensus 227 ~~w~t~~~k~~~~~~k~~~P~~~~~-~~~i~~t~s~l~~~~g~V~~~~-~~~q~r~~~~~~nt~Pa~~~~~~~~~~~~~v 304 (1363)
T KOG3628|consen 227 AWWKTNDFKGNYTKDKIKKPRMQLP-YGYIEFTRSPLGNLIGVVYKHK-FLPQMRVLTSIPNTNPARFAAAFYGCLHAHV 304 (1363)
T ss_pred HhhhcccccceeehhhccCCceeee-eEEEEEeccchhceeeeEeecc-cccchhhhhhccCcChHHHHHhhhcchhhhc
Confidence 0000001110000011222233333 8899999999999999999988 554444332111 1112
Q ss_pred ccCCCCcEEEEecChHHHHHHHH-HHHHHHcCCEEEEecC----CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhh
Q 010568 263 EKLTSEDVYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKIS 337 (507)
Q Consensus 263 ~~~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~v~l~~~----~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~ 337 (507)
......+.++.........|+.+ ++.+++.|.+...++. .|-.+.+.+.+++.+++..--..+......+.....
T Consensus 305 ~~~~~~~~~l~~~~~s~~lGlilGV~~alfsg~c~i~~p~~~l~~pG~~~~l~~k~R~~~~ltd~~~Lkq~~~ny~~~p~ 384 (1363)
T KOG3628|consen 305 FPVPSEDVLLTNLDPSQQLGLILGVLVALFSGYCTIGCPKEVLKPPGLIANLITKYRATWSLTDYAGLKQPVYNYQEDPK 384 (1363)
T ss_pred cccCcccceeeccCcccccchhhhhhhhhhcCceeecCchhhcCCCcchhhhhccceeEEEeecccccCcccccccCCcc
Confidence 24466777777777777778876 7788999999888775 677888899999999987765555554433222211
Q ss_pred ccchhHHHHHHHHHHhHHhhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHh----h----
Q 010568 338 SGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVV----A---- 409 (507)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~----~---- 409 (507)
+. +.+.+-++...+++|.+++.-..+..+.......+ .
T Consensus 385 a~----------------------------------~s~~k~~t~d~sslk~C~Vtc~~vd~~~~~ivs~~wlk~lg~~~ 430 (1363)
T KOG3628|consen 385 AT----------------------------------LSFKKYKTPDLSSLKGCMVTCTAVDTEFQEIVSDRWLKPLGETN 430 (1363)
T ss_pred cc----------------------------------cchhhccCCCccceeeeEEeeeecchHHHHHHHHhhcccccCcC
Confidence 11 11222222233689999998888887643322211 1
Q ss_pred --------------CCcEEeecccccCccceeccCCCCC-c----------------------------cCCcccccccC
Q 010568 410 --------------CAHVLQGYGLTETCAGTFVSLPNEM-S----------------------------MIGTVGPPVPN 446 (507)
Q Consensus 410 --------------~~~v~~~YG~tE~~~~~~~~~~~~~-~----------------------------~~~s~G~p~pg 446 (507)
|.-....=+++|.+......+.... . ..-.+|...||
T Consensus 431 ~~~~~~p~l~ll~hGgi~is~k~~~~~~~~~~r~p~~~~~~~~~e~ll~~~~L~~~~V~v~~e~~is~~s~kd~~~i~~g 510 (1363)
T KOG3628|consen 431 VKVVDFPILCLLWHGGIPISFKDWMEIGTVSIRRPEQMADTLPGEGLLSKEALKLNEVEVDTEDDISSLSVKDVLCIMPG 510 (1363)
T ss_pred cceeechhhhhhhcCceEEEeccchhhhcccccCcccccccCccceeeeccccccceEEEcchhhhhhcCccccceeccc
Confidence 2222233344566554433322100 0 01125666666
Q ss_pred -ceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhcc------c-------Cceeec-cEEEec
Q 010568 447 -VDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV------D-------GWFHTG-MGVWEQ 506 (507)
Q Consensus 447 -~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~------d-------gw~~TG-lg~~d~ 506 (507)
+.+.|++ ++...-|..+++|||||.++++..+||.-+..|...|. . .|+||| +|++.+
T Consensus 511 ~~t~~vv~--~~t~~LC~~~eVGEIwVsS~~~~~~~~al~~~t~~~F~~~~~~s~~~~~~n~~FmRtGLlGFv~~ 583 (1363)
T KOG3628|consen 511 DATLAVVN--PDTNQLCKTDEVGEIWVSSNSLGKLFYALDKQTENTFKATPVESSGKPPSNVPFMRTGLLGFVHN 583 (1363)
T ss_pred ceEEEEeC--CCcccccccCcceeEEEecCCcccceeeccccccceEEeeeccccCCCCccchhhhhcceeeeeC
Confidence 3444555 45555666789999999999999999998888877772 1 288999 999875
|
|
| >KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.1e-14 Score=154.93 Aligned_cols=325 Identities=16% Similarity=0.125 Sum_probs=205.1
Q ss_pred CCCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHHH
Q 010568 42 GMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGME 121 (507)
Q Consensus 42 ~~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~l 121 (507)
.+.++.+.+++.+...|...+...... ....+....+||++....++.+++.|...|...|+.|+++|..+.++++.++
T Consensus 34 ~~g~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~i~~~t~r~~~~~~n~~~q~l~~~~~~~~~~v~i~~~~~~d~~v~v~ 112 (1032)
T KOG1178|consen 34 FMGTLEDSFRRELAEAPENTGHVIIPT-ASESGIIDSFTYRLIRLLSNIIAQFLVSLGSLRGTTVAIYMLPSVDLVVSVF 112 (1032)
T ss_pred hhcchhhHHHHHHhhcccCCCceEeec-ccccccccchhhhhhhcccchhHHHhhhcccccCceEEEeccCcCCeeeeee
Confidence 345777889999999999988776532 3334445679999999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEeeccCCCC----hHHHHHHHhhcCcc-EEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcC
Q 010568 122 ACNALGLHCVPLYDTLG----AGAVEFIICHSGVS-IAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYG 196 (507)
Q Consensus 122 A~~~~G~~~v~l~~~~~----~~~l~~~l~~~~~~-~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 196 (507)
+.+++|..+++++|+++ ++++..+....... .-+... .+.....+....+.
T Consensus 113 ~~~~~g~~~~~idp~~~~~e~~~~~~~ia~~~~s~~~~i~~~--l~i~~~~~~~~~~~---------------------- 168 (1032)
T KOG1178|consen 113 AVLAAGLTFLPIDPSWPNSELAGYLMRIAHFLTSVELEIVRR--LNIIDILLNSLFPK---------------------- 168 (1032)
T ss_pred ehhhcceEEEEecCCCcccccchHHHhhhhhheeccceehhh--hhhHHHHhhccccc----------------------
Confidence 99999999999999999 33222221111000 000000 00000000000000
Q ss_pred ceEeeHHHHH-hcccc-CCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEe
Q 010568 197 LAVYSWDEFL-QLGEN-KQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSY 274 (507)
Q Consensus 197 ~~~~~~~~l~-~~~~~-~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~ 274 (507)
..+...++.+ ..... .....+..-++..+.+.||||+||.||+|..+|..+.....++...+ ..+..+++--.
T Consensus 169 ~sv~~~~~~f~~~~~~~~~r~~~~~~~ds~~~l~~tSgs~G~pk~v~~~~~sl~~~fdw~~~~f-----~~t~s~~~~~~ 243 (1032)
T KOG1178|consen 169 LSVETIADSFQMVLHNEDTREIRVGGNDSTALLSFTSGSTGVPKGVAGTHFSLANAFDWMFTTF-----PPTGSDRFTFK 243 (1032)
T ss_pred cchhhccchhhhhhccCCCcceeeecccccceEeecccccccccccchhHHHHHhhhhhccccC-----CcCccchhhhh
Confidence 0000111111 11111 11222344678899999999999999999999999999999965544 66666665222
Q ss_pred cCh-HHHHHHHHHHHHHHcCCEEEEecC----CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHH
Q 010568 275 LPL-AHIFDRAIEEVFISNGAAIGFWRG----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNI 349 (507)
Q Consensus 275 ~pl-~h~~g~~~~~~~l~~G~~v~l~~~----~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~ 349 (507)
... ++..-...+.+.+..|+.+..+-. ++..+...+++++++..+.+|++.++++..........
T Consensus 244 ~~~~~~d~i~~~~~~~L~~~~~l~~p~~~~~~~~~~l~~~le~y~i~~~~~~~a~~~~l~~~~~~~~~~l---------- 313 (1032)
T KOG1178|consen 244 TSVYFDDTIQKFIGALLFNGNNLLVPTATIKDTPGQLASTLERYGITVSHLLPAMCQLLLAILTTSLPLL---------- 313 (1032)
T ss_pred heeecccchHHHHhhHhhcCceeecccccCccchhhHHHHHHhhhheeeeechhhhhhhhhhcCcchhhh----------
Confidence 222 222222234444556665554432 57899999999999999999999988876432210000
Q ss_pred HHHhHHhhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhC-CcEEeecccccCccceec
Q 010568 350 AYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVAC-AHVLQGYGLTETCAGTFV 428 (507)
Q Consensus 350 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~-~~v~~~YG~tE~~~~~~~ 428 (507)
+...-+.++ ..+ .+.|+....+|++....+...+...+- .-...-|+.++..+....
T Consensus 314 ~~~~~~~dl------------~~~----------~~~Lkl~~~~~ep~~v~l~~s~~~~~~~~~~~~~y~s~~~~~~~s~ 371 (1032)
T KOG1178|consen 314 EHAFSLSDL------------LTK----------RSCLKLVVLGGEPLLVSLYTSTFDLLAEIFFGLPYLSTDPTGLVSY 371 (1032)
T ss_pred hhhhhcccc------------ccc----------chhheeeeecCCccchhhhhhhhhcccceeeeecccCCCCccceeH
Confidence 000000000 000 037899999999999999886655441 222223888887776554
|
|
| >COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.3e-13 Score=133.94 Aligned_cols=203 Identities=19% Similarity=0.170 Sum_probs=148.2
Q ss_pred CCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChH-HHHHHHHHHHHHHcCCEE
Q 010568 218 VKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLA-HIFDRAIEEVFISNGAAI 296 (507)
Q Consensus 218 ~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~-h~~g~~~~~~~l~~G~~v 296 (507)
....++...|-.||||||+|+.+.++...+......+...+ ...+...+|++....-.. +..|+...+++--.|+++
T Consensus 86 ~~~~~~i~~ihaSSGTTGkPt~~~~t~~D~~~wa~~~aR~~--~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~v 163 (438)
T COG1541 86 AVPKEEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSL--YSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATV 163 (438)
T ss_pred cccccceEEEEccCCCCCCceeeecCHHHHHHHHHHHHHHH--HHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEE
Confidence 34556777788899999999999999998887777766654 334667778777665422 223334445555566665
Q ss_pred EEecC-CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhHHhhhhcCCCCCCCchhhhHHh
Q 010568 297 GFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIV 375 (507)
Q Consensus 297 ~l~~~-~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 375 (507)
+=... +.+..++.++.+++|++.++|+.+..|++.+.+..... ++
T Consensus 164 ip~~~g~~~~~~~l~~df~~tvI~~tps~~l~lae~~~~~G~~~--------------------------------~~-- 209 (438)
T COG1541 164 IPISGGNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEEGIDP--------------------------------DK-- 209 (438)
T ss_pred EccCCccHHHHHHHHHhcCCcEEEEChHHHHHHHHHHHHcCCCh--------------------------------hh--
Confidence 54443 88999999999999999999999999998876664111 11
Q ss_pred HHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhCCcEEeecccccCccce-eccCCCCCccCCcccccc--cCceEEEe
Q 010568 376 FDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGT-FVSLPNEMSMIGTVGPPV--PNVDVCLE 452 (507)
Q Consensus 376 ~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~~~v~~~YG~tE~~~~~-~~~~~~~~~~~~s~G~p~--pg~~i~iv 452 (507)
.++|.+++|+|++++++.+.+.+.+|+..++.||+||..+.. ..+.... |..+ ...-+.|+
T Consensus 210 ---------~~lk~~i~gaE~~see~R~~ie~~~g~~~~diYGltE~~g~g~~eC~~~~-------glhi~eD~~~~Ei~ 273 (438)
T COG1541 210 ---------LSLKKGIFGAEPWSEEMRKVIENRFGCKAFDIYGLTEGFGPGAGECTERN-------GLHIWEDHFIFEIV 273 (438)
T ss_pred ---------cceeEEEEecccCCHHHHHHHHHHhCCceeeccccccccCCccccccccc-------CCCcchhhceeeee
Confidence 379999999999999999999999999999999999996653 2222211 2222 45678888
Q ss_pred ecCCCccccCCCCCCceEEEec
Q 010568 453 SVPEMEYDALSSTPRGEVCVKG 474 (507)
Q Consensus 453 d~~~~~~~~~~~g~~Gel~v~g 474 (507)
|...++. .+.|+.|||.++.
T Consensus 274 dP~t~e~--l~dge~GelV~T~ 293 (438)
T COG1541 274 DPETGEQ--LPDGERGELVITT 293 (438)
T ss_pred cCCcCcc--CCCCCeeEEEEEe
Confidence 8333443 3355899999876
|
|
| >TIGR02304 aden_form_hyp probable adenylate-forming enzyme | Back alignment and domain information |
|---|
Probab=99.15 E-value=2e-09 Score=107.46 Aligned_cols=150 Identities=19% Similarity=0.186 Sum_probs=101.1
Q ss_pred eEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEe--cChHHHHHHHHHHHHHHcCCE-EEEec
Q 010568 224 ICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSY--LPLAHIFDRAIEEVFISNGAA-IGFWR 300 (507)
Q Consensus 224 ~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~--~pl~h~~g~~~~~~~l~~G~~-v~l~~ 300 (507)
-..+..||||||.|-.+..+................ ..++..++++... .+. + ++..+..... +..++
T Consensus 101 ~~~v~~TSGSSG~p~~f~~~~~~~~~~~a~~~~~~~--~~g~~~g~r~a~~~~~~~-~------ly~~~~~~~~~~~~~~ 171 (430)
T TIGR02304 101 NISVGLSSGTSGRRGLFVVSPEEQQMWAGGILAKVL--PDGLFAKHRIAFFLRADN-N------LYQSVNNRWISLDFFD 171 (430)
T ss_pred cEEEEECCCCCCCceEEEECHHHHHHHHHHHHhhhC--ccccccCCcEEEEEccCh-h------HHHHHHhccceeeecC
Confidence 456778999999999999998876444333222111 1133333443333 211 1 1111222111 22222
Q ss_pred --CCHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhHHhhhhcCCCCCCCchhhhHHhHHH
Q 010568 301 --GDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDK 378 (507)
Q Consensus 301 --~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 378 (507)
.+.+..++.|++++|+++.+.|+++..|++........
T Consensus 172 l~~~~~~~l~~L~~~~P~~L~g~pS~l~~LA~~~~~~~l~---------------------------------------- 211 (430)
T TIGR02304 172 LLAPFQAHIKRLNQRKPSIIVAPPSVLRALALEVMEGELT---------------------------------------- 211 (430)
T ss_pred CCcCHHHHHHHHHHhCCCEEEEcHHHHHHHHHHHHhcCCC----------------------------------------
Confidence 37889999999999999999999999998865443210
Q ss_pred HHHHcCCceEEEEEcCCCCCHHHHHHHHHhhCCcEEeecccccCccceecc
Q 010568 379 VKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVS 429 (507)
Q Consensus 379 ~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~~~v~~~YG~tE~~~~~~~~ 429 (507)
..++.++++||+++++..+.+++.||++|++.||+|| |.++..+
T Consensus 212 ------~~~k~ii~~~E~l~~~~r~~Ie~~fg~~V~~~YG~tE-g~la~eC 255 (430)
T TIGR02304 212 ------IKPKKVISVAEVLEPQDRELIRNVFKNTVHQIYQATE-GFLASTC 255 (430)
T ss_pred ------CCceEEEEccCCCCHHHHHHHHHHhCCCeeEccCCch-hheEEec
Confidence 1578999999999999999999999999999999999 5544433
|
Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase. |
| >PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.1e-05 Score=78.97 Aligned_cols=203 Identities=16% Similarity=0.185 Sum_probs=118.6
Q ss_pred CCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCC-CCcEEEEecChHH---HHHH--HHHHHHHHcC
Q 010568 220 KKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLT-SEDVYVSYLPLAH---IFDR--AIEEVFISNG 293 (507)
Q Consensus 220 ~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~-~~d~~l~~~pl~h---~~g~--~~~~~~l~~G 293 (507)
..+++..++.||||||.|--+.+.+..+..+...+...+.... ... ..-.++...|-.. ..+. ...+..+..+
T Consensus 87 ~~e~~~~~~tSSGTtG~~S~i~~D~~t~~~~~~~~~~~~~~~~-~~~~~~~~il~l~p~~~~~~~~~~~~~~~~~~~~~~ 165 (365)
T PF04443_consen 87 PEEEVEKVFTSSGTTGQPSRIFRDRETAERQQKSLNKIFQHFL-GPSRLPMLILDLSPSPENRNSFSARYAGILGELFFG 165 (365)
T ss_pred ChhhheeEEECCCCCCCCcEEEECHHHHHHHHHHHHHHHHhhc-ccccCCeEEEEecCCcccccchHHHHHHHHhhcccC
Confidence 4566778899999999987777777777666655554442111 121 2223344334321 1111 1122234455
Q ss_pred CEEEEecC--CHHHHHHHh----hhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhHHhhhhcCCCCCCC
Q 010568 294 AAIGFWRG--DVKLLLEDI----GELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEA 367 (507)
Q Consensus 294 ~~v~l~~~--~~~~~~~~i----~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 367 (507)
....+-.. +.+.++..+ .+.++-.+++.|.++-.++..+++......
T Consensus 166 ~~~~l~~~~ld~~~~~~~L~~~~~~~~pv~l~Gftf~~~~~~~~l~~~~~~~~--------------------------- 218 (365)
T PF04443_consen 166 SRFALDNDELDLEGLIEALFRAEHSGEPVLLFGFTFFIWFLLDELEERGIRFR--------------------------- 218 (365)
T ss_pred ceeeecCCccCHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHHHHhcCCccc---------------------------
Confidence 55333222 566565555 456788899999988877765554432111
Q ss_pred chhhhHHhHHHHHHHcCCceEEEEEcC------CCCC-HHHHHHHHHhhCC----cEEeecccccCccceeccCCCCCcc
Q 010568 368 SPIADKIVFDKVKQSFGGRVRLILSGA------APLT-PHVETFLRVVACA----HVLQGYGLTETCAGTFVSLPNEMSM 436 (507)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~lr~i~~~G------~~l~-~~l~~~~~~~~~~----~v~~~YG~tE~~~~~~~~~~~~~~~ 436 (507)
+ .+..+.+-.|| +.++ .++.+.+.+.+|+ .+++.|||||.......+.....
T Consensus 219 --------L-------~~~s~vi~~GGwK~~~~e~v~r~ef~~~l~~~~Gv~~~~~i~~~ygmtEl~s~~~~~~~~~~-- 281 (365)
T PF04443_consen 219 --------L-------PKGSIVIHGGGWKGRRKEAVSREEFYARLQEVFGVIPIENIYDMYGMTELNSQAYECGHGHF-- 281 (365)
T ss_pred --------C-------CCCCEEEeCCCCCccccCccCHHHHHHHHHHHHCCCCHHHeeeeeeccccchhheeCCCCcc--
Confidence 0 01345666666 4465 4677788888887 69999999997765444322111
Q ss_pred CCcccccccCceEEEeecCCCccccCCCCCCceEEEecCC
Q 010568 437 IGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGST 476 (507)
Q Consensus 437 ~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~ 476 (507)
+.|-- +.|.| +++ ..+++.|+.|-|.+-.+.
T Consensus 282 ------~~p~w-V~iRD-p~t-l~~~~~Ge~Gli~vidl~ 312 (365)
T PF04443_consen 282 ------HVPPW-VIIRD-PET-LEPLPPGETGLIQVIDLA 312 (365)
T ss_pred ------cCCCe-EEEEC-CCC-CcCCCCCCeeEEEEEccc
Confidence 11211 66778 543 456777899999887764
|
LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence |
| >COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.16 Score=50.57 Aligned_cols=115 Identities=10% Similarity=-0.033 Sum_probs=85.0
Q ss_pred eEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCc--hhhHHHHHHHHhcCCEEeeccCCCChHHHHHHHhhcCccE
Q 010568 76 YVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNC--PEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSI 153 (507)
Q Consensus 76 ~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~--~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ 153 (507)
..-+|+.++...+..+|+.|...|..+||+|..+..-. ..-+-..+|+.++|+.++|+.+. .-+....++++.++.+
T Consensus 107 ~~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~~g-~~~~~~~l~~df~~tv 185 (438)
T COG1541 107 VFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPISGG-NTERQLELMKDFKPTV 185 (438)
T ss_pred eeecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccCCc-cHHHHHHHHHhcCCcE
Confidence 34689999999999999999999999999988876622 22277889999999999999885 3445567789999999
Q ss_pred EEecCCChhHHhhcCCCC-----CCCccEEEEec-CCChhhHHH
Q 010568 154 AFVEEKKIPEMLKTFPKT-----TEHLKTIVSFS-KVKPEQREE 191 (507)
Q Consensus 154 vi~~~~~~~~~~~~~~~~-----~~~~~~v~~~~-~~~~~~~~~ 191 (507)
|.+...+...+.+...+. ...++.++.-. ..++..+..
T Consensus 186 I~~tps~~l~lae~~~~~G~~~~~~~lk~~i~gaE~~see~R~~ 229 (438)
T COG1541 186 IAATPSYLLYLAEEAEEEGIDPDKLSLKKGIFGAEPWSEEMRKV 229 (438)
T ss_pred EEEChHHHHHHHHHHHHcCCChhhcceeEEEEecccCCHHHHHH
Confidence 999988766554444332 24555555543 344444433
|
|
| >PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.26 Score=51.39 Aligned_cols=54 Identities=19% Similarity=0.189 Sum_probs=33.8
Q ss_pred CceEeeHHHHHhcccc-CCCCCCCCCCCCeEEEEeccCCCCC-CceeeeccHHHHH
Q 010568 196 GLAVYSWDEFLQLGEN-KQFDLPVKKKNDICTIMYTSGTTGD-PKGVMVSNENIVT 249 (507)
Q Consensus 196 ~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~a~i~~TSGtTG~-pK~v~~sh~~l~~ 249 (507)
.+.+.+++++...... ..-......++.+.+...||||||. ||-+++|...+..
T Consensus 53 ~VPi~~Yed~~pyIeR~~~Ge~~vL~~~~~~~f~~TSGTTg~~~K~IP~T~~~l~~ 108 (528)
T PF03321_consen 53 RVPITDYEDYRPYIERIAEGEENVLTPGPPIYFALTSGTTGGKSKLIPYTKEFLKE 108 (528)
T ss_dssp HS--BEHHHHHHHHHHHHTT--CCTSSS--SEEEEEEEEETTEEEEEEESHHHHHH
T ss_pred hCCCccHHHHHHHHHHHhcCCCCCCCCCCCCeEEeCCCCCCCCCceeeccHHHHHH
Confidence 4456777776543321 1111224466778899999999999 9999999887655
|
The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A. |
| >PLN02620 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=91.52 E-value=8.1 Score=40.64 Aligned_cols=55 Identities=18% Similarity=0.212 Sum_probs=35.8
Q ss_pred cCceEeeHHHHHhccccCC-CCC-CCCCCCCeEEEEeccCCCC-CCceeeeccHHHHH
Q 010568 195 YGLAVYSWDEFLQLGENKQ-FDL-PVKKKNDICTIMYTSGTTG-DPKGVMVSNENIVT 249 (507)
Q Consensus 195 ~~~~~~~~~~l~~~~~~~~-~~~-~~~~~~~~a~i~~TSGtTG-~pK~v~~sh~~l~~ 249 (507)
..+.+.+++++........ -+. ....++.+.+...|||||| .+|-+.+++..+..
T Consensus 72 ~~VPv~~Yedl~pyI~Ri~~Ge~s~vL~~~pi~~F~~SSGTT~g~~K~IP~t~e~l~~ 129 (612)
T PLN02620 72 KVMPVITYEDIQPDINRIANGDTSPILCSKPISEFLTSSGTSGGERKLMPTIEEELGR 129 (612)
T ss_pred HhCCCccHHHhHHHHHHHHcCCCCCccCCCChhhhhhcCCCCCCceeeeecCHHHHHH
Confidence 3456667777644322111 111 2234677778899999997 59999999987665
|
|
| >TIGR03335 F390_ftsA coenzyme F390 synthetase | Back alignment and domain information |
|---|
Probab=86.74 E-value=4.7 Score=41.22 Aligned_cols=83 Identities=12% Similarity=-0.013 Sum_probs=63.2
Q ss_pred EEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchh--hHHHHHHHHhcCCEEeeccCCCChHHHHHHHhhcCccEE
Q 010568 77 VWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPE--WIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIA 154 (507)
Q Consensus 77 ~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~--~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~v 154 (507)
..+|..++...+..+++.+...|+.+||++.+..+.... .....+++..+|+.+++... .+....+++..++..+
T Consensus 104 v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~~---~~~~~~~i~~~~~t~l 180 (445)
T TIGR03335 104 FFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEGK---CTFPIRIIESYRPTGI 180 (445)
T ss_pred eeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCCc---hhHHHHHHHHhCCCEE
Confidence 357889999888888888888999999999998876543 23456788899998876653 2345677899999998
Q ss_pred EecCCChh
Q 010568 155 FVEEKKIP 162 (507)
Q Consensus 155 i~~~~~~~ 162 (507)
+.......
T Consensus 181 ~~~ps~ll 188 (445)
T TIGR03335 181 VASVFKLL 188 (445)
T ss_pred EECHHHHH
Confidence 87655433
|
This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen. |
| >TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase | Back alignment and domain information |
|---|
Probab=86.03 E-value=4.7 Score=40.86 Aligned_cols=95 Identities=17% Similarity=0.067 Sum_probs=68.8
Q ss_pred cCcCCceE--EEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCch--hhHHHHHHHHhcCCEEeeccCCCChHHHHHH
Q 010568 70 DGKAGKYV--WKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCP--EWIIGMEACNALGLHCVPLYDTLGAGAVEFI 145 (507)
Q Consensus 70 ~~~~~~~~--~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~--~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~ 145 (507)
.|.++..+ .+|...+......+++.+...|+++||++....+... ..+...+++..+|+.++++++.. .+.+-..
T Consensus 84 SGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~ 162 (422)
T TIGR02155 84 SGTTGKPTVVGYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPISGGQ-TEKQVQL 162 (422)
T ss_pred CCCCCCCeEeccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecCCCC-HHHHHHH
Confidence 44445433 4577777766667778888889999999887665442 22334677889999999887754 5778889
Q ss_pred HhhcCccEEEecCCChhHHh
Q 010568 146 ICHSGVSIAFVEEKKIPEML 165 (507)
Q Consensus 146 l~~~~~~~vi~~~~~~~~~~ 165 (507)
|+..++.+++........+.
T Consensus 163 i~~~~~t~l~~~Ps~l~~L~ 182 (422)
T TIGR02155 163 IQDFKPDIIMVTPSYMLNLL 182 (422)
T ss_pred HHHHCCCEEEEcHHHHHHHH
Confidence 99999999998877655443
|
Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions. |
| >TIGR03089 conserved hypothetical protein TIGR03089 | Back alignment and domain information |
|---|
Probab=80.78 E-value=10 Score=34.72 Aligned_cols=54 Identities=15% Similarity=0.034 Sum_probs=43.9
Q ss_pred HHCCCCCCCEEEEEeCCchh--hHHHHHHHHhcCCEEeeccCCCChHHHHHHHhhcCc
Q 010568 96 RTCGVEERGKCGIYGVNCPE--WIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGV 151 (507)
Q Consensus 96 ~~~gv~~gd~V~i~~~n~~~--~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~ 151 (507)
...|+.++|++. .+|-..- ....+++++..|+..+.+ ++++++.+-+.+++.++
T Consensus 171 ~~~~l~~~D~~l-~~Pl~H~~gl~~~~~~~l~~G~t~v~~-~rFd~~~~l~~i~~~~v 226 (227)
T TIGR03089 171 RAAGLPPGDRVL-VLAWTDLEDFLATLLAPLAAGGSLVLV-THPDPARLDQIAETERV 226 (227)
T ss_pred hhcCCCCCCeEE-ecCCCchHHHHHHHHHHhccCceEEEe-cCCCHHHHHHHHHhhcC
Confidence 567899999999 8887643 334689999999998877 68999999888888765
|
This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 507 | ||||
| 2d1q_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 4e-15 | ||
| 2d1s_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 4e-15 | ||
| 3nyq_A | 505 | Malonyl-Coa Ligase Ternary Product Complex With Met | 1e-14 | ||
| 2d1t_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 1e-14 | ||
| 3tsy_A | 979 | 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr | 1e-13 | ||
| 4g37_A | 555 | Structure Of Cross-Linked Firefly Luciferase In Sec | 6e-12 | ||
| 3iep_A | 551 | Firefly Luciferase Apo Structure (P41 Form) Length | 6e-12 | ||
| 3a9u_A | 536 | Crystal Structures And Enzymatic Mechanisms Of A Po | 7e-12 | ||
| 4g36_A | 555 | Photinus Pyralis Luciferase In The Adenylate-Formin | 7e-12 | ||
| 1ba3_A | 550 | Firefly Luciferase In Complex With Bromoform Length | 8e-12 | ||
| 3qya_A | 582 | Crystal Structure Of A Red-Emitter Mutant Of Lampyr | 3e-11 | ||
| 4fuq_A | 503 | Crystal Structure Of Apo Matb From Rhodopseudomonas | 5e-11 | ||
| 4gxr_A | 503 | Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len | 3e-10 | ||
| 4fut_A | 503 | Crystal Structure Of Atp Bound Matb From Rhodopseud | 3e-10 | ||
| 4gxq_A | 506 | Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer | 3e-10 | ||
| 1ult_A | 541 | Crystal Structure Of Tt0168 From Thermus Thermophil | 4e-10 | ||
| 2vsq_A | 1304 | Structure Of Surfactin A Synthetase C (Srfa-C), A N | 9e-10 | ||
| 3r44_A | 517 | Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas | 9e-07 | ||
| 3ipl_A | 501 | Crystal Structure Of O-Succinylbenzoic Acid-Coa Lig | 1e-06 | ||
| 3t5b_A | 396 | Crystal Structure Of N-Terminal Domain Of Facl13 Fr | 1e-06 | ||
| 3g7s_A | 549 | Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Li | 1e-05 | ||
| 3dhv_A | 512 | Crystal Structure Of Dlta Protein In Complex With D | 4e-05 | ||
| 3fcc_A | 512 | Crystal Structure Of Dlta Protein In Complex With A | 4e-05 | ||
| 3vnq_A | 544 | Co-crystal Structure Of Nrps Adenylation Protein Cy | 7e-05 | ||
| 3etc_A | 580 | 2.1 A Structure Of Acyl-Adenylate Synthetase From M | 4e-04 | ||
| 3kxw_A | 590 | The Crystal Structure Of Fatty Acid Amp Ligase From | 5e-04 | ||
| 3e7w_A | 511 | Crystal Structure Of Dlta: Implications For The Rea | 6e-04 | ||
| 1amu_A | 563 | Phenylalanine Activating Domain Of Gramicidin Synth | 7e-04 |
| >pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548 | Back alignment and structure |
|
| >pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548 | Back alignment and structure |
|
| >pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505 | Back alignment and structure |
|
| >pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548 | Back alignment and structure |
|
| >pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979 | Back alignment and structure |
|
| >pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555 | Back alignment and structure |
|
| >pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551 | Back alignment and structure |
|
| >pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536 | Back alignment and structure |
|
| >pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555 | Back alignment and structure |
|
| >pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550 | Back alignment and structure |
|
| >pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582 | Back alignment and structure |
|
| >pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503 | Back alignment and structure |
|
| >pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503 | Back alignment and structure |
|
| >pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503 | Back alignment and structure |
|
| >pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506 | Back alignment and structure |
|
| >pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541 | Back alignment and structure |
|
| >pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A Nonribosomal Peptide Synthetase Termination Module Length = 1304 | Back alignment and structure |
|
| >pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517 | Back alignment and structure |
|
| >pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase From Staphylococcus Aureus Subsp. Aureus Mu50 Length = 501 | Back alignment and structure |
|
| >pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396 | Back alignment and structure |
|
| >pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase (Fadd1) From Archaeoglobus Fulgidus Length = 549 | Back alignment and structure |
|
| >pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With D-Alanine Adenylate Length = 512 | Back alignment and structure |
|
| >pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And Magnesium Length = 512 | Back alignment and structure |
|
| >pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1 With Atp From Streptomyces Length = 544 | Back alignment and structure |
|
| >pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From Methanosarcina Acetivorans Containing A Link Between Lys256 And Cys298 Length = 580 | Back alignment and structure |
|
| >pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From Legionella Pneumophila Length = 590 | Back alignment and structure |
|
| >pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps) Adenylation Domains Length = 511 | Back alignment and structure |
|
| >pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1 In A Complex With Amp And Phenylalanine Length = 563 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548 | Back alignment and structure |
|---|
Score = 202 bits (516), Expect = 1e-58
Identities = 105/490 (21%), Positives = 178/490 (36%), Gaps = 91/490 (18%)
Query: 26 VYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVY 85
+ PI S R +ER + + G +Y E
Sbjct: 10 IVVGPKP----FYPIEEG-SAGTQLRKYMERYAKLGAIA---FTNAVTGVDY--SYAEYL 59
Query: 86 DLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFI 145
+ + A++ G+ G+ + NC E+ I + A +G+ P + +
Sbjct: 60 EKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHS 119
Query: 146 ICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEF 205
+ S +I F +K + +++ T ++ SKV D F
Sbjct: 120 LGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYR----------GYQCLDTF 169
Query: 206 LQLGENKQFDL------PVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLE 259
++ F V +K + IM +SG+TG PKGV +++ENIVT + + +
Sbjct: 170 IKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIY 229
Query: 260 SVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAI----GFWRGDVKLLLEDIGELKP 315
+++ ++ +P H F ++ G + F D + L+ + + K
Sbjct: 230 G--NQVSPGTAVLTVVPFHHGFGMFTTLGYLICGFRVVMLTKF---DEETFLKTLQDYKC 284
Query: 316 TIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIV 375
T VP +++ LN K + +K
Sbjct: 285 TSVILVP----TLFAILN-----------------------------KS----ELLNK-- 305
Query: 376 FDKVKQSFGGRVRLILSGAAPLTPHV-ETFLRVVACAHVLQGYGLTETCAGTFVSLPNEM 434
+D + I SG APL+ V E R V QGYGLTET + ++ P
Sbjct: 306 YDL------SNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIIT-PEGD 358
Query: 435 SMIGTVGPPVPNVD---VCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEV 491
G G VP + L++ + + RGEVCVKG + GY + TKE+
Sbjct: 359 DKPGASGKVVPLFKAKVIDLDTKKSLGPNR-----RGEVCVKGPMLMKGYVNNPEATKEL 413
Query: 492 M-VDGWFHTG 500
+ +GW HTG
Sbjct: 414 IDEEGWLHTG 423
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549 | Back alignment and structure |
|---|
Score = 200 bits (512), Expect = 4e-58
Identities = 92/498 (18%), Positives = 171/498 (34%), Gaps = 105/498 (21%)
Query: 26 VYRSLFAKDGFPA-PIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEV 84
Y+ GFP+ P + S D A E+ + E + E+
Sbjct: 6 KYKI-----GFPSLYYPKI-SLADRIDAAAEKFGEKTAIISAEPKFPSEFPESM-NFLEI 58
Query: 85 YDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEF 144
++ K+ + I GV + G+ N ++++ + A + VP+ + +E
Sbjct: 59 CEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVMTIYALWRVAATPVPINPMYKSFELEH 118
Query: 145 IICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDE 204
I+ S + V KT ++ + G V S E
Sbjct: 119 ILNDSEATTLVVHSMLYENFKPVLEKT--GVERVFVV--------------GGEVNSLSE 162
Query: 205 FLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEK 264
+ G ++ V + D+ I YT GTTG PKGVM+++ N+ +
Sbjct: 163 VMDSGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATG----- 217
Query: 265 LTSEDVYVSYLPLAHIFDRAIEEVFISNGAAI----GFWRGDVKLLLEDIGELKPTIFCA 320
L+ D V +P+ H + + + ++ G F + ++L E+I + K T A
Sbjct: 218 LSHMDTIVGCMPMFHSAEFGLVNLMVTVGNEYVVMGMF---NQEMLAENIEKYKGTFSWA 274
Query: 321 VPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVK 380
VP + L + +
Sbjct: 275 VP----PALNVL-------------------------VNTLE------SSNKTYDWS--- 296
Query: 381 QSFGGRVRLILSGAAPLTPHV-ETFLRVVAC------AHVLQGYGLTETCAGTFVSLPNE 433
+++ +GA P+ P + E L++ A Q +G+TE C + P
Sbjct: 297 -----YLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLR 351
Query: 434 MSMIGTVGPPVPNVDVCL------ESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDL 487
+ T G P+ ++++ + + E GE+ ++G +F GY+KRE
Sbjct: 352 LDKSTTQGVPMSDIELKVISLEDGRELGVGE--------SGEIVIRGPNIFKGYWKREKE 403
Query: 488 TKEVMV-----DGWFHTG 500
+E +F TG
Sbjct: 404 NQECWWYDEKGRKFFRTG 421
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536 | Back alignment and structure |
|---|
Score = 199 bits (508), Expect = 1e-57
Identities = 95/489 (19%), Positives = 169/489 (34%), Gaps = 94/489 (19%)
Query: 26 VYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVY 85
++RS IP + + + L ++G G TY +V
Sbjct: 8 IFRSKLP----DIYIPKNLPLHSYVLENLSNHSSKPCL-----INGANGDVY--TYADVE 56
Query: 86 DLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFI 145
+V + + G+++ ++ + PE+++ + G +
Sbjct: 57 LTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKH 116
Query: 146 ICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEF 205
S + + ++ ++ +K + S + E
Sbjct: 117 AKASRAKLLITQACYYEKVKDFARES--DVKVMCVDSAPDG------------CLHFSEL 162
Query: 206 LQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKL 265
Q EN + +D+ + Y+SGTTG PKGVM++++ ++T +A ++ N
Sbjct: 163 TQADEN-EAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVD-GDNPNLYF 220
Query: 266 TSEDVYVSYLPLAHIF-DRAIEEVFISNGAAI----GFWRGDVKLLLEDIGELKPTIFCA 320
SEDV + LP+ HI+ +I + GA I F ++ LL I + K +I
Sbjct: 221 HSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKF---EIGSLLGLIEKYKVSIAPV 277
Query: 321 VPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVK 380
VP + + K P DK
Sbjct: 278 VP----PVMMSIA-----------------------------KS----PDLDKHDLS--- 297
Query: 381 QSFGGRVRLILSGAAPLTPHV-ETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSM--- 436
+R+I SG APL + +T A + QGYG+TE + L
Sbjct: 298 -----SLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDI 352
Query: 437 -IGTVGPPVPNVD---VCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM 492
G G V N + V E+ + + GE+C++G + GY + T +
Sbjct: 353 KPGACGTVVRNAEMKIVDPETGASLPRNQ-----PGEICIRGDQIMKGYLNDPEATSRTI 407
Query: 493 -VDGWFHTG 500
+GW HTG
Sbjct: 408 DKEGWLHTG 416
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509 | Back alignment and structure |
|---|
Score = 196 bits (502), Expect = 5e-57
Identities = 84/466 (18%), Positives = 145/466 (31%), Gaps = 99/466 (21%)
Query: 48 DVFRMAVERNPNNRML--GQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGK 105
DV+R P+ + T+++ ++ + + GV +
Sbjct: 10 DVYRRNAALFPDRTAFMVDGVRL-----------THRDYLARAERLASGLLRDGVHTGDR 58
Query: 106 CGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEML 165
I NC E I + A +G +P+ L A + F++ S+ +
Sbjct: 59 VAILSQNCSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVA 118
Query: 166 KTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDIC 225
P +K + G + F L + F P D
Sbjct: 119 GVLPSLG-GVKKAYAI--------------GDGSGPFAPFKDLASDTPFSAPEFGAADGF 163
Query: 226 TIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAI 285
I++T+ G P+G ++S N++ + + LT DV + LPL H+ +
Sbjct: 164 VIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWR-----LTEADVNLGMLPLFHVTGLGL 218
Query: 286 EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKK 344
G A D DI K T+ +L I L+Q
Sbjct: 219 MLTLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNI---LDQ---------- 265
Query: 345 TLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETF 404
A + +L+ + P T +E F
Sbjct: 266 -----AAPAQLASLR-----------------------------AVTGLDTPET--IERF 289
Query: 405 LRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCL-----ESVPEMEY 459
A +G +ET + + + + G P+ V + +P E
Sbjct: 290 EATCPNATFWATFGQSETSGLSTFAPYRD--RPKSAGRPLFWRTVAVVDAEDRPLPPGE- 346
Query: 460 DALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG-MGVW 504
GE+ ++G TVF GY+ T+ +GW HTG MG +
Sbjct: 347 -------VGEIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDMGRF 385
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550 | Back alignment and structure |
|---|
Score = 196 bits (500), Expect = 2e-56
Identities = 93/490 (18%), Positives = 174/490 (35%), Gaps = 90/490 (18%)
Query: 26 VYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVY 85
+ + P+ + + A++R G D + TY E +
Sbjct: 7 IKKGPAP----FYPLEDG-TAGEQLHKAMKRYALVP--GTIAFTDAHIEVNI--TYAEYF 57
Query: 86 DLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFI 145
++ +++ A++ G+ + + N ++ + + +G+ P D +
Sbjct: 58 EMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNS 117
Query: 146 ICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEF 205
+ S ++ FV +K + ++L K K I+ SK + S F
Sbjct: 118 MNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQ----------GFQSMYTF 167
Query: 206 LQLGENKQFD------LPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLE 259
+ F+ + I IM +SG+TG PKGV + + + + +
Sbjct: 168 VTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIF 227
Query: 260 SVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAI----GFWRGDVKLLLEDIGELKP 315
++ + +S +P H F ++ G + F + +L L + + K
Sbjct: 228 G--NQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRF---EEELFLRSLQDYKI 282
Query: 316 TIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIV 375
VP ++S + S + DK
Sbjct: 283 QSALLVPT----LFSFFAK---------------------------------STLIDK-- 303
Query: 376 FDKVKQSFGGRVRLILSGAAPLTPHV-ETFLRVVACAHVLQGYGLTETCAGTFVSLPNEM 434
+D + I SG APL+ V E + + QGYGLTET + ++ P
Sbjct: 304 YDL------SNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILIT-PEGD 356
Query: 435 SMIGTVGPPVPNVD---VCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEV 491
G VG VP + V L++ + + RGE+CV+G + SGY + T +
Sbjct: 357 DKPGAVGKVVPFFEAKVVDLDTGKTLGVNQ-----RGELCVRGPMIMSGYVNNPEATNAL 411
Query: 492 MV-DGWFHTG 500
+ DGW H+G
Sbjct: 412 IDKDGWLHSG 421
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517 | Back alignment and structure |
|---|
Score = 195 bits (497), Expect = 3e-56
Identities = 88/472 (18%), Positives = 158/472 (33%), Gaps = 96/472 (20%)
Query: 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEE 102
M++ + R +P + V+ + TY ++ L + + + G+ +
Sbjct: 15 MKNIGWMLRQRATVSPRLQAY-----VEPSTDVRM--TYAQMNALANRCADVLTALGIAK 67
Query: 103 RGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIP 162
+ + N E+ LG VP+ L A V FI+ SG + P
Sbjct: 68 GDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAP 127
Query: 163 EMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKN 222
++ + T+ + S E L+ + + +
Sbjct: 128 -VIDAIRAQADPPGTVTD---------------WIGADSLAERLRSAAADEPAVECGG-D 170
Query: 223 DICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282
D IMYTSGTTG PKGV+ ++E++ + + + D + LP+ H+
Sbjct: 171 DNLFIMYTSGTTGHPKGVVHTHESVHS-----AASSWASTIDVRYRDRLLLPLPMFHVAA 225
Query: 283 RAIEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGL 341
G + D + I E + I AVP +L+ +
Sbjct: 226 LTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMR------------ 273
Query: 342 LKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHV 401
P ++ R ++G AP+ +
Sbjct: 274 -------------------------QVPEFAELDAPDF--------RYFITGGAPMPEAL 300
Query: 402 ETFLRVVA--CAHVLQGYGLTETCAGTFVSLPNE-MSMIGTVGPPVPNVDVCL-----ES 453
+++ A V+QGY LTE+C G + L + + G+ G DV +
Sbjct: 301 ---IKIYAAKNIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGVI 357
Query: 454 VPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG-MGVW 504
E GEV +K + Y+ R + T++ +GWF TG +G
Sbjct: 358 REHGE---------GEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEI 400
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501 | Back alignment and structure |
|---|
Score = 192 bits (490), Expect = 2e-55
Identities = 78/459 (16%), Positives = 147/459 (32%), Gaps = 89/459 (19%)
Query: 48 DVFRMAVERNPNNRML--GQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERG- 104
