Citrus Sinensis ID: 010630
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 505 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FE59 | 510 | Sucrose transport protein | yes | no | 0.982 | 0.972 | 0.728 | 0.0 | |
| A2ZN77 | 501 | Sucrose transport protein | N/A | no | 0.924 | 0.932 | 0.656 | 1e-178 | |
| Q0ILJ3 | 501 | Sucrose transport protein | yes | no | 0.926 | 0.934 | 0.655 | 1e-178 | |
| Q39231 | 512 | Sucrose transport protein | no | no | 0.962 | 0.949 | 0.516 | 1e-143 | |
| Q67YF8 | 491 | Sucrose transport protein | no | no | 0.940 | 0.967 | 0.522 | 1e-138 | |
| Q9FG00 | 491 | Sucrose transport protein | no | no | 0.944 | 0.971 | 0.514 | 1e-138 | |
| Q39232 | 513 | Sucrose transport protein | no | no | 0.976 | 0.961 | 0.509 | 1e-136 | |
| Q03411 | 525 | Sucrose transport protein | N/A | no | 0.934 | 0.899 | 0.546 | 1e-135 | |
| Q9ZVK6 | 492 | Sucrose transport protein | no | no | 0.928 | 0.953 | 0.532 | 1e-135 | |
| Q6A329 | 492 | Putative sucrose transpor | no | no | 0.946 | 0.971 | 0.523 | 1e-135 |
| >sp|Q9FE59|SUC4_ARATH Sucrose transport protein SUC4 OS=Arabidopsis thaliana GN=SUC4 PE=1 SV=2 | Back alignment and function desciption |
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Score = 734 bits (1894), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/512 (72%), Positives = 427/512 (83%), Gaps = 16/512 (3%)
Query: 3 QDERQR--------SKSRASTSRAVARPPARAKVPLRKLLKVASVAGGIQFGWALQLSLL 54
QD R R ++ S+SR V PP R+KV R LL+VASVA GIQFGWALQLSLL
Sbjct: 6 QDRRHRVTRNRPPIARPSTSSSRPVVSPP-RSKVSKRVLLRVASVACGIQFGWALQLSLL 64
Query: 55 TPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVA 114
TPYVQELGIPHAWAS+IWLCGP+SGLFVQPLVGH SDRCTS++GRRRPFIV GA++I+++
Sbjct: 65 TPYVQELGIPHAWASVIWLCGPLSGLFVQPLVGHSSDRCTSKYGRRRPFIVAGAVAISIS 124
Query: 115 VLLIGLSADIGWLLGDR-GDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHR 173
V++IG +ADIGW GDR G +PRAI FV GFWILDVANNMTQGPCRALLADLT D+R
Sbjct: 125 VMVIGHAADIGWAFGDREGKIKPRAIVAFVLGFWILDVANNMTQGPCRALLADLTENDNR 184
Query: 174 RTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIA 233
RTRVAN YFSLFMAVGN+LGYATGS++GW+KI FT T ACNV+CANLKSAF++DV+FIA
Sbjct: 185 RTRVANGYFSLFMAVGNVLGYATGSYNGWYKIFTFTKTVACNVECANLKSAFYIDVVFIA 244
Query: 234 ITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIV 293
ITT +S SAAHEVPL S + E H Q+S EAFL E+FGTFRYF G +WIIL+V
Sbjct: 245 ITTILSVSAAHEVPLAS------LASEAHGQTSGTDEAFLSEIFGTFRYFPGNVWIILLV 298
Query: 294 TALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLME 353
TALTW+GWFPF+LFDTDWMGREIYGGEPN G +Y+ GV MGALGLMLNSV LGITSVLME
Sbjct: 299 TALTWIGWFPFILFDTDWMGREIYGGEPNIGTSYSAGVSMGALGLMLNSVFLGITSVLME 358
Query: 354 KLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILG 413
KLCRKWGAGF+WGISNILMA+CFL M+I +VA H+ Y GH+ PP IV AA++IFTILG
Sbjct: 359 KLCRKWGAGFVWGISNILMAICFLGMIITSFVASHLGYIGHEQPPASIVFAAVLIFTILG 418
Query: 414 GPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSP 473
PLAITYSVPYAL+SIR ESLGLGQGLSLGVLNLAIVIPQ++VS+GSGPWDQLFGGGNSP
Sbjct: 419 IPLAITYSVPYALISIRIESLGLGQGLSLGVLNLAIVIPQVIVSVGSGPWDQLFGGGNSP 478
Query: 474 AFAVGGISALAGGLIAILAIPRSSAQKPRALP 505
A AVG + GG++AILA+PR+ QKP LP
Sbjct: 479 ALAVGAATGFIGGIVAILALPRTRIQKPIPLP 510
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Responsible for the transport of sucrose into the cell, with the concomitant uptake of protons (symport system). Can also transport maltose at a lesser rate. May also transport biotin. Arabidopsis thaliana (taxid: 3702) |
| >sp|A2ZN77|SUT2_ORYSI Sucrose transport protein SUT2 OS=Oryza sativa subsp. indica GN=SUT2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 625 bits (1613), Expect = e-178, Method: Compositional matrix adjust.
Identities = 319/486 (65%), Positives = 390/486 (80%), Gaps = 19/486 (3%)
Query: 27 KVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLV 86
KVPLRKLL+ ASVA G+QFGWALQLSLLTPYVQELGIPHA+AS++WLCGP+SGL VQPLV
Sbjct: 21 KVPLRKLLRAASVACGVQFGWALQLSLLTPYVQELGIPHAFASLVWLCGPLSGLLVQPLV 80
Query: 87 GHFSDR---CTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDR---GDFRPRAIA 140
GH SDR S GRRRPFI GA SIA AVL +G SAD+G + GD G R AI
Sbjct: 81 GHLSDRIAPAASPLGRRRPFIAAGAASIAAAVLTVGFSADLGRIFGDSITPGSTRLGAII 140
Query: 141 VFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFS 200
V++ GFW+LDV NN TQGPCRA LADLT D RRTR+ANAYFSLFMA+GNILGYATG++S
Sbjct: 141 VYLVGFWLLDVGNNATQGPCRAFLADLTENDPRRTRIANAYFSLFMALGNILGYATGAYS 200
Query: 201 GWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHE-VPLGSHDQSAPFSE 259
GW+KI PFT+T +C++ CANLKSAF LD+I + +TTCI+ ++ E LGS + P +E
Sbjct: 201 GWYKIFPFTVTPSCSISCANLKSAFLLDIIILVVTTCITVASVQEPQSLGSDEADHPSTE 260
Query: 260 EGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGG 319
+ EAFLWELFG+FRYF+ +W++LIVTALTW+GWFPF+LFDTDWMGREIY G
Sbjct: 261 Q---------EAFLWELFGSFRYFTLPVWMVLIVTALTWIGWFPFILFDTDWMGREIYRG 311
Query: 320 EPNE---GQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCF 376
P++ Q+Y GVRMG+ GLMLNSV+LG TS+++EKLCRKWGAG +WG+SNILMALCF
Sbjct: 312 SPDDPSITQSYHDGVRMGSFGLMLNSVLLGFTSIVLEKLCRKWGAGLVWGVSNILMALCF 371
Query: 377 LAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGL 436
+AML++ YVA +MDY +PP GIVIA+L++FTILG PLAITYS+PYA+ + R E+LGL
Sbjct: 372 VAMLVITYVAKNMDYPPSGVPPTGIVIASLVVFTILGAPLAITYSIPYAMAASRVENLGL 431
Query: 437 GQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPRS 496
GQGL++G+LNLAIVIPQ++VS+GSGPWDQLFGGGN+PAFAV ++ GGL+AIL +PR+
Sbjct: 432 GQGLAMGILNLAIVIPQVIVSLGSGPWDQLFGGGNAPAFAVAAAASFIGGLVAILGLPRA 491
Query: 497 SAQKPR 502
R
Sbjct: 492 RIASRR 497
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Responsible for the transport of sucrose into the cell, with the concomitant uptake of protons (symport system). May also transport other glucosides. Oryza sativa subsp. indica (taxid: 39946) |
| >sp|Q0ILJ3|SUT2_ORYSJ Sucrose transport protein SUT2 OS=Oryza sativa subsp. japonica GN=SUT2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 625 bits (1611), Expect = e-178, Method: Compositional matrix adjust.
Identities = 318/485 (65%), Positives = 388/485 (80%), Gaps = 17/485 (3%)
Query: 27 KVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLV 86
KVPLRKLL+ ASVA G+QFGWALQLSLLTPYVQELGIPHA+AS++WLCGP+SGL VQPLV
Sbjct: 21 KVPLRKLLRAASVACGVQFGWALQLSLLTPYVQELGIPHAFASLVWLCGPLSGLLVQPLV 80
Query: 87 GHFSDR---CTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDR---GDFRPRAIA 140
GH SDR S GRRRPFI GA SIA AVL +G SAD+G + GD G R AI
Sbjct: 81 GHLSDRIAPAASPLGRRRPFIAAGAASIAAAVLTVGFSADLGRIFGDSITPGSTRLGAII 140
Query: 141 VFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFS 200
V++ GFW+LDV NN TQGPCRA LADLT D RRTR+ANAYFSLFMA+GNILGYATG++S
Sbjct: 141 VYLVGFWLLDVGNNATQGPCRAFLADLTENDPRRTRIANAYFSLFMALGNILGYATGAYS 200
Query: 201 GWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEE 260
GW+KI PFT+T +C++ CANLKSAF LD+I + +TTCI+ ++ E QS F +
Sbjct: 201 GWYKIFPFTVTPSCSISCANLKSAFLLDIIILVVTTCITVASVQE------PQS--FGSD 252
Query: 261 GHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGE 320
+ S EAFLWELFG+FRYF+ +W++LIVTALTW+GWFPF+LFDTDWMGREIY G
Sbjct: 253 EADHPSTEQEAFLWELFGSFRYFTLPVWMVLIVTALTWIGWFPFILFDTDWMGREIYRGS 312
Query: 321 PNE---GQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFL 377
P++ Q+Y GVRMG+ GLMLNSV+LG TS+++EKLCRKWGAG +WG+SNILMALCF+
Sbjct: 313 PDDPSITQSYHDGVRMGSFGLMLNSVLLGFTSIVLEKLCRKWGAGLVWGVSNILMALCFV 372
Query: 378 AMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLG 437
AML++ YVA +MDY +PP GIVIA+L++FTILG PLAITYS+PYA+ + R E+LGLG
Sbjct: 373 AMLVITYVAKNMDYPPSGVPPTGIVIASLVVFTILGAPLAITYSIPYAMAASRVENLGLG 432
Query: 438 QGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPRSS 497
QGL++G+LNLAIVIPQ++VS+GSGPWDQLFGGGN+PAFAV ++ GGL+AIL +PR+
Sbjct: 433 QGLAMGILNLAIVIPQVIVSLGSGPWDQLFGGGNAPAFAVAAAASFIGGLVAILGLPRAR 492
Query: 498 AQKPR 502
R
Sbjct: 493 IASRR 497
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Responsible for the transport of sucrose into the cell, with the concomitant uptake of protons (symport system). May also transport other glucosides. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q39231|SUC2_ARATH Sucrose transport protein SUC2 OS=Arabidopsis thaliana GN=SUC2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 510 bits (1313), Expect = e-143, Method: Compositional matrix adjust.
Identities = 265/513 (51%), Positives = 342/513 (66%), Gaps = 27/513 (5%)
Query: 2 PQDERQRSKSRASTSRAVARPPARAKVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQEL 61
P ++ S T P R LRK++ V+S+A G+QFGWALQLSLLTPYVQ L
Sbjct: 5 PMEKAANGASALETQTGELDQPER----LRKIISVSSIAAGVQFGWALQLSLLTPYVQLL 60
Query: 62 GIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLS 121
GIPH WAS+IWLCGP+SG+ VQP+VG+ SDRCTSRFGRRRPFIV GA + VAV LIG +
Sbjct: 61 GIPHKWASLIWLCGPISGMLVQPIVGYHSDRCTSRFGRRRPFIVAGAGLVTVAVFLIGYA 120
Query: 122 ADIGWLLGDRGDFRP--RAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVAN 179
ADIG +GD+ D P RAIA+F GFWILDVANN QGPCRA LADL+ + ++TR AN
Sbjct: 121 ADIGHSMGDQLDKPPKTRAIAIFALGFWILDVANNTLQGPCRAFLADLSAGNAKKTRTAN 180
Query: 180 AYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCIS 239
A+FS FMAVGN+LGYA GS+ +K++PFT+T +C++ CANLK+ FFL + + I T +S
Sbjct: 181 AFFSFFMAVGNVLGYAAGSYRNLYKVVPFTMTESCDLYCANLKTCFFLSITLLLIVTFVS 240
Query: 240 ASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWL 299
E P++ E + F E+FG F+ +W++LIVTAL W+
Sbjct: 241 LCYVKE---------KPWTPEPTADGKASNVPFFGEIFGAFKELKRPMWMLLIVTALNWI 291
Query: 300 GWFPFLLFDTDWMGREIYGGEPN------EGQNYATGVRMGALGLMLNSVVLGITSVLME 353
WFPFLLFDTDWMGRE+YGG + + Y GVR GALGLMLN++VLG S+ +E
Sbjct: 292 AWFPFLLFDTDWMGREVYGGNSDATATAASKKLYNDGVRAGALGLMLNAIVLGFMSLGVE 351
Query: 354 KLCRKW-GAGFIWGISNILMALCFLAMLILYYVAIHMDYRGH----DLPPNGIVIAALII 408
+ RK GA +WGI N ++A+C LAM ++ R H PP + AL +
Sbjct: 352 WIGRKLGGAKRLWGIVNFILAIC-LAMTVVVTKQAENHRRDHGGAKTGPPGNVTAGALTL 410
Query: 409 FTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFG 468
F ILG P AIT+S+P+AL SI + + G GQGLSLGVLNLAIV+PQ+V+S+G GP+D+LFG
Sbjct: 411 FAILGIPQAITFSIPFALASIFSTNSGAGQGLSLGVLNLAIVVPQMVISVGGGPFDELFG 470
Query: 469 GGNSPAFAVGGISALAGGLIAILAIPRSSAQKP 501
GGN PAF +G I+A G++A+ +P P
Sbjct: 471 GGNIPAFVLGAIAAAVSGVLALTVLPSPPPDAP 503
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Responsible for the transport of sucrose into the cell, with the concomitant uptake of protons (symport system). Can also transport other glucosides such as maltose, arbutin (hydroquinone-beta-D-glucoside), salicin (2-(hydroxymethyl)phenyl-beta-D-glucoside), alpha-phenylglucoside, beta-phenylglucoside, alpha-paranitrophenylglucoside, beta-paranitrophenylglucoside, and paranitrophenyl-beta-thioglucoside. May also transport biotin. Required for apoplastic phloem sucrose loading in source tissues (e.g leaves) in order to transport it to sink tissues (e.g. roots, flowers). Arabidopsis thaliana (taxid: 3702) |
| >sp|Q67YF8|SUC7_ARATH Sucrose transport protein SUC7 OS=Arabidopsis thaliana GN=SUC7 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 493 bits (1268), Expect = e-138, Method: Compositional matrix adjust.
Identities = 262/501 (52%), Positives = 339/501 (67%), Gaps = 26/501 (5%)
Query: 4 DERQRSKSRASTSRAVARPPARAKVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGI 63
++ + + R S+S P+ PLRK++ VAS+A GIQFGWALQLSLLTPYVQ LG+
Sbjct: 7 NKDETTVDRQSSSSVDLDGPS----PLRKMISVASIAAGIQFGWALQLSLLTPYVQLLGV 62
Query: 64 PHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSAD 123
PH W S IWLCGPVSGL VQP VG+FSDRCTSRFGRRRPFI GA+ +AV+V+LIG +AD
Sbjct: 63 PHKWPSFIWLCGPVSGLLVQPSVGYFSDRCTSRFGRRRPFIATGALLVAVSVVLIGYAAD 122
Query: 124 IGWLLGDRGD--FRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAY 181
G +GD+ D + RA+ +F GFWILDVANN QGPCRA L DL D ++TR ANA+
Sbjct: 123 FGHSMGDKIDKPVKMRAVVIFALGFWILDVANNTLQGPCRAFLGDLAAGDAQKTRTANAF 182
Query: 182 FSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISAS 241
FS FMAVGN+LGYA GS++ +KI PFT+T AC++ CANLKS FFL + + + T I+
Sbjct: 183 FSFFMAVGNVLGYAAGSYTNLYKIFPFTMTKACDIYCANLKSCFFLSITLLLVVTIIALW 242
Query: 242 AAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGW 301
+ Q +P ++ +E++ F E+FG F+ +W++LIVTAL W+ W
Sbjct: 243 YVED------KQWSPKADSDNEKTP-----FFGEIFGAFKVMKRPMWMLLIVTALNWIAW 291
Query: 302 FPFLLFDTDWMGREIYGGEPNEGQN----YATGVRMGALGLMLNSVVLGITSVLMEKLCR 357
FPFLL+DTDWMGRE+YGG+ Y G+ +GALGLMLNS+VLG+ S+ +E + R
Sbjct: 292 FPFLLYDTDWMGREVYGGDSKGDDKMKKLYNQGIHVGALGLMLNSIVLGVMSLGIEGISR 351
Query: 358 KW-GAGFIWGISNILMALCFLAMLILYYVAIHMDYR---GHDLPPNGIVIAALIIFTILG 413
K GA +WG NI++A+C LAM +L R LP +GI AL +F +LG
Sbjct: 352 KMGGAKRLWGAVNIILAVC-LAMTVLVTKKAEEHRRIAGPMALPTDGIRAGALTLFALLG 410
Query: 414 GPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSP 473
PLAIT+S+P+AL SI + S G GQ LSLGVLN+AIVIPQ++VS G GP D LFG GN P
Sbjct: 411 IPLAITFSIPFALASIISSSSGAGQRLSLGVLNMAIVIPQMIVSFGVGPIDALFGDGNLP 470
Query: 474 AFAVGGISALAGGLIAILAIP 494
F VG I+A ++A +P
Sbjct: 471 GFVVGAIAAAVSSIVAFTVLP 491
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May be responsible for the transport of glucosides into the cell, with the concomitant uptake of protons (symport system). Does not seem to transport sucrose. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FG00|SUC9_ARATH Sucrose transport protein SUC9 OS=Arabidopsis thaliana GN=SUC9 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 491 bits (1264), Expect = e-138, Method: Compositional matrix adjust.
Identities = 257/500 (51%), Positives = 341/500 (68%), Gaps = 23/500 (4%)
Query: 3 QDERQRSKSRASTSRAVARPPARAKVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQELG 62
+++ ++S+S V P+ PLRK++ VAS+A GIQFGWALQLSLLTPYVQ LG
Sbjct: 7 KEDAAPVDRQSSSSVVVPDEPS----PLRKMISVASIAAGIQFGWALQLSLLTPYVQLLG 62
Query: 63 IPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSA 122
+PH W+S IWLCGP+SGL VQP VG+FSDRC SRFGRRRPFI GA+ +A+AV+LIG +A
Sbjct: 63 VPHKWSSFIWLCGPISGLLVQPTVGYFSDRCKSRFGRRRPFIATGALLVALAVILIGFAA 122
Query: 123 DIGWLLGDRGD--FRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANA 180
D G +GD+ D + RA+ FV GFWILDVANN QGPCRA L DL D ++TR ANA
Sbjct: 123 DFGHTMGDKLDEAVKIRAVGFFVVGFWILDVANNTLQGPCRAFLGDLAAGDAKKTRTANA 182
Query: 181 YFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISA 240
FS FMAVGN+LGYA GS++ KI PFT+T AC++ CANLKS F + + + + T I+
Sbjct: 183 IFSFFMAVGNVLGYAAGSYTNLHKIFPFTVTKACDIYCANLKSCFIISITLLIVLTIIAL 242
Query: 241 SAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLG 300
+ Q +P ++ +E++ F E+FG F+ +W++L VTAL W+
Sbjct: 243 WYVED------KQWSPNADSDNEKTP-----FFGEIFGAFKVMKRPMWMLLAVTALNWIA 291
Query: 301 WFPFLLFDTDWMGREIYGGEP----NEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLC 356
WFPFLL+DTDWMGRE+YGG+ + Y G+++G+LGLMLNS+VLG+ S+++ +
Sbjct: 292 WFPFLLYDTDWMGREVYGGDSAGDDKMKKLYNHGIQVGSLGLMLNSIVLGVMSLVIGVIS 351
Query: 357 RKWGAGFIWGISNILMALCF-LAMLILYYVAIHMDYRGH-DLPPNGIVIAALIIFTILGG 414
+K GA +WG NI++A+C + +L+ H G LP N I AL +F ILG
Sbjct: 352 KKIGAKRLWGAVNIILAVCLAMTVLVTKKAEEHRKIAGRMALPTNAIRDGALSLFAILGI 411
Query: 415 PLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPA 474
PLAIT+S+P+AL SI + S G GQGLSLGVLN+AIVIPQ++VS G GP D LFGGGN P
Sbjct: 412 PLAITFSIPFALASIISSSSGAGQGLSLGVLNMAIVIPQMIVSFGVGPIDALFGGGNLPG 471
Query: 475 FAVGGISALAGGLIAILAIP 494
F VG I+AL ++A+ +P
Sbjct: 472 FVVGAIAALISSVVALTVLP 491
|
High-affinity sucrose transporter. Responsible for the transport of sucrose into the cell, with the concomitant uptake of protons (symport system). Can also transport a wide range of glucosides, such as helicin, salicin, arbutin, maltose, fraxin, esculin, uranose, alpha-methylglucoside, alpha-phenylglucoside and beta-phenylglucoside. Plays a role in flowering time transition delay. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q39232|SUC1_ARATH Sucrose transport protein SUC1 OS=Arabidopsis thaliana GN=SUC1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 484 bits (1246), Expect = e-136, Method: Compositional matrix adjust.
Identities = 259/508 (50%), Positives = 338/508 (66%), Gaps = 15/508 (2%)
Query: 5 ERQRSKSRASTSRAVARPPARAKVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIP 64
E ++ A+ + PLRK++ VAS+A G+QFGWALQLSLLTPYVQ LGIP
Sbjct: 5 ETEKPTKDAAALETQSPEDFDQPSPLRKIISVASIAAGVQFGWALQLSLLTPYVQLLGIP 64
Query: 65 HAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADI 124
H W+S+IWLCGPVSG+ VQP+VG SDRC S+FGRRRPFI GA +AVAV LIG +AD
Sbjct: 65 HKWSSLIWLCGPVSGMIVQPIVGFHSDRCRSKFGRRRPFIATGAALVAVAVFLIGYAADF 124
Query: 125 GWLLGDR--GDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYF 182
G+ +GD+ + RAI +F GFWILDVANN QGPCRA LADL D +RTRVANA+F
Sbjct: 125 GYKMGDKLEEKVKVRAIGIFALGFWILDVANNTLQGPCRAFLADLAAGDAKRTRVANAFF 184
Query: 183 SLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASA 242
S FMAVGN+LGYA GS++ K+ PFT+T AC++ CANLK+ FFL + + I T S
Sbjct: 185 SFFMAVGNVLGYAAGSYTNLHKMFPFTMTKACDIYCANLKTCFFLSITLLLIVTVTSLWY 244
Query: 243 AHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWF 302
++ P + + E++S V E+FG F+ +W++LIVTAL W+ WF
Sbjct: 245 VND----KQWSPPPRNADDDEKTSSV--PLFGEIFGAFKVMKRPMWMLLIVTALNWIAWF 298
Query: 303 PFLLFDTDWMGREIYGGEPNEGQN----YATGVRMGALGLMLNSVVLGITSVLMEKLCRK 358
PFLLFDTDWMGRE++GG+ + + Y+ GV+ GA+GLM NS+VLG S+ +E + RK
Sbjct: 299 PFLLFDTDWMGREVFGGDSDGNERSKKLYSLGVQSGAMGLMFNSIVLGFMSLGVEWIGRK 358
Query: 359 W-GAGFIWGISNILMALCF-LAMLILYYVAIHMDYRGHDLPPNGIVIA-ALIIFTILGGP 415
GA +WGI N ++A + +L+ + H G P+ V A AL +F +LG P
Sbjct: 359 LGGAKRLWGIVNFILAAGLAMTVLVTKFAEDHRKTAGDLAGPSASVKAGALSLFAVLGIP 418
Query: 416 LAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAF 475
LAIT+S P+AL SI + G GQGLSLGVLNLAIVIPQ++VS+G GP+D LFGGGN PAF
Sbjct: 419 LAITFSTPFALASIFSSCSGAGQGLSLGVLNLAIVIPQMIVSLGGGPFDALFGGGNLPAF 478
Query: 476 AVGGISALAGGLIAILAIPRSSAQKPRA 503
V I+A G++A+ +P P+A
Sbjct: 479 IVAAIAAAISGVLALTVLPSPPPDAPKA 506
|
Responsible for the transport of sucrose into the cell, with the concomitant uptake of protons (symport system). This transport is both voltage- and energy-dependent. Can also transport other glucosides such as maltose, alpha-phenylglucoside and beta-phenylglucoside. May also transport biotin. Required for normal pollen germination and anthocyanin accumulation induced by sucrose. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q03411|SUT_SPIOL Sucrose transport protein OS=Spinacia oleracea PE=2 SV=1 | Back alignment and function description |
|---|
Score = 483 bits (1244), Expect = e-135, Method: Compositional matrix adjust.
Identities = 264/483 (54%), Positives = 331/483 (68%), Gaps = 11/483 (2%)
Query: 23 PARAKVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFV 82
P A+ L+KL VASVA G+QFGWALQLSLLTPYVQ LGIPH WA+ IWLCGP+SG+ V
Sbjct: 28 PPEAEATLKKLGLVASVAAGVQFGWALQLSLLTPYVQLLGIPHTWAAYIWLCGPISGMIV 87
Query: 83 QPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGD-RGDF-RPRAIA 140
QPLVG++SDRCTSRFGRRRPFI GA +AVAV LIG +ADIG GD G+ +PRAIA
Sbjct: 88 QPLVGYYSDRCTSRFGRRRPFIAAGAALVAVAVGLIGFAADIGAASGDPTGNVAKPRAIA 147
Query: 141 VFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFS 200
VFV GFWILDVANN QGPCRALLAD+ +TR ANA+FS FMA+GNI GYA GS+S
Sbjct: 148 VFVVGFWILDVANNTLQGPCRALLADMAAGSQTKTRYANAFFSFFMALGNIGGYAAGSYS 207
Query: 201 GWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEE 260
+ + PFT T+AC+V CANLKS FF+ + + + T ++ S E + + +
Sbjct: 208 RLYTVFPFTKTAACDVYCANLKSCFFISITLLIVLTILALSVVKERQITIDEIQEEEDLK 267
Query: 261 GHEQSSDVHE-AFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGG 319
SS F +L G + + I+L+VTAL W+ WFPFLLFDTDWMG+E+YGG
Sbjct: 268 NRNNSSGCARLPFFGQLIGALKDLPKPMLILLLVTALNWIAWFPFLLFDTDWMGKEVYGG 327
Query: 320 EPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRK-WGAGFIWGISNILMALCFLA 378
EG+ Y GV GALGLM+NSVVLG+ S+ +E L R GA +WGI NI++A+C
Sbjct: 328 TVGEGKLYDQGVHAGALGLMINSVVLGVMSLSIEGLARMVGGAKRLWGIVNIILAVCLAM 387
Query: 379 MLILYYVAIHMDYRGHDL-------PPNGIVIAALIIFTILGGPLAITYSVPYALVSIRT 431
+++ A H H + PP G+ AL IF +LG PLAIT+S+P+AL SI +
Sbjct: 388 TVLVTKSAEHFRDSHHIMGSAVPPPPPAGVKGGALAIFAVLGIPLAITFSIPFALASIFS 447
Query: 432 ESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAIL 491
S G GQGLSLGVLNLAIV+PQ+ VS+ SGPWD +FGGGN PAF VG ++A A +++
Sbjct: 448 ASSGSGQGLSLGVLNLAIVVPQMFVSVTSGPWDAMFGGGNLPAFVVGAVAATASAVLSFT 507
Query: 492 AIP 494
+P
Sbjct: 508 LLP 510
|
Responsible for the transport of sucrose into the cell, with the concomitant uptake of protons (symport system). Can also transport maltose at a lesser rate. Spinacia oleracea (taxid: 3562) |
| >sp|Q9ZVK6|SUC8_ARATH Sucrose transport protein SUC8 OS=Arabidopsis thaliana GN=SUC8 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 483 bits (1242), Expect = e-135, Method: Compositional matrix adjust.
