Citrus Sinensis ID: 010581

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------

MAPPSSSINHISNPCVYGDFVSSYAERKSRFMKWLSKLFKSTGSNRGGGGGSTSGRHHPQFLGEESMVWPAPRRSLDDRSRADREKEELDHAIALSLAEDLKRPNGQRWRSNTDEDYAWALQDSQLNPSFPPYDPSHYYPRSYKVCGGCNCDIGYGNYLGCMGTYFHPNCFRCRSCGYPITEHEFSLSGKDPYHKSCFKELTHPKCEVCHQYIPTNGAGLIEYRCHPFWAQKYCPSHEHDHTSRCCSCERLESWNTRYYSLEDGRSLCLECMESAIMDTGDCQPLYHAIRDYYEGMNMKLDQQIPMLLVERQALNEAIVGEKNGYHHMPETRGLCLSEEQTVTSILRRPRIGGNRLVGMRTQPQKLTRKCEVTAILVLYGLPRLLTGAILAHELMHGWLRLKGYRNLNPEVEEGICQVLSYMWLESEVLPDYRNMPSTSSASTSSSSSKKGGKSEVEKKLGEFFMHQIAHDASPAYGEGFRIANAAVNKYGLRRTLEHIRLTGNFPL

ccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccEEEcccccccHHHHHHHcccccccccccccccccccEEEEEccccccccccccccccccccccccccccccccEEEccccEEEcHHHHHHHHccccccccHHHHHHHHHHcccccccccccEEEccHHHHHHHHHcccccccccccccccEEEcEEEEEEEEEccccccccEEEEEEccccccccEEEEEEEEEcccccHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcHHHHHHHHHHHccccc

cccccccccccccccEEccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccEEEEcccccccccEEEcccccccccccEEccccccccHHHHHHHcccccHHccccccccHHHHHHccccccHHEEccccccccccccccccHHccccccEEEEcccccEEEHHHccccccccHcHHHHHHHHHHHHHHccccccccccEEEEcHHHHHHHHHHHccccccccccccEEEcccEEEEEEEccccccccEEEEEcccccccccccEEEEEEEEccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccHHHHHHHHHHcccccc

mappsssinhisnpcvygdfvSSYAERKSRFMKWLSKLFKstgsnrgggggstsgrhhpqflgeesmvwpaprrslddrsraDREKEELDHAIALSLAEdlkrpngqrwrsntDEDYAWAlqdsqlnpsfppydpshyyprsykvcggcncdigygnylgcmgtyfhpncfrcrscgypitehefslsgkdpyhkscfkelthpkcevchqyiptngaglieyrchpfwaqkycpshehdhtsrccscerleswntryysledgRSLCLECMEsaimdtgdcqplYHAIRDYYEGmnmkldqqIPMLLVERQALNEAIvgekngyhhmpetrglclseEQTVTSIlrrpriggnrlvgmrtqpqkltrKCEVTAILVLYGLPRLLTGAILAHELMHGWLRlkgyrnlnpeVEEGICQVLSYMWLesevlpdyrnmpstssastssssskkggkSEVEKKLGEFFMHqiahdaspaygeGFRIANAAVNKYGLRRTLEHIRLTGNFPL

mappsssinhisnpcvyGDFVSSYAERKSRFMKWLSKLFKStgsnrgggggstsgrhHPQFlgeesmvwpaprrsLDDRSRADREKEELDHAIAlslaedlkrpngqRWRSNTDEDYAWALQDSQLNPSFPPYDPSHYYPRSYKVCGGCNCDIGYGNYLGCMGTYFHPNCFRCRSCGYPITEHEFSLSGKDPYHKSCFKELTHPKCEVCHQYIPTNGAGLIEYRCHPFWAQKYCPSHEHDHTSRCCSCERLESWNTRYYSLEDGRSLCLECMESAimdtgdcqPLYHAIRDYYEGMNMKLDQQIPMLLVERQALNEAIVGEKNGYHHMPETRGLCLSEEQTVTSilrrpriggnrlvgmrtqpqkltrkCEVTAILVLYGLPRLLTGAILAHELMHGWLRLKGYRNLNPEVEEGICQVLSYMWLESEVLPDYRNMPStssastssssskkggKSEVEKKLGEFFMHQIAHDASPAYGEGFRIANAAVNKYGLRRTlehirltgnfpl

MAppsssinhisnpCVYGDFVSSYAERKSRFMKWLSKLFKstgsnrgggggstsgrHHPQFLGEESMVWpaprrslddrsradrEKEELDHAIALSLAEDLKRPNGQRWRSNTDEDYAWALQDSQLNPSFPPYDPSHYYPRSYKVCGGCNCDIGYGNYLGCMGTYFHPNCFRCRSCGYPITEHEFSLSGKDPYHKSCFKELTHPKCEVCHQYIPTNGAGLIEYRCHPFWAQKYCPSHEHDHTSRCCSCERLESWNTRYYSLEDGRSLCLECMESAIMDTGDCQPLYHAIRDYYEGMNMKLDQQIPMLLVERQALNEAIVGEKNGYHHMPETRGLCLSEEQTVTSILRRPRIGGNRLVGMRTQPQKLTRKCEVTAILVLYGLPRLLTGAILAHELMHGWLRLKGYRNLNPEVEEGICQVLSYMWLESEVLPDYRNMPstssastssssskkggksEVEKKLGEFFMHQIAHDASPAYGEGFRIANAAVNKYGLRRTLEHIRLTGNFPL

**********ISNPCVYGDFVSSYAERKSRFMKWLSKLF*****************************************************************************YAWALQ*******FPPYDPSHYYPRSYKVCGGCNCDIGYGNYLGCMGTYFHPNCFRCRSCGYPITEHEFSLSGKDPYHKSCFKELTHPKCEVCHQYIPTNGAGLIEYRCHPFWAQKYCPSHEHDHTSRCCSCERLESWNTRYYSLEDGRSLCLECMESAIMDTGDCQPLYHAIRDYYEGMNMKLDQQIPMLLVERQALNEAIVGEKNGYHHMPETRGLCLSEEQTVTSILRRPRIGGNRLVGMRTQPQKLTRKCEVTAILVLYGLPRLLTGAILAHELMHGWLRLKGYRNLNPEVEEGICQVLSYMWLESEVLP******************************GEFFMHQIAHDASPAYGEGFRIANAAVNKYGLRRTLEHIRLT*****

************NP**************SRFMKWLS********************************************************************************************************RSYKVCGGCNCDIGYGNYLGCMGTYFHPNCFRCRSCGYPITEHEFSLSGKDPYHKSCFKELTHPKCEVCHQYIPTNGAGLIEYRCHPFWAQKYCPSHEHDHTSRCCSCERLESWNTRYYSLEDGRSLCLECMESAIMDTGDCQPLYHAIRDYYEGM***********L********************PETRGLCLSEEQTV***************************CEVTAILVLYGLPRLLTGAILAHELMHGWLRLKGYRNLNPEVEEGICQVLSYMWLES*********************************LGEFFMHQIAHDASPAYGEGFRIANAAVNKYGLRRTLEHIRLTGNFP*

********NHISNPCVYGDFVSSYAERKSRFMKWLSKLFKSTG***********GRHHPQFLGEESMVWPA*****************LDHAIALSLAEDLKRPNGQRWRSNTDEDYAWALQDSQLNPSFPPYDPSHYYPRSYKVCGGCNCDIGYGNYLGCMGTYFHPNCFRCRSCGYPITEHEFSLSGKDPYHKSCFKELTHPKCEVCHQYIPTNGAGLIEYRCHPFWAQKYCP**********CSCERLESWNTRYYSLEDGRSLCLECMESAIMDTGDCQPLYHAIRDYYEGMNMKLDQQIPMLLVERQALNEAIVGEKNGYHHMPETRGLCLSEEQTVTSILRRPRIGGNRLVGMRTQPQKLTRKCEVTAILVLYGLPRLLTGAILAHELMHGWLRLKGYRNLNPEVEEGICQVLSYMWLESEVLPDYRN*********************VEKKLGEFFMHQIAHDASPAYGEGFRIANAAVNKYGLRRTLEHIRLTGNFPL

*******INHISNPCVYGDFVSSYAERKSRFMKWLSKLFKS*********************************************EELDHAIALSLAEDLK***********DEDYAWALQDSQLNPSFPPYDPSHYYPRSYKVCGGCNCDIGYGNYLGCMGTYFHPNCFRCRSCGYPITEHEFSLSGKDPYHKSCFKELTHPKCEVCHQYIPTNGAGLIEYRCHPFWAQKYCPSHEHDHTSRCCSCERLESWNTRYYSLEDGRSLCLECMESAIMDTGDCQPLYHAIRDYYEGMNMKLDQQIPMLLVERQALNEAIVGEKNGYHHMPETRGLCLSEEQTVTSILRRPRIGGNRLVGMRTQPQKLTRKCEVTAILVLYGLPRLLTGAILAHELMHGWLRLKGYRNLNPEVEEGICQVLSYMWLESEVLP***********************SEVEKKLGEFFMHQIAHDASPAYGEGFRIANAAVNKYGLRRTLEHIRLTGNFPL

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		507	2.2.26 [Sep-21-2011]
Q0WSN2		528	Protein DA1-related 2 OS=	yes	no	0.984	0.945	0.734	0.0
Q8W4F0		553	Protein DA1-related 1 OS=	no	no	0.798	0.732	0.626	1e-148
P0C7Q8		532	Protein DA1 OS=Arabidopsi	no	no	0.848	0.808	0.536	1e-143
Q9FJX9		560	Protein DA1-related 7 OS=	no	no	0.715	0.648	0.493	3e-97
Q9FJX8		644	Protein DA1-related 6 OS=	no	no	0.875	0.689	0.414	5e-97
Q9FKN7		1613	Protein DA1-related 4 OS=	no	no	0.694	0.218	0.486	3e-88
Q84WJ0		702	Protein DA1-related 5 OS=	no	no	0.698	0.504	0.445	4e-85
Q9LVR6		450	Protein DA1-related 3 OS=	no	no	0.668	0.753	0.460	3e-81
Q8K4G5		861	Actin-binding LIM protein	yes	no	0.132	0.077	0.397	1e-05
O14639		778	Actin-binding LIM protein	yes	no	0.132	0.086	0.397	1e-05

>sp\|Q0WSN2\|DAR2_ARATH Protein DA1-related 2 OS=Arabidopsis thaliana GN=DAR2 PE=2 SV=1	Back alignment and function desciption

 Score =  755 bits (1950), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/513 (73%), Positives = 429/513 (83%), Gaps = 14/513 (2%)

Query: 6   SSINHISNPCVYGDFVSS----YAERKSRFMKWLSKLFKSTGSNRGGGGGSTSGRHHPQF 61
           + ++HISNPC++G+  SS    Y ++K + MKW+SKLFKS  +  G G  + +  H PQF
Sbjct: 19  ARVSHISNPCIFGEVGSSSSSTYRDKKWKLMKWVSKLFKSGSNGGGSG--AHTNHHPPQF 76