++N ++ + GQ TY+ +Y + ++ +
Sbjct: 5 FWLYKQAQQNGHHIAITDGQESY-----------TYQNLYCEASLLAKRLK----AYQQS 49
Query: 105 KCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEM 164
+ G+Y N + II + AC + + L + + V + F +
Sbjct: 50 RVGLYIDNSIQSIILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCT----LPL 105
Query: 165 LKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDI 224
+ + + + S + + +DI
Sbjct: 106 ELRGFQIVSLDDIEFAGRDITTNGLLDNTMGIQYDTSNETVVPKESPSNILNTSFNLDDI 165
Query: 225 CTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRA 284
+IM+TSGTTG K V + N + + + ++S LP+ HI +
Sbjct: 166 ASIMFTSGTTGPQKAVPQTFRNHYA-----SAIGCKESLGFDRDTNWLSVLPIYHISGLS 220
Query: 285 IEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLK 343
+ + G + + + +L I + T VP+ + L Q
Sbjct: 221 VLLRAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQT----LNWLMQ--------- 267
Query: 344 KTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHV-E 402
E ++ IL G A L+ + E
Sbjct: 268 ------------------QGLHEPY-----------------NLQKILLGGAKLSATMIE 292
Query: 403 TFLRVVACAHVLQGYGLTETCAGTFVSLPNE-MSMIGTVGPPVPNVDVCLESVPEMEYDA 461
T L+ + +G+TETC+ + P + TVG P NVDV +++ +
Sbjct: 293 TALQ--YNLPIYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPNKEG--- 347
Query: 462 LSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG 500
GE+ +KG+ V +GY D +G+F+TG
Sbjct: 348 -----HGELMIKGANVMNGYLYPTD-LTGTFENGYFNTG 380
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979 | Back alignment and structure |
|---|
Score = 194 bits (496), Expect = 5e-54
Identities = 103/491 (20%), Positives = 171/491 (34%), Gaps = 90/491 (18%)
Query: 26 VYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVY 85
++RS IP S D + L ++G G TY +V+
Sbjct: 47 IFRSKLP----DIYIPNHLSLHDYIFQNISEFATKPCL-----INGPTGHVY--TYSDVH 95
Query: 86 DLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFI 145
+ ++ GV + + NCPE+++ A + G +
Sbjct: 96 VISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQ 155
Query: 146 ICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEF 205
S + E + + ++ + + E + E
Sbjct: 156 AKASNTKLIITEARYVDKIKPLQNDD--GVVIVCIDDNESVPIPE-------GCLRFTEL 206
Query: 206 LQLGENKQFDLPVKK--KNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNE 263
Q + + +D+ + Y+SGTTG PKGVM++++ +VT +A E+ N
Sbjct: 207 TQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVD-GENPNL 265
Query: 264 KLTSEDVYVSYLPLAHIFD-RAIEEVFISNGAAI----GFWRGDVKLLLEDIGELKPTIF 318
S+DV + LP+ HI+ +I + GAAI F ++ LLLE I K T+
Sbjct: 266 YFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKF---EINLLLELIQRCKVTVA 322
Query: 319 CAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDK 378
VP I + K +K +D
Sbjct: 323 PMVP----PIVLAIA-----------------------------KS----SETEK--YDL 343
Query: 379 VKQSFGGRVRLILSGAAPLTPHV-ETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSM- 436
+R++ SGAAPL + + A + QGYG+TE +SL
Sbjct: 344 ------SSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPF 397
Query: 437 ---IGTVGPPVPNVD---VCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKE 490
G G V N + V ++ + + GE+C++G + GY T E
Sbjct: 398 PVKSGACGTVVRNAEMKIVDPDTGDSLSRNQ-----PGEICIRGHQIMKGYLNNPAATAE 452
Query: 491 VM-VDGWFHTG 500
+ DGW HTG
Sbjct: 453 TIDKDGWLHTG 463
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503 | Back alignment and structure |
|---|
Score = 185 bits (471), Expect = 9e-53
Identities = 89/433 (20%), Positives = 153/433 (35%), Gaps = 93/433 (21%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGA 139
+Y E+ +V N + G++ + E ++ A G +PL
Sbjct: 30 SYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLNTAYTL 89
Query: 140 GAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAV 199
+++ I + I + K + K ++T+
Sbjct: 90 HELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLG----------------PDGR 133
Query: 200 YSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLE 259
S + F + +D+ I+YTSGTTG KG M+S++N+ + L++
Sbjct: 134 GSLTDAAAGASE-AFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLA---SNSLTLVD 189
Query: 260 SVNEKLTSEDVYVSYLPLAHIFDRAIEEVF---ISNGAAIGFWRG-DVKLLLEDIGELKP 315
+ T +DV + LP+ H + + ++ F D +L+ + +
Sbjct: 190 YW--RFTPDDVLIHALPIYHTH--GLFVASNVTLFARGSMIFLPKFDPDKILDLMA--RA 243
Query: 316 TIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIV 375
T+ VP Y+ L Q SP K
Sbjct: 244 TVLMGVPT----FYTRLLQ---------------------------------SPRLTKET 266
Query: 376 FDKVKQSFGGRVRLILSGAAPLTPHV-ETFLRVVACAHVLQGYGLTETCAGTFVSLPNEM 434
G +RL +SG+APL + A VL+ YG+TET T + +
Sbjct: 267 T--------GHMRLFISGSAPLLADTHREWSAKTGHA-VLERYGMTETNMNTS-NPYDGD 316
Query: 435 SMIGTVGPPVPNVDVCL------ESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLT 488
+ G VGP +P V + + +P + G + VKG VF GY++ + T
Sbjct: 317 RVPGAVGPALPGVSARVTDPETGKELPRGD--------IGMIEVKGPNVFKGYWRMPEKT 368
Query: 489 KEVMV-DGWFHTG 500
K DG+F TG
Sbjct: 369 KSEFRDDGFFITG 381
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504 | Back alignment and structure |
|---|
Score = 181 bits (463), Expect = 1e-51
Identities = 75/470 (15%), Positives = 143/470 (30%), Gaps = 98/470 (20%)
Query: 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEE 102
M++ ++ R A R P++ L G + T+ E+ V V + G+
Sbjct: 1 MQTVNEMLRRAATRAPDHCAL-----AVPARGLRL--THAELRARVEAVAARLHADGLRP 53
Query: 103 RGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIP 162
+ + + N + +I + A + LG L L + + +I ++ A +
Sbjct: 54 QQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVG--R 111
Query: 163 EMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKN 222
++ ++ + I + + P ++
Sbjct: 112 QVADAIFQSGSGARIIF------------------LGDLVRDGEPYSYGPPIEDPQREPA 153
Query: 223 DICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282
I YTSGTTG PK ++ + + + V + +V + +PL H+
Sbjct: 154 QPAFIFYTSGTTGLPKAAIIPQRAAESRVLFM---STQVGLRHGRHNVVLGLMPLYHVVG 210
Query: 283 -RAIEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGG 340
A+ ++ L+ + + + T A P
Sbjct: 211 FFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATP------------------ 252
Query: 341 LLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPH 400
T + + A+ +R + A +
Sbjct: 253 ----THLDA---------------LAAAAAHAGSSLK------LDSLRHVTFAGATMPDA 287
Query: 401 V-ETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCL-------- 451
V ET + + + YG TE ++ P GT P +V +
Sbjct: 288 VLETVHQHLPGE-KVNIYGTTEAMNSLYMRQPK----TGTEMAPGFFSEVRIVRIGGGVD 342
Query: 452 ESVPEMEYDALSSTPRGEVCVKGS-TVFSGYYKREDLTKEVMVDGWFHTG 500
E V E GE+ V S + F GY + T E + DGW+ T
Sbjct: 343 EIVANGE--------EGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTS 384
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529 | Back alignment and structure |
|---|
Score = 181 bits (462), Expect = 3e-51
Identities = 74/432 (17%), Positives = 135/432 (31%), Gaps = 81/432 (18%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGA 139
TY E+ + + +A+RT GV + + ++ + G+ V L
Sbjct: 50 TYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLTP 109
Query: 140 GAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAV 199
+++ HS + + + EH + S+ + +
Sbjct: 110 ADYVYMLTHSHARAVIASGALVQNVTQALESA-EHDGCQLIVSQPRESEPR-------LA 161
Query: 200 YSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIV--TFIAGVKCL 257
++E + +DI +Y+SG+TG PKG + ++ N+ + L
Sbjct: 162 PLFEELID-AAAPAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPIL 220
Query: 258 LESVNEKLTSEDVYVSYLPLAHIFDRAIEEVF-ISNGAAIGFWRG--DVKLLLEDIGELK 314
+ DV S L + F +S GA + + E +
Sbjct: 221 ------GIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHR 274
Query: 315 PTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKI 374
PT+F VP TL+
Sbjct: 275 PTVFYGVP----------------------TLYANMLVS--------------------- 291
Query: 375 VFDKVKQSFGGRVRLILSGAAPLTPHV-ETFLRVVACAHVLQGYGLTETCAGTFVSLPNE 433
+ +R+ S L + E F C +L G G TE F+S
Sbjct: 292 --PNLPARADVAIRICTSAGEALPREIGERFTAHFGC-EILDGIGSTEMLH-IFLSNRAG 347
Query: 434 MSMIGTVGPPVPNVDVCL-----ESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLT 488
GT G PVP ++ L +VP+ E G++ +KG + Y+ + +
Sbjct: 348 AVEYGTTGRPVPGYEIELRDEAGHAVPDGE--------VGDLYIKGPSAAVMYWNNREKS 399
Query: 489 KEVMVDGWFHTG 500
+ + W +G
Sbjct: 400 RATFLGEWIRSG 411
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505 | Back alignment and structure |
|---|
Score = 176 bits (448), Expect = 2e-49
Identities = 90/432 (20%), Positives = 137/432 (31%), Gaps = 105/432 (24%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGA 139
TY E+ I G+ ++ E + + A G+ VPL G
Sbjct: 50 TYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVAVVAALLAGVAAVPLNPKSGD 104
Query: 140 GAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAV 199
+ I+ S S+ P+ L
Sbjct: 105 KELAHILSDSAPSLVLAP----------------------------PDAELPPALGALER 136
Query: 200 YSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLE 259
D + D ++YTSGTTG PKG ++ + + L +
Sbjct: 137 VDVD----VRARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALA---TTLDALAD 189
Query: 260 SVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRG---------DVKLLLEDI 310
+ + T EDV V LPL H+ + G RG + ++
Sbjct: 190 AW--QWTGEDVLVQGLPLFHVHG-------LVLGILGPLRRGGSVRHLGRFSTEGAAREL 240
Query: 311 GELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPI 370
+ T+ VP +Y + + + + L K L
Sbjct: 241 ND-GATMLFGVPT----MYHRIAETLPADPELAKAL------------------------ 271
Query: 371 ADKIVFDKVKQSFGGRVRLILSGAAPLTPHV-ETFLRVVACAHVLQGYGLTETCAGTFVS 429
RL++SG+A L H E V++ YG+TET T V
Sbjct: 272 --------------AGARLLVSGSAALPVHDHERIAAATGRR-VIERYGMTETLMNTSVR 316
Query: 430 LPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTK 489
E GTVG P+P V++ L AL GE+ V+G +F+ Y R D T
Sbjct: 317 ADGE-PRAGTVGVPLPGVELRLVEEDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATA 375
Query: 490 EVMV-DGWFHTG 500
DG+F TG
Sbjct: 376 AAFTEDGFFRTG 387
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544 | Back alignment and structure |
|---|
Score = 138 bits (349), Expect = 2e-35
Identities = 63/485 (12%), Positives = 141/485 (29%), Gaps = 127/485 (26%)
Query: 47 WDVFRMAVERNPNNRML--GQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERG 104
+ + V+ +P++ + G+R++ +Y E+ L + + G+ +
Sbjct: 33 TRILTVGVQSHPHSLAIICGERQL-----------SYIELDRLSTNLATRLAEKGLGKGD 81
Query: 105 KCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEK----K 160
+ N E+ I A G+ + + + I + +
Sbjct: 82 TALVQLPNVAEFYIVFFALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFS 141
Query: 161 IPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKK 220
+ + + + I+ + + + ++++ D
Sbjct: 142 NNQFIDSLHDVNLSPEIILMLNHQATD------------FGLLDWIETPAETFVDFSSTP 189
Query: 221 KNDICTIMYTSGTTGDPKGVMVSNENIV--TFIAGVKCLLESVNEKLTSEDVYVSYLPLA 278
+++ + G+TG PK + ++ + + C L S + LP
Sbjct: 190 ADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEIC-------GLNSNTRLLCALPAP 242
Query: 279 HIFDRAIEEVFISNGAAIGFWRG---------DVKLLLEDIGELKPTIFCAVPRVLDRIY 329
H F + S GA G + I + + VP
Sbjct: 243 HNF------MLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVP------- 289
Query: 330 SGLNQKISSGGLLKKTLFNI------AYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSF 383
+ + Y + +LK V + + + +V +
Sbjct: 290 ---------------SAVIMWLEKAAQYKDQIQSLKLL--QVGGASFPES-LARQVPEVL 331
Query: 384 GGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTET-CAGTFVSLPNEMSMIGTVGP 442
+ + Q +G+ E T + +E + T G
Sbjct: 332 NCK--------------------------LQQVFGMAEGLVNYTRLDDSDEQ-IFTTQGR 364
Query: 443 PVPN------VDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDG 495
P+ + VD VPE E G + +G F GYY+ + +V D
Sbjct: 365 PISSDDEIKIVDEQYREVPEGE--------IGMLATRGPYTFCGYYQSPEHNSQVFDEDN 416
Query: 496 WFHTG 500
++++G
Sbjct: 417 YYYSG 421
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617 | Back alignment and structure |
|---|
Score = 136 bits (345), Expect = 1e-34
Identities = 63/440 (14%), Positives = 130/440 (29%), Gaps = 94/440 (21%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGA 139
+Y+E+ + ++R G++ + N E I A LG+ V +
Sbjct: 52 SYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVLALFSHQR 111
Query: 140 GAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAV 199
+ ++ + + + +F R
Sbjct: 112 SELNAYASQIEPALLIADRQH---------ALFSGDDFLNTFVTEHSSIRVVQLLNDSGE 162
Query: 200 YSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIV--TFIAGVKCL 257
++ + + F +++ + GTTG PK + ++ + + C
Sbjct: 163 HNLQDAINHPAE-DFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEIC- 220
Query: 258 LESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRG---------DVKLLLE 308
+ T + Y+ +P AH + S G+ F G L
Sbjct: 221 ------QFTQQTRYLCAIPAAHNY------AMSSPGSLGVFLAGGTVVLAADPSATLCFP 268
Query: 309 DIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEAS 368
I + + + VP S Q + G + +LK V +
Sbjct: 269 LIEKHQVNVTALVP----PAVSLWLQALIEGE----------SRAQLASLKLL--QVGGA 312
Query: 369 PIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTET-CAGTF 427
++ + ++ G + + Q +G+ E T
Sbjct: 313 RLSAT-LAARIPAEIGCQ--------------------------LQQVFGMAEGLVNYTR 345
Query: 428 VSLPNEMSMIGTVGPPV-PNVDVCL-----ESVPEMEYDALSSTPRGEVCVKGSTVFSGY 481
+ E +I T G P+ P+ +V + +P+ E G + +G F GY
Sbjct: 346 LDDSAEK-IIHTQGYPMCPDDEVWVADAEGNPLPQGE--------VGRLMTRGPYTFRGY 396
Query: 482 YKREDLTKEVM-VDGWFHTG 500
YK +G++ +G
Sbjct: 397 YKSPQHNASAFDANGFYCSG 416
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539 | Back alignment and structure |
|---|
Score = 129 bits (326), Expect = 2e-32
Identities = 73/484 (15%), Positives = 147/484 (30%), Gaps = 129/484 (26%)
Query: 47 WDVFRMAVERNPNNRML--GQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERG 104
D+ R + + + G +Y+E+ ++ + G++++
Sbjct: 28 GDLLRDRAAKYGDRIAITCGNTHW-----------SYRELDTRADRLAAGFQKLGIQQKD 76
Query: 105 KCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEK----K 160
+ + N E+ + A LG V + + + + + + + +
Sbjct: 77 RVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFD 136
Query: 161 IPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGE--NKQFDLPV 218
+ + LK I+ + +EFL L + + LP
Sbjct: 137 YRSLARQVQSKLPTLKNIIVAGE------------------AEEFLPLEDLHTEPVKLPE 178
Query: 219 KKKNDICTIMYTSGTTGDPKGVMVSNENIV--TFIAGVKCLLESVNEKLTSEDVYVSYLP 276
K +D+ + + G+TG K + ++++ + + C L VY++ LP
Sbjct: 179 VKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-------WLDHSTVYLAALP 231
Query: 277 LAHIFDRAIEEVF--ISNGAAI----GFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYS 330
+AH + + V + G + I K TI VP
Sbjct: 232 MAHNYPLSSPGVLGVLYAGGRVVLSPSP---SPDDAFPLIEREKVTITALVP-------- 280
Query: 331 GLNQKISSGGLLKKTLFNI------AYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFG 384
L + + +L+ V + + + +VK FG
Sbjct: 281 --------------PLAMVWMDAASSRRDDLSSLQVL--QVGGAKFSAE-AARRVKAVFG 323
Query: 385 GRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAG-TFVSLPNEMSMIGTVGPP 443
+ Q +G+ E T + P E+ + T G P
Sbjct: 324 CTL--------------------------QQVFGMAEGLVNYTRLDDPEEII-VNTQGKP 356
Query: 444 V-PNVDVCL-----ESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV-DGW 496
+ P + + V E G + +G GYYK E+ DG+
Sbjct: 357 MSPYDESRVWDDHDRDVKPGE--------TGHLLTRGPYTIRGYYKAEEHNAASFTEDGF 408
Query: 497 FHTG 500
+ TG
Sbjct: 409 YRTG 412
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570 | Back alignment and structure |
|---|
Score = 123 bits (311), Expect = 2e-30
Identities = 66/463 (14%), Positives = 131/463 (28%), Gaps = 124/463 (26%)
Query: 70 DGKAGKYVWKTYKEVYDLVIKVVNAIR-TCGVEERGKCGIYGVNCPEWIIGMEACNALGL 128
GK + ++E+ + + N + CG++ + + PEW + + C GL
Sbjct: 68 KGKELMW---NFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGL 124
Query: 129 HCVPLYDTLGAGAVEFIICHSGVSIAFVEE---KKIPEMLKTFPKTTEHLKTIVSFSKVK 185
+P + + + + + S + +++ + P L+ + S+
Sbjct: 125 IFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECP----SLRIKLLVSEKS 180
Query: 186 PEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNE 245
+ ++ + L + + I +TSGT+G PK S
Sbjct: 181 CD----------GWLNFKKLLN-EASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYS 229
Query: 246 NIVTFIAGVKCLLESVNEKLTSEDV--------------YVSYLPLAHIFDRAIEEVFIS 291
++ L + D+ P A
Sbjct: 230 SLGLKAKMDAGWT-----GLQASDIMWTISDTGWILNILCSLMEPWAL------------ 272
Query: 292 NGAAIGFWRG---DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFN 348
GA D ++L+ + P V R +L + +
Sbjct: 273 -GACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVY-R-------------MLLQQDLS 317
Query: 349 IAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHV-ETFLRV 407
SYKF +L + ++ L P E +
Sbjct: 318 ---SYKFPHL-----------------------------QNCVTVGESLLPETLENWRAQ 345
Query: 408 VACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCL-----ESVPEMEYDAL 462
+ + YG TET T + G +G DV + +P
Sbjct: 346 TGLD-IRESYGQTETGL-TCMVSKTMKIKPGYMGTAASCYDVQIIDDKGNVLPPGT---- 399
Query: 463 SSTPRGEVCVKGSTV-----FSGYYKREDLTKEVMVDGWFHTG 500
G++ ++ + FSGY D T + ++ G
Sbjct: 400 ----EGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLLG 438
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541 | Back alignment and structure |
|---|
Score = 120 bits (303), Expect = 2e-29
Identities = 104/489 (21%), Positives = 171/489 (34%), Gaps = 146/489 (29%)
Query: 64 GQREIV-DGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122
G++E+V G+ TY EVY +++ +R GV + G N +EA
Sbjct: 32 GRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRH---LEA 88
Query: 123 CNALGLHCVPLYDTLGAGAV-------------EFIICHSGVSIAFVEEKKIPEMLKTFP 169
A VP G GAV +I+ H+ + + +P +++
Sbjct: 89 YFA-----VP-----GMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLP-LVEAIR 137
Query: 170 KTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMY 229
+ ++ V + PE +++E L E +P + C + Y
Sbjct: 138 GELKTVQHFVVMDEKAPE----------GYLAYEEALG-EEADPVRVP---ERAACGMAY 183
Query: 230 TSGTTGDPKGVMVSNENIV--TFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEE 287
T+GTTG PKGV+ S+ +V + A L++ L+ +DV + +P+ H+
Sbjct: 184 TTGTTGLPKGVVYSHRALVLHSLAA---SLVDGTA--LSEKDVVLPVVPMFHV------- 231
Query: 288 VFISNG-----AAIGFWRG----------DVKLLLEDIGELKPTIFCAVPRVLDRIYSGL 332
N AA G D L+E T VP V
Sbjct: 232 ----NAWCLPYAA--TLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVW------- 278
Query: 333 NQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILS 392
L ++E++ RL++
Sbjct: 279 ------LALAD--------------------YLESTG-----------HRLKTLRRLVVG 301
Query: 393 GAAPLTPHVETFLRVVACAHVLQGYGLTETCA-GTFVSLPNEM---------SMIGTVGP 442
G+A + F R V QGYGLTET + + + ++ G
Sbjct: 302 GSAAPRSLIARFER--MGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGL 359
Query: 443 PVPNVDVCLESVPEMEYDALSSTPR-----GEVCVKGSTVFSGYYKREDLTKEVM-VDGW 496
P+P V + + E P+ GEV +KG + GYY E+ T+ + DG+
Sbjct: 360 PIPLVRLRVAD-EEGR-----PVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGF 413
Query: 497 FHTG-MGVW 504
F TG + VW
Sbjct: 414 FRTGDIAVW 422
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 4e-25
Identities = 85/470 (18%), Positives = 143/470 (30%), Gaps = 132/470 (28%)
Query: 70 DGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERG-KCGIYGVNCPEWIIGMEACNALGL 128
G + T+K++ K N G+ +G + + ++ M + LG
Sbjct: 81 YGNEKIF---TFKDLKYYSDKAANFFVKHGIG-KGDYVMLTLKSRYDFWYCMLGLHKLGA 136
Query: 129 HCVPLYDTLGAGAVEFIICHSGVS-IAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPE 187
VP L + + I +G+ I + E +PE + + +
Sbjct: 137 IAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDVL 196
Query: 188 QREEIEKYGLAVYSWDEFLQLGENKQFDLPVK----KKNDICTIMYTSGTTGDPKGVMVS 243
+ + + L+ + F+ P K DIC + ++SGT G PK V
Sbjct: 197 EGW---------IDFRKELE-ESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHD 246
Query: 244 NENIVTFIAGVKCLLESVNEKLTSEDVY-----------VSYL---PLAHIFDRAIEEVF 289
N + I K + + ++ V
Sbjct: 247 NTYPLGHILTAKYWQN-----VEDDGLHYTVADSGWGKCVWGKLYGQWI----------- 290
Query: 290 ISNGAAIGFWRG---DVKLLLEDIGELKPTIFCAVP---RVLDRIYSGLNQKISSGGLLK 343
G A+ + + K +LE + T FCA P R L I L+
Sbjct: 291 --AGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFL--IKEDLSH--------- 337
Query: 344 KTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHV-E 402
Y F L + + PL P V
Sbjct: 338 ---------YNFSTL-----------------------------KYAVVAGEPLNPEVFN 359
Query: 403 TFLRVVACAHVLQGYGLTETCA--GTFVSLPNEMSMIGTVGPPVPNVDVCL-----ESVP 455
FL +++G+G TET TF + + G++G P P + L
Sbjct: 360 RFLEFTGIK-LMEGFGQTETVVTIATFPWMEPK---PGSIGKPTPGYKIELMDRDGRLCE 415
Query: 456 EMEYDALSSTPRGEVCVKGST-----VFSGYYKREDLTKEVMVDGWFHTG 500
E GE+ + +F Y K + T+E DG++HTG
Sbjct: 416 VGE--------EGEIVINTMEGKPVGLFVHYGKDPERTEETWHDGYYHTG 457
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480 | Back alignment and structure |
|---|
Score = 73.6 bits (181), Expect = 4e-14
Identities = 36/239 (15%), Positives = 71/239 (29%), Gaps = 28/239 (11%)
Query: 48 DVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERG-KC 106
R P++ + G + T+ ++Y + V + CG G +
Sbjct: 28 AALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCG--STGDRV 85
Query: 107 GIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVE---FIICHSGVSIAFVEEKKIPE 163
I E+++ G VPL G E ++ S + +
Sbjct: 86 VISAPQGLEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDD 145
Query: 164 MLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKND 223
+++ + ++ D L L + +
Sbjct: 146 VVQHV--------------------ARRPGESPPSIIEVDL-LDLDAPNGYTFKEDEYPS 184
Query: 224 ICTIMYTSGTTGDPKGVMVSNENIVTFIAG-VKCLLESVNEKLTSEDVYVSYLPLAHIF 281
+ YTSG+T P GV++S++N+ + + VS+LP H
Sbjct: 185 TAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHDM 243
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 1e-08
Identities = 28/157 (17%), Positives = 47/157 (29%), Gaps = 43/157 (27%)
Query: 385 GRVRLILSGAAPLTPH-VETFLRVVAC----AHVLQ-GYGLTETCAGTFVSLPNEMSMIG 438
G + ILSG+ + ++ F A V++ Y L E +V+
Sbjct: 311 GNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEAT--VYVATSKPGQPPE 368
Query: 439 TV---------GPPVPNVD------VCLESVPEMEY---DALSSTPR-----GEVCVKGS 475
TV G P + D+ + GE+ V G
Sbjct: 369 TVDFDTESLSAGHAKPCAGGGATSLISYMLPRSPIVRIVDSDTCIECPDGTVGEIWVHGD 428
Query: 476 TVFSGYYKREDLTKEVMV------------DGWFHTG 500
V +GY+++ D ++ W TG
Sbjct: 429 NVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTG 465
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563 | Back alignment and structure |
|---|
Score = 72.1 bits (178), Expect = 1e-13
Identities = 61/287 (21%), Positives = 103/287 (35%), Gaps = 81/287 (28%)
Query: 227 IMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIE 286
++YTSGTTG+PKG M+ ++ I + L +T +D + ++ FD ++
Sbjct: 187 VIYTSGTTGNPKGTMLEHKGISNLKVFFENSLN-----VTEKDRIGQFASIS--FDASVW 239
Query: 287 EVF--ISNGAAIGF----WRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGG 340
E+F + GA++ D + I + + T+ P
Sbjct: 240 EMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPP------------------ 281
Query: 341 LLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPH 400
T + +++ LI +G+A
Sbjct: 282 ----TYVVHLDPERILSIQ----------------------------TLITAGSATSPSL 309
Query: 401 VETFLRVVACAHVLQGYGLTET--CAGTFVSLPNEMSMIGTVGPPVPN-----VDVCLES 453
V + V + YG TET CA T+V+ + +G P+ N VD L+
Sbjct: 310 VNKWKEKVT---YINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQL 366
Query: 454 VPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG 500
GE+C+ G + GY+KR +LT + VD F G
Sbjct: 367 KSV-------GEA-GELCIGGEGLARGYWKRPELTSQKFVDNPFVPG 405
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 3e-13
Identities = 42/235 (17%), Positives = 83/235 (35%), Gaps = 33/235 (14%)
Query: 48 DVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCG 107
DV R+ +PN + ++ + + + TY+++ + ++ G + +
Sbjct: 15 DVVRLRALHSPNKKSC---TFLNKELEETM--TYEQLDQHAKAIAATLQAEGAKPGDRVL 69
Query: 108 IYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVE---FIICHSGVSIAFVEEKKIPEM 164
+ I C G VP+Y ++ I+ +S I + I +
Sbjct: 70 LLFAPGLPLIQAFLGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKF 129
Query: 165 LKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDI 224
T + + + ++L + + K NDI
Sbjct: 130 TADELNTNPKFL-------------------KIPAIALES-IELNRSSSWQPTSIKSNDI 169
Query: 225 CTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAH 279
+ YTSG+T PKGVMVS+ N++ + + + E + S+LP H
Sbjct: 170 AFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFH-----MNDETIIFSWLPPHH 219
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 2e-07
Identities = 25/162 (15%), Positives = 42/162 (25%), Gaps = 55/162 (33%)
Query: 385 GRVRLILSGAAPLTPH-VETFLRVVAC----AHVLQ-GYGLTETCAGTFVSLPNEMSMIG 438
+GA P+ +E F + YGL E P
Sbjct: 289 SSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTL 348
Query: 439 TV--------------------------GPPVPNVDVCLESVPEMEYDALSSTPR----- 467
T+ G P+ V + D + P
Sbjct: 349 TLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQEVKII---------DPDTLIPCDFDQV 399
Query: 468 GEVCVKGSTVFSGYYKREDLTKEVMV---------DGWFHTG 500
GE+ V+ ++V GY+ + + T+ + TG
Sbjct: 400 GEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTG 441
|
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304 | Back alignment and structure |
|---|
Score = 71.1 bits (175), Expect = 4e-13
Identities = 60/281 (21%), Positives = 96/281 (34%), Gaps = 83/281 (29%)
Query: 227 IMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIE 286
IMYTSGTTG PKG + ++ NI + V + + +D ++S A FD
Sbjct: 612 IMYTSGTTGKPKGNITTHANIQGLVKHVDYM------AFSDQDTFLSVSNYA--FDAFTF 663
Query: 287 EVF--ISNGAAIGF----WRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGG 340
+ + + N A + D + L + I + + A
Sbjct: 664 DFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATT------------------ 705
Query: 341 LLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPH 400
+ F+ L +A G ++ G PH
Sbjct: 706 -----------AL-FNLL------TDAGE-----------DWMKGLRCILFGGERASVPH 736
Query: 401 VETFLRVVACAHVLQGYGLTET--CAGTFVSLPNEMSMIGTV--GPPVPN-----VDVCL 451
V LR++ ++ YG TE A T + + I ++ G P+ N ++
Sbjct: 737 VRKALRIMGPGKLINCYGPTEGTVFA-TAHVVHDLPDSISSLPIGKPISNASVYILNEQS 795
Query: 452 ESVPEMEYDALSSTP--RGEVCVKGSTVFSGYYKREDLTKE 490
+ P GE+C+ G V GY R DLTKE
Sbjct: 796 QLQP----------FGAVGELCISGMGVSKGYVNRADLTKE 826
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620 | Back alignment and structure |
|---|
Score = 70.2 bits (173), Expect = 6e-13
Identities = 55/278 (19%), Positives = 93/278 (33%), Gaps = 77/278 (27%)
Query: 227 IMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIE 286
I ++SGTTG PK + ++ I G L + ++ PL+ FD A
Sbjct: 169 INFSSGTTGRPKAIACTHAGITRLCLGQSFL------AFAPQMRFLVNSPLS--FDAATL 220
Query: 287 EVFIS--NGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKK 344
E++ + NG +L D+G L P + +++ +
Sbjct: 221 EIWGALLNGG---------CCVLNDLGPLDPGVLR---QLIGE------RGA-------- 254
Query: 345 TLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETF 404
+ S F+ L V+ P GG +L+ G PHV
Sbjct: 255 DSAWLTASL-FNTL------VDLDP-----------DCLGGLRQLLTGGDILSVPHVRRA 296
Query: 405 LRVVACAHVLQGYGLTETCAGTFVS---LPNEMSMIGTV--GPPVPN-----VDVCLESV 454
L H++ GYG TE TF + ++ + G + +D + +
Sbjct: 297 LLRHPRLHLVNGYGPTENT--TFTCCHVVTDDDLEEDDIPIGKAIAGTAVLLLDEHGQEI 354
Query: 455 PEMEYDALSSTP--RGEVCVKGSTVFSGYYKREDLTKE 490
E P GE+ G+ + GY T+
Sbjct: 355 AE---------PDRAGEIVAFGAGLAQGYRNDAARTRA 383
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521 | Back alignment and structure |
|---|
Score = 69.5 bits (171), Expect = 9e-13
Identities = 52/279 (18%), Positives = 90/279 (32%), Gaps = 72/279 (25%)
Query: 227 IMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIE 286
I++TSGTTG PKGV +S++N+++F ++E + + ++ P + FD ++
Sbjct: 150 IIFTSGTTGQPKGVQISHDNLLSFTNW---MIEDAAFDVPKQPQMLAQPPYS--FDLSVM 204
Query: 287 EVF--ISNGAAIGF----WRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGG 340
++ G + D K L I +L I+ + P S + + S
Sbjct: 205 YWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTP-------SFADMAMLSDD 257
Query: 341 LLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPH 400
+ + L G
Sbjct: 258 FCQAKM---------PALT----------------------------HFYFDGEELTVST 280
Query: 401 VETFLRVVACAHVLQGYGLTETCAG-TFVSLPNEMSMIGTVGP---PVPN-----VDVCL 451
A ++ YG TE + + + EM T P P P+ +D
Sbjct: 281 ARKLFERFPSAKIINAYGPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIIDEDG 340
Query: 452 ESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKE 490
+ + S GE+ V G V GY + T E
Sbjct: 341 KELS-------SGEQ-GEIIVTGPAVSKGYLNNPEKTAE 371
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512 | Back alignment and structure |
|---|
Score = 68.7 bits (169), Expect = 1e-12
Identities = 42/279 (15%), Positives = 85/279 (30%), Gaps = 74/279 (26%)
Query: 227 IMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIE 286
I+YTSG+TG+PKGV ++ +V+F L + V+++ P + FD ++
Sbjct: 149 IIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFN-----LQTGQVFLNQAPFS--FDLSVM 201
Query: 287 EVF--ISNGAAIGF----WRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGG 340
+++ + G + K L + + ++ + P S +
Sbjct: 202 DIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTP-------SFAEMCLMEAS 254
Query: 341 LLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPH 400
+ L N+K + G
Sbjct: 255 FSESML---------PNMK----------------------------TFLFCGEVLPNEV 277
Query: 401 VETFLRVVACAHVLQGYGLTET--CAGTFVSLPNEMSMIGTV--GPPVPN-----VDVCL 451
+ A ++ YG TE + ++ G + +
Sbjct: 278 ARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMKEDG 337
Query: 452 ESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKE 490
P+ GE+ + G +V GY +LT++
Sbjct: 338 TIAPD-------GEK-GEIVIVGPSVSVGYLGSPELTEK 368
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511 | Back alignment and structure |
|---|
Score = 67.9 bits (167), Expect = 3e-12
Identities = 46/279 (16%), Positives = 97/279 (34%), Gaps = 74/279 (26%)
Query: 227 IMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIE 286
I+YTSG+TG+PKGV +S N+ +F + ++ ++++ P + FD ++
Sbjct: 148 IIYTSGSTGNPKGVQISAANLQSFTDWICADFP-----VSGGKIFLNQAPFS--FDLSVM 200
Query: 287 EVF--ISNGAAIGF----WRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGG 340
+++ + +G + K+L E++ + ++ + P S + + G
Sbjct: 201 DLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTP-------SFVQMCLMDPG 253
Query: 341 LLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPH 400
+ L + + G
Sbjct: 254 FSQDLL---------PHAD----------------------------TFMFCGEVLPVSV 276
Query: 401 VETFLRVVACAHVLQGYGLTET--CAGTFVSLPNEMSMIGTV--GPPVPN-----VDVCL 451
+ L A + YG TE + + +S ++ G P+ +D
Sbjct: 277 AKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMDEEG 336
Query: 452 ESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKE 490
+ +PE GE+ + G +V GY +LT++
Sbjct: 337 QPLPE-------GEK-GEIVIAGPSVSRGYLGEPELTEK 367
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562 | Back alignment and structure |
|---|
Score = 65.7 bits (161), Expect = 2e-11
Identities = 61/293 (20%), Positives = 89/293 (30%), Gaps = 72/293 (24%)
Query: 216 LPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEK---LTSEDVYV 272
L +N ++YTSG+TG PKGV VS N+ +F L+ +V K L ++
Sbjct: 169 LNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFL 228
Query: 273 SYLPLAHIFDRAIEEVF--ISNGAAIGFWRGDVKL--LLEDIGELKPTIFCAVPRVLDRI 328
A FD I E+F G L L EL T VP
Sbjct: 229 CLASRA--FDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVP------ 280
Query: 329 YSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVR 388
S L+Q +L
Sbjct: 281 -SLLDQTGLVPEDA-------------PHLV----------------------------Y 298
Query: 389 LILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNV- 447
L + G + + A ++ YG TE G S +G P+ +
Sbjct: 299 LGVGGEKMTPRTQQIWSSSDRVA-LVNVYGPTEVTIGCSAGRILPDSDTRCIGHPLGDSV 357
Query: 448 -----DVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDG 495
E V + GE+ ++GS V +GY R D ++G
Sbjct: 358 AHVLAPGSNEHVKK-------GMA-GELVIEGSLVANGYLNRPDAKGFCDING 402
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Length = 369 | Back alignment and structure |
|---|
Score = 54.3 bits (130), Expect = 4e-08
Identities = 39/296 (13%), Positives = 76/296 (25%), Gaps = 50/296 (16%)
Query: 222 NDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPL-AHI 280
+ + + GTTG PK V+ + I I+ + ++ +P HI
Sbjct: 91 DSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRP--GRPSGNTLAAIPTGPHI 148
Query: 281 FDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGG 340
+E + G D + + + E V + + ++Q ++
Sbjct: 149 VGAINKERALRLGGMFFSIDIDPRWVKRSLSEGDTA---TVRKYTHHL---VDQVQNTLM 202
Query: 341 LLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPH 400
+ + + + I G L
Sbjct: 203 NQDIRFLVTTPPV-------------LRELLKRPEVVLQMKQ---SLAQITLGGTELNLD 246
Query: 401 VETFLR--VVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVC------LE 452
F+ ++ YG T + L S P + +
Sbjct: 247 EIKFIASEILPDCEFSASYGSTSALGVSRSLLITSESQQVIYDSFSPFITYDVVDSITAQ 306
Query: 453 SVPEMEYDALSSTPRGEVCVKGSTVFS------GYYKREDLTKEVMVDGWFHTGMG 502
+V E RG V V T S +R+ + V G+ +
Sbjct: 307 TVEYGE--------RGNVIV---THLSPWAFYPRVAERDTAIRLPGVSGFAGDRLA 351
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.7 bits (102), Expect = 1e-04
Identities = 54/420 (12%), Positives = 114/420 (27%), Gaps = 154/420 (36%)
Query: 23 IGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVW-KTY 81
I P + S D + S R ++ P L ++ V
Sbjct: 209 IDPNWTSR--SDHSSNIKLRIHSIQAELRRLLKSKPYENCL---LVLLN-----VQNAKA 258
Query: 82 KEVYDL------------VIKVVNAIRTC---------GVEERGKCGIYG--VNC----- 113
++L V ++A T + + ++C
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318
Query: 114 PEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTE 173
P E P +SI I E ++ T +
Sbjct: 319 PR-----EVLT-----TNPRR----------------LSI-------IAESIRDGLATWD 345
Query: 174 HLKTI----------VSFSKVKP-EQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKN 222
+ K + S + ++P E R+ ++ L+V+ +P
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR--LSVFPPSA----------HIPTI--- 390
Query: 223 DICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282
+ ++++ D V+ L+E ++ T +P ++
Sbjct: 391 -LLSLIWFDVIKSDVMVVVNKLHK--------YSLVEKQPKEST------ISIPSIYL-- 433
Query: 283 RAIEEVFISNGAAIGFWRGDVKLLLEDIGEL-KPTIFCAVPRVLDRIYSGLNQKISSGGL 341
++K+ LE+ L + ++D Y+ + + S L
Sbjct: 434 -------------------ELKVKLENEYALHR--------SIVDH-YN-IPKTFDSDDL 464
Query: 342 LKKTLFNIAYSYKFHNLKKGHKHVEASPIADKI-VFDKVKQSFG-GRVRLILSGAAPLTP 399
+ L Y Y GH H++ +++ +F V F ++ A
Sbjct: 465 IPPYLDQ--YFYSH----IGH-HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNAS 517
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 507 | |||
| 3g7s_A | 549 | Long-chain-fatty-acid--COA ligase (FADD-1); protei | 100.0 | |
| 1v25_A | 541 | Long-chain-fatty-acid-COA synthetase; ligase, stru | 100.0 | |
| 3rix_A | 550 | Luciferase, luciferin 4-monooxygenase; oxidoreduct | 100.0 | |
| 3ni2_A | 536 | 4-coumarate:COA ligase; 4CL, phenylpropanoid biosy | 100.0 | |
| 3o83_A | 544 | Peptide arylation enzyme; ligase, adenylation of 2 | 100.0 | |
| 3etc_A | 580 | AMP-binding protein; adenylate-forming acyl-COA sy | 100.0 | |
| 3r44_A | 517 | Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s | 100.0 | |
| 1mdb_A | 539 | 2,3-dihydroxybenzoate-AMP ligase; adenylation doma | 100.0 | |
| 2d1s_A | 548 | Luciferase, luciferin 4-monooxygenase; alpha/beta, | 100.0 | |
| 1t5h_X | 504 | 4-chlorobenzoyl COA ligase; adenylate-forming coen | 100.0 | |
| 3ivr_A | 509 | Putative long-chain-fatty-acid COA ligase; structu | 100.0 | |
| 3c5e_A | 570 | Acyl-coenzyme A synthetase ACSM2A, mitochondrial; | 100.0 | |
| 3t5a_A | 480 | Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C | 100.0 | |
| 1pg4_A | 652 | Acetyl-COA synthetase; AMP-forming, adenylate-form | 100.0 | |
| 4gr5_A | 570 | Non-ribosomal peptide synthetase; MBTH-like domain | 100.0 | |
| 2v7b_A | 529 | Benzoate-coenzyme A ligase; benzoate oxidation, be | 100.0 | |
| 4fuq_A | 503 | Malonyl COA synthetase; ANL superfamily, methylma | 100.0 | |
| 1ry2_A | 663 | Acetyl-coenzyme A synthetase 1, acyl-activating en | 100.0 | |
| 1amu_A | 563 | GRSA, gramicidin synthetase 1; peptide synthetase, | 100.0 | |
| 3rg2_A | 617 | Enterobactin synthase component E (ENTE), 2,3-DIH | 100.0 | |
| 4dg8_A | 620 | PA1221; ANL superfamily, adenylation domain, pepti | 100.0 | |
| 3tsy_A | 979 | Fusion protein 4-coumarate--COA ligase 1, resvera | 100.0 | |
| 3e7w_A | 511 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 3fce_A | 512 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 3l8c_A | 521 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 3kxw_A | 590 | Saframycin MX1 synthetase B; fatty acid AMP ligase | 100.0 | |
| 3gqw_A | 576 | Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen | 100.0 | |
| 3ite_A | 562 | SIDN siderophore synthetase; ligase, non-ribosomal | 100.0 | |
| 3ipl_A | 501 | 2-succinylbenzoate--COA ligase; structural genomic | 100.0 | |
| 3nyq_A | 505 | Malonyl-COA ligase; A/B topology ababa sandwich be | 100.0 | |
| 2vsq_A | 1304 | Surfactin synthetase subunit 3; ligase, peptidyl c | 100.0 | |
| 4gs5_A | 358 | Acyl-COA synthetase (AMP-forming)/AMP-acid ligase | 99.98 | |
| 3qov_A | 436 | Phenylacetate-coenzyme A ligase; acetyl-COA synthe | 99.97 | |
| 2y27_A | 437 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 99.97 | |
| 2y4o_A | 443 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 99.97 | |
| 3hgu_A | 369 | EHPF; phenazine, antibiotic, biosynthetic protein; | 99.96 | |
| 4eql_A | 581 | 4-substituted benzoates-glutamate ligase GH3.12; f | 95.64 | |
| 4b2g_A | 609 | GH3-1 auxin conjugating enzyme; signaling protein, | 95.58 | |
| 4epl_A | 581 | Jasmonic acid-amido synthetase JAR1; ANL adenylati | 93.19 | |
| 2y27_A | 437 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 92.75 | |
| 2y4o_A | 443 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 92.28 | |
| 3qov_A | 436 | Phenylacetate-coenzyme A ligase; acetyl-COA synthe | 90.54 | |
| 3ipl_A | 501 | 2-succinylbenzoate--COA ligase; structural genomic | 87.91 | |
| 3hgu_A | 369 | EHPF; phenazine, antibiotic, biosynthetic protein; | 85.13 |
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-59 Score=490.76 Aligned_cols=404 Identities=22% Similarity=0.307 Sum_probs=336.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhCCCCCceeeEeeccCc--CCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCC
Q 010568 35 GFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGK--AGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVN 112 (507)
Q Consensus 35 ~~~~~~~~~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~--~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n 112 (507)
+++.......|+.++|+++++++||++|+++. ++. .+..+++||+||.++++++|++|++.|+++||+|+|+++|
T Consensus 10 ~~p~~~~~~~~l~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~ 86 (549)
T 3g7s_A 10 GFPSLYYPKISLADRIDAAAEKFGEKTAIISA---EPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPN 86 (549)
T ss_dssp CCCCCCCCCCCTTHHHHHHHHHHTTSEEEEEE---SSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCS
T ss_pred CCCCCCcCCCCHHHHHHHHHHhCCCceEEEeC---CCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCC
Confidence 34445566789999999999999999999987 521 2334679999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHH
Q 010568 113 CPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEI 192 (507)
Q Consensus 113 ~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 192 (507)
++++++++|||+++|++++|++|.++.+++.++++.++++++|++......+....... ....++.++..