Identities = 266/500 (53%), Positives = 338/500 (67%), Gaps = 31/500 (6%)
Query: 5 ERQRSKSRASTSRAVARPPARAKVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIP 64
+RQ S S A PLRK++ VAS+A GIQFGWALQLSLLTPYVQ LG+P
Sbjct: 14 DRQSSSSLADLD---------GPSPLRKMISVASIAAGIQFGWALQLSLLTPYVQLLGVP 64
Query: 65 HAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADI 124
H W+S IWLCGPVSGL VQP VG+FSDRCTSRFGRRRPFI GA+ +AVAV+LIG +AD
Sbjct: 65 HKWSSFIWLCGPVSGLLVQPSVGYFSDRCTSRFGRRRPFIATGALLVAVAVVLIGYAADF 124
Query: 125 GWLLGDRGD--FRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYF 182
G +GD+ D + RA+ +F GFWILDVANN QGPCRA L DL D ++TR ANA+F
Sbjct: 125 GHSMGDKIDKPVKMRAVVIFALGFWILDVANNTLQGPCRAFLGDLAAGDAKKTRTANAFF 184
Query: 183 SLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASA 242
S FMAVGN+LGYA GS++ +KI PFT+T AC++ CANLKS FFL + + + T I+
Sbjct: 185 SFFMAVGNVLGYAAGSYTNLYKIFPFTMTKACDIYCANLKSCFFLSITLLLVVTIIALWY 244
Query: 243 AHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWF 302
+ Q +P ++ +E++ F E+FG F+ +W++LIVTAL W+ WF
Sbjct: 245 VED------KQWSPKADSDNEKTP-----FFGEIFGAFKVMKRPMWMLLIVTALNWIAWF 293
Query: 303 PFLLFDTDWMGREIYGGEPNEGQN----YATGVRMGALGLMLNSVVLGITSVLMEKLCRK 358
PFLL+DTDWMGRE+YGG+ Y G+ +GALGLMLNS+VLGI S+ +E + +K
Sbjct: 294 PFLLYDTDWMGREVYGGDSKGDDKMKKLYNQGIHVGALGLMLNSIVLGIVSLGIEGISKK 353
Query: 359 W-GAGFIWGISNILMALCFLAMLILYYVAIHMDYR---GHDLPPNGIVIAALIIFTILGG 414
GA +WG NI++A+C LAM +L R LP +GI AL +F +LG
Sbjct: 354 IGGAKRLWGAVNIILAVC-LAMTVLVTKKAEEHRRIAGPMALPTDGIRAGALTLFALLGI 412
Query: 415 PLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPA 474
PLAIT+S+P+AL SI + S G GQGLSLGVLN+AIVIPQ++VS G GP D LFGGGN P
Sbjct: 413 PLAITFSIPFALASIISSSSGAGQGLSLGVLNMAIVIPQMIVSFGVGPIDALFGGGNLPR 472
Query: 475 FAVGGISALAGGLIAILAIP 494
F VG I+A ++A +P
Sbjct: 473 FVVGAIAAAISSVVAFTVLP 492
|
Responsible for the transport of sucrose into the cell, with the concomitant uptake of protons (symport system). Can also transport maltose at a lesser rate. May also transport biotin. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q6A329|SUC6_ARATH Putative sucrose transport protein SUC6 OS=Arabidopsis thaliana GN=SUC6 PE=5 SV=2 | Back alignment and function description |
|---|
Score = 480 bits (1236), Expect = e-135, Method: Compositional matrix adjust.
Identities = 263/502 (52%), Positives = 338/502 (67%), Gaps = 24/502 (4%)
Query: 5 ERQRSKSRASTSRAVARPPA--RAKVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQELG 62
+ Q +K A+ +R + A P+RK++ VAS+A GIQFGWALQLSLLTPYVQ LG
Sbjct: 3 DLQANKDAAAVNRQSSSSSADLNGPSPMRKMISVASIAAGIQFGWALQLSLLTPYVQLLG 62
Query: 63 IPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSA 122
+PH W+S IWLCGPVSGL VQP VG+FSDRC SRFGRRRPFI GA+ +AVAV+LIG +A
Sbjct: 63 VPHKWSSFIWLCGPVSGLLVQPSVGYFSDRCKSRFGRRRPFIAMGALLVAVAVVLIGYAA 122
Query: 123 DIGWLLGDRGD--FRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANA 180
D G +GD+ D + RA+ +F GFWILDVANN QGPCRA L DL D ++TR ANA
Sbjct: 123 DFGHSMGDKVDEPVKMRAVVIFALGFWILDVANNTLQGPCRAFLGDLAAGDAKKTRTANA 182
Query: 181 YFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISA 240
+FS FMAVGN+LGYA GS++ +KI PFT+T AC++ CANLKS FFL + + + T I+
Sbjct: 183 FFSFFMAVGNVLGYAAGSYTNLYKIFPFTMTKACDIYCANLKSCFFLSITLLLVVTIIAL 242
Query: 241 SAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLG 300
+ Q +P ++ +E++ F E+FG F+ +W++LIVTAL W+
Sbjct: 243 WYVED------KQWSPKADSDNEKTP-----FFGEIFGAFKVMKRPMWMLLIVTALNWIA 291
Query: 301 WFPFLLFDTDWMGREIYGGEPNEGQN----YATGVRMGALGLMLNSVVLGITSVLMEKLC 356
WFPFLL+DTDWMGRE+YGG+ Y G+ +G LGLMLNS+VLG S+ +E +
Sbjct: 292 WFPFLLYDTDWMGREVYGGDSKGDDKMKKLYNQGIHVGGLGLMLNSIVLGFMSLGIEGIS 351
Query: 357 RKW-GAGFIWGISNILMALCFLAMLILYYVAIHMDYR---GHDLPPNGIVIAALIIFTIL 412
RK GA +WG NI++A+C LAM +L R LP +GI AL +F +L
Sbjct: 352 RKMGGAKRLWGAVNIILAVC-LAMTVLVTKKAEEHRRIAGPMALPTDGIRAGALTLFALL 410
Query: 413 GGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNS 472
G PLAIT+S+P+AL SI + S G GQGLSLGVLN+ IVIPQ+VVS G GP D LFGGGN
Sbjct: 411 GIPLAITFSIPFALASIISSSSGAGQGLSLGVLNMTIVIPQMVVSFGVGPIDALFGGGNL 470
Query: 473 PAFAVGGISALAGGLIAILAIP 494
P F VG I+A ++A +P
Sbjct: 471 PGFVVGAIAAAISSVVAFSVLP 492
|
May be responsible for the transport of glucosides into the cell, with the concomitant uptake of protons (symport system). Does not seem to transport sucrose. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 505 | ||||||
| 49609488 | 498 | putative sucrose-H+ symporter [Datisca g | 0.976 | 0.989 | 0.805 | 0.0 | |
| 118132677 | 498 | sucrose transporter 4 [Hevea brasiliensi | 0.978 | 0.991 | 0.787 | 0.0 | |
| 282154858 | 501 | sucrose transporter [Nicotiana tabacum] | 0.992 | 1.0 | 0.742 | 0.0 | |
| 38327323 | 499 | sucrose transporter [Malus x domestica] | 0.984 | 0.995 | 0.766 | 0.0 | |
| 118132673 | 498 | sucrose transporter 5 [Hevea brasiliensi | 0.926 | 0.939 | 0.794 | 0.0 | |
| 225458976 | 501 | PREDICTED: sucrose transport protein SUC | 0.982 | 0.990 | 0.774 | 0.0 | |
| 74476785 | 496 | sucrose transporter type 4 [Manihot escu | 0.974 | 0.991 | 0.781 | 0.0 | |
| 5882292 | 501 | sucrose transporter [Vitis vinifera] | 0.982 | 0.990 | 0.772 | 0.0 | |
| 6434829 | 501 | putative sucrose transporter [Vitis vini | 0.982 | 0.990 | 0.770 | 0.0 | |
| 350538461 | 500 | sucrose transporter [Solanum lycopersicu | 0.984 | 0.994 | 0.737 | 0.0 |
| >gi|49609488|emb|CAG70682.1| putative sucrose-H+ symporter [Datisca glomerata] | Back alignment and taxonomy information |
|---|
Score = 799 bits (2064), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/493 (80%), Positives = 437/493 (88%)
Query: 12 RASTSRAVARPPARAKVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASII 71
A RA ARPP +A+V LRKLL+V+SVA GIQFGWALQLSLLTPYVQELGIPHAWAS+I
Sbjct: 5 EADRHRARARPPVQARVSLRKLLRVSSVACGIQFGWALQLSLLTPYVQELGIPHAWASVI 64
Query: 72 WLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDR 131
WLCGP+SGLFVQPLVGH SDRCTSRFGRRRPFIV GA+SI VAVL+IG SADIG L+GDR
Sbjct: 65 WLCGPLSGLFVQPLVGHMSDRCTSRFGRRRPFIVVGALSITVAVLIIGYSADIGSLIGDR 124
Query: 132 GDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNI 191
G +P AIA FV GFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGN+
Sbjct: 125 GTVKPGAIATFVVGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNV 184
Query: 192 LGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSH 251
LGYATGS+SGWFKI P TLTSACNV+CANLKSAF LD++FIAITT +S SAA E PL
Sbjct: 185 LGYATGSYSGWFKIFPLTLTSACNVNCANLKSAFLLDIVFIAITTYLSISAAQESPLDPT 244
Query: 252 DQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDW 311
D+SA +EEG SS EAFLWELFG FRYFS +IW+I VTALTW+GWFPFLLFDTDW
Sbjct: 245 DRSANITEEGPGPSSHTEEAFLWELFGAFRYFSASIWVIFFVTALTWIGWFPFLLFDTDW 304
Query: 312 MGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNIL 371
MGREIYGG+PNEGQNY+TGVRMGALGLMLNSVVLGITSVLMEKLCR WGAGF+WG+SNIL
Sbjct: 305 MGREIYGGKPNEGQNYSTGVRMGALGLMLNSVVLGITSVLMEKLCRYWGAGFVWGVSNIL 364
Query: 372 MALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRT 431
M+LCFLAML++ +VA +DY GH LPP+ IV+AAL+IF ILG PLAITYSVPYAL+S R
Sbjct: 365 MSLCFLAMLVVTFVAKRIDYIGHKLPPDVIVVAALVIFAILGIPLAITYSVPYALISTRI 424
Query: 432 ESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAIL 491
ESLGLGQGLS+GVLNLAIVIPQ+VVS+GSGPWDQLFGGGNSPAFAV ++A A GL+AIL
Sbjct: 425 ESLGLGQGLSMGVLNLAIVIPQVVVSLGSGPWDQLFGGGNSPAFAVAAVAAFASGLVAIL 484
Query: 492 AIPRSSAQKPRAL 504
AIPRS AQKPRAL
Sbjct: 485 AIPRSRAQKPRAL 497
|
Source: Datisca glomerata Species: Datisca glomerata Genus: Datisca Family: Datiscaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|118132677|gb|ABK60191.1| sucrose transporter 4 [Hevea brasiliensis] | Back alignment and taxonomy information |
|---|
Score = 797 bits (2058), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/494 (78%), Positives = 426/494 (86%)
Query: 12 RASTSRAVARPPARAKVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASII 71
+A + RA ARPP +VPLR+LL+V SVAGGIQFGWALQLSLLTPYVQELGIPH WASII
Sbjct: 5 QAESHRARARPPVVRRVPLRQLLRVTSVAGGIQFGWALQLSLLTPYVQELGIPHKWASII 64
Query: 72 WLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDR 131
WLCGP+SGL VQPLVGH SDRC SRFGRRRPFI GA I AVL+IG SADIGWLLGDR
Sbjct: 65 WLCGPLSGLVVQPLVGHMSDRCNSRFGRRRPFIFAGAGLICFAVLIIGHSADIGWLLGDR 124
Query: 132 GDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNI 191
G+ RPRAI VFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNI
Sbjct: 125 GNTRPRAIGVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNI 184
Query: 192 LGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSH 251
LGYATG+FS WFK+ PFT+TSACN DCANLKSAF+LD++F+ ITT +S +AA E PLG
Sbjct: 185 LGYATGAFSNWFKVFPFTVTSACNADCANLKSAFYLDIVFMVITTYLSITAAQESPLGLS 244
Query: 252 DQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDW 311
D+S P + + QSS EAFLWELFGTFRYF +W IL+VTAL W+GWFPFLLFDTDW
Sbjct: 245 DRSTPIAADVSGQSSHAQEAFLWELFGTFRYFPWPVWTILLVTALNWIGWFPFLLFDTDW 304
Query: 312 MGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNIL 371
MGREIYGG+PNEGQNY GVR GA LMLNSV LGITSVLMEKLCRKWGAGFIWGISNIL
Sbjct: 305 MGREIYGGKPNEGQNYNIGVRTGAFALMLNSVFLGITSVLMEKLCRKWGAGFIWGISNIL 364
Query: 372 MALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRT 431
MALCFLAMLI YVA H+ Y GHDLPPNGIVI A++IF +LG PLAITYSVPYAL+S R
Sbjct: 365 MALCFLAMLITSYVANHIGYLGHDLPPNGIVITAVVIFAVLGVPLAITYSVPYALISSRI 424
Query: 432 ESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAIL 491
E LGLGQGLS+GVLNLAIV PQ++VS+GSGPWDQLFGGGNSPAFAVG ++A AGG++AIL
Sbjct: 425 EPLGLGQGLSMGVLNLAIVTPQVIVSLGSGPWDQLFGGGNSPAFAVGALAAFAGGVVAIL 484
Query: 492 AIPRSSAQKPRALP 505
IPRS A KPRA P
Sbjct: 485 GIPRSGAPKPRAPP 498
|
Source: Hevea brasiliensis Species: Hevea brasiliensis Genus: Hevea Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|282154858|dbj|BAI60050.1| sucrose transporter [Nicotiana tabacum] | Back alignment and taxonomy information |
|---|
Score = 773 bits (1996), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/505 (74%), Positives = 433/505 (85%), Gaps = 4/505 (0%)
Query: 1 MPQDERQRSKSRASTSRAVARPPARAKVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQE 60
MP+ ER R++ A R PA+A+VPLR LL+VASVAGGIQFGWALQLSLLTPYVQE
Sbjct: 1 MPEIERLRTRHNRP---AAIREPAKARVPLRLLLRVASVAGGIQFGWALQLSLLTPYVQE 57
Query: 61 LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGL 120
LGIPHAWASIIWLCGP+SGL VQPLVGH SD+CTSRFGRRRPFIV GA+SI +AVL+IG
Sbjct: 58 LGIPHAWASIIWLCGPLSGLLVQPLVGHMSDKCTSRFGRRRPFIVAGAVSIMIAVLIIGF 117
Query: 121 SADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANA 180
SADIGW LGDRG+ + RAIA F+ GFW+LDVANNMTQGPCRALLADLT KDHRRTRVANA
Sbjct: 118 SADIGWFLGDRGEIKVRAIAAFIVGFWLLDVANNMTQGPCRALLADLTMKDHRRTRVANA 177
Query: 181 YFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISA 240
YFSLFMA+GNILG+ATGS+S W+KI PFTL SAC ++CANLK+AF LD+IFIA TT IS
Sbjct: 178 YFSLFMAIGNILGFATGSYSSWYKIFPFTLNSACTINCANLKAAFILDIIFIATTTYISI 237
Query: 241 SAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLG 300
SAA+E PL + S+ EE E S EAFLWELFGTF+YF G +W+IL+VTALTW+G
Sbjct: 238 SAANEQPLDPNHCSSHTGEEISETSHGQEEAFLWELFGTFKYFPGIVWVILLVTALTWIG 297
Query: 301 WFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWG 360
WFPFLLFDTDW GREIYGGEPN+G+NY+ GVRMG+LGLMLNSV+LG+TS+LMEKLCRKWG
Sbjct: 298 WFPFLLFDTDWFGREIYGGEPNDGKNYSAGVRMGSLGLMLNSVLLGVTSLLMEKLCRKWG 357
Query: 361 AGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITY 420
AGF WG+SN++M+LCF+AMLI+ V ++D G LPP+GIVIAALI+F +LG PLAITY
Sbjct: 358 AGFTWGVSNVVMSLCFIAMLIITAVRSNIDI-GQGLPPDGIVIAALIVFALLGIPLAITY 416
Query: 421 SVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGI 480
SVPYALVS R E+LGLGQGLS+GVLNLAIV PQIVVS+GSGPWD+LFGGGNSPAF V +
Sbjct: 417 SVPYALVSSRIEALGLGQGLSMGVLNLAIVFPQIVVSLGSGPWDELFGGGNSPAFVVAAL 476
Query: 481 SALAGGLIAILAIPRSSAQKPRALP 505
SA AGGL+AILAIPR+ +KP+ LP
Sbjct: 477 SAFAGGLVAILAIPRTRVEKPKILP 501
|
Source: Nicotiana tabacum Species: Nicotiana tabacum Genus: Nicotiana Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|38327323|gb|AAR17700.1| sucrose transporter [Malus x domestica] | Back alignment and taxonomy information |
|---|
Score = 771 bits (1991), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/505 (76%), Positives = 438/505 (86%), Gaps = 8/505 (1%)
Query: 1 MPQDERQRSKSRASTSRAVARPPARAKVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQE 60
MP + R R ARP R +VPLR+LL+VASVA GIQFGWALQLSLLTPYVQE
Sbjct: 1 MPAPDTDRH-------RVGARPAVRTRVPLRQLLRVASVACGIQFGWALQLSLLTPYVQE 53
Query: 61 LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGL 120
LGIPHAWAS+IWLCGP+SGL VQPLVGH SDRCTSR+GRRRPFIV GA IAV+VL+IG
Sbjct: 54 LGIPHAWASVIWLCGPLSGLVVQPLVGHMSDRCTSRYGRRRPFIVVGAACIAVSVLIIGF 113
Query: 121 SADIGWLLGDRGD-FRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVAN 179
SADIGWLLGDRG RPRAIAVFVFGFWILDVANN+TQGPCRALLADLT KD+RRTRVAN
Sbjct: 114 SADIGWLLGDRGGGVRPRAIAVFVFGFWILDVANNVTQGPCRALLADLTEKDYRRTRVAN 173
Query: 180 AYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCIS 239
AYFSLFMAVGN+LGYATGS S FK+ PF++T ACNV+CANLKSAFF+D FIAITT IS
Sbjct: 174 AYFSLFMAVGNVLGYATGSISYLFKVFPFSITPACNVNCANLKSAFFVDTAFIAITTWIS 233
Query: 240 ASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWL 299
SAA PLGS +++ PF++EG QSS + EAFLWELFGTFRYF G++W+IL+V AL W+
Sbjct: 234 ISAAQVTPLGSSNRTTPFADEGPGQSSHIEEAFLWELFGTFRYFPGSVWLILLVIALNWI 293
Query: 300 GWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKW 359
GWFPFLLFDTDWMGREIYGG+PNEG NY+TGVRMGALGLMLNSV+LGITSVLMEKLCRKW
Sbjct: 294 GWFPFLLFDTDWMGREIYGGKPNEGINYSTGVRMGALGLMLNSVILGITSVLMEKLCRKW 353
Query: 360 GAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAIT 419
GAGF+WGIS+ILM LCF AML++ +V + RGHDLPP+GIVIAAL++F +LG PLAIT
Sbjct: 354 GAGFVWGISSILMTLCFFAMLVITFVNKSIGVRGHDLPPDGIVIAALVVFAVLGIPLAIT 413
Query: 420 YSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGG 479
YSVPYALVS R ESLGLGQGLS+GVLNLAIVIPQ++VS+GSGPWDQLFGGGN PAFAV
Sbjct: 414 YSVPYALVSSRIESLGLGQGLSMGVLNLAIVIPQVIVSLGSGPWDQLFGGGNVPAFAVAA 473
Query: 480 ISALAGGLIAILAIPRSSAQKPRAL 504
+++LA GL+AILAIPRS+A KPRA+
Sbjct: 474 VASLASGLVAILAIPRSAAPKPRAV 498
|
Source: Malus x domestica Species: Malus x domestica Genus: Malus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|118132673|gb|ABK60189.1| sucrose transporter 5 [Hevea brasiliensis] | Back alignment and taxonomy information |
|---|
Score = 770 bits (1987), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/468 (79%), Positives = 412/468 (88%)
Query: 38 SVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRF 97
S+AGGIQFGWALQLSLLTPYVQELGIPHAWAS+IWLCGP+SGL VQPLVGH SDRCTSRF
Sbjct: 31 SIAGGIQFGWALQLSLLTPYVQELGIPHAWASVIWLCGPLSGLVVQPLVGHMSDRCTSRF 90
Query: 98 GRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQ 157
GRRRPFI GA I +VL+IG SADIGWLLGDRG+ RPRAI VFVFGFWILDVANNMTQ
Sbjct: 91 GRRRPFIFTGASLICFSVLIIGHSADIGWLLGDRGNTRPRAIGVFVFGFWILDVANNMTQ 150
Query: 158 GPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVD 217
GPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILG+ATG+FS WFK+ PFT+TSACNVD
Sbjct: 151 GPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGFATGAFSKWFKVFPFTVTSACNVD 210
Query: 218 CANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELF 277
CANLKSAF+LD++F+ IT +S +AA E PL D+S P +E+ QSS EAFLWELF
Sbjct: 211 CANLKSAFYLDIVFMVITAYLSITAAQESPLCLSDRSTPIAEDVSGQSSHAQEAFLWELF 270
Query: 278 GTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALG 337
GTFRYF +W IL+VTAL W+GWFPFLLFDTDWMGREIYGG+PNEGQNY GVR GA
Sbjct: 271 GTFRYFPWPVWTILLVTALNWIGWFPFLLFDTDWMGREIYGGKPNEGQNYNIGVRTGAFA 330
Query: 338 LMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLP 397
LMLNSV LG+TS+ ME+LCRKWGAGFIWGISNILMALCFLAMLI YVA H+ Y GHDLP
Sbjct: 331 LMLNSVFLGVTSLFMERLCRKWGAGFIWGISNILMALCFLAMLITSYVANHIGYLGHDLP 390
Query: 398 PNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVS 457
P+GIVIAA++IF +LG PLAITYSVPYAL+S R E LGLGQGLS+GVLNLAIVIPQ++VS
Sbjct: 391 PHGIVIAAIVIFAVLGVPLAITYSVPYALISSRIEPLGLGQGLSMGVLNLAIVIPQVIVS 450
Query: 458 MGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPRSSAQKPRALP 505
+GSGPWDQLFGGGNSPAFA+GG++A AGGL+AIL IPRS AQKP ALP
Sbjct: 451 LGSGPWDQLFGGGNSPAFAIGGLAAFAGGLVAILGIPRSGAQKPMALP 498
|
Source: Hevea brasiliensis Species: Hevea brasiliensis Genus: Hevea Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225458976|ref|XP_002285568.1| PREDICTED: sucrose transport protein SUC4 [Vitis vinifera] gi|147802485|emb|CAN77414.1| hypothetical protein VITISV_000474 [Vitis vinifera] gi|302142125|emb|CBI19328.3| unnamed protein product [Vitis vinifera] gi|310877780|gb|ADP37121.1| sucrose transporter [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 769 bits (1986), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/502 (77%), Positives = 431/502 (85%), Gaps = 6/502 (1%)
Query: 1 MPQDERQRSKSRASTSRAVARPPARAKVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQE 60
+P RQR + RA P R +VPLR+LL+VASVA GIQFGWALQLSLLTPYVQE
Sbjct: 3 VPGGHRQRGRPRALIGE-----PVRPRVPLRRLLRVASVACGIQFGWALQLSLLTPYVQE 57
Query: 61 LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGL 120
LGIPHAW+SIIWLCGP+SGL VQPLVGH SDRC SRFGRRRPFIV GA SI VAVL+IG
Sbjct: 58 LGIPHAWSSIIWLCGPLSGLLVQPLVGHLSDRCNSRFGRRRPFIVAGATSIVVAVLIIGF 117
Query: 121 SADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANA 180
SADIG LLGD D RPRA+A FV GFW+LDVANN+TQGPCRALLADLT KDHRRTRVANA
Sbjct: 118 SADIGGLLGDGADRRPRAVATFVVGFWLLDVANNVTQGPCRALLADLTEKDHRRTRVANA 177
Query: 181 YFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISA 240
YFSLF+AVGN+LG+ATGS+SGWF+I FT TS+CN DCANLKSAF LD+IFIAITT IS
Sbjct: 178 YFSLFIAVGNVLGFATGSYSGWFRIFWFTSTSSCNADCANLKSAFLLDIIFIAITTYISI 237
Query: 241 SAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLG 300
+AA E+PL S +S SEE E S+ EAFLWELFGT RY SG+IWIIL VTALTW+G
Sbjct: 238 TAAQELPLSSSSRSTHISEEMAE-STHAQEAFLWELFGTLRYLSGSIWIILFVTALTWIG 296
Query: 301 WFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWG 360
WFPFLLFDTDWMGREIYGG+PNEGQNY TGVRMGALGLMLNSVVLGITSVLMEKLCRKWG
Sbjct: 297 WFPFLLFDTDWMGREIYGGKPNEGQNYNTGVRMGALGLMLNSVVLGITSVLMEKLCRKWG 356
Query: 361 AGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITY 420
AGF+WG+SNILM+LCFL MLIL V HMD+ GHDLPP+G+VIAALI+F+ILG PLAITY
Sbjct: 357 AGFVWGLSNILMSLCFLLMLILSAVVKHMDFLGHDLPPSGVVIAALIVFSILGIPLAITY 416
Query: 421 SVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGI 480
SVPYAL+S R ESLGLGQGLS+GVLNLAIVIPQ++VS+GSGPWDQLFGGGNSP+ AV +
Sbjct: 417 SVPYALISTRIESLGLGQGLSMGVLNLAIVIPQVIVSLGSGPWDQLFGGGNSPSLAVAAV 476
Query: 481 SALAGGLIAILAIPRSSAQKPR 502
+A A GL+AILAIPRSSA K R
Sbjct: 477 AAFASGLVAILAIPRSSADKSR 498
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|74476785|gb|ABA08443.1| sucrose transporter type 4 [Manihot esculenta] | Back alignment and taxonomy information |
|---|
Score = 769 bits (1985), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/494 (78%), Positives = 435/494 (88%), Gaps = 2/494 (0%)
Query: 12 RASTSRAVARPPARAKVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASII 71
+A + RA ARPP +VPLR+LL+V S+AGGIQFGWALQLSLLTPYVQELGIPHAWAS+I
Sbjct: 5 QAESHRARARPPVVRRVPLRQLLRVTSIAGGIQFGWALQLSLLTPYVQELGIPHAWASVI 64
Query: 72 WLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDR 131
WLCGP+SGL VQPLVG SDRC SRFGRRRPFI+ GAI I VAVL+IG SADIGWLLGDR
Sbjct: 65 WLCGPLSGLVVQPLVGPMSDRCASRFGRRRPFILAGAILIVVAVLIIGHSADIGWLLGDR 124
Query: 132 GDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNI 191
G+ RPRAI VFVFGFW+LDVANN TQGPCRALLADLTGKDHRRTRVANAYFSLFMA+GNI
Sbjct: 125 GNTRPRAIVVFVFGFWVLDVANNTTQGPCRALLADLTGKDHRRTRVANAYFSLFMAIGNI 184
Query: 192 LGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSH 251
LG+ATG+FS WFK+ PFT+T+ACNVDCANLKSAF+LD++F+ IT+ +S +AA E PLG
Sbjct: 185 LGFATGAFSNWFKVFPFTVTTACNVDCANLKSAFYLDIVFMVITSYLSITAAQESPLGLS 244
Query: 252 DQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDW 311
++S P +E+ +SS EAFLWELFGTFRYF +W IL+VTAL W+GWFPFLLFDTDW
Sbjct: 245 NRSTPLAEDVSVESS--QEAFLWELFGTFRYFPWPVWTILLVTALNWIGWFPFLLFDTDW 302
Query: 312 MGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNIL 371
MGREIYGG+PNEGQNY GVR G+ LMLNSV LGITSVLMEKLCRKWGAGFIWG+SNIL
Sbjct: 303 MGREIYGGKPNEGQNYNVGVRAGSFALMLNSVFLGITSVLMEKLCRKWGAGFIWGLSNIL 362
Query: 372 MALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRT 431
MALCFLAMLI YVA H+ Y GHDLPP+GIVI+A++IF +LG PLAITYSVPYAL+S R
Sbjct: 363 MALCFLAMLITSYVANHIGYLGHDLPPSGIVISAVVIFAVLGVPLAITYSVPYALISSRI 422
Query: 432 ESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAIL 491
E LGLGQGLS+GVLNLAIVIPQ++VS+GSGPWDQLFGGGNSPAFAVGG++ALAGGLIAIL
Sbjct: 423 EPLGLGQGLSMGVLNLAIVIPQVIVSLGSGPWDQLFGGGNSPAFAVGGLAALAGGLIAIL 482
Query: 492 AIPRSSAQKPRALP 505
IPRS QKPRALP
Sbjct: 483 GIPRSGTQKPRALP 496
|
Source: Manihot esculenta Species: Manihot esculenta Genus: Manihot Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|5882292|gb|AAD55269.1|AF182445_1 sucrose transporter [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 768 bits (1982), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/502 (77%), Positives = 430/502 (85%), Gaps = 6/502 (1%)
Query: 1 MPQDERQRSKSRASTSRAVARPPARAKVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQE 60
+P RQR + RA P R +VPLR+LL+VASVA GIQFGWALQLSLLTPYVQE
Sbjct: 3 VPGGHRQRGRPRALIGE-----PVRPRVPLRRLLRVASVACGIQFGWALQLSLLTPYVQE 57
Query: 61 LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGL 120
LGIPHAW+SIIWLCGP+SGL VQPLVGH SDRC SRFGRRRPFIV GA SI VAVL+IG
Sbjct: 58 LGIPHAWSSIIWLCGPLSGLLVQPLVGHLSDRCNSRFGRRRPFIVAGATSIVVAVLIIGF 117
Query: 121 SADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANA 180
S DIG LLGD D RPRA+A FV GFW+LDVANN+TQGPCRALLADLT KDHRRTRVANA
Sbjct: 118 STDIGGLLGDGADRRPRAVATFVVGFWLLDVANNVTQGPCRALLADLTEKDHRRTRVANA 177
Query: 181 YFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISA 240
YFSLF+AVGN+LG+ATGS+SGWF+I FT TS+CN DCANLKSAF LD+IFIAITT IS
Sbjct: 178 YFSLFIAVGNVLGFATGSYSGWFRIFWFTSTSSCNADCANLKSAFLLDIIFIAITTYISI 237
Query: 241 SAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLG 300
+AA E+PL S +S SEE E S+ EAFLWELFGT RY SG+IWIIL VTALTW+G
Sbjct: 238 TAAQELPLSSSSRSTHISEEMAE-STHAQEAFLWELFGTLRYLSGSIWIILFVTALTWIG 296
Query: 301 WFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWG 360
WFPFLLFDTDWMGREIYGG+PNEGQNY TGVRMGALGLMLNSVVLGITSVLMEKLCRKWG
Sbjct: 297 WFPFLLFDTDWMGREIYGGKPNEGQNYNTGVRMGALGLMLNSVVLGITSVLMEKLCRKWG 356
Query: 361 AGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITY 420
AGF+WG+SNILM+LCFL MLIL V HMD+ GHDLPP+G+VIAALI+F+ILG PLAITY
Sbjct: 357 AGFVWGLSNILMSLCFLLMLILSAVVKHMDFLGHDLPPSGVVIAALIVFSILGIPLAITY 416
Query: 421 SVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGI 480
SVPYAL+S R ESLGLGQGLS+GVLNLAIVIPQ++VS+GSGPWDQLFGGGNSP+ AV +
Sbjct: 417 SVPYALISTRIESLGLGQGLSMGVLNLAIVIPQVIVSLGSGPWDQLFGGGNSPSLAVAAV 476
Query: 481 SALAGGLIAILAIPRSSAQKPR 502
+A A GL+AILAIPRSSA K R
Sbjct: 477 AAFASGLVAILAIPRSSADKSR 498
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|6434829|gb|AAF08329.1|AF021808_1 putative sucrose transporter [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 764 bits (1972), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/502 (77%), Positives = 429/502 (85%), Gaps = 6/502 (1%)
Query: 1 MPQDERQRSKSRASTSRAVARPPARAKVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQE 60
+P RQR + RA P R +VPLR+LL+VASVA GIQFGWALQLSLLTPYVQE
Sbjct: 3 VPGGHRQRGRPRALIGE-----PVRPRVPLRRLLRVASVACGIQFGWALQLSLLTPYVQE 57
Query: 61 LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGL 120
LGIPHAW+SIIWLCGP+SGL VQPLVGH SDRC SRFGRRRPFIV GA SI VAVL+IG
Sbjct: 58 LGIPHAWSSIIWLCGPLSGLLVQPLVGHLSDRCNSRFGRRRPFIVAGATSIVVAVLIIGF 117
Query: 121 SADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANA 180
SADIG LLGD D RPRA+A FV GFW+LDVANN+TQGPCRALLADLT KDHRRTRVANA
Sbjct: 118 SADIGGLLGDGADRRPRAVATFVVGFWLLDVANNVTQGPCRALLADLTEKDHRRTRVANA 177
Query: 181 YFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISA 240
YFSLF+AVGN+LG+ATGS+SGWF+I FT TS+CN DCANLKSAF LD+IFIAITT IS
Sbjct: 178 YFSLFIAVGNVLGFATGSYSGWFRIFWFTSTSSCNADCANLKSAFLLDIIFIAITTYISI 237
Query: 241 SAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLG 300
+AA E+PL S +S SEE E S+ EAFLWELFGT RY SG+IWIIL VTALTW+G
Sbjct: 238 TAAQELPLSSSSRSTHISEEMAE-STHAQEAFLWELFGTLRYLSGSIWIILFVTALTWIG 296
Query: 301 WFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWG 360
PFLLFDTDWMGREIYGG+PNEGQNY TGVRMGALGLMLNSVVLGITSVLMEKLCRKWG
Sbjct: 297 LLPFLLFDTDWMGREIYGGKPNEGQNYNTGVRMGALGLMLNSVVLGITSVLMEKLCRKWG 356
Query: 361 AGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITY 420
AGF+WG+SNILM+LCFL MLIL V HMD+ GHDLPP+G+VIAALI+F+ILG PLAITY
Sbjct: 357 AGFVWGLSNILMSLCFLLMLILSAVVKHMDFLGHDLPPSGVVIAALIVFSILGIPLAITY 416
Query: 421 SVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGI 480
SVPYAL+S R ESLGLGQGLS+GVLNLAIVIPQ++VS+GSGPWDQLFGGGNSP+ AV +
Sbjct: 417 SVPYALISTRIESLGLGQGLSMGVLNLAIVIPQVIVSLGSGPWDQLFGGGNSPSLAVAAV 476
Query: 481 SALAGGLIAILAIPRSSAQKPR 502
+A A GL+AILAIPRSSA K R
Sbjct: 477 AAFASGLVAILAIPRSSADKSR 498
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|350538461|ref|NP_001234344.1| sucrose transporter [Solanum lycopersicum] gi|9957218|gb|AAG09270.1|AF176950_1 sucrose transporter [Solanum lycopersicum] | Back alignment and taxonomy information |
|---|
Score = 764 bits (1972), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/502 (73%), Positives = 428/502 (85%), Gaps = 5/502 (0%)
Query: 1 MPQDERQRSKSRASTSRAVARPPARAKVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQE 60
MP+ ER R++ +R R P + +VPLR LL+VASVAGGIQFGWALQLSLLTPYVQE
Sbjct: 1 MPEIERHRTRH----NRPAIREPVKPRVPLRLLLRVASVAGGIQFGWALQLSLLTPYVQE 56
Query: 61 LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGL 120