Query: 62  LGEESMVWPAPRRSLDDRSRADREKEELDHAIALSLAEDLKRPNGQRWRSNTDEDYAWAL 121
             +E+MV+P P  SLDDRSR  R+KEELD +I+LSLA++ KRP+G  W  + + D+    
Sbjct: 77  QEDENMVFPLPPSSLDDRSRGARDKEELDRSISLSLADNTKRPHGYGWSMDNNRDFPRPF 136

Query: 122 QDSQLNPS--FPPYDPSHYYPRSYKVCGGCNCDIGYGNYLGCMGTYFHPNCFRCRSCGYP 179
               LNPS   PPY+PS+ Y R  ++CGGCN DIG GNYLGCMGT+FHP CFRC SCGY 
Sbjct: 137 HGG-LNPSSFIPPYEPSYQYRRRQRICGGCNSDIGSGNYLGCMGTFFHPECFRCHSCGYA 195

Query: 180 ITEHEFSLSGKDPYHKSCFKELTHPKCEVCHQYIPTNGAGLIEYRCHPFWAQKYCPSHEH 239
           ITEHEFSLSG  PYHK CFKELTHPKCEVCH +IPTN AGLIEYRCHPFW QKYCPSHE+
Sbjct: 196 ITEHEFSLSGTKPYHKLCFKELTHPKCEVCHHFIPTNDAGLIEYRCHPFWNQKYCPSHEY 255

Query: 240 DHTSRCCSCERLESWNTRYYSLEDGRSLCLECMESAIMDTGDCQPLYHAIRDYYEGMNMK 299
           D T+RCCSCERLESW+ RYY+LEDGRSLCLECME+AI DTG+CQPLYHAIRDYYEGM MK
Sbjct: 256 DKTARCCSCERLESWDVRYYTLEDGRSLCLECMETAITDTGECQPLYHAIRDYYEGMYMK 315

Query: 300 LDQQIPMLLVERQALNEAIVGEKNGYHHMPETRGLCLSEEQTVTSILRRPRIGGNRLVGM 359
           LDQQIPMLLV+R+ALN+AIVGEKNGYHHMPETRGLCLSEEQTVTS+LRRPR+G +RLVGM
Sbjct: 316 LDQQIPMLLVQREALNDAIVGEKNGYHHMPETRGLCLSEEQTVTSVLRRPRLGAHRLVGM 375

Query: 360 RTQPQKLTRKCEVTAILVLYGLPRLLTGAILAHELMHGWLRLKGYRNLNPEVEEGICQVL 419
           RTQPQ+LTRKCEVTAILVLYGLPRLLTGAILAHELMHGWLRL G+RNLNPEVEEGICQVL
Sbjct: 376 RTQPQRLTRKCEVTAILVLYGLPRLLTGAILAHELMHGWLRLNGFRNLNPEVEEGICQVL 435

Query: 420 SYMWLESEVL--PDYRNMP---STSSASTSSSSSKKGGKSEVEKKLGEFFMHQIAHDASP 474
           SYMWLESEVL  P  RN+P   S +++S+SS S+KKGGKS VEKKLGEFF HQIAHDASP
Sbjct: 436 SYMWLESEVLSDPSTRNLPSTSSVATSSSSSFSNKKGGKSNVEKKLGEFFKHQIAHDASP 495

Query: 475 AYGEGFRIANAAVNKYGLRRTLEHIRLTGNFPL 507
           AYG GFR ANAA  KYGLRRTL+HIRLTG FPL
Sbjct: 496 AYGGGFRAANAAACKYGLRRTLDHIRLTGTFPL 528

Ubiquitin receptor that probably regulates developmental process.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q8W4F0\|DAR1_ARATH Protein DA1-related 1 OS=Arabidopsis thaliana GN=DAR1 PE=2 SV=3	Back alignment and function description

>sp\|P0C7Q8\|DA1_ARATH Protein DA1 OS=Arabidopsis thaliana GN=DA1 PE=1 SV=1	Back alignment and function description

>sp\|Q9FJX9\|DAR7_ARATH Protein DA1-related 7 OS=Arabidopsis thaliana GN=DAR7 PE=2 SV=2	Back alignment and function description

>sp\|Q9FJX8\|DAR6_ARATH Protein DA1-related 6 OS=Arabidopsis thaliana GN=DAR6 PE=2 SV=1	Back alignment and function description

>sp\|Q9FKN7\|DAR4_ARATH Protein DA1-related 4 OS=Arabidopsis thaliana GN=DAR4 PE=1 SV=2	Back alignment and function description

>sp\|Q84WJ0\|DAR5_ARATH Protein DA1-related 5 OS=Arabidopsis thaliana GN=DAR5 PE=2 SV=2	Back alignment and function description

>sp\|Q9LVR6\|DAR3_ARATH Protein DA1-related 3 OS=Arabidopsis thaliana GN=DAR3 PE=2 SV=2	Back alignment and function description

>sp\|Q8K4G5\|ABLM1_MOUSE Actin-binding LIM protein 1 OS=Mus musculus GN=Ablim1 PE=1 SV=1	Back alignment and function description

>sp\|O14639\|ABLM1_HUMAN Actin-binding LIM protein 1 OS=Homo sapiens GN=ABLIM1 PE=1 SV=3	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		507
255566514		498	zinc ion binding protein, putative [Rici	0.964	0.981	0.819	0.0
225449360		505	PREDICTED: protein DA1-related 2 [Vitis	0.982	0.986	0.803	0.0
145360806		528	DA1-related protein 2 [Arabidopsis thali	0.984	0.945	0.734	0.0
297827597		525	zinc ion binding protein [Arabidopsis ly	0.976	0.942	0.746	0.0
449464476		515	PREDICTED: protein DA1-related 2-like [C	0.978	0.963	0.741	0.0
357492437		504	LIM and UIM domain-containing [Medicago	0.986	0.992	0.739	0.0
449513199		515	PREDICTED: LOW QUALITY PROTEIN: protein	0.978	0.963	0.739	0.0
356553815		492	PREDICTED: protein DA1-related 2-like [G	0.964	0.993	0.730	0.0
356499135		516	PREDICTED: protein DA1-related 2-like [G	0.962	0.945	0.729	0.0
388511579		504	unknown [Medicago truncatula]	0.986	0.992	0.731	0.0

>gi\|255566514\|ref\|XP_002524242.1\| zinc ion binding protein, putative [Ricinus communis] gi\|223536519\|gb\|EEF38166.1\| zinc ion binding protein, putative [Ricinus communis]	Back alignment and taxonomy information

 Score =  789 bits (2037), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/516 (81%), Positives = 452/516 (87%), Gaps = 27/516 (5%)

Query: 1   MAPPSS------SINHISNPCVYGDFVSSYAERKSRFMKWLSKLFKSTGSNRGGGGGSTS 54
           MAPPSS       +NHISNPC+Y        ERKSRFMKWLSKLFK  G  RGGG     
Sbjct: 1   MAPPSSSSSSSSGVNHISNPCIY--------ERKSRFMKWLSKLFKG-GPTRGGGS---- 47

Query: 55  GRHHPQFLGEESMV-WPAPRRSLDDRSRADREKEELDHAIALSLAEDLKRPNGQRWRSNT 113
              HPQ LGEE+MV W AP RSLD+ +R  +EKEE DHA+ALSLAED KRP G RWR++ 
Sbjct: 48  --RHPQLLGEENMVSWRAPARSLDEHTRPGKEKEESDHAMALSLAEDWKRP-GYRWRTDN 104

Query: 114 DEDYAWALQDSQLNPS-FPPYDPSHYYPRSYKVCGGCNCDIGYGNYLGCMGTYFHPNCFR 172
           DE+ A ALQDS LNPS +PPY P  YY R Y++CGGC+ DIGYGNYLGCMG +FHP+CFR
Sbjct: 105 DEELARALQDS-LNPSGYPPYAPPQYYQRGYRLCGGCHGDIGYGNYLGCMGKFFHPDCFR 163

Query: 173 CRSCGYPITEHEFSLSGKDPYHKSCFKELTHPKCEVCHQYIPTNGAGLIEYRCHPFWAQK 232
           C SCGYPITE+EFSLSG+DPYHK+CFKELTHPKCEVCHQYIPTN AGLIEYRCHPFW+QK
Sbjct: 164 CSSCGYPITENEFSLSGRDPYHKTCFKELTHPKCEVCHQYIPTNDAGLIEYRCHPFWSQK 223

Query: 233 YCPSHEHDHTSRCCSCERLESWNTRYYSLEDGRSLCLECMESAIMDTGDCQPLYHAIRDY 292
           YCPSHEHD T+RCCSCERLESWNTRYYSL DGRSLCLECMESAIMDTGDCQPLYH+IRDY
Sbjct: 224 YCPSHEHDSTARCCSCERLESWNTRYYSLGDGRSLCLECMESAIMDTGDCQPLYHSIRDY 283

Query: 293 YEGMNMKLDQQIPMLLVERQALNEAIVGEKNGYHHMPETRGLCLSEEQTVTSILRRPRIG 352
           YEGMNMKLDQQIPMLLVERQALNEAIVGEKNGYHHMPETRGLCLSEEQTVTSI RRPRIG
Sbjct: 284 YEGMNMKLDQQIPMLLVERQALNEAIVGEKNGYHHMPETRGLCLSEEQTVTSIQRRPRIG 343

Query: 353 GNRLVGMRTQPQKLTRK-CEVTAILVLYGLPRLLTGAILAHELMHGWLRLKGYRNLNPEV 411
           GNRLVG+RTQPQKLTRK CEVTAILVLYGLPRLLTGAILAHELMHGWLRLKGYRNLNPEV
Sbjct: 344 GNRLVGIRTQPQKLTRKSCEVTAILVLYGLPRLLTGAILAHELMHGWLRLKGYRNLNPEV 403

Query: 412 EEGICQVLSYMWLESEVLPDYRNMPSTSSASTSSSSSKKGGKSEVEKKLGEFFMHQIAHD 471
           EEGICQVLSYMWLESEVLP  + MPSTS+AS+SSSSSKKGGKS  E KLGEFFMHQIA+D
Sbjct: 404 EEGICQVLSYMWLESEVLPS-KGMPSTSAASSSSSSSKKGGKSNAENKLGEFFMHQIAND 462

Query: 472 ASPAYGEGFRIANAAVNKYGLRRTLEHIRLTGNFPL 507
           ASPAYG GFR ANAAVNKYGLRRTL+HIRLTG+FPL
Sbjct: 463 ASPAYGGGFRAANAAVNKYGLRRTLDHIRLTGHFPL 498