T Consensus 87 ~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~-------- 156 (549)
T 3g7s_A 87 SIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKT--GVERVFVVGGE-------- 156 (549)
T ss_dssp SHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTS--CCCEEEEETCS--------
T ss_pred CHHHHHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhC--CCcEEEEeCCC--------
Confidence 99999999999999999999999999999999999999999999988776655544332 24556555432
Q ss_pred hhcCceEeeHHHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEE
Q 010568 193 EKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYV 272 (507)
Q Consensus 193 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l 272 (507)
...++++...............++++++|+|||||||.||+|+++|.++...+..+...+ ++...|+++
T Consensus 157 ------~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~~ 225 (549)
T 3g7s_A 157 ------VNSLSEVMDSGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVAT-----GLSHMDTIV 225 (549)
T ss_dssp ------SSCHHHHHHHSCSCCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHH-----CCCTTCEEE
T ss_pred ------CcCHHHHHhcCccccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHc-----CCCCCCEEE
Confidence 235666665543322222222348999999999999999999999999999988865544 788999999
Q ss_pred EecChHHHHHHHHHHHHHHcCCEEEEecC-CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHH
Q 010568 273 SYLPLAHIFDRAIEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAY 351 (507)
Q Consensus 273 ~~~pl~h~~g~~~~~~~l~~G~~v~l~~~-~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 351 (507)
+.+|++|.+++..++.++..|+++++.+. ++..+++.|+++++|+++++|++++.+++.........
T Consensus 226 ~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~------------ 293 (549)
T 3g7s_A 226 GCMPMFHSAEFGLVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTY------------ 293 (549)
T ss_dssp CCSCTTSHHHHHHHTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCC------------
T ss_pred EeCcHHHHHHHHHHHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccC------------
Confidence 99999999999888888999999999876 99999999999999999999999999877543321100
Q ss_pred HhHHhhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHh----hC---CcEEeecccccCcc
Q 010568 352 SYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVV----AC---AHVLQGYGLTETCA 424 (507)
Q Consensus 352 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~----~~---~~v~~~YG~tE~~~ 424 (507)
..+++|.+++||+++++++.+.+.+. ++ +++++.||+||+++
T Consensus 294 -------------------------------~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~ 342 (549)
T 3g7s_A 294 -------------------------------DWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACP 342 (549)
T ss_dssp -------------------------------CCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSS
T ss_pred -------------------------------CccceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccceEeccccch
Confidence 01379999999999999999999887 56 89999999999998
Q ss_pred ceeccCCCCCccCCcccccccCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhc---ccC--ceee
Q 010568 425 GTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM---VDG--WFHT 499 (507)
Q Consensus 425 ~~~~~~~~~~~~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~---~dg--w~~T 499 (507)
+++..........+++|+|++|++++|+|.++++.++ .|+.|||+|+||+++.|||++|+.++++| .+| ||+|
T Consensus 343 ~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~--~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~T 420 (549)
T 3g7s_A 343 MVTTNPPLRLDKSTTQGVPMSDIELKVISLEDGRELG--VGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRT 420 (549)
T ss_dssp EEEECCGGGGGGTTSCCEECTTCEEEEECSSSCCEEC--TTCCEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEEE
T ss_pred hhhcCCccccCcCCCccccCCCCEEEEEeCCCCcCCC--CCCceEEEEECcchhhhhCCChhhhhhhhhccCCCCceEcc
Confidence 8877666554556899999999999999955555444 56999999999999999999999999999 678 9999
Q ss_pred c-cEEEecC
Q 010568 500 G-MGVWEQL 507 (507)
Q Consensus 500 G-lg~~d~d 507 (507)
| +|++|+|
T Consensus 421 GDl~~~~~d 429 (549)
T 3g7s_A 421 GDVGFIDEE 429 (549)
T ss_dssp EEEEEECTT
T ss_pred CcEEEEcCC
Confidence 9 9999986
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-59 Score=488.30 Aligned_cols=395 Identities=22% Similarity=0.306 Sum_probs=326.3
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHHHH
Q 010568 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (507)
Q Consensus 43 ~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (507)
..|+.++|+++++++||++|+++. ++ +..+++||+||.++++++|++|+++|+++||+|+++++|++++++++||
T Consensus 17 ~~~l~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA 91 (541)
T 1v25_A 17 ELNLWDFLERAAALFGRKEVVSRL---HT--GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFA 91 (541)
T ss_dssp CCCTHHHHHHHHHHSTTCEEEEEC---TT--SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCceEEEEe---cC--CCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence 368999999999999999999864 22 2236899999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCceEeeH
Q 010568 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSW 202 (507)
Q Consensus 123 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 202 (507)
|+++|++++|++|.++.+++.++++.++++++|++.+....+...... .+.++.++.++..... ....+
T Consensus 92 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----------~~~~~ 160 (541)
T 1v25_A 92 VPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGE-LKTVQHFVVMDEKAPE----------GYLAY 160 (541)
T ss_dssp HHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGG-CSSCCEEEESSSCCCT----------TCEEH
T ss_pred HHhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhh-CCCccEEEEecCCCCc----------ccccH
Confidence 999999999999999999999999999999999998766554443322 2445566666543210 13356
Q ss_pred HHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHH
Q 010568 203 DEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282 (507)
Q Consensus 203 ~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g 282 (507)
++++..... .....++++++|+|||||||.||+|.++|.+++....... .....++..+|++++.+|++|.++
T Consensus 161 ~~~~~~~~~----~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~---~~~~~~~~~~d~~l~~~p~~h~~~ 233 (541)
T 1v25_A 161 EEALGEEAD----PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAAS---LVDGTALSEKDVVLPVVPMFHVNA 233 (541)
T ss_dssp HHHCCSCCC----CCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTT---STTTTCCCTTCEEEECSCTTSHHH
T ss_pred HHHhhccCC----cccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhh---hcccccCCCCCEEEEeccchhhhH
Confidence 665543311 1344678999999999999999999999999987665421 112336788999999999999999
Q ss_pred HHHHHHHHHcCCEEEEecC--CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhHHhhhhc
Q 010568 283 RAIEEVFISNGAAIGFWRG--DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKK 360 (507)
Q Consensus 283 ~~~~~~~l~~G~~v~l~~~--~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 360 (507)
+...+.+++.|+++++.+. ++..+++.++++++|+++++|++++.+++.......
T Consensus 234 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~----------------------- 290 (541)
T 1v25_A 234 WCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGH----------------------- 290 (541)
T ss_dssp HTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTC-----------------------
T ss_pred HHHHHHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCC-----------------------
Confidence 9778888999999999864 999999999999999999999999998765432211
Q ss_pred CCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhCCcEEeecccccCccceeccCCCC-------
Q 010568 361 GHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNE------- 433 (507)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~------- 433 (507)
..+++|.+++||+++++++.+.+ +.+++++++.||+||++.+++......
T Consensus 291 ----------------------~l~~lr~i~~gG~~l~~~~~~~~-~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~ 347 (541)
T 1v25_A 291 ----------------------RLKTLRRLVVGGSAAPRSLIARF-ERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSE 347 (541)
T ss_dssp ----------------------CCSSCCEEEECSSCCCHHHHHHH-HHTTCEEEEEEECGGGSSEEEECCCCGGGTTSCH
T ss_pred ----------------------cchhccEEEECCCCCCHHHHHHH-HHhCCceeecccccccccceecccccccccccCc
Confidence 11379999999999999999999 567999999999999998776654431
Q ss_pred ---CccCCcccccccCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhc-ccCceeec-cEEEecC
Q 010568 434 ---MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTG-MGVWEQL 507 (507)
Q Consensus 434 ---~~~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~-~dgw~~TG-lg~~d~d 507 (507)
....+++|+|+||++++|+| ++++.++.+.++.|||+|+||+++.|||++|+.|+++| .||||+|| +|++|+|
T Consensus 348 ~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~~~~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDlg~~d~d 425 (541)
T 1v25_A 348 EEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEE 425 (541)
T ss_dssp HHHHHHHTSCBEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECTT
T ss_pred cccccccCCCCCcCCCcEEEEEC-CCCCCCCCCCCcceEEEEeCcchhccccCChhhhhhhccCCCCeEcCCEEEEcCC
Confidence 02347899999999999999 88887776545799999999999999999999999999 59999999 9999976
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-59 Score=492.36 Aligned_cols=407 Identities=20% Similarity=0.314 Sum_probs=326.5
Q ss_pred CCCCCCCCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhh
Q 010568 37 PAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEW 116 (507)
Q Consensus 37 ~~~~~~~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~ 116 (507)
+..+....|+.++|.++++++||++|++... ++..+ +++||+||.++++++|++|+++|+++||+|+|+++|++++
T Consensus 13 ~~~~~~~~tl~~~l~~~a~~~p~~~a~~a~~--~~~~~--~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~ 88 (550)
T 3rix_A 13 PFYPLEDGTAGEQLHKAMKRYALVPGTIAFT--DAHIE--VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQF 88 (550)
T ss_dssp CSSCCCCSCHHHHHHHHHHHHHTSTTCEEEE--ETTTC--CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTT
T ss_pred CCCCcccCCHHHHHHHHHHhCCCCceEEEee--ecCCC--cEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccH
Confidence 4445566899999999999999999987320 22111 5799999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcC
Q 010568 117 IIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYG 196 (507)
Q Consensus 117 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 196 (507)
++++|||+++|++++|++|.++.+++.++++.++++++|++.+....+....... +.+..++.++.....
T Consensus 89 ~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--------- 158 (550)
T 3rix_A 89 FMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKL-PIIQKIIIMDSKTDY--------- 158 (550)
T ss_dssp HHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHC-TTCCEEEETTCSSCB---------
T ss_pred HHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhC-CCcceEEEEcCCccc---------
Confidence 9999999999999999999999999999999999999999988766555443322 456667766543211
Q ss_pred ceEeeHHHHHhccccCC------CCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcE
Q 010568 197 LAVYSWDEFLQLGENKQ------FDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDV 270 (507)
Q Consensus 197 ~~~~~~~~l~~~~~~~~------~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~ 270 (507)
.....+.++........ .+.....++++++|+|||||||.||+|.++|.++...+......+ ...++..+++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~--~~~~~~~~~~ 236 (550)
T 3rix_A 159 QGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPI--FGNQIIPDTA 236 (550)
T ss_dssp TTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTT--TSCCCCTTCE
T ss_pred cCcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhh--ccccCCCCcE
Confidence 12445666665432211 111122457899999999999999999999999988877643221 1136788999
Q ss_pred EEEecChHHHHHHHHHHHHHHcCCEEEEecC-CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHH
Q 010568 271 YVSYLPLAHIFDRAIEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNI 349 (507)
Q Consensus 271 ~l~~~pl~h~~g~~~~~~~l~~G~~v~l~~~-~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~ 349 (507)
+++.+|++|.+++...+.+++.|+++++.+. ++..+++.|+++++|+++++|+++..+++...
T Consensus 237 ~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~---------------- 300 (550)
T 3rix_A 237 ILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTL---------------- 300 (550)
T ss_dssp EEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCG----------------
T ss_pred EEEechHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCcc----------------
Confidence 9999999999999888889999999999876 99999999999999999999999999865211
Q ss_pred HHHhHHhhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhCCc-EEeecccccCccceec
Q 010568 350 AYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAH-VLQGYGLTETCAGTFV 428 (507)
Q Consensus 350 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~~~-v~~~YG~tE~~~~~~~ 428 (507)
....++ ++||.+++||+++++++.+.+.+.++.. +++.||+||+++.++.
T Consensus 301 ---------------------~~~~~l--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~ 351 (550)
T 3rix_A 301 ---------------------IDKYDL--------SNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILI 351 (550)
T ss_dssp ---------------------GGGSCC--------TTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEE
T ss_pred ---------------------ccccCc--------ccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCccccceec
Confidence 111111 3899999999999999999999998865 9999999999988777
Q ss_pred cCCCCCccCCcccccccCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhc-ccCceeec-cEEEec
Q 010568 429 SLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTG-MGVWEQ 506 (507)
Q Consensus 429 ~~~~~~~~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~-~dgw~~TG-lg~~d~ 506 (507)
...... ..+++|+|+|+++++|+|.+++. +++.|+.|||+|+|++++.|||++|+.+++.| .||||+|| +|++|+
T Consensus 352 ~~~~~~-~~~~vG~~~~~~~~~i~d~~~~~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~ 428 (550)
T 3rix_A 352 TPEGDD-KPGAVGKVVPFFEAKVVDLDTGK--TLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDE 428 (550)
T ss_dssp CCTTCC-CTTEEEEECTTCEEEEECTTTCC--BCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECT
T ss_pred CCCCCC-CCCCcccccCCcEEEEEeCCCCc--CCCCCCCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEeC
Confidence 665443 45899999999999999933344 44556999999999999999999999999999 89999999 999998
Q ss_pred C
Q 010568 507 L 507 (507)
Q Consensus 507 d 507 (507)
|
T Consensus 429 d 429 (550)
T 3rix_A 429 D 429 (550)
T ss_dssp T
T ss_pred C
Confidence 6
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-59 Score=489.94 Aligned_cols=412 Identities=22% Similarity=0.261 Sum_probs=331.2
Q ss_pred CCCceeecCccCCCCCCCCCCCCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCC
Q 010568 22 SIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVE 101 (507)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~ 101 (507)
....+|++...... .+...|+.++|.++++++||++|+++. ++. +++||+||.++++++|++|+++|++
T Consensus 4 ~~~~i~~~~~~~~~----~p~~~~l~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~ 72 (536)
T 3ni2_A 4 QEEFIFRSKLPDIY----IPKNLPLHSYVLENLSNHSSKPCLING---ANG----DVYTYADVELTARRVASGLNKIGIQ 72 (536)
T ss_dssp -CCCCBCCSSCCCC----CCSSCCHHHHHTTTGGGSTTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHTTCC
T ss_pred ccceEEecCCCCCC----CCCCCcHHHHHHHHhhcCCCceEEEEC---CCC----CEEEHHHHHHHHHHHHHHHHHcCCC
Confidence 44566666654322 234589999999999999999999864 322 5799999999999999999999999
Q ss_pred CCCEEEEEeCCchhhHHHHHHHHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEe
Q 010568 102 ERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSF 181 (507)
Q Consensus 102 ~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~ 181 (507)
+||+|+|+++|++++++++|||+++|++++|++|.++.+++.++++.++++++|++......+...... ... .++.+
T Consensus 73 ~gd~V~i~~~~~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~--~~~-~~~~~ 149 (536)
T 3ni2_A 73 QGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARE--SDV-KVMCV 149 (536)
T ss_dssp TTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHH--HTC-EEEES
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhh--cCc-eEEEe
Confidence 999999999999999999999999999999999999999999999999999999998766554433211 112 34444
Q ss_pred cCCChhhHHHHhhcCceEeeHHHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhc
Q 010568 182 SKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESV 261 (507)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~ 261 (507)
+.... ....++++...... ..+.....++++++|+|||||||.||+|+++|.+++..+....... ..
T Consensus 150 ~~~~~-----------~~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~-~~ 216 (536)
T 3ni2_A 150 DSAPD-----------GCLHFSELTQADEN-EAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGD-NP 216 (536)
T ss_dssp SCCCT-----------TCEETHHHHTSCGG-GCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSS-SC
T ss_pred cCCCC-----------CccCHHHHhhcccc-ccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhc-cc
Confidence 43221 23466666654422 2233345789999999999999999999999999988876532211 11
Q ss_pred cccCCCCcEEEEecChHHHHHHHH-HHHHHHcCCEEEEecC-CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhcc
Q 010568 262 NEKLTSEDVYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSG 339 (507)
Q Consensus 262 ~~~~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~v~l~~~-~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~ 339 (507)
...+..+|++++.+|++|.+++.. ++.++..|+++++.+. ++..+++.++++++|+++++|+++..+++..
T Consensus 217 ~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~------- 289 (536)
T 3ni2_A 217 NLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSP------- 289 (536)
T ss_dssp SSCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCS-------
T ss_pred cccCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCc-------
Confidence 335788999999999999999965 7788999999999876 9999999999999999999999999886421
Q ss_pred chhHHHHHHHHHHhHHhhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhh-CCcEEeecc
Q 010568 340 GLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYG 418 (507)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~-~~~v~~~YG 418 (507)
.....+ .+++|.+++||+++++++.+.+++.+ ++++++.||
T Consensus 290 ------------------------------~~~~~~--------l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~YG 331 (536)
T 3ni2_A 290 ------------------------------DLDKHD--------LSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYG 331 (536)
T ss_dssp ------------------------------CGGGSC--------CTTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEEE
T ss_pred ------------------------------ccccCC--------CccceEEEECCCCCCHHHHHHHHHHCCCCCcccccc
Confidence 011111 13899999999999999999999988 899999999
Q ss_pred cccCccceeccC----CCCCccCCcccccccCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhc-c
Q 010568 419 LTETCAGTFVSL----PNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-V 493 (507)
Q Consensus 419 ~tE~~~~~~~~~----~~~~~~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~-~ 493 (507)
+||++.+++.+. ......++++|+|++|++++|+|.+++..+ +.|+.|||+|+|++++.|||++|+.+.+.| .
T Consensus 332 ~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~--~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~ 409 (536)
T 3ni2_A 332 MTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASL--PRNQPGEICIRGDQIMKGYLNDPEATSRTIDK 409 (536)
T ss_dssp CGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBC--CTTCCEEEEEESTTSCSEETTCHHHHHHHBCT
T ss_pred ccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCC--CCCCccEEEEeCcccchhhcCChhHHHhhccC
Confidence 999997765442 122334589999999999999993334444 456999999999999999999999999999 7
Q ss_pred cCceeec-cEEEecC
Q 010568 494 DGWFHTG-MGVWEQL 507 (507)
Q Consensus 494 dgw~~TG-lg~~d~d 507 (507)
+|||+|| +|++|+|
T Consensus 410 ~g~~~TGDl~~~~~d 424 (536)
T 3ni2_A 410 EGWLHTGDIGYIDDD 424 (536)
T ss_dssp TSCEEEEEEEEECTT
T ss_pred CCceEcccEEEEcCC
Confidence 9999999 9999986
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-59 Score=486.12 Aligned_cols=391 Identities=13% Similarity=0.155 Sum_probs=322.8
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHHHH
Q 010568 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (507)
Q Consensus 43 ~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (507)
..|+.++|+++++++||++|+++. + +++||+||.++++++|++|+++|+++||+|+|+++|++++++++||
T Consensus 29 ~~tl~~~l~~~a~~~p~~~Al~~~----~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA 99 (544)
T 3o83_A 29 DQPLTRILTVGVQSHPHSLAIICG----E-----RQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFA 99 (544)
T ss_dssp CCCTTHHHHHHHHHCTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCceEEEcC----C-----CceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHH
Confidence 478999999999999999999864 2 5799999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChh----HHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCce
Q 010568 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIP----EMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLA 198 (507)
Q Consensus 123 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 198 (507)
|+++|++++|+++.++.+++.++++.++++++|++..... ...............++.++....
T Consensus 100 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 167 (544)
T 3o83_A 100 LLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQAT------------ 167 (544)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCTT------------
T ss_pred HHHhCcEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCCcc------------
Confidence 9999999999999999999999999999999999886531 111111111134455555553311
Q ss_pred EeeHHHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChH
Q 010568 199 VYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLA 278 (507)
Q Consensus 199 ~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~ 278 (507)
...+.++...............++++++|+|||||||.||+|+++|.++...+......+ ++..+|++++.+|++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~ 242 (544)
T 3o83_A 168 DFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEIC-----GLNSNTRLLCALPAP 242 (544)
T ss_dssp SEEHHHHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTT
T ss_pred ccchhhhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHh-----CCCCCCeEEEecCcc
Confidence 124455554443322333455789999999999999999999999999999998865544 788999999999999
Q ss_pred HHHHHHH--HHHHHHcCCEEEEecC-CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhHH
Q 010568 279 HIFDRAI--EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKF 355 (507)
Q Consensus 279 h~~g~~~--~~~~l~~G~~v~l~~~-~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (507)
|.+++.. ++.++..|+++++.+. ++..+++.|+++++|+++++|+++..+++.....
T Consensus 243 h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-------------------- 302 (544)
T 3o83_A 243 HNFMLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQY-------------------- 302 (544)
T ss_dssp SHHHHHSSHHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTT--------------------
T ss_pred eEeecchHHHHHHHHcCCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhc--------------------
Confidence 9999874 7888999999999876 9999999999999999999999999987642211
Q ss_pred hhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhCCcEEeecccccCccceeccCCCCCc
Q 010568 356 HNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMS 435 (507)
Q Consensus 356 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~ 435 (507)
..++ ++||.+++||+++++++.+.+.+.+++++++.||+||++..+.........
T Consensus 303 -----------------~~~~--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~ 357 (544)
T 3o83_A 303 -----------------KDQI--------QSLKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTRLDDSDEQ 357 (544)
T ss_dssp -----------------HHHH--------TTCCEEEEESSCCCHHHHTHHHHHHCSEEEEEEECTTSCEEECCTTSCHHH
T ss_pred -----------------cccC--------CcceEEEEcCCCCCHHHHHHHHHHhCCcEEeeeccccccceeecCCCchhh
Confidence 0111 389999999999999999999999999999999999998655444333333
Q ss_pred cCCcccccc-cCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhc-ccCceeec-cEEEecC
Q 010568 436 MIGTVGPPV-PNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTG-MGVWEQL 507 (507)
Q Consensus 436 ~~~s~G~p~-pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~-~dgw~~TG-lg~~d~d 507 (507)
...++|+|+ ++++++|+| ++++.++. |+.|||+|+||+++.|||++|+.+++.| .||||+|| +|++|+|
T Consensus 358 ~~~~~G~p~~~~~~~~i~d-~~~~~~~~--g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~d 429 (544)
T 3o83_A 358 IFTTQGRPISSDDEIKIVD-EQYREVPE--GEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPD 429 (544)
T ss_dssp HHHCCCEESCTTCEEEEEC-TTSCBCCT--TCCEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECTT
T ss_pred ccCCCceecCCCcEEEEEC-CCCCCCCC--CCeeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEcCC
Confidence 447899996 899999999 87776554 5999999999999999999999999999 79999999 9999976
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-58 Score=483.30 Aligned_cols=397 Identities=17% Similarity=0.174 Sum_probs=324.3
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHH
Q 010568 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120 (507)
Q Consensus 41 ~~~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~ 120 (507)
..++...++|+++++++||++|+++. +. .+..+.+||+||.++++++|++|+++|+++||+|+|+++|++++++++
T Consensus 53 ~~~n~~~~~l~~~a~~~pd~~Al~~~---~~-~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~~ 128 (580)
T 3etc_A 53 ENFNFAYDVVDVYARDSPEKLAMIWC---DD-YGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCM 128 (580)
T ss_dssp SSCCHHHHTHHHHHHHCTTCEEEEEE---ES-SSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHHH
T ss_pred ccchHHHHHHHHHHhhCCCCEEEEEE---cC-CCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence 44566669999999999999999986 43 234578999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCCh--hHHhhcCCCCCCCc-cEEEEecCCChhhHHHHhhcCc
Q 010568 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKI--PEMLKTFPKTTEHL-KTIVSFSKVKPEQREEIEKYGL 197 (507)
Q Consensus 121 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~--~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~ 197 (507)
|||+++|++++|++|.++.+++.++++.++++++|++.+.. ..+....... +.+ ..++.++.... .
T Consensus 129 lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----------~ 197 (580)
T 3etc_A 129 LGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAEC-GDIPLKKAKVGGDVL----------E 197 (580)
T ss_dssp HHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHH-CSCCCEEEEESSSCC----------T
T ss_pred HHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhC-CCcceEEEEeCCccc----------c
Confidence 99999999999999999999999999999999999987654 3333222211 222 34555543211 1
Q ss_pred eEeeHHHHHhccccCCCCC---CCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEe
Q 010568 198 AVYSWDEFLQLGENKQFDL---PVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSY 274 (507)
Q Consensus 198 ~~~~~~~l~~~~~~~~~~~---~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~ 274 (507)
....+.+.+.......... ....++++++|+|||||||.||+|.++|.+++..+... ....++..++++++.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 272 (580)
T 3etc_A 198 GWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTA-----KYWQNVEDDGLHYTV 272 (580)
T ss_dssp TCEEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHH-----HTTSCCCTTCEEEEC
T ss_pred ccccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHH-----HHhhCCCCCceEEEe
Confidence 2456766665443221111 24578999999999999999999999999988777653 233478889999999
Q ss_pred cChHHHHHHHH-HHHHHHcCCEEEEec---CCHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHH
Q 010568 275 LPLAHIFDRAI-EEVFISNGAAIGFWR---GDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIA 350 (507)
Q Consensus 275 ~pl~h~~g~~~-~~~~l~~G~~v~l~~---~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 350 (507)
.|++|..+.+. ++.++..|+++++.+ +++..+++.|+++++|+++++|++++.|++..
T Consensus 273 ~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~------------------ 334 (580)
T 3etc_A 273 ADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKED------------------ 334 (580)
T ss_dssp CCTTSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSC------------------
T ss_pred CChHHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcc------------------
Confidence 99999888775 778899999999874 29999999999999999999999999885410
Q ss_pred HHhHHhhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhCCcEEeecccccCccceeccC
Q 010568 351 YSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSL 430 (507)
Q Consensus 351 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~~~v~~~YG~tE~~~~~~~~~ 430 (507)
.... ..++||.+++||+++++++.+++.+.+|+++++.||+||++..++...
T Consensus 335 --------------------~~~~--------~l~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~ 386 (580)
T 3etc_A 335 --------------------LSHY--------NFSTLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIATFP 386 (580)
T ss_dssp --------------------C-----------CCTTCCEEEECSSCCCHHHHHHHHHHHSCCCEEEECCTTSSCCEECCT
T ss_pred --------------------cccC--------CCccceEEEEccCCCCHHHHHHHHHHhCCeEecccccccccceeecCC
Confidence 0011 114899999999999999999999989999999999999987666554
Q ss_pred CCCCccCCcccccccCceEEEeecCCCccccCCCCCCceEEEec-----CCccccccCChhhhhhhcccCceeec-cEEE
Q 010568 431 PNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKG-----STVFSGYYKREDLTKEVMVDGWFHTG-MGVW 504 (507)
Q Consensus 431 ~~~~~~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g-----~~v~~gY~~~~~~~~~~~~dgw~~TG-lg~~ 504 (507)
.. ...++++|+|+||++++|+| ++++.++. |+.|||+|+| ++++.|||++|+.+++.|.||||+|| +|++
T Consensus 387 ~~-~~~~~~~G~p~~~~~v~ivd-~~g~~~~~--g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~~gwy~TGDlg~~ 462 (580)
T 3etc_A 387 WM-EPKPGSIGKPTPGYKIELMD-RDGRLCEV--GEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHDGYYHTGDMAWM 462 (580)
T ss_dssp TS-CCCTTCCBEECTTCEEEEEC-TTSCBCCT--TCCEEEEEECTTCCCTTCCCEETTCHHHHHHHEETTEEEEEEEEEE
T ss_pred CC-CCCCCccccCCCCCEEEEEC-CCCCCCCC--CCceEEEEecCCCCCCeeeccccCCHhHHHhhcCCCEEecCcEEEE
Confidence 43 34458999999999999999 88776554 5999999997 78999999999999999999999999 9999
Q ss_pred ecC
Q 010568 505 EQL 507 (507)
Q Consensus 505 d~d 507 (507)
|+|
T Consensus 463 d~d 465 (580)
T 3etc_A 463 DED 465 (580)
T ss_dssp CTT
T ss_pred CCC
Confidence 986
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-58 Score=480.94 Aligned_cols=391 Identities=22% Similarity=0.295 Sum_probs=318.6
Q ss_pred CCCCCCCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhH
Q 010568 38 APIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWI 117 (507)
Q Consensus 38 ~~~~~~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~ 117 (507)
...+...|+.++|+++++++||++|+++. +.. +++||+||.++++++|++|+++|+++||+|+|+++|+++++
T Consensus 10 ~~~~~~~~l~~~l~~~a~~~p~~~A~~~~---~~~----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~ 82 (517)
T 3r44_A 10 DDDDKMKNIGWMLRQRATVSPRLQAYVEP---STD----VRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFC 82 (517)
T ss_dssp --CGGGGCHHHHHHHHHHHSTTSEEEEEG---GGT----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHH
T ss_pred CCcccccCHHHHHHHHHHhCCCCeEEEeC---CcC----ceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHH
Confidence 34467799999999999999999999865 332 57999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCc
Q 010568 118 IGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGL 197 (507)
Q Consensus 118 ~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 197 (507)
+++|||+++|++++|++|.++.+++.++++.++++++|++......+....... .....++.+..