LGIPHAWASIIWLCGP+SGL VQPLVGH SD+CTSRFGRRRPFIV GA SI +AVL+IG
Sbjct: 57 LGIPHAWASIIWLCGPLSGLLVQPLVGHMSDKCTSRFGRRRPFIVAGAASIMIAVLIIGF 116
Query: 121 SADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANA 180
SADIGWLLGDRG+ + RAIA FV GFW+LDVANNMTQGPCRALLADLT KDHRRTRVANA
Sbjct: 117 SADIGWLLGDRGEIKVRAIAAFVVGFWLLDVANNMTQGPCRALLADLTQKDHRRTRVANA 176
Query: 181 YFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISA 240
YFSLFMA+GNILG+ATGS+SGW+KI FTL +AC ++CANLK+AF LD+IFIA TTCIS
Sbjct: 177 YFSLFMAIGNILGFATGSYSGWYKIFLFTLNTACTINCANLKAAFILDIIFIATTTCISI 236
Query: 241 SAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLG 300
SAA+E PL S+ EE E S EAFLWELFG F+YF G +W+IL+VTALTW+G
Sbjct: 237 SAANEQPLDPSRGSSHTGEEIDESSHGQEEAFLWELFGIFKYFPGVVWVILLVTALTWIG 296
Query: 301 WFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWG 360
WFPFLLFDTDW GREIYGGEPN+G+NY+ GVRMG+LGLMLNSV+LG+TS+ MEKLCRKWG
Sbjct: 297 WFPFLLFDTDWFGREIYGGEPNDGKNYSAGVRMGSLGLMLNSVLLGLTSLFMEKLCRKWG 356
Query: 361 AGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITY 420
AGF WG+SN++M+LCF+AMLI+ V ++D G LPP+GIVIAAL++F+ILG PLAITY
Sbjct: 357 AGFTWGVSNVVMSLCFIAMLIITAVRSNIDI-GQGLPPDGIVIAALVVFSILGIPLAITY 415
Query: 421 SVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGI 480
SVPYALVS R E+LGLGQGLS+GVLNLAIV PQIVVS+GSGPWD+LFGGGNSPAF V +
Sbjct: 416 SVPYALVSSRIEALGLGQGLSMGVLNLAIVFPQIVVSLGSGPWDELFGGGNSPAFVVAAL 475
Query: 481 SALAGGLIAILAIPRSSAQKPR 502
SA A GLIAILAIPR+ ++P+
Sbjct: 476 SAFAAGLIAILAIPRTRVERPK 497
|
Source: Solanum lycopersicum Species: Solanum lycopersicum Genus: Solanum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 505 | ||||||
| TAIR|locus:2024422 | 510 | SUT4 "AT1G09960" [Arabidopsis | 0.928 | 0.919 | 0.691 | 1.1e-179 | |
| TAIR|locus:2064253 | 492 | SUC8 "AT2G14670" [Arabidopsis | 0.865 | 0.888 | 0.527 | 2.7e-123 | |
| TAIR|locus:2028947 | 491 | SUC7 "AT1G66570" [Arabidopsis | 0.865 | 0.890 | 0.522 | 3.1e-122 | |
| TAIR|locus:2158352 | 492 | SUC6 "AT5G43610" [Arabidopsis | 0.865 | 0.888 | 0.520 | 8.3e-122 | |
| TAIR|locus:2199633 | 512 | SUC2 "AT1G22710" [Arabidopsis | 0.869 | 0.857 | 0.519 | 3.6e-121 | |
| TAIR|locus:2016069 | 513 | SUC1 "AT1G71880" [Arabidopsis | 0.926 | 0.912 | 0.501 | 1.5e-120 | |
| TAIR|locus:2160732 | 491 | SUC9 "AT5G06170" [Arabidopsis | 0.865 | 0.890 | 0.513 | 3.2e-120 | |
| TAIR|locus:2016074 | 512 | SUC5 "AT1G71890" [Arabidopsis | 0.871 | 0.859 | 0.492 | 9.4e-114 | |
| TAIR|locus:2056675 | 594 | SUT2 "AT2G02860" [Arabidopsis | 0.429 | 0.365 | 0.535 | 1.3e-109 | |
| UNIPROTKB|Q10R54 | 538 | SUT1 "Sucrose transport protei | 0.926 | 0.869 | 0.426 | 8.2e-99 |
| TAIR|locus:2024422 SUT4 "AT1G09960" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1744 (619.0 bits), Expect = 1.1e-179, P = 1.1e-179
Identities = 329/476 (69%), Positives = 373/476 (78%)
Query: 31 RKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFS 90
R LL+VASVA GIQFGWALQLSLLTPYVQELGIPHAWAS+IWLCGP+SGLFVQPLVGH S
Sbjct: 41 RVLLRVASVACGIQFGWALQLSLLTPYVQELGIPHAWASVIWLCGPLSGLFVQPLVGHSS 100
Query: 91 DRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDR-GDFRPRAIAVFVFGFWIL 149
DRCTS++GRRRPFIV GA++I+++V++IG +ADIGW GDR G +PRAI FV GFWIL
Sbjct: 101 DRCTSKYGRRRPFIVAGAVAISISVMVIGHAADIGWAFGDREGKIKPRAIVAFVLGFWIL 160
Query: 150 DVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFT 209
DVANNMTQGPCRALLADLT D+RRTRVAN YFSLFMAVGN+LGYATGS++GW+KI FT
Sbjct: 161 DVANNMTQGPCRALLADLTENDNRRTRVANGYFSLFMAVGNVLGYATGSYNGWYKIFTFT 220
Query: 210 LTSACNVDCANLKSAFFLDVXXXXXXXXXXXXXXHEVPLGSHDQSAPFSEEGHEQSSDVH 269
T ACNV+CANLKSAF++DV HEVPL S + E H Q+S
Sbjct: 221 KTVACNVECANLKSAFYIDVVFIAITTILSVSAAHEVPLAS------LASEAHGQTSGTD 274
Query: 270 EAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYAT 329
EAFL E+FGTFRYF G +WIIL+VTALTW+GWFPF+LFDTDWMGREIYGGEPN G +Y+
Sbjct: 275 EAFLSEIFGTFRYFPGNVWIILLVTALTWIGWFPFILFDTDWMGREIYGGEPNIGTSYSA 334
Query: 330 GVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHM 389
GV MGALGLMLNSV LGITSVLMEKLCRKWGAGF+WGISNILMA+CFL M+I +VA H+
Sbjct: 335 GVSMGALGLMLNSVFLGITSVLMEKLCRKWGAGFVWGISNILMAICFLGMIITSFVASHL 394
Query: 390 DYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESXXXXXXXXXXXXXXAI 449
Y GH+ PP IV AA++IFTILG PLAITYSVPYAL+SIR ES AI
Sbjct: 395 GYIGHEQPPASIVFAAVLIFTILGIPLAITYSVPYALISIRIESLGLGQGLSLGVLNLAI 454
Query: 450 VIPQIVVSMGSGPWDQLFGGGNSPAFAVXXXXXXXXXXXXXXXXPRSSAQKPRALP 505
VIPQ++VS+GSGPWDQLFGGGNSPA AV PR+ QKP LP
Sbjct: 455 VIPQVIVSVGSGPWDQLFGGGNSPALAVGAATGFIGGIVAILALPRTRIQKPIPLP 510
|
|
| TAIR|locus:2064253 SUC8 "AT2G14670" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1212 (431.7 bits), Expect = 2.7e-123, P = 2.7e-123
Identities = 242/459 (52%), Positives = 310/459 (67%)
Query: 29 PLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGH 88
PLRK++ VAS+A GIQFGWALQLSLLTPYVQ LG+PH W+S IWLCGPVSGL VQP VG+
Sbjct: 29 PLRKMISVASIAAGIQFGWALQLSLLTPYVQLLGVPHKWSSFIWLCGPVSGLLVQPSVGY 88
Query: 89 FSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGD--FRPRAIAVFVFGF 146
FSDRCTSRFGRRRPFI GA+ +AVAV+LIG +AD G +GD+ D + RA+ +F GF
Sbjct: 89 FSDRCTSRFGRRRPFIATGALLVAVAVVLIGYAADFGHSMGDKIDKPVKMRAVVIFALGF 148
Query: 147 WILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKIL 206
WILDVANN QGPCRA L DL D ++TR ANA+FS FMAVGN+LGYA GS++ +KI
Sbjct: 149 WILDVANNTLQGPCRAFLGDLAAGDAKKTRTANAFFSFFMAVGNVLGYAAGSYTNLYKIF 208
Query: 207 PFTLTSACNVDCANLKSAFFLDVXXXXXXXXXXXXXXHEVPLGSHDQSAPFSEEGHEQSS 266
PFT+T AC++ CANLKS FFL + + Q +P ++ +E++
Sbjct: 209 PFTMTKACDIYCANLKSCFFLSITLLLVVTIIALWYVED------KQWSPKADSDNEKTP 262
Query: 267 DVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQN 326
F E+FG F+ +W++LIVTAL W+ WFPFLL+DTDWMGRE+YGG+ ++G +
Sbjct: 263 -----FFGEIFGAFKVMKRPMWMLLIVTALNWIAWFPFLLYDTDWMGREVYGGD-SKGDD 316
Query: 327 -----YATGVRMGALGLMLNSVVLGITSVLMEKLCRK-WGAGFIWGISNILMALCF-LAM 379
Y G+ +GALGLMLNS+VLGI S+ +E + +K GA +WG NI++A+C + +
Sbjct: 317 KMKKLYNQGIHVGALGLMLNSIVLGIVSLGIEGISKKIGGAKRLWGAVNIILAVCLAMTV 376
Query: 380 LILYYVAIHMDYRGH-DLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESXXXXX 438
L+ H G LP +GI AL +F +LG PLAIT+S+P+AL SI + S
Sbjct: 377 LVTKKAEEHRRIAGPMALPTDGIRAGALTLFALLGIPLAITFSIPFALASIISSSSGAGQ 436
Query: 439 XXXXXXXXXAIVIPQIVVSMGSGPWDQLFGGGNSPAFAV 477
AIVIPQ++VS G GP D LFGGGN P F V
Sbjct: 437 GLSLGVLNMAIVIPQMIVSFGVGPIDALFGGGNLPRFVV 475
|
|
| TAIR|locus:2028947 SUC7 "AT1G66570" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1202 (428.2 bits), Expect = 3.1e-122, P = 3.1e-122
Identities = 240/459 (52%), Positives = 308/459 (67%)
Query: 29 PLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGH 88
PLRK++ VAS+A GIQFGWALQLSLLTPYVQ LG+PH W S IWLCGPVSGL VQP VG+
Sbjct: 28 PLRKMISVASIAAGIQFGWALQLSLLTPYVQLLGVPHKWPSFIWLCGPVSGLLVQPSVGY 87
Query: 89 FSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGD--FRPRAIAVFVFGF 146
FSDRCTSRFGRRRPFI GA+ +AV+V+LIG +AD G +GD+ D + RA+ +F GF
Sbjct: 88 FSDRCTSRFGRRRPFIATGALLVAVSVVLIGYAADFGHSMGDKIDKPVKMRAVVIFALGF 147
Query: 147 WILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKIL 206
WILDVANN QGPCRA L DL D ++TR ANA+FS FMAVGN+LGYA GS++ +KI
Sbjct: 148 WILDVANNTLQGPCRAFLGDLAAGDAQKTRTANAFFSFFMAVGNVLGYAAGSYTNLYKIF 207
Query: 207 PFTLTSACNVDCANLKSAFFLDVXXXXXXXXXXXXXXHEVPLGSHDQSAPFSEEGHEQSS 266
PFT+T AC++ CANLKS FFL + + Q +P ++ +E++
Sbjct: 208 PFTMTKACDIYCANLKSCFFLSITLLLVVTIIALWYVED------KQWSPKADSDNEKTP 261
Query: 267 DVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQN 326
F E+FG F+ +W++LIVTAL W+ WFPFLL+DTDWMGRE+YGG+ ++G +
Sbjct: 262 -----FFGEIFGAFKVMKRPMWMLLIVTALNWIAWFPFLLYDTDWMGREVYGGD-SKGDD 315
Query: 327 -----YATGVRMGALGLMLNSVVLGITSVLMEKLCRKWG-AGFIWGISNILMALCF-LAM 379
Y G+ +GALGLMLNS+VLG+ S+ +E + RK G A +WG NI++A+C + +
Sbjct: 316 KMKKLYNQGIHVGALGLMLNSIVLGVMSLGIEGISRKMGGAKRLWGAVNIILAVCLAMTV 375
Query: 380 LILYYVAIHMDYRGH-DLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESXXXXX 438
L+ H G LP +GI AL +F +LG PLAIT+S+P+AL SI + S
Sbjct: 376 LVTKKAEEHRRIAGPMALPTDGIRAGALTLFALLGIPLAITFSIPFALASIISSSSGAGQ 435
Query: 439 XXXXXXXXXAIVIPQIVVSMGSGPWDQLFGGGNSPAFAV 477
AIVIPQ++VS G GP D LFG GN P F V
Sbjct: 436 RLSLGVLNMAIVIPQMIVSFGVGPIDALFGDGNLPGFVV 474
|
|
| TAIR|locus:2158352 SUC6 "AT5G43610" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1198 (426.8 bits), Expect = 8.3e-122, P = 8.3e-122
Identities = 239/459 (52%), Positives = 306/459 (66%)
Query: 29 PLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGH 88
P+RK++ VAS+A GIQFGWALQLSLLTPYVQ LG+PH W+S IWLCGPVSGL VQP VG+
Sbjct: 29 PMRKMISVASIAAGIQFGWALQLSLLTPYVQLLGVPHKWSSFIWLCGPVSGLLVQPSVGY 88
Query: 89 FSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGD--FRPRAIAVFVFGF 146
FSDRC SRFGRRRPFI GA+ +AVAV+LIG +AD G +GD+ D + RA+ +F GF
Sbjct: 89 FSDRCKSRFGRRRPFIAMGALLVAVAVVLIGYAADFGHSMGDKVDEPVKMRAVVIFALGF 148
Query: 147 WILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKIL 206
WILDVANN QGPCRA L DL D ++TR ANA+FS FMAVGN+LGYA GS++ +KI
Sbjct: 149 WILDVANNTLQGPCRAFLGDLAAGDAKKTRTANAFFSFFMAVGNVLGYAAGSYTNLYKIF 208
Query: 207 PFTLTSACNVDCANLKSAFFLDVXXXXXXXXXXXXXXHEVPLGSHDQSAPFSEEGHEQSS 266
PFT+T AC++ CANLKS FFL + + Q +P ++ +E++
Sbjct: 209 PFTMTKACDIYCANLKSCFFLSITLLLVVTIIALWYVED------KQWSPKADSDNEKTP 262
Query: 267 DVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQN 326
F E+FG F+ +W++LIVTAL W+ WFPFLL+DTDWMGRE+YGG+ ++G +
Sbjct: 263 -----FFGEIFGAFKVMKRPMWMLLIVTALNWIAWFPFLLYDTDWMGREVYGGD-SKGDD 316
Query: 327 -----YATGVRMGALGLMLNSVVLGITSVLMEKLCRKWG-AGFIWGISNILMALCF-LAM 379
Y G+ +G LGLMLNS+VLG S+ +E + RK G A +WG NI++A+C + +
Sbjct: 317 KMKKLYNQGIHVGGLGLMLNSIVLGFMSLGIEGISRKMGGAKRLWGAVNIILAVCLAMTV 376
Query: 380 LILYYVAIHMDYRGH-DLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESXXXXX 438
L+ H G LP +GI AL +F +LG PLAIT+S+P+AL SI + S
Sbjct: 377 LVTKKAEEHRRIAGPMALPTDGIRAGALTLFALLGIPLAITFSIPFALASIISSSSGAGQ 436
Query: 439 XXXXXXXXXAIVIPQIVVSMGSGPWDQLFGGGNSPAFAV 477
IVIPQ+VVS G GP D LFGGGN P F V
Sbjct: 437 GLSLGVLNMTIVIPQMVVSFGVGPIDALFGGGNLPGFVV 475
|
|
| TAIR|locus:2199633 SUC2 "AT1G22710" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1192 (424.7 bits), Expect = 3.6e-121, P = 3.6e-121
Identities = 239/460 (51%), Positives = 313/460 (68%)
Query: 30 LRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHF 89
LRK++ V+S+A G+QFGWALQLSLLTPYVQ LGIPH WAS+IWLCGP+SG+ VQP+VG+
Sbjct: 29 LRKIISVSSIAAGVQFGWALQLSLLTPYVQLLGIPHKWASLIWLCGPISGMLVQPIVGYH 88
Query: 90 SDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRP--RAIAVFVFGFW 147
SDRCTSRFGRRRPFIV GA + VAV LIG +ADIG +GD+ D P RAIA+F GFW
Sbjct: 89 SDRCTSRFGRRRPFIVAGAGLVTVAVFLIGYAADIGHSMGDQLDKPPKTRAIAIFALGFW 148
Query: 148 ILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILP 207
ILDVANN QGPCRA LADL+ + ++TR ANA+FS FMAVGN+LGYA GS+ +K++P
Sbjct: 149 ILDVANNTLQGPCRAFLADLSAGNAKKTRTANAFFSFFMAVGNVLGYAAGSYRNLYKVVP 208
Query: 208 FTLTSACNVDCANLKSAFFLDVXXXXXXXXXXXXXXHEVPLGSHDQSAPFSEEGHEQSSD 267
FT+T +C++ CANLK+ FFL + E P + + +A +G ++S+
Sbjct: 209 FTMTESCDLYCANLKTCFFLSITLLLIVTFVSLCYVKEKPW-TPEPTA----DG--KASN 261
Query: 268 VHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQN- 326
V F E+FG F+ +W++LIVTAL W+ WFPFLLFDTDWMGRE+YGG +
Sbjct: 262 V--PFFGEIFGAFKELKRPMWMLLIVTALNWIAWFPFLLFDTDWMGREVYGGNSDATATA 319
Query: 327 -----YATGVRMGALGLMLNSVVLGITSVLMEKLCRKWG-AGFIWGISNILMALCF-LAM 379
Y GVR GALGLMLN++VLG S+ +E + RK G A +WGI N ++A+C + +
Sbjct: 320 ASKKLYNDGVRAGALGLMLNAIVLGFMSLGVEWIGRKLGGAKRLWGIVNFILAICLAMTV 379
Query: 380 LILYYVAIHM-DYRGHDL-PPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESXXXX 437
++ H D+ G PP + AL +F ILG P AIT+S+P+AL SI + +
Sbjct: 380 VVTKQAENHRRDHGGAKTGPPGNVTAGALTLFAILGIPQAITFSIPFALASIFSTNSGAG 439
Query: 438 XXXXXXXXXXAIVIPQIVVSMGSGPWDQLFGGGNSPAFAV 477
AIV+PQ+V+S+G GP+D+LFGGGN PAF +
Sbjct: 440 QGLSLGVLNLAIVVPQMVISVGGGPFDELFGGGNIPAFVL 479
|
|
| TAIR|locus:2016069 SUC1 "AT1G71880" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1186 (422.6 bits), Expect = 1.5e-120, P = 1.5e-120
Identities = 243/485 (50%), Positives = 309/485 (63%)
Query: 29 PLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGH 88
PLRK++ VAS+A G+QFGWALQLSLLTPYVQ LGIPH W+S+IWLCGPVSG+ VQP+VG
Sbjct: 29 PLRKIISVASIAAGVQFGWALQLSLLTPYVQLLGIPHKWSSLIWLCGPVSGMIVQPIVGF 88
Query: 89 FSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGD--FRPRAIAVFVFGF 146
SDRC S+FGRRRPFI GA +AVAV LIG +AD G+ +GD+ + + RAI +F GF
Sbjct: 89 HSDRCRSKFGRRRPFIATGAALVAVAVFLIGYAADFGYKMGDKLEEKVKVRAIGIFALGF 148
Query: 147 WILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKIL 206
WILDVANN QGPCRA LADL D +RTRVANA+FS FMAVGN+LGYA GS++ K+
Sbjct: 149 WILDVANNTLQGPCRAFLADLAAGDAKRTRVANAFFSFFMAVGNVLGYAAGSYTNLHKMF 208
Query: 207 PFTLTSACNVDCANLKSAFFLDVXXXXXXXXXXXXXXHEVPLGSHDQSAPFSEEGHEQSS 266
PFT+T AC++ CANLK+ FFL + ++ P + + E++S
Sbjct: 209 PFTMTKACDIYCANLKTCFFLSITLLLIVTVTSLWYVND----KQWSPPPRNADDDEKTS 264
Query: 267 DVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEP--NEG 324
V E+FG F+ +W++LIVTAL W+ WFPFLLFDTDWMGRE++GG+ NE
Sbjct: 265 SV--PLFGEIFGAFKVMKRPMWMLLIVTALNWIAWFPFLLFDTDWMGREVFGGDSDGNER 322
Query: 325 QN--YATGVRMGALGLMLNSVVLGITSVLMEKLCRKWG-AGFIWGISNILMALCFLAMLI 381
Y+ GV+ GA+GLM NS+VLG S+ +E + RK G A +WGI N ++A LAM +
Sbjct: 323 SKKLYSLGVQSGAMGLMFNSIVLGFMSLGVEWIGRKLGGAKRLWGIVNFILA-AGLAMTV 381
Query: 382 LY--YVAIHMDYRGHDLPPNGIVIA-ALIIFTILGGPLAITYSVPYALVSIRTESXXXXX 438
L + H G P+ V A AL +F +LG PLAIT+S P+AL SI +
Sbjct: 382 LVTKFAEDHRKTAGDLAGPSASVKAGALSLFAVLGIPLAITFSTPFALASIFSSCSGAGQ 441
Query: 439 XXXXXXXXXAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVXXXXXXXXXXXXXXXXPRSSA 498
AIVIPQ++VS+G GP+D LFGGGN PAF V P
Sbjct: 442 GLSLGVLNLAIVIPQMIVSLGGGPFDALFGGGNLPAFIVAAIAAAISGVLALTVLPSPPP 501
Query: 499 QKPRA 503
P+A
Sbjct: 502 DAPKA 506
|
|
| TAIR|locus:2160732 SUC9 "AT5G06170" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1183 (421.5 bits), Expect = 3.2e-120, P = 3.2e-120
Identities = 235/458 (51%), Positives = 304/458 (66%)
Query: 29 PLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGH 88
PLRK++ VAS+A GIQFGWALQLSLLTPYVQ LG+PH W+S IWLCGP+SGL VQP VG+
Sbjct: 29 PLRKMISVASIAAGIQFGWALQLSLLTPYVQLLGVPHKWSSFIWLCGPISGLLVQPTVGY 88
Query: 89 FSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGD--FRPRAIAVFVFGF 146
FSDRC SRFGRRRPFI GA+ +A+AV+LIG +AD G +GD+ D + RA+ FV GF
Sbjct: 89 FSDRCKSRFGRRRPFIATGALLVALAVILIGFAADFGHTMGDKLDEAVKIRAVGFFVVGF 148
Query: 147 WILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKIL 206
WILDVANN QGPCRA L DL D ++TR ANA FS FMAVGN+LGYA GS++ KI
Sbjct: 149 WILDVANNTLQGPCRAFLGDLAAGDAKKTRTANAIFSFFMAVGNVLGYAAGSYTNLHKIF 208
Query: 207 PFTLTSACNVDCANLKSAFFLDVXXXXXXXXXXXXXXHEVPLGSHDQSAPFSEEGHEQSS 266
PFT+T AC++ CANLKS F + + + Q +P ++ +E++
Sbjct: 209 PFTVTKACDIYCANLKSCFIISITLLIVLTIIALWYVED------KQWSPNADSDNEKTP 262
Query: 267 DVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQN 326
F E+FG F+ +W++L VTAL W+ WFPFLL+DTDWMGRE+YGG+ + G +
Sbjct: 263 -----FFGEIFGAFKVMKRPMWMLLAVTALNWIAWFPFLLYDTDWMGREVYGGD-SAGDD 316
Query: 327 -----YATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCF-LAML 380
Y G+++G+LGLMLNS+VLG+ S+++ + +K GA +WG NI++A+C + +L
Sbjct: 317 KMKKLYNHGIQVGSLGLMLNSIVLGVMSLVIGVISKKIGAKRLWGAVNIILAVCLAMTVL 376
Query: 381 ILYYVAIHMDYRGH-DLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESXXXXXX 439
+ H G LP N I AL +F ILG PLAIT+S+P+AL SI + S
Sbjct: 377 VTKKAEEHRKIAGRMALPTNAIRDGALSLFAILGIPLAITFSIPFALASIISSSSGAGQG 436
Query: 440 XXXXXXXXAIVIPQIVVSMGSGPWDQLFGGGNSPAFAV 477
AIVIPQ++VS G GP D LFGGGN P F V
Sbjct: 437 LSLGVLNMAIVIPQMIVSFGVGPIDALFGGGNLPGFVV 474
|
|
| TAIR|locus:2016074 SUC5 "AT1G71890" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1122 (400.0 bits), Expect = 9.4e-114, P = 9.4e-114
Identities = 226/459 (49%), Positives = 296/459 (64%)
Query: 29 PLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGH 88
PLRK++ VAS+A G+QFGWALQLSLLTPY+Q LGIPH W+S +WLCGP+SG+ VQP+VG+
Sbjct: 30 PLRKIISVASIAAGVQFGWALQLSLLTPYIQLLGIPHKWSSYMWLCGPISGMIVQPIVGY 89
Query: 89 FSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDR--GDFRPRAIAVFVFGF 146
SDRC SRFGRRRPFI G +AV+V LIG +AD+G GD+ R RAI +F+ GF
Sbjct: 90 HSDRCESRFGRRRPFIAAGVALVAVSVFLIGFAADMGHSFGDKLENKVRTRAIIIFLTGF 149
Query: 147 WILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKIL 206
W LDVANN QGPCRA LADL D ++TRVANA FS FMAVGN+LGYA GS++ K+
Sbjct: 150 WFLDVANNTLQGPCRAFLADLAAGDAKKTRVANACFSFFMAVGNVLGYAAGSYTNLHKMF 209
Query: 207 PFTLTSACNVDCANLKSAFFLDVXXXXXXXXXXXXXXHEVPLGSHDQSAPFSEEGHEQSS 266
PFT+T AC++ CANLK+ FFL + + Q +P + E++S
Sbjct: 210 PFTMTKACDIYCANLKTCFFLSITLLLIVTFSSLWYVKD------KQWSPPQGDKEEKTS 263
Query: 267 DVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQN 326
+ F E+FG R+ + ++LIVT + W+ WFPF+L+DTDWMGRE+YGG + +
Sbjct: 264 SLF--FFGEIFGAVRHMKRPMVMLLIVTVINWIAWFPFILYDTDWMGREVYGGNSDGDER 321
Query: 327 ----YATGVRMGALGLMLNSVVLGITSVLMEKLCRKWG-AGFIWGISNILMALCFLAMLI 381
Y GV+ GALGLM NS++LG S+ +E + RK G A +WG N ++A+ LAM +
Sbjct: 322 SKKLYDQGVQAGALGLMFNSILLGFVSLGVESIGRKMGGAKRLWGCVNFILAIG-LAMTV 380
Query: 382 LYYVAI--HMDYRGHDL-PPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESXXXXX 438
L + H + G P +GI +FT+LG PLAITYS+P+AL SI + +
Sbjct: 381 LVTKSAEHHREIAGPLAGPSSGIKAGVFSLFTVLGIPLAITYSIPFALASIFSTNSGAGQ 440
Query: 439 XXXXXXXXXAIVIPQIVVSMGSGPWDQLFGGGNSPAFAV 477
AI IPQ++VS SGP D FGGGN P+F V
Sbjct: 441 GLSLGVLNIAICIPQMIVSFSSGPLDAQFGGGNLPSFVV 479
|
|
| TAIR|locus:2056675 SUT2 "AT2G02860" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 619 (223.0 bits), Expect = 1.3e-109, Sum P(2) = 1.3e-109
Identities = 121/226 (53%), Positives = 155/226 (68%)
Query: 33 LLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDR 92
L+ +VA G+QFGWALQLSLLTPY+Q LGI HA++S IWLCGP++GL VQP VG +SD+
Sbjct: 63 LVLSCTVAAGVQFGWALQLSLLTPYIQTLGISHAFSSFIWLCGPITGLVVQPFVGIWSDK 122
Query: 93 CTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDF-------RPRAIAVFVFG 145
CTS++GRRRPFI+ G+ I++AV++IG SADIG+LLGD + R RA VF+ G
Sbjct: 123 CTSKYGRRRPFILVGSFMISIAVIIIGFSADIGYLLGDSKEHCSTFKGTRTRAAVVFIIG 182
Query: 146 FWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKI 205
FW+LD+ANN QGP RALLADL+G D R T ANA F L+MA+GNILG++ G+ W +
Sbjct: 183 FWLLDLANNTVQGPARALLADLSGPDQRNT--ANAVFCLWMAIGNILGFSAGASGKWQEW 240
Query: 206 LPFTLTSACNVDCANLKSAFFLDVXXXXXXXXXXXXXXHEVPLGSH 251
PF + AC C NLK+AF L V E+P S+
Sbjct: 241 FPFLTSRACCAACGNLKAAFLLAVVFLTICTLVTIYFAKEIPFTSN 286
|
|
| UNIPROTKB|Q10R54 SUT1 "Sucrose transport protein SUT1" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 981 (350.4 bits), Expect = 8.2e-99, P = 8.2e-99
Identities = 209/490 (42%), Positives = 289/490 (58%)
Query: 30 LRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHF 89
L +L+ VAGG+Q+GWALQLSLLTPYVQ LG+ HA S +WLCGP++G+ VQP VG +
Sbjct: 50 LGRLILSGMVAGGVQYGWALQLSLLTPYVQTLGLSHALTSFMWLCGPIAGMVVQPCVGLY 109
Query: 90 SDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGD-------FRPRAIAVF 142
SDRCTS++GRRRP+I+ G + I +AV++IG SADIG+ +GD + R A V+
Sbjct: 110 SDRCTSKWGRRRPYILTGCVLICLAVVVIGFSADIGYAMGDTKEDCSVYHGSRWHAAIVY 169
Query: 143 VFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGW 202
V GFW+LD +NN QGP RAL+ADL+G+ T AN+ F +MA+GNILGY++GS + W
Sbjct: 170 VLGFWLLDFSNNTVQGPARALMADLSGRHGPGT--ANSIFCSWMAMGNILGYSSGSTNNW 227
Query: 203 FKILPFTLTSACNVDCANLKSAFFLDVXXXXXXXXXXXXXXHEVPLGSHDQSAPFSEEGH 262
K PF T AC CANLK AF + V EVP + A + +
Sbjct: 228 HKWFPFLKTRACCEACANLKGAFLVAVIFLSLCLVITLIFAKEVPFKGN---AALPTKSN 284
Query: 263 EQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPN 322
E + L L G FR + +LIVT LTWL WFPF+L+DTDWMGREIY G+P
Sbjct: 285 EPAEPEGTGPLAVLKG-FRNLPTGMPSVLIVTGLTWLSWFPFILYDTDWMGREIYHGDPK 343
Query: 323 ----EGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLA 378
+ + + GVR GA GL+LNS+VLG +S L+E +CRK G +W SN L+ + A
Sbjct: 344 GTDPQIEAFNQGVRAGAFGLLLNSIVLGFSSFLIEPMCRKVGPRVVWVTSNFLVCIAMAA 403
Query: 379 MLILYYVAIHMDYRGHD----LPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESX 434
++ + ++ D+ G I L++F LG PLA+ YSVP+A+ + +
Sbjct: 404 TALISFWSLK-DFHGTVQKAITADKSIKAVCLVLFAFLGVPLAVLYSVPFAVTAQLAATR 462
Query: 435 XXXXXXXXXXXXXAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVXXXXXXXXXXXXXXXXP 494
+IVIPQ+V+++G+GPWD+LFG GN PAF + P
Sbjct: 463 GGGQGLCTGVLNISIVIPQVVIALGAGPWDELFGKGNIPAFGLASGFALIGGVAGIFLLP 522
Query: 495 RSSAQKPRAL 504
+ S ++ R++
Sbjct: 523 KISKRQFRSV 532
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9FE59 | SUC4_ARATH | No assigned EC number | 0.7285 | 0.9821 | 0.9725 | yes | no |
| Q03411 | SUT_SPIOL | No assigned EC number | 0.5465 | 0.9346 | 0.8990 | N/A | no |
| A2ZN77 | SUT2_ORYSI | No assigned EC number | 0.6563 | 0.9247 | 0.9321 | N/A | no |
| Q0ILJ3 | SUT2_ORYSJ | No assigned EC number | 0.6556 | 0.9267 | 0.9341 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 505 | |||
| TIGR01301 | 477 | TIGR01301, GPH_sucrose, GPH family sucrose/H+ symp | 0.0 | |
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 2e-08 | |
| pfam13347 | 425 | pfam13347, MFS_2, MFS/sugar transport protein | 2e-08 | |
| COG2211 | 467 | COG2211, MelB, Na+/melibiose symporter and related | 2e-06 | |
| TIGR00883 | 394 | TIGR00883, 2A0106, metabolite-proton symporter | 4e-05 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 0.001 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 0.002 |
| >gnl|CDD|233349 TIGR01301, GPH_sucrose, GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Score = 718 bits (1856), Expect = 0.0
Identities = 314/475 (66%), Positives = 365/475 (76%), Gaps = 9/475 (1%)
Query: 28 VPLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVG 87
VPLRKLL+VASVA G+QFGWALQLSLLTPYVQELGIPHAWASIIWLCGP+SGL VQPLVG
Sbjct: 1 VPLRKLLRVASVAAGVQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVG 60
Query: 88 HFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGD--RGDFRPRAIAVFVFG 145
+ SDRCTSRFGRRRPFI GA +A AV+LIG +ADIG L GD +PRAI VFV G
Sbjct: 61 YLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVG 120
Query: 146 FWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKI 205
FWILDVANNM QGPCRA LADLTG D RRTR+ANAYFS FMA+GN+LGYA G++SG +KI
Sbjct: 121 FWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKI 180
Query: 206 LPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQS 265
PFT T AC V CANLKS F +D+I +AI T I+ SA E PL D + E S
Sbjct: 181 FPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFI--NSEAAPPS 238
Query: 266 SDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQ 325
EAF ELFG F+Y +WI+L+VT L W+ WFPF+LFDTDWMGRE+YGG N+G
Sbjct: 239 KHGEEAFFGELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGA 298
Query: 326 NYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAG-FIWGISNILMALCFLAMLILYY 384
Y GVR GA GLMLNSVVLGITS+ MEKLCR WGAG +WGI NI++A+C A +++ Y
Sbjct: 299 KYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTY 358
Query: 385 VAIHMDYRGHDL----PPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGL 440
VA + Y D PP GI +ALI+F ILG PLAITYS+P+AL SIR+ +LG GQGL
Sbjct: 359 VAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGL 418
Query: 441 SLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPR 495
S+GVLNLAIVIPQI+VS+GSGPWDQLFGGGN PAF VG ++A GL+A++ +PR
Sbjct: 419 SMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPR 473
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. Length = 477 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 2e-08
Identities = 78/462 (16%), Positives = 146/462 (31%), Gaps = 72/462 (15%)
Query: 36 VASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCG--------PVSGLFVQPLVG 87
VA++ GG FG+ + + + + I C VS V L+G
Sbjct: 4 VAAL-GGFLFGYDTGVIGAFLTLIKFFKRFGALTSIGACAASTVLSGLIVSIFSVGCLIG 62
Query: 88 HFSDR-CTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGF 146
RFGR++ ++ + + + LL G + + + R I G
Sbjct: 63 SLFAGKLGDRFGRKKSLLIGNVLFV-IGALLQGFAKGKSFYM----LIVGRVIVGLGVGG 117
Query: 147 WILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSG----- 201
+ V ++++ K R + + L + G ++ G
Sbjct: 118 ISVLVPM---------YISEIAPKKLRGALGS--LYQLGITFGILVAAIIGLGLNKYSNS 166
Query: 202 ----WFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPF 257
L F + L + V+ + A A G D
Sbjct: 167 DGWRIPLGLQFVPAILLLIGLLFLPESPRWLVLKGKLE---EARAVLAKLRGVSDVDQEI 223
Query: 258 SEE--GHEQSSDVHEAFLWELFGTFRYF-----SGTIWIILIVTALTWLGWFPFLLFDTD 310
EE E+S + +A ELF + I +T + + ++ +F+T
Sbjct: 224 QEEKDSLERSVEAEKASWLELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFETL 283
Query: 311 WMGREIYGGEPNEGQNYAT-----------GVR----MGALGLMLNSVVLGITSVLMEKL 355
+ + N+ G R +GA G+ + +VLG+ + + K
Sbjct: 284 GLSDSLLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVALLGVAK- 342
Query: 356 CRKWGAGFIWGISNILMALCFLAML-ILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGG 414
GAG + + +L F + +V + +L P G+ A+ I T
Sbjct: 343 --SKGAGIVAIVFILLFIAFFALGWGPVPWVIV------SELFPLGVRPKAMAIATAANW 394
Query: 415 PLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVV 456
+ + + I G + G+L L I+ V
Sbjct: 395 --LANFLIGFLFPIITGAIGGYVFLVFAGLLVLFILFVFFFV 434
|
Length = 449 |
| >gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 2e-08
Identities = 89/462 (19%), Positives = 166/462 (35%), Gaps = 100/462 (21%)
Query: 57 YVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVL 116
Y LG+ A I+L + F P+VG DR +R+G+ RP+++ GA I +A+
Sbjct: 26 YTDVLGLSAAAVGTIFLVARIWDAFTDPIVGAIIDRTRTRWGKFRPWLLIGA--IPLAIS 83
Query: 117 LIGLSADIGWLLGDRGDFRPRAIAVFVFGFWIL-DVANNMTQGPCRALLADLTGKDHRRT 175
L+ L A L A ++ F +IL +A P +L+ LT RT
Sbjct: 84 LVLLFATPFGLSM-------TAKLIYAFITYILLGLAYTFVNIPYWSLIPVLTRDPKERT 136
Query: 176 RVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAI- 234
+A +Y + +G +L I P + N +FL + IAI