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|225449360\|ref\|XP_002277622.1\| PREDICTED: protein DA1-related 2 [Vitis vinifera] gi\|296086166\|emb\|CBI31607.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|145360806\|ref\|NP_181513.3\| DA1-related protein 2 [Arabidopsis thaliana] gi\|122236286\|sp\|Q0WSN2.1\|DAR2_ARATH RecName: Full=Protein DA1-related 2 gi\|110735778\|dbj\|BAE99866.1\| hypothetical protein [Arabidopsis thaliana] gi\|330254642\|gb\|AEC09736.1\| DA1-related protein 2 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297827597\|ref\|XP_002881681.1\| zinc ion binding protein [Arabidopsis lyrata subsp. lyrata] gi\|297327520\|gb\|EFH57940.1\| zinc ion binding protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|449464476\|ref\|XP_004149955.1\| PREDICTED: protein DA1-related 2-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|357492437\|ref\|XP_003616507.1\| LIM and UIM domain-containing [Medicago truncatula] gi\|355517842\|gb\|AES99465.1\| LIM and UIM domain-containing [Medicago truncatula]	Back alignment and taxonomy information

>gi\|449513199\|ref\|XP_004164259.1\| PREDICTED: LOW QUALITY PROTEIN: protein DA1-related 2-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356553815\|ref\|XP_003545247.1\| PREDICTED: protein DA1-related 2-like [Glycine max]	Back alignment and taxonomy information

>gi\|356499135\|ref\|XP_003518398.1\| PREDICTED: protein DA1-related 2-like [Glycine max]	Back alignment and taxonomy information

>gi\|388511579\|gb\|AFK43851.1\| unknown [Medicago truncatula]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		507
TAIR\|locus:2063932		528	DAR2 "DA1-related protein 2" [	0.966	0.928	0.690	3.1e-193
TAIR\|locus:2115290		553	AT4G36860 [Arabidopsis thalian	0.796	0.730	0.606	6.2e-142
TAIR\|locus:2202175		532	DA1 "DA1" [Arabidopsis thalian	0.822	0.783	0.542	1.9e-131
TAIR\|locus:2154880		644	DAR6 "DA1-related protein 6" [	0.680	0.535	0.469	2.6e-86
TAIR\|locus:2170338		1613	DAR4 "DA1-related protein 4" [	0.800	0.251	0.441	4.1e-84
TAIR\|locus:2154890		702	DAR5 "DA1-related protein 5" [	0.698	0.504	0.421	3e-78
DICTYBASE\|DDB_G0291251		700	limD "LIM-type zinc finger-con	0.232	0.168	0.280	7.4e-08
UNIPROTKB\|D4A6Z5		261	D4A6Z5 "Uncharacterized protei	0.132	0.256	0.397	9.9e-07
UNIPROTKB\|F6QGM2		214	LHX3 "LIM/homeobox protein Lhx	0.246	0.584	0.294	3.7e-06
MGI\|MGI:102784		461	Tgfb1i1 "transforming growth f	0.187	0.206	0.333	3.7e-06

TAIR\|locus:2063932 DAR2 "DA1-related protein 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1872 (664.0 bits), Expect = 3.1e-193, P = 3.1e-193
 Identities = 348/504 (69%), Positives = 389/504 (77%)

Query:    15 CVYGDFVSS----YAERKSRFMKWLSKLFKXXXXXXXXXXXXXXXXHHPQFLGEESMVWX 70
             C++G+  SS    Y ++K + MKW+SKLFK                H PQF  +E+MV+ 
Sbjct:    28 CIFGEVGSSSSSTYRDKKWKLMKWVSKLFKSGSNGGGSGAHTNH--HPPQFQEDENMVFP 85

Query:    71 XXXXXXXXXXXXXXEKEELDHAIALSLAEDLKRPNGQRWRSNTDEDYAWALQDSQLNPS- 129
                           +KEELD +I+LSLA++ KRP+G  W  + + D+        LNPS 
Sbjct:    86 LPPSSLDDRSRGARDKEELDRSISLSLADNTKRPHGYGWSMDNNRDFPRPFHGG-LNPSS 144

Query:   130 -FPPYDPSHYYPRSYKVCGGCNCDIGYGNYLGCMGTYFHPNCFRCRSCGYPITEHEFSLS 188
               PPY+PS+ Y R  ++CGGCN DIG GNYLGCMGT+FHP CFRC SCGY ITEHEFSLS
Sbjct:   145 FIPPYEPSYQYRRRQRICGGCNSDIGSGNYLGCMGTFFHPECFRCHSCGYAITEHEFSLS 204

Query:   189 GKDPYHKSCFKELTHPKCEVCHQYIPTNGAGLIEYRCHPFWAQKYCPSHEHDHTSRCCSC 248
             G  PYHK CFKELTHPKCEVCH +IPTN AGLIEYRCHPFW QKYCPSHE+D T+RCCSC
Sbjct:   205 GTKPYHKLCFKELTHPKCEVCHHFIPTNDAGLIEYRCHPFWNQKYCPSHEYDKTARCCSC 264

Query:   249 ERLESWNTRYYSLEDGRSLCLECMESAIMDTGDCQPLYHAIRDYYEGMNMKLDQQIPMLL 308
             ERLESW+ RYY+LEDGRSLCLECME+AI DTG+CQPLYHAIRDYYEGM MKLDQQIPMLL
Sbjct:   265 ERLESWDVRYYTLEDGRSLCLECMETAITDTGECQPLYHAIRDYYEGMYMKLDQQIPMLL 324

Query:   309 VERQALNEAIVGEKNGYHHMPETRGLCLSEEQTVTSILRRPRIGGNRLVGMRTQPQKLTR 368
             V+R+ALN+AIVGEKNGYHHMPETRGLCLSEEQTVTS+LRRPR+G +RLVGMRTQPQ+LTR
Sbjct:   325 VQREALNDAIVGEKNGYHHMPETRGLCLSEEQTVTSVLRRPRLGAHRLVGMRTQPQRLTR 384

Query:   369 KCEVTAILVLYGLPRLLTGAILAHELMHGWLRLKGYRNLNPEVEEGICQVLSYMWLESEV 428
             KCEVTAILVLYGLPRLLTGAILAHELMHGWLRL G+RNLNPEVEEGICQVLSYMWLESEV
Sbjct:   385 KCEVTAILVLYGLPRLLTGAILAHELMHGWLRLNGFRNLNPEVEEGICQVLSYMWLESEV 444

Query:   429 L--PDYRNMPXXXXXXXXXXXXXXXXX---XEVEKKLGEFFMHQIAHDASPAYGEGFRIA 483
             L  P  RN+P                      VEKKLGEFF HQIAHDASPAYG GFR A
Sbjct:   445 LSDPSTRNLPSTSSVATSSSSSFSNKKGGKSNVEKKLGEFFKHQIAHDASPAYGGGFRAA 504

Query:   484 NAAVNKYGLRRTLEHIRLTGNFPL 507
             NAA  KYGLRRTL+HIRLTG FPL
Sbjct:   505 NAAACKYGLRRTLDHIRLTGTFPL 528

GO:0008270 "zinc ion binding" evidence=IEA

GO:0010088 "phloem development" evidence=IMP

GO:0048364 "root development" evidence=IMP

TAIR\|locus:2115290 AT4G36860 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2202175 DA1 "DA1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2154880 DAR6 "DA1-related protein 6" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2170338 DAR4 "DA1-related protein 4" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2154890 DAR5 "DA1-related protein 5" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0291251 limD "LIM-type zinc finger-containing protein" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

UNIPROTKB\|D4A6Z5 D4A6Z5 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|F6QGM2 LHX3 "LIM/homeobox protein Lhx3" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

MGI\|MGI:102784 Tgfb1i1 "transforming growth factor beta 1 induced transcript 1" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0WSN2	DAR2_ARATH	No assigned EC number	0.7348	0.9842	0.9450	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	DAR2	DAR2 (DA1-RELATED PROTEIN 2); zinc ion binding; DA1-RELATED PROTEIN 2 (DAR2); FUNCTIONS IN- zinc ion binding; LOCATED IN- chloroplast; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Zinc finger, LIM-type (InterPro-IPR001781); BEST Arabidopsis thaliana protein match is- zinc ion binding (TAIR-AT4G36860.1); Has 1260 Blast hits to 1022 proteins in 84 species- Archae - 0; Bacteria - 8; Metazoa - 1006; Fungi - 20; Plants - 88; Viruses - 0; Other Eukaryotes - 138 (source- NCBI BLink). (528 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	AT2G42370	unknown protein; unknown protein; LOCATED IN- cellular_component unknown; EXPRESSED IN- 11 plan [...] (715 aa)	•	0.921
	AT2G42330	D111/G-patch domain-containing protein; D111/G-patch domain-containing protein; FUNCTIONS IN- n [...] (752 aa)	•	0.921
	AT2G41350	unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biolog [...] (299 aa)	•	0.921
	AT2G41150	unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biolog [...] (404 aa)	•	0.921
	AT2G41050	PQ-loop repeat family protein / transmembrane family protein; PQ-loop repeat family protein / t [...] (376 aa)	•	0.921
	AT2G40520	nucleotidyltransferase family protein; nucleotidyltransferase family protein; FUNCTIONS IN- nuc [...] (502 aa)	•	0.921
	AT2G39790	mitochondrial glycoprotein family protein / MAM33 family protein; mitochondrial glycoprotein fa [...] (240 aa)	•	0.921
	AT2G39920	acid phosphatase class B family protein; acid phosphatase class B family protein; FUNCTIONS IN- [...] (283 aa)	•	0.871
	AT2G40390	unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biolog [...] (496 aa)	•	0.659
	AT2G23940	unknown protein; unknown protein; LOCATED IN- plasma membrane; EXPRESSED IN- 22 plant structure [...] (173 aa)	•	0.659

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		507
pfam12315		212	pfam12315, DUF3633, Protein of unknown function (D	1e-134
cd09396		53	cd09396, LIM_DA1, The Lim domain of DA1	5e-25
cd08368		53	cd08368, LIM, LIM is a small protein-protein inter	2e-07
pfam00412		58	pfam00412, LIM, LIM domain	4e-06
cd09391		57	cd09391, LIM1_Lrg1p_like, The first LIM domain of	1e-05
cd09338		53	cd09338, LIM3_Paxillin_like, The third LIM domain	5e-05
smart00132		54	smart00132, LIM, Zinc-binding domain present in Li	7e-05
cd09329		52	cd09329, LIM3_abLIM, The third LIM domain of actin	0.001
cd09409		53	cd09409, LIM3_Paxillin, The third LIM domain of pa	0.002
cd09479		56	cd09479, LIM1_CRP1, The first LIM domain of Cystei	0.002
cd09400		61	cd09400, LIM_like_1, LIM domain in proteins of unk	0.002
cd09410		53	cd09410, LIM3_Leupaxin, The third LIM domain of Le	0.003
cd09412		52	cd09412, LIM4_Leupaxin, The fourth LIM domain of L	0.003
cd09395		53	cd09395, LIM2_Rga, The second LIM domain of Rga GT	0.003
cd09345		54	cd09345, LIM2_FHL, The second LIM domain of Four a	0.004