T Consensus 83 ~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~-------------- 147 (517)
T 3r44_A 83 CLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQA-DPPGTVTDWIG-------------- 147 (517)
T ss_dssp HHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSS-SCCTTCCEEEE--------------
T ss_pred HHHHHHHHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhcc-CCccEEEEccC--------------
Confidence 999999999999999999999999999999999999999987655443322111 11111111110
Q ss_pred eEeeHHHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecCh
Q 010568 198 AVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPL 277 (507)
Q Consensus 198 ~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl 277 (507)
...+.+...... .........++++++|+|||||||.||+|+++|.++.+.+..+...+ ++..+|++++.+|+
T Consensus 148 -~~~~~~~~~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~ 220 (517)
T 3r44_A 148 -ADSLAERLRSAA-ADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTI-----DVRYRDRLLLPLPM 220 (517)
T ss_dssp -HHHHHHHHHHCC-CCCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHS-----CCCTTCEEEECSCT
T ss_pred -cccHHHHhhccC-cCCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhc-----CCCCCCEEEEeCch
Confidence 012334443321 12233445789999999999999999999999999999988855544 78899999999999
Q ss_pred HHHHHHHHHHHHHHcCCEEEEecC-CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhHHh
Q 010568 278 AHIFDRAIEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFH 356 (507)
Q Consensus 278 ~h~~g~~~~~~~l~~G~~v~l~~~-~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (507)
+|.+++...+.+++.|+++++.+. ++..+++.+.++++|+++++|++++.+.+......
T Consensus 221 ~~~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-------------------- 280 (517)
T 3r44_A 221 FHVAALTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAE-------------------- 280 (517)
T ss_dssp TSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHH--------------------
T ss_pred HHHHHHHHHHHHHhcCeEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCccccc--------------------
Confidence 999999876666569999998876 99999999999999999999999999865321111
Q ss_pred hhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhCCcEEeecccccCccceeccCCCC-Cc
Q 010568 357 NLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNE-MS 435 (507)
Q Consensus 357 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~-~~ 435 (507)
...+++|.+++||+++++++.+.+.+. ++++++.||+||+++.++...... ..
T Consensus 281 -------------------------~~~~~lr~i~~gGe~l~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~ 334 (517)
T 3r44_A 281 -------------------------LDAPDFRYFITGGAPMPEALIKIYAAK-NIEVVQGYALTESCGGGTLLLSEDALR 334 (517)
T ss_dssp -------------------------CCCTTCCEEEECSSCCCHHHHHHHHHT-TCEEEEEEECGGGTTCEEEECGGGTTT
T ss_pred -------------------------CCCCcccEEEECCCCCCHHHHHHHHhc-CCcEEEeecccccccceeecCCccccc
Confidence 112489999999999999999999986 899999999999988776554433 34
Q ss_pred cCCcccccccCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhcccCceeec-cEEEecC
Q 010568 436 MIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG-MGVWEQL 507 (507)
Q Consensus 436 ~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~dgw~~TG-lg~~d~d 507 (507)
..+++|+|+++++++|+| +++..++.+ .|||+|+|++++.|||++|+.+.++|.+|||+|| +|++|+|
T Consensus 335 ~~~~~G~~~~~~~~~i~d-~~~~~~~~g---~GEl~v~g~~v~~GY~~~p~~t~~~f~~g~~~TGDl~~~~~d 403 (517)
T 3r44_A 335 KAGSAGRATMFTDVAVRG-DDGVIREHG---EGEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDDE 403 (517)
T ss_dssp TTTCCBEECTTEEEEEEC-TTSCEESSE---EEEEEEEETTSCSEETTCHHHHHHTEETTEEEEEEEEEECTT
T ss_pred cCCCCCcCCCCeEEEEEC-CCCCCCCCC---CeEEEEeCcchhhhhCCChhhhHhhhcCCCEecceeEEEcCC
Confidence 558999999999999999 777665553 7999999999999999999999999999999999 9999986
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-58 Score=481.90 Aligned_cols=387 Identities=15% Similarity=0.180 Sum_probs=314.1
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHHHH
Q 010568 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (507)
Q Consensus 43 ~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (507)
..|+.++|+++++++||++|+++. + +++||+||.++++++|++|+++|+++||+|+|+++|++++++++||
T Consensus 24 ~~tl~~~l~~~a~~~p~~~A~~~~---~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA 94 (539)
T 1mdb_A 24 GETFGDLLRDRAAKYGDRIAITCG---N------THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFA 94 (539)
T ss_dssp SCCHHHHHHHHHHHHTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCCEEEEeC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence 468999999999999999999853 2 5799999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChh----HHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCce
Q 010568 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIP----EMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLA 198 (507)
Q Consensus 123 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 198 (507)
|+++|++++|++|.++.+++.++++.++++++|++.+... ..........+.++.++..+...
T Consensus 95 ~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 161 (539)
T 1mdb_A 95 LFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAE------------- 161 (539)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCT-------------
T ss_pred HHHcCeEEecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCcc-------------
Confidence 9999999999999999999999999999999999875321 11111100113344454443211
Q ss_pred EeeHHHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChH
Q 010568 199 VYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLA 278 (507)
Q Consensus 199 ~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~ 278 (507)
.+.++.... ......+...++++++++|||||||.||+|.++|.++.+.+......+ ++..+|++++.+|++
T Consensus 162 --~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~ 233 (539)
T 1mdb_A 162 --EFLPLEDLH-TEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-----WLDHSTVYLAALPMA 233 (539)
T ss_dssp --TSEEGGGCC-CCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECSCTT
T ss_pred --chhhhhhcc-ccccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhh-----CCCCCCEEEEeeccc
Confidence 111122111 111122345678999999999999999999999999999888755544 688999999999999
Q ss_pred HHHHHHH--HHHHHHcCCEEEEecC-CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhHH
Q 010568 279 HIFDRAI--EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKF 355 (507)
Q Consensus 279 h~~g~~~--~~~~l~~G~~v~l~~~-~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (507)
|.+++.. ++.+++.|+++++.+. ++..+++.|+++++|+++++|++++.+++.......
T Consensus 234 h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~------------------ 295 (539)
T 1mdb_A 234 HNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRD------------------ 295 (539)
T ss_dssp SHHHHHSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCC------------------
T ss_pred ccchhhHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCC------------------
Confidence 9999874 7888999999999876 999999999999999999999999998764322110
Q ss_pred hhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhCCcEEeecccccCccceeccCCCCCc
Q 010568 356 HNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMS 435 (507)
Q Consensus 356 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~ 435 (507)
..++||.+++||+++++++.+++++.+++++++.||+||++..+.........
T Consensus 296 ---------------------------~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~ 348 (539)
T 1mdb_A 296 ---------------------------DLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEI 348 (539)
T ss_dssp ---------------------------CCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCTTSCHHH
T ss_pred ---------------------------CccceeEEEEcCCCCCHHHHHHHHHHhCCcEEEEEcCCCCcccccCCCCcHHh
Confidence 01389999999999999999999998999999999999965433322211122
Q ss_pred cCCcccccccCc-eEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhc-ccCceeec-cEEEecC
Q 010568 436 MIGTVGPPVPNV-DVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTG-MGVWEQL 507 (507)
Q Consensus 436 ~~~s~G~p~pg~-~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~-~dgw~~TG-lg~~d~d 507 (507)
..+++|+|+++. +++|+| ++++.++. |+.|||+|+||+++.|||++|+.|+++| .||||+|| +|++|+|
T Consensus 349 ~~~~~G~p~~~~~~~~i~d-~~~~~~~~--g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~d 420 (539)
T 1mdb_A 349 IVNTQGKPMSPYDESRVWD-DHDRDVKP--GETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRD 420 (539)
T ss_dssp HHHCCCEESSTTCEEEEEC-TTSCBCCT--TCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTT
T ss_pred cCCCCCcccCCCceEEEEC-CCCCCCcC--CCcceEEeeCcccchhhcCChhhhhhhccCCCCeecCceEEECCC
Confidence 347899999765 899999 77766554 5999999999999999999999999999 79999999 9999986
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-58 Score=477.70 Aligned_cols=412 Identities=23% Similarity=0.301 Sum_probs=325.3
Q ss_pred CCceeecCccCCCCCCCCCCCCCHHH-HHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCC
Q 010568 23 IGPVYRSLFAKDGFPAPIPGMESCWD-VFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVE 101 (507)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~tl~~-~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~ 101 (507)
.+++|++..... ..+...|+.+ +|.++++++ |++|+++. ++. +++||+||.++++++|+.|+++|++
T Consensus 8 ~~~~~~~~~~~~----~~p~~~~l~~~~l~~~~~~~-~~~A~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~ 75 (548)
T 2d1s_A 8 ENIVVGPKPFYP----IEEGSAGTQLRKYMERYAKL-GAIAFTNA---VTG----VDYSYAEYLEKSCCLGKALQNYGLV 75 (548)
T ss_dssp TTSEECCCCSSC----CCSSCHHHHHHHHHHHHHHH-TCEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHHTCC
T ss_pred cceEecCCCCCC----CCCCcCcHHHHHHHhhhccc-CCceEEEc---CCC----CEeeHHHHHHHHHHHHHHHHHcCCC
Confidence 346777664321 2234468999 899999999 99999863 222 5799999999999999999999999
Q ss_pred CCCEEEEEeCCchhhHHHHHHHHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEe
Q 010568 102 ERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSF 181 (507)
Q Consensus 102 ~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~ 181 (507)
+||+|+|+++|++++++++|||+++|++++|++|.++.+++.++++.++++++|++.+....+....... +....++.+
T Consensus 76 ~gd~V~i~~~n~~e~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~ 154 (548)
T 2d1s_A 76 VDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTV-TTIKTIVIL 154 (548)
T ss_dssp TTCEEEEECSSCTTTHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHS-TTCCEEEET
T ss_pred CCCEEEEEeCCchhHHHHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCC-CCCCEEEEe
Confidence 9999999999999999999999999999999999999999999999999999999988766544332111 223455555
Q ss_pred cCCChhhHHHHhhcCceEeeHHHHHhccccCCCCCCCCC-----C-CCeEEEEeccCCCCCCceeeeccHHHHHHHhhhh
Q 010568 182 SKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKK-----K-NDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVK 255 (507)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-----~-~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~ 255 (507)
+..... .....|+++............... + +++++|+|||||||.||+|.++|.++...+....
T Consensus 155 ~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~ 225 (548)
T 2d1s_A 155 DSKVDY---------RGYQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHAR 225 (548)
T ss_dssp TCSSCB---------TTBCBHHHHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHT
T ss_pred CCcccc---------cccccHHHHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhh
Confidence 432100 012356666654321101111111 3 8999999999999999999999999998887743
Q ss_pred hhhhhccccCCCCcEEEEecChHHHHHHHH-HHHHHHcCCEEEEecC-CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHH
Q 010568 256 CLLESVNEKLTSEDVYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLN 333 (507)
Q Consensus 256 ~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~v~l~~~-~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~ 333 (507)
..+ ...++..+|++++.+|++|.+++.. ++.++ .|+++++.+. ++..+++.|+++++|+++++|++++.+++..
T Consensus 226 ~~~--~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~- 301 (548)
T 2d1s_A 226 DPI--YGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSE- 301 (548)
T ss_dssp CTT--TSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCS-
T ss_pred chh--hccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCc-
Confidence 321 0146788999999999999999876 55567 9999998875 9999999999999999999999999886521
Q ss_pred HhhhccchhHHHHHHHHHHhHHhhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhh-CCc
Q 010568 334 QKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAH 412 (507)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~-~~~ 412 (507)
.....+ .+++|.+++||+++++++.+.+.+.+ +.+
T Consensus 302 ------------------------------------~~~~~~--------l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~ 337 (548)
T 2d1s_A 302 ------------------------------------LLNKYD--------LSNLVEIASGGAPLSKEVGEAVARRFNLPG 337 (548)
T ss_dssp ------------------------------------CGGGSC--------CTTCCEEEECSSCCCHHHHHHHHHHTTCSC
T ss_pred ------------------------------------cccccc--------ccceeEEEEcCccCCHHHHHHHHHHcCCCc
Confidence 001111 13899999999999999999999988 688
Q ss_pred EEeecccccCccceeccCCCCCccCCcccccccCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhc
Q 010568 413 VLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM 492 (507)
Q Consensus 413 v~~~YG~tE~~~~~~~~~~~~~~~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~ 492 (507)
+++.||+||++.+++..... ....+++|+|+|+++++|+|.++++.+ +.|+.|||+|+|++++.|||++|+.|.+.|
T Consensus 338 i~~~YG~TE~~~~~~~~~~~-~~~~~~~G~~~~~~~~~i~d~~~~~~~--~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f 414 (548)
T 2d1s_A 338 VRQGYGLTETTSAIIITPEG-DDKPGASGKVVPLFKAKVIDLDTKKSL--GPNRRGEVCVKGPMLMKGYVNNPEATKELI 414 (548)
T ss_dssp CEEEEECGGGSSEEEECCTT-CCCTTCCBEECTTCEEEEECTTTCCBC--CTTCCEEEEEESTTSCSEETTCHHHHHHHB
T ss_pred eeeccccccccceeeecCcc-cCCCCCCCccCCCceEEEEeCCcCccC--CCCCCeEEEECCHHHhhhhcCChHHhhhcc
Confidence 99999999998877664433 334589999999999999994344444 456999999999999999999999999999
Q ss_pred -ccCceeec-cEEEecC
Q 010568 493 -VDGWFHTG-MGVWEQL 507 (507)
Q Consensus 493 -~dgw~~TG-lg~~d~d 507 (507)
.+|||+|| +|++|+|
T Consensus 415 ~~~g~~~TGDl~~~~~d 431 (548)
T 2d1s_A 415 DEEGWLHTGDIGYYDEE 431 (548)
T ss_dssp CTTSCEEEEEEEEECTT
T ss_pred cCCcEEEccCEEEEcCC
Confidence 79999999 9999976
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-57 Score=470.40 Aligned_cols=379 Identities=19% Similarity=0.235 Sum_probs=305.6
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHHHH
Q 010568 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (507)
Q Consensus 43 ~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (507)
|+|+.++|+++++++||++|+.+. +.+ +++||+||.++++++|++|+++|+++||+|+|+++|++++++++||
T Consensus 1 M~tl~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA 73 (504)
T 1t5h_X 1 MQTVNEMLRRAATRAPDHCALAVP---ARG----LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILA 73 (504)
T ss_dssp CCCHHHHHHHHHHHCTTSEEEEET---TTT----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhCCCceEEEEc---CCC----ceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 578999999999999999999864 222 6799999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeeccCCCChHHHHHHHhhcCccEEEe--cCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCceEe
Q 010568 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFV--EEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVY 200 (507)
Q Consensus 123 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 200 (507)
|+++|++++|++|.++.+++.++++.++++++|+ +.+....+..... .++ ++
T Consensus 74 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~----~~~-~~--------------------- 127 (504)
T 1t5h_X 74 LHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGS----GAR-II--------------------- 127 (504)
T ss_dssp HHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHHCC----CCE-EE---------------------
T ss_pred HHHhCcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhccc----cce-eE---------------------
Confidence 9999999999999999999999999999999999 6654443312211 111 22
Q ss_pred eHHHHHhccc----cCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccC--CCCcEEEEe
Q 010568 201 SWDEFLQLGE----NKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKL--TSEDVYVSY 274 (507)
Q Consensus 201 ~~~~l~~~~~----~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~--~~~d~~l~~ 274 (507)
.++++..... ..........++++++|+|||||||.||+|.++|+++...+..+...+ ++ ..+|++++.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~-----~~~~~~~~~~l~~ 202 (504)
T 1t5h_X 128 FLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV-----GLRHGRHNVVLGL 202 (504)
T ss_dssp EGGGTEETTEECCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTT-----CCCSSTTCEEEEC
T ss_pred EecchhhcCcccccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhh-----CCCCCCCceEEee
Confidence 2223322210 111112345678999999999999999999999999998887754433 55 788999999
Q ss_pred cChHHHHHHH-HHHHHHHcCCEEEEecC-CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHH
Q 010568 275 LPLAHIFDRA-IEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYS 352 (507)
Q Consensus 275 ~pl~h~~g~~-~~~~~l~~G~~v~l~~~-~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 352 (507)
+|++|.+++. .++.++..|+++++.+. ++..+++.|+++++|+++++|++++.+++.......
T Consensus 203 ~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~--------------- 267 (504)
T 1t5h_X 203 MPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGS--------------- 267 (504)
T ss_dssp SCTTSHHHHTTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTC---------------
T ss_pred cchhhcchHHHHHHHHHHcCceEEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccc---------------
Confidence 9999999985 47888999999999876 999999999999999999999999998763211000
Q ss_pred hHHhhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhCCcEEeecccccCccceeccCCC
Q 010568 353 YKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPN 432 (507)
Q Consensus 353 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~ 432 (507)
. ...++||.+++||+++++++.+.+++.++..+++.||+||++. +....
T Consensus 268 --------------------~--------~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~-~~~~~-- 316 (504)
T 1t5h_X 268 --------------------S--------LKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMN-SLYMR-- 316 (504)
T ss_dssp --------------------C--------CCCTTCCEEEECCTTCCHHHHHHHHHHCCSEEEEEEEETTTEE-EEEEE--
T ss_pred --------------------c--------ccCccccEEEEcCCcCCHHHHHHHHHhcCcceeeeeccccccc-ccccc--
Confidence 0 0013899999999999999999999999999999999999943 32222
Q ss_pred CCccCCcccccccCceEEEeecCCC-ccccCCCCCCceEEEe-cCCccccccCChhhhhhhcccCceeec-cEEEecC
Q 010568 433 EMSMIGTVGPPVPNVDVCLESVPEM-EYDALSSTPRGEVCVK-GSTVFSGYYKREDLTKEVMVDGWFHTG-MGVWEQL 507 (507)
Q Consensus 433 ~~~~~~s~G~p~pg~~i~ivd~~~~-~~~~~~~g~~Gel~v~-g~~v~~gY~~~~~~~~~~~~dgw~~TG-lg~~d~d 507 (507)
....+++|.|.++++++|+| +++ ...+++.|+.|||+|+ |+.++.|||++|+.+.++|.||||+|| +|++|+|
T Consensus 317 -~~~~~~~g~p~~~~~~~i~~-~~~~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f~~g~~~TGDlg~~~~d 392 (504)
T 1t5h_X 317 -QPKTGTEMAPGFFSEVRIVR-IGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPE 392 (504)
T ss_dssp -SCSSSSEEBCCTTCCEEEEC-TTSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHEETTEEEEEEEEEECTT
T ss_pred -CCCCCccccCCCCCceeEEe-ccCCCCCcCCCCCcceEEEeCCceeeceecCCchhhhhhhcCCccccCcEEEECCC
Confidence 22348899999999999999 555 2234456699999999 999999999999999999999999999 9999986
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-57 Score=471.88 Aligned_cols=382 Identities=20% Similarity=0.282 Sum_probs=314.7
Q ss_pred CCCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHHH
Q 010568 42 GMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGME 121 (507)
Q Consensus 42 ~~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~l 121 (507)
...|+.++|+++++++||++|+++. + +++||+||.++++++|++|++.|+++||+|+++++|++++++++|
T Consensus 4 ~~~tl~~~l~~~a~~~pd~~Al~~~----~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~l 74 (509)
T 3ivr_A 4 HDFTLADVYRRNAALFPDRTAFMVD----G-----VRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIG 74 (509)
T ss_dssp TCCCHHHHHHHHHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHCCCceEEEEC----C-----cEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Confidence 4578999999999999999999864 2 579999999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCceEee
Q 010568 122 ACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYS 201 (507)
Q Consensus 122 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 201 (507)
||+++|++++|++|.++.+++.++++.++++++|++.+....+....... .....++.++.... .
T Consensus 75 A~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--------------~ 139 (509)
T 3ivr_A 75 AVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSL-GGVKKAYAIGDGSG--------------P 139 (509)
T ss_dssp HHHHTTCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGGC-SSCCEEEESSCCCS--------------S
T ss_pred HHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhccc-CCceEEEEcCCCCc--------------C
Confidence 99999999999999999999999999999999999998776644443322 55666666654211 1
Q ss_pred HHHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHH
Q 010568 202 WDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIF 281 (507)
Q Consensus 202 ~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~ 281 (507)
+.++...........+...++++++|+|||||||.||+|.++|.++...+..+...+ ++.++|++++.+|++|.+
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~ 214 (509)
T 3ivr_A 140 FAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAW-----RLTEADVNLGMLPLFHVT 214 (509)
T ss_dssp CEEGGGTCCCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTTSHH
T ss_pred hhhHhhccCCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhh-----CCCCCcEEEEeCCCcchh
Confidence 222222121223334456789999999999999999999999999999988865544 789999999999999999
Q ss_pred HHHHHHHHHHcCCEEEE-ecCCHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhHHhhhhc
Q 010568 282 DRAIEEVFISNGAAIGF-WRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKK 360 (507)
Q Consensus 282 g~~~~~~~l~~G~~v~l-~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 360 (507)
++...+.++..|+..++ ...++..+++.|+++++|+++++|+++..+++...
T Consensus 215 g~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~--------------------------- 267 (509)
T 3ivr_A 215 GLGLMLTLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAA--------------------------- 267 (509)
T ss_dssp HHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHCC---------------------------
T ss_pred HHHHHHHHHHhCCcEEEecccCHHHHHHHHHHHCCcEEEecHHHHHHHHhccc---------------------------
Confidence 99887766555555444 44499999999999999999999999999876320
Q ss_pred CCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhh-CCcEEeecccccCccceeccCCCCCccCCc
Q 010568 361 GHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVSLPNEMSMIGT 439 (507)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~~~~~~s 439 (507)
..++ +++|.++++|++ ++.+.+.+.+ ++++++.||+||++++++....... ..+
T Consensus 268 ------------~~~l--------~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~--~~~ 322 (509)
T 3ivr_A 268 ------------PAQL--------ASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGLSTFAPYRDR--PKS 322 (509)
T ss_dssp ------------GGGG--------TTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGGGTEEEEEEEGGGS--TTS
T ss_pred ------------ccch--------hhhheecccCCh---HHHHHHHHhcCCCeEEcccCccccccccccCccccC--CCc
Confidence 0001 378999999987 7788888887 8999999999999987766544332 255
Q ss_pred ccccccCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhcccCceeec-cEEEecC
Q 010568 440 VGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG-MGVWEQL 507 (507)
Q Consensus 440 ~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~dgw~~TG-lg~~d~d 507 (507)
+|+|++|++++|+| ++++.++. |+.|||+|+|++++.|||++|+.+.+.|.+|||+|| +|++|+|
T Consensus 323 ~G~p~~~~~~~i~d-~~~~~~~~--g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~g~~~TGDl~~~~~d 388 (509)
T 3ivr_A 323 AGRPLFWRTVAVVD-AEDRPLPP--GEVGEIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDMGRFDAD 388 (509)
T ss_dssp CCEECTTCEEEEEC-TTSCBCCT--TCCEEEEEESTTSCCEETTCHHHHHHHTGGGSEEEEEEEEECTT
T ss_pred ccccCCCcEEEEEC-CCCCCCCC--CCceEEEEecCCccccccCCHHHhHHHhhcCCcccccEEEECCC
Confidence 99999999999999 87765554 599999999999999999999999999999999999 9999976
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-57 Score=471.27 Aligned_cols=394 Identities=16% Similarity=0.163 Sum_probs=323.9
Q ss_pred CCCCCHHHHHHHHHHh-----CCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHC-CCCCCCEEEEEeCCch
Q 010568 41 PGMESCWDVFRMAVER-----NPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTC-GVEERGKCGIYGVNCP 114 (507)
Q Consensus 41 ~~~~tl~~~l~~~~~~-----~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~-gv~~gd~V~i~~~n~~ 114 (507)
..++++.++|++++++ +||++|+++. +. .+..+++||+||.++++++|++|++. |+++||+|+|+++|++
T Consensus 35 ~~~~~~~~~l~~~a~~~~a~~~p~~~al~~~---~~-~g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~ 110 (570)
T 3c5e_A 35 AKFNFASDVLDHWADMEKAGKRPPSPALWWV---NG-KGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVP 110 (570)
T ss_dssp SBCCHHHHTHHHHHHHHHTTSSCCCEEEEEE---CS-SSCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCH
T ss_pred ccccHHHHHHHHHHhhccccCCCCceEEEEE---cC-CCceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCH
Confidence 3456778999999999 9999999976 42 22346899999999999999999998 9999999999999999
Q ss_pred hhHHHHHHHHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhh
Q 010568 115 EWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEK 194 (507)
Q Consensus 115 ~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 194 (507)
++++++|||+++|++++|++|.++.+++.++++.++++++|++.+....+....... +.++.++.++....
T Consensus 111 e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-------- 181 (570)
T 3c5e_A 111 EWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASEC-PSLRIKLLVSEKSC-------- 181 (570)
T ss_dssp HHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGGC-TTCCEEEEESSSCC--------
T ss_pred HHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhcC-CceeEEEEecccCc--------
Confidence 999999999999999999999999999999999999999999988776654433222 44556666654211
Q ss_pred cCceEeeHHHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHH--HHhhhhhhhhhccccCCCCcEEE
Q 010568 195 YGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVT--FIAGVKCLLESVNEKLTSEDVYV 272 (507)
Q Consensus 195 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~--~~~~~~~~~~~~~~~~~~~d~~l 272 (507)
.....+++++..... ........++++++|+|||||||.||+|.++|. ++. .... . ...++..+|+++
T Consensus 182 --~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~-----~-~~~~~~~~d~~~ 251 (570)
T 3c5e_A 182 --DGWLNFKKLLNEAST-THHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMD-----A-GWTGLQASDIMW 251 (570)
T ss_dssp --TTSEEHHHHHHHSCS-CCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHH-----T-TTTSCCTTCEEE
T ss_pred --cccccHHHHhhcccc-cccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhh-----h-hhcCCCCCceEE
Confidence 013456676654322 122234567999999999999999999999999 544 3332 1 234678999999
Q ss_pred EecChHHHHHHHH-HHHHHHcCCEEEEec---CCHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHH
Q 010568 273 SYLPLAHIFDRAI-EEVFISNGAAIGFWR---GDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFN 348 (507)
Q Consensus 273 ~~~pl~h~~g~~~-~~~~l~~G~~v~l~~---~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~ 348 (507)
+.+|++|.+++.. ++.++..|+++++.+ .++..+++.|+++++|+++++|++++.+++..
T Consensus 252 ~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~---------------- 315 (570)
T 3c5e_A 252 TISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD---------------- 315 (570)
T ss_dssp ECCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC----------------
T ss_pred EcCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc----------------
Confidence 9999999999874 788899999999885 39999999999999999999999999886420
Q ss_pred HHHHhHHhhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhCCcEEeecccccCccceec
Q 010568 349 IAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFV 428 (507)
Q Consensus 349 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~~~v~~~YG~tE~~~~~~~ 428 (507)
... ...+++|.+++||+++++++.+.+.+.+++++++.||+||++..++.
T Consensus 316 ----------------------~~~--------~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~ 365 (570)
T 3c5e_A 316 ----------------------LSS--------YKFPHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMV 365 (570)
T ss_dssp ----------------------TTT--------CCCTTCCEEEEESSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEEC
T ss_pred ----------------------ccc--------cccccceEEEEcCCcCCHHHHHHHHHHhCCchhhccchhhcccceec
Confidence 000 01147999999999999999999999889999999999999876655
Q ss_pred cCCCCCccCCcccccccCceEEEeecCCCccccCCCCCCceEEEe-----cCCccccccCChhhhhhhcccCceeec-cE
Q 010568 429 SLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVK-----GSTVFSGYYKREDLTKEVMVDGWFHTG-MG 502 (507)
Q Consensus 429 ~~~~~~~~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~-----g~~v~~gY~~~~~~~~~~~~dgw~~TG-lg 502 (507)
.... ....+++|+|+||++++|+| ++++.++ .|+.|||+|+ |++++.|||++|+.+.+.|.+|||+|| +|
T Consensus 366 ~~~~-~~~~~~vG~p~~~~~v~i~d-~~g~~~~--~G~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f~~~~~~TGDlg 441 (570)
T 3c5e_A 366 SKTM-KIKPGYMGTAASCYDVQIID-DKGNVLP--PGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLLGDRG 441 (570)
T ss_dssp CTTS-CCCTTCCCEECTTCCEEEEC-TTSCBCC--TTCCEEEEEECSSBCCTTCCCEETTCHHHHHHTEETTEEEEEEEE
T ss_pred Cccc-ccCCCcccccCCCceEEEEC-CCCCCCC--CCCCCeeEEeccCCCCchhhccccCChhHhhhhhcCCccccceeE
Confidence 4432 33458999999999999999 8777655 4599999999 999999999999999999999999999 99
Q ss_pred EEecC
Q 010568 503 VWEQL 507 (507)
Q Consensus 503 ~~d~d 507 (507)
++|+|
T Consensus 442 ~~d~d 446 (570)
T 3c5e_A 442 IKDED 446 (570)
T ss_dssp EECTT
T ss_pred EEcCC
Confidence 99976
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-57 Score=470.28 Aligned_cols=390 Identities=16% Similarity=0.187 Sum_probs=304.5
Q ss_pred CCCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHHH
Q 010568 42 GMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGME 121 (507)
Q Consensus 42 ~~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~l 121 (507)
...|+.++|+++++++||++|+++.+..++.++.++++||+||.++++++|++|+++|+ +||+|+|+++|++++++++|
T Consensus 22 ~~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~l 100 (480)
T 3t5a_A 22 SVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAFL 100 (480)
T ss_dssp --CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHHH
T ss_pred CcccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHHH
Confidence 35789999999999999999999871101334455789999999999999999999996 99999999999999999999
Q ss_pred HHHhcCCEEeeccC---CCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCC-CccEEEEecCCChhhHHHHhhcCc
Q 010568 122 ACNALGLHCVPLYD---TLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTE-HLKTIVSFSKVKPEQREEIEKYGL 197 (507)
Q Consensus 122 A~~~~G~~~v~l~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~ 197 (507)
||+++|++++|+++ .++.+++.++++.++++++|++.+....+......... ....++.++..
T Consensus 101 A~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 167 (480)
T 3t5a_A 101 GALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDLL------------- 167 (480)
T ss_dssp HHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGGGS-------------
T ss_pred HHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEeccc-------------
Confidence 99999999999999 78899999999999999999999887776655433211 11123322211
Q ss_pred eEeeHHHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCC------CcEE
Q 010568 198 AVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTS------EDVY 271 (507)
Q Consensus 198 ~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~------~d~~ 271 (507)
.... ..........++++++|+|||||||.||+|+++|.++..++......+ .+.. +|++
T Consensus 168 --------~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~~~~~~~d~~ 233 (480)
T 3t5a_A 168 --------DLDA-PNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGY-----FADTDGIPPPNSAL 233 (480)
T ss_dssp --------CTTC-C---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHH-----CTTTTTCCCTTEEE
T ss_pred --------cccc-ccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHh-----ccccccCCCCCCeE
Confidence 1101 111223345678999999999999999999999999999888865544 4455 8999
Q ss_pred EEecChHHHHHHHH-HHHHHHcCCEEEEecC-----CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHH
Q 010568 272 VSYLPLAHIFDRAI-EEVFISNGAAIGFWRG-----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKT 345 (507)
Q Consensus 272 l~~~pl~h~~g~~~-~~~~l~~G~~v~l~~~-----~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~ 345 (507)
++.+|++|.+++.. ++.+++.|+++++.+. ++..+++.++++++| +.++|+++..++.......
T Consensus 234 l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~--------- 303 (480)
T 3t5a_A 234 VSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDD--------- 303 (480)
T ss_dssp EECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTG---------
T ss_pred EEeCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCcc---------
Confidence 99999999999865 7888999999999862 889999999999999 8899999988765321100
Q ss_pred HHHHHHHhHHhhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhC------CcEEeeccc
Q 010568 346 LFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVAC------AHVLQGYGL 419 (507)
Q Consensus 346 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~------~~v~~~YG~ 419 (507)
..... ..++||.+++||+++++++.+++.+.++ ..+++.||+
T Consensus 304 ------------------------~~~~~--------~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~ 351 (480)
T 3t5a_A 304 ------------------------DMAGR--------DLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWL 351 (480)
T ss_dssp ------------------------GGTTC--------CCTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEE
T ss_pred ------------------------ccccc--------chhhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhccccccc
Confidence 00011 1148999999999999999999999873 479999999
Q ss_pred ccCccceeccCCCCC------------------------ccCCcccccccCceEEEeecCC-CccccCCCCCCceEEEec
Q 010568 420 TETCAGTFVSLPNEM------------------------SMIGTVGPPVPNVDVCLESVPE-MEYDALSSTPRGEVCVKG 474 (507)
Q Consensus 420 tE~~~~~~~~~~~~~------------------------~~~~s~G~p~pg~~i~ivd~~~-~~~~~~~~g~~Gel~v~g 474 (507)
||++++++....... ....++|+|+| ++++|+| ++ +..+ +.|+.|||+|+|
T Consensus 352 TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~ivd-~~~g~~~--~~g~~GEl~v~g 427 (480)
T 3t5a_A 352 AEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIVD-SDTCIEC--PDGTVGEIWVHG 427 (480)
T ss_dssp TTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEEE-TTTTEEC--CTTBCEEEEEES
T ss_pred cccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEEEEEc-CCCCcCC--CCCCEEEEEEeC
Confidence 999988776654321 23458999999 9999999 65 4444 456999999999
Q ss_pred CCccccccCChhhhhhhc------------ccCceeec-cEEEe
Q 010568 475 STVFSGYYKREDLTKEVM------------VDGWFHTG-MGVWE 505 (507)
Q Consensus 475 ~~v~~gY~~~~~~~~~~~------------~dgw~~TG-lg~~d 505 (507)
|+++.|||++|+.|+++| .+|||+|| +|++|
T Consensus 428 ~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d 471 (480)
T 3t5a_A 428 DNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT 471 (480)
T ss_dssp TTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE
T ss_pred CccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE
Confidence 999999999999999999 35699999 99997
|
| >1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-57 Score=480.38 Aligned_cols=406 Identities=14% Similarity=0.213 Sum_probs=325.0
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHHHH
Q 010568 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (507)
Q Consensus 43 ~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (507)
.+++.++|+++++++||++|+++. +...+..+++||+||.++++++|++|+++|+++||+|+|+++|++++++++||
T Consensus 75 ~n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA 151 (652)
T 1pg4_A 75 LNLAANCLDRHLQENGDRTAIIWE---GDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLA 151 (652)
T ss_dssp ECHHHHHTGGGHHHHTTSEEEEEE---CSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred hhHHHHHHHHHhccCCCceEEEEE---cCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence 367889999999999999999986 43344557899999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCCh---------hHHhhcCCCCC-CCccEEEEecCCChhhHHHH
Q 010568 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKI---------PEMLKTFPKTT-EHLKTIVSFSKVKPEQREEI 192 (507)
Q Consensus 123 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~ 192 (507)
|+++|++++|+++.++.+++.++++++++++||+++... ..+........ ..++.+++++......
T Consensus 152 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~---- 227 (652)
T 1pg4_A 152 CARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDI---- 227 (652)
T ss_dssp HHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCC----
T ss_pred HHHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCcc----
Confidence 999999999999999999999999999999999987542 11222222110 2355677665321100
Q ss_pred hhcCceEeeHHHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhh-hhhhhhhccccCCCCcEE
Q 010568 193 EKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAG-VKCLLESVNEKLTSEDVY 271 (507)
Q Consensus 193 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~-~~~~~~~~~~~~~~~d~~ 271 (507)
.........|++++..... ........++++++|+|||||||.||||+++|.+++..... +.. .+++.++|++
T Consensus 228 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~-----~~~~~~~d~~ 301 (652)
T 1pg4_A 228 DWQEGRDLWWRDLIEKASP-EHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKY-----VFDYHPGDIY 301 (652)
T ss_dssp CCCBTTEEEHHHHHTTSCS-CCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHH-----HTTCCTTCEE
T ss_pred cccCCCceeHHHHHhhcCC-CCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHH-----hcCCCCCCEE
Confidence 0000123568887764422 12233456799999999999999999999999998876643 222 2368899999
Q ss_pred EEecChHHHHHHH-HHHHHHHcCCEEEEecC-----CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHH
Q 010568 272 VSYLPLAHIFDRA-IEEVFISNGAAIGFWRG-----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKT 345 (507)
Q Consensus 272 l~~~pl~h~~g~~-~~~~~l~~G~~v~l~~~-----~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~ 345 (507)
++.+|++|..++. .++.+|+.|+++++.+. ++..+++.|+++++|+++++|++++.+++.....
T Consensus 302 l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~---------- 371 (652)
T 1pg4_A 302 WCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKA---------- 371 (652)
T ss_dssp EECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGG----------
T ss_pred EEccCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccc----------
Confidence 9999999999985 47899999999999863 7899999999999999999999999886521100
Q ss_pred HHHHHHHhHHhhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhC---CcEEeecccccC
Q 010568 346 LFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVAC---AHVLQGYGLTET 422 (507)
Q Consensus 346 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~---~~v~~~YG~tE~ 422 (507)
.... ..++||.+++||+++++++.+++.+.+| +++++.||+||+
T Consensus 372 -------------------------~~~~--------~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~ 418 (652)
T 1pg4_A 372 -------------------------IEGT--------DRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTET 418 (652)
T ss_dssp -------------------------TTTC--------CCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGG
T ss_pred -------------------------cccC--------CcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCccc
Confidence 0000 1148999999999999999999999887 899999999999
Q ss_pred ccceeccCCCC-CccCCcccccccCceEEEeecCCCccccCCCCCCceEEEec--CCccccccCChhhhhhhc---ccCc
Q 010568 423 CAGTFVSLPNE-MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKG--STVFSGYYKREDLTKEVM---VDGW 496 (507)
Q Consensus 423 ~~~~~~~~~~~-~~~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g--~~v~~gY~~~~~~~~~~~---~dgw 496 (507)
++.++...+.. ...++++|+|+||++++|+| ++++.++. |+.|||+|+| |+++.|||++++.+.+.| .+||
T Consensus 419 ~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d-~~g~~v~~--g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~ 495 (652)
T 1pg4_A 419 GGFMITPLPGAIELKAGSATRPFFGVQPALVD-NEGHPQEG--ATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNM 495 (652)
T ss_dssp SSCSBCCCTTTCCBCTTCCBSBCTTCCEEEEC-TTCCBCCS--SEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTS
T ss_pred ccceecCCCCCcCccCCccccCcCCCeEEEEC-CCCCCcCC--CceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCE
Confidence 98766654432 34568999999999999999 87776554 5899999999 789999999999988877 3899
Q ss_pred eeec-cEEEecC
Q 010568 497 FHTG-MGVWEQL 507 (507)
Q Consensus 497 ~~TG-lg~~d~d 507 (507)
|+|| +|++|+|
T Consensus 496 y~TGDlg~~d~d 507 (652)
T 1pg4_A 496 YFSGDGARRDED 507 (652)
T ss_dssp EEEEEEEEECTT
T ss_pred EECCcEEEEcCC
Confidence 9999 9999986
|
| >4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-57 Score=474.50 Aligned_cols=373 Identities=17% Similarity=0.176 Sum_probs=307.9
Q ss_pred CCCCCCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHH
Q 010568 39 PIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWII 118 (507)
Q Consensus 39 ~~~~~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~ 118 (507)
..+...++.++|+++++++||++|+++. + +++||+||.++++++|++|+++|+++||+|+|+++|++++++
T Consensus 70 ~~~~~~~l~~~l~~~a~~~pd~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~ 140 (570)
T 4gr5_A 70 RAPAGACVHELFEAQAARAPDAVALLHE---A------DELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVV 140 (570)
T ss_dssp CCCCSCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHH
T ss_pred cCCccCCHHHHHHHHHHHCCCCeEEECC---C------CcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHH
Confidence 3456789999999999999999999864 2 579999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCce
Q 010568 119 GMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLA 198 (507)
Q Consensus 119 ~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 198 (507)
++|||+++|++++|++|.++.+++.++++.++++++|++......+ .....+...+..