Sbjct: 137 SLA-SYRRIGATIGGLLVAV---------IAPPLVALLGG---GNGAKGYFLAALIIAIL 183
Query: 235 ---TTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGT-FRYFSGTIWII 290
I + E +Q S L ++F F+ + + I+
Sbjct: 184 AVVGFLICFAGTKERVSVPPEQKEKVS--------------LRDMFKALFK--NRPLLIL 227
Query: 291 LIVTALTWLGWF----PFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLG 346
L++ L L L + T +G + ++ L++ ++
Sbjct: 228 LLLYLLNALAMAVRNGLLLYYFTYVLGNA----------------GLFSVLLLIGTIAAI 271
Query: 347 ITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAAL 406
+ + L L +++G + + +L A+ + + L P G + L
Sbjct: 272 LGAPLWPWLAKRFGKKRTFLLGMLLAAIGLVLLFFL---------------PPGSLWLFL 316
Query: 407 IIFTILGGPLAITYSVPYALVS-----------IRTESLGLGQGLSLGVLNLAIVIPQIV 455
++ + G L + +P+A+++ R E G++ + + A + +
Sbjct: 317 VLVVLAGIGLGLATLLPWAMLADVVDYGEWKTGKRRE------GITFSLYSFADKLGGAL 370
Query: 456 VSMGSGPWDQLFG----GGNSPAFAVGGISALAGGLIAILAI 493
G G A A+ GI L + A+LA+
Sbjct: 371 GGAIVGLLLAFAGYVANATAQSAAALSGIRLLFTLIPAVLAL 412
|
This family is part of the major facilitator superfamily of membrane transport proteins. Length = 425 |
| >gnl|CDD|225121 COG2211, MelB, Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 2e-06
Identities = 80/419 (19%), Positives = 145/419 (34%), Gaps = 80/419 (19%)
Query: 22 PPARAKVPLRKLLKVAS--VAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSG 79
+ K+ L++ + A FG + L LL Y G+ A A I+L +
Sbjct: 3 NSSSKKLSLKEKIGYGLGDFASNFAFG-IVVLYLLFFYTDVFGLSAALAGTIFLVARIID 61
Query: 80 LFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAI 139
P++G DR SR+GR RP+++ GAI A+ +L+ ++ D G
Sbjct: 62 AITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPD----FSMTGKL---IY 114
Query: 140 AVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNIL-GYATGS 198
A+ + +L + + P AL ++T R + ++ +F ++G +L
Sbjct: 115 ALVT--YMLLGLGYTLVNIPYGALGPEITQDPQERASL-TSWRMVFASLGGLLVAVLFPP 171
Query: 199 FSGWF----KILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQS 254
F K L + T A L VI + I E +
Sbjct: 172 LVKLFGGGDKALGYQGT------------ALVLGVIGV-ILLLFCFFNVKERVV------ 212
Query: 255 APFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLL-----FDT 309
E + V F+ ++L++ L F + T
Sbjct: 213 -----ETQPTKTGVKLKLKDSFLLIFK---NRPLLLLLLMNLLLFIAFNIRGSIMVYYVT 264
Query: 310 DWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISN 369
+G L L+ + L I +L +L +K+G ++ I
Sbjct: 265 YVLGDPE---------------LFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGL 309
Query: 370 ILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVS 428
+L+A+ +L + P G V+ ++ I G I +P+A+V+
Sbjct: 310 LLLAVGYLLLYFT---------------PAGSVVLIVVALIIAGVGTGIANPLPWAMVA 353
|
Length = 467 |
| >gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 4e-05
Identities = 37/181 (20%), Positives = 61/181 (33%), Gaps = 27/181 (14%)
Query: 30 LRKLLKVASVAGGIQFGWALQLSLLTPY-----VQELGIPHAWASIIWLCGPVSGLFVQP 84
L K K + G+ L+T Y Q LG+ A ++ + + P
Sbjct: 214 LTKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIP 273
Query: 85 LVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVF 144
L G SD R GRR I+ ++ +AV L+ D G +F F
Sbjct: 274 LSGALSD----RIGRRPVLIIFTVLAALLAVPLLMALLDSGS------------FTLFFF 317
Query: 145 GFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSF-SGWF 203
+ + M GP + L +L + R T + AY + + + +
Sbjct: 318 LVLGMALIGGMYTGPMGSFLPELFPTEVRYTGASLAY-----NLAGAIFGGFAPYIAAAL 372
Query: 204 K 204
Sbjct: 373 V 373
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.001
Identities = 71/419 (16%), Positives = 134/419 (31%), Gaps = 78/419 (18%)
Query: 36 VASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCT 94
+ A G +L L Y+ ++LGI ++ + QPL G SDR
Sbjct: 1 LFLAAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDR-- 58
Query: 95 SRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANN 154
FGRRR ++ G + A+ +LL+ ++ + LL + + G
Sbjct: 59 --FGRRR-VLLIGLLLFALGLLLLLFASSLWLLL----------VLRVLQGL-----GGG 100
Query: 155 MTQGPCRALLADLTGKDHRRTRVA--NAYFSLFMAVGNILGYATGSFSGWFKILPFTLTS 212
AL+AD + R + +A F L A+G +LG S GW
Sbjct: 101 ALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLASLFGW---------- 150
Query: 213 ACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAF 272
++AF + I + ++A P S + +
Sbjct: 151 ---------RAAFLILAILALLAAVLAALLLPRPPPESKRPKP---------AEEAPAPL 192
Query: 273 LWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVR 332
+ R + + L++ + +L P +
Sbjct: 193 VPAWKLLLRDPVLWLLLALLLFGFAFFALLTYL---------------PLYQEVLGLSAL 237
Query: 333 MGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYR 392
+ L L L ++ I +L+ +L + G ++ +L+ L L + +L
Sbjct: 238 LAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALL---------- 287
Query: 393 GHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVI 451
+ ++ AL++ G + + E G GL +L +
Sbjct: 288 -SLTESSLWLLVALLLLGFGAGLVFPALNA-LVSDLAPKEERGTASGLYNTAGSLGGAL 344
|
Length = 346 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.002
Identities = 31/155 (20%), Positives = 54/155 (34%), Gaps = 22/155 (14%)
Query: 45 FGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFI 104
L L ++LG+ + A +I + L G+ SD RFGRRR +
Sbjct: 13 LDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSD----RFGRRRVLL 68
Query: 105 VCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALL 164
+ + ++LL ++ + + G ++L + AL+
Sbjct: 69 LGLLLFALGSLLL----------------AFASSLWLLLVGRFLLGLGGGALYPAAAALI 112
Query: 165 ADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSF 199
A+ R A FS +G +LG G
Sbjct: 113 AEWFPPKERGR--ALGLFSAGFGLGALLGPLLGGL 145
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 505 | |||
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 100.0 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 100.0 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 100.0 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 100.0 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 100.0 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 100.0 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 100.0 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 100.0 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 100.0 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 100.0 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 100.0 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.98 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.98 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.98 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.98 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.98 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.98 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.97 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.97 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.97 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.97 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.97 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.97 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.97 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.97 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.97 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.97 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.97 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.97 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.97 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.97 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.97 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.97 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.97 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.97 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.97 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.97 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.97 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.97 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.97 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.97 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.97 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.97 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.97 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.97 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.97 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.97 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.97 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.97 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.97 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.97 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.97 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.96 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.96 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.96 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.96 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.96 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.96 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.96 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.96 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.96 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.96 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.96 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.96 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.96 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.96 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.96 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.96 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.96 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.96 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.96 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.96 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.96 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.96 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.96 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.95 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.95 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.95 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.95 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.95 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.95 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.95 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.94 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.94 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.94 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.94 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.94 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.94 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.94 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.94 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.94 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.93 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.92 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.92 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.91 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.9 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 99.9 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.9 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.9 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.9 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.9 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.89 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.89 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 99.89 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.88 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.88 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.88 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.86 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.86 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.86 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.85 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.84 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.84 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.8 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.79 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.79 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.75 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.74 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.68 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.64 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.56 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.53 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.51 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.43 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.43 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.41 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 99.4 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.39 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.39 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.38 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.37 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.36 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.36 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.36 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.35 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.34 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.33 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.33 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.32 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.32 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.32 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.32 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.32 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.31 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.31 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.3 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.3 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.3 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.3 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.3 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.3 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.29 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.29 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.28 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.28 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.28 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.28 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.28 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.27 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.27 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.27 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.27 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.25 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.25 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.25 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.24 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.23 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.22 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.22 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.21 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.21 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.21 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.21 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.2 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.2 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.2 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.19 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.19 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.18 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.18 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.18 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.17 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.15 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.15 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.14 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.13 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.13 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.13 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 99.12 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 99.12 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.11 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.1 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.08 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.08 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.07 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.06 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.05 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.05 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.05 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.04 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.04 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.04 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.03 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 99.02 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 99.02 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.02 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.01 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.01 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.0 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 98.99 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 98.98 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 98.98 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 98.98 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 98.96 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.96 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.93 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 98.92 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.91 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.91 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.91 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.9 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.88 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 98.88 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 98.87 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.85 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.83 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 98.83 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 98.81 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 98.8 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 98.79 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 98.78 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.77 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.75 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 98.74 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.72 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 98.71 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.71 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.7 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.6 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.58 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 98.58 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.57 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.53 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.49 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.46 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.45 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 98.4 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 98.39 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.38 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.38 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 98.31 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.29 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 98.21 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.2 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.19 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.18 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 98.17 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 98.06 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 98.04 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 97.99 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 97.95 | |
| KOG4830 | 412 | consensus Predicted sugar transporter [Carbohydrat | 97.94 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 97.91 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 97.9 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 97.85 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 97.82 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 97.65 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 97.62 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 97.61 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 97.53 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 97.43 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 97.4 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.39 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 97.31 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 96.81 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 96.68 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 96.53 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 96.51 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 96.38 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 96.14 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 96.12 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 95.8 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 95.76 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 95.56 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 95.54 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 95.52 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 95.3 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 95.15 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 95.11 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 93.32 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 93.15 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 92.92 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 91.86 | |
| KOG2601 | 503 | consensus Iron transporter [Inorganic ion transpor | 89.37 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 89.2 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 88.75 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 87.47 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 87.0 | |
| COG5336 | 116 | Uncharacterized protein conserved in bacteria [Fun | 80.01 |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-45 Score=352.53 Aligned_cols=468 Identities=66% Similarity=1.180 Sum_probs=381.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHH
Q 010630 29 PLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGA 108 (505)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~ 108 (505)
+.++++.++...++.++++....+++++|++++|.++.+.++++.+..+.+.+.+|+.|+++||+++|+||||++++.+.
T Consensus 2 ~~~~li~~~~~~~Giq~~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~ 81 (477)
T TIGR01301 2 PLRKLLRVASVAAGVQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGA 81 (477)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999998778
Q ss_pred HHHHHHHHHHhcccccccccCCCC--CCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHH
Q 010630 109 ISIAVAVLLIGLSADIGWLLGDRG--DFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFM 186 (505)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 186 (505)
+..++++.+++++++....+.++. .......+..+++..+..++.+...++..++++|.+|+++|.++.++++.+...
T Consensus 82 ~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~ 161 (477)
T TIGR01301 82 ALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFM 161 (477)
T ss_pred HHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHH
Confidence 888888888877766543332221 111222345566666778899999999999999999998775437999999999
Q ss_pred HHHHHHHhhccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCCCCCc
Q 010630 187 AVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSS 266 (505)
Q Consensus 187 ~~g~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 266 (505)
++|.++|+.++++..+...+|+..+...+..+.+.+..|++.+++.+++.++..+..||.+..++++.++++ .++.++
T Consensus 162 ~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~~--~~~~~~ 239 (477)
T TIGR01301 162 AIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINSE--AAPPSK 239 (477)
T ss_pred HHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhhh--cccccc
Confidence 999999999998754444455554444445556899999999999999999999999997653322211111 111111
Q ss_pred chHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHH
Q 010630 267 DVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLG 346 (505)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (505)
.+.+..++++++.+++.||.++.+++++++.|++++++..|.++|+++++|+.++.++..|+.|...+.+++..+++...