>gnl\|CDD\|204878 pfam12315, DUF3633, Protein of unknown function (DUF3633)	Back alignment and domain information

 Score =  386 bits (994), Expect = e-134
 Identities = 161/212 (75%), Positives = 183/212 (86%), Gaps = 3/212 (1%)

Query: 295 GMNMKLDQQIPMLLVERQALNEAIVGEKNGYHHMPETRGLCLSEEQTVTSILRRPRIG-G 353
           G+NMK++Q+IPMLLVERQALN+A  GEK G+HH PETRGLCLSEEQ VTS+L+RPRIG G
Sbjct: 1   GLNMKIEQEIPMLLVERQALNKAREGEKIGHHHTPETRGLCLSEEQIVTSVLKRPRIGPG 60

Query: 354 NRLVGMRTQPQKLTRKCEVTAILVLYGLPRLLTGAILAHELMHGWLRLKGYRNLNPEVEE 413
           NRL+GM T+PQKLTR+CEVTAILVLYGLPRLLTG+ILAHE+MH WLRL GYRNLNPEVEE
Sbjct: 61  NRLIGMGTEPQKLTRRCEVTAILVLYGLPRLLTGSILAHEMMHAWLRLNGYRNLNPEVEE 120

Query: 414 GICQVLSYMWLESEVLPDYRNMPSTSSASTSS--SSSKKGGKSEVEKKLGEFFMHQIAHD 471
           GICQVL +MWLESE         S+SS+S+S   SSSKKG KS+ EKKLGEFF HQI  D
Sbjct: 121 GICQVLGHMWLESETYASSSASSSSSSSSSSPAASSSKKGEKSDFEKKLGEFFKHQIETD 180

Query: 472 ASPAYGEGFRIANAAVNKYGLRRTLEHIRLTG 503
           +SP YG+GFR ANAAV+KYGLRRTL+HIRLTG
Sbjct: 181 SSPVYGDGFRAANAAVSKYGLRRTLDHIRLTG 212

This domain family is found in bacteria and eukaryotes, and is approximately 210 amino acids in length. The family is found in association with pfam00412. Length = 212

>gnl\|CDD\|188782 cd09396, LIM_DA1, The Lim domain of DA1	Back alignment and domain information

>gnl\|CDD\|188711 cd08368, LIM, LIM is a small protein-protein interaction domain, containing two zinc fingers	Back alignment and domain information

>gnl\|CDD\|215907 pfam00412, LIM, LIM domain	Back alignment and domain information

>gnl\|CDD\|188777 cd09391, LIM1_Lrg1p_like, The first LIM domain of Lrg1p, a LIM and RhoGap domain containing protein	Back alignment and domain information

>gnl\|CDD\|188724 cd09338, LIM3_Paxillin_like, The third LIM domain of the paxillin like protein family	Back alignment and domain information

>gnl\|CDD\|214528 smart00132, LIM, Zinc-binding domain present in Lin-11, Isl-1, Mec-3	Back alignment and domain information

>gnl\|CDD\|188715 cd09329, LIM3_abLIM, The third LIM domain of actin binding LIM (abLIM) proteins	Back alignment and domain information

>gnl\|CDD\|188793 cd09409, LIM3_Paxillin, The third LIM domain of paxillin	Back alignment and domain information

>gnl\|CDD\|188863 cd09479, LIM1_CRP1, The first LIM domain of Cysteine Rich Protein 1 (CRP1)	Back alignment and domain information

>gnl\|CDD\|188784 cd09400, LIM_like_1, LIM domain in proteins of unknown function	Back alignment and domain information

>gnl\|CDD\|188794 cd09410, LIM3_Leupaxin, The third LIM domain of Leupaxin	Back alignment and domain information

>gnl\|CDD\|188796 cd09412, LIM4_Leupaxin, The fourth LIM domain of Leupaxin	Back alignment and domain information

>gnl\|CDD\|188781 cd09395, LIM2_Rga, The second LIM domain of Rga GTPase-Activating Proteins	Back alignment and domain information

>gnl\|CDD\|188731 cd09345, LIM2_FHL, The second LIM domain of Four and a half LIM domains protein (FHL)	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		507
PF12315		212	DUF3633: Protein of unknown function (DUF3633); In	100.0
KOG1703		479	consensus Adaptor protein Enigma and related PDZ-L	99.95
KOG1701		468	consensus Focal adhesion adaptor protein Paxillin	99.86
KOG4577		383	consensus Transcription factor LIM3, contains LIM	99.76
KOG2272		332	consensus Focal adhesion protein PINCH-1, contains	99.7
KOG2272		332	consensus Focal adhesion protein PINCH-1, contains	99.7
KOG1703		479	consensus Adaptor protein Enigma and related PDZ-L	99.67
KOG1701		468	consensus Focal adhesion adaptor protein Paxillin	99.65
KOG1044		670	consensus Actin-binding LIM Zn-finger protein Lima	99.55
PF00412		58	LIM: LIM domain; InterPro: IPR001781 Zinc finger (	99.25
KOG1044		670	consensus Actin-binding LIM Zn-finger protein Lima	99.0
KOG4577		383	consensus Transcription factor LIM3, contains LIM	98.7
KOG1700		200	consensus Regulatory protein MLP and related LIM p	98.58
smart00132		39	LIM Zinc-binding domain present in Lin-11, Isl-1,	98.24
PF00412		58	LIM: LIM domain; InterPro: IPR001781 Zinc finger (	98.22
PF13485		128	Peptidase_MA_2: Peptidase MA superfamily	97.39
KOG1702		264	consensus Nebulin repeat protein [Cytoskeleton]	96.88
KOG0490		235	consensus Transcription factor, contains HOX domai	96.81
KOG1700		200	consensus Regulatory protein MLP and related LIM p	96.68
smart00132		39	LIM Zinc-binding domain present in Lin-11, Isl-1,	96.36
PF10026		195	DUF2268: Predicted Zn-dependent protease (DUF2268)	91.54
PF01433		390	Peptidase_M1: Peptidase family M1 This is family M	86.58
PF04450		205	BSP: Peptidase of plants and bacteria; InterPro: I	82.36
PF14891		174	Peptidase_M91: Effector protein	80.95
PF01431		206	Peptidase_M13: Peptidase family M13 This is family	80.9
PF13699		79	DUF4157: Domain of unknown function (DUF4157)	80.86

>PF12315 DUF3633: Protein of unknown function (DUF3633); InterPro: IPR022087 This domain family is found in bacteria and eukaryotes, and is approximately 210 amino acids in length	Back alignment and domain information

Probab=100.00  E-value=1.2e-85  Score=625.63  Aligned_cols=209  Identities=74%  Similarity=1.172  Sum_probs=198.0

Q ss_pred             hcccccccccccccccHHHHHHHHhccccCCCCCCcccceeecccceeeeeeccccC-CCCeeeeeeccccccccceeEE
Q 010581          295 GMNMKLDQQIPMLLVERQALNEAIVGEKNGYHHMPETRGLCLSEEQTVTSILRRPRI-GGNRLVGMRTQPQKLTRKCEVT  373 (507)
Q Consensus       295 glgm~~~~~~pl~lv~~~~ln~a~~~e~~g~~~~~~trglclse~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~r~~~v~  373 (507)
                      +|||||+|+|||+|||++|||+|+++||+|+||+|+||||||||||||+||.|+|++ +++++++|.|+|++++|+|+||
T Consensus         1 ~lnmki~q~~PllLVe~~aLN~a~~~Ek~~~~~~~~tRGLclseeq~v~sv~~~p~~~~~~~~~~~~~e~~~~~~~~eV~   80 (212)
T PF12315_consen    1 GLNMKIEQEIPLLLVERQALNEAEEGEKIGHHHMPETRGLCLSEEQTVTSVLRRPRMGPGNQLIDMSTEPQRLTRGCEVT   80 (212)
T ss_pred             CCCCcccCCCCeEEecHHHHHHHHhhccCCCCCCeeeeeeeeeeeEEEEEEEecCCcCCCCccceeeecceeeccceeEE
Confidence            689999999999999999999999999999999999999999999999999999999 5779999999999999999999


Q ss_pred             EEEEEcCCchhHHHHHHHHHHHHHHHHHhCCCCCChhhhhhHHHHHHHHHhhccccCCCCCCCC--CCCCCCCCCCCCCC
Q 010581          374 AILVLYGLPRLLTGAILAHELMHGWLRLKGYRNLNPEVEEGICQVLSYMWLESEVLPDYRNMPS--TSSASTSSSSSKKG  451 (507)
Q Consensus       374 ~Ilvl~GLPrl~~g~ilAHE~mHawlrl~g~~~l~~~vEEG~Cq~~a~~wl~~~~~~~~~~~~~--~~~~~~~~~~~~~g  451 (507)
                      +|||||||||++||||||||||||||||+||++|+++||||||||||||||++|++++.++..+  ++++++++++||||
T Consensus        81 ~Ilvl~GLPrll~gsiLAHE~mHa~Lrl~g~~~L~~~vEEGiCqvla~~wL~~~~~~~~~~~~~~s~~~s~~~~~~skkg  160 (212)
T PF12315_consen   81 AILVLYGLPRLLTGSILAHELMHAWLRLNGFPNLSPEVEEGICQVLAYLWLESELASGSGSSSSSSSSSSSSASSSSKKG  160 (212)
T ss_pred             EEEEECCCCHHHHhhHHHHHHHHHHhcccCCCCCChHHHHHHHHHHHHHHHhhhhhcccCCcccccCCCCCCcccccccc
Confidence            9999999999999999999999999999999999999999999999999999999987664442  23345566778999


Q ss_pred             CchHHHHHHHHHHHhhhhcCCCCCchhhHHHHHHHHHHhCHHHHHHHHHhhC
Q 010581          452 GKSEVEKKLGEFFMHQIAHDASPAYGEGFRIANAAVNKYGLRRTLEHIRLTG  503 (507)
Q Consensus       452 ~~~~~e~~l~~f~~~qi~~d~s~vYGdGfR~~~~a~~~~gl~~~l~~i~~~g  503 (507)
                      ++++||+||++||+||||+|+|||||||||+|++||++|||++||+|||+||
T Consensus       161 ~~s~~E~kL~~f~~~qIe~D~SpvYGdGFRaa~~av~~~GL~~tLdhir~tg  212 (212)
T PF12315_consen  161 AKSQFEKKLGEFFKHQIETDTSPVYGDGFRAANEAVEKYGLRRTLDHIRRTG  212 (212)
T ss_pred             cccHHHHHHHHHHHHHhccCCCcccchHHHHHHHHHHHhCHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999999999998

The family is found in association with PF00412 from PFAM.