T Consensus 141 ~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~--------~~~~~~~~~~~~-------------- 198 (570)
T 4gr5_A 141 ALLAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRL--------TGTTTLYVEDEA-------------- 198 (570)
T ss_dssp HHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSS--------CSSEEEECCC----------------
T ss_pred HHHHHHHHCCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhcc--------cCCcceeeeccc--------------
Confidence 9999999999999999999999999999999999999987643221 112222211110
Q ss_pred EeeHHHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChH
Q 010568 199 VYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLA 278 (507)
Q Consensus 199 ~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~ 278 (507)
.. ............++++++|+|||||||.||+|+++|.++.+.... ....++..+|++++.+|++
T Consensus 199 -------~~-~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~------~~~~~~~~~d~~l~~~p~~ 264 (570)
T 4gr5_A 199 -------AS-DAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG------QDYAGFGPDEVFLQCSPVS 264 (570)
T ss_dssp -------------CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS------CCSSCCSTTCEEEECSCTT
T ss_pred -------cc-cccccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh------hhhcCCCCCCEEEEecCcc
Confidence 00 001112233457899999999999999999999999999776554 2233678899999999999
Q ss_pred HHHHHHHHHHHHHcCCEEEEecC---CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhHH
Q 010568 279 HIFDRAIEEVFISNGAAIGFWRG---DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKF 355 (507)
Q Consensus 279 h~~g~~~~~~~l~~G~~v~l~~~---~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (507)
|..+...++.+++.|+++++.+. ++..+++.|+++++|+++++|++++.+++.....
T Consensus 265 ~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~-------------------- 324 (570)
T 4gr5_A 265 WDAFGLELFGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPEA-------------------- 324 (570)
T ss_dssp SSTHHHHHHHHHTTTCEEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGGG--------------------
T ss_pred HHHHHHHHHHHHhcCCEEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhchhh--------------------
Confidence 87777778889999999999763 8999999999999999999999999986531110
Q ss_pred hhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhh-CCcEEeecccccCccceeccCCCC-
Q 010568 356 HNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVSLPNE- 433 (507)
Q Consensus 356 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~- 433 (507)
+ ++||.+++||++++.++.+.+.+.+ ++++++.||+||++++++......
T Consensus 325 --------------------~--------~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~ 376 (570)
T 4gr5_A 325 --------------------F--------EGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAG 376 (570)
T ss_dssp --------------------G--------TTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCGG
T ss_pred --------------------C--------CCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeeeeeeeccc
Confidence 1 3799999999999999988888876 789999999999988766543322
Q ss_pred --CccCCcccccccCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhc-cc--------Cceeec-c
Q 010568 434 --MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VD--------GWFHTG-M 501 (507)
Q Consensus 434 --~~~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~-~d--------gw~~TG-l 501 (507)
.....++|+|+||++++|+| +++..++. |+.|||+|+|++++.|||++|+.|+++| .| |||+|| +
T Consensus 377 ~~~~~~~~iG~p~~~~~v~i~d-~~~~~~~~--G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDl 453 (570)
T 4gr5_A 377 DLSGTALPIGVPLAGKRAYVLD-DDLKPAAN--GALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDL 453 (570)
T ss_dssp GTTSSSCCCBEECTTEEEEEEC-TTSCBCCT--TCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEE
T ss_pred ccCCCccccceeeCCCEEEEEC-CCCCCCCC--CCcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCCCe
Confidence 22346799999999999999 87766554 5999999999999999999999999999 43 699999 9
Q ss_pred EEEecC
Q 010568 502 GVWEQL 507 (507)
Q Consensus 502 g~~d~d 507 (507)
|++|+|
T Consensus 454 g~~d~d 459 (570)
T 4gr5_A 454 ARRRAD 459 (570)
T ss_dssp EEECTT
T ss_pred EEECCC
Confidence 999986
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-57 Score=468.77 Aligned_cols=393 Identities=17% Similarity=0.216 Sum_probs=312.1
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHH
Q 010568 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120 (507)
Q Consensus 41 ~~~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~ 120 (507)
..++++.++|+++++ +||++|+++. + +++||+||.++++++|++|+++|+++||+|+|+++|++++++++
T Consensus 21 ~~~~~~~~~l~~~~~-~p~~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~ 90 (529)
T 2v7b_A 21 ALFNFAAYLFRLNET-RAGKTAYIDD---T------GSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAF 90 (529)
T ss_dssp -CCCHHHHHHHHTGG-GTTSEEEECS---S------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHH
T ss_pred cceeHHHHHHHhhhc-cCCceEEEeC---C------CCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHH
Confidence 455679999999999 9999999853 2 46999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCc-cEEEEecCCChhhHHHHhhcCceE
Q 010568 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHL-KTIVSFSKVKPEQREEIEKYGLAV 199 (507)
Q Consensus 121 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~ 199 (507)
|||+++|++++|+++.++.+++.++++.++++++|++.+....+....... ... ..++.++..... ....
T Consensus 91 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--------~~~~ 161 (529)
T 2v7b_A 91 LGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESA-EHDGCQLIVSQPRESE--------PRLA 161 (529)
T ss_dssp HHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC----CCEEEEECC--------------CC
T ss_pred HHHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhc-cccCceEEEecccccc--------cccc
Confidence 999999999999999999999999999999999999987655443332111 222 344444432110 0012
Q ss_pred eeHHHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHH-HHHHhhhhhhhhhccccCCCCcEEEEecChH
Q 010568 200 YSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENI-VTFIAGVKCLLESVNEKLTSEDVYVSYLPLA 278 (507)
Q Consensus 200 ~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l-~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~ 278 (507)
..++++...... ........++++++++|||||||.||+|.++|.++ ...... .....++.++|++++.+|++
T Consensus 162 ~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~-----~~~~~~~~~~d~~~~~~p~~ 235 (529)
T 2v7b_A 162 PLFEELIDAAAP-AAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELY-----AKPILGIAENDVVFSAAKLF 235 (529)
T ss_dssp CBHHHHHHTSCC-CSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHT-----CCCCCCCCTTCEEEESSCTT
T ss_pred cchhhhhccCCC-cccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHH-----hhhccCCCCCcEEEEeecHH
Confidence 356666653321 22233457899999999999999999999999999 555544 23334788999999999999
Q ss_pred HHHHHHH-HHHHHHcCCEEEEec-C-CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhHH
Q 010568 279 HIFDRAI-EEVFISNGAAIGFWR-G-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKF 355 (507)
Q Consensus 279 h~~g~~~-~~~~l~~G~~v~l~~-~-~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (507)
|.+++.. ++.++..|+++++.+ . ++..+++.++++++|+++++|+++..++....
T Consensus 236 ~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~---------------------- 293 (529)
T 2v7b_A 236 FAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPN---------------------- 293 (529)
T ss_dssp SHHHHHHHTHHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTT----------------------
T ss_pred HHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcc----------------------
Confidence 9999876 667899999999873 3 99999999999999999999999988754100
Q ss_pred hhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhCCcEEeecccccCccceeccCCCCCc
Q 010568 356 HNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMS 435 (507)
Q Consensus 356 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~ 435 (507)
.+... ..++|.+++||+++++++.+.+++.+++++++.||+||++.+++...... .
T Consensus 294 ------------~~~~~-----------~~~lr~~~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~-~ 349 (529)
T 2v7b_A 294 ------------LPARA-----------DVAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGA-V 349 (529)
T ss_dssp ------------CCCGG-----------GCCCCEEEECSSCCCHHHHHHHHHHHSCCEEEEEECTTTSSEEEECCTTC-C
T ss_pred ------------ccccc-----------CCceEEEEEcCCCCCHHHHHHHHHHhCCceeeeEchhhcCceeeccccCC-C
Confidence 00000 02799999999999999999999989999999999999977666554443 3
Q ss_pred cCCcccccccCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhcccCceeec-cEEEecC
Q 010568 436 MIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG-MGVWEQL 507 (507)
Q Consensus 436 ~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~dgw~~TG-lg~~d~d 507 (507)
..+++|+|+||++++|+| ++++.++ .|+.|||+|+|++++.|||++++.+...|.+|||+|| +|++|+|
T Consensus 350 ~~~~~G~p~~~~~~~i~d-~~g~~~~--~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~~~~~TGDl~~~~~~ 419 (529)
T 2v7b_A 350 EYGTTGRPVPGYEIELRD-EAGHAVP--DGEVGDLYIKGPSAAVMYWNNREKSRATFLGEWIRSGDKYCRLPN 419 (529)
T ss_dssp CTTSCCEECTTCEEEEEC-TTSCBCC--TTSCEEEEEECTTCCCCBTTCHHHHHHHEETTEEEEEEEEEECTT
T ss_pred ccCCcccCCCCCEEEEEC-CCCCCCC--CCCccEEEEecCCcccccCCChHHHHHhhhcCCcccCceEEECCC
Confidence 448999999999999999 8777655 4599999999999999999999999999999999999 9999976
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-57 Score=466.55 Aligned_cols=382 Identities=23% Similarity=0.313 Sum_probs=306.0
Q ss_pred HHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHHHHHHhcC
Q 010568 48 DVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALG 127 (507)
Q Consensus 48 ~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G 127 (507)
++|++.++++||++++.... +++ +++||+||.++++++|++|+++|+++||+|+|+++|++++++++|||+++|
T Consensus 4 ~l~~~~a~~~p~~~a~~~~~--~~~----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G 77 (503)
T 4fuq_A 4 NLFARLFDKLDDPHKLAIET--AAG----DKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAG 77 (503)
T ss_dssp CHHHHHHSCCSCTTSEEEEE--TTC----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTT
T ss_pred hHHHHHHHhCCCCceEEEec--CCC----cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence 57889999999999998641 122 579999999999999999999999999999999999999999999999999
Q ss_pred CEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCceEeeHHHHHh
Q 010568 128 LHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQ 207 (507)
Q Consensus 128 ~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 207 (507)
++++|++|.++.+++.++++.++++++|++.+....+....... . ..+..++.... ..+.+...
T Consensus 78 a~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~-------------~~~~~~~~ 141 (503)
T 4fuq_A 78 GVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKV-G--ATVETLGPDGR-------------GSLTDAAA 141 (503)
T ss_dssp CEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHH-T--CEEEECCTTSC-------------SHHHHHHH
T ss_pred cEEEecCCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhc-C--ceEEEecCCcc-------------cccchhhh
Confidence 99999999999999999999999999999876543322221110 1 13333332111 11222222
Q ss_pred ccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHH-H
Q 010568 208 LGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAI-E 286 (507)
Q Consensus 208 ~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~-~ 286 (507)
.. ..........++++++|+|||||||.||+|.++|.++.+.+..+...+ ++.++|++++.+|++|.+++.. .
T Consensus 142 ~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~~~~~p~~~~~g~~~~~ 215 (503)
T 4fuq_A 142 GA-SEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYW-----RFTPDDVLIHALPIYHTHGLFVAS 215 (503)
T ss_dssp TS-CSCCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCSSSHCCCCCCH
T ss_pred cC-CCCcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHh-----CCCCCCEEEEeCChHHHHHHHHHH
Confidence 11 112223345789999999999999999999999999999988865544 7889999999999999999765 6
Q ss_pred HHHHHcCCEEEEecC-CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhHHhhhhcCCCCC
Q 010568 287 EVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHV 365 (507)
Q Consensus 287 ~~~l~~G~~v~l~~~-~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 365 (507)
+.+++.|+++++.+. ++..+++.++ ++|+++++|+++..+++...
T Consensus 216 ~~~l~~g~~~~~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~-------------------------------- 261 (503)
T 4fuq_A 216 NVTLFARGSMIFLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQSPR-------------------------------- 261 (503)
T ss_dssp HHHHHTTCEEEECSSCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTT--------------------------------
T ss_pred HHHHHhCCEEEEcCCCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCC--------------------------------
Confidence 778999999998876 9999999998 89999999999998864210
Q ss_pred CCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhCCcEEeecccccCccceeccCCCCCccCCccccccc
Q 010568 366 EASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVP 445 (507)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~s~G~p~p 445 (507)
.... ..+++|.+++||+++++++.+.+.+.++.++++.||+||++..+... ......++++|+|+|
T Consensus 262 -----~~~~--------~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~-~~~~~~~~~~G~p~~ 327 (503)
T 4fuq_A 262 -----LTKE--------TTGHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNTSNP-YDGDRVPGAVGPALP 327 (503)
T ss_dssp -----CSTT--------TTTTCCEEEECSSCCCHHHHHHHHHHHSCCEEECCEETTTEECBCCC-SSSCCCTTEEEEBCT
T ss_pred -----cccc--------chhhcEEEEECCCCCCHHHHHHHHHHhCCCccceEcccccCcccccC-CCCCCcCCccccCCC
Confidence 0000 11379999999999999999999999999999999999998765433 333444589999999
Q ss_pred CceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhc-ccCceeec-cEEEecC
Q 010568 446 NVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTG-MGVWEQL 507 (507)
Q Consensus 446 g~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~-~dgw~~TG-lg~~d~d 507 (507)
|++++|+|.++++.+ +.|+.|||+|+|++++.|||++|+.+.++| .||||+|| +|++|+|
T Consensus 328 ~~~~~i~d~~~g~~~--~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~d 389 (503)
T 4fuq_A 328 GVSARVTDPETGKEL--PRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDER 389 (503)
T ss_dssp TCEEEEECTTTCCBC--CTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECTT
T ss_pred CeEEEEEECCCCCCC--cCCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcCC
Confidence 999999994444444 456999999999999999999999999999 69999999 9999986
|
| >1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-56 Score=476.69 Aligned_cols=408 Identities=17% Similarity=0.208 Sum_probs=325.4
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHH-HCCCCCCCEEEEEeCCchhhHHHHH
Q 010568 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIR-TCGVEERGKCGIYGVNCPEWIIGME 121 (507)
Q Consensus 43 ~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~-~~gv~~gd~V~i~~~n~~~~~~~~l 121 (507)
.+++.++|+++++++||++|+++. +...+..+++||+||.++++++|+.|+ ++|+++||+|+|+++|++++++++|
T Consensus 81 ~n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~l 157 (663)
T 1ry2_A 81 LNACYNCVDRHALKTPNKKAIIFE---GDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLL 157 (663)
T ss_dssp ECHHHHHTHHHHTTCTTSEEEEEE---CSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHH
T ss_pred ccHHHHHHHHHhccCCCceEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHH
Confidence 368899999999999999999986 433344578999999999999999999 9999999999999999999999999
Q ss_pred HHHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChh---------HHhhcCCCCCCCccEEEEecCCChhhHHHH
Q 010568 122 ACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIP---------EMLKTFPKTTEHLKTIVSFSKVKPEQREEI 192 (507)
Q Consensus 122 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 192 (507)
||+++|++++|+++.++.+++.++++++++++||+++.... .+.+..... +.++.+++++.......
T Consensus 158 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vi~~~~~~~~~~--- 233 (663)
T 1ry2_A 158 AISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRET-PGVRHVLVYRKTNNPSV--- 233 (663)
T ss_dssp HHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSC-TTCCEEEEECSSCCSSC---
T ss_pred HHHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhC-CCCceEEEEecCCCCcc---
Confidence 99999999999999999999999999999999999876421 222333222 45667777654211000
Q ss_pred hhcCceEeeHHHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEE
Q 010568 193 EKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYV 272 (507)
Q Consensus 193 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l 272 (507)
.........|++++..... ........++++++|+|||||||.||||+++|.+++....... ...+++..+|+++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~----~~~~~~~~~d~~~ 308 (663)
T 1ry2_A 234 AFHAPRDLDWATEKKKYKT-YYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTM----RYTFDTHQEDVFF 308 (663)
T ss_dssp CCCSSSEEEHHHHHTTSCS-CCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHH----HHHSCCCSSCEEE
T ss_pred ccCCCccccHHHHHhhcCC-CCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHH----HHhcCCCCCcEEE
Confidence 0001124568777764321 2233445689999999999999999999999999877654321 1223688999999
Q ss_pred EecChHHHHHHH-HHHHHHHcCCEEEEecC-----CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHH
Q 010568 273 SYLPLAHIFDRA-IEEVFISNGAAIGFWRG-----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTL 346 (507)
Q Consensus 273 ~~~pl~h~~g~~-~~~~~l~~G~~v~l~~~-----~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~ 346 (507)
+.+|++|..+.. .++.+++.|+++++.+. ++..+++.|+++++|+++++|++++.+.+....
T Consensus 309 ~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~------------ 376 (663)
T 1ry2_A 309 TAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDS------------ 376 (663)
T ss_dssp ECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTT------------
T ss_pred EcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCcc------------
Confidence 999999999985 47899999999999863 789999999999999999999999987531100
Q ss_pred HHHHHHhHHhhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhC---CcEEeecccccCc
Q 010568 347 FNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVAC---AHVLQGYGLTETC 423 (507)
Q Consensus 347 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~---~~v~~~YG~tE~~ 423 (507)
..+..+ .++||.+++||+++++++.+++.+.+| +++++.||+||++
T Consensus 377 -----------------------~~~~~~--------l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~ 425 (663)
T 1ry2_A 377 -----------------------YIENHS--------LKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESG 425 (663)
T ss_dssp -----------------------SSSSCC--------CTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTC
T ss_pred -----------------------ccccCC--------cCceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCcccc
Confidence 000011 148999999999999999999999887 8999999999998
Q ss_pred cceeccCC--CCCccCCcccccccCceEEEeecC-CCccccCCCCCCceEEEec--CCccccccCChhhhhhhc-c--cC
Q 010568 424 AGTFVSLP--NEMSMIGTVGPPVPNVDVCLESVP-EMEYDALSSTPRGEVCVKG--STVFSGYYKREDLTKEVM-V--DG 495 (507)
Q Consensus 424 ~~~~~~~~--~~~~~~~s~G~p~pg~~i~ivd~~-~~~~~~~~~g~~Gel~v~g--~~v~~gY~~~~~~~~~~~-~--dg 495 (507)
+.++...+ .....++++|+|+||++++|+| + +++.++. .|+.|||+|+| |+++.|||++++.+.+.| . +|
T Consensus 426 ~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d-~~~g~~v~~-~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~g 503 (663)
T 1ry2_A 426 SHLVTPLAGGVTPMKPGSASFPFFGIDAVVLD-PNTGEELNT-SHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPG 503 (663)
T ss_dssp SCSEECCTTTCCCCCTTCCCEECTTCCEEEEC-SSSTTCEEC-SSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTT
T ss_pred CeeeccCCCCCcccCCCccccCcCCCeEEEEc-CCCCCcCCC-CCcceEEEEecCCCchhcccccChHHHHHhhhcCCCC
Confidence 77665543 2234568999999999999999 6 6665544 25899999999 589999999999998887 3 89
Q ss_pred ceeec-cEEEecC
Q 010568 496 WFHTG-MGVWEQL 507 (507)
Q Consensus 496 w~~TG-lg~~d~d 507 (507)
||+|| +|++|+|
T Consensus 504 ~y~TGDlg~~d~d 516 (663)
T 1ry2_A 504 YYFTGDGAAKDKD 516 (663)
T ss_dssp SEEEEEEEEECTT
T ss_pred EEEcCCEEEEcCC
Confidence 99999 9999986
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-56 Score=466.34 Aligned_cols=377 Identities=18% Similarity=0.242 Sum_probs=305.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCch
Q 010568 35 GFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCP 114 (507)
Q Consensus 35 ~~~~~~~~~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~ 114 (507)
......+...|+.++|+++++++||++|+++. + +++||+||.++++++|++|+++|+++||+|+|+++|++
T Consensus 30 ~~~~~~~~~~~l~~~l~~~a~~~p~~~Al~~~----~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~ 100 (563)
T 1amu_A 30 NTKAEYPRDKTIHQLFEEQVSKRPNNVAIVCE----N-----EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSI 100 (563)
T ss_dssp CCCCCCCTTCCHHHHHHHHHHHCTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSH
T ss_pred CCCCCCCCCCcHHHHHHHHHHHCCCCeEEEeC----C-----ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCH
Confidence 33334455689999999999999999999853 2 57999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhh
Q 010568 115 EWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEK 194 (507)
Q Consensus 115 ~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 194 (507)
++++++|||+++|++++|++|.++.+++.++++.++++++|++.+....+..... ...+..++...
T Consensus 101 e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~~~-----~~~~~~~~~~~--------- 166 (563)
T 1amu_A 101 DLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQF-----NGQVEIFEEDT--------- 166 (563)
T ss_dssp HHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCC-----CSEEEECCCST---------
T ss_pred HHHHHHHHHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhccc-----cCceeeecchh---------
Confidence 9999999999999999999999999999999999999999998765544332211 11233222110
Q ss_pred cCceEeeHHHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEe
Q 010568 195 YGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSY 274 (507)
Q Consensus 195 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~ 274 (507)
+.. . ..........++++++|+|||||||.||+|+++|.++.+.+..+... +++..+|++++.
T Consensus 167 ----------~~~-~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~-----~~~~~~d~~l~~ 229 (563)
T 1amu_A 167 ----------IKI-R-EGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENS-----LNVTEKDRIGQF 229 (563)
T ss_dssp ----------TTT-S-CCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHT-----SCCCTTCEEEEC
T ss_pred ----------hcc-c-cCccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHh-----cCCCCCCEEEEe
Confidence 000 0 01111233467899999999999999999999999999887774433 378899999999
Q ss_pred cChHHHHHHHHHHHHHHcCCEEEEecC----CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHH
Q 010568 275 LPLAHIFDRAIEEVFISNGAAIGFWRG----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIA 350 (507)
Q Consensus 275 ~pl~h~~g~~~~~~~l~~G~~v~l~~~----~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 350 (507)
+|++|..++..++.+++.|+++++.+. ++..+++.++++++|+++++|+++..+...
T Consensus 230 ~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~------------------- 290 (563)
T 1amu_A 230 ASISFDASVWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE------------------- 290 (563)
T ss_dssp SCTTSTHHHHHHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT-------------------
T ss_pred CCccHHHHHHHHHHHHHCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc-------------------
Confidence 999999998888889999999998763 889999999999999999999998765210
Q ss_pred HHhHHhhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhCCcEEeecccccCccceeccC
Q 010568 351 YSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSL 430 (507)
Q Consensus 351 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~~~v~~~YG~tE~~~~~~~~~ 430 (507)
..+++|.+++||+++++++.+.+.+ .+++++.||+||++.+++...
T Consensus 291 --------------------------------~~~~lr~~~~gG~~l~~~~~~~~~~--~~~~~~~YG~TE~~~~~~~~~ 336 (563)
T 1amu_A 291 --------------------------------RILSIQTLITAGSATSPSLVNKWKE--KVTYINAYGPTETTICATTWV 336 (563)
T ss_dssp --------------------------------TCCSCSEEEEESSCCCHHHHHHHTT--TSEEEEEECCGGGSSCSEEEE
T ss_pred --------------------------------ccccccEEEEEEecCCHHHHHHHHh--CCeEEEEECcCHHhHhheeee
Confidence 0137999999999999999999887 478999999999987766543
Q ss_pred CCC--CccCCcccccccCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhcc-------cCceeec-
Q 010568 431 PNE--MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV-------DGWFHTG- 500 (507)
Q Consensus 431 ~~~--~~~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~-------dgw~~TG- 500 (507)
... .....++|+|+||++++|+| ++++.++. |+.|||+|+|++++.|||++|+.|+++|. +|||+||
T Consensus 337 ~~~~~~~~~~~vG~p~~~~~v~i~d-~~~~~~~~--g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGD 413 (563)
T 1amu_A 337 ATKETIGHSVPIGAPIQNTQIYIVD-ENLQLKSV--GEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGD 413 (563)
T ss_dssp CCSSCCCSSCCCBEECTTEEEEEEC-TTSCBCCT--TCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEE
T ss_pred cccccCCCCCcccceeCCCEEEEEC-CCcCCCCC--CCcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCC
Confidence 322 22447899999999999999 87766554 59999999999999999999999999993 2599999
Q ss_pred cEEEecC
Q 010568 501 MGVWEQL 507 (507)
Q Consensus 501 lg~~d~d 507 (507)
+|++|+|
T Consensus 414 lg~~d~d 420 (563)
T 1amu_A 414 QARWLSD 420 (563)
T ss_dssp EEEECTT
T ss_pred EEEEcCC
Confidence 9999986
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-56 Score=469.67 Aligned_cols=391 Identities=15% Similarity=0.185 Sum_probs=320.2
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHH
Q 010568 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120 (507)
Q Consensus 41 ~~~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~ 120 (507)
....|+.++|+++++ ||++|+++. + +++||+||.++++++|++|++.|+++||+|+++++|++++++++
T Consensus 24 ~~~~~l~~~~~~~a~--pd~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~ 92 (617)
T 3rg2_A 24 WQDLPLTDILTRHAA--SDSIAVIDG---E------RQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITF 92 (617)
T ss_dssp CCCCCTTHHHHTTTT--CCSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred CCcCCHHHHHHHhhC--CCCeEEecC---C------ceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHH
Confidence 345789999999887 999999864 2 57999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChh----HHhhcCCCCCCCccEEEEecCCChhhHHHHhhcC
Q 010568 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIP----EMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYG 196 (507)
Q Consensus 121 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 196 (507)
|||+++|++++|++|..+.+++.++++.++++++|++..... ..........+.++.+..++....
T Consensus 93 lA~l~aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 162 (617)
T 3rg2_A 93 FALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGE---------- 162 (617)
T ss_dssp HHHHHHTCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCCST----------
T ss_pred HHHHhcCeEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeecccccc----------
Confidence 999999999999999999999999999999999999986531 111111111134445554443321
Q ss_pred ceEeeHHHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecC
Q 010568 197 LAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLP 276 (507)
Q Consensus 197 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~p 276 (507)
..+.+....... ........++++++|+|||||||.||+|+++|.++.+.+......+ ++..++++++.+|
T Consensus 163 ---~~~~~~~~~~~~-~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~~~~l~~~p 233 (617)
T 3rg2_A 163 ---HNLQDAINHPAE-DFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEIC-----QFTQQTRYLCAIP 233 (617)
T ss_dssp ---TBHHHHHHSCCS-SCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECSC
T ss_pred ---cchhhhhccccc-ccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhc-----CCCCcceEEEecc
Confidence 133444433322 2223445679999999999999999999999999999998866555 7889999999999
Q ss_pred hHHHHHHHH--HHHHHHcCCEEEEecC-CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHh
Q 010568 277 LAHIFDRAI--EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSY 353 (507)
Q Consensus 277 l~h~~g~~~--~~~~l~~G~~v~l~~~-~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (507)
++|.+++.. ++.++..|+++++.+. ++..+++.++++++|++.++|+++..+++.........
T Consensus 234 ~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~-------------- 299 (617)
T 3rg2_A 234 AAHNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRA-------------- 299 (617)
T ss_dssp TTSHHHHHSSHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTT--------------
T ss_pred chhhhhhhHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccc--------------
Confidence 999999874 7888999999999876 89999999999999999999999999876543221100
Q ss_pred HHhhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhCCcEEeecccccCccceeccCCCC
Q 010568 354 KFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNE 433 (507)
Q Consensus 354 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~ 433 (507)
..+++|.+++||+++++++.+.+.+.+++++++.||+||++..++......
T Consensus 300 -----------------------------~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~ 350 (617)
T 3rg2_A 300 -----------------------------QLASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRLDDSA 350 (617)
T ss_dssp -----------------------------TTTTCCEEEEESSCCCHHHHHHHHHHTCSEEEEEEEETTEEEEECCTTSCH
T ss_pred -----------------------------cCCCccEEEEcCCcCCHHHHHHHHHHhCCcEEEEeccCcceeecccCCCcc
Confidence 013799999999999999999999989999999999999986555443332
Q ss_pred CccCCcccccc-cCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhc-ccCceeec-cEEEecC
Q 010568 434 MSMIGTVGPPV-PNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTG-MGVWEQL 507 (507)
Q Consensus 434 ~~~~~s~G~p~-pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~-~dgw~~TG-lg~~d~d 507 (507)
.....++|+|+ ++++++|+| ++++.++. |+.|||+|+|++++.|||++|+.|+++| .+|||+|| +|++|+|
T Consensus 351 ~~~~~~~G~p~~~~~~~~i~d-~~~~~~p~--G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~d 424 (617)
T 3rg2_A 351 EKIIHTQGYPMCPDDEVWVAD-AEGNPLPQ--GEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPE 424 (617)
T ss_dssp HHHHHCCCEESCTTCEEEEEC-TTSCBCCT--TCCEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEECTT
T ss_pred cccccCCCccCCCCceEEEEC-CCCCCCCC--CCceEEEecCccccchhcCChhhhhhccCCCCceecCceEEEcCC
Confidence 33346899997 788999999 87776555 5999999999999999999999999999 79999999 9999976
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-56 Score=468.59 Aligned_cols=370 Identities=16% Similarity=0.141 Sum_probs=305.0
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHH
Q 010568 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120 (507)
Q Consensus 41 ~~~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~ 120 (507)
....|+.++|+++++++||++|+++. + +++||+||.++++++|++|++.|+++||+|+|+++|++++++++
T Consensus 24 ~~~~tl~~~~~~~a~~~Pd~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~ 94 (620)
T 4dg8_A 24 YAHPTVVARFSEMAALHPHREAIRDR---F------GSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCL 94 (620)
T ss_dssp GGSCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCCCeEEEcC---C------CcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence 45689999999999999999999864 3 57999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCceEe
Q 010568 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVY 200 (507)
Q Consensus 121 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 200 (507)
|||+++|++++|++|.++.+++.+++++++++++|++....... .....+
T Consensus 95 lailkaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~--------~~~~~~---------------------- 144 (620)
T 4dg8_A 95 LAILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPA--------NGLPCV---------------------- 144 (620)
T ss_dssp HHHHHTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCC--------TTSCEE----------------------
T ss_pred HHHHHhCCEEEeeCccChHHHHHHHHHhCCCcEEEecCcccccc--------cCCcee----------------------
Confidence 99999999999999999999999999999999999765432211 111111
Q ss_pred eHHHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHH
Q 010568 201 SWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHI 280 (507)
Q Consensus 201 ~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~ 280 (507)
.+..+. ........+...++++++|+|||||||.||+|+++|.++.+.+.. .. ...+.++|++++.+|++|.
T Consensus 145 ~~~~~~--~~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~-----~~~~~~~d~~l~~~p~~~~ 216 (620)
T 4dg8_A 145 PVRHLP--AAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QS-----FLAFAPQMRFLVNSPLSFD 216 (620)
T ss_dssp EGGGCC--CCCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CG-----GGTTCTTCEEEECSCTTST
T ss_pred eeccCC--cCCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HH-----hhCCCCCCEEEEECccCHH
Confidence 010000 001112223446899999999999999999999999999876654 22 2368899999999999999
Q ss_pred HHHHHHHHHHHcCCEEEEecC---CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhHHhh
Q 010568 281 FDRAIEEVFISNGAAIGFWRG---DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHN 357 (507)
Q Consensus 281 ~g~~~~~~~l~~G~~v~l~~~---~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (507)
.++..++.++..|+++++.+. ++..+++.|+++++|+++++|++++.+++....
T Consensus 217 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~----------------------- 273 (620)
T 4dg8_A 217 AATLEIWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDPD----------------------- 273 (620)
T ss_dssp HHHHHHHHHHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCGG-----------------------
T ss_pred HHHHHHHHHHhcCCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcChh-----------------------
Confidence 999889999999999999752 899999999999999999999999988642000
Q ss_pred hhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhh-CCcEEeecccccCccceeccCCCC---
Q 010568 358 LKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVSLPNE--- 433 (507)
Q Consensus 358 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~--- 433 (507)
..++||.+++||++++.++.+.+.+.+ +++++|.||+||++.+++......
T Consensus 274 -------------------------~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~ 328 (620)
T 4dg8_A 274 -------------------------CLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDL 328 (620)
T ss_dssp -------------------------GGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCTGGG
T ss_pred -------------------------hCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheEEEecccccc
Confidence 013799999999999998888777665 789999999999988766543322
Q ss_pred CccCCcccccccCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhccc--------Cceeec-cEEE
Q 010568 434 MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVD--------GWFHTG-MGVW 504 (507)
Q Consensus 434 ~~~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~d--------gw~~TG-lg~~ 504 (507)
.....++|+|++|++++|+| +++... ++.|+.|||+|+|+++++|||++|+.|+++|.+ +||+|| +|++
T Consensus 329 ~~~~~~iG~p~~~~~~~i~d-~~~~~~-~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~ 406 (620)
T 4dg8_A 329 EEDDIPIGKAIAGTAVLLLD-EHGQEI-AEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARY 406 (620)
T ss_dssp GSSSCCCBEECTTEEEEEEC-TTSCBC-CSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEE
T ss_pred CCCCCCceecccCcEEEEEC-ccCCCC-CCCCCceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEE
Confidence 23347899999999999999 777652 335699999999999999999999999999933 799999 9999
Q ss_pred ecC
Q 010568 505 EQL 507 (507)
Q Consensus 505 d~d 507 (507)
|+|
T Consensus 407 ~~d 409 (620)
T 4dg8_A 407 DEQ 409 (620)
T ss_dssp CTT
T ss_pred CCC
Confidence 986
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-56 Score=494.35 Aligned_cols=422 Identities=24% Similarity=0.311 Sum_probs=330.9
Q ss_pred CCCCCCCceeecCccCCCCCCCCCCCCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHH
Q 010568 18 GGRPSIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRT 97 (507)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~ 97 (507)
.+.+..+.+|++.... ...+...|+.++|+++++++||++|+++. +.. +++||+||.++++++|++|++
T Consensus 39 ~~~~~~~~~~~~~~~~----~~~p~~~tl~~~l~~~a~~~pd~~Al~~~---~~~----~~~TY~eL~~~~~~lA~~L~~ 107 (979)
T 3tsy_A 39 SNNNNSDVIFRSKLPD----IYIPNHLSLHDYIFQNISEFATKPCLING---PTG----HVYTYSDVHVISRQIAANFHK 107 (979)
T ss_dssp ------CCCBCCSSCC----CCCCTTSCHHHHHTTTGGGTTTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCceeecCCCC----CCCCCCCCHHHHHHHHHHhCCCCeEEEEC---CCC----cEEEHHHHHHHHHHHHHHHHH
Confidence 3344556677776433 22345689999999999999999999864 322 579999999999999999999
Q ss_pred CCCCCCCEEEEEeCCchhhHHHHHHHHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccE
Q 010568 98 CGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKT 177 (507)
Q Consensus 98 ~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~ 177 (507)
+|+++||+|+|+++|++++++++|||+++|++++|++|.++.+++.++++.++++++|++......+...... .. ..
T Consensus 108 ~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~--~~-~~ 184 (979)
T 3tsy_A 108 LGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQND--DG-VV 184 (979)
T ss_dssp TTCCTTCEEEEECSSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHT--SC-CE
T ss_pred cCCCCcCEEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhc--CC-ce
Confidence 9999999999999999999999999999999999999999999999999999999999998765544332211 11 23
Q ss_pred EEEecCCChhhHHHHhhcCceEeeHHHHHhcccc--CCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhh
Q 010568 178 IVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGEN--KQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVK 255 (507)
Q Consensus 178 v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~ 255 (507)
++.++..... ........++++...... .........++++++|+|||||||.||+|+++|+++...+....
T Consensus 185 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~ 258 (979)
T 3tsy_A 185 IVCIDDNESV------PIPEGCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQV 258 (979)
T ss_dssp EEECCCCTTS------CCCTTEEEGGGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHH
T ss_pred EEEeCCcccc------cCCcccccHHHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHH
Confidence 4444432110 001124456665543322 12223345789999999999999999999999999998876632
Q ss_pred hhhhhccccCCCCcEEEEecChHHHHHHHH-HHHHHHcCCEEEEecC-CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHH
Q 010568 256 CLLESVNEKLTSEDVYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLN 333 (507)
Q Consensus 256 ~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~v~l~~~-~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~ 333 (507)
... ...+.+..+|++++.+|++|.+++.. ++.++..|+++++.+. ++..+++.|+++++|+++++|+++..+++...
T Consensus 259 ~~~-~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 337 (979)
T 3tsy_A 259 DGE-NPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSE 337 (979)
T ss_dssp CSS-SCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGG
T ss_pred Hhh-cccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCcc
Confidence 211 11335788999999999999999965 6788999999999876 99999999999999999999999998865211
Q ss_pred HhhhccchhHHHHHHHHHHhHHhhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhh-CCc
Q 010568 334 QKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAH 412 (507)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~-~~~ 412 (507)
. ...+ .++||.+++||+++++++.+++++.+ +++
T Consensus 338 ~-------------------------------------~~~~--------l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~ 372 (979)
T 3tsy_A 338 T-------------------------------------EKYD--------LSSIRVVKSGAAPLGKELEDAVNAKFPNAK 372 (979)
T ss_dssp G-------------------------------------GTSC--------CTTCCEEEESSCCCCSSHHHHHHHHCTTCE
T ss_pred c-------------------------------------cCCC--------ccceEEEEEcCCCCCHHHHHHHHHHCCCCe
Confidence 1 1111 13899999999999999999999988 899
Q ss_pred EEeecccccCccceeccC----CCCCccCCcccccccCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhh
Q 010568 413 VLQGYGLTETCAGTFVSL----PNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLT 488 (507)
Q Consensus 413 v~~~YG~tE~~~~~~~~~----~~~~~~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~ 488 (507)
+++.||+||++.+++... .......+++|+|+||++++|+|.++++. ++.|+.|||+|+|++++.|||++|+.|
T Consensus 373 l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~--~~~g~~GEl~i~g~~v~~GY~~~p~~t 450 (979)
T 3tsy_A 373 LGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDS--LSRNQPGEICIRGHQIMKGYLNNPAAT 450 (979)
T ss_dssp EEECEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCB--CCTTCCEEEEEESTTSCSEETTCHHHH
T ss_pred EEeeechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCC--CCCCCccEEEEECCCccccccCChhhh
Confidence 999999999998765542 12233458999999999999999333444 445699999999999999999999999
Q ss_pred hhhc-ccCceeec-cEEEecC
Q 010568 489 KEVM-VDGWFHTG-MGVWEQL 507 (507)
Q Consensus 489 ~~~~-~dgw~~TG-lg~~d~d 507 (507)
++.| .+|||+|| +|++|+|
T Consensus 451 ~~~f~~~g~~~TGDl~~~~~d 471 (979)
T 3tsy_A 451 AETIDKDGWLHTGDIGLIDDD 471 (979)
T ss_dssp HHHBCTTSCEEEEEEEEECTT
T ss_pred hhhccCCCcEEcCCEEEEcCC
Confidence 9999 79999999 9999986
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-55 Score=457.78 Aligned_cols=373 Identities=18% Similarity=0.251 Sum_probs=310.4
Q ss_pred CCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHC-CCCCCCEEEEEeCCchhhHHHHHH
Q 010568 44 ESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTC-GVEERGKCGIYGVNCPEWIIGMEA 122 (507)
Q Consensus 44 ~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~-gv~~gd~V~i~~~n~~~~~~~~lA 122 (507)
+|+.++|+++++++||++|+++. + +++||+||.++++++|++|++. |.++|++|+++++|++++++++||
T Consensus 1 m~l~~~l~~~a~~~p~~~Al~~~----~-----~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA 71 (511)
T 3e7w_A 1 MKLLHAIQTHAETYPQTDAFRSQ----G-----QSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLG 71 (511)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHCCCCeEEEcC----C-----ceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHH
Confidence 47999999999999999999864 2 5799999999999999999984 888999999999999999999999
Q ss_pred HHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCceEeeH
Q 010568 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSW 202 (507)
Q Consensus 123 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 202 (507)
|+++|++++|+++.++.+++.++++.++++++|++...... ... . ......+
T Consensus 72 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~---~~~---~----------------------~~~~~~~ 123 (511)
T 3e7w_A 72 SVKAGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSID---AVG---Q----------------------QIQTVSA 123 (511)
T ss_dssp HHHHTCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTT---CCC---C----------------------SSCEEEH
T ss_pred HHHhCCEEEecCCCChHHHHHHHHHhCCCCEEEecccccch---hcc---c----------------------ccceecH
Confidence 99999999999999999999999999999999997543211 000 0 0123455
Q ss_pred HHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHH
Q 010568 203 DEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282 (507)
Q Consensus 203 ~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g 282 (507)
+++...............++++++|+|||||||.||+|.++|.++...+..+...+ ++..+|++++.+|++|.++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~ 198 (511)
T 3e7w_A 124 EELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADF-----PVSGGKIFLNQAPFSFDLS 198 (511)
T ss_dssp HHHHTSCSCCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHS-----TTTTTCEEEECSCTTSTHH
T ss_pred hhhhccccCCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhc-----CCCccceEEEeCCccHHHH
Confidence 56655433222223345678999999999999999999999999999888855444 7889999999999999999
Q ss_pred HHHHHHHHHcCCEEEEecC----CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhHHhhh
Q 010568 283 RAIEEVFISNGAAIGFWRG----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNL 358 (507)
Q Consensus 283 ~~~~~~~l~~G~~v~l~~~----~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 358 (507)
+..++.++..|+++++.+. ++..+++.++++++|+++++|++++.++....