T Consensus 240 ~~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~ 319 (477)
T TIGR01301 240 HGEEAFFGELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLG 319 (477)
T ss_pred cchhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 22345678999999999999999999999999999999999999999999999888888999999999999999999999
Q ss_pred HHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHHHHHHHHhhhcc-ccCCC---CCCChhHHHHHHHHHHHhhHHHHHhh
Q 010630 347 ITSVLMEKLCRKWGA-GFIWGISNILMALCFLAMLILYYVAIHMD-YRGHD---LPPNGIVIAALIIFTILGGPLAITYS 421 (505)
Q Consensus 347 i~~~~~g~l~~r~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~g~~~~~~~~ 421 (505)
+.+++..++.+|+|+ |+...++.++.++++....+.+...++.+ +.++. .|..+..+..++.+.+.|+.++..++
T Consensus 320 i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~s 399 (477)
T TIGR01301 320 ITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYS 399 (477)
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHH
Confidence 999999999999984 77778999999999988887764322110 00000 12222347788889999999999999
Q ss_pred chhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHhccCCCC
Q 010630 422 VPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPRSSA 498 (505)
Q Consensus 422 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (505)
+|++++++..+++.++.|.++|+.|++..++|.+..+..|.+.+..|++..+.+.++++.++++++.+.+..|+.++
T Consensus 400 iPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~~ 476 (477)
T TIGR01301 400 IPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPRV 476 (477)
T ss_pred HhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 99999999999644788999999999999999999999999888888778889999999999999999999988764
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-38 Score=283.48 Aligned_cols=451 Identities=57% Similarity=0.998 Sum_probs=335.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHH
Q 010630 31 RKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAIS 110 (505)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~ 110 (505)
++++.++...++.+++|.....+++||++++|++....+.++....+.+.+.+|+.|..+||+++|+||||+++..+...
T Consensus 32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~ 111 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFGWALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLL 111 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHH
Confidence 77888888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccccccccCCCCC--CcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHH
Q 010630 111 IAVAVLLIGLSADIGWLLGDRGD--FRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAV 188 (505)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 188 (505)
..++++++.++.+++..++++.. .........+++..+..+.....+.++.+++.|+..++++.+ +++++......+
T Consensus 112 i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~-~Ans~f~~f~av 190 (498)
T KOG0637|consen 112 IAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKT-RANSVFSFFMAV 190 (498)
T ss_pred HHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhh-ccchhHHHHHHh
Confidence 99999999999999888877633 345667788899999999999999999999999999988883 299999999999
Q ss_pred HHHHHhhccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCCCCCcch
Q 010630 189 GNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDV 268 (505)
Q Consensus 189 g~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 268 (505)
|+.+|..++++..+...+|+.............+..+.....+..+......+...|++...+. ...+....
T Consensus 191 GnvLGY~~g~y~~~~~~~~Ft~~~~~~~~C~~~~~~~~~~v~L~~i~~~~~l~~~~~~~~s~~~--------~~~~~~~~ 262 (498)
T KOG0637|consen 191 GNVLGYALGSYLGLYKIFPFTLTTACDLYCANLKLCFFLEVTLLLIETSESLWYPQEKPLSPKG--------TTARSKSS 262 (498)
T ss_pred cceeeeecccccCceEEeehHHHHHHHHHHHHHHHHHHHhhhhhheecccccccccccCCCCCc--------cccccccc
Confidence 9999999998877777666554433222222333333322222222211111111111111110 00111112
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcc------cccccchhhHHHHHHHH
Q 010630 269 HEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQ------NYATGVRMGALGLMLNS 342 (505)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 342 (505)
+.+...+....++++||++|.+++..++.|++++++..|.++|+++++|++++.... .|+.|+.++.+++++++
T Consensus 263 ~~~~~~e~fG~~~~mpr~m~~L~i~~lltW~a~f~f~LF~TDfmG~~vy~GDp~a~~~S~a~~~Y~~GV~~G~~GL~ins 342 (498)
T KOG0637|consen 263 KLPFLLEIFGALKVMPRPMRMLLIVTLLTWIAWFPFLLFDTDFMGREVYGGDPKADENSEAKKLYNAGVRMGCLGLMLNS 342 (498)
T ss_pred CcchHHHHhchHhhCChhHHHHHHHHHHHHHHHHHHHHHHHHhcchHhhCCCCCCCcchhHHHHHHhccccchHHHHHHH
Confidence 233445777788899999999999999999999999999999999999999998886 89999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHH--HHHHHHHHHHHHHHHhhhccccCCCC--CCChhHHHHHHHHHHHhhHHHH
Q 010630 343 VVLGITSVLMEKLCRKWGAGFIWGISNI--LMALCFLAMLILYYVAIHMDYRGHDL--PPNGIVIAALIIFTILGGPLAI 418 (505)
Q Consensus 343 ~~~~i~~~~~g~l~~r~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~ 418 (505)
+...+.+....++.||+|-|+.+..+.. ..++++..+....++..+.....+.+ +.....+..+......++-+..
T Consensus 343 ~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~~~~~~~~~~~~G~~~~~~~~~p~~l~~~y~~~g~~~a~ 422 (498)
T KOG0637|consen 343 IVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLNTYVVLSHRSTAGILSSPLLTVPYGALALYAILGIPLAI 422 (498)
T ss_pred HHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhhhHHHHHHHHhhcceeecchhcccHHHHHHHHHhCCcccc
Confidence 9999999999999999995444433332 22233332222222211111111110 1122334555556666666666
Q ss_pred HhhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHH
Q 010630 419 TYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAI 490 (505)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 490 (505)
.+.++++..+....+.++.+|...|+.|....+.+++.....|.+.+..|+.....+...+...+++.+..+
T Consensus 423 t~~~pf~~~s~~~~~sg~g~G~~~gvln~~I~ipQvivs~~~Gp~~~~~G~~~~~~~~~~a~s~~~~~i~al 494 (498)
T KOG0637|consen 423 TFSIPFALASIEIGNSGLGQGLDLGVLNCAIVIPQVLVSLGLGPLDQLFGGGNLPAFVSGAVALLIGGIVAL 494 (498)
T ss_pred ccccccccccccccCccCCCCceeeeeeeeeeehhheeeccccchhhhcCCcchhHHHHHHHHHHHHHHHhe
Confidence 777777777655555556779999999999999999999999999999987777777777776666665544
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-35 Score=267.79 Aligned_cols=384 Identities=19% Similarity=0.162 Sum_probs=311.0
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhH
Q 010630 25 RAKVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFI 104 (505)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~ 104 (505)
.++..+..++.+.+..|............+|++.+|+|+|..+.|++.+++.++.+++.|+...+.| |+.||+.++
T Consensus 7 ~~~~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~----r~~Rr~lLl 82 (394)
T COG2814 7 ARKPMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTG----RLERRRLLL 82 (394)
T ss_pred ccccchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHc----ccchHHHHH
Confidence 3455667788888888888888999999999999999999999999999999999999999999999 999998777
Q ss_pred HHHHHHHHHHHHHHhcccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHH
Q 010630 105 VCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSL 184 (505)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 184 (505)
. ...+++++.++.++++|+ +.++++|.+.|+..+..++...+..+|+.|+++|+ ++++++..
T Consensus 83 ~-~l~lFi~~n~l~alAp~f---------------~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~--~Aiaiv~~ 144 (394)
T COG2814 83 G-LLALFIVSNLLSALAPSF---------------AVLLLARALAGLAHGVFWSIAAALAARLVPPGKRG--RALALVFT 144 (394)
T ss_pred H-HHHHHHHHHHHHHHhccH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchh--hHHHHHHH
Confidence 6 667788888899999998 89999999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHhhccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCCCC
Q 010630 185 FMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQ 264 (505)
Q Consensus 185 ~~~~g~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 264 (505)
+..++.++|.+++.++.+.. |||..|++.+++.++..+..+..+| |++..++
T Consensus 145 G~tlA~v~GvPLGt~ig~~~---------------GWR~~F~~ia~l~ll~~~~~~~~lP--~~~~~~~----------- 196 (394)
T COG2814 145 GLTLATVLGVPLGTFLGQLF---------------GWRATFLAIAVLALLALLLLWKLLP--PSEISGS----------- 196 (394)
T ss_pred HHHHHHHHhccHHHHHHHHh---------------hHHHHHHHHHHHHHHHHHHHHHhCC--CccCCCC-----------
Confidence 99999999999998865554 9999999999999999998888888 1111111
Q ss_pred CcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHH
Q 010630 265 SSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVV 344 (505)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (505)
++...++..+.+|+ +..+...+..++...+.+....|..+++. ++.+.+. ..-.+.++.++++
T Consensus 197 ----~~~~~~~~~~~l~~--p~v~~~l~~t~l~~~g~F~~ftYi~P~L~-~v~g~s~----------~~vs~~Ll~~Gv~ 259 (394)
T COG2814 197 ----LPGPLRTLLRLLRR--PGVLLGLLATFLFMTGHFALYTYIRPFLE-SVAGFSV----------SAVSLVLLAFGIA 259 (394)
T ss_pred ----CCcchhHHHHHhcC--chHHHHHHHHHHHHcchhhhHHhHHHHHH-HccCCCH----------hHHHHHHHHHHHH
Confidence 11224456677787 88888888999988899999999999884 3333222 1224666678999
Q ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchh
Q 010630 345 LGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPY 424 (505)
Q Consensus 345 ~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 424 (505)
.++++++.|++.|| +.|+.+.....+.++.+..+.+.. . +.+.......+.|+...... +
T Consensus 260 ~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~--------------~--~~~~~~~~~~~wg~a~~~~~---~ 319 (394)
T COG2814 260 GFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTG--------------A--SPALALALLFLWGFAFSPAL---Q 319 (394)
T ss_pred HHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhc--------------c--hHHHHHHHHHHHHHHhhhhh---h
Confidence 99999999999999 888888888888887777766662 2 34455555555665555444 4
Q ss_pred HhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHhccCCC
Q 010630 425 ALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPRSS 497 (505)
Q Consensus 425 ~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (505)
.+..+..+..++.++.+.+++....++|..+|..++|.+.|+.| +....+.++++.+++.++.....++++
T Consensus 320 ~~~~~~a~~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g--~~~~~~~~a~l~~~a~~~~~~~~~~~~ 390 (394)
T COG2814 320 GLQTRLARLAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALG--YAATGWVGAALLLLALLLALLSARKDR 390 (394)
T ss_pred HHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--hHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 44444444333889999999999999999999999999999966 677788888888888777666555443
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=248.77 Aligned_cols=377 Identities=14% Similarity=0.130 Sum_probs=280.1
Q ss_pred HHHHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHHhccccccccc
Q 010630 49 LQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLL 128 (505)
Q Consensus 49 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (505)
.+....|.+.++.++|.+|.|.+.+.+.+.+.++..+.|.++| |.+.|+.+-. +++.+.+..+++.++++.
T Consensus 47 nF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sD----r~npr~fm~~-gLilsai~nil~Gfs~s~---- 117 (448)
T COG2271 47 NFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSD----RSNPRYFMAF-GLILSAIVNILFGFSPSL---- 117 (448)
T ss_pred hHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcc----cCCCceeehH-HHHHHHHHHHHHhhhhHH----
Confidence 3344567777899999999999999999999999999999999 8888865554 777788888888887765
Q ss_pred CCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhhcc--ccccccccc
Q 010630 129 GDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATG--SFSGWFKIL 206 (505)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l~--~~~~~~~~~ 206 (505)
+.+.+...+.|...+..+|++...+..++++++|| +..++.+.+.|+|..+.+++. ++...+
T Consensus 118 -----------~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG--~~~siWn~shNiGGal~~~~~~la~~~~~--- 181 (448)
T COG2271 118 -----------FLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERG--TWWSIWNTSHNIGGALAPLVALLAFFAFH--- 181 (448)
T ss_pred -----------HHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccC--ceEEEehhhhhcccchHHHHHHHHHHHhc---
Confidence 77888888999999999999999999999999999 999999999999999998887 442221
Q ss_pred cccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCC----CCcccC-CCCCcchHHHHHHH-HHHHH
Q 010630 207 PFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSA----PFSEEG-HEQSSDVHEAFLWE-LFGTF 280 (505)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~-~~~~~ 280 (505)
.+||..|++.+++.++..++.++..+|+|+..--++- ++..+. +++++.+.-+.++. ....+
T Consensus 182 ------------~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~~~d~~e~~~~~~~~~~ls~~~i~~~YVL 249 (448)
T COG2271 182 ------------GGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGDPLEIYEEEKENEGLTAWQIFVKYVL 249 (448)
T ss_pred ------------cchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHhhcCchhhhhhhccCCCccHHHHHHHHHH
Confidence 2899999999999999999999999999875432211 111111 11111110111111 23456
Q ss_pred hcccHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHh-
Q 010630 281 RYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKW- 359 (505)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~~r~- 359 (505)
+| |.+|.+++..++....-+.+..+.|.|+.|. .+.+. ..+.+....+-.+++.+++++|+++||+
T Consensus 250 ~N--k~iW~la~a~vfvYivR~gi~dW~p~YL~e~-k~~s~----------~~a~~a~~lfE~agl~G~Ll~GwlSDklf 316 (448)
T COG2271 250 KN--KLIWLLALANVFVYVVRYGINDWGPLYLSEV-KGFSL----------VKANWAISLFEVAGLPGTLLAGWLSDKLF 316 (448)
T ss_pred cC--hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh-cCCCH----------HHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 66 9999999999999999999999999999753 33222 2334666678889999999999999997
Q ss_pred -cchHHHHH-HHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhcccccc
Q 010630 360 -GAGFIWGI-SNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLG 437 (505)
Q Consensus 360 -g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 437 (505)
|||....+ .+++..++.+.+... |+. +.+...+++...|+..-...-+.-....|..|+ +.
T Consensus 317 kgrR~p~~~i~~~~i~~~~~~~w~~--------------~~~-~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK--~A 379 (448)
T COG2271 317 KGRRGPMALIFMLLITASLVLYWLA--------------PNG-SYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPK--KA 379 (448)
T ss_pred ccccchHHHHHHHHHHHHHHHHHcC--------------CCc-cHHHHHHHHHHHHHHHhhHHHHHHHHHhccccH--hh
Confidence 56655543 444444444444433 321 456666666667765444443444566788898 99
Q ss_pred hhHHHHHHHHHHHH-HHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHhcc
Q 010630 438 QGLSLGVLNLAIVI-PQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIP 494 (505)
Q Consensus 438 ~g~~~g~~~~~~~~-~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (505)
.|++.|+...+.++ |...+....|++.|.+| ....|++..+.++++.++.+...+
T Consensus 380 aGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~g--W~g~Fi~~~~~a~l~~lll~~~~~ 435 (448)
T COG2271 380 AGTATGFVGLFAYLIGAALAGLPLGYIADTWG--WDGGFIVLSIAALLAILLLLPVWN 435 (448)
T ss_pred ccchhchhhhHHHHhhHHhcCCcceeeEecCC--CcchHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999 88999999999999876 455666665566665555554443
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=259.38 Aligned_cols=372 Identities=16% Similarity=0.100 Sum_probs=263.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHH
Q 010630 32 KLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISI 111 (505)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~ 111 (505)
..+.+....+..........+.+|.+.+++|.|+.+.|++.+.+.+...+++++.|.++| |+||||.+.. +....
T Consensus 10 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~d----r~g~r~~~~~-~~~~~ 84 (390)
T PRK03545 10 RVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTS----NVERRKLLIG-LFVLF 84 (390)
T ss_pred HHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHc----CCChHHHHHH-HHHHH
Confidence 344444433333333344556678889999999999999999999999999999999999 9999988877 45556
Q ss_pred HHHHHHHhcccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHH
Q 010630 112 AVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNI 191 (505)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 191 (505)
.++.+.+.+++++ +.+++.|++.|++.+...+...+++.|++|+++|+ +++++.....++|..
T Consensus 85 ~~~~~~~~~~~~~---------------~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~--~~~g~~~~~~~~g~~ 147 (390)
T PRK03545 85 IASHVLSALAWNF---------------TVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKA--QALSLLATGTALAMV 147 (390)
T ss_pred HHHHHHHHHhccH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhh--hHHHHHHHHHHHHHH
Confidence 6666666677666 78888899999998888888899999999999999 999999999999999
Q ss_pred HHhhccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCCCCCcchHHH
Q 010630 192 LGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEA 271 (505)
Q Consensus 192 ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (505)
+++.+++.+.... +||+.|++.+++.++..++.....||+++++ + +
T Consensus 148 ig~~l~~~l~~~~---------------gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~--~-----------------~ 193 (390)
T PRK03545 148 LGLPLGRVIGQYL---------------GWRTTFLAIGGGALITLLLLIKLLPLLPSEH--S-----------------G 193 (390)
T ss_pred HHhhHHHHHHHHh---------------cHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC--c-----------------c
Confidence 9999887633222 8999999998877766666555555543210 0 0
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHH
Q 010630 272 FLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVL 351 (505)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 351 (505)
..++..+.+|+ +.++......++..........+.++++.+ .++.+... .........+..+++.++
T Consensus 194 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~g~s~~~----------~~~~~~~~~~~~~~g~~~ 260 (390)
T PRK03545 194 SLKSLPLLFRR--PALVSLYLLTVVVVTAHFTAYSYIEPFVQQ-VAGLSENF----------ATLLLLLFGGAGIIGSVL 260 (390)
T ss_pred hHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCccH----------HHHHHHHHHHHHHHHHHH
Confidence 12234456666 666655544444444444444566666632 23322211 123334456778889999
Q ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhh
Q 010630 352 MEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRT 431 (505)
Q Consensus 352 ~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 431 (505)
.+++.||+++|+.. .+..+..++........ + +.+..++...+.|++.....+...+.+.+..
T Consensus 261 ~g~l~dr~~~~~~~-~~~~~~~~~~~~l~~~~-------------~---~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~ 323 (390)
T PRK03545 261 FSRLGNRHPSGFLL-IAIALLLVCLLLLLPAA-------------N---SEWHLSVLSIFWGIAIMCIGLAMQVKVLKLA 323 (390)
T ss_pred HHHHhhccchhHHH-HHHHHHHHHHHHHHHHh-------------c---hHHHHHHHHHHHHHHHhcchHHHHHHHHHhC
Confidence 99999999987654 44444444433322221 1 3455566677777776655555566667765
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHhcc
Q 010630 432 ESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIP 494 (505)
Q Consensus 432 ~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (505)
| +.+|+++|+.+....+|..+||.++|.+.|..| ....+...+.+.+++.++.+...+
T Consensus 324 ~---~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~ 381 (390)
T PRK03545 324 P---DATDVAMALFSGIFNIGIGAGALLGNQVSLHLG--LSSIGYVGAALALAALVWSILIFR 381 (390)
T ss_pred C---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--hhHHHHHHHHHHHHHHHHHHHHcc
Confidence 5 577999999999999999999999999999987 677888888888888777666654
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-31 Score=257.81 Aligned_cols=378 Identities=17% Similarity=0.094 Sum_probs=260.2
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHH
Q 010630 38 SVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLL 117 (505)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~ 117 (505)
...+...+.........|.+.+++|.|+.+.+++.+...++..+++++.|+++| |+|||+.++.... ...++.+.
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~d----r~g~r~~~~~~~~-~~~~~~~~ 96 (406)
T PRK11551 22 LVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLAD----RIGRKRILIVSVA-LFGLFSLA 96 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCCchhHHHHHH-HHHHHHHH
Confidence 344444455555666778888999999999999999999999999999999999 9999998887444 44444455
Q ss_pred HhcccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhhcc
Q 010630 118 IGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATG 197 (505)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l~ 197 (505)
..+.+++ +.+++.+++.|++.+...+...+++.|++|+++|+ +++++......+|..+++.++
T Consensus 97 ~~~~~~~---------------~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~--~~~~~~~~~~~~g~~~~~~~~ 159 (406)
T PRK11551 97 TAQAWDF---------------PSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRG--TAVSLMYCGVPFGGALASVIG 159 (406)
T ss_pred HHHhccH---------------HHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 5555554 77788899999999998889999999999999999 999999999999999998887
Q ss_pred ccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCCCCCcchHHHHHHHHH
Q 010630 198 SFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELF 277 (505)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (505)
..+... .+|++.|++.+++.++..++...++||+++..+++.++ + ++++..+..+
T Consensus 160 ~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~------~----~~~~~~~~~~ 214 (406)
T PRK11551 160 VLAAGD---------------AAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAG------K----QRAPVLRALF 214 (406)
T ss_pred HHHccc---------------cCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcc------h----hhhhhHHHHh
Confidence 553222 28999999887666666666666678765432211000 0 0111111222
Q ss_pred HHHhcccHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010630 278 GTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCR 357 (505)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~~ 357 (505)
+..+. +..+.+....++..........+.+.++.+ .+.+... .........+...++.++.|++.|
T Consensus 215 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~g~s~~~----------~~~~~~~~~~~~~~~~~~~g~l~d 280 (406)
T PRK11551 215 GEGRA--TATLLLWISYFFTLIVLYFLLNWLPSLLVG--QGLSRSQ----------AGLVQIAFNIGGALGSLLIGALMD 280 (406)
T ss_pred hhhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCChhh----------hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 223333333333333444455566666632 2222211 123334456778889999999999
Q ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhcccccc
Q 010630 358 KWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLG 437 (505)
Q Consensus 358 r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 437 (505)
|+|+|+.+..+.....+++..+... + +.+...+...+.|++.+...+..+++..|.+|+ ++
T Consensus 281 r~g~~~~~~~~~~~~~~~~~~~~~~--------------~---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~--~~ 341 (406)
T PRK11551 281 RLRPRRVVLLIYAGILASLAALAAA--------------P---SFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPT--QV 341 (406)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhc--------------C---cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcch--hh
Confidence 9999998887666655555544433 1 234455566677777777777888899999998 99
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHhccCC
Q 010630 438 QGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPRS 496 (505)
Q Consensus 438 ~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (505)
+|+..|+.+....++..++|.+.|.+.+..+ .+...+.....+.+++.+..+...++.
T Consensus 342 ~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (406)
T PRK11551 342 RGTGVGAAVAVGRLGSMAGPLLAGQLLALGR-STVGVIGASIPVILVAALAALLLVSRP 399 (406)
T ss_pred hhhhhhHHHHhhhHHHHHHhhhHhhhhccCC-chHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 9999999999999999999999999998753 334445555555555555555444433
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-31 Score=259.06 Aligned_cols=388 Identities=12% Similarity=0.051 Sum_probs=254.6
Q ss_pred HHHHHHHHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHHhccccc
Q 010630 45 FGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADI 124 (505)
Q Consensus 45 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~ 124 (505)
+........+|.+.+++|.|..+.+++.+.+.++..+++++.|+++| |+|||+.+.. +.+...++.++..+.+++
T Consensus 37 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~d----r~g~r~~~~~-~~~~~~~~~~~~~~~~~~ 111 (434)
T PRK11663 37 FTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSD----RSNARYFMGI-GLIATGIINILFGFSSSL 111 (434)
T ss_pred HhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHh----hcCCchhHHH-HHHHHHHHHHHHHHHhHH
Confidence 33345567788889999999999999999999999999999999999 9999988766 555555566666565554
Q ss_pred ccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhhccccccccc
Q 010630 125 GWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFK 204 (505)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l~~~~~~~~ 204 (505)
+.+++.+++.|++.+...+...+++.|++|+++|+ +++++.+...++|..+++.+.+.+....
T Consensus 112 ---------------~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg--~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 174 (434)
T PRK11663 112 ---------------WAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERG--GWWAIWNTAHNVGGALIPLVVGAIALHY 174 (434)
T ss_pred ---------------HHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 66777788888888888888999999999999999 9999999999999999998877632222
Q ss_pred cccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCC--C-cccCCCCCcchHHHHHHHHHH--H
Q 010630 205 ILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAP--F-SEEGHEQSSDVHEAFLWELFG--T 279 (505)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~--~ 279 (505)
+||+.|.+.+++.++..++..+.+||+|++...+... + +.++.+++.+.++...++..+ .
T Consensus 175 ---------------gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (434)
T PRK11663 175 ---------------GWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHDALELAQQQEGAGLSRKEILTKYV 239 (434)
T ss_pred ---------------cHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccccccccchhccccCCChhhhHHHHH
Confidence 8999999888776666555566677765432111100 0 000000000000111222221 3
Q ss_pred HhcccHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010630 280 FRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKW 359 (505)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~~r~ 359 (505)
+++ +.++.+....++.......+..+.+.|+.++ ++.+.. ..........+...++.++.|++.||+
T Consensus 240 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-~g~s~~----------~a~~~~~~~~~~~~~g~~~~g~l~dr~ 306 (434)
T PRK11663 240 LLN--PYIWLLSFSYVLVYVVRAAINDWGNLYMSET-LGVDLV----------TANSAVSMFELGGFIGALVAGWGSDKL 306 (434)
T ss_pred hcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCHH----------HHHHHHHHHHHHHHHHHHHHhhhHHHh
Confidence 444 6777766665555555556666778877432 232221 112334445677889999999999998
Q ss_pred --cchHHH-HHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhccccc
Q 010630 360 --GAGFIW-GISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGL 436 (505)
Q Consensus 360 --g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 436 (505)
++|+.. ....+...+........ +.. +...........|++.............|..|+ +
T Consensus 307 ~~~~r~~~~~~~~~~~~~~~~~~~~~--------------~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~ 369 (434)
T PRK11663 307 FNGNRGPMNLIFAAGILLSVGSLWLM--------------PFA-SYVMQAACFFTIGFFVFGPQMLIGMAAAECSHK--E 369 (434)
T ss_pred ccCCccHHHHHHHHHHHHHHHHHHHc--------------ccc-cHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccH--h
Confidence 333332 22111111122221112 110 122222223333332221222233456788887 8
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHhccCCCCCCC
Q 010630 437 GQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPRSSAQKP 501 (505)
Q Consensus 437 ~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (505)
++|++.|+.++..++|++++|.+.|++.|..| +...|...+++.+++++..+...+++++++.
T Consensus 370 ~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g--~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (434)
T PRK11663 370 AAGAATGFVGLFAYLGAALSGYPLAKVLEIWH--WTGFFVVISIAAGISALLLLPFLNAQAPREA 432 (434)
T ss_pred hHHhHHHHHHHHHHHHHHHhcccHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHHHHhhhchhcc
Confidence 99999999999999999999999999999876 6778888888887877766666665554443
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-30 Score=247.65 Aligned_cols=380 Identities=16% Similarity=0.183 Sum_probs=257.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHH
Q 010630 29 PLRKLLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCG 107 (505)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~ 107 (505)
.++++..+....+...++..+..+.+|.+. +++|.|+.+.|++.+++.+...+.+++.|+++| |+||||.++...
T Consensus 13 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D----r~g~r~~l~~~~ 88 (399)
T PRK05122 13 LTLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYAD----TLGPKKAVVFGL 88 (399)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHh----ccCCcchHHHHH
Confidence 345566666666677778888888999865 789999999999999999999999999999999 999999988744
Q ss_pred HHHHHHHHHHHhcccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHH
Q 010630 108 AISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMA 187 (505)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 187 (505)
.+..+.+.. +.+..... ......+..+++.|++.|++.+...+...+++.|+.|+++|+ +++++......
T Consensus 89 ~~~~~~~~~-~~~~~~~~-------~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~--~~~~~~~~~~~ 158 (399)
T PRK05122 89 CGCALSGLL-YLLAGLLA-------AWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTG--RVISWNGIATY 158 (399)
T ss_pred HHHHHHHHH-HHHhhhhh-------ccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhc--cchhhhhhhhh
Confidence 443333222 22211000 001123467788999999999999999999999999999999 99999999999
Q ss_pred HHHHHHhhccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCCCCCcc
Q 010630 188 VGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSD 267 (505)
Q Consensus 188 ~g~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 267 (505)
+|..+|+.+++++.... +|++.+.+..++.++..+. .++.++.+.++ + +
T Consensus 159 ~g~~~g~~l~~~l~~~~---------------g~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-------~-~---- 207 (399)
T PRK05122 159 GALAIGAPLGVLLYHWG---------------GLAGLGLLIMLLALLGLLL----ARPRPAVPPVK-------G-E---- 207 (399)
T ss_pred HHHHHHHHHHHHHHHcc---------------cHHHHHHHHHHHHHHHHHH----HhcCCCCCCCC-------c-c----
Confidence 99999999887633222 7888877665443332221 12211111000 0 0
Q ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHH
Q 010630 268 VHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGI 347 (505)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 347 (505)
+++ .++ .+++ .+.......+...+......+.+.|+.+. +. ...........++..+
T Consensus 208 -~~~-~~~---~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~------------~~~~~~~~~~~~~~~~ 264 (399)
T PRK05122 208 -RLP-FRR---VLGR----VWPYGMGLALASIGFGTIATFITLYYAAR--GW------------DGAALALTLFGVAFVG 264 (399)
T ss_pred -chh-HHH---HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHc--cc------------ccchHHHHHHHHHHHH
Confidence 001 111 1111 11111112222233334444555555321 11 0111333345666778
Q ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhH
Q 010630 348 TSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALV 427 (505)
Q Consensus 348 ~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 427 (505)
+.++.+++.||+++|+.+..+..+.+++..+....+ +.+..++..++.|++.+...+......