>KOG1703 consensus Adaptor protein Enigma and related PDZ-LIM proteins [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]	Back alignment and domain information

>KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription]	Back alignment and domain information

>KOG2272 consensus Focal adhesion protein PINCH-1, contains LIM domains [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>KOG2272 consensus Focal adhesion protein PINCH-1, contains LIM domains [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>KOG1703 consensus Adaptor protein Enigma and related PDZ-LIM proteins [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]	Back alignment and domain information

>KOG1044 consensus Actin-binding LIM Zn-finger protein Limatin involved in axon guidance [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

>KOG1044 consensus Actin-binding LIM Zn-finger protein Limatin involved in axon guidance [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription]	Back alignment and domain information

>KOG1700 consensus Regulatory protein MLP and related LIM proteins [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3	Back alignment and domain information

>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

>PF13485 Peptidase_MA_2: Peptidase MA superfamily	Back alignment and domain information

>KOG1702 consensus Nebulin repeat protein [Cytoskeleton]	Back alignment and domain information

>KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only]	Back alignment and domain information

>KOG1700 consensus Regulatory protein MLP and related LIM proteins [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3	Back alignment and domain information

>PF10026 DUF2268: Predicted Zn-dependent protease (DUF2268); InterPro: IPR018728 This domain, found in various hypothetical bacterial proteins, as well as predicted zinc dependent proteases, has no known function	Back alignment and domain information

>PF01433 Peptidase_M1: Peptidase family M1 This is family M1 in the peptidase classification	Back alignment and domain information

>PF04450 BSP: Peptidase of plants and bacteria; InterPro: IPR007541 These basic secretory proteins (BSPs) are believed to be part of the plants defence mechanism against pathogens []	Back alignment and domain information

>PF14891 Peptidase_M91: Effector protein	Back alignment and domain information

>PF01431 Peptidase_M13: Peptidase family M13 This is family M13 in the peptidase classification	Back alignment and domain information

>PF13699 DUF4157: Domain of unknown function (DUF4157)	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		507
3mmk_A		169	The Structural Basis For Partial Redundancy In A Cl		6e-05
2jtn_A		182	Nmr Solution Structure Of A Ldb1-Lid:lhx3-Lim Compl		2e-04
2rgt_A		169	Crystal Structure Of Lhx3 Lim Domains 1 And 2 With		4e-04

>pdb|3MMK|A Chain A, The Structural Basis For Partial Redundancy In A Class Of Transcription Factors, The Lim-Homeodomain Proteins, In Neural Cell Type Specification Length = 169

Back alignment and structure

Iteration: 1

Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 52/130 (40%), Gaps = 12/130 (9%) Query: 146 CGGCNCDIGYGNYLGCMGTYFHPNCFRCRSCGYPITEHEFSLSGKDPYHKSCFKELTHPK 205 C GCN I L + ++H +C +C C + + FS +G Y K F + K Sbjct: 9 CAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLADRCFSRAGS-VYCKEDFFKRFGTK 67 Query: 206 CEVCHQYIPTNGAGLIEYRCHPFWAQKYCPSHEHDHTSRCCSCERLESWNTRYYSLEDGR 265 C C Q IP +K H H C C R + +Y +EDGR Sbjct: 68 CTACQQGIPPTQV-----------VRKAQDFVYHLHCFACIICNRQLATGDEFYLMEDGR 116 Query: 266 SLCLECMESA 275 +C E E+A Sbjct: 117 LVCKEDYETA 126

PyMOL of 3mmk

>pdb|2JTN|A Chain A, Nmr Solution Structure Of A Ldb1-Lid:lhx3-Lim Complex Length = 182

Back alignment and structure

>pdb|2RGT|A Chain A, Crystal Structure Of Lhx3 Lim Domains 1 And 2 With The Binding Domain Of Isl1 Length = 169

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		507
1x4l_A		72	Skeletal muscle LIM-protein 3; LIM domain, structu	5e-17
2cur_A		69	Skeletal muscle LIM-protein 1; four and A half LIM	3e-16
2jtn_A		182	LIM domain-binding protein 1, LIM/homeobox protein	3e-16
2xqn_T		126	Testin, TESS; metal-binding protein, cytoskeleton,	4e-15
2xqn_T		126	Testin, TESS; metal-binding protein, cytoskeleton,	3e-04
2dj7_A		80	Actin-binding LIM protein 3; LIM domain, Zn bindin	8e-15
2d8z_A		70	Four and A half LIM domains 2; skeletal muscle LIM	1e-14
1x4k_A		72	Skeletal muscle LIM-protein 3; LIM domain, structu	4e-14
2rgt_A		169	Fusion of LIM/homeobox protein LHX3, linker, INSU	4e-14
2rgt_A		169	Fusion of LIM/homeobox protein LHX3, linker, INSU	7e-08
1wyh_A		72	SLIM 2, skeletal muscle LIM-protein 2; structural	8e-14
1a7i_A		81	QCRP2 (LIM1); LIM domain containing proteins, meta	9e-14
2cuq_A		80	Four and A half LIM domains 3; structural genomics	2e-13
1rut_X		188	Flinc4, fusion protein of LMO4 protein and LIM dom	7e-13
1rut_X		188	Flinc4, fusion protein of LMO4 protein and LIM dom	7e-09
1x3h_A		80	Leupaxin; paxillin family, protein-protein interac	2e-12
1x64_A		89	Alpha-actinin-2 associated LIM protein; LIM domain	2e-12
2ehe_A		82	Four and A half LIM domains 3; FHL-3, skeletal mus	7e-12
2xjy_A		131	Rhombotin-2; oncoprotein, T-cell leukemia, proto-o	8e-12
2egq_A		77	FHL1 protein; LIM domain, four and A half LIM doma	8e-12
2dar_A		90	PDZ and LIM domain protein 5; enigma homolog prote	8e-12
1b8t_A		192	Protein (CRP1); LIM domain, muscle differentiation	1e-11
1b8t_A		192	Protein (CRP1); LIM domain, muscle differentiation	5e-11
1b8t_A		192	Protein (CRP1); LIM domain, muscle differentiation	5e-04
2d8x_A		70	Protein pinch; LIM domain, pinch protein, structur	1e-11
2dlo_A		81	Thyroid receptor-interacting protein 6; LIM domain	3e-11
2cup_A		101	Skeletal muscle LIM-protein 1; four and half LIM d	4e-11
2cup_A		101	Skeletal muscle LIM-protein 1; four and half LIM d	6e-04
1x6a_A		81	LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc fi	5e-11
1x61_A		72	Thyroid receptor interacting protein 6; LIM domain	7e-11
1x63_A		82	Skeletal muscle LIM-protein 1; LIM domain, four an	8e-11
2d8y_A		91	Eplin protein; LIM domain, epithelial protein LOST	2e-10
1x68_A		76	FHL5 protein; four-and-A-half LIM protein 5, zinc	3e-10
1m3v_A		122	FLIN4, fusion of the LIM interacting domain of LDB	6e-10
1nyp_A		66	Pinch protein; LIM domain, protein recognition, ce	8e-10
1wig_A		73	KIAA1808 protein; LIM domain, zinc finger, metal-b	9e-10
1j2o_A		114	FLIN2, fusion of rhombotin-2 and LIM domain-bindin	2e-09
1j2o_A		114	FLIN2, fusion of rhombotin-2 and LIM domain-bindin	1e-04
1x62_A		79	C-terminal LIM domain protein 1; PDZ and LIM domai	2e-09
3f6q_B		72	LIM and senescent cell antigen-like-containing dom	3e-09
2l4z_A		123	DNA endonuclease RBBP8, LIM domain transcription L	7e-09
1iml_A		76	CRIP, cysteine rich intestinal protein; metal-bind	8e-09
1v6g_A		81	Actin binding LIM protein 2; LIM domain, zinc bind	1e-08
1g47_A		77	Pinch protein; LIM domain, Zn finger, cell adhesio	1e-08
2cu8_A		76	Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein	1e-07
2cor_A		79	Pinch protein; LIM domain, particularly interestin	2e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06
2l3k_A		123	Rhombotin-2, linker, LIM domain-binding protein 1;	8e-05
2co8_A		82	NEDD9 interacting protein with calponin homology a	2e-04

>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 72	Back alignment and structure

 Score = 74.5 bits (183), Expect = 5e-17
 Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 3/66 (4%)

Query: 144 KVCGGCNCDI---GYGNYLGCMGTYFHPNCFRCRSCGYPITEHEFSLSGKDPYHKSCFKE 200
             C GC   I   G   Y+      +H +CF C+ C   +    F     D     C K+
Sbjct: 6   SGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKD 65

Query: 201 LTHPKC 206
           ++ P  
Sbjct: 66  ISGPSS 71

PyMOL of 1x4l

>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 69	Back alignment and structure

>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus} Length = 182	Back alignment and structure

>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens} Length = 126	Back alignment and structure

>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens} Length = 126	Back alignment and structure

>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 80	Back alignment and structure

>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 70	Back alignment and structure

>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 72	Back alignment and structure

>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A Length = 169	Back alignment and structure

>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A Length = 169	Back alignment and structure

>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 72	Back alignment and structure

>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A Length = 81	Back alignment and structure

>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 80	Back alignment and structure

>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B Length = 188	Back alignment and structure

>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B Length = 188	Back alignment and structure

>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 80	Back alignment and structure

>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3 Length = 89	Back alignment and structure

>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 82	Back alignment and structure

>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A Length = 131	Back alignment and structure

>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens} Length = 77	Back alignment and structure

>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 90	Back alignment and structure

>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A Length = 192	Back alignment and structure

>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A Length = 192	Back alignment and structure

>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A Length = 192	Back alignment and structure

>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 70	Back alignment and structure

>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 81	Back alignment and structure

>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 Length = 101	Back alignment and structure

>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 Length = 101	Back alignment and structure

>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 81	Back alignment and structure

>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 72	Back alignment and structure

>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 82	Back alignment and structure

>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 91	Back alignment and structure

>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 76	Back alignment and structure

>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3 Length = 122	Back alignment and structure

>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B Length = 66	Back alignment and structure

>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 73	Back alignment and structure

>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3 Length = 114	Back alignment and structure

>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3 Length = 114	Back alignment and structure

>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 79	Back alignment and structure

>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B Length = 72	Back alignment and structure

>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens} Length = 123	Back alignment and structure

>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3 Length = 76	Back alignment and structure

>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 81	Back alignment and structure

>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 77	Back alignment and structure

>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 76	Back alignment and structure