T Consensus 199 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~------------------------- 253 (511)
T 3e7w_A 199 VMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPG------------------------- 253 (511)
T ss_dssp HHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTT-------------------------
T ss_pred HHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccc-------------------------
Confidence 8888999999999998864 88999999999999999999999998754110
Q ss_pred hcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhh-CCcEEeecccccCccceeccCCCC----
Q 010568 359 KKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVSLPNE---- 433 (507)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~---- 433 (507)
.... ..+++|.+++||+++++++.+.+.+.+ ++++++.||+||+++.++......
T Consensus 254 ------------~~~~--------~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~ 313 (511)
T 3e7w_A 254 ------------FSQD--------LLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVIS 313 (511)
T ss_dssp ------------CSTT--------TCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCSEEEEECHHHHT
T ss_pred ------------cccc--------cCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeeeeEEeccccccc
Confidence 0000 113799999999999999999999988 899999999999988766543321
Q ss_pred CccCCcccccccCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhc--ccC--ceeec-cEEEec
Q 010568 434 MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM--VDG--WFHTG-MGVWEQ 506 (507)
Q Consensus 434 ~~~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~--~dg--w~~TG-lg~~d~ 506 (507)
.....++|+|+||++++|+| ++++.++ .|+.|||+|+||+++.|||++|+.+++.| .+| ||+|| +|++++
T Consensus 314 ~~~~~~~G~~~~~~~~~i~d-~~g~~~~--~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~~d 388 (511)
T 3e7w_A 314 RSESLPVGFAKPDMNIFIMD-EEGQPLP--EGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFIQD 388 (511)
T ss_dssp TCSSCCCBEECTTCEEEEEC-TTSCBCC--TTCCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEEET
T ss_pred cCCcCCCcceeCCCEEEEEC-CCCCCCC--CCCceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCCeEEccC
Confidence 12336799999999999999 8776555 45999999999999999999999999999 345 89999 999963
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-56 Score=459.72 Aligned_cols=373 Identities=19% Similarity=0.205 Sum_probs=304.2
Q ss_pred CCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHHHHH
Q 010568 44 ESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEAC 123 (507)
Q Consensus 44 ~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~ 123 (507)
+|+.++|+++++++||++|+++. + +++||+||.++++++|++|++.|+++||+|+++++|++++++++|||
T Consensus 1 m~l~~~l~~~a~~~p~~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~ 71 (512)
T 3fce_A 1 MKLLEQIEKWAAETPDQTAFVWR---D------AKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGC 71 (512)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHCCCceEEEeC---C------ceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHH
Confidence 47999999999999999999864 3 57999999999999999999999999999999999999999999999
Q ss_pred HhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCceEeeHH
Q 010568 124 NALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWD 203 (507)
Q Consensus 124 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (507)
+++|++++|++|.++.+++.++++.++++++|++...... . .. ..++..+ .+.
T Consensus 72 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~-------~-~~-~~~~~~~------------------~~~ 124 (512)
T 3fce_A 72 VKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVT-------D-LP-VRIVSED------------------NLK 124 (512)
T ss_dssp HHTTCCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCSS-------C-CS-SEEEETH------------------HHH
T ss_pred HHhCCEEEeeCCCCcHHHHHHHHHhcCCCEEEecCccccc-------c-cc-cceechh------------------hhh
Confidence 9999999999999999999999999999999997543211 0 00 1111100 122
Q ss_pred HHHhcc-ccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHH
Q 010568 204 EFLQLG-ENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282 (507)
Q Consensus 204 ~l~~~~-~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g 282 (507)
++.... ...........++++++|+|||||||.||+|+++|.++.+.+......+ ++..+|++++.+|++|.++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~ 199 (512)
T 3fce_A 125 DIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDF-----NLQTGQVFLNQAPFSFDLS 199 (512)
T ss_dssp HHHHHTTTCCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHT-----TCCSSCEEEECSCTTSGGG
T ss_pred hhcccccccCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhc-----CCCCCCEEEEeCCccHhHH
Confidence 222111 1112223345789999999999999999999999999999888855544 7889999999999999999
Q ss_pred HHHHHHHHHcCCEEEEecC----CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhHHhhh
Q 010568 283 RAIEEVFISNGAAIGFWRG----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNL 358 (507)
Q Consensus 283 ~~~~~~~l~~G~~v~l~~~----~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 358 (507)
+..++.+++.|+++++.+. ++..+++.++++++|+++++|++++.++....
T Consensus 200 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~------------------------- 254 (512)
T 3fce_A 200 VMDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEAS------------------------- 254 (512)
T ss_dssp HHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTT-------------------------
T ss_pred HHHHHHHHhCCCEEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhcc-------------------------
Confidence 8888999999999999864 89999999999999999999999988753110
Q ss_pred hcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhh-CCcEEeecccccCccceeccCCCCC---
Q 010568 359 KKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVSLPNEM--- 434 (507)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~~--- 434 (507)
.... ..+++|.+++||+++++++.+.+.+.+ ++++++.||+||+++.++.......
T Consensus 255 ------------~~~~--------~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~ 314 (512)
T 3fce_A 255 ------------FSES--------MLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLD 314 (512)
T ss_dssp ------------CSTT--------TSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEECCHHHHH
T ss_pred ------------ccch--------hCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhheeeEEecccccc
Confidence 0000 114899999999999999999999988 8999999999999887765443321
Q ss_pred -ccCCcccccccCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhcc----cCceeec-cEEEe
Q 010568 435 -SMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV----DGWFHTG-MGVWE 505 (507)
Q Consensus 435 -~~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~----dgw~~TG-lg~~d 505 (507)
....++|+|+++++++|+| +++..++. |+.|||+|+||+++.|||++|+.+++.|. +|||+|| +|+++
T Consensus 315 ~~~~~~~G~~~~~~~~~i~d-~~g~~~~~--g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~~ 388 (512)
T 3fce_A 315 QYKSLPVGYCKSDCRLLIMK-EDGTIAPD--GEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYVE 388 (512)
T ss_dssp HCSSCCCEEECTTCEEEEEC-SSSCBCCT--TSCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEEE
T ss_pred ccCCCccccccCCcEEEEEC-CCCCCCCC--CCeEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCCceEEec
Confidence 2347899999999999999 87776654 59999999999999999999999999982 5699999 99984
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-55 Score=458.52 Aligned_cols=375 Identities=18% Similarity=0.168 Sum_probs=306.6
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHHHH
Q 010568 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (507)
Q Consensus 43 ~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (507)
+.|+.++|+++++++||++|+.+. + +++||+||.++++++|++|+++|+++||+|+++++|++++++++||
T Consensus 3 ~~~l~~~l~~~a~~~p~~~a~~~~----~-----~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA 73 (521)
T 3l8c_A 3 LKDMIDSIEQFAQTQADFPVYDCL----G-----ERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVA 73 (521)
T ss_dssp CCCHHHHHHHHHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCcceecC----C-----CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence 578999999999999999999864 3 5799999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCceEeeH
Q 010568 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSW 202 (507)
Q Consensus 123 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 202 (507)
|+++|++++|++|.++.+++.++++.++++++|++++....+ ... ....+
T Consensus 74 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~--------~~~----------------------~~~~~ 123 (521)
T 3l8c_A 74 LTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTI--------EGI----------------------SLVSL 123 (521)
T ss_dssp HHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCC--------TTS----------------------EEEEH
T ss_pred HHHhCCEEEecCccccHHHHHHHHHhCCCCEEEecCcccccc--------ccC----------------------cccch
Confidence 999999999999999999999999999999999987643211 111 12233
Q ss_pred HHHHhccc--cCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHH
Q 010568 203 DEFLQLGE--NKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHI 280 (507)
Q Consensus 203 ~~l~~~~~--~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~ 280 (507)
.++..... ..........++++++|+|||||||.||+|.++|.++.+....+... ........+++++..|++|.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~ 200 (521)
T 3l8c_A 124 SEIESAKLAEMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIED---AAFDVPKQPQMLAQPPYSFD 200 (521)
T ss_dssp HHHHHHHHHTCCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHC---TTTCCCSSCEEECCSCTTSG
T ss_pred hhhhhcccccCCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhc---cccCCCCCCeEEecCCccHH
Confidence 33322111 11122334578999999999999999999999999999877764332 12467889999999999999
Q ss_pred HHHHHHHHHHHcCCEEEEecC----CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhHHh
Q 010568 281 FDRAIEEVFISNGAAIGFWRG----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFH 356 (507)
Q Consensus 281 ~g~~~~~~~l~~G~~v~l~~~----~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (507)
.++..++.++..|+++++.+. ++..+++.+.++++|++.++|+++..++....
T Consensus 201 ~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~----------------------- 257 (521)
T 3l8c_A 201 LSVMYWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDD----------------------- 257 (521)
T ss_dssp GGHHHHHHHHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTT-----------------------
T ss_pred HHHHHHHHHHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhc-----------------------
Confidence 888888889999999998764 88999999999999999999999988753100
Q ss_pred hhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhh-CCcEEeecccccCccceeccCCCC--
Q 010568 357 NLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVSLPNE-- 433 (507)
Q Consensus 357 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~-- 433 (507)
.... ..+++|.+++||+++++++.+.+.+.+ ++++++.||+||+++.++......
T Consensus 258 --------------~~~~--------~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~ 315 (521)
T 3l8c_A 258 --------------FCQA--------KMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREM 315 (521)
T ss_dssp --------------CSTT--------TCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEEECHHH
T ss_pred --------------cccc--------cCccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHhhhhceeeccccc
Confidence 0000 013799999999999999999999888 899999999999988766543322
Q ss_pred --CccCCcccccccCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhc----ccCceeec-cEEEec
Q 010568 434 --MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM----VDGWFHTG-MGVWEQ 506 (507)
Q Consensus 434 --~~~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~----~dgw~~TG-lg~~d~ 506 (507)
.....++|+|+||++++|+| +++..++. |+.|||+|+||+++.|||++|+.+++.| .+|||+|| +|++|+
T Consensus 316 ~~~~~~~~vG~p~~~~~~~i~d-~~g~~~~~--g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~ 392 (521)
T 3l8c_A 316 VDNYTRLPIGYPKPDSPTYIID-EDGKELSS--GEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTE 392 (521)
T ss_dssp HHHCSSCEEEEECTTSCEEEEC-TTSCBCCT--TCCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECS
T ss_pred ccCCCccccccccCCCEEEEEC-CCcCCCCC--CCceEEEecccccChhhcCCchHhhccCcCCCCceeeeCCCEEEEeC
Confidence 12346899999999999999 87776554 5999999999999999999999999998 35799999 999998
Q ss_pred C
Q 010568 507 L 507 (507)
Q Consensus 507 d 507 (507)
|
T Consensus 393 d 393 (521)
T 3l8c_A 393 D 393 (521)
T ss_dssp S
T ss_pred C
Confidence 6
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-55 Score=460.72 Aligned_cols=390 Identities=19% Similarity=0.216 Sum_probs=309.5
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHH
Q 010568 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120 (507)
Q Consensus 41 ~~~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~ 120 (507)
....|+.++|+++++++||++|+++. ++ +..+++||+||.++++++|++|+++|+++||+|+++++|++++++++
T Consensus 8 ~~~~tl~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~ 82 (590)
T 3kxw_A 8 LQCQSLVDVVRLRALHSPNKKSCTFL---NK--ELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAF 82 (590)
T ss_dssp HTCSSHHHHHHHHHHHCTTSEEEEEE---ET--TEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred cCcccHHHHHHHHHHhCCCCeEEEEE---cC--CeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHH
Confidence 45689999999999999999999986 42 23378999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCEEeeccCCC---ChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCc
Q 010568 121 EACNALGLHCVPLYDTL---GAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGL 197 (507)
Q Consensus 121 lA~~~~G~~~v~l~~~~---~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 197 (507)
|||+++|++++|++|.. +.+++.++++.++++++|++.+....+........+....+.
T Consensus 83 lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~------------------ 144 (590)
T 3kxw_A 83 LGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIP------------------ 144 (590)
T ss_dssp HHHHHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTEE------------------
T ss_pred HHHHHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhcccccccc------------------
Confidence 99999999999999988 457899999999999999987655544332211111111111
Q ss_pred eEeeHHHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecCh
Q 010568 198 AVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPL 277 (507)
Q Consensus 198 ~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl 277 (507)
....+++.... ..........++++++|+|||||||.||+|+++|.+++..+......+ ++..+|++++++|+
T Consensus 145 -~~~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~ 217 (590)
T 3kxw_A 145 -AIALESIELNR-SSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSF-----HMNDETIIFSWLPP 217 (590)
T ss_dssp -EEEGGGCCGGG-GGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCT
T ss_pred -eeechhccccc-cccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhh-----CCCCcCeEEEecCC
Confidence 11122211111 112223455789999999999999999999999999999998865544 78899999999999
Q ss_pred HHHHHHHH-HHHHHHcCCEEEEecC-----CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHH
Q 010568 278 AHIFDRAI-EEVFISNGAAIGFWRG-----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAY 351 (507)
Q Consensus 278 ~h~~g~~~-~~~~l~~G~~v~l~~~-----~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 351 (507)
+|.+++.. ++.+++.|+++++.+. ++..+++.|+++++|++.++|.++..+++.+.....
T Consensus 218 ~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~-------------- 283 (590)
T 3kxw_A 218 HHDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKK-------------- 283 (590)
T ss_dssp TSHHHHHTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGG--------------
T ss_pred CcchhhHHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhc--------------
Confidence 99999986 7889999999998764 789999999999999999999999988664221110
Q ss_pred HhHHhhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhC------CcEEeecccccCccc
Q 010568 352 SYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVAC------AHVLQGYGLTETCAG 425 (507)
Q Consensus 352 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~------~~v~~~YG~tE~~~~ 425 (507)
... ..+++|.+++||+++++++.+.+.+.++ .++++.||+||++++
T Consensus 284 --------------------~~~--------~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~ 335 (590)
T 3kxw_A 284 --------------------EGL--------DLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLL 335 (590)
T ss_dssp --------------------TTC--------CCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSE
T ss_pred --------------------cCC--------CchhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCccccccccccccccce
Confidence 000 1148999999999999999999998873 479999999999988
Q ss_pred eeccCCC--------------------------CCccCCcccccccCceEEEeecCCCccccCCCCCCceEEEecCCccc
Q 010568 426 TFVSLPN--------------------------EMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFS 479 (507)
Q Consensus 426 ~~~~~~~--------------------------~~~~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~ 479 (507)
++..... ......++|+|+++ ++|+| +++. .+++.|+.|||+|+||+++.
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d-~~~~-~~~~~g~~GEl~v~g~~v~~ 411 (590)
T 3kxw_A 336 VTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIID-PDTL-IPCDFDQVGEIWVQSNSVAK 411 (590)
T ss_dssp EEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEEC-TTTC-CBCCTTBCEEEEEESTTSCC
T ss_pred eecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEc-CCCC-cCCCCCCEEEEEEeCCcccc
Confidence 7754321 11224689999998 88888 5532 34456699999999999999
Q ss_pred cccCChhhhhhhccc-------C--ceeec-cEEEec
Q 010568 480 GYYKREDLTKEVMVD-------G--WFHTG-MGVWEQ 506 (507)
Q Consensus 480 gY~~~~~~~~~~~~d-------g--w~~TG-lg~~d~ 506 (507)
|||++|+.|+++|.+ | ||+|| +|++|+
T Consensus 412 GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~dd 448 (590)
T 3kxw_A 412 GYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLHE 448 (590)
T ss_dssp CBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEET
T ss_pred cccCChhHHHHHHhccccCCCCCCcEEecCcEEEEEC
Confidence 999999999999943 5 99999 999994
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-54 Score=453.02 Aligned_cols=391 Identities=19% Similarity=0.157 Sum_probs=308.4
Q ss_pred CCCCCCCHHHHHHHHHHhCCCCCceeeEeeccC----cCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCch
Q 010568 39 PIPGMESCWDVFRMAVERNPNNRMLGQREIVDG----KAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCP 114 (507)
Q Consensus 39 ~~~~~~tl~~~l~~~~~~~pd~~a~~~~~~~~~----~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~ 114 (507)
......|+.++|+++++++||++|+++. ++ .....+++||+||.++++++|+.|++.|+ +||+|+++++|++
T Consensus 15 ~~~~~~tl~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~ 90 (562)
T 3ite_A 15 QYTSTVPPSHYIETWAKTHPEWKAVEVA---TGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSL 90 (562)
T ss_dssp ---CCCCTTHHHHHHHHHCTTSEEEEEE---ECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCH
T ss_pred eecccCCHHHHHHHHHHHCCCchhhhcc---cccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCH
Confidence 4456688999999999999999999976 32 12234789999999999999999999999 7999999999999
Q ss_pred hhHHHHHHHHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhh
Q 010568 115 EWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEK 194 (507)
Q Consensus 115 ~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 194 (507)
++++++|||+++|++++|++|.++.+++.++++.++++++|++.+...... ......++....
T Consensus 91 ~~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~----------- 153 (562)
T 3ite_A 91 IAFAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVE------LPPETKVLDTKN----------- 153 (562)
T ss_dssp HHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCC------CCTTCEEEETTC-----------
T ss_pred HHHHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEccccccccc------cCccceeecccc-----------
Confidence 999999999999999999999999999999999999999999876433211 011122222111
Q ss_pred cCceEeeHHHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhh---hccccCCCCcEE
Q 010568 195 YGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLE---SVNEKLTSEDVY 271 (507)
Q Consensus 195 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~---~~~~~~~~~d~~ 271 (507)
..+.+...... .........++++++|+|||||||.||+|+++|.++...+..+...+. .....+...+++
T Consensus 154 -----~~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (562)
T 3ite_A 154 -----QSFIENLSTQD-TSDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKF 227 (562)
T ss_dssp -----HHHHHHHHHSC-CSCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEE
T ss_pred -----hhhhhhccccc-ccccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceE
Confidence 11222222221 112223445788999999999999999999999999888776544321 223457888999
Q ss_pred EEecChHHHHHHHHHHHHHHcCCEEEEecC--CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHH
Q 010568 272 VSYLPLAHIFDRAIEEVFISNGAAIGFWRG--DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNI 349 (507)
Q Consensus 272 l~~~pl~h~~g~~~~~~~l~~G~~v~l~~~--~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~ 349 (507)
++..|++|..++..++.++..|+++++.+. .+..+++.++++++|+++++|++++.+..
T Consensus 228 ~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~------------------- 288 (562)
T 3ite_A 228 LCLASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGL------------------- 288 (562)
T ss_dssp ECCSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTC-------------------
T ss_pred EEecCchhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhccc-------------------
Confidence 999999998888888889999999998764 46788899999999999999998876421
Q ss_pred HHHhHHhhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhCCcEEeecccccCccceecc
Q 010568 350 AYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVS 429 (507)
Q Consensus 350 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~~~v~~~YG~tE~~~~~~~~ 429 (507)
.+ . ..+++|.+++||+++++++.+.+++.+++++++.||+||+++.++..
T Consensus 289 ------------------~~----~--------~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~ 338 (562)
T 3ite_A 289 ------------------VP----E--------DAPHLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVTIGCSAG 338 (562)
T ss_dssp ------------------CG----G--------GSTTCCEEEEESSCCCHHHHHHHTTCSSCEEEEEECCGGGCSCSEEE
T ss_pred ------------------Cc----c--------ccCceEEEEEecCCCCHHHHHHHhhCCCcEEEEeeccchheeeeeee
Confidence 00 0 01389999999999999999999998899999999999998877766
Q ss_pred CCCCCccCCcccccccCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhcccC--ceeec-cEEEec
Q 010568 430 LPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDG--WFHTG-MGVWEQ 506 (507)
Q Consensus 430 ~~~~~~~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~dg--w~~TG-lg~~d~ 506 (507)
........+++|+|+++++++|+| ++++ .+++.|+.|||+|+|++++.|||++|+.+...+.+| ||+|| +|++|+
T Consensus 339 ~~~~~~~~~~~G~p~~~~~~~i~d-~~~~-~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~g~~w~~TGDlg~~d~ 416 (562)
T 3ite_A 339 RILPDSDTRCIGHPLGDSVAHVLA-PGSN-EHVKKGMAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTGDIVRMDA 416 (562)
T ss_dssp ECCTTSCTTEEEEECTTCEEEEEC-TTSS-CBCCTTSCEEEEEESTTSCCEESSCTTCCSEEEETTEEEEEEEEEEEECT
T ss_pred eecCCCCCccccccCCCCeEEEEe-CCCC-CCCCCCCceEEEEeccccchhhCCCccccccccCCCCEEEecCCEEEEcC
Confidence 555444558999999999999999 5443 334566999999999999999999999988777666 99999 999998
Q ss_pred C
Q 010568 507 L 507 (507)
Q Consensus 507 d 507 (507)
|
T Consensus 417 d 417 (562)
T 3ite_A 417 D 417 (562)
T ss_dssp T
T ss_pred C
Confidence 6
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-55 Score=454.04 Aligned_cols=383 Identities=21% Similarity=0.253 Sum_probs=299.0
Q ss_pred CHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHHHHHH
Q 010568 45 SCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACN 124 (507)
Q Consensus 45 tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~ 124 (507)
||.++|+++++++||++|+++. + +++||+||.++++++|++|++. +||+|+|+++|+++++++++||+
T Consensus 2 tl~~~l~~~a~~~pd~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~ 69 (501)
T 3ipl_A 2 SLDFWLYKQAQQNGHHIAITDG---Q------ESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACW 69 (501)
T ss_dssp -CCCHHHHHHHHHTTSEEEECS---S------CEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcCCceEEEeC---C------cEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHH
Confidence 6778999999999999999864 3 4799999999999999999987 89999999999999999999999
Q ss_pred hcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCceE-eeHH
Q 010568 125 ALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAV-YSWD 203 (507)
Q Consensus 125 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~ 203 (507)
++|++++|+++.++.+++.++++.++++++|++.+........... ..+..+.......... ........ ...+
T Consensus 70 ~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 144 (501)
T 3ipl_A 70 LANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSL--DDIEFAGRDITTNGLL---DNTMGIQYDTSNE 144 (501)
T ss_dssp HTTCEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEET--TC------------------------------
T ss_pred HcCCEEEecCccCCHHHHHHHHHhcCCCEEEEcccccccccccccc--ccceeeeeeccccccc---ccccccccccchh
Confidence 9999999999999999999999999999999987654332111100 1111110000000000 00000000 0011
Q ss_pred HHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHH
Q 010568 204 EFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDR 283 (507)
Q Consensus 204 ~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~ 283 (507)
.+...............++++++|+|||||||.||+|.++|.++...+..+...+ ++..+|++++.+|++|.+++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~g~ 219 (501)
T 3ipl_A 145 TVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESL-----GFDRDTNWLSVLPIYHISGL 219 (501)
T ss_dssp -----CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHT-----CCCTTCEEEECSCTTSHHHH
T ss_pred hccccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhh-----CCCccCEEEEeCcHHHHHHH
Confidence 1111111111122345789999999999999999999999999999888855444 78899999999999999999
Q ss_pred HHHHHHHHcCCEEEEecC-CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhHHhhhhcCC
Q 010568 284 AIEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGH 362 (507)
Q Consensus 284 ~~~~~~l~~G~~v~l~~~-~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 362 (507)
..++.++..|+++++.+. ++..+++.|+++++|+++++|++++.+++.....
T Consensus 220 ~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~--------------------------- 272 (501)
T 3ipl_A 220 SVLLRAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHE--------------------------- 272 (501)
T ss_dssp HHHHHHHHHTCEEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCS---------------------------
T ss_pred HHHHHHHHcCceEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCC---------------------------
Confidence 888899999999999876 9999999999999999999999999986521000
Q ss_pred CCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhCCcEEeecccccCccceeccCCCC-CccCCccc
Q 010568 363 KHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNE-MSMIGTVG 441 (507)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~-~~~~~s~G 441 (507)
..++|.+++||+++++++.+.+.+ +++++++.||+||+++.++...... ....+++|
T Consensus 273 ---------------------~~~lr~i~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G 330 (501)
T 3ipl_A 273 ---------------------PYNLQKILLGGAKLSATMIETALQ-YNLPIYNSFGMTETCSQFLTATPEMLHARPDTVG 330 (501)
T ss_dssp ---------------------CTTCCEEEECSSCCCHHHHHHHHH-TTCCEEEEEEEGGGTEEEEEECHHHHHHCTTCCB
T ss_pred ---------------------cCcccEEEEeCCCCCHHHHHHHHH-hCCCEeccccccccccceeecCccccccCCCCCC
Confidence 026899999999999999999987 5899999999999987655544322 23457899
Q ss_pred ccccCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhcccCceeec-cEEEecC
Q 010568 442 PPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG-MGVWEQL 507 (507)
Q Consensus 442 ~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~dgw~~TG-lg~~d~d 507 (507)
+|++|++++|+| ++ .++.|||+|+|+.++.|||++++.+.. |.+|||+|| +|++|+|
T Consensus 331 ~p~~~~~~~i~d-~~-------~~~~GEl~v~g~~~~~gY~~~~~~t~~-~~~g~~~TGDl~~~~~~ 388 (501)
T 3ipl_A 331 MPSANVDVKIKN-PN-------KEGHGELMIKGANVMNGYLYPTDLTGT-FENGYFNTGDIAEIDHE 388 (501)
T ss_dssp EECTTCEEEEES-CC-------SSCCEEEEEESTTSCSCCSBSTTCCCS-EETTEEEEEEEEEECTT
T ss_pred CCCCCcEEEEec-CC-------CCCccEEEEeccchhhhhCcChhhcch-hcCCceecCCEEEEcCC
Confidence 999999999999 54 346899999999999999999999887 899999999 9999976
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-55 Score=454.11 Aligned_cols=371 Identities=25% Similarity=0.328 Sum_probs=297.1
Q ss_pred CCCCCHHHHHHHHHHhCCC-CCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHH
Q 010568 41 PGMESCWDVFRMAVERNPN-NRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIG 119 (507)
Q Consensus 41 ~~~~tl~~~l~~~~~~~pd-~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~ 119 (507)
..+.|+.+.|.++++++|+ ++|+++. + +++||+||.++++++|+.|. .|++|+++++|+++++++
T Consensus 19 ~~~~tl~~~l~~~a~~~p~d~~Al~~~----~-----~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~ 84 (505)
T 3nyq_A 19 SHMSSLFPALSPAPTGAPADRPALRFG----E-----RSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVA 84 (505)
T ss_dssp -----CCTTTSSCCCSGGGGSEEEEET----T-----EEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHH
T ss_pred cccchhHHHHHHHHHhCCCCCeEEEEC----C-----eeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHH
Confidence 4578899999999999987 9999864 2 67999999999999998774 388999999999999999
Q ss_pred HHHHHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCceE
Q 010568 120 MEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAV 199 (507)
Q Consensus 120 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 199 (507)
++||+++|++++|++|.++.+++.+++++++++++|++.+... ......+..+ .++..
T Consensus 85 ~la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~------~~~~~~~~~~-~~~~~--------------- 142 (505)
T 3nyq_A 85 VVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAEL------PPALGALERV-DVDVR--------------- 142 (505)
T ss_dssp HHHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCC------CGGGTTSEEE-ECCTT---------------
T ss_pred HHHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCcccc------chhhcccccc-ccccc---------------
Confidence 9999999999999999999999999999999999999865211 0000111111 11110
Q ss_pred eeHHHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHH
Q 010568 200 YSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAH 279 (507)
Q Consensus 200 ~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h 279 (507)
...........++++++|+|||||||.||+|+++|.++...+..+...+ ++..+|++++.+|++|
T Consensus 143 ----------~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~ 207 (505)
T 3nyq_A 143 ----------ARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAW-----QWTGEDVLVQGLPLFH 207 (505)
T ss_dssp ----------CCCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECCCTTS
T ss_pred ----------cccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHh-----CCCCCcEEEEeccHHH
Confidence 0011222345678999999999999999999999999999998866555 7889999999999999
Q ss_pred HHHHHH-HHHHHHcCCEEEEecC-CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhHHhh
Q 010568 280 IFDRAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHN 357 (507)
Q Consensus 280 ~~g~~~-~~~~l~~G~~v~l~~~-~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (507)
..++.. ++.++..|+++++.+. ++..+++.+ ++++|+++++|+++..+++.+....
T Consensus 208 ~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~--------------------- 265 (505)
T 3nyq_A 208 VHGLVLGILGPLRRGGSVRHLGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADP--------------------- 265 (505)
T ss_dssp HHHHTTTTHHHHHHTCEEEECSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCH---------------------
T ss_pred HHHHHHHHHHHHhcCCEEEECCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCc---------------------
Confidence 999875 7889999999998876 899999999 8899999999999999876422110
Q ss_pred hhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhCCcEEeecccccCccceeccCCCCCccC
Q 010568 358 LKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMI 437 (507)
Q Consensus 358 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~ 437 (507)
....++ +++|.+++||+++++++.+++.+.+++++++.||+||++..++...... ...
T Consensus 266 -------------~~~~~l--------~~lr~i~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~-~~~ 323 (505)
T 3nyq_A 266 -------------ELAKAL--------AGARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADGE-PRA 323 (505)
T ss_dssp -------------HHHHHH--------HHCSEEEECSSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCTTSC-CCT
T ss_pred -------------hhhccc--------ccceEEEECCCCCCHHHHHHHHHhcCCeeecccchhhcccccccCCCCC-CCC
Confidence 001112 2789999999999999999999989999999999999987766554433 345
Q ss_pred CcccccccCceEEEeecCCCccccC-CCCCCceEEEecCCccccccCChhhhhhhc-ccCceeec-cEEEecC
Q 010568 438 GTVGPPVPNVDVCLESVPEMEYDAL-SSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTG-MGVWEQL 507 (507)
Q Consensus 438 ~s~G~p~pg~~i~ivd~~~~~~~~~-~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~-~dgw~~TG-lg~~d~d 507 (507)
+++|+|+||++++|+| +++..++. +.|+.|||+|+|++++.|||++|+.++++| .||||+|| +|++|+|
T Consensus 324 ~~vG~p~~~~~~~i~d-~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~d 395 (505)
T 3nyq_A 324 GTVGVPLPGVELRLVE-EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPD 395 (505)
T ss_dssp TCCCEECTTCEEEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEECTT
T ss_pred CCcccCCCCCEEEEEC-CCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeEEECCC
Confidence 8999999999999999 88877665 346899999999999999999999999999 79999999 9999976
|
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-52 Score=476.18 Aligned_cols=373 Identities=20% Similarity=0.250 Sum_probs=307.7
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHHHH
Q 010568 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (507)
Q Consensus 43 ~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (507)
..++.++|+++++++||++|+++. + +++||+||.++++++|+.|++.|+++|++|+|+++|++++++++||
T Consensus 463 ~~~l~~~~~~~~~~~p~~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~la 533 (1304)
T 2vsq_A 463 TKPLTYWFKEAVNANPDAPALTYS---G------QTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILG 533 (1304)
T ss_dssp CCCHHHHHHHHHHHCTTSEEEESS---S------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCeEEEEC---C------eeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHH
Confidence 378999999999999999999864 3 4699999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCceEeeH
Q 010568 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSW 202 (507)
Q Consensus 123 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 202 (507)
|+++|++++|++|.++.+++.+++++++++++|++.+........ +.....+.+++..
T Consensus 534 ilkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~-----~~~~~~~~~~~~~----------------- 591 (1304)
T 2vsq_A 534 VLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAEL-----PYTGTTLFIDDQT----------------- 591 (1304)
T ss_dssp HHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTTC-----CCCSEEEESSCGG-----------------
T ss_pred HHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhcc-----CCCCcEEEecccc-----------------
Confidence 999999999999999999999999999999999987644322111 1122333333210
Q ss_pred HHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHH
Q 010568 203 DEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282 (507)
Q Consensus 203 ~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g 282 (507)
.+ .. ..........++++++|+|||||||.||||+++|+++.+. .. ......+..+|++++..|++|..+
T Consensus 592 -~~-~~--~~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~-----~~~~~~~~~~d~~l~~~~~~fd~~ 661 (1304)
T 2vsq_A 592 -RF-EE--QASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VK-----HVDYMAFSDQDTFLSVSNYAFDAF 661 (1304)
T ss_dssp -GG-GS--CSSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HS-----SCCSSCCCTTCEEEECSCTTSTHH
T ss_pred -cc-cc--ccCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HH-----HHHhcCCCCCCEEEEECCccHHHH
Confidence 00 00 1111223457899999999999999999999999999875 33 223447889999999999999888
Q ss_pred HHHHHHHHHcCCEEEEecC----CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhHHhhh
Q 010568 283 RAIEEVFISNGAAIGFWRG----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNL 358 (507)
Q Consensus 283 ~~~~~~~l~~G~~v~l~~~----~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 358 (507)
...++.++..|+++++.+. ++..+++.|.++++|+++++|++++.+.+...
T Consensus 662 ~~~~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~------------------------- 716 (1304)
T 2vsq_A 662 TFDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGE------------------------- 716 (1304)
T ss_dssp HHHHHHHHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCS-------------------------
T ss_pred HHHHHHHHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhch-------------------------
Confidence 8888999999999999864 89999999999999999999999998864200
Q ss_pred hcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhC-CcEEeecccccCccceeccCCCC---C
Q 010568 359 KKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVAC-AHVLQGYGLTETCAGTFVSLPNE---M 434 (507)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~-~~v~~~YG~tE~~~~~~~~~~~~---~ 434 (507)
. .+ +++|.+++|||+++.++.+.+.+.++ .+++|.||+||++..++...... .
T Consensus 717 -------------~--~~--------~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~ 773 (1304)
T 2vsq_A 717 -------------D--WM--------KGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDS 773 (1304)
T ss_dssp -------------H--HH--------HTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCCSS
T ss_pred -------------h--cC--------CCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCcccc
Confidence 0 01 27999999999999999999888774 78999999999998776554322 2
Q ss_pred ccCCcccccccCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhc-c------cCceeec-cEEEec
Q 010568 435 SMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-V------DGWFHTG-MGVWEQ 506 (507)
Q Consensus 435 ~~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~-~------dgw~~TG-lg~~d~ 506 (507)
....++|+|++|++++|+| ++++.+|. |+.|||+|+|+++++||+|+|+.|+++| . ++||+|| +|++|+
T Consensus 774 ~~~~~iG~p~~~~~~~i~d-~~~~~~p~--G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~ 850 (1304)
T 2vsq_A 774 ISSLPIGKPISNASVYILN-EQSQLQPF--GAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLP 850 (1304)
T ss_dssp CSSCCCBEECTTEEEEEEC-TTSCBCCT--TCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECT
T ss_pred CCCCCCceeeCCCEEEEEC-CCcCCCCC--CCceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEcC
Confidence 2346899999999999999 87766555 5999999999999999999999999999 3 3499999 999998
Q ss_pred C
Q 010568 507 L 507 (507)
Q Consensus 507 d 507 (507)
|
T Consensus 851 d 851 (1304)
T 2vsq_A 851 D 851 (1304)
T ss_dssp T
T ss_pred C
Confidence 6
|
| >4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=99.98 E-value=3.5e-32 Score=267.83 Aligned_cols=205 Identities=18% Similarity=0.146 Sum_probs=172.5
Q ss_pred CCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHHHHHHHHHHHHHcCCEEEEec
Q 010568 221 KNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWR 300 (507)
Q Consensus 221 ~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~v~l~~ 300 (507)
.+++++|+|||||||.||+|++||+++.+++..+...+ +++++|++++.+|++|.+|+..++.++..|+++++.+
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~ 110 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKAL-----SLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTE 110 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEEC
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHh-----CCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecC
Confidence 46899999999999999999999999999988865544 7899999999999999999998889999999999886
Q ss_pred CCHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhHHhhhhcCCCCCCCchhhhHHhHHHHH
Q 010568 301 GDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVK 380 (507)
Q Consensus 301 ~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 380 (507)
. ....++.++++++|+++++|++++.+++.... ..++
T Consensus 111 ~-~~~~~~~i~~~~~t~~~~~P~~l~~ll~~~~~--------------------------------------~~~l---- 147 (358)
T 4gs5_A 111 P-TANPLAGLDHADFDFVAMVPMQLQSILENSAT--------------------------------------SGQV---- 147 (358)
T ss_dssp C-CSCTTTTCSSCCCSEEEECHHHHHHHHHCTTT--------------------------------------GGGG----
T ss_pred c-cccHHHHHHHhCCeEEEcChHHHHHhhccccc--------------------------------------cccC----
Confidence 4 22346789999999999999999998652110 0011
Q ss_pred HHcCCceEEEEEcCCCCCHHHHHHHHHhhCCcEEeecccccCccceeccCCCCCccCCcccccccCceEEEeecCCCccc
Q 010568 381 QSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYD 460 (507)
Q Consensus 381 ~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~s~G~p~pg~~i~ivd~~~~~~~ 460 (507)
++||.+++||+++++++.+++++ +++++++.||+||+++.++....+.... +++|.+.||+++.+.+
T Consensus 148 ----~~lr~v~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TEt~~~~~~~~~~~~~~-g~~~~~~pgv~~~~~~------- 214 (358)
T 4gs5_A 148 ----DRLGKVLLGGAPVNHALAMQISD-LAMPVYQSYGMTETVSHVALKALNGPEA-SELYVFLPGIQYGVDE------- 214 (358)
T ss_dssp ----GGGCSEEECSSCCCHHHHHHHHT-CSSCEEEEEECGGGSSEEEEEECSSTTC-CSCEEECTTCEEEECT-------
T ss_pred ----CcceEEEEcccCCCchheecccc-cCceEEeccccccccceeeccccccccc-ceeeccCCCeEEEecC-------
Confidence 37999999999999999999987 5899999999999998877766655444 8899999999988754
Q ss_pred cCCCCCCceEEEecCCccccccCChhhhhhhcccCceeec-cEEEecC
Q 010568 461 ALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG-MGVWEQL 507 (507)
Q Consensus 461 ~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~dgw~~TG-lg~~d~d 507 (507)
.|||+++|+.+ .+|||+|| +|++|+|
T Consensus 215 ------~Gel~~~g~~~---------------~~g~~~TGDlg~~d~~ 241 (358)
T 4gs5_A 215 ------RGCLHISGAVT---------------NGQTVQTNDLVEIHGN 241 (358)
T ss_dssp ------TSEEEEESGGG---------------TTCCEEEEEEEEECSS
T ss_pred ------cCceEEecccc---------------cCcceecCCccccccC
Confidence 69999998632 47899999 9999986
|
| >3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-30 Score=264.02 Aligned_cols=244 Identities=16% Similarity=0.074 Sum_probs=184.9
Q ss_pred EeeHHHHHhccccCCCCCCCCCC-CCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecCh
Q 010568 199 VYSWDEFLQLGENKQFDLPVKKK-NDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPL 277 (507)
Q Consensus 199 ~~~~~~l~~~~~~~~~~~~~~~~-~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl 277 (507)
..+.+++.... +.......+ +++++++|||||||.||+|.++|.++......+...+ ...++..+|++++.+|+
T Consensus 65 ~~~~~~l~~~~---p~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~~~ 139 (436)
T 3qov_A 65 FTTKSDMRANY---PFGLVAGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCL--YMVGIRKTDVFQNSSGY 139 (436)
T ss_dssp CBCHHHHHHTT---TTTTCCSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHH--HHTTCCTTSEEEECSCC
T ss_pred CCCHHHHHhcC---CCccccCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHH--HHcCCCCCCEEEECccc
Confidence 34445555432 122233455 8899999999999999999999999987766643322 22367889999999998
Q ss_pred HHHHHH-HHHHHHHHcCCEEEEecC-CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhHH
Q 010568 278 AHIFDR-AIEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKF 355 (507)
Q Consensus 278 ~h~~g~-~~~~~~l~~G~~v~l~~~-~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (507)
.|..+. ...+.++..|+++++.+. ++..+++.|+++++|+++++|+++..|++..........