T Consensus 265 ~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~l~G~~~~~~~~~~~~~~ 327 (399)
T PRK05122 265 ARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAP-----------------SPWMALIGAALTGFGFSLVFPALGVEA 327 (399)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhc-----------------cHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 889999999999999988888777777766655542 345556667788888887777766777
Q ss_pred hhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHhccCCC
Q 010630 428 SIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPRSS 497 (505)
Q Consensus 428 ~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (505)
.+..|+ +++|+++|+++....++..+++.+.|.+.+..| +...+.+.+++.+++.+....+.++++
T Consensus 328 ~~~~~~--~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (399)
T PRK05122 328 VKRVPP--QNRGAALGAYSVFLDLSLGITGPLAGLVASWFG--YPSIFLAAALAALLGLALTWLLYRRAP 393 (399)
T ss_pred HHhCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 888888 999999999999999999999999999999876 677788887777777766665544443
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-31 Score=261.59 Aligned_cols=378 Identities=12% Similarity=0.053 Sum_probs=250.2
Q ss_pred HHHHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHHh-----cccc
Q 010630 49 LQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIG-----LSAD 123 (505)
Q Consensus 49 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~-----~~~~ 123 (505)
......|.+.+++|++..+.|++.+++.+++.+++++.|+++| |+|||+.+.....+ ..+..+... .+++
T Consensus 47 ~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~D----r~g~r~~l~~~~~~-~~~~~~~~~~~~~~~~~~ 121 (467)
T PRK09556 47 NFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYAD----GKNTKQFLPFLLIL-SAICMLGFGASLGSGSVS 121 (467)
T ss_pred ChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhh----ccCccchHHHHHHH-HHHHHHHHHHHHhcccch
Confidence 3445678888999999999999999999999999999999999 99999987663333 222222222 2333
Q ss_pred cccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhhcccccccc
Q 010630 124 IGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWF 203 (505)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l~~~~~~~ 203 (505)
++.+++.|++.|++.+...+...++++|++|+++|+ +++++.....++|.++++.+..+....
T Consensus 122 ---------------~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg--~a~gi~~~~~~lG~~l~~~i~~~~~~~ 184 (467)
T PRK09556 122 ---------------LGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRG--RFLGFWNISHNLGGAGAGGVALWGANY 184 (467)
T ss_pred ---------------HHHHHHHHHHHHHHHhccchHHHHHHHHHcCcccee--eeEEeeecccchhhhHHHHHHHHHHHh
Confidence 378888999999999999999999999999999999 999999999999999998776442110
Q ss_pred ccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCC--ccc--CCCCCcchHHHHHHH-HH-
Q 010630 204 KILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPF--SEE--GHEQSSDVHEAFLWE-LF- 277 (505)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~-~~- 277 (505)
. ...+|+..|.+.+++.++..++.+++.+|+|++....++++ +++ ++++..++++...++ ..
T Consensus 185 ~------------~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (467)
T PRK09556 185 F------------FDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGKAEEIFGEPISEEDKETESTDMTKWQIFVE 252 (467)
T ss_pred h------------ccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCChhhcccCccchhhhccccccCcHHHHHHH
Confidence 0 01268888888787777766666666666554321111100 000 000000000001112 12
Q ss_pred HHHhcccHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010630 278 GTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCR 357 (505)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~~ 357 (505)
+.+++ +.+|...+..++..........+.|.|+.+ .++.+.. ..........++..++.++.|+++|
T Consensus 253 ~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~-~~g~s~~----------~a~~~~~~~~~~~~ig~~~~G~lsD 319 (467)
T PRK09556 253 YVLKN--PVIWLLCFANIFLYIVRIGIDNWSPVYAFQ-ELGFSKE----------DAINTFTLFEIGALVGSLLWGWLSD 319 (467)
T ss_pred HHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccCCCHH----------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 24566 788888887777776666777788888853 2332221 1123334456678899999999999
Q ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhcccccc
Q 010630 358 KWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLG 437 (505)
Q Consensus 358 r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 437 (505)
|+++|+.+.....+..++........ .. +.+...+..++.|+..............|..|+ +.
T Consensus 320 r~g~r~~~~~~~~~~~~~~~~~~~~~-------------~~--~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~--~~ 382 (467)
T PRK09556 320 LANGRRALVACIALALIIFTLGVYQH-------------AT--SEYMYLASLFALGFLVFGPQLLIGVAAVGFVPK--KA 382 (467)
T ss_pred HHCCCchHHHHHHHHHHHHHHHHHHh-------------cC--cHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcch--hh
Confidence 99998876654444333322222211 11 233344445555543322222233566799998 99
Q ss_pred hhHHHHHHHHHHHH-HHHHHHhhhhhhHh------------hhcCCCchHHHHHHHHHHHHHHHHHHh
Q 010630 438 QGLSLGVLNLAIVI-PQIVVSMGSGPWDQ------------LFGGGNSPAFAVGGISALAGGLIAILA 492 (505)
Q Consensus 438 ~g~~~g~~~~~~~~-~~~i~~~~~g~l~~------------~~g~~~~~~~~~~~~~~~~~~~~~~~~ 492 (505)
+|++.|+.+...++ |.+++|.+.|++.| ..| +...|.+..++.+++.+..+..
T Consensus 383 ~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~--~~~~f~~~~~~~~~~~~~~~~~ 448 (467)
T PRK09556 383 IGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTG--WAGTFAALDIAAIGCICLMAIV 448 (467)
T ss_pred HHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccC--hHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999996 77999999999999 332 6667777777777776555544
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-30 Score=260.60 Aligned_cols=404 Identities=12% Similarity=0.113 Sum_probs=267.6
Q ss_pred HHHHHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHHhcccccccc
Q 010630 48 ALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWL 127 (505)
Q Consensus 48 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (505)
......+|.+.+++|++..+.+++.++..++.+++++++|+++| |+|||+.+++.. ++..++.++..+++++
T Consensus 184 ~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsD----R~GRR~~lii~l-il~~i~~ll~afa~s~--- 255 (742)
T TIGR01299 184 FVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLAD----KLGRKQCLLICL-SVNGFFAFFSSFVQGY--- 255 (742)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCcHHHHHHHH-HHHHHHHHHHHHHhhH---
Confidence 34556677778899999999999999999999999999999999 999999888744 4444455555565555
Q ss_pred cCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhhcccccccccccc
Q 010630 128 LGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILP 207 (505)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l~~~~~~~~~~~ 207 (505)
+.+++++++.|++.+...+...+++.|++|+++|+ +..++...+..+|.++++.++..+... +.
T Consensus 256 ------------~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg--~~~g~~~~~~~iG~ila~~la~~il~~--~G 319 (742)
T TIGR01299 256 ------------GFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRG--EHLSWLCMFWMIGGIYAAAMAWAIIPH--YG 319 (742)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHh--cc
Confidence 78888999999999999999999999999999999 999999999999999988776542110 00
Q ss_pred ccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCc-------------------c---------
Q 010630 208 FTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFS-------------------E--------- 259 (505)
Q Consensus 208 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~-------------------~--------- 259 (505)
+...........+||+.+++.++.. +..++..+++||+|+....+.+.++ .
T Consensus 320 ~~~~~g~~~~~~gWR~l~~i~~lp~-ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~ 398 (742)
T TIGR01299 320 WSFQMGSAYQFHSWRVFVIVCAFPC-VFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIK 398 (742)
T ss_pred chhccccccccccHHHHHHHHHHHH-HHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHH
Confidence 0000000011237999888877544 4445566778998764211110000 0
Q ss_pred c---CC-----CCCcc--------hHH----HHHHHHHHHHhcc-cHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHH---
Q 010630 260 E---GH-----EQSSD--------VHE----AFLWELFGTFRYF-SGTIWIILIVTALTWLGWFPFLLFDTDWMGRE--- 315 (505)
Q Consensus 260 ~---~~-----~~~~~--------~~~----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 315 (505)
. ++ ++... ..+ ..+.++++.++.. .+..+.+++..+...++++.+..|+|..+.+.
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~wf~~~~~yygl~~w~P~~~~~~~~~ 478 (742)
T TIGR01299 399 TIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVWFTLSFGYYGLSVWFPDMIKHLQAD 478 (742)
T ss_pred HhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00 00000 000 0011222222221 13334455555666667777888888765321
Q ss_pred Hh-------CC----------CCC--------------------------------------Ccc---------------
Q 010630 316 IY-------GG----------EPN--------------------------------------EGQ--------------- 325 (505)
Q Consensus 316 ~~-------~~----------~~~--------------------------------------~~~--------------- 325 (505)
-+ +. +.. ...
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~ 558 (742)
T TIGR01299 479 DYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFEN 558 (742)
T ss_pred HHHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchhhhhccc
Confidence 00 00 000 000
Q ss_pred -----------------------cccccc-------hhhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Q 010630 326 -----------------------NYATGV-------RMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALC 375 (505)
Q Consensus 326 -----------------------~~~~~~-------~~~~~~~~~~~~~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~ 375 (505)
+.+... ........+.+++.+++.++.++++||+|||+++.++.++.+++
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~ 638 (742)
T TIGR01299 559 TDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCIS 638 (742)
T ss_pred cchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 000000 00112233456778899999999999999999999999888888
Q ss_pred HHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHH
Q 010630 376 FLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIV 455 (505)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i 455 (505)
.+++.+.. +....++..++.++..+...+..+++++|.+|+ +.||+++|+.+....+|.++
T Consensus 639 ~ll~~~~~-----------------s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt--~~Rgta~Gi~~~~~rlGaii 699 (742)
T TIGR01299 639 CFFLSFGN-----------------SESAMIALLCLFGGLSIAAWNALDVLTVELYPS--DKRATAFGFLNALCKAAAVL 699 (742)
T ss_pred HHHHHHHc-----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH--HHHHHHHHHHHHHHHHHHHH
Confidence 87776652 234445555666777777777888999999999 99999999999999999999
Q ss_pred HHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHhccCCCCC
Q 010630 456 VSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPRSSAQ 499 (505)
Q Consensus 456 ~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (505)
+|.++|.+.+.. ....|++++++.++++++.+ ..||++.+
T Consensus 700 gp~i~g~L~~~~---~~~pf~i~a~~lll~~ll~~-~LPET~~~ 739 (742)
T TIGR01299 700 GILIFGSFVGIT---KAAPILFASAALACGGLLAL-KLPDTRGQ 739 (742)
T ss_pred HHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHH-hCCCCccc
Confidence 999999888752 34567777777777665555 44776543
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-30 Score=250.82 Aligned_cols=370 Identities=15% Similarity=0.186 Sum_probs=260.2
Q ss_pred HHHHHHHHHHHHHHHhhhhHH-HHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHH
Q 010630 38 SVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVL 116 (505)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~ 116 (505)
...++.+..+.....+++++. +++|+++.++|++.++..+.+++.+|+.|+++||+++|+||||++++.+.....++.+
T Consensus 6 ~g~~~~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~ 85 (437)
T TIGR00792 6 FGDFGNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLV 85 (437)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHH
Confidence 344556666777777777665 6799999999999999999999999999999999999999999988877777777776
Q ss_pred HHhcccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhccc-ccccchhhHhHHHHHHHHHHHHHHhh
Q 010630 117 LIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTG-KDHRRTRVANAYFSLFMAVGNILGYA 195 (505)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~~~g~~ig~~ 195 (505)
+++..++. . .....+++++.+.+.+++.+....+..++.+|+.+ +++|+ +..++.+....+|..+++.
T Consensus 86 ~~~~~~~~--------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~--~~~~~~~~~~~~g~~l~~~ 154 (437)
T TIGR00792 86 LLFTTPDF--------S-ATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERE--SLSTFRRFGATLGGLLVAV 154 (437)
T ss_pred HHHhCCCC--------C-cchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 66665543 1 11234566667777888888888999999999985 56787 8999988888888877766
Q ss_pred ccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCCCCCcchHHHHHHH
Q 010630 196 TGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWE 275 (505)
Q Consensus 196 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (505)
+.+.+. ..... .....+|++.+.+.+++..+..++..+..||++++.+++ +++ +.+..+.
T Consensus 155 ~~~~l~-----~~~~~---~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~-------~~~-----~~~~~~~ 214 (437)
T TIGR00792 155 IVLPLV-----SYFGG---GDDKFGWFMFALVLALIGVVSLIICFFGTKERYSEIPKN-------IEK-----KLSLKQI 214 (437)
T ss_pred HHHHHH-----HHhCC---CcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCCCCcc-------ccc-----CCCHHHH
Confidence 543311 00000 011238999999998888888777777788765221110 000 0112233
Q ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 010630 276 LFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKL 355 (505)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l 355 (505)
+++.+++ |+++.+++..++.+.+......+.+.|. ++.++ +. ...........+..+++.++.+++
T Consensus 215 ~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~----------~~~~~~~~~~~i~~ii~~~~~~~l 280 (437)
T TIGR00792 215 FKALFKN--DQLLILCLAYLFYNLAFNIKNGVQVYYF-TYVLG-DP----------ELFSYMGSIAIVAGLIGVLLFPRL 280 (437)
T ss_pred HHHHhCC--HHHHHHHHHHHHHHHHHHHHcchhheeE-eeecC-Ch----------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566 7888777777766665554433333332 22111 00 011122233567778888999999
Q ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhcc--
Q 010630 356 CRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTES-- 433 (505)
Q Consensus 356 ~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-- 433 (505)
.||+|+|+.+..+..+.+++.+.+.+. +. +.+...+..++.|++.+...+..+++++|..|.
T Consensus 281 ~~r~g~~~~~~~~~~~~~~~~~~~~~~--------------~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 344 (437)
T TIGR00792 281 VKKFGRKILFAGGILLMVLGYLIFFFA--------------GS--NLPLILVLIILAGFGQNFVTGLVWALVADTVDYGE 344 (437)
T ss_pred HHHhCcHHHHHHHHHHHHHHHHHHHHc--------------ch--hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 999999999988888877776665543 11 345556667778888888888889999988763
Q ss_pred ---cccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhc
Q 010630 434 ---LGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFG 468 (505)
Q Consensus 434 ---~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g 468 (505)
.++.+|.++|+.++...+++.+++.+.|.+.+..|
T Consensus 345 ~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G 382 (437)
T TIGR00792 345 WKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIG 382 (437)
T ss_pred hhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 13678999999999999999999999999999875
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.1e-29 Score=245.90 Aligned_cols=379 Identities=15% Similarity=0.143 Sum_probs=262.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHhCCCchh-----HHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHH
Q 010630 35 KVASVAGGIQFGWALQLSLLTPYVQELGIPHAW-----ASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAI 109 (505)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~-----~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~ 109 (505)
......+....++....+++|.+.+++|.+..+ .|++.++..+...+++|+.|+++| |+|||+.++. +.+
T Consensus 18 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~d----r~g~r~~~~~-~~~ 92 (408)
T PRK09874 18 VAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLAD----RKGRKIMLLR-SAL 92 (408)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhCcHHHHHH-HHH
Confidence 333444555667777788999999999988654 488899999999999999999999 9999988877 444
Q ss_pred HHHHHHHHHhcccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHH
Q 010630 110 SIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVG 189 (505)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 189 (505)
...++.+++...+++ +.+++.+.+.|++.+ ..+...+++.|..|+++|+ +++++......+|
T Consensus 93 ~~~~~~~~~~~~~~~---------------~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g 154 (408)
T PRK09874 93 GMGIVMVLMGLAQNI---------------WQFLILRALLGLLGG-FVPNANALIATQVPRNKSG--WALGTLSTGGVSG 154 (408)
T ss_pred HHHHHHHHHHHHhhH---------------HHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhh--HHHHHHHHHHHHH
Confidence 455555555555444 677788888887754 4566778899999999999 9999999999999
Q ss_pred HHHHhhccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCCCCCcchH
Q 010630 190 NILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVH 269 (505)
Q Consensus 190 ~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 269 (505)
..+++.+++.+.... +|++.|++.+++.++..+...+.+||++++.+++ +
T Consensus 155 ~~~~~~~~~~l~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~ 204 (408)
T PRK09874 155 ALLGPLAGGLLADSY---------------GLRPVFFITASVLFLCFLVTLFCIRENFQPVSKK---------------E 204 (408)
T ss_pred HHHHHHHHHHHHHHh---------------CHHHHHHHHHHHHHHHHHHHHHHhccCcccccch---------------h
Confidence 999998887633222 8999999988777777666666677654221111 0
Q ss_pred HHHHHHHHHHHhcccHHHHH-HHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHH
Q 010630 270 EAFLWELFGTFRYFSGTIWI-ILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGIT 348 (505)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 348 (505)
+...++..+.+++ ++++. +....+...........+.+.|..+. .+ +... .+... .......++...++
T Consensus 205 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~-----~~~~~-g~~~~~~~l~~~~~ 274 (408)
T PRK09874 205 MLHMREVVTSLKN--PKLVLSLFVTTLIIQVATGSIAPILTLYVREL-AG-NVSN-----IAFIS-GMIASVPGVAALLS 274 (408)
T ss_pred hhHHHHHHHhCcC--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hc-cchH-----HHHHH-HHHHHHHHHHHHHH
Confidence 1112334445555 34333 32323333333333344455555322 11 1100 00001 11122245566677
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHh
Q 010630 349 SVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVS 428 (505)
Q Consensus 349 ~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 428 (505)
.+..+++.||++||+.+..+..+..++.+...... +.+...+...+.|++.+...+...+++.
T Consensus 275 ~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 337 (408)
T PRK09874 275 APRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQ-----------------TPLQLGILRFLLGAADGALLPAVQTLLV 337 (408)
T ss_pred HHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhc-----------------cHHHHHHHHHHHHhhhHhhHHHHHHHHH
Confidence 88899999999999998888777666665544432 3455666677788888888888788888
Q ss_pred hhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHhccCCC
Q 010630 429 IRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPRSS 497 (505)
Q Consensus 429 ~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (505)
+..|+ +++|+.++..+....+|..+||.++|.+.+..| +...|.+.+++.+++.+..+...++++
T Consensus 338 ~~~~~--~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g--~~~~f~~~~~~~l~~~~~~~~~~~~~~ 402 (408)
T PRK09874 338 YNSSN--QIAGRIFSYNQSFRDIGNVTGPLMGAAISANYG--FRAVFLVTAGVVLFNAVYSWNSLRRRR 402 (408)
T ss_pred HhCCc--ccceeeehHHHHHHHHHHHhhHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88887 899999999999999999999999999999876 677888888888887776665544443
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.98 E-value=1e-29 Score=241.42 Aligned_cols=356 Identities=13% Similarity=0.082 Sum_probs=249.0
Q ss_pred HHHHHHHHHHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHHhccc
Q 010630 43 IQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSA 122 (505)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~ 122 (505)
.+..+....+.+|.+.+++|+|+.+.|++.+.+.+++.+++++.|+++| |+|||+.++. .......+.......+
T Consensus 3 ~~~~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~D----r~grr~~~~~-~~~~~~~~~~~~~~~~ 77 (368)
T TIGR00903 3 SQAIWVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLD----RAFKRWFLFG-SLATFAAAAGRLLDPF 77 (368)
T ss_pred hhHHHHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HccchHHHHH-HHHHHHHHHHHHHHhc
Confidence 4567788888999999999999999999999999999999999999999 9998876543 4444444333222223
Q ss_pred ccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhhccccccc
Q 010630 123 DIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGW 202 (505)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l~~~~~~ 202 (505)
++ ..+++.|++.|++.+. ..+..+.++|++|+++|+ +++++......+|..+++.+++++..
T Consensus 78 ~~---------------~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~--~a~~~~~~~~~lG~~l~~~~~~~l~~ 139 (368)
T TIGR00903 78 NY---------------EWLLACQLLAALGQPF-LLNAFAPAASQIREERRD--LVISLLSFAMYLGIIFALAAGLKIYT 139 (368)
T ss_pred cH---------------HHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 7888999999999886 456667779999999999 99999999999999999988877433
Q ss_pred cccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCCCCCcchHHHHHHHHHHHHhc
Q 010630 203 FKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRY 282 (505)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (505)
.. +||+.|.+.+++.++..++.++.+||+|+++.+. .+ .++..+++++.+++
T Consensus 140 ~~---------------gWr~~f~~~~~l~~~~~~~~~~~lp~~p~~~~~~--------~~-----~~~~~~~~~~ll~~ 191 (368)
T TIGR00903 140 AG---------------GLQLLIIPIAAVAAAGIILVLAALPALPFQAAEG--------FG-----FKDAVKEFGALAGR 191 (368)
T ss_pred cc---------------chHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC--------cc-----hHHHHHHHHHHHcC
Confidence 22 9999999988888777777788888876432110 00 01112345667777
Q ss_pred ccHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcc-
Q 010630 283 FSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGA- 361 (505)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~~r~g~- 361 (505)
|.+|.+.+..++.....+.+..|.|.|+.+. +.+. ..+.. ..+..+.+ .+..++++||..|
T Consensus 192 --~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~~--g~s~----------~~~~~-~~l~~~~g---~~g~~~~~d~~~r~ 253 (368)
T TIGR00903 192 --KDLWIIGAILGFGVALFDNLAIWLEAALRPA--GLED----------IAGDA-VALAILAG---LIGVAVIPDRVARA 253 (368)
T ss_pred --hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCh----------HHHHH-HHHHHHHH---HHHHHHhhHHhhhh
Confidence 8889988888888888888888999998431 2111 11111 11122223 3334667777644
Q ss_pred --hHHHHH-HHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhcccccch
Q 010630 362 --GFIWGI-SNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQ 438 (505)
Q Consensus 362 --~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (505)
|+.... ..++.++......... +....+....+.+++.....+..+++.+|.+|+ +.|
T Consensus 254 ~~r~~~~~~~~~~~a~~~~~~~~~~-----------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~--~~r 314 (368)
T TIGR00903 254 GLRSIYIRAAALLIAAFFLALAFEL-----------------NRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDK--ELH 314 (368)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHcc-----------------ccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcch--hhc
Confidence 333332 3333333333332221 122334444555565655666677899999999 999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHH
Q 010630 439 GLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAI 490 (505)
Q Consensus 439 g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 490 (505)
|++.|+.+...++++.++|.+.+.+.. + ....|.+.++..+++++...
T Consensus 315 gt~~G~~~~~g~~~~~~~~~~~~~~~~--~--~~~~f~~~~~~~~i~~~~~~ 362 (368)
T TIGR00903 315 GKAAGAIGFTSRAISVALALAAMLFIS--S--AEAYFTFLAILITIAFAIAL 362 (368)
T ss_pred CcccchhhHHHHHHHHHHHHHHHHHhc--C--HHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988773 2 44567777777777766654
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.2e-29 Score=246.17 Aligned_cols=380 Identities=13% Similarity=0.092 Sum_probs=262.0
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhH
Q 010630 26 AKVPLRKLLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFI 104 (505)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~ 104 (505)
++.+.++.+.++...++.+..+.....+++.|. +++|+|+.++|.+..+..+.+++.+|+.|+++||+++|+||||+++
T Consensus 4 ~~l~~~~~~~yg~g~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~i 83 (444)
T PRK09669 4 SQLTTKDKIGYGLGDTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYL 83 (444)
T ss_pred CcccHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhH
Confidence 456788888888877777766666666766665 7899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccc-cccchhhHhHHHH
Q 010630 105 VCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGK-DHRRTRVANAYFS 183 (505)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~ 183 (505)
+.+.+...++..+.+..|+. +.....+++++...+.+.+.+....+..++.+|+.++ ++|. +..++..
T Consensus 84 l~~~~~~~i~~~l~f~~p~~---------~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~--~l~~~r~ 152 (444)
T PRK09669 84 LWFAIPFGVVCLLTFYTPDF---------GATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERH--SLQSWRF 152 (444)
T ss_pred HHHHHHHHHHHHHHHhCCCC---------CcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHH--HHHHHHH
Confidence 87766666666555555542 1123345566666677777888889999999999854 6677 7888888
Q ss_pred HHHHHHHHHHhhccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCCC
Q 010630 184 LFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHE 263 (505)
Q Consensus 184 ~~~~~g~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 263 (505)
...++|..+++.+...+. ..... .....+|+..+.+.+++..++.++.++..||++++++++
T Consensus 153 ~~~~~G~~i~~~~~~pl~-----~~~~~---~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e~~~~~~~~---------- 214 (444)
T PRK09669 153 ALSFIGGLIVSVIALPLV-----DILGK---GDEQKGYFYAMMVMGLLGVVLFFCCFFMTKERYTPEVDN---------- 214 (444)
T ss_pred HHHHHHHHHHHHHHHHHH-----HHhCC---CchhhhHHHHHHHHHHHHHHHHHHHhCCeEEecCCCCcC----------
Confidence 888888887776543210 00000 011237888888888777777666666677653321100
Q ss_pred CCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHH
Q 010630 264 QSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSV 343 (505)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (505)
+.+..++++..+|| |+++.++...++...+........ .|+.++..+. . ...........+
T Consensus 215 -----~~~~~~~~~~~~~n--~~~~~l~~~~~~~~~~~~~~~~~~-~y~~~~~~~~----------~-~~~~~~~~~~~i 275 (444)
T PRK09669 215 -----SSSVWKDLKLLLGN--SQWRIMFIFNVVLLTAVVTRGGAT-LYYVNYVLLR----------P-DLATLFLVTGMI 275 (444)
T ss_pred -----CCCHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHhhhh-heeeeeecCC----------H-HHHHHHHHHHHH
Confidence 11233456666777 778877766666554443322222 2221221110 0 111122223445
Q ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhch
Q 010630 344 VLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVP 423 (505)
Q Consensus 344 ~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 423 (505)
..+++.++++++.||+|+|+.+..+.++.++......+.. ++ +.+..++..++.|++.+...+..
T Consensus 276 ~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~-------------~~--~~~~~~~~~~i~g~~~~~~~~~~ 340 (444)
T PRK09669 276 AGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIP-------------PS--NVWLIFALNILFNFIQNLTTPLQ 340 (444)
T ss_pred HHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhC-------------cc--hHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667788999999999999999887766554443333331 11 45556677778899999999999
Q ss_pred hHhHhhhhccc-----ccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhc
Q 010630 424 YALVSIRTESL-----GLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFG 468 (505)
Q Consensus 424 ~~~~~~~~~~~-----~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g 468 (505)
+++++|..+.+ ++..|..+|..+.+..+|+.+++.+.|.+.+..|
T Consensus 341 ~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~G 390 (444)
T PRK09669 341 WSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVD 390 (444)
T ss_pred HHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999998632 2556888999999999999999999999999876
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.2e-29 Score=239.28 Aligned_cols=366 Identities=14% Similarity=0.096 Sum_probs=249.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHH
Q 010630 29 PLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGA 108 (505)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~ 108 (505)
.++.+.......+............+|++.+++|.++.+.++..++..+...+++++.|+++| |+|||+.++....
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~D----r~grr~~~~~~~~ 93 (394)
T PRK10213 18 NWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQ----ATDRRYVVILFAV 93 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc----ccCcHHHHHHHHH
Confidence 344444443333333333335556788899999999999999999999999999999999999 9999988877444
Q ss_pred HHHHHHHHHHhcccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHH
Q 010630 109 ISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAV 188 (505)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 188 (505)
+ ..++.++..+.+++ +.+++.|.+.|++.+...+...+++.|++|+++|+ +++++.....++
T Consensus 94 ~-~~~~~~~~~~~~~~---------------~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~--~a~~~~~~~~~~ 155 (394)
T PRK10213 94 L-LTLSCLLVSFANSF---------------SLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVP--KALSVIFGAVSI 155 (394)
T ss_pred H-HHHHHHHHHHHChH---------------HHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHH--HHHHHHHHHHHH
Confidence 4 55566666666665 78889999999999999999999999999999999 999999999999
Q ss_pred HHHHHhhccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCCCCCcch
Q 010630 189 GNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDV 268 (505)
Q Consensus 189 g~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 268 (505)
|..+++.+++.+.... +||+.|++.+++.+++.++.....||+++++++ .