>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 79	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 Length = 82	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		507
2jtn_A		182	LIM domain-binding protein 1, LIM/homeobox protein	99.89
2xqn_T		126	Testin, TESS; metal-binding protein, cytoskeleton,	99.89
2rgt_A		169	Fusion of LIM/homeobox protein LHX3, linker, INSU	99.88
2xjy_A		131	Rhombotin-2; oncoprotein, T-cell leukemia, proto-o	99.88
1rut_X		188	Flinc4, fusion protein of LMO4 protein and LIM dom	99.86
1b8t_A		192	Protein (CRP1); LIM domain, muscle differentiation	99.82
2cup_A		101	Skeletal muscle LIM-protein 1; four and half LIM d	99.8
1m3v_A		122	FLIN4, fusion of the LIM interacting domain of LDB	99.72
2ehe_A		82	Four and A half LIM domains 3; FHL-3, skeletal mus	99.67
1x3h_A		80	Leupaxin; paxillin family, protein-protein interac	99.67
2cuq_A		80	Four and A half LIM domains 3; structural genomics	99.67
2dlo_A		81	Thyroid receptor-interacting protein 6; LIM domain	99.65
1j2o_A		114	FLIN2, fusion of rhombotin-2 and LIM domain-bindin	99.64
1x63_A		82	Skeletal muscle LIM-protein 1; LIM domain, four an	99.63
1b8t_A		192	Protein (CRP1); LIM domain, muscle differentiation	99.62
1iml_A		76	CRIP, cysteine rich intestinal protein; metal-bind	99.58
1x6a_A		81	LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc fi	99.57
1a7i_A		81	QCRP2 (LIM1); LIM domain containing proteins, meta	99.57
2egq_A		77	FHL1 protein; LIM domain, four and A half LIM doma	99.56
2cu8_A		76	Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein	99.54
2dj7_A		80	Actin-binding LIM protein 3; LIM domain, Zn bindin	99.54
1x68_A		76	FHL5 protein; four-and-A-half LIM protein 5, zinc	99.53
2dar_A		90	PDZ and LIM domain protein 5; enigma homolog prote	99.53
2cur_A		69	Skeletal muscle LIM-protein 1; four and A half LIM	99.52
2d8z_A		70	Four and A half LIM domains 2; skeletal muscle LIM	99.52
1x4k_A		72	Skeletal muscle LIM-protein 3; LIM domain, structu	99.52
1wyh_A		72	SLIM 2, skeletal muscle LIM-protein 2; structural	99.51
2d8y_A		91	Eplin protein; LIM domain, epithelial protein LOST	99.51
1nyp_A		66	Pinch protein; LIM domain, protein recognition, ce	99.48
1x4l_A		72	Skeletal muscle LIM-protein 3; LIM domain, structu	99.48
1g47_A		77	Pinch protein; LIM domain, Zn finger, cell adhesio	99.47
1rut_X		188	Flinc4, fusion protein of LMO4 protein and LIM dom	99.45
2xjy_A		131	Rhombotin-2; oncoprotein, T-cell leukemia, proto-o	99.44
2d8x_A		70	Protein pinch; LIM domain, pinch protein, structur	99.43
1x64_A		89	Alpha-actinin-2 associated LIM protein; LIM domain	99.42
2xqn_T		126	Testin, TESS; metal-binding protein, cytoskeleton,	99.42
1x62_A		79	C-terminal LIM domain protein 1; PDZ and LIM domai	99.41
1v6g_A		81	Actin binding LIM protein 2; LIM domain, zinc bind	99.41
1x61_A		72	Thyroid receptor interacting protein 6; LIM domain	99.4
2cor_A		79	Pinch protein; LIM domain, particularly interestin	99.4
1wig_A		73	KIAA1808 protein; LIM domain, zinc finger, metal-b	99.39
2l3k_A		123	Rhombotin-2, linker, LIM domain-binding protein 1;	99.38
3f6q_B		72	LIM and senescent cell antigen-like-containing dom	99.36
2rgt_A		169	Fusion of LIM/homeobox protein LHX3, linker, INSU	99.34
2co8_A		82	NEDD9 interacting protein with calponin homology a	99.33
2jtn_A		182	LIM domain-binding protein 1, LIM/homeobox protein	99.31
2l4z_A		123	DNA endonuclease RBBP8, LIM domain transcription L	99.31
2iyb_E		65	Testin, TESS, TES; LIM domain, SH3-binding, tumour	99.29
1x6a_A		81	LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc fi	99.28
2egq_A		77	FHL1 protein; LIM domain, four and A half LIM doma	99.26
2ehe_A		82	Four and A half LIM domains 3; FHL-3, skeletal mus	99.22
2cuq_A		80	Four and A half LIM domains 3; structural genomics	99.21
1x3h_A		80	Leupaxin; paxillin family, protein-protein interac	99.17
1x63_A		82	Skeletal muscle LIM-protein 1; LIM domain, four an	99.16
1v6g_A		81	Actin binding LIM protein 2; LIM domain, zinc bind	99.16
2dlo_A		81	Thyroid receptor-interacting protein 6; LIM domain	99.12
2cup_A		101	Skeletal muscle LIM-protein 1; four and half LIM d	98.9
1wig_A		73	KIAA1808 protein; LIM domain, zinc finger, metal-b	98.73
2dar_A		90	PDZ and LIM domain protein 5; enigma homolog prote	98.57
2iyb_E		65	Testin, TESS, TES; LIM domain, SH3-binding, tumour	98.56
1x4k_A		72	Skeletal muscle LIM-protein 3; LIM domain, structu	98.54
1x4l_A		72	Skeletal muscle LIM-protein 3; LIM domain, structu	98.54
2d8z_A		70	Four and A half LIM domains 2; skeletal muscle LIM	98.53
2d8x_A		70	Protein pinch; LIM domain, pinch protein, structur	98.53
1x68_A		76	FHL5 protein; four-and-A-half LIM protein 5, zinc	98.52
2cur_A		69	Skeletal muscle LIM-protein 1; four and A half LIM	98.52
1x61_A		72	Thyroid receptor interacting protein 6; LIM domain	98.52
1nyp_A		66	Pinch protein; LIM domain, protein recognition, ce	98.52
2l3k_A		123	Rhombotin-2, linker, LIM domain-binding protein 1;	98.51
3f6q_B		72	LIM and senescent cell antigen-like-containing dom	98.48
1wyh_A		72	SLIM 2, skeletal muscle LIM-protein 2; structural	98.44
2cor_A		79	Pinch protein; LIM domain, particularly interestin	98.42
2l4z_A		123	DNA endonuclease RBBP8, LIM domain transcription L	98.38
2cu8_A		76	Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein	98.38
1g47_A		77	Pinch protein; LIM domain, Zn finger, cell adhesio	98.36
1x62_A		79	C-terminal LIM domain protein 1; PDZ and LIM domai	98.29
2co8_A		82	NEDD9 interacting protein with calponin homology a	98.28
2dj7_A		80	Actin-binding LIM protein 3; LIM domain, Zn bindin	98.27
1a7i_A		81	QCRP2 (LIM1); LIM domain containing proteins, meta	98.26
1x64_A		89	Alpha-actinin-2 associated LIM protein; LIM domain	98.26
2d8y_A		91	Eplin protein; LIM domain, epithelial protein LOST	98.22
1iml_A		76	CRIP, cysteine rich intestinal protein; metal-bind	98.18
1m3v_A		122	FLIN4, fusion of the LIM interacting domain of LDB	98.16
1j2o_A		114	FLIN2, fusion of rhombotin-2 and LIM domain-bindin	98.15
1zfo_A		31	LAsp-1; LIM domain, zinc-finger, metal-binding pro	96.8

>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}	Back alignment and structure

Probab=99.89  E-value=1.6e-23  Score=197.30  Aligned_cols=125  Identities=26%  Similarity=0.496  Sum_probs=106.9

Q ss_pred             CCCCCCCCCCCCccCCCceEEecCccccCCCcccCCCCCCCCCCceEeeCCcccchhhhhhhccccccccCCCcCCCCcc
Q 010581          140 PRSYKVCGGCNCDIGYGNYLGCMGTYFHPNCFRCRSCGYPITEHEFSLSGKDPYHKSCFKELTHPKCEVCHQYIPTNGAG  219 (507)
Q Consensus       140 ~~~~~~C~~C~k~I~~g~~l~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~pYCk~CY~k~f~pkC~~C~k~I~~~~~G  219 (507)
                      ....++|.+|+++|....++.++++.||+.||+|..|+++|.+..| .+++++||+.||.++|+++|.+|+++|.+.. .
T Consensus        57 ~~~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f-~~~g~~yC~~~y~~~f~~kC~~C~~~I~~~~-~  134 (182)
T 2jtn_A           57 TPEIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCF-SRGESVYCKDDFFKRFGTKCAACQLGIPPTQ-V  134 (182)
T ss_dssp             CCSCCBCBTSSSBCCCSEEEEETTEEECSSTTSCTTTCCCCSSCCE-EETTEEECHHHHHHTTSCCCTTTCCCCCSSC-C
T ss_pred             CCCCCcCccCCCCccCceeEEecCCeEccccCccCCCCCccCCCce-eECCEeeecCccccccccccccCCCccCCCc-e
Confidence            4567899999999986667899999999999999999999998765 7899999999999999999999999998753 1


Q ss_pred             eEEeeecCccccccCCCccCCCCcccCCCCCccccCCceeEecCCccccchhhhhhc
Q 010581          220 LIEYRCHPFWAQKYCPSHEHDHTSRCCSCERLESWNTRYYSLEDGRSLCLECMESAI  276 (507)
Q Consensus       220 ~I~~~~~~fWgqkyCp~h~H~~CF~C~~C~r~l~~g~~~~~l~dGr~~C~~C~~sav  276 (507)
                      .+.+..     +     +||..||+|..|++.|..|+.|+...||++||..||.++.
T Consensus       135 v~~a~~-----~-----~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~yC~~cy~~~~  181 (182)
T 2jtn_A          135 VRRAQD-----F-----VYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAK  181 (182)
T ss_dssp             CCEETT-----E-----ECCTTTCCCTTTCCCCCTTCEEEECTTSCEECHHHHHHHT
T ss_pred             EEecCC-----C-----CEEeCCCcCCCCCCCCCCCCceEEccCCEEECHHHHHHhh
Confidence            233322     2     2499999999999987767788888899999999998763

PyMOL of 2jtn

>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}	Back alignment and structure

>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A	Back alignment and structure

>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A	Back alignment and structure

>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B	Back alignment and structure

>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A	Back alignment and structure

>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3	Back alignment and structure

>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3	Back alignment and structure

>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3	Back alignment and structure

>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3	Back alignment and structure

>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3	Back alignment and structure

>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3	Back alignment and structure

>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3	Back alignment and structure

>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A	Back alignment and structure

>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3	Back alignment and structure

>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3	Back alignment and structure

>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A	Back alignment and structure

>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3	Back alignment and structure

>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3	Back alignment and structure

>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3	Back alignment and structure

>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3	Back alignment and structure

>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3	Back alignment and structure

>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3	Back alignment and structure

>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3	Back alignment and structure