T Consensus 140 ~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~--------------- 204 (436)
T 3qov_A 140 GMFTGGLGFQYGAERLGCLTVPAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPR--------------- 204 (436)
T ss_dssp TTCHHHHHHHHHHHHHTCEEECCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTT---------------
T ss_pred ccchhHHHHHHHHHHcCCEEEeCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcc---------------
Confidence 755554 457788999999998765 999999999999999999999999999876544321100
Q ss_pred hhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhCCcEEeecccccCccceeccCCCCCc
Q 010568 356 HNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMS 435 (507)
Q Consensus 356 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~ 435 (507)
.+++|.+++||+++++++.+.+++.+|+++++.||+||+++.++......
T Consensus 205 ----------------------------~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~-- 254 (436)
T 3qov_A 205 ----------------------------ETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMTEMNGPGVAFECQE-- 254 (436)
T ss_dssp ----------------------------SSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEEGGGTEEEEEEECTT--
T ss_pred ----------------------------cCCccEEEEeCCcCCHHHHHHHHHHhCccEEecCcchhhcCCeeEEecCC--
Confidence 13799999999999999999999999999999999999965422222211
Q ss_pred cCCcccccccCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhcccCceeec-cEEEecC
Q 010568 436 MIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG-MGVWEQL 507 (507)
Q Consensus 436 ~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~dgw~~TG-lg~~d~d 507 (507)
. ...|.|.++++++|+|.+++..+ +.|+.|||+|+|. +...|.++||+|| +|++|+|
T Consensus 255 ~-~g~~~~~~~~~v~i~d~~~g~~~--~~g~~Gel~v~~~------------~~~~~~~~~y~TGDl~~~~~~ 312 (436)
T 3qov_A 255 Q-NGMHFWEDCYLVEIIDPETGEPV--PEGEIGELVLTTL------------DREMMPLIRYRTRDLTRILPG 312 (436)
T ss_dssp C-SSEEECTTTEEEEEECTTTCSBC--STTCCEEEEEEES------------SCCSSCCCSEEEEEEECEECS
T ss_pred C-CeeEEccCceEEEEEECCCCCCC--CCCCceEEEEecc------------CcCCceEEEEEcCCEEEEcCC
Confidence 1 23677788999999993445444 4569999999984 2334568999999 9999975
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=8.1e-30 Score=258.66 Aligned_cols=242 Identities=16% Similarity=0.095 Sum_probs=184.7
Q ss_pred EeeHHHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecCh-
Q 010568 199 VYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPL- 277 (507)
Q Consensus 199 ~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl- 277 (507)
..+.+++.... +.......++++++++|||||||.||+|.++|.++......+...+ ...++..+|++++.+|+
T Consensus 70 ~~~~~~l~~~~---~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~~~~ 144 (437)
T 2y27_A 70 FTTKGDLRDSY---PFGMFAVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSI--RAAGARRGDKVHVSYGYG 144 (437)
T ss_dssp CBCHHHHHHTT---TTTTCSSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHH--HHTTCCTTCEEEECSCCS
T ss_pred CCCHHHHHhcC---CCccccCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHH--HHcCCCCCCEEEEccccc
Confidence 34556665433 1123344678999999999999999999999999887765543321 12467889999999998
Q ss_pred HHHHHHHHHHHHHHcCCEEEEecC-CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhHHh
Q 010568 278 AHIFDRAIEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFH 356 (507)
Q Consensus 278 ~h~~g~~~~~~~l~~G~~v~l~~~-~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (507)
+|..++...+.++..|+++++.+. ++..+++.|+++++|+++++|+++..|++..........
T Consensus 145 ~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~---------------- 208 (437)
T 2y27_A 145 LFTGGLGAHYGAERAGLTVIPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPV---------------- 208 (437)
T ss_dssp SSHHHHHHHHHHHHTTCEEECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGG----------------
T ss_pred ccccchHHHHHHHHcCCEEEeCCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcc----------------
Confidence 688887778888999999988765 999999999999999999999999998775433211100
Q ss_pred hhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhCCcEEeecccccCccc-eeccCCCCCc
Q 010568 357 NLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAG-TFVSLPNEMS 435 (507)
Q Consensus 357 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~~~v~~~YG~tE~~~~-~~~~~~~~~~ 435 (507)
.+++|.+++||+++++++.+.+++.+|+++++.||+||+++. +........
T Consensus 209 ---------------------------~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~~~- 260 (437)
T 2y27_A 209 ---------------------------QSSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLSEVMGPGVASECVETK- 260 (437)
T ss_dssp ---------------------------GSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEETTTTEEEEEECCTTTC-
T ss_pred ---------------------------cCCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCCchhhcCCeeEEecCCCC-
Confidence 037999999999999999999999889999999999998443 333222111
Q ss_pred cCCcccccccCceEEEeecCC-CccccCCCCCCceEEEecCCccccccCChhhhhhhcccCceeec-cEEEec
Q 010568 436 MIGTVGPPVPNVDVCLESVPE-MEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG-MGVWEQ 506 (507)
Q Consensus 436 ~~~s~G~p~pg~~i~ivd~~~-~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~dgw~~TG-lg~~d~ 506 (507)
...+.|.+++.++|+| ++ +..+ +.|+.|||+|+|. +.+.|.++||+|| +|++|+
T Consensus 261 --~g~~~~~~~~~~~i~d-~~~g~~~--~~g~~Gel~v~~~------------t~~~~~~~~y~TGDl~~~~~ 316 (437)
T 2y27_A 261 --DGPTIWEDHFYPEIID-PETGEVL--PDGELGELVFTSL------------TKEALPIIRYRTRDLTRLLP 316 (437)
T ss_dssp --SSCEECTTTEEEEEEC-TTTCCBC--CTTCCEEEEEEES------------SCSSSCCCSEEEEEEECEEC
T ss_pred --CceeEccCceEEEEEc-CCCCCCC--CCCCccEEEEecC------------CcCCchhheeecCCEEEEeC
Confidence 1256677899999999 54 5444 4569999999983 2344568999999 999997
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-29 Score=257.67 Aligned_cols=243 Identities=15% Similarity=0.096 Sum_probs=184.4
Q ss_pred EeeHHHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecCh-
Q 010568 199 VYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPL- 277 (507)
Q Consensus 199 ~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl- 277 (507)
..+.+++.... +.......++++++++|||||||.||+|.++|.++......+...+ ...++..+|++++.+|+
T Consensus 72 ~~~~~~l~~~~---p~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~--~~~~~~~~d~~l~~~~~~ 146 (443)
T 2y4o_A 72 FSTKNDLRDNY---PFGLFAVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSI--RAAGGRPGDTLHNAFGYG 146 (443)
T ss_dssp CBCHHHHHTTT---TTTTCSSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHH--HHTTCCTTCEEEECSCCS
T ss_pred CCcHHHHHhhC---CCcccCCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHH--HHcCCCCCCEEEEeccCc
Confidence 44566665433 1123344678899999999999999999999999887665543321 12467889999999998
Q ss_pred HHHHHHHHHHHHHHcCCEEEEecC-CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhHHh
Q 010568 278 AHIFDRAIEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFH 356 (507)
Q Consensus 278 ~h~~g~~~~~~~l~~G~~v~l~~~-~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (507)
.|..++...+.++..|+++++.+. +++.+++.|+++++|+++++|+++..|++.........
T Consensus 147 ~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~----------------- 209 (443)
T 2y4o_A 147 LFTGGLGIHYGAERLGCMVVPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDP----------------- 209 (443)
T ss_dssp SSHHHHHHHHHHHHHTCEEECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCG-----------------
T ss_pred ccccHHHHHHHHHHcCCEEEECCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCc-----------------
Confidence 577777778888999999988765 99999999999999999999999999877543321100
Q ss_pred hhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhCCcEEeecccccCccc-eeccCCCCCc
Q 010568 357 NLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAG-TFVSLPNEMS 435 (507)
Q Consensus 357 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~~~v~~~YG~tE~~~~-~~~~~~~~~~ 435 (507)
..+++|.+++||+++++++.+.+++.+|+++++.||+||+++. +........
T Consensus 210 --------------------------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~~~- 262 (443)
T 2y4o_A 210 --------------------------AESSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLSEVMGPGVACECVETK- 262 (443)
T ss_dssp --------------------------GGSSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEEEETTTTEEEEEEECTTTC-
T ss_pred --------------------------ccCCceEEEECCCcCCHHHHHHHHHHhCcCEEeccCchhhcCCeEEeccCCCC-
Confidence 0037999999999999999999999889999999999998543 332222111
Q ss_pred cCCcccccccCceEEEeecCC-CccccCCCCCCceEEEecCCccccccCChhhhhhhcccCceeec-cEEEecC
Q 010568 436 MIGTVGPPVPNVDVCLESVPE-MEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG-MGVWEQL 507 (507)
Q Consensus 436 ~~~s~G~p~pg~~i~ivd~~~-~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~dgw~~TG-lg~~d~d 507 (507)
...+.|.+++.++|+| ++ +..+ +.|+.|||+|+|. +.+.|.++||+|| +|++|+|
T Consensus 263 --~g~~~~~~~~~~~i~d-~~~g~~~--~~G~~Gel~v~~~------------t~~~~p~~~y~TGDl~~~~~~ 319 (443)
T 2y4o_A 263 --DGPVIWEDHFYPEIID-PVTGEVL--PDGSQGELVFTSL------------TKEAMPVIRYRTRDLTALLPP 319 (443)
T ss_dssp --CSEEECTTTEEEEEEC-TTTCCBC--CTTCCEEEEEEES------------SCSSSCCSSEEEEEEECEECC
T ss_pred --CceEEccCCeEEEEEc-CCCCCCC--CCCCceEEEEeCC------------CcccChhheeecCCEEEEcCC
Confidence 1245567899999999 54 5544 4569999999983 2334568999999 9999975
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.1e-29 Score=246.48 Aligned_cols=226 Identities=15% Similarity=0.103 Sum_probs=175.7
Q ss_pred CCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecCh-HHHHHHHHHHHHHHcCCEEE
Q 010568 219 KKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPL-AHIFDRAIEEVFISNGAAIG 297 (507)
Q Consensus 219 ~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl-~h~~g~~~~~~~l~~G~~v~ 297 (507)
..++++++|+|||||||.||+|.++|.++......+... ....++..+|++++.+|+ +|.+++...+.++..|+.++
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~--~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~ 165 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSG--YQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFF 165 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTT--TTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEE
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhh--HHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEE
Confidence 467889999999999999999999999999888754322 233467889999999999 99999988888899999443
Q ss_pred EecCCHH-----------------------HHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhH
Q 010568 298 FWRGDVK-----------------------LLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYK 354 (507)
Q Consensus 298 l~~~~~~-----------------------~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (507)
..+.++. .+++.|+++++|+++++|+++..|++...
T Consensus 166 ~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~--------------------- 224 (369)
T 3hgu_A 166 SIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPE--------------------- 224 (369)
T ss_dssp CCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHH---------------------
T ss_pred CccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhh---------------------
Confidence 3333666 78889999999999999999999865311
Q ss_pred HhhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHH-Hhh-CCcEEeecccccCccceeccCCC
Q 010568 355 FHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLR-VVA-CAHVLQGYGLTETCAGTFVSLPN 432 (507)
Q Consensus 355 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~-~~~-~~~v~~~YG~tE~~~~~~~~~~~ 432 (507)
....++ +++|.+++||+++++++.+.++ +.+ ++++++.||+||+++++..+..
T Consensus 225 ----------------~~~~~~--------~~lr~i~~gGe~l~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~- 279 (369)
T 3hgu_A 225 ----------------VVLQMK--------QSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLI- 279 (369)
T ss_dssp ----------------HHHHHH--------HHCSEEEEESSCCCHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB-
T ss_pred ----------------hhcccc--------CCeeEEEECCccCCHHHHHHHHHHhCCCcEEEcccCchhhhcceecccc-
Confidence 111112 2799999999999999999999 888 8999999999999876643321
Q ss_pred CCccCCccccc------ccCceEEEeecC-CCccccCCCCCCceEEEec---CCccccccCChhhhhhhcccCceeec
Q 010568 433 EMSMIGTVGPP------VPNVDVCLESVP-EMEYDALSSTPRGEVCVKG---STVFSGYYKREDLTKEVMVDGWFHTG 500 (507)
Q Consensus 433 ~~~~~~s~G~p------~pg~~i~ivd~~-~~~~~~~~~g~~Gel~v~g---~~v~~gY~~~~~~~~~~~~dgw~~TG 500 (507)
.++|+| +|+++++|+| + +++.++ .|+.|||+|++ ...+.+|...+..+.....+||+.+|
T Consensus 280 -----~~~G~~~~~~~~~~~~~v~ivD-~~~g~~vp--~G~~GEl~vt~l~~~~~l~ry~tgD~~~~~~~~~g~~~d~ 349 (369)
T 3hgu_A 280 -----TSESQQVIYDSFSPFITYDVVD-SITAQTVE--YGERGNVIVTHLSPWAFYPRVAERDTAIRLPGVSGFAGDR 349 (369)
T ss_dssp -----CTTCSSCEEECCTTTEEEEEEC-TTTCSBCC--TTCEEEEEEEEEETTEEEEEEEEEEEEEEECCSTTCSSCE
T ss_pred -----ccCCCcccccCCCCCeEEEEEC-CCCCcCCC--CCCceEEEEEEcCcccccccccCCceEEEecCCCCCcCcc
Confidence 148899 9999999999 6 565444 56999999997 33467888776665555578898887
|
| >4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.19 Score=51.19 Aligned_cols=55 Identities=16% Similarity=0.234 Sum_probs=36.0
Q ss_pred CceEeeHHHHHhccccC-CCCC-CCCCCCCeEEEEeccCCC-CCCceeeeccHHHHHH
Q 010568 196 GLAVYSWDEFLQLGENK-QFDL-PVKKKNDICTIMYTSGTT-GDPKGVMVSNENIVTF 250 (507)
Q Consensus 196 ~~~~~~~~~l~~~~~~~-~~~~-~~~~~~~~a~i~~TSGtT-G~pK~v~~sh~~l~~~ 250 (507)
.+.+.+++++....... .-+. ....++.+.+..-||||| |.+|-+++|...+-..
T Consensus 65 ~VPi~~Yedl~pyIeRi~~Ge~~~iL~~~pi~~F~~SSGTT~g~~K~IP~T~e~l~~~ 122 (581)
T 4eql_A 65 NVPIVSYEDIKPYLDRVVNGESSDVISARTITGFLLSSGTSGGAQKMMPWNNKYLDNL 122 (581)
T ss_dssp HSCCBCHHHHHHHHHHHHTTCCGGGTCSSCCCEEEEEEEEETTEEEEEEECHHHHHHH
T ss_pred hCCCccHHHHHHHHHHHHcCCCCcccCCCCCCeEEeCCCCCCCCccccccCHHHHHHH
Confidence 44567777765433111 1111 223566777899999999 6799999999877553
|
| >4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera} | Back alignment and structure |
|---|
Probab=95.58 E-value=0.28 Score=50.24 Aligned_cols=54 Identities=17% Similarity=0.226 Sum_probs=35.7
Q ss_pred CceEeeHHHHHhccccC-CCCC-CCCCCCCeEEEEeccCCC-CCCceeeeccHHHHH
Q 010568 196 GLAVYSWDEFLQLGENK-QFDL-PVKKKNDICTIMYTSGTT-GDPKGVMVSNENIVT 249 (507)
Q Consensus 196 ~~~~~~~~~l~~~~~~~-~~~~-~~~~~~~~a~i~~TSGtT-G~pK~v~~sh~~l~~ 249 (507)
.+.+.+++++....... .-+. ....++.+.++.-||||| |+||.+.+|...+-.
T Consensus 71 ~VPv~~Yedl~p~ieRi~~Ge~~~il~~~~i~~f~~SSGTT~gk~K~IP~t~~~l~~ 127 (609)
T 4b2g_A 71 KIPVIKYEDLQPEIQRIANGDRSAILSAHPISEFLTSSGTSAGERKLMPTIQEELDR 127 (609)
T ss_dssp HSCCBCHHHHHHHHHHHHTTCCSSSSCSSCCCEEEEEEEEETTEEEEEEECTTHHHH
T ss_pred hCCCccHHHHHHHHHHHhcCCCCCccCCCCCCeEEeCCCCCCCCceeeecCHHHHHH
Confidence 34567777765432110 0111 233567778899999999 789999999887755
|
| >4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=93.19 E-value=1.1 Score=45.56 Aligned_cols=55 Identities=20% Similarity=0.190 Sum_probs=36.6
Q ss_pred cCceEeeHHHHHhccccC-CCC-CCCCCCCCeEEEEeccCCC-CCCceeeeccHHHHH
Q 010568 195 YGLAVYSWDEFLQLGENK-QFD-LPVKKKNDICTIMYTSGTT-GDPKGVMVSNENIVT 249 (507)
Q Consensus 195 ~~~~~~~~~~l~~~~~~~-~~~-~~~~~~~~~a~i~~TSGtT-G~pK~v~~sh~~l~~ 249 (507)
..+.+.+++++....... .-+ .....++.+.+..-||||| |++|-+.+|...+-.
T Consensus 69 ~~VPi~~Yedl~pyIeRi~~Ge~~~iL~~~pi~~f~~SSGTT~gk~K~IP~T~~~l~~ 126 (581)
T 4epl_A 69 SMVPLVTDVELEPYIKRMVDGDTSPILTGHPVPAISLSSGTSQGRPKFIPFTDELMEN 126 (581)
T ss_dssp HHSCCBCHHHHHHHHHHHHTTCCSSSSSSSCCSEEEEEEEEETTEEEEEEECHHHHHH
T ss_pred HhCCCccHHHHHHHHHHHHCCCCCCccCCCCcceEEecCCCCCCCccccccCHHHHHH
Confidence 345677787765432110 111 2234566778899999999 779999999887755
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* | Back alignment and structure |
|---|
Probab=92.75 E-value=0.85 Score=44.98 Aligned_cols=125 Identities=14% Similarity=0.049 Sum_probs=88.5
Q ss_pred CCCCCceeeEeeccCcCCce--EEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCc--hhhHHHHHHHHhcCCEEee
Q 010568 57 NPNNRMLGQREIVDGKAGKY--VWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNC--PEWIIGMEACNALGLHCVP 132 (507)
Q Consensus 57 ~pd~~a~~~~~~~~~~~~~~--~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~--~~~~~~~lA~~~~G~~~v~ 132 (507)
.++.++.+... .|.++.. ..+|.+.+...+..+++.+...|+.++|++...++.. ...+...++++..|+.+++
T Consensus 88 ~~~~~~~i~~T--SGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 165 (437)
T 2y27_A 88 PQDRISRIHAS--SGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIP 165 (437)
T ss_dssp CGGGCCEEEEC--CCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEEC
T ss_pred ChhHeEEEEEC--CCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEe
Confidence 34666655541 4444433 3689999998888888888889999999999988853 4445567888999999887
Q ss_pred ccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCC----C-CCCCccEEEEecCC
Q 010568 133 LYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFP----K-TTEHLKTIVSFSKV 184 (507)
Q Consensus 133 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~----~-~~~~~~~v~~~~~~ 184 (507)
++. .+.+.+...++..++.+++.....+..+.+... . ....++.++.-...
T Consensus 166 ~~~-~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~ 221 (437)
T 2y27_A 166 FGG-GQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEP 221 (437)
T ss_dssp CCS-CCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSC
T ss_pred CCC-CCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCcc
Confidence 765 478889999999999999988766555443211 1 12466666665544
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=92.28 E-value=1.1 Score=44.31 Aligned_cols=125 Identities=14% Similarity=0.029 Sum_probs=88.8
Q ss_pred CCCCCceeeEeeccCcCCce--EEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCc--hhhHHHHHHHHhcCCEEee
Q 010568 57 NPNNRMLGQREIVDGKAGKY--VWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNC--PEWIIGMEACNALGLHCVP 132 (507)
Q Consensus 57 ~pd~~a~~~~~~~~~~~~~~--~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~--~~~~~~~lA~~~~G~~~v~ 132 (507)
.++.++.+... .|.++.. ..+|.+.+...+..+++.+...|+.++|++...++-+ ...+...++++..|+.+++
T Consensus 90 ~~~~~~~i~~T--SGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~ 167 (443)
T 2y4o_A 90 PREQVVRVHAS--SGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVP 167 (443)
T ss_dssp CGGGCCEEEEE--CCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEEC
T ss_pred ChhheEEEEEC--CCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEE
Confidence 34566655441 4555543 3579999988888888888889999999999988853 4445567888999999887
Q ss_pred ccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCC----C-CCCCccEEEEecCC
Q 010568 133 LYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFP----K-TTEHLKTIVSFSKV 184 (507)
Q Consensus 133 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~----~-~~~~~~~v~~~~~~ 184 (507)
+++. +.+.+...++..++.+++.....+..+.+... . ....++.++.-+..
T Consensus 168 ~~~~-~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~ 223 (443)
T 2y4o_A 168 MSGG-QTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEP 223 (443)
T ss_dssp CCSC-CHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSC
T ss_pred CCCC-CHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCc
Confidence 7664 78888899999999999988766554443211 1 12566666665543
|
| >3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* | Back alignment and structure |
|---|
Probab=90.54 E-value=1.1 Score=44.07 Aligned_cols=123 Identities=11% Similarity=0.031 Sum_probs=88.2
Q ss_pred CCCceeeEeeccCcCCce--EEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCc--hhhHHHHHHHHhcCCEEeecc
Q 010568 59 NNRMLGQREIVDGKAGKY--VWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNC--PEWIIGMEACNALGLHCVPLY 134 (507)
Q Consensus 59 d~~a~~~~~~~~~~~~~~--~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~--~~~~~~~lA~~~~G~~~v~l~ 134 (507)
+.++++... .|.++.. ..+|.+.+...+..+++.+...|+.++|++....+-+ ...+..+++++..|+.+++.+
T Consensus 86 ~~~a~i~~T--SGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~ 163 (436)
T 3qov_A 86 RDGVRIHSS--SGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAA 163 (436)
T ss_dssp HHEEEEEEC--SCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCC
T ss_pred CCeEEEEEC--CCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCC
Confidence 455655441 4444433 3689999999888888888889999999999988753 344556788899999988776
Q ss_pred CCCChHHHHHHHhhcCccEEEecCCChhHHhhcC-----CCCCCCccEEEEecCC
Q 010568 135 DTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTF-----PKTTEHLKTIVSFSKV 184 (507)
Q Consensus 135 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~~~~~~~~v~~~~~~ 184 (507)
+. +.+.+...++..++.+++........+.+.. ......++.++.-+..
T Consensus 164 ~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~ 217 (436)
T 3qov_A 164 AG-NSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEP 217 (436)
T ss_dssp SC-CHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSC
T ss_pred CC-CHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCc
Confidence 54 6788889999999999998876665544331 1113567777766544
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=87.91 E-value=6.7 Score=39.20 Aligned_cols=122 Identities=11% Similarity=0.012 Sum_probs=85.8
Q ss_pred CCCCCceeeEeeccCcCCce--EEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchh-hHHHHHHHHhcCCEEeec
Q 010568 57 NPNNRMLGQREIVDGKAGKY--VWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPE-WIIGMEACNALGLHCVPL 133 (507)
Q Consensus 57 ~pd~~a~~~~~~~~~~~~~~--~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~-~~~~~lA~~~~G~~~v~l 133 (507)
.++.+|++... .|.++.. ..+|.+.+...+..+.. ..++.++|++...+|-.-. .+..+++++..|+.++..
T Consensus 161 ~~~d~a~i~~T--SGTTG~PKgv~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~ 235 (501)
T 3ipl_A 161 NLDDIASIMFT--SGTTGPQKAVPQTFRNHYASAIGCKE---SLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIV 235 (501)
T ss_dssp CTTSEEEEEEC--CTTTSCCCEEEEEHHHHHHHHHHHHH---HTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEC
T ss_pred CCCCeEEEEEC--CCCCCCCcEEEEeHHHHHHHHHHHHH---hhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeC
Confidence 46777777652 3444433 36798888776665543 4588999999988876533 344567888899988876
Q ss_pred cCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCC
Q 010568 134 YDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKV 184 (507)
Q Consensus 134 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 184 (507)
+ ..+.+.+...+++.++.+++........+.+........++.++.-+..
T Consensus 236 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~lr~i~~gG~~ 285 (501)
T 3ipl_A 236 D-KFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEPYNLQKILLGGAK 285 (501)
T ss_dssp S-SCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSCTTCCEEEECSSC
T ss_pred C-CCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCcCcccEEEEeCCC
Confidence 5 4788999999999999999998877766665544333466666665543
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* | Back alignment and structure |
|---|
Probab=85.13 E-value=3.1 Score=39.74 Aligned_cols=104 Identities=11% Similarity=0.004 Sum_probs=69.9
Q ss_pred CCCCCceeeEeeccCcCCce--EEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCC--chhhHHHHHHHHhcCCEEee
Q 010568 57 NPNNRMLGQREIVDGKAGKY--VWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVN--CPEWIIGMEACNALGLHCVP 132 (507)
Q Consensus 57 ~pd~~a~~~~~~~~~~~~~~--~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n--~~~~~~~~lA~~~~G~~~v~ 132 (507)
.++.++.+... .|.++.. ..+|.+.+...+..+++.+...|+.++|++..++|- +.-.+...+++...|+.+++
T Consensus 89 ~~~~~a~i~~T--SGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~ 166 (369)
T 3hgu_A 89 PADSHPQVYES--GGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFS 166 (369)
T ss_dssp CTTCCCEEEEE--CC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEEC
T ss_pred CccccEEEEEC--CCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEEC
Confidence 45666666542 4555543 357888888888777777777899999999999886 33334555666888985554
Q ss_pred ccCCCChH-----------------------HHHHHHhhcCccEEEecCCChhHH
Q 010568 133 LYDTLGAG-----------------------AVEFIICHSGVSIAFVEEKKIPEM 164 (507)
Q Consensus 133 l~~~~~~~-----------------------~l~~~l~~~~~~~vi~~~~~~~~~ 164 (507)
. ..++. .+...+++.++.+++.....+..+
T Consensus 167 ~--~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l 219 (369)
T 3hgu_A 167 I--DIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLREL 219 (369)
T ss_dssp C--CCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHH
T ss_pred c--cCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHH
Confidence 3 33444 666688999999998876554443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 507 | ||||
| d1pg4a_ | 643 | e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en | 8e-48 | |
| d1v25a_ | 534 | e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0 | 4e-42 | |
| d1ry2a_ | 640 | e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast | 6e-38 | |
| d1lcia_ | 541 | e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali | 6e-37 | |
| d3cw9a1 | 503 | e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc | 1e-21 | |
| d1amua_ | 514 | e.23.1.1 (A:) Phenylalanine activating domain of g | 7e-18 | |
| d1amua_ | 514 | e.23.1.1 (A:) Phenylalanine activating domain of g | 3e-08 | |
| d1mdba_ | 536 | e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B | 1e-15 | |
| d1mdba_ | 536 | e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B | 7e-05 |
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Score = 173 bits (439), Expect = 8e-48
Identities = 66/487 (13%), Positives = 143/487 (29%), Gaps = 88/487 (18%)
Query: 46 CWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGK 105
+ ++ N + + ++ +Y+E++ V + N + G+++
Sbjct: 74 AANCLDRHLQENGDRTAIIWEGDDTSQSKHI---SYRELHRDVCRFANTLLDLGIKKGDV 130
Query: 106 CGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEK------ 159
IY PE + M AC +G ++ AV I S + ++
Sbjct: 131 VAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGR 190
Query: 160 KIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVK 219
IP T V V +I+ W + ++ + +
Sbjct: 191 SIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAM- 249
Query: 220 KKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAH 279
D I+YTSG+TG PKGV+ + + + A + D+Y +
Sbjct: 250 NAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFD----YHPGDIYWCTADVGW 305
Query: 280 IFDRAIEEVF--ISNGAAIGFWRG-----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGL 332
+ ++ ++ GA + G + + + + + I P + +
Sbjct: 306 VTG-HSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRAL---- 360
Query: 333 NQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILS 392
+ +G K +E + + +R++ S
Sbjct: 361 -------------------------MAEGDKAIEGTDRS--------------SLRILGS 381
Query: 393 GAAPLTPHV-ETFLRVV--ACAHVLQGYGLTETCAGTFVSLPNEMSM-IGTVGPPVPNVD 448
P+ P E + + + V+ + TET LP + + G+ P V
Sbjct: 382 VGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQ 441
Query: 449 VCL-----ESVPEMEYDALSSTPRGEVCVKGS--TVFSGYYKREDLTKE---VMVDGWFH 498
L G + + S + + ++ +
Sbjct: 442 PALVDNEGHPQEGAT--------EGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYF 493
Query: 499 TG-MGVW 504
+G
Sbjct: 494 SGDGARR 500
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Score = 155 bits (392), Expect = 4e-42
Identities = 93/485 (19%), Positives = 159/485 (32%), Gaps = 85/485 (17%)
Query: 35 GFPA-PIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVN 93
FP+ + + WD A + + G+ TY EVY +++
Sbjct: 1 AFPSTMMDEELNLWDFLERAAALFGRKEV-----VSRLHTGEVHRTTYAEVYQRARRLMG 55
Query: 94 AIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSI 153
+R GV + G N + A +G L + +I+ H+ +
Sbjct: 56 GLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKV 115
Query: 154 AFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQ 213
+ P +L LKT+ F + + E Y A+ + +++ E
Sbjct: 116 LLFD----PNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEALGEEADPVRVPE--- 168
Query: 214 FDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVS 273
C + YT+GTTG PKGV+ S+ +V + L+ +DV +
Sbjct: 169 --------RAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLV---DGTALSEKDVVLP 217
Query: 274 YLPLAHIFDRAIEEVFISNGAAIGF--WRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSG 331
+P+ H+ + GA R D L+E T VP V +
Sbjct: 218 VVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALAD- 276
Query: 332 LNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLIL 391
+ + ++ L R ++
Sbjct: 277 ---------------YLESTGHRLKTL-----------------------------RRLV 292
Query: 392 SGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNE----------MSMIGTVG 441
G + + + V QGYGLTET + +++ G
Sbjct: 293 VGGSAAPRSLIARFERMGV-EVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTG 351
Query: 442 PPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV-DGWFHTG 500
P+P V + + E GEV +KG + GYY E+ T+ + DG+F TG
Sbjct: 352 LPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTG 410
Query: 501 -MGVW 504
+ VW
Sbjct: 411 DIAVW 415
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 145 bits (365), Expect = 6e-38
Identities = 74/483 (15%), Positives = 145/483 (30%), Gaps = 77/483 (15%)
Query: 46 CWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRT-CGVEERG 104
C++ + PN + + G+ TYKE+ + V +V + GV +
Sbjct: 61 CYNCVDRHALKTPNKKAIIFEGDEPGQGYSI---TYKELLEEVCQVAQVLTYSMGVRKGD 117
Query: 105 KCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSI-----AFVEEK 159
+Y PE II + A + +G ++ + ++ I +
Sbjct: 118 TVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGG 177
Query: 160 KIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVK 219
K+ E + + + + + W + +
Sbjct: 178 KVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKK-KYKTYYPCTPV 236
Query: 220 KKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAH 279
D ++YTSG+TG PKGV S + EDV+ + +
Sbjct: 237 DSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYT----FDTHQEDVFFTAGDIGW 292
Query: 280 IFDRAIEEVF--ISNGAAIGFWRG-----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGL 332
I V+ + G A + G + + I E K T F P L +
Sbjct: 293 ITG-HTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLL---- 347
Query: 333 NQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILS 392
+ G ++E + +R + S
Sbjct: 348 -------------------------KRAGDSYIENHSLK--------------SLRCLGS 368
Query: 393 GAAPLTPHV-ETFLRVVACA--HVLQGYGLTETCAGTFVSLPNEMSMI--GTVGPPVPNV 447
P+ V E + + ++ Y TE+ + L ++ + G+ P +
Sbjct: 369 VGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGI 428
Query: 448 DVCLESVPEMEYDALSSTPRGEVCVKGS--TVFSGYYKREDLTKEVMV---DGWFHTG-M 501
D + P + +S G + VK + + +K D + + G++ TG
Sbjct: 429 DAVVLD-PNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDG 487
Query: 502 GVW 504
Sbjct: 488 AAK 490
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Score = 141 bits (355), Expect = 6e-37
Identities = 87/475 (18%), Positives = 164/475 (34%), Gaps = 66/475 (13%)
Query: 37 PAPIPGME--SCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNA 94
PAP +E + + A++R G D + TY E +++ +++ A
Sbjct: 8 PAPFYPLEDGTAGEQLHKAMKRYALVP--GTIAFTDAHIEVNI--TYAEYFEMSVRLAEA 63
Query: 95 IRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIA 154
++ G+ + + N ++ + + +G+ P D + + S ++
Sbjct: 64 MKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVV 123
Query: 155 FVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQF 214
FV +K + ++L K K I+ SK + + + + L G N+
Sbjct: 124 FVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTF------VTSHLPPGFNEYD 177
Query: 215 DLP--VKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYV 272
+P + I IM +SG+TG PKGV + + + + + ++ + +
Sbjct: 178 FVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIF--GNQIIPDTAIL 235
Query: 273 SYLPLAHIFDRAIEEVFISNGAAIGFWR-GDVKLLLEDIGELKPTIFCAVPRVLDRIYSG 331
S +P H F ++ G + + +L L + + K VP +
Sbjct: 236 SVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKS 295
Query: 332 LNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLIL 391
K +
Sbjct: 296 T--------------------------------------------LIDKYDLSNLHEIAS 311
Query: 392 SGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCL 451
GA E + + QGYGLTET + ++ P G VG VP + +
Sbjct: 312 GGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILIT-PEGDDKPGAVGKVVPFFEAKV 370
Query: 452 ESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV-DGWFHTG-MGVW 504
+ + L RGE+CV+G + SGY + T ++ DGW H+G + W
Sbjct: 371 VDLDTGK--TLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYW 423
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Score = 95.5 bits (236), Expect = 1e-21
Identities = 69/461 (14%), Positives = 134/461 (29%), Gaps = 82/461 (17%)
Query: 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEE 102
M++ ++ R A R P++ L V + + T+ E+ V V + G+
Sbjct: 1 MQTVNEMLRRAATRAPDHCAL----AVPARGLRL---THAELRARVEAVAARLHADGLRP 53
Query: 103 RGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIP 162
+ + + N + +I + A + LG L L + + +I ++ A + +
Sbjct: 54 QQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGR-- 111
Query: 163 EMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKN 222
++ ++ + I + + P ++
Sbjct: 112 QVADAIFQSGSGARIIF------------------LGDLVRDGEPYSYGPPIEDPQREPA 153
Query: 223 DICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282
I YTSGTTG PK ++ + + + V + +V + +PL H+
Sbjct: 154 QPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMST---QVGLRHGRHNVVLGLMPLYHVVG 210
Query: 283 RAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLL 342
V ++ A G + + D +L L
Sbjct: 211 --FFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLD----------AL 258
Query: 343 KKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVE 402
+ S K +L R + A + V
Sbjct: 259 AAAAAHAGSSLKLDSL-----------------------------RHVTFAGATMPDAVL 289
Query: 403 TFLRVVACAHVLQGYGLTETCAGTFVSLPNEMS----MIGTVGPPVPNVDVCLESVPEME 458
+ + YG TE ++ P + + V E V E
Sbjct: 290 ETVHQHLPGEKVNIYGTTEAMNSLYMRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGE 349
Query: 459 YDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHT 499
L + + F GY + T E + DGW+ T
Sbjct: 350 EGEL-------IVAASDSAFVGYLNQPQATAEKLQDGWYRT 383
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Score = 83.8 bits (206), Expect = 7e-18
Identities = 38/206 (18%), Positives = 73/206 (35%), Gaps = 39/206 (18%)
Query: 38 APIPGMESCWDVFRMAVERNPNNRML--GQREIVDGKAGKYVWKTYKEVYDLVIKVVNAI 95
A P ++ +F V + PNN + ++ TY E+ ++
Sbjct: 17 AEYPRDKTIHQLFEEQVSKRPNNVAIVCENEQL-----------TYHELNVKANQLARIF 65
Query: 96 RTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAF 155
G+ + GI + IG+ A G VP+ +++I+ S +
Sbjct: 66 IEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLL 125
Query: 156 VEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFD 215
++ + + I+ G ++ +++ E
Sbjct: 126 TQKHLVHLI-------------------------HNIQFNGQVEIFEEDTIKIREGTNLH 160
Query: 216 LPVKKKNDICTIMYTSGTTGDPKGVM 241
+P K D+ ++YTSGTTG+PKG M
Sbjct: 161 VPS-KSTDLAYVIYTSGTTGNPKGTM 185
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Score = 53.7 bits (128), Expect = 3e-08
Identities = 24/118 (20%), Positives = 46/118 (38%), Gaps = 3/118 (2%)
Query: 387 VRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPN 446
++ +++ + +P + + YG TET + + IG P
Sbjct: 279 IQTLITAGSATSP--SLVNKWKEKVTYINAYGPTETTICATTWVATKE-TIGHSVPIGAP 335
Query: 447 VDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGMGVW 504
+ + + S GE+C+ G + GY+KR +LT + VD F G ++
Sbjct: 336 IQNTQIYIVDENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLY 393
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Score = 77.0 bits (188), Expect = 1e-15
Identities = 24/215 (11%), Positives = 72/215 (33%), Gaps = 21/215 (9%)
Query: 44 ESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEER 103
E+ D+ R + + R + + +Y+E+ ++ + G++++
Sbjct: 25 ETFGDLLRDRAAKYGD------RIAITCGNTHW---SYRELDTRADRLAAGFQKLGIQQK 75
Query: 104 GKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPE 163
+ + N E+ + A LG V + + + + + + + +
Sbjct: 76 DRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGF 135
Query: 164 MLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKND 223
++ + + + V E L+ + LP K +D
Sbjct: 136 DYRSLARQVQSKLPTLKNIIVAGE------------AEEFLPLEDLHTEPVKLPEVKSSD 183
Query: 224 ICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLL 258
+ + + G+TG K + ++++ + + +
Sbjct: 184 VAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC 218
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Score = 43.1 bits (100), Expect = 7e-05
Identities = 22/116 (18%), Positives = 39/116 (33%), Gaps = 3/116 (2%)
Query: 390 ILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDV 449
+ G A + ++ V + Q +G+ E E ++ T G P+ D
Sbjct: 303 LQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDE 362
Query: 450 CLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVD-GWFHTGMGVW 504
+ G + +G GYYK E+ + G++ TG V
Sbjct: 363 SRVWDDHDRD--VKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVR 416
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 507 | |||
| d1pg4a_ | 643 | Acetyl-CoA synthetase {Salmonella enterica [TaxId: | 100.0 | |
| d1v25a_ | 534 | Long chain fatty acid-CoA ligase TT0168 {Thermus t | 100.0 | |
| d1lcia_ | 541 | Luciferase {Firefly (Photinus pyralis) [TaxId: 705 | 100.0 | |
| d1ry2a_ | 640 | Acetyl-CoA synthetase {Baker's yeast (Saccharomyce | 100.0 | |
| d1amua_ | 514 | Phenylalanine activating domain of gramicidin synt | 100.0 | |
| d1mdba_ | 536 | Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil | 100.0 | |
| d3cw9a1 | 503 | 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId | 100.0 |
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Probab=100.00 E-value=1.5e-56 Score=472.92 Aligned_cols=404 Identities=14% Similarity=0.200 Sum_probs=321.2
Q ss_pred HHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHHHHHHh
Q 010568 46 CWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNA 125 (507)
Q Consensus 46 l~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~ 125 (507)
..++|+++++.+||++|+++. ..+.+..+++||+||.++++++|++|+++|+++||+|+++++|++++++++|||++
T Consensus 74 ~~n~ldrh~~~~~d~~Ali~~---~~~~~~~~~~TY~eL~~~v~~~A~~L~~~Gv~~Gd~V~i~~~n~~e~iv~~lA~~~ 150 (643)
T d1pg4a_ 74 AANCLDRHLQENGDRTAIIWE---GDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACAR 150 (643)
T ss_dssp HHHHTGGGHHHHTTSEEEEEE---CSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCEEEEEE---ecCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecccchHHHHHHHHHHH
Confidence 456788889999999999987 55556678999999999999999999999999999999999999999999999999
Q ss_pred cCCEEeeccCCCChHHHHHHHhhcCccEEEecCCCh---------hHHhhc-CCCCCCCccEEEEecCCChhhHHHHhhc
Q 010568 126 LGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKI---------PEMLKT-FPKTTEHLKTIVSFSKVKPEQREEIEKY 195 (507)
Q Consensus 126 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 195 (507)
+|++++|+++.++.+++.+++++++++++|+++... ...... .......+..++++....... ...