T Consensus 156 g~~ig~~l~~~l~~~~---------------gw~~~f~~~~~l~~~~~l~~~~~~p~~~~~~~~---------------~ 205 (394)
T PRK10213 156 ALVIAAPLGSFLGELI---------------GWRNVFNAAAVMGVLCIFWIIKSLPSLPGEPSH---------------Q 205 (394)
T ss_pred HHHHHHHHHHHHHhhc---------------CHHHHHHHHHHHHHHHHHHHHHHCCCCCccccc---------------c
Confidence 9999999988743322 899999998866665554444445554311100 0
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHH
Q 010630 269 HEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGIT 348 (505)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 348 (505)
.+ +.++.+++ |.++...+..++..........+.++++.++ ++.++. .........++...++
T Consensus 206 ~~----~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~----------~~g~~~~~~~~~~iig 268 (394)
T PRK10213 206 KQ----NTFRLLQR--PGVMAGMIAIFMSFAGQFAFFTYIRPVYMNL-AGFGVD----------GLTLVLLSFGIASFVG 268 (394)
T ss_pred hh----HHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCChh----------HHHHHHHHHHHHHHHH
Confidence 11 22345565 7777665554444444444445553433222 232221 1123334456777888
Q ss_pred HHHHHHHHHHhcchHHHHHHHHH-HHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhH
Q 010630 349 SVLMEKLCRKWGAGFIWGISNIL-MALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALV 427 (505)
Q Consensus 349 ~~~~g~l~~r~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 427 (505)
.++.+++.||.++ +.+..+..+ ....+.+..... +.+......++.|++.+...+...+++
T Consensus 269 ~~~~~~l~~r~~~-~~l~~~~~~~~~~~~~l~~~~~-----------------~~~~~~~~~~l~G~~~~~~~~~~~~~~ 330 (394)
T PRK10213 269 TSLSSFILKRSVK-LALAGAPLVLAVSALVLTLWGS-----------------DKIVATGVAIIWGLTFALVPVGWSTWI 330 (394)
T ss_pred HHHHHHHHhccch-hHHHHHHHHHHHHHHHHHHHhh-----------------hHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 8999999999544 443333333 333333333221 345566677788888888888888888
Q ss_pred hhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHH
Q 010630 428 SIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGG 486 (505)
Q Consensus 428 ~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 486 (505)
.+..|+ ++++..+......+++..+|+.++|++.|..| ....+..++.+.++..
T Consensus 331 ~~~~~~---~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g--~~~~~~~~~~~~~~~~ 384 (394)
T PRK10213 331 TRSLAD---QAEKAGSIQVAVIQLANTCGAAIGGYALDNIG--LTSPLMLSGTLMLLTA 384 (394)
T ss_pred HHHCcc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--hhhHHHHHHHHHHHHH
Confidence 888774 46677777777888999999999999999876 5555666555544444
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-29 Score=249.97 Aligned_cols=378 Identities=13% Similarity=0.087 Sum_probs=240.0
Q ss_pred HHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHHhcccccccccCC
Q 010630 51 LSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGD 130 (505)
Q Consensus 51 ~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (505)
...+|.+.++ |+|..+.+++.+...++..+++++.|+++| |+|||+.++.. .+...++.+.+.+.+..
T Consensus 49 ~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~D----r~g~k~~l~~~-~~~~~i~~~~~~~~~~~------ 116 (452)
T PRK11273 49 ALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSD----RSNPRVFLPAG-LILAAAVMLFMGFVPWA------ 116 (452)
T ss_pred HHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhh----ccCCchhHHHH-HHHHHHHHHHHHhhhcc------
Confidence 3455655566 999999999999999999999999999999 99999987774 44444454555443211
Q ss_pred CCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHH-HHhhcccccccccccccc
Q 010630 131 RGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNI-LGYATGSFSGWFKILPFT 209 (505)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~-ig~~l~~~~~~~~~~~~~ 209 (505)
....+.+++.+.+.|++.+..+++..+.+.|++|+++|+ +++++.+...++|.. .++.++......
T Consensus 117 -----~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~--~~~~~~~~~~~~g~~~~~~l~~~~~~~~------ 183 (452)
T PRK11273 117 -----TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERG--GIVSVWNCAHNVGGGLPPLLFLLGMAWF------ 183 (452)
T ss_pred -----cccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHH--HHHHHHHHHHHhhhhHHHHHHHHHHHHh------
Confidence 012356677788889998888888888899999999999 999999888888864 444432221111
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCC---cccCCCCCcchHHHHHHHH-H-HHHhccc
Q 010630 210 LTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPF---SEEGHEQSSDVHEAFLWEL-F-GTFRYFS 284 (505)
Q Consensus 210 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~-~~~~~~~ 284 (505)
.+||+.|++.+++..+..++..+++||++++...+++++ +.++..+..++++...++. . ..+++
T Consensus 184 ---------~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 252 (452)
T PRK11273 184 ---------NDWHAALYMPAFAAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKHEQELTAKQIFMQYVLPN-- 252 (452)
T ss_pred ---------ccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCChhhhhhccccccccccCCCccHHHHHHHHHHcC--
Confidence 289999999887777777777777887765321111100 0000000000000111221 1 23455
Q ss_pred HHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHh--cch
Q 010630 285 GTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKW--GAG 362 (505)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~~r~--g~~ 362 (505)
+.+|...+..++..........|.|.|+.++ ++.+.. ..........+..+++.++.|+++||+ +||
T Consensus 253 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~-~g~s~~----------~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~ 321 (452)
T PRK11273 253 KLLWYIAIANVFVYLLRYGILDWSPTYLKEV-KHFALD----------KSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNR 321 (452)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 7788877777777666667777889888543 222211 112333345667778899999999999 444
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhcccccchhHH
Q 010630 363 FIW-GISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLS 441 (505)
Q Consensus 363 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 441 (505)
+.. .....+..++.+.+... +.. +.+...+...+.|............+..|..|+ +.+|++
T Consensus 322 ~~~~~~~~~l~~~~~~~~~~~--------------~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~--~~~g~~ 384 (452)
T PRK11273 322 GATGVFFMTLVTIATIVYWLN--------------PAG-NPTVDMACMIVIGFLIYGPVMLIGLHALELAPK--KAAGTA 384 (452)
T ss_pred chHHHHHHHHHHHHHHHHHHh--------------ccc-ChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCh--hhhhhH
Confidence 432 22222333333322221 110 122223333334433222222334566789998 999999
Q ss_pred HHHHHHHHHHHHHH-HHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHhcc
Q 010630 442 LGVLNLAIVIPQIV-VSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIP 494 (505)
Q Consensus 442 ~g~~~~~~~~~~~i-~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (505)
+|+.+....+++.+ +|.+.|.+.|..| +...|.+.+++++++++......+
T Consensus 385 ~g~~~~~~~~g~~~~g~~v~g~l~~~~g--~~~~f~~~~~~~~~~~~~~~~~~~ 436 (452)
T PRK11273 385 AGFTGLFGYLGGSVAASAIVGYTVDFFG--WDGGFMVMIGGSILAVILLIVVMI 436 (452)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHhc--chHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999988888765 7999999999987 677887777777777666654443
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.1e-30 Score=248.77 Aligned_cols=389 Identities=9% Similarity=-0.058 Sum_probs=253.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHH
Q 010630 29 PLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGA 108 (505)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~ 108 (505)
.++..+...+..+.............|.+.+++|.+..+.|++.+++.++..+++++.|+++| |+|||+.+.. +.
T Consensus 6 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d----r~G~r~~~~~-~~ 80 (412)
T TIGR02332 6 FRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLA----IIGARRWIAG-IM 80 (412)
T ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHH----HhChHHHHHH-HH
Confidence 344444444444444455555666677777999999999999999999999999999999999 9999998776 45
Q ss_pred HHHHHHHHHHhcccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHH
Q 010630 109 ISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAV 188 (505)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 188 (505)
+...++.++..++++. +.+++.|++.|++.+...+...+++.|++|+++|+ +++++.+....+
T Consensus 81 ~~~~~~~~~~~~~~~~---------------~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg--~~~~~~~~~~~~ 143 (412)
T TIGR02332 81 VLWGIASTATMFATGP---------------ESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRA--RANALFMIAMPV 143 (412)
T ss_pred HHHHHHHHHHHHhcCH---------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHH--HHHHHHHHHHHH
Confidence 5555566666666665 77888999999999998888889999999999999 999999999999
Q ss_pred HHHHHhhccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCC--CCCCCc-------c
Q 010630 189 GNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHD--QSAPFS-------E 259 (505)
Q Consensus 189 g~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~--~~~~~~-------~ 259 (505)
|..+++.+++++.... ... ...+||+.|.+.++..++..++.++++||+|++.+. +++++. +
T Consensus 144 g~~~~~~~~~~l~~~~---~~~------~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~ 214 (412)
T TIGR02332 144 TMALGLILSGYILALD---GLM------ALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALKEMIDND 214 (412)
T ss_pred HHHHHHHHHHHHHhCC---CCC------CccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCHHHHHHHHHHHHhc
Confidence 9999999877632100 000 012899999998877777777777788888754210 000000 0
Q ss_pred ----cCCCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhH
Q 010630 260 ----EGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGA 335 (505)
Q Consensus 260 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (505)
++.++...+.+...++.++.+++ +.+|...+..++.......+..|.|.++.+...+.+. ....
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~----------~~~~ 282 (412)
T TIGR02332 215 QLTLEQPEGAFAHAAMPQRSMLREIFT--PAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSN----------IMIG 282 (412)
T ss_pred cccccccccccccccccHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcH----------HHhH
Confidence 00000000000011122333344 6677777777766666777778889888531111111 1112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHH-HHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhh
Q 010630 336 LGLMLNSVVLGITSVLMEKLCRKWGAGFIW-GISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGG 414 (505)
Q Consensus 336 ~~~~~~~~~~~i~~~~~g~l~~r~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 414 (505)
.......+...++.++.++++||+++|+.. .....+..+++.+ .... + +....+....+.++
T Consensus 283 ~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~-~~~~-------------~---~~~~~~~~~~~~~~ 345 (412)
T TIGR02332 283 LLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLL-ASAT-------------D---HNLIQLLGIIMASM 345 (412)
T ss_pred HHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHH-HHhc-------------C---CHHHHHHHHHHHHH
Confidence 223445777888999999999999977753 3333333333221 1111 1 11111222222222
Q ss_pred HHHHHhhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHH
Q 010630 415 PLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGI 480 (505)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~ 480 (505)
+.....+.......+..|+ +++|+++|+.+....+|++++|.+.|.+.|..| ++...+.++++
T Consensus 346 g~~~~~~~~~~~~~~~~~~--~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g-~~~~~~~~~~~ 408 (412)
T TIGR02332 346 GSFSAMAIFWTTPDQSISL--QARAIAIAVINATGNIGSALSPFLIGILKDATG-SFNSGLWFVAA 408 (412)
T ss_pred HhhhhhhHHHhhcccccch--HHHHHHHHHHHHhhhhhhhhhhhhcccccccCC-CCchhHHHHHH
Confidence 2222223333444566787 899999999999999999999999999999875 35556655444
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-29 Score=245.37 Aligned_cols=356 Identities=15% Similarity=0.108 Sum_probs=250.9
Q ss_pred HHHHHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHHhcccccccc
Q 010630 48 ALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWL 127 (505)
Q Consensus 48 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (505)
+....+.|.+.+++|.|..+.+++.+++.++..+++++.|+++| |+|||+.++.. .....++.+.+.+++++
T Consensus 20 ~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d----~~G~r~~~~~~-~~~~~~~~~~~~~~~~~--- 91 (377)
T TIGR00890 20 YTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLAD----KFGPRAVAMLG-GILYGLGFTFYAIADSL--- 91 (377)
T ss_pred hhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHH----HcCccchhHHh-HHHHHHHHHHHHHHHHH---
Confidence 34456778888999999999999999999999999999999999 99999998874 45555666666666665
Q ss_pred cCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhhcccccccccccc
Q 010630 128 LGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILP 207 (505)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l~~~~~~~~~~~ 207 (505)
+.+++.+.+.|++.+..++.....+.|++| ++|+ ++.++.....++|..+++.+.+.....
T Consensus 92 ------------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~---- 152 (377)
T TIGR00890 92 ------------AALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRG--LASGIIIGGYGLGSFILSPLITSVINL---- 152 (377)
T ss_pred ------------HHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccH--HHHHHHHHhcchhHhHHHHHHHHHHhc----
Confidence 777888889999988887777888888887 5788 899999999999887765554431111
Q ss_pred ccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCCCCCcchHHHHHHHHHHHHhcccHHH
Q 010630 208 FTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTI 287 (505)
Q Consensus 208 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (505)
.+||+.|.+.+++.++..+..+++++|+++++.++++ +. ++++ ++.++.+++ +.+
T Consensus 153 -----------~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~----~~~~---~~~~~~~~~--~~~ 207 (377)
T TIGR00890 153 -----------EGVPAAFIYMGIIFLLVIVLGAFLIGYPPGQLIKTNI-----EV----SVKD---YTVWEMLRT--PQF 207 (377)
T ss_pred -----------ccHHHHHHHHHHHHHHHHHHHHHheecCchhccccCc-----cc----chhh---hhHHHHHcC--ccH
Confidence 2899999998888777777766667665432211100 00 0011 123445555 666
Q ss_pred HHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Q 010630 288 WIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGI 367 (505)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~~r~g~~~~~~~ 367 (505)
+......++..........+.++|. ++ ++.+. ...........+...++.++.+++.||+|||+.+..
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~----------~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~ 275 (377)
T TIGR00890 208 WVLYLSFFLNAVSGLLLIGLYKPYG-QS-LGLSD----------GFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSI 275 (377)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH-HH-cCCCH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 6555544444443333334444443 22 11111 111233344667788899999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhcccccchhHHHHHHHH
Q 010630 368 SNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNL 447 (505)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 447 (505)
+..+.+++..++.... .. .....+....+.+++.+...+...+++.|.+|+ +++|++.|+.+.
T Consensus 276 ~~~~~~~~~~~~~~~~--------------~~-~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~--~~~~~~~g~~~~ 338 (377)
T TIGR00890 276 VFGISAVGMAAMLFIP--------------ML-NDVLFLATVALVFFTWGGTISLFPSLVSDIFGP--ANSAANYGFLYT 338 (377)
T ss_pred HHHHHHHHHHHHHHcc--------------cc-hhHHHHHHHHHHHHHhccchhccHHHHHHHhhh--hhhhhHhHHHHH
Confidence 8888777776655442 11 122233445566777776666777889999998 999999999999
Q ss_pred HHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHH
Q 010630 448 AIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGG 486 (505)
Q Consensus 448 ~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 486 (505)
...+|+.++|.+.|.+.+..| +...|.+.+++.+++.
T Consensus 339 ~~~~g~~~~~~~~g~l~~~~g--~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 339 AKAVAGIFGGLIASHALTEIG--FEYTFIVTGAFALTSL 375 (377)
T ss_pred HHHHHHHHHHHHHHHHHhhhc--hhhHHHHHHHHHHHhc
Confidence 999999999999999999876 6667777766665543
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-29 Score=242.13 Aligned_cols=364 Identities=13% Similarity=0.052 Sum_probs=257.9
Q ss_pred HHHHHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHHhcccccccc
Q 010630 48 ALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWL 127 (505)
Q Consensus 48 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (505)
....+.+|.+.+++|+|..+.+++.+.+.++..+++++.|+++| |+|||++++. +.....++.+.+.+++++
T Consensus 26 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~d----r~G~r~~l~~-~~~l~~~~~~~~~~a~~~--- 97 (393)
T PRK09705 26 TSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQ----HVSERRSVAI-SLLLIAVGALMRELYPQS--- 97 (393)
T ss_pred hccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHH----HhCchHHHHH-HHHHHHHHHHHHHHCcch---
Confidence 44567888899999999999999999999999999999999999 9999998888 666677777778788776
Q ss_pred cCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhhcccccccccccc
Q 010630 128 LGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILP 207 (505)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l~~~~~~~~~~~ 207 (505)
+.+++.|++.|++.+...+...+++.|++| ++|+ ++++.......+|..+|+.+++++....
T Consensus 98 ------------~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~--~~~g~~~~~~~~g~~~g~~~~~~l~~~~--- 159 (393)
T PRK09705 98 ------------ALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTP--LVMGLWSAALMGGGGLGAAITPWLVQHS--- 159 (393)
T ss_pred ------------HHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccch--hHHHHHHHHHHHHHHHHHHHHHHHHHhc---
Confidence 677889999999999998888999999997 7788 9999999888888888888876532211
Q ss_pred ccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCCCCCcchHHHHHHHHHHHHhcccHHH
Q 010630 208 FTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTI 287 (505)
Q Consensus 208 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (505)
.+||+.+.+.++..++..+..+...++.++++ ++ ++ . +..+.+++ ++.
T Consensus 160 -----------~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~-~-----------~~~~~l~~--~~~ 207 (393)
T PRK09705 160 -----------ETWYQTLAWWALPAVVALFAWWWQSAREVASS-HK------TT-T-----------TPVRVVFT--PRA 207 (393)
T ss_pred -----------CCHHHHHHHHHHHHHHHHHHHHHHhcCCCccc-cC------CC-c-----------CCcccccC--HhH
Confidence 27888877665444333222222222221110 00 00 0 00122333 556
Q ss_pred HHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Q 010630 288 WIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGI 367 (505)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~~r~g~~~~~~~ 367 (505)
+.+....++...++.....+.+.++.+ ++.+... .........++.+++.++.+++.||+++|+.+..
T Consensus 208 ~~l~~~~~~~~~~~~~~~~~lp~~l~~--~g~s~~~----------ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~ 275 (393)
T PRK09705 208 WTLGVYFGLINGGYASLIAWLPAFYIE--IGASAQY----------SGSLLALMTLGQAAGALLMPAMARHQDRRKLLML 275 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCChhh----------hhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHH
Confidence 666555555566666777788888743 3333221 1233445677888999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhcccccchhHHHHHHHH
Q 010630 368 SNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNL 447 (505)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 447 (505)
+..+..++..++... +. +.... ...+.|++.+...+.......+..+++ +++|+.+|+.+.
T Consensus 276 ~~~l~~~~~~~~~~~--------------~~--~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~ 336 (393)
T PRK09705 276 ALVLQLVGFCGFIWL--------------PL--QLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQP-AIAGKLVAFMQG 336 (393)
T ss_pred HHHHHHHHHHHHHHc--------------cc--hHHHH--HHHHHHHhccchHHHHHHHHHhhcCCH-HHHHHHHHHHHH
Confidence 877776666554433 11 11112 223456666666666655666666431 688999999999
Q ss_pred HHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHhccCCCCCCC
Q 010630 448 AIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPRSSAQKP 501 (505)
Q Consensus 448 ~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (505)
...++..++|.+.|++.|..| ++...|.+.+++++++.+....+.+|++.++.
T Consensus 337 ~~~~~~~~gp~~~G~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (393)
T PRK09705 337 IGFIIAGLAPWFSGVLRSISG-NYLMDWAFHALCVVGLMIITLRFAPARFPQLW 389 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHhC-CchHHHHHHHHHHHHHHHHHHHhccccccchh
Confidence 999999999999999999986 45667777777777777777777777665543
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-28 Score=239.01 Aligned_cols=369 Identities=18% Similarity=0.205 Sum_probs=249.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHH-HHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHH
Q 010630 33 LLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISI 111 (505)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~ 111 (505)
++.+....+....+.....+.+|.+. +++|.|..+.|++.+++.+...+.+|+.|+++| |+||||.++..... .
T Consensus 17 ~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~D----r~g~r~~l~~~~~~-~ 91 (392)
T PRK12382 17 LFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLAD----QYGAKRSALQGMLA-C 91 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHH----hhcchHHHHHHHHH-H
Confidence 34444444555556677778888765 789999999999999999999999999999999 99999988774433 3
Q ss_pred HHHHH---HHhcccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHH
Q 010630 112 AVAVL---LIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAV 188 (505)
Q Consensus 112 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 188 (505)
.++.+ .....+. ....+++.+++.|.+.|++.+...+...+++.|++|+++|+ +++++.+...++
T Consensus 92 ~~~~~~~~~~~~~~~----------~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~--~a~~~~~~~~~~ 159 (392)
T PRK12382 92 GLAGLAYLLAAILPV----------SAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSG--KVMSWNGMAMYG 159 (392)
T ss_pred HHHHHHHHhhhcccc----------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccc--hhhhHHHHHHHH
Confidence 33222 1111111 11234477889999999999988888889999999999999 999999999999
Q ss_pred HHHHHhhccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCCCCCcch
Q 010630 189 GNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDV 268 (505)
Q Consensus 189 g~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 268 (505)
|..+|+.+++++.... +|++.+.+..+..++.. ......||.++ ++ + +
T Consensus 160 g~~~g~~~~~~l~~~~---------------g~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~-------~-~----- 207 (392)
T PRK12382 160 ALAAGAPLGLLLHSHF---------------GFAALALTTMVLPLLAW-AFNGTVRKVPA---HA-------G-E----- 207 (392)
T ss_pred HHHHHHHHHHHHHhcc---------------ChHHHHHHHHHHHHHHH-HHHHhccCCCC---Cc-------c-c-----
Confidence 9999999887643322 78876665443322221 11111222111 00 0 0
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHH
Q 010630 269 HEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGIT 348 (505)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 348 (505)
++..++..+.+.. +.+ ..++..........+.+.|+.+. + + ...........+..+++
T Consensus 208 -~~~~~~~~~~~~~--~~~-----~~~l~~~~~~~~~~~~~~~~~~~--~--------~----~~~~~~~~~~~~~~~~~ 265 (392)
T PRK12382 208 -RPSLWSVVGLIWK--PGL-----GLALQGVGFAVIGTFVSLYFASK--G--------W----AMAGFTLTAFGGAFVLM 265 (392)
T ss_pred -CchHHHHHHHHHH--hHH-----HHHHHHHHHhHHHHHHHHHHHhc--C--------C----chhHHHHHHHHHHHHHH
Confidence 0011122221111 111 11122233334445556665321 1 1 11123333456666788
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHh
Q 010630 349 SVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVS 428 (505)
Q Consensus 349 ~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 428 (505)
.++.+++.||+|+|+.+..+..+.+++.+++.... +.+..++...+.|++.+...+...+...
T Consensus 266 ~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~ 328 (392)
T PRK12382 266 RVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAP-----------------TAWVALAGAALTGAGCSLIFPALGVEVV 328 (392)
T ss_pred HHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcc-----------------cHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 89999999999999998888887777776655441 3455566677788888877777777888
Q ss_pred hhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHhc
Q 010630 429 IRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAI 493 (505)
Q Consensus 429 ~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (505)
+..|+ +++|+++|+.+....+++.++|.+.|.+.|..| +...|.+.+++.+++.+..+...
T Consensus 329 ~~~~~--~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~ 389 (392)
T PRK12382 329 KRVPS--QVRGTALGGYAAFQDIAYGVSGPLAGMLATSFG--YPSVFLAGAISAVLGIIVTILSF 389 (392)
T ss_pred HhcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--chHHHHHHHHHHHHHHHHHHhhc
Confidence 88888 999999999999999999999999999999976 67788888877777776655443
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-28 Score=228.75 Aligned_cols=387 Identities=17% Similarity=0.246 Sum_probs=290.3
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcch
Q 010630 24 ARAKVPLRKLLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRP 102 (505)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~ 102 (505)
...+.+.++.+.++...++.++.+.....++..|. +..|+++..+|.+..+..+.+++.+|+.|.++||+++|+||||+
T Consensus 5 ~~~kLs~~eki~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP 84 (467)
T COG2211 5 SSKKLSLKEKIGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRP 84 (467)
T ss_pred ccCcccHHHHHhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccH
Confidence 34578889999999999999888888888887765 77999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhcccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHH
Q 010630 103 FIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYF 182 (505)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 182 (505)
+++.+.+...+...+++.+++. +......+..+...+.+++++....|..++.+|++++.++++ +..++.
T Consensus 85 ~lL~g~ip~~i~~~l~F~~p~~---------~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~-~l~s~R 154 (467)
T COG2211 85 WLLWGAIPFAIVAVLLFITPDF---------SMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERA-SLTSWR 154 (467)
T ss_pred HHHHHhHHHHHHHHHHHcCCCc---------ccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHH-HHHHHH
Confidence 9998888788777777777764 112333556677778889999999999999999998755443 789999
Q ss_pred HHHHHHHHHHHhhcccccccccccccccccccc-ccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccC
Q 010630 183 SLFMAVGNILGYATGSFSGWFKILPFTLTSACN-VDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEG 261 (505)
Q Consensus 183 ~~~~~~g~~ig~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 261 (505)
....++|..+...+... +.....+ +...+|+..-.+.+++..+..+++++.++|++.+..+.++
T Consensus 155 ~~~~~~g~~l~~~~~~p---------lv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~------ 219 (467)
T COG2211 155 MVFASLGGLLVAVLFPP---------LVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTKT------ 219 (467)
T ss_pred HHHHHHHHHHHHHHHHH---------HHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCcc------
Confidence 99999987766555322 1111111 1134788888888888888888888888888763322210
Q ss_pred CCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHH
Q 010630 262 HEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLN 341 (505)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (505)
..+++...++...++| |+++.+++..++.+.+..........|. +...+.+. ......+...
T Consensus 220 -----~~~~~~~~~~~~~~~N--rp~~~~l~~~l~~~~~~~i~~s~~~yy~-~y~lg~~~----------l~~~~~~~~~ 281 (467)
T COG2211 220 -----GVKLKLKDSFLLIFKN--RPLLLLLLMNLLLFIAFNIRGSIMVYYV-TYVLGDPE----------LFAYLLLLAS 281 (467)
T ss_pred -----cccccHHHHHHHHHcc--chHHHHHHHHHHHHHHHHHHhhhhheeE-EEEcCChH----------HHHHHHHHHH
Confidence 0112223344456677 7888887777776665444333333332 11111110 1222334445
Q ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhh
Q 010630 342 SVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYS 421 (505)
Q Consensus 342 ~~~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 421 (505)
....+++.++.+++.+|+|+|+++.++.++.+++.+++.+. | .++.+..++..++.+++.+...+
T Consensus 282 ~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~--------------~-~~~~~l~~~~~~i~~~g~~~~~~ 346 (467)
T COG2211 282 GAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFT--------------P-AGSVVLIVVALIIAGVGTGIANP 346 (467)
T ss_pred HHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhh--------------c-CcchHHHHHHHHHHHHHhhcccc
Confidence 55566668999999999999999999999999999888887 3 12566777777888999999999
Q ss_pred chhHhHhhhhccc-----ccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhc
Q 010630 422 VPYALVSIRTESL-----GLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFG 468 (505)
Q Consensus 422 ~~~~~~~~~~~~~-----~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g 468 (505)
.++++++|..+.+ +|..|..+|.++.+..+|.+++..+.|++.+..|
T Consensus 347 l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~G 398 (467)
T COG2211 347 LPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIG 398 (467)
T ss_pred ccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999987753 4788999999999999999999999999999876
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.2e-29 Score=239.28 Aligned_cols=363 Identities=12% Similarity=0.096 Sum_probs=250.3
Q ss_pred HHHHHHHHHHHHHhhhhHH-HHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHH
Q 010630 40 AGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLI 118 (505)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~ 118 (505)
.+...++.....+.+|.+. +++|.|+.+.|++.+++.+...+.+|+.|+++| |+||||.++..+.+...++.+++
T Consensus 6 ~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~D----r~g~r~~~~~~~~~~~~~~~~~~ 81 (375)
T TIGR00899 6 AFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSD----YQGDRKGLILFCCLLAALACLLF 81 (375)
T ss_pred HHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh----ccCCchHHHHHHHHHHHHHHHHH
Confidence 4455567777788888876 689999999999999999999999999999999 99999887765666555555556
Q ss_pred hcccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhH--hHHHHHHHHHHHHHHhhc
Q 010630 119 GLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVA--NAYFSLFMAVGNILGYAT 196 (505)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~~~~~g~~ig~~l 196 (505)
.+++++ +.+++.+++.+.+.+...+...++..|..|+++|+ +. .+......++|..+|+.+
T Consensus 82 ~~~~~~---------------~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~ig~~~ 144 (375)
T TIGR00899 82 AWNRNY---------------FLLLVLGVLLSSFASTANPQLFALAREHADRTGRE--AVMFSSVMRAQISLAWVIGPPL 144 (375)
T ss_pred HhcchH---------------HHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchh--hHHHHHHHHHHHhHHHHHhhhH
Confidence 565554 56666777777777777777788889988877766 44 577777888999999988
Q ss_pred cccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCCCCCcchHHHHHHHH
Q 010630 197 GSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWEL 276 (505)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (505)
++.+.... +||+.|++.+++.++..++.++.+||.++++.+++ + + .+.