>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3	Back alignment and structure

>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3	Back alignment and structure

>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B	Back alignment and structure

>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3	Back alignment and structure

>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3	Back alignment and structure

>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B	Back alignment and structure

>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A	Back alignment and structure

>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3	Back alignment and structure

>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3	Back alignment and structure

>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}	Back alignment and structure

>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3	Back alignment and structure

>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3	Back alignment and structure

>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3	Back alignment and structure

>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3	Back alignment and structure

>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3	Back alignment and structure

>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B	Back alignment and structure

>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A	Back alignment and structure

>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3	Back alignment and structure

>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}	Back alignment and structure

>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}	Back alignment and structure

>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}	Back alignment and structure

>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3	Back alignment and structure

>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3	Back alignment and structure

>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3	Back alignment and structure

>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3	Back alignment and structure

>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3	Back alignment and structure

>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3	Back alignment and structure

>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3	Back alignment and structure

>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3	Back alignment and structure

>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3	Back alignment and structure

>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}	Back alignment and structure

>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3	Back alignment and structure

>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3	Back alignment and structure

>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3	Back alignment and structure

>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3	Back alignment and structure

>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3	Back alignment and structure

>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3	Back alignment and structure

>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3	Back alignment and structure

>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B	Back alignment and structure

>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B	Back alignment and structure

>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3	Back alignment and structure

>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3	Back alignment and structure

>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}	Back alignment and structure

>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3	Back alignment and structure

>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3	Back alignment and structure

>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3	Back alignment and structure

>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3	Back alignment and structure

>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3	Back alignment and structure

>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A	Back alignment and structure

>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3	Back alignment and structure

>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3	Back alignment and structure

>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3	Back alignment and structure

>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3	Back alignment and structure

>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3	Back alignment and structure

>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		507
d1x3ha1		35	Leupaxin {Human (Homo sapiens) [TaxId: 9606]}	98.67
d1g47a2		35	Pinch (particularly interesting new Cys-His) prote	98.32
d2dara2		45	PDZ and LIM domain protein 5, Enigma {Human (Homo	98.11
d1b8ta4		49	Cysteine-rich (intestinal) protein, CRP, CRIP {Chi	98.08
d2d8xa2		26	Pinch (particularly interesting new Cys-His) prote	98.0
d2cuqa2		35	Four and a half LIM domains 3, FHL3 {Human (Homo s	97.97
d2dj7a2		36	Actin-binding LIM protein 3, abLIM-3 {Human (Homo	97.79
d1x63a1		37	Four and a half LIM domains protein 1, FHL-1 {Huma	97.79
d1u5sb1		31	Pinch (particularly interesting new Cys-His) prote	97.71
d1x3ha1		35	Leupaxin {Human (Homo sapiens) [TaxId: 9606]}	97.71
d2d8za2		32	Four and a half LIM domains protein 2, FHL2 {Human	97.71
d1imla2		48	Cysteine-rich (intestinal) protein, CRP, CRIP {Rat	97.64
d2dloa1		35	Thyroid receptor interacting protein 6, TRIP6 {Hum	97.56
d2cuqa2		35	Four and a half LIM domains 3, FHL3 {Human (Homo s	97.56
d2cuqa1		32	Four and a half LIM domains 3, FHL3 {Human (Homo s	97.54
d1x3ha2		32	Leupaxin {Human (Homo sapiens) [TaxId: 9606]}	97.48
d2dj7a1		31	Actin-binding LIM protein 3, abLIM-3 {Human (Homo	97.46
d2d8ya2		42	Eplin, LIMA1 {Human (Homo sapiens) [TaxId: 9606]}	97.43
d1zfoa_		30	LASP-1 {Pig (Sus scrofa) [TaxId: 9823]}	97.39
d1b8ta2		65	Cysteine-rich (intestinal) protein, CRP, CRIP {Chi	97.34
d1ibia2		31	Cysteine-rich (intestinal) protein, CRP, CRIP {Jap	97.34
d1v6ga1		41	Actin-binding LIM protein 2, abLIM2 {Human (Homo s	97.25
d1x4ka1		32	Four and a half LIM domains protein 2, FHL2 {Human	97.23
d2cu8a1		30	Cysteine-rich (intestinal) protein, CRP, CRIP {Hum	97.23
d1j2oa1		30	Rhombotin-2 (Lmo2) {Mouse (Mus musculus) [TaxId: 1	97.22
d1u5sb2		35	Pinch (particularly interesting new Cys-His) prote	97.22
d1rutx1		30	LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10	97.2
d2cu8a2		33	Cysteine-rich (intestinal) protein, CRP, CRIP {Hum	97.2
d1wyha1		32	Four and a half LIM domains 3, FHL3 {Human (Homo s	97.15
d2d8za2		32	Four and a half LIM domains protein 2, FHL2 {Human	97.03
d2dara1		32	PDZ and LIM domain protein 5, Enigma {Human (Homo	97.02
d2cura1		31	Four and a half LIM domains protein 1, FHL-1 {Huma	96.83
d1x4la1		29	Four and a half LIM domains protein 2, FHL2 {Human	96.81
d1g47a2		35	Pinch (particularly interesting new Cys-His) prote	96.77
d1x63a1		37	Four and a half LIM domains protein 1, FHL-1 {Huma	96.69
d2d8ya1		35	Eplin, LIMA1 {Human (Homo sapiens) [TaxId: 9606]}	96.65
d1a7ia2		32	Cysteine-rich (intestinal) protein, CRP, CRIP {Jap	96.6
d1b8ta3		43	Cysteine-rich (intestinal) protein, CRP, CRIP {Chi	96.53
d1x62a2		35	PDZ and LIM domain protein 1 Elfin {Human (Homo sa	96.46
d1ibia2		31	Cysteine-rich (intestinal) protein, CRP, CRIP {Jap	96.42
d1x4ka2		27	Four and a half LIM domains protein 2, FHL2 {Human	96.36
d1x64a1		45	PDZ and LIM domain protein 3, PDLIM3 {Mouse (Mus m	96.18
d2d8za1		26	Four and a half LIM domains protein 2, FHL2 {Human	96.17
d1v6ga1		41	Actin-binding LIM protein 2, abLIM2 {Human (Homo s	96.11
d1x68a1		29	Four and a half LIM domains protein 5, FHL-5 {Huma	96.08
d2co8a2		36	Nedd9 interacting protein with calponin homology,	96.01
d1wyha2		27	Four and a half LIM domains 3, FHL3 {Human (Homo s	96.01
d2dloa2		33	Thyroid receptor interacting protein 6, TRIP6 {Hum	95.94
d2cura2		26	Four and a half LIM domains protein 1, FHL-1 {Huma	95.91
d2d8za1		26	Four and a half LIM domains protein 2, FHL2 {Human	95.86
d2cuqa1		32	Four and a half LIM domains 3, FHL3 {Human (Homo s	95.7
d1x63a2		32	Four and a half LIM domains protein 1, FHL-1 {Huma	95.62
d2dloa1		35	Thyroid receptor interacting protein 6, TRIP6 {Hum	95.54
d1wyha1		32	Four and a half LIM domains 3, FHL3 {Human (Homo s	95.54
d1x4ka1		32	Four and a half LIM domains protein 2, FHL2 {Human	95.5
d1b8ta1		35	Cysteine-rich (intestinal) protein, CRP, CRIP {Chi	95.42
d1x6aa1		34	Lim domain kinase 2 {Human (Homo sapiens) [TaxId:	95.39
d2cura2		26	Four and a half LIM domains protein 1, FHL-1 {Huma	95.35
d2cupa3		27	Four and a half LIM domains protein 1, FHL-1 {Huma	95.21
d1a7ia1		28	Cysteine-rich (intestinal) protein, CRP, CRIP {Jap	95.1
d1x61a2		32	Thyroid receptor interacting protein 6, TRIP6 {Hum	95.09
d1rutx3		31	LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10	95.02
d1wiga1		32	Actin-binding LIM protein 2, abLIM2 {Human (Homo s	94.96
d1ibia1		28	Cysteine-rich (intestinal) protein, CRP, CRIP {Jap	94.78
d2cura1		31	Four and a half LIM domains protein 1, FHL-1 {Huma	94.73
d1x61a1		27	Thyroid receptor interacting protein 6, TRIP6 {Hum	93.88
d2d8ya2		42	Eplin, LIMA1 {Human (Homo sapiens) [TaxId: 9606]}	93.82
d1x6aa2		34	Lim domain kinase 2 {Human (Homo sapiens) [TaxId:	93.55
d2dara2		45	PDZ and LIM domain protein 5, Enigma {Human (Homo	93.48
d2dara1		32	PDZ and LIM domain protein 5, Enigma {Human (Homo	93.2
d1b8ta4		49	Cysteine-rich (intestinal) protein, CRP, CRIP {Chi	92.51
d2dj7a1		31	Actin-binding LIM protein 3, abLIM-3 {Human (Homo	92.45
d1x3ha2		32	Leupaxin {Human (Homo sapiens) [TaxId: 9606]}	92.41
d1u5sb2		35	Pinch (particularly interesting new Cys-His) prote	92.38
d2cu8a2		33	Cysteine-rich (intestinal) protein, CRP, CRIP {Hum	92.12
d1x64a2		31	PDZ and LIM domain protein 3, PDLIM3 {Mouse (Mus m	91.7
d1rutx2		34	LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10	91.55
d2d8xa2		26	Pinch (particularly interesting new Cys-His) prote	91.47
d1x6aa1		34	Lim domain kinase 2 {Human (Homo sapiens) [TaxId:	90.83
d1v6ga2		40	Actin-binding LIM protein 2, abLIM2 {Human (Homo s	90.49
d1imla2		48	Cysteine-rich (intestinal) protein, CRP, CRIP {Rat	90.48
d1x4la1		29	Four and a half LIM domains protein 2, FHL2 {Human	89.85
d1u5sb1		31	Pinch (particularly interesting new Cys-His) prote	89.75
d2cupa2		31	Four and a half LIM domains protein 1, FHL-1 {Huma	88.13
d1x6aa2		34	Lim domain kinase 2 {Human (Homo sapiens) [TaxId:	87.65
d1x62a1		31	PDZ and LIM domain protein 1 Elfin {Human (Homo sa	87.32
d2cupa3		27	Four and a half LIM domains protein 1, FHL-1 {Huma	86.61
d1x61a2		32	Thyroid receptor interacting protein 6, TRIP6 {Hum	85.59
d1b8ta2		65	Cysteine-rich (intestinal) protein, CRP, CRIP {Chi	84.96
d1x68a1		29	Four and a half LIM domains protein 5, FHL-5 {Huma	84.81
d2cora1		31	Pinch (particularly interesting new Cys-His) prote	84.63
d2d8xa1		32	Pinch (particularly interesting new Cys-His) prote	84.3
d2cora1		31	Pinch (particularly interesting new Cys-His) prote	83.97
d1wiga2		41	Actin-binding LIM protein 2, abLIM2 {Human (Homo s	83.8
d1g47a1		35	Pinch (particularly interesting new Cys-His) prote	83.32
d2cora2		35	Pinch (particularly interesting new Cys-His) prote	81.44
d1x68a2		34	Four and a half LIM domains protein 5, FHL-5 {Huma	81.02
d2cupa2		31	Four and a half LIM domains protein 1, FHL-1 {Huma	80.3
d1a7ia2		32	Cysteine-rich (intestinal) protein, CRP, CRIP {Jap	80.24