T Consensus 151 ~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~----~~~ 226 (643)
T d1pg4a_ 151 IGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDI----DWQ 226 (643)
T ss_dssp HTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCC----CCC
T ss_pred hCeEEEecCCCCCHHHHHHHHHhcCCCEEEEcchhhhhccccchhhhHHHHHhccccccceEEEEeccCCccc----ccc
Confidence 999999999999999999999999999999986421 111111 112235667777766432210 000
Q ss_pred CceEeeHHHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEec
Q 010568 196 GLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYL 275 (507)
Q Consensus 196 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~ 275 (507)
......+.+..... ..........++++++|+|||||||.||+|+++|.+++....... ....++.++|++++.+
T Consensus 227 ~~~~~~~~~~~~~~-~~~~~~~~~~~dd~a~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~----~~~~~~~~~d~~~~~~ 301 (643)
T d1pg4a_ 227 EGRDLWWRDLIEKA-SPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTF----KYVFDYHPGDIYWCTA 301 (643)
T ss_dssp BTTEEEHHHHHTTS-CSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHH----HHHTTCCTTCEEEECS
T ss_pred cccchhhhhhhccc-CcccCCCCCCCCCeEEEEeCCCcccCCCEEEEccHHHHHHHHHHH----HHhhCCCCCCEEEEeC
Confidence 11233444444433 223344456789999999999999999999999999765544421 2223688999999999
Q ss_pred ChHHHHHHHH-HHHHHHcCCEEEEecC-----CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHH
Q 010568 276 PLAHIFDRAI-EEVFISNGAAIGFWRG-----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNI 349 (507)
Q Consensus 276 pl~h~~g~~~-~~~~l~~G~~v~l~~~-----~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~ 349 (507)
|++|.+++.. ++.+|+.|+++++++. ++..+++.|+++++|+++++|++++.|++.....
T Consensus 302 p~~~~~g~~~~l~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~-------------- 367 (643)
T d1pg4a_ 302 DVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKA-------------- 367 (643)
T ss_dssp CTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGG--------------
T ss_pred ChHHHHHHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHHCCcEEEehHHHHHHHHhCcchh--------------
Confidence 9999999876 6788999999999753 7899999999999999999999999986532111
Q ss_pred HHHhHHhhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhC---CcEEeecccccCccce
Q 010568 350 AYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVAC---AHVLQGYGLTETCAGT 426 (507)
Q Consensus 350 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~---~~v~~~YG~tE~~~~~ 426 (507)
....+ .++||.++++|+++++++.+++.+.++ +++++.||+||+|+++
T Consensus 368 ---------------------~~~~d--------l~sLr~i~~~G~pl~~~~~~~~~~~~g~~~~~i~~~yG~TE~g~~~ 418 (643)
T d1pg4a_ 368 ---------------------IEGTD--------RSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFM 418 (643)
T ss_dssp ---------------------TTTCC--------CTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCS
T ss_pred ---------------------ccccC--------CCceEEEEEEeCCCCHHHHHHHHHHhCCCCceEEEeechhhccceE
Confidence 01111 148999999999999999999999874 7799999999998877
Q ss_pred eccCCCC-CccCCcccccccCceEEEeecCCCccccCCCCCCceEEEec--CCccccccCChhhhhhhc---ccCceeec
Q 010568 427 FVSLPNE-MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKG--STVFSGYYKREDLTKEVM---VDGWFHTG 500 (507)
Q Consensus 427 ~~~~~~~-~~~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g--~~v~~gY~~~~~~~~~~~---~dgw~~TG 500 (507)
+...+.. ..+++++|+|+||++++|+| ++|+.++. |+.|||+|+| |+++.|||++++.+.+.+ .+|||+||
T Consensus 419 ~~~~~~~~~~~~gs~G~p~~g~~v~ivd-~~g~~~~~--g~~Gel~v~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~TG 495 (643)
T d1pg4a_ 419 ITPLPGAIELKAGSATRPFFGVQPALVD-NEGHPQEG--ATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSG 495 (643)
T ss_dssp BCCCTTTCCBCTTCCBSBCTTCCEEEEC-TTCCBCCS--SEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEE
T ss_pred EecCCCccCCCCCccccccCCCEEEEEC-CCCCCCCC--CceEEEEEecCCCcccccccCChhhchhhhcccCCCeEEcC
Confidence 6654433 34568999999999999999 88776554 5899999999 578999999999888776 58999999
Q ss_pred -cEEEecC
Q 010568 501 -MGVWEQL 507 (507)
Q Consensus 501 -lg~~d~d 507 (507)
+|++|+|
T Consensus 496 Dl~~~d~d 503 (643)
T d1pg4a_ 496 DGARRDED 503 (643)
T ss_dssp EEEEECTT
T ss_pred CEEEECCC
Confidence 9999986
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=1.2e-55 Score=458.62 Aligned_cols=397 Identities=22% Similarity=0.304 Sum_probs=329.5
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHH
Q 010568 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120 (507)
Q Consensus 41 ~~~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~ 120 (507)
++..||.++|+++++++||++|+++. + ++.++++||+||.++++++|++|.+.|+++||+|+|+++|++++++++
T Consensus 8 ~~~~~l~~~l~~~a~~~pd~~av~~~---~--~g~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 82 (534)
T d1v25a_ 8 DEELNLWDFLERAAALFGRKEVVSRL---H--TGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAY 82 (534)
T ss_dssp CCCCCTHHHHHHHHHHSTTCEEEEEC---T--TSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHcCCCeEEEEe---c--CCceEEEcHHHHHHHHHHHHHHHHHCCcCCCCEEEEEeCCCHHHHHHH
Confidence 44568999999999999999999875 3 345678999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCceEe
Q 010568 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVY 200 (507)
Q Consensus 121 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 200 (507)
|||+++|++++|++|.++.+++.++++.++++.++++.............. ..++..+......... ..
T Consensus 83 lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----------~~ 151 (534)
T d1v25a_ 83 FAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGEL-KTVQHFVVMDEKAPEG----------YL 151 (534)
T ss_dssp HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGC-SSCCEEEESSSCCCTT----------CE
T ss_pred HHHHHhCcEEEecCCCCCHHHHHHHHHhhccccccccchhhhhHHHHhhcc-cccceeEEeecccccc----------cc
Confidence 999999999999999999999999999999999999988777655554433 5555555544332210 11
Q ss_pred eHHHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHHH
Q 010568 201 SWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHI 280 (507)
Q Consensus 201 ~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~ 280 (507)
.... . ...........++++++++|||||||.||+|.++|.+++....... ..........+++++.+|++|.
T Consensus 152 ~~~~-~---~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~---~~~~~~~~~~d~~~~~~p~~~~ 224 (534)
T d1v25a_ 152 AYEE-A---LGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAAS---LVDGTALSEKDVVLPVVPMFHV 224 (534)
T ss_dssp EHHH-H---CCSCCCCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTT---STTTTCCCTTCEEEECSCTTSH
T ss_pred cccc-c---ccccccccccccCCcEEEEEecCCCCCccccccccchhhhhhhhhh---hhcccccccccccccccchhhh
Confidence 1111 1 1112233455788999999999999999999999999987665432 2334467889999999999999
Q ss_pred HHHHHHHHHHHcCCEEEEecC--CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhHHhhh
Q 010568 281 FDRAIEEVFISNGAAIGFWRG--DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNL 358 (507)
Q Consensus 281 ~g~~~~~~~l~~G~~v~l~~~--~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 358 (507)
+++...+..+..|+.+++... ++..+...+.++++|++.++|.++..++........
T Consensus 225 ~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~--------------------- 283 (534)
T d1v25a_ 225 NAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGH--------------------- 283 (534)
T ss_dssp HHHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTC---------------------
T ss_pred ccccccceeeeecceeeeccccccccccchhhhhccccccccCchhhhhhhhhhccccc---------------------
Confidence 999998888888888777654 899999999999999999999999998765433321
Q ss_pred hcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhCCcEEeecccccCccceeccCCCCC----
Q 010568 359 KKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEM---- 434 (507)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~---- 434 (507)
..++||.+++||++++.+..+.+++ ++.++++.||+||++..+........
T Consensus 284 ------------------------~~~~lr~~~~gG~~~~~~~~~~~~~-~~~~i~~~yG~te~~~~~~~~~~~~~~~~~ 338 (534)
T d1v25a_ 284 ------------------------RLKTLRRLVVGGSAAPRSLIARFER-MGVEVRQGYGLTETSPVVVQNFVKSHLESL 338 (534)
T ss_dssp ------------------------CCSSCCEEEECSSCCCHHHHHHHHH-TTCEEEEEEECGGGSSEEEECCCCGGGTTS
T ss_pred ------------------------cccceeEEEEecCCCCHHHHHHHHH-hCCeeeeeccccccccceeecccCcccccc
Confidence 1248999999999999999999886 58999999999999998876544321
Q ss_pred ------ccCCcccccccCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhc-ccCceeec-cEEEec
Q 010568 435 ------SMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTG-MGVWEQ 506 (507)
Q Consensus 435 ------~~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~-~dgw~~TG-lg~~d~ 506 (507)
..++++|+|+||++++|+| ++++.++.+.++.|||+|+|++++.||+++++.+.+.| .||||+|| +|++|+
T Consensus 339 ~~~~~~~~~~~~G~p~~g~~~~i~d-~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~t~~~~~~dg~~~TGDlg~~~~ 417 (534)
T d1v25a_ 339 SEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDE 417 (534)
T ss_dssp CHHHHHHHHTSCBEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECT
T ss_pred CccccccccccceeccCCcEEEEEC-CCCCCCCCCCCeeEEEEEcCCcccceecCChhhhhhhcccCCCCccCceeEECC
Confidence 2246899999999999999 99999999888999999999999999999999999999 89999999 999998
Q ss_pred C
Q 010568 507 L 507 (507)
Q Consensus 507 d 507 (507)
|
T Consensus 418 ~ 418 (534)
T d1v25a_ 418 E 418 (534)
T ss_dssp T
T ss_pred C
Confidence 6
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Probab=100.00 E-value=3.9e-54 Score=447.67 Aligned_cols=407 Identities=20% Similarity=0.304 Sum_probs=319.3
Q ss_pred CCCCCCCCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhh
Q 010568 37 PAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEW 116 (507)
Q Consensus 37 ~~~~~~~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~ 116 (507)
|..+-+..|++++|.+++++++++|+.+... +...+ +++||+||.++++++|++|+++|+++||+|+|+++|++++
T Consensus 10 p~~p~~~~t~~~~l~~~~~~~~~~P~~~a~~--d~~~~--~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~ns~e~ 85 (541)
T d1lcia_ 10 PFYPLEDGTAGEQLHKAMKRYALVPGTIAFT--DAHIE--VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQF 85 (541)
T ss_dssp CSSCCCSSCHHHHHHHHHHHHHTSTTCEEEE--ETTTC--CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCSST
T ss_pred CCCCCCCCCHHHHHHHHHHhhCCCCCeEEEE--eCCCC--eEeeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHH
Confidence 3344556799999999999985555443220 22211 5699999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcC
Q 010568 117 IIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYG 196 (507)
Q Consensus 117 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 196 (507)
++++|||+++|++++|+++.++.+++.++++.++++++|++++....+.+..... +..+.+++++......
T Consensus 86 ~v~~lA~~~~G~i~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-------- 156 (541)
T d1lcia_ 86 FMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKL-PIIQKIIIMDSKTDYQ-------- 156 (541)
T ss_dssp HHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHC-TTCCEEEETTCSSCBT--------
T ss_pred HHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhccceEEeeeccccccchhccccc-cccceeeeecCCcccc--------
Confidence 9999999999999999999999999999999999999999998877666654433 6677777776543211
Q ss_pred ceEeeHHHHHhcccc------CCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcE
Q 010568 197 LAVYSWDEFLQLGEN------KQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDV 270 (507)
Q Consensus 197 ~~~~~~~~l~~~~~~------~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~ 270 (507)
....+.++...... ...+.....++++++++|||||||.||+|.++|.+++.........+ ........++
T Consensus 157 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~--~~~~~~~~~~ 233 (541)
T d1lcia_ 157 -GFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPI--FGNQIIPDTA 233 (541)
T ss_dssp -TBEEHHHHHHHHSCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTT--TSCCCCTTCE
T ss_pred -ccchhhhhhhhhccccccccccCccccCCCCceEEEEeeccccccccccccccchhhhhhhhhhhhc--cccccccccc
Confidence 23344443332211 11223334678899999999999999999999999988766643322 2335778999
Q ss_pred EEEecChHHHHHHHHHHHHHHcCCEEEEecC-CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHH
Q 010568 271 YVSYLPLAHIFDRAIEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNI 349 (507)
Q Consensus 271 ~l~~~pl~h~~g~~~~~~~l~~G~~v~l~~~-~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~ 349 (507)
+++.+|++|.+++...+..+..++.++.... +....+..+.++++|.++++|.++..++.......
T Consensus 234 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~~------------- 300 (541)
T d1lcia_ 234 ILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDK------------- 300 (541)
T ss_dssp EEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEECCHHHHHHHHHCSCGGG-------------
T ss_pred ccccccccccccccccccccccccccccccccccchhHHHHhhhhccccccCccccccccccccccc-------------
Confidence 9999999999999988888888888887765 89999999999999999999999988765211110
Q ss_pred HHHhHHhhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhC-CcEEeecccccCccceec
Q 010568 350 AYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVAC-AHVLQGYGLTETCAGTFV 428 (507)
Q Consensus 350 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~-~~v~~~YG~tE~~~~~~~ 428 (507)
. ..++++.+++||+++++...+.+.+.++ ..+++.||+||+++.++.
T Consensus 301 ------------------------~--------~~~~l~~v~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~ 348 (541)
T d1lcia_ 301 ------------------------Y--------DLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILI 348 (541)
T ss_dssp ------------------------S--------CCTTCCEEECTTCCCCHHHHHHHHHHTTCSCCBCEECCGGGSSCSEE
T ss_pred ------------------------c--------ccccceEEEecccccccccccccccccCCceeeecCCccccCceEEe
Confidence 0 1138999999999999999999999886 468999999999998887
Q ss_pred cCCCCCccCCcccccccCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhc-ccCceeec-cEEEec
Q 010568 429 SLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTG-MGVWEQ 506 (507)
Q Consensus 429 ~~~~~~~~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~-~dgw~~TG-lg~~d~ 506 (507)
....... ++++|+|+||++++|+|.+++. +++.|+.|||+|+|++++.||+++++.+...+ .+|||+|| +|++|+
T Consensus 349 ~~~~~~~-~~svG~p~~~~~~~i~d~d~~~--~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~TGDl~~~~~ 425 (541)
T d1lcia_ 349 TPEGDDK-PGAVGKVVPFFEAKVVDLDTGK--TLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDE 425 (541)
T ss_dssp CCCC----CCCCBEECTTCEEEEECTTTCC--BCCTTCCEEEEEESTTSCSEETTBHHHHHHHBCTTSCEEEEEEEEECT
T ss_pred cCcccCC-CCccccccCCCEEEEEECCCCc--CCCCCCeEEEEEccCccCCeeCCChhhhhhcccCCccccCCCeeEEcC
Confidence 7665544 4899999999999999933344 44456999999999999999999999998888 78999999 999997
Q ss_pred C
Q 010568 507 L 507 (507)
Q Consensus 507 d 507 (507)
|
T Consensus 426 ~ 426 (541)
T d1lcia_ 426 D 426 (541)
T ss_dssp T
T ss_pred C
Confidence 6
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.7e-54 Score=459.13 Aligned_cols=408 Identities=17% Similarity=0.212 Sum_probs=319.6
Q ss_pred CCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHH-HCCCCCCCEEEEEeCCchhhHHHHHH
Q 010568 44 ESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIR-TCGVEERGKCGIYGVNCPEWIIGMEA 122 (507)
Q Consensus 44 ~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~-~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (507)
+...++|+++++++||++|+++. ..+++..+++||+||.++++++|++|+ ++|+++||+|+|+++|++++++++||
T Consensus 59 N~~~n~ldr~a~~~pd~~Ali~~---~~~~g~~~~~Ty~eL~~~v~~~A~~L~~~~Gv~~Gd~V~i~~~n~~e~~~~~lA 135 (640)
T d1ry2a_ 59 NACYNCVDRHALKTPNKKAIIFE---GDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLA 135 (640)
T ss_dssp CHHHHHTHHHHTTCTTSEEEEEE---CSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHH
T ss_pred hHHHHHHHHHHhhCCCCEEEEEE---ecCCCCeeEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence 34588899999999999999986 555666789999999999999999997 68999999999999999999999999
Q ss_pred HHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCCh--------h-HHhhcCCCCCCCccEEEEecCCChhhHHHHh
Q 010568 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKI--------P-EMLKTFPKTTEHLKTIVSFSKVKPEQREEIE 193 (507)
Q Consensus 123 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~--------~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 193 (507)
|+++|++++|+++.++.+++.++++++++++++++.... . .+....... ..+.....+........ .
T Consensus 136 ~~~~Gav~vpi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~ 211 (640)
T d1ry2a_ 136 ISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRET-PGVRHVLVYRKTNNPSV---A 211 (640)
T ss_dssp HHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSC-TTCCEEEEECSSCCSSC---C
T ss_pred hccCceEeecCCCCCCHHHHHHHHHhhhccccccchhhhhccchhhhHHHHHhhhhhh-cccceeeeecccccccc---c
Confidence 999999999999999999999999999999999986432 1 222222222 44444444432211100 0
Q ss_pred hcCceEeeHHHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEE
Q 010568 194 KYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVS 273 (507)
Q Consensus 194 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~ 273 (507)
........+....... .......+..++++++|+|||||||.||||+++|.+++.+...... ....+..+|++++
T Consensus 212 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~h~~~~~~~~~~~~----~~~~~~~~d~~l~ 286 (640)
T d1ry2a_ 212 FHAPRDLDWATEKKKY-KTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMR----YTFDTHQEDVFFT 286 (640)
T ss_dssp CCSSSEEEHHHHHTTS-CSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHH----HHSCCCSSCEEEE
T ss_pred cccccccccccccccc-ccccccCCcccccCCEEEECCCCCCCCcceeeccccHHHHHHHHHH----hhcCCCcccceee
Confidence 0001122222222222 2233344556789999999999999999999999998776655322 2336889999999
Q ss_pred ecChHHHHHHHH-HHHHHHcCCEEEEecC-----CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHH
Q 010568 274 YLPLAHIFDRAI-EEVFISNGAAIGFWRG-----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLF 347 (507)
Q Consensus 274 ~~pl~h~~g~~~-~~~~l~~G~~v~l~~~-----~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~ 347 (507)
.+|++|.+++.. ++.++..|+++++.+. ++..+++.|+++++|+++++|++++.|.+....
T Consensus 287 ~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~------------- 353 (640)
T d1ry2a_ 287 AGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDS------------- 353 (640)
T ss_dssp CSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTT-------------
T ss_pred ccchhhhhhHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHhCccEEEcChHHHHHHHhcccc-------------
Confidence 999999999875 7788999999888753 789999999999999999999999887431100
Q ss_pred HHHHHhHHhhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhC---CcEEeecccccCcc
Q 010568 348 NIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVAC---AHVLQGYGLTETCA 424 (507)
Q Consensus 348 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~---~~v~~~YG~tE~~~ 424 (507)
..+..++ ++||.+++||+++++++.+++++.+| ..+++.||+||++.
T Consensus 354 ----------------------~~~~~~l--------~sLr~v~~gG~~l~~~~~~~~~~~~g~~~~~i~~~yg~te~~~ 403 (640)
T d1ry2a_ 354 ----------------------YIENHSL--------KSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGS 403 (640)
T ss_dssp ----------------------SSSSCCC--------TTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCS
T ss_pred ----------------------ccccCCC--------CceEEEEEecccCcHHHHHHHHHhcCCCcceEEeeeccccccc
Confidence 0011111 38999999999999999999999885 56999999999988
Q ss_pred ceeccCCCC--CccCCcccccccCceEEEeecCCCccccCCCCCCceEEEec--CCccccccCChhhhhhhc---ccCce
Q 010568 425 GTFVSLPNE--MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKG--STVFSGYYKREDLTKEVM---VDGWF 497 (507)
Q Consensus 425 ~~~~~~~~~--~~~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g--~~v~~gY~~~~~~~~~~~---~dgw~ 497 (507)
.+....... ..+++++|+|+||++++|+| ++++....+.++.|||+++| |+++.|||++++.+.+.| .+|||
T Consensus 404 ~~~~~~~~~~~~~~~gs~G~p~~g~~~~i~d-~~~~~~~~~~~~~Gel~i~~~~p~~~~gy~~~~e~t~~~~~~~~~gw~ 482 (640)
T d1ry2a_ 404 HLVTPLAGGVTPMKPGSASFPFFGIDAVVLD-PNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYY 482 (640)
T ss_dssp CSEECCTTTCCCCCTTCCCEECTTCCEEEEC-SSSTTCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSE
T ss_pred ccccccCCCcCCCCCcccccccCCceEEEEe-CCCCcccCCCCceEEEEEEecCCCcccccccCHHHHHhhhccCCCCeE
Confidence 776655443 34568999999999999999 77776666666789999998 689999999999999888 35999
Q ss_pred eec-cEEEecC
Q 010568 498 HTG-MGVWEQL 507 (507)
Q Consensus 498 ~TG-lg~~d~d 507 (507)
+|| +|++|+|
T Consensus 483 ~TGDlg~~d~d 493 (640)
T d1ry2a_ 483 FTGDGAAKDKD 493 (640)
T ss_dssp EEEEEEEECTT
T ss_pred EcCCceeECCC
Confidence 999 9999986
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Probab=100.00 E-value=1.9e-50 Score=417.14 Aligned_cols=379 Identities=18% Similarity=0.244 Sum_probs=308.6
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCC
Q 010568 33 KDGFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVN 112 (507)
Q Consensus 33 ~~~~~~~~~~~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n 112 (507)
++......+...||.++|+++|+++||++|+++. + +++||+||.++++++|++|+++|+++||+|+++++|
T Consensus 12 ~~~~~~~~~~~~tl~~l~~~~a~~~Pd~~Al~~~----~-----~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~Vai~~~n 82 (514)
T d1amua_ 12 VNNTKAEYPRDKTIHQLFEEQVSKRPNNVAIVCE----N-----EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEK 82 (514)
T ss_dssp TTCCCCCCCTTCCHHHHHHHHHHHCTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCS
T ss_pred hcCCCCCCCCCCcHHHHHHHHHHhCCCCeEEEEC----C-----eeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCC
Confidence 3455566778899999999999999999999974 3 579999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHH
Q 010568 113 CPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEI 192 (507)
Q Consensus 113 ~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 192 (507)
++++++++|||+++|++++|+++.++.+++.++++.++++++|++......+....... .......
T Consensus 83 ~~~~v~~~la~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~-----~~~~~~~--------- 148 (514)
T d1amua_ 83 SIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQFNG-----QVEIFEE--------- 148 (514)
T ss_dssp SHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCCCS-----EEEECCC---------
T ss_pred CHHHHHHHHHHHHhCcEEEEeCCCCCHHHHHHHHhccCCcEEEEehhhhhhhhhhcccc-----ccccccc---------
Confidence 99999999999999999999999999999999999999999999987666554433211 1111111
Q ss_pred hhcCceEeeHHHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEE
Q 010568 193 EKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYV 272 (507)
Q Consensus 193 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l 272 (507)
.............+..++++++|+|||||||.||+|.++|.++......... .......++++
T Consensus 149 ------------~~~~~~~~~~~~~p~~~~d~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~-----~~~~~~~d~~l 211 (514)
T d1amua_ 149 ------------DTIKIREGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFEN-----SLNVTEKDRIG 211 (514)
T ss_dssp ------------STTTTSCCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHH-----TSCCCTTCEEE
T ss_pred ------------ccccccccccCCCCCCcccceEEEEccCCCCCcccccccccccccccccccc-----ccccccccccc
Confidence 1111111222233456889999999999999999999999999999888544 44889999999
Q ss_pred EecChHHHHHHHHHHHHHHcCCEEEEecC----CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHH
Q 010568 273 SYLPLAHIFDRAIEEVFISNGAAIGFWRG----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFN 348 (507)
Q Consensus 273 ~~~pl~h~~g~~~~~~~l~~G~~v~l~~~----~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~ 348 (507)
+.+|++|.+++..++.++..|+++++... +....++.+..+.++.+..+|..+.....
T Consensus 212 ~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 273 (514)
T d1amua_ 212 QFASISFDASVWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDP------------------ 273 (514)
T ss_dssp ECSCTTSTHHHHHHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCT------------------
T ss_pred ceeccccccccccccccccccccccccccccccchhhhhhhhhhhhcccccceeeecccccc------------------
Confidence 99999999999999999999999988753 67888899999999999999876543100
Q ss_pred HHHHhHHhhhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhCCcEEeecccccCccceec
Q 010568 349 IAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFV 428 (507)
Q Consensus 349 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~~~v~~~YG~tE~~~~~~~ 428 (507)
....+++.+++||+++++++.+++.+ +..+++.||+||++.+++.
T Consensus 274 ---------------------------------~~~~~l~~~~~~G~~~~~~~~~~~~~--~~~~~~~yG~tE~~~~~~~ 318 (514)
T d1amua_ 274 ---------------------------------ERILSIQTLITAGSATSPSLVNKWKE--KVTYINAYGPTETTICATT 318 (514)
T ss_dssp ---------------------------------TTCCSCSEEEEESSCCCHHHHHHHTT--TSEEEEEECCGGGSSCSEE
T ss_pred ---------------------------------cccccccEEEEecccCCHHHhhhhcc--ceeEEEeeccccCceeeee
Confidence 01147899999999999999887766 6799999999999988766
Q ss_pred cCCCC--CccCCcccccccCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhcc-------cCceee
Q 010568 429 SLPNE--MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV-------DGWFHT 499 (507)
Q Consensus 429 ~~~~~--~~~~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~-------dgw~~T 499 (507)
..... .....+.|.+.++..+.+.| ++++.++.+ +.|||+|+||+++.||+++++.+...|. ||||+|
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~~~~~g--~~GEl~v~~~~~~~gY~~~~~~~~~~~~~~~~~~~~~~~~T 395 (514)
T d1amua_ 319 WVATKETIGHSVPIGAPIQNTQIYIVD-ENLQLKSVG--EAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKT 395 (514)
T ss_dssp EECCSSCCCSSCCCBEECTTEEEEEEC-TTSCBCCTT--CEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEE
T ss_pred ccccccccCcccccccceeeeeEeeec-ccceecCCC--CeeEEEEccCcccccccccccccceeeEeccccCCCceEEE
Confidence 55443 23346789999999999999 877766665 8999999999999999999999998872 679999
Q ss_pred c-cEEEecC
Q 010568 500 G-MGVWEQL 507 (507)
Q Consensus 500 G-lg~~d~d 507 (507)
| +|++|+|
T Consensus 396 GD~g~~d~~ 404 (514)
T d1amua_ 396 GDQARWLSD 404 (514)
T ss_dssp EEEEEECTT
T ss_pred CCEEEECCC
Confidence 9 9999986
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=1.8e-48 Score=404.15 Aligned_cols=387 Identities=15% Similarity=0.180 Sum_probs=310.0
Q ss_pred CCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHHHHH
Q 010568 44 ESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEAC 123 (507)
Q Consensus 44 ~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~ 123 (507)
.||.++|+++++++||++|+++. + +++||+||.++++++|++|+++|+++||+|+|+++|++++++++|||
T Consensus 25 ~tl~~~l~~~a~~~pd~~Al~~~---~------~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~ 95 (536)
T d1mdba_ 25 ETFGDLLRDRAAKYGDRIAITCG---N------THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFAL 95 (536)
T ss_dssp CCHHHHHHHHHHHHTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCCCeEEEEC---C------EeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHHHH
Confidence 69999999999999999999864 3 57999999999999999999999999999999999999999999999
Q ss_pred HhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHH----hhcCCCCCCCccEEEEecCCChhhHHHHhhcCceE
Q 010568 124 NALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEM----LKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAV 199 (507)
Q Consensus 124 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 199 (507)
+++|++++|++|.++.+++.++++.++++.+++++...... ........+.+...+....... .
T Consensus 96 ~~~G~i~vpl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~ 163 (536)
T d1mdba_ 96 FRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEE------------F 163 (536)
T ss_dssp HHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCTT------------S
T ss_pred HHhCcEEEecCCCCCHHHHHHHHHhhccceEeccchhhhhhhhhhhhhhhhccccccceeeeecccc------------c
Confidence 99999999999999999999999999999999986432211 0000001122222222221111 1
Q ss_pred eeHHHHHhccccCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChHH
Q 010568 200 YSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAH 279 (507)
Q Consensus 200 ~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h 279 (507)
..++++. ......+...++++++|+|||||||.||+|.+||.++..++..+...+ .+..+|++++..|+.|
T Consensus 164 ~~~~~~~----~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~-----~~~~~d~~l~~~~~~~ 234 (536)
T d1mdba_ 164 LPLEDLH----TEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-----WLDHSTVYLAALPMAH 234 (536)
T ss_dssp EEGGGCC----CCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECSCTTS
T ss_pred cchhhcc----cCCcCCCccCccchHHhhhcccccccceeccccccccccccccccccc-----cccccccccccccccc
Confidence 2222221 223344556789999999999999999999999999999999866655 7899999999999999
Q ss_pred HHHHHH--HHHHHHcCCEEEEecC-CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhHHh
Q 010568 280 IFDRAI--EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFH 356 (507)
Q Consensus 280 ~~g~~~--~~~~l~~G~~v~l~~~-~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (507)
.+++.. ....+..|.+++..+. ++..++..+++++++.+..+|..+..+..........
T Consensus 235 ~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 296 (536)
T d1mdba_ 235 NYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDD------------------ 296 (536)
T ss_dssp HHHHHSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCC------------------
T ss_pred ccceeeccccccccccccccccCCCCHHHHHHHHhhhccccccccchhhhhhhhhccccccc------------------
Confidence 999864 3444556777776665 9999999999999999999999998876543332111
Q ss_pred hhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhCCcEEeecccccCccceeccCCCCCcc
Q 010568 357 NLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSM 436 (507)
Q Consensus 357 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~ 436 (507)
.++++.+++||+++++.+.+++.+.++...+..|+.+|.+..+..........
T Consensus 297 ---------------------------~~~~~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (536)
T d1mdba_ 297 ---------------------------LSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEII 349 (536)
T ss_dssp ---------------------------CTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCTTSCHHHH
T ss_pred ---------------------------cCcceeEEEeccccccccccchhhccCceeeeccccccccccccccccccccc
Confidence 13789999999999999999999999999999999999877666655555555
Q ss_pred CCcccccccCceEEEeecCCCccccCCCCCCceEEEecCCccccccCChhhhhhhc-ccCceeec-cEEEecC
Q 010568 437 IGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTG-MGVWEQL 507 (507)
Q Consensus 437 ~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~-~dgw~~TG-lg~~d~d 507 (507)
.+++|.|+++....+++.++++.++ .++.|||+++|+.++.||+++++.+...+ .+|||+|| ++++|+|
T Consensus 350 ~~~~g~p~~~~~~~~v~~~~g~~~~--~~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~tGD~~~~~~d 420 (536)
T d1mdba_ 350 VNTQGKPMSPYDESRVWDDHDRDVK--PGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRD 420 (536)
T ss_dssp HHCCCEESSTTCEEEEECTTSCBCC--TTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTT
T ss_pred cCCcccCCCCcceEEEEcCCCCeec--ccccceeecCCCccccccccccccccccccccCccccCccccccCC
Confidence 6889999876655555525555444 45999999999999999999999999888 78999999 9999987
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Probab=100.00 E-value=1.3e-45 Score=378.82 Aligned_cols=384 Identities=19% Similarity=0.206 Sum_probs=304.1
Q ss_pred CCCHHHHHHHHHHhCCCCCceeeEeeccCcCCceEEEeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCchhhHHHHHH
Q 010568 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (507)
Q Consensus 43 ~~tl~~~l~~~~~~~pd~~a~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (507)
++|++++|+++++++||++|+++. +.. +++||+||.++++++|++|+++|+++||+|+|+++|++++++++||
T Consensus 1 ~~ti~~~l~~~a~~~pd~~al~~~---~~~----~~~Ty~el~~~~~~~a~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA 73 (503)
T d3cw9a1 1 MQTVNEMLRRAATRAPDHCALAVP---ARG----LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILA 73 (503)
T ss_dssp CCCHHHHHHHHHHHSTTSEEEEEG---GGT----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCeEEEEC---CCC----cEEeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHH
Confidence 589999999999999999999976 443 6799999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeeccCCCChHHHHHHHhhcCccEEEecCCChhHHhhcCCCCCCCccEEEEecCCChhhHHHHhhcCceEeeH
Q 010568 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSW 202 (507)
Q Consensus 123 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 202 (507)
|+++|++++|++|.++.+++.+++++++++.+|++............ .....++ .+
T Consensus 74 ~~~~G~v~vpi~~~~~~~~i~~~l~~~~~~~~i~~~~~~~~~~~~~~---~~~~~~i---------------------~~ 129 (503)
T d3cw9a1 74 LHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQS---GSGARII---------------------FL 129 (503)
T ss_dssp HHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEESSCHHHHHHHHHT---TCCCEEE---------------------EH
T ss_pred HHHhCcEEEEeCCCCCHHHHHHHHHhcCCcEEEeecchHHHHHHhhh---ccccccc---------------------cc
Confidence 99999999999999999999999999999999998764322111111 1122222 23
Q ss_pred HHHHhccc----cCCCCCCCCCCCCeEEEEeccCCCCCCceeeeccHHHHHHHhhhhhhhhhccccCCCCcEEEEecChH
Q 010568 203 DEFLQLGE----NKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLA 278 (507)
Q Consensus 203 ~~l~~~~~----~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~ 278 (507)
.++..... ..........++++++++|||||||.||+|.++|.++...+......+ .......+.++..+|+.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~p~~ 206 (503)
T d3cw9a1 130 GDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV---GLRHGRHNVVLGLMPLY 206 (503)
T ss_dssp HHHEETTEECCCSCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEGGGHHHHHHHHHHTS---CCCSSTTCEEEECSCTT
T ss_pred hhhhhhhcccccCCccccccchhhhhhhhcccccccccccccccccchhhhhhhhccccc---cccccccccccccCccc
Confidence 33332221 122333455788999999999999999999999999998887754332 33556778999999999
Q ss_pred HHHHHHH-HHHHHHcCCEEEEecC-CHHHHHHHhhhhCCeEEecCcHHHHHHHHHHHHhhhccchhHHHHHHHHHHhHHh
Q 010568 279 HIFDRAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFH 356 (507)
Q Consensus 279 h~~g~~~-~~~~l~~G~~v~l~~~-~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (507)
|..+... .+.+...++.+++.+. ++..++..+.+++++++..+|..+..+..........
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 268 (503)
T d3cw9a1 207 HVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSS------------------ 268 (503)
T ss_dssp SHHHHHTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHHHTCTT------------------
T ss_pred cccccccccccccccccccccccccChHHhhhhhhhceeecccccccccccccccccccccc------------------
Confidence 8877765 5566677777776665 9999999999999999999999998876543332211
Q ss_pred hhhcCCCCCCCchhhhHHhHHHHHHHcCCceEEEEEcCCCCCHHHHHHHHHhhCCcEEeecccccCccceeccCCCCCcc
Q 010568 357 NLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSM 436 (507)
Q Consensus 357 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~l~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~ 436 (507)
...++||.+++||+++++++...+...++..+.+.||++|++..+..........
T Consensus 269 -------------------------~~~~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~~yg~~e~~~~~~~~~~~~~~~ 323 (503)
T d3cw9a1 269 -------------------------LKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLYMRQPKTGTE 323 (503)
T ss_dssp -------------------------CCCTTCCEEEECSSCCCHHHHHHHHHHCCSEEEEEEEETTTEEEEEEESCSSSSE
T ss_pred -------------------------ccccceEEEEeccccccccccccccccccccccccccccccceeeeecccccccc
Confidence 1114799999999999999999999999999999999999988777666555433
Q ss_pred CCcccccccCceEEEeecCCCccccCCCCCCceEEEec-CCccccccCChhhhhhhcccCceeec-cEEEecC
Q 010568 437 IGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKG-STVFSGYYKREDLTKEVMVDGWFHTG-MGVWEQL 507 (507)
Q Consensus 437 ~~s~G~p~pg~~i~ivd~~~~~~~~~~~g~~Gel~v~g-~~v~~gY~~~~~~~~~~~~dgw~~TG-lg~~d~d 507 (507)
.+.+.+.+.....+.+ ..++..+ .|+.|++.+.+ +....+|+++++.+.+.|.||||+|| +|++|+|
T Consensus 324 -~~~~~~~~~~~~~~~~-~~~~~~~--~g~~g~~~~~~~~~~~~~~~~~~~~t~~~~~~g~~~TgD~g~~~~d 392 (503)
T d3cw9a1 324 -MAPGFFSEVRIVRIGG-GVDEIVA--NGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPE 392 (503)
T ss_dssp -EBCCTTCCEEEECTTS-CTTCBCC--TTCCEEEEEECCTTSCCCBTTCHHHHHHHEETTEEEEEEEEEECTT
T ss_pred -ccccccccceeeeeec-ccCcccC--CCccccccccccccccccccCChhhhHHHhcCCceecccccccccC
Confidence 4555565655565555 5555444 45899888876 55677899999999999999999999 9999976
|