>d1x3ha1 g.39.1.3 (A:8-42) Leupaxin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Leupaxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=6.2e-09  Score=71.09  Aligned_cols=35  Identities=40%  Similarity=0.867  Sum_probs=32.8

Q ss_pred             CCCCCCCCCCCCCCCCccCCCceEEecCccccCCCc
Q 010581          136 SHYYPRSYKVCGGCNCDIGYGNYLGCMGTYFHPNCF  171 (507)
Q Consensus       136 ~~y~~~~~~~C~~C~k~I~~g~~l~algk~wHp~CF  171 (507)
                      .||...++++|++|+++|. |++|+|+|+.|||+||
T Consensus         1 ~DY~~~fapkC~~C~~~I~-g~~v~Al~~~wHpeCF   35 (35)
T d1x3ha1           1 KDFLAMFSPKCGGCNRPVL-ENYLSAMDTVWHPECF   35 (35)
T ss_dssp             CCCCCCCSCBCTTTCCBCC-SSCEEETTEEECTTTC
T ss_pred             CcHHHHhChhhhhcCCccc-chheeecCCccCcccC
Confidence            3788899999999999996 8999999999999998

PyMOL of d1x3ha1

>d1g47a2 g.39.1.3 (A:36-70) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2dara2 g.39.1.3 (A:8-52) PDZ and LIM domain protein 5, Enigma {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1b8ta4 g.39.1.3 (A:144-192) Cysteine-rich (intestinal) protein, CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}	Back information, alignment and structure

>d2cuqa2 g.39.1.3 (A:8-42) Four and a half LIM domains 3, FHL3 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2dj7a2 g.39.1.3 (A:8-43) Actin-binding LIM protein 3, abLIM-3 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1x63a1 g.39.1.3 (A:8-44) Four and a half LIM domains protein 1, FHL-1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1u5sb1 g.39.1.3 (B:72-102) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1x3ha1 g.39.1.3 (A:8-42) Leupaxin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2d8za2 g.39.1.3 (A:33-64) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1imla2 g.39.1.3 (A:29-76) Cysteine-rich (intestinal) protein, CRP, CRIP {Rat (Rattus rattus) [TaxId: 10117]}	Back information, alignment and structure

>d2dloa1 g.39.1.3 (A:8-42) Thyroid receptor interacting protein 6, TRIP6 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2cuqa2 g.39.1.3 (A:8-42) Four and a half LIM domains 3, FHL3 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2cuqa1 g.39.1.3 (A:43-74) Four and a half LIM domains 3, FHL3 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1x3ha2 g.39.1.3 (A:43-74) Leupaxin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2dj7a1 g.39.1.3 (A:44-74) Actin-binding LIM protein 3, abLIM-3 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2d8ya2 g.39.1.3 (A:44-85) Eplin, LIMA1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1zfoa_ g.39.1.4 (A:) LASP-1 {Pig (Sus scrofa) [TaxId: 9823]}	Back information, alignment and structure

>d1b8ta2 g.39.1.3 (A:36-100) Cysteine-rich (intestinal) protein, CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}	Back information, alignment and structure

>d1ibia2 g.39.1.3 (A:145-175) Cysteine-rich (intestinal) protein, CRP, CRIP {Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]}	Back information, alignment and structure

>d1v6ga1 g.39.1.3 (A:1-41) Actin-binding LIM protein 2, abLIM2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1x4ka1 g.39.1.3 (A:35-66) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2cu8a1 g.39.1.3 (A:8-37) Cysteine-rich (intestinal) protein, CRP, CRIP {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1j2oa1 g.39.1.3 (A:1-30) Rhombotin-2 (Lmo2) {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1u5sb2 g.39.1.3 (B:103-137) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1rutx1 g.39.1.3 (X:19-48) LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d2cu8a2 g.39.1.3 (A:38-70) Cysteine-rich (intestinal) protein, CRP, CRIP {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wyha1 g.39.1.3 (A:35-66) Four and a half LIM domains 3, FHL3 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2d8za2 g.39.1.3 (A:33-64) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2dara1 g.39.1.3 (A:53-84) PDZ and LIM domain protein 5, Enigma {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2cura1 g.39.1.3 (A:33-63) Four and a half LIM domains protein 1, FHL-1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1x4la1 g.39.1.3 (A:8-36) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1g47a2 g.39.1.3 (A:36-70) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1x63a1 g.39.1.3 (A:8-44) Four and a half LIM domains protein 1, FHL-1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2d8ya1 g.39.1.3 (A:9-43) Eplin, LIMA1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1a7ia2 g.39.1.3 (A:36-67) Cysteine-rich (intestinal) protein, CRP, CRIP {Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]}	Back information, alignment and structure

>d1b8ta3 g.39.1.3 (A:101-143) Cysteine-rich (intestinal) protein, CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}	Back information, alignment and structure

>d1x62a2 g.39.1.3 (A:8-42) PDZ and LIM domain protein 1 Elfin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ibia2 g.39.1.3 (A:145-175) Cysteine-rich (intestinal) protein, CRP, CRIP {Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]}	Back information, alignment and structure

>d1x4ka2 g.39.1.3 (A:8-34) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1x64a1 g.39.1.3 (A:8-52) PDZ and LIM domain protein 3, PDLIM3 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1v6ga1 g.39.1.3 (A:1-41) Actin-binding LIM protein 2, abLIM2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1x68a1 g.39.1.3 (A:8-36) Four and a half LIM domains protein 5, FHL-5 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2co8a2 g.39.1.3 (A:8-43) Nedd9 interacting protein with calponin homology, NICAL (MICAL1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wyha2 g.39.1.3 (A:8-34) Four and a half LIM domains 3, FHL3 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2dloa2 g.39.1.3 (A:43-75) Thyroid receptor interacting protein 6, TRIP6 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2cuqa1 g.39.1.3 (A:43-74) Four and a half LIM domains 3, FHL3 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1x63a2 g.39.1.3 (A:45-76) Four and a half LIM domains protein 1, FHL-1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2dloa1 g.39.1.3 (A:8-42) Thyroid receptor interacting protein 6, TRIP6 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wyha1 g.39.1.3 (A:35-66) Four and a half LIM domains 3, FHL3 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1x4ka1 g.39.1.3 (A:35-66) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1b8ta1 g.39.1.3 (A:1-35) Cysteine-rich (intestinal) protein, CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}	Back information, alignment and structure

>d1x6aa1 g.39.1.3 (A:8-41) Lim domain kinase 2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2cupa3 g.39.1.3 (A:8-34) Four and a half LIM domains protein 1, FHL-1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1a7ia1 g.39.1.3 (A:8-35) Cysteine-rich (intestinal) protein, CRP, CRIP {Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]}	Back information, alignment and structure

>d1x61a2 g.39.1.3 (A:35-66) Thyroid receptor interacting protein 6, TRIP6 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1rutx3 g.39.1.3 (X:83-113) LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1wiga1 g.39.1.3 (A:1-32) Actin-binding LIM protein 2, abLIM2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ibia1 g.39.1.3 (A:117-144) Cysteine-rich (intestinal) protein, CRP, CRIP {Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]}	Back information, alignment and structure

>d2cura1 g.39.1.3 (A:33-63) Four and a half LIM domains protein 1, FHL-1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1x61a1 g.39.1.3 (A:8-34) Thyroid receptor interacting protein 6, TRIP6 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2d8ya2 g.39.1.3 (A:44-85) Eplin, LIMA1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1x6aa2 g.39.1.3 (A:42-75) Lim domain kinase 2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2dara2 g.39.1.3 (A:8-52) PDZ and LIM domain protein 5, Enigma {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2dara1 g.39.1.3 (A:53-84) PDZ and LIM domain protein 5, Enigma {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1b8ta4 g.39.1.3 (A:144-192) Cysteine-rich (intestinal) protein, CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}	Back information, alignment and structure

>d2dj7a1 g.39.1.3 (A:44-74) Actin-binding LIM protein 3, abLIM-3 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1x3ha2 g.39.1.3 (A:43-74) Leupaxin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1u5sb2 g.39.1.3 (B:103-137) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2cu8a2 g.39.1.3 (A:38-70) Cysteine-rich (intestinal) protein, CRP, CRIP {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1x64a2 g.39.1.3 (A:53-83) PDZ and LIM domain protein 3, PDLIM3 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1rutx2 g.39.1.3 (X:49-82) LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1x6aa1 g.39.1.3 (A:8-41) Lim domain kinase 2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1v6ga2 g.39.1.3 (A:42-81) Actin-binding LIM protein 2, abLIM2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1imla2 g.39.1.3 (A:29-76) Cysteine-rich (intestinal) protein, CRP, CRIP {Rat (Rattus rattus) [TaxId: 10117]}	Back information, alignment and structure

>d1x4la1 g.39.1.3 (A:8-36) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1u5sb1 g.39.1.3 (B:72-102) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2cupa2 g.39.1.3 (A:35-65) Four and a half LIM domains protein 1, FHL-1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1x6aa2 g.39.1.3 (A:42-75) Lim domain kinase 2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1x62a1 g.39.1.3 (A:43-73) PDZ and LIM domain protein 1 Elfin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2cupa3 g.39.1.3 (A:8-34) Four and a half LIM domains protein 1, FHL-1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1x61a2 g.39.1.3 (A:35-66) Thyroid receptor interacting protein 6, TRIP6 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1b8ta2 g.39.1.3 (A:36-100) Cysteine-rich (intestinal) protein, CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}	Back information, alignment and structure

>d1x68a1 g.39.1.3 (A:8-36) Four and a half LIM domains protein 5, FHL-5 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2cora1 g.39.1.3 (A:43-73) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2d8xa1 g.39.1.3 (A:33-64) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2cora1 g.39.1.3 (A:43-73) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wiga2 g.39.1.3 (A:33-73) Actin-binding LIM protein 2, abLIM2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1g47a1 g.39.1.3 (A:1-35) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2cora2 g.39.1.3 (A:8-42) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1x68a2 g.39.1.3 (A:37-70) Four and a half LIM domains protein 5, FHL-5 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2cupa2 g.39.1.3 (A:35-65) Four and a half LIM domains protein 1, FHL-1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1a7ia2 g.39.1.3 (A:36-67) Cysteine-rich (intestinal) protein, CRP, CRIP {Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]}	Back information, alignment and structure