T Consensus 145 ~~~l~~~~---------------~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-~----------~~~ 192 (375)
T TIGR00899 145 AFWLALGF---------------GFTVMFLTAALAFVLCGVLVWLFLPSYPRGAPGAL------T-R----------LEV 192 (375)
T ss_pred HHHHHHhc---------------ccHHHHHHHHHHHHHHHHHHHHhCCCcccCccccc------C-c----------chh
Confidence 87633222 89999999988777777777677787654321110 0 0 011
Q ss_pred HHHHhcccHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 010630 277 FGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLC 356 (505)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~ 356 (505)
.+..++ |+++.+....++.+........+.+.|+.++ ++.++.. .............++.++.+++.
T Consensus 193 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~----------~g~~~~~~~~~~~~~~~~~g~l~ 259 (375)
T TIGR00899 193 RGLLAS--RDTRLLFVACTLMWGCNILYIINMPLLIIHE-LGLPDKL----------AGLMMGTAAGLEIPFMLLAGYLI 259 (375)
T ss_pred hhhhcC--cchHHHHHHHHHHHHHHHHHHhhhHHHHHHH-cCCCHHH----------HHHHHHHHHHHHHHHHHhHHHHH
Confidence 123344 5555544444444443334444556665332 3322211 11222223444566778999999
Q ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhccccc
Q 010630 357 RKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGL 436 (505)
Q Consensus 357 ~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 436 (505)
||+|+|+.+..+.++..+........+ +.+..+....+.|++.+...+....+..|..|+
T Consensus 260 ~r~g~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~--- 319 (375)
T TIGR00899 260 KRFGKRRLMLLAALAGVAFYTGLAADN-----------------SLWALLMLQLLNAIFIGILAGIGMLYFQDLMPG--- 319 (375)
T ss_pred HHhcchhHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc---
Confidence 999999988777665555444433332 345555566677777777777777888888774
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHH
Q 010630 437 GQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAI 490 (505)
Q Consensus 437 ~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 490 (505)
++++++|+.+...++|..++|.+.|.+.+..| +...+.+.+++.+++.+...
T Consensus 320 ~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g--~~~~~~~~~~~~~~~~~~~~ 371 (375)
T TIGR00899 320 RAGAATTLYTNTGRVGWIIAGSVGGILAERWS--YHAVYWFAIVMLIVALFCLL 371 (375)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHHHHh
Confidence 45799999999999999999999999999876 66778777777777765543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.7e-30 Score=247.76 Aligned_cols=377 Identities=17% Similarity=0.073 Sum_probs=257.0
Q ss_pred HHHHHHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHHhccccccc
Q 010630 47 WALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGW 126 (505)
Q Consensus 47 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (505)
........|.+.+++|.|..+.+++.++..++..+++++.|+++| |+|||+.++. +.+...++..++.+++++
T Consensus 10 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~g~r~~~~~-~~~~~~~~~~~~~~~~~~-- 82 (399)
T TIGR00893 10 RANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLD----RFGARKTLAV-FIVIWGVFTGLQAFAGAY-- 82 (399)
T ss_pred HHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHH----hcCcceeeHH-HHHHHHHHHHHHHHHcCH--
Confidence 344555667778999999999999999999999999999999999 9999998877 444455555555565555
Q ss_pred ccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhhccccccccccc
Q 010630 127 LLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKIL 206 (505)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l~~~~~~~~~~ 206 (505)
+.+++.+++.|++.+...+...+++.|++|+++|+ +++++.....++|..+++.+++.+....
T Consensus 83 -------------~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~--~~~~~~~~~~~~g~~~~~~~~~~l~~~~-- 145 (399)
T TIGR00893 83 -------------VSLYILRVLLGAAEAPFFPGIILIVASWFPASERA--TAVSIFNSAQGLGGIIGGPLVGWILIHF-- 145 (399)
T ss_pred -------------HHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHH--HHHHHHHHhchHHHHHHHHHHHHHHHhC--
Confidence 78889999999999999999999999999999999 9999999999999999998887632222
Q ss_pred cccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCccc---C---CCCCcchHHHHHHHHHHHH
Q 010630 207 PFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEE---G---HEQSSDVHEAFLWELFGTF 280 (505)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~ 280 (505)
+|++.|.+.+++..+..++..+..||+++++....++++++ . +.+.+++++...++.++.+
T Consensus 146 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (399)
T TIGR00893 146 -------------SWQWAFIIEGVLGIIWGVLWLKFIPDPPQKAKWLTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELL 212 (399)
T ss_pred -------------CchHHHHHHHHHHHHHHHHhhheecCCCCccccCCHHHHhhcchhhccccccccccCCCccchHHHh
Confidence 89999999887777777766666777654322111111000 0 0000011111122345556
Q ss_pred hcccHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010630 281 RYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWG 360 (505)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~~r~g 360 (505)
++ |+++...+..++..........+.+.|+.+. ++.+.. ..........+...++.++.+++.||++
T Consensus 213 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----------~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 279 (399)
T TIGR00893 213 KD--RRVWGLALGQFLVNIGLGFFLTWFPTYLVQE-RGLSIL----------EAGFMASLPGIVGFIGMILGGRLSDLLL 279 (399)
T ss_pred cC--HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-hcccHH----------HhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66 7788777777777777777777788877433 222211 1123333456777889999999999999
Q ss_pred chHHH-HHHHHHHHHH---HHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhccccc
Q 010630 361 AGFIW-GISNILMALC---FLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGL 436 (505)
Q Consensus 361 ~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 436 (505)
||+.. ........++ ........ +.....+.......+.+.+.+ ..+..+++..|..|+ +
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~ 343 (399)
T TIGR00893 280 RRGKSLVFARKTAIIAGLVLSLLMFAT-------------NYVNIPYAALALVALGFFGLG-AGAIGWALISDNAPG--N 343 (399)
T ss_pred hcccchhHHHHHHHHHHHHHHHHHHHh-------------ccchhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcCh--h
Confidence 98621 1111111111 11111110 000022333333333333333 567888999999998 9
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHH
Q 010630 437 GQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAI 490 (505)
Q Consensus 437 ~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 490 (505)
++|+++|+.+....++..++|.+.|.+.|..| .+...+.+.+++.+++.+..+
T Consensus 344 ~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~ 396 (399)
T TIGR00893 344 IAGLTGGLINSLGNLGGIVGPIVIGAIAATTG-SFAGALMVVAALALIGALSYL 396 (399)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHhhhhccCCC-chhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999864 245667777767666665544
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-28 Score=235.95 Aligned_cols=371 Identities=15% Similarity=0.132 Sum_probs=250.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHH
Q 010630 32 KLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISI 111 (505)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~ 111 (505)
.++.+....+..........+.+|.+.+++|.|..+.+++.+...++..+++++.|+++| |+|||+.+.. +....
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~d----r~g~r~~~~~-~~~~~ 78 (382)
T PRK10091 4 VILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSS----RYSLKHILLF-LVALC 78 (382)
T ss_pred hHHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHc----cCccHHHHHH-HHHHH
Confidence 344555555666666667778899999999999999999999999999999999999999 9999988877 55556
Q ss_pred HHHHHHHhcccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHH
Q 010630 112 AVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNI 191 (505)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 191 (505)
.++.++..+++++ +.+++.+++.|++.+...+...+.+.|++|+++|+ ++++.......+|..
T Consensus 79 ~~~~~l~~~~~~~---------------~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~ 141 (382)
T PRK10091 79 VIGNAMFTLSSSY---------------LMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVT--AAVAGMVSGMTVANL 141 (382)
T ss_pred HHHHHHHHHhCcH---------------HHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhh--HHHHHHHHHHHHHHH
Confidence 6666677777665 78888999999998888888888999999998999 899999999999999
Q ss_pred HHhhccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCCCCCcchHHH
Q 010630 192 LGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEA 271 (505)
Q Consensus 192 ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (505)
+++.+++.+.... +||+.|.+.+++..+..+...+..||.+++++. +.++
T Consensus 142 ~g~~l~~~l~~~~---------------gwr~~f~~~~~~~~~~~~~~~~~lp~~~~~~~~---------------~~~~ 191 (382)
T PRK10091 142 LGIPLGTYLSQEF---------------SWRYTFLLIAVFNIAVLASIYFWVPDIRDEAKG---------------GLRE 191 (382)
T ss_pred HhccHHHHHhhhc---------------cHHHHHHHHHHHHHHHHHHHHHhCCCCCccccc---------------CHHH
Confidence 9988877633222 899999998877766666556666764321100 0111
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHH
Q 010630 272 FLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVL 351 (505)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 351 (505)
..+.+++ +..+......++...+......|.++++.+ .++.++. ..........+...++.++
T Consensus 192 ----~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~----------~~~~~~~~~~~~~~ig~~~ 254 (382)
T PRK10091 192 ----QFHFLRS--PAPWLIFAATMFGNAGVFAWFSYIKPYMMF-ISGFSET----------SMTFIMMLVGLGMVLGNLL 254 (382)
T ss_pred ----HHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCHH----------HHHHHHHHHHHHHHHHhHH
Confidence 1234455 455554444444433444444455656532 2222221 1223344467778899999
Q ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchh-HhHhhh
Q 010630 352 MEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPY-ALVSIR 430 (505)
Q Consensus 352 ~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~ 430 (505)
.+++.||+|+|+.+..+..+.+++.+++.... + +.+...+...+.+.+.....+... ....+.
T Consensus 255 ~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~-------------~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 318 (382)
T PRK10091 255 SGRLSGRYSPLRIAAVTDFIIVLALLMLFFFG-------------G---MKTASLIFAFICCAGLFALSAPLQILLLQNA 318 (382)
T ss_pred HheeccccCchhHHHHHHHHHHHHHHHHHHHH-------------h---hHHHHHHHHHHHHHHHHhhhHHHHHHHHHhC
Confidence 99999999999998888877777765554432 1 123333344444454443332222 233333
Q ss_pred hcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHh
Q 010630 431 TESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILA 492 (505)
Q Consensus 431 ~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 492 (505)
.++ +..+... .+....+|+.+||.++|++.|..+ ++...+...+++.+++.......
T Consensus 319 ~~~--~~~~~~~--~~~~~~~g~~~Gp~~~G~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 375 (382)
T PRK10091 319 KGG--ELLGAAG--GQIAFNLGSAIGAYCGGMMLTLGL-AYNYVALPAALLSFAAMSSLLLY 375 (382)
T ss_pred Ccc--hHHHHHH--HHHHHHHHHHHHHHHhHHHHHccc-CcchHHHHHHHHHHHHHHHHHHH
Confidence 333 5555543 467788999999999999999753 36666766655555544333333
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-28 Score=244.78 Aligned_cols=371 Identities=14% Similarity=0.114 Sum_probs=260.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHH
Q 010630 30 LRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAI 109 (505)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~ 109 (505)
.+..+.+....+...+......+.+|.+.+++|.++.+.+++.+.+.++..++.++.|+++| |+|||+.++.. ..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~g~r~~~~~~-~~ 83 (471)
T PRK10504 9 RWQLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLAD----RVGVRNIFFTA-IV 83 (471)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhchHHHHHHH-HH
Confidence 44556666666666667777788899999999999999999999999999999999999999 99999988764 44
Q ss_pred HHHHHHHHHhcccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHH
Q 010630 110 SIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVG 189 (505)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 189 (505)
...++.+.+.++++. +.+++.+++.|++.+...+...+++.|.+|+++|+ ++.++.....++|
T Consensus 84 ~~~~~~~~~~~~~~~---------------~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g 146 (471)
T PRK10504 84 LFTLGSLFCALSGTL---------------NELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYM--AAMTFVTLPGQVG 146 (471)
T ss_pred HHHHHHHHHHHhCCH---------------HHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHH--HHHHHHHHHHHHH
Confidence 455555555555554 67778899999999999899999999999999999 8999999999999
Q ss_pred HHHHhhccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCc-----------
Q 010630 190 NILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFS----------- 258 (505)
Q Consensus 190 ~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~----------- 258 (505)
..+|+.+++.+.... +||+.|.+......+..+......|+.+....+. +...
T Consensus 147 ~~~g~~~~g~l~~~~---------------gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~r~-~~~~~~~~~~~~~~~ 210 (471)
T PRK10504 147 PLLGPALGGLLVEYA---------------SWHWIFLINIPVGIIGAIATLMLMPNYTMQTRRF-DLSGFLLLAVGMATL 210 (471)
T ss_pred HHhhhHHHHHHHhhc---------------cHHHHHHHHHHHHHHHHHHHHHhCCCccccCCCC-ChHHHHHHHHHHHHH
Confidence 999999988743322 8999999988776666666655555543221111 0000
Q ss_pred ---ccCCCCCc-c-----------------------hHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhHhHHhhhHHH
Q 010630 259 ---EEGHEQSS-D-----------------------VHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDW 311 (505)
Q Consensus 259 ---~~~~~~~~-~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (505)
.++.+... . +.++...+ .+.+|| |+++..+...++.+.+......+.+.|
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~ 287 (471)
T PRK10504 211 TLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHARNNNRALFS-LKLFRT--RTFSLGLAGSFAGRIGSGMLPFMTPVF 287 (471)
T ss_pred HHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCccC-HHHhcc--cchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000000 0 00000001 134555 777777776776666655544455555
Q ss_pred HHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 010630 312 MGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDY 391 (505)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (505)
+. +.++.++. ...+......+...++.++.+++.||+|+|+.+..+..+.++...++.+..
T Consensus 288 ~~-~~~g~~~~----------~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~-------- 348 (471)
T PRK10504 288 LQ-IGLGFSPF----------HAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVA-------- 348 (471)
T ss_pred HH-HHcCCCHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhcc--------
Confidence 53 33332211 112333345555666778899999999999999888887777666555431
Q ss_pred cCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhc
Q 010630 392 RGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFG 468 (505)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g 468 (505)
...+.+.......+.|++.+...+....+..+..|+ +.+|.++|+.++...+|..+|+.+.|.+.+..|
T Consensus 349 ------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g 417 (471)
T PRK10504 349 ------LLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPD--NLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFG 417 (471)
T ss_pred ------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH--HhccchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 111233334455666777777777778888899998 999999999999999999999999999998875
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.1e-29 Score=238.92 Aligned_cols=358 Identities=17% Similarity=0.108 Sum_probs=253.0
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHH
Q 010630 39 VAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLI 118 (505)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~ 118 (505)
..+...++.......+|.+.++.+.++.+.+++.++..++..+++++.|+++| |+||||.++....+.. ++..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~d----r~g~r~~~~~~~~~~~-~~~~~~ 81 (365)
T TIGR00900 7 AQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALAD----RYDRKKVMIGADLIRA-VLVAVL 81 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHH----hhchhHHHHHHHHHHH-HHHHHH
Confidence 33444566667777888899999999999999999999999999999999999 9999998887544433 333333
Q ss_pred hcccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhhccc
Q 010630 119 GLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGS 198 (505)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l~~ 198 (505)
.+.+.. . ....+.+++.+++.|++.+...+...+++.|++|+++|+ +++++.+....+|.++++.+++
T Consensus 82 ~~~~~~--------~--~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~g~~l~~ 149 (365)
T TIGR00900 82 PFVALL--------G--GLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLT--QANSLSQAVRSLFYIVGPGIGG 149 (365)
T ss_pred HHHHHc--------C--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH--HHHhHHHHHHHHHHHHHHHHHH
Confidence 333310 0 012377788899999999999999999999999999999 9999999999999999999988
Q ss_pred cccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCCCCCcchHHHHHHHHHH
Q 010630 199 FSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFG 278 (505)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (505)
.+.... +|++.|++.++..++..++... .++++++++++ ++ .+ ++..++..+..+.
T Consensus 150 ~l~~~~---------------g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~--~~---~~~~~~~~~~~~~ 205 (365)
T TIGR00900 150 LMYATL---------------GIKWAIWVDAVGFAISALLIVS-VRIPELAASEI---QA--LS---NAVLRDTREGIKF 205 (365)
T ss_pred HHHHHh---------------hHHHHHHHHHHHHHHHHHHHHh-cccccCCCccc---cc--cc---hhHHHHHHhHHHH
Confidence 743222 8999998877655554443332 22211111000 00 00 0111222233344
Q ss_pred HHhcccHHHHHHHHHHHHHHHhhHhHH-hhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010630 279 TFRYFSGTIWIILIVTALTWLGWFPFL-LFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCR 357 (505)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~~ 357 (505)
.+++ |.++......++......... .+.+.+.. +.++.+.. ..........++..++.++.+++.|
T Consensus 206 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~l~~ 272 (365)
T TIGR00900 206 VLKN--PLLRTLLLLALLFNLVFAPAIVALFPYVQS-KYLGRGST----------HYGWVLAAFGLGALLGALLLGLLGR 272 (365)
T ss_pred HHcC--cHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHhCCchH----------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555 677766666655555554444 45555553 32332221 1123333456777888899999999
Q ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhcccccc
Q 010630 358 KWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLG 437 (505)
Q Consensus 358 r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 437 (505)
|++||+.+..+..+.+++.....+.. . +.+...+..++.|++.+...+...+++.|..|+ ++
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~ 334 (365)
T TIGR00900 273 YFKRMALMTGAIFVIGLAILVVGLTP--------------P--NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPA--EL 334 (365)
T ss_pred HhchhHHHHHHHHHHHHHHHHHHhhc--------------h--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH--HH
Confidence 99999988887776666666555542 1 245666777888999988888889999999998 99
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhhHhhhc
Q 010630 438 QGLSLGVLNLAIVIPQIVVSMGSGPWDQLFG 468 (505)
Q Consensus 438 ~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g 468 (505)
+|++.|+.+....++..++|.+.|.+.|..|
T Consensus 335 ~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 335 LGRVFGAQFSLSHAAWPLGLILAGPLADHLG 365 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999998753
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-28 Score=236.11 Aligned_cols=346 Identities=12% Similarity=0.053 Sum_probs=241.7
Q ss_pred HHHHHHHHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHHhccccc
Q 010630 45 FGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADI 124 (505)
Q Consensus 45 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~ 124 (505)
+......+.+|.+.+++|.|+.+.++..+.+.++..+++++.|+++| |+||||.++. +.....++.+....++++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~d----r~g~r~~l~~-~~~~~~~~~~~~~~~~~~ 101 (406)
T PRK15402 27 IANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSD----RIGRRPVMLA-GVAFFILTCLAILLAQSI 101 (406)
T ss_pred hhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCChHHHHH-HHHHHHHHHHHHHHHccH
Confidence 34555666778888999999999999999999999999999999999 9999998777 444455555555555554
Q ss_pred ccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhhccccccccc
Q 010630 125 GWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFK 204 (505)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l~~~~~~~~ 204 (505)
+.+++.+++.|++.+...+...+.+.|.+|+++|. +..++......+|..+++.+++.+....
T Consensus 102 ---------------~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~i~~~l~~~~ 164 (406)
T PRK15402 102 ---------------EQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAI--KITALMANVALLAPLLGPLVGAALIHVL 164 (406)
T ss_pred ---------------HHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 67778899999988888788889999999999988 8888888888888888888876632222
Q ss_pred cccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCCCCCcchHHHHHHHHHHHHhccc
Q 010630 205 ILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFS 284 (505)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (505)
+|++.|++.+++.++..+...+..||++++.+++ .+.++..++..+.+++
T Consensus 165 ---------------~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~-- 214 (406)
T PRK15402 165 ---------------PWRGMFVLFAALAALSFFGLWRAMPETAGRVGEK-------------LSLKELGRDYKLVLKN-- 214 (406)
T ss_pred ---------------CccHHHHHHHHHHHHHHHHHHHhCCCCCcccccc-------------ccHHHHHHHHHHHHcC--
Confidence 8999999888777766665555666654321110 0012233445556666
Q ss_pred HHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Q 010630 285 GTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFI 364 (505)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~~r~g~~~~ 364 (505)
|.++...+...+..........+.+.++.+ .++.++. ..+ .......+...++.++.+++.||+++|+.
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~g~~~~---------~~g-~~~~~~~~~~~~g~~~~g~l~~r~~~~~~ 283 (406)
T PRK15402 215 RRFVAGALALGLVSLPLLAWIALSPVILIS-GEQLSSY---------EYG-LLQVPVFGALIAGNLTLARLTSRRPLRSL 283 (406)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HhCCCHH---------HHH-HHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 677766655555444444444445555532 2222211 111 11222345567788999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhcccccchhHHHHH
Q 010630 365 WGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGV 444 (505)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 444 (505)
+.++.++..++..++...... ...+.+...+..++.|++.+...+........ .++ +++|++.++
T Consensus 284 ~~~~~~~~~~g~~~~~~~~~~------------~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~-~~~--~~~g~~~~~ 348 (406)
T PRK15402 284 IRMGLWPMVAGLLLAALATVI------------SSHAYLWLTAGLSLYAFGIGLANAGLYRLTLF-SSD--VSKGTVSAA 348 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHc------------ccccHHHHHHHHHHHHHHHHHHhhhHHHHHhh-hcc--ccccHHHHH
Confidence 888887777777666554210 01134455666777888887766555454433 344 789999999
Q ss_pred HHHHHHHHHHHHHhhhhhhHhhhc
Q 010630 445 LNLAIVIPQIVVSMGSGPWDQLFG 468 (505)
Q Consensus 445 ~~~~~~~~~~i~~~~~g~l~~~~g 468 (505)
.++...++..+|+.+.+.+.+..+
T Consensus 349 ~~~~~~~~~~~g~~~~~~l~~~~~ 372 (406)
T PRK15402 349 MGMLSMLIFTVGIELSKHAYLGGG 372 (406)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCc
Confidence 999999999999999999988765
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-28 Score=239.93 Aligned_cols=386 Identities=14% Similarity=0.167 Sum_probs=264.3
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHH
Q 010630 27 KVPLRKLLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIV 105 (505)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~ 105 (505)
+.+.++.+.+++..++.++.+.....+++.|. +.+|+++.++|.+..+..+.+++.+|++|+++||+++|+||||++++
T Consensus 2 ~l~~~~~~~yg~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il 81 (473)
T PRK10429 2 SISMTTKLSYGFGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWIL 81 (473)
T ss_pred CCchhHHHhhccchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHh
Confidence 34567788888888888888888888888776 56799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhccc-ccccchhhHhHHHHH
Q 010630 106 CGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTG-KDHRRTRVANAYFSL 184 (505)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~ 184 (505)
.+.+...+++.+++..++. .....++++++...+.+++.+....+..++.+|+.+ +++|. +..++...
T Consensus 82 ~g~i~~~i~~~llf~~p~~---------~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~--~l~~~~~~ 150 (473)
T PRK10429 82 IGTLANSVVLFLLFSAHLF---------EGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKRERE--QLVPYPRF 150 (473)
T ss_pred hhhHHHHHHHHHHHcCCCC---------CccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHH--HHHHHHHH
Confidence 8888777776666554432 112234555666667788899999999999999994 67777 78888777
Q ss_pred HHHHHHHHHhhccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCCCC
Q 010630 185 FMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQ 264 (505)
Q Consensus 185 ~~~~g~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 264 (505)
+.++|..+.+.+...+ +..... .....+|+....+.+++..++.++.++..||++..+..+.+ ++
T Consensus 151 ~~~ig~~~~~~~~~~~-----~~~~g~---~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~-------~~ 215 (473)
T PRK10429 151 FASLAGFVTAGFTLPF-----VNYVGG---GDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVYSSDNQVSA-------EG 215 (473)
T ss_pred HHHHHHHHHHHHHHHH-----HHHhCC---CchhhhHHHHHHHHHHHHHHHHHHHHcCceecCCccccccc-------cc
Confidence 7787766655443210 000000 01112577777777777777666777767776432111100 00
Q ss_pred CcchHHHHHHHH-HHHHhcccHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHH
Q 010630 265 SSDVHEAFLWEL-FGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSV 343 (505)
Q Consensus 265 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (505)
++...++. +..++| |+++.++...++.+........+.+.|. ++..+ +. ...........+
T Consensus 216 ----~~~~~~~~~~~~~~n--~~~~~ll~~~~~~~~~~~~~~~~~~y~~-~y~~~-~~----------~~~~~~~~~~~i 277 (473)
T PRK10429 216 ----SHLTLKDIVALIYKN--DQLSCLLGMALAYNIASNIINGFAIYYF-TYVIG-DA----------DLFPYYLSYAGA 277 (473)
T ss_pred ----cCCCHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHhhheeeEE-EEECC-CH----------HHHHHHHHHHHH
Confidence 01112333 334466 8888877777777665555444444332 11111 10 011122233456
Q ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhch
Q 010630 344 VLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVP 423 (505)
Q Consensus 344 ~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 423 (505)
..+++.++.+++.||+|+|+.+.++..+..++.+.+...... + ..+.+..++...+.|++.+......
T Consensus 278 ~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~-----------~-~~~~~~~~i~~~l~g~~~~~~~~~~ 345 (473)
T PRK10429 278 ANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLA-----------A-PHNALLIVIAGILLNIGTALFWVLQ 345 (473)
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhcc-----------C-chhHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888999999999999999988877666555544332100 1 1134555666677888888888889
Q ss_pred hHhHhhhhccc-----ccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhc
Q 010630 424 YALVSIRTESL-----GLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFG 468 (505)
Q Consensus 424 ~~~~~~~~~~~-----~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g 468 (505)
+++++|..+.+ +|..|..+|..++...+++.+++.+.|++.+..|
T Consensus 346 ~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~G 395 (473)
T PRK10429 346 VIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIG 395 (473)
T ss_pred HHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999997742 4667889999999999999999999999998775
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-28 Score=237.57 Aligned_cols=372 Identities=10% Similarity=0.085 Sum_probs=256.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHH-HHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHH
Q 010630 33 LLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISI 111 (505)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~ 111 (505)
.+.+....+....+++...++++.++ +++|.|..++|++.++..+...+.+++.|+++| |+|||+.++. +.+..
T Consensus 9 ~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~D----r~g~k~~~~~-~~~~~ 83 (395)
T PRK10054 9 TSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILAD----KFDKKRYMLL-AITAF 83 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh----hcCcchhHHH-HHHHH
Confidence 44444555666678888888888887 679999999999999999999999999999999 9999988776 44445
Q ss_pred HHHHHHHhcccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHH
Q 010630 112 AVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNI 191 (505)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 191 (505)
.++.+.+.+.+++ +.+++.+.+.+.+.+...+...++..|..|+++|+ +++++.....++|..
T Consensus 84 ~~~~~~~~~~~~~---------------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~~~~~lg~~ 146 (395)
T PRK10054 84 ASGFIAIPLVNNV---------------TLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKT--KIFSLNYTMLNIGWT 146 (395)
T ss_pred HHHHHHHHHHhHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHH--HHHHHHHHHHHHHHH
Confidence 5555556565554 55566676777776777777899999999999999 999999999999999
Q ss_pred HHhhccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCCCCCcchHHH
Q 010630 192 LGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEA 271 (505)
Q Consensus 192 ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (505)
+++.+++++.. .+|+..|.+.+++.++..++..+.+||++++++++ + + +
T Consensus 147 igp~l~~~l~~----------------~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~-------~-------~-~ 195 (395)
T PRK10054 147 VGPPLGTLLVM----------------QSINLPFWLAAICSAFPLVFIQIWVQRSEKAIATE-------T-------G-S 195 (395)
T ss_pred HHHHHHHHHHH----------------hccCcHHHHHHHHHHHHHHHHHHHHhccccccccc-------h-------h-h
Confidence 99999887321 17889999888776666555555555543221100 0 0 0
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHH
Q 010630 272 FLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVL 351 (505)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 351 (505)
..+..+.+|+ |+++......++.......+..+.+.|+.. ..+. +.+............+......+.
T Consensus 196 -~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~--------~~~~~~~g~~~~~~~~~~~~~~~~ 263 (395)
T PRK10054 196 -VWSPSVLLQD--KALLWFTCSGFLASFVSGAFASCISQYVMV-VADS--------DFAEKVVAVVLPVNAAMVVSLQYS 263 (395)
T ss_pred -hhhhhhhccC--ceehHHHHHHHHHHHHHHHhhhhHHHHHHH-hccc--------chHHHHHHHHHHhhhhheeeehhH
Confidence 0122344555 677766666666555544444445555421 1110 001111112222334444455678
Q ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhh
Q 010630 352 MEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRT 431 (505)
Q Consensus 352 ~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 431 (505)
.+++.||.++|+.+..+..+.+++...+.... + +.+...+...+.+++.+...+..++.+.+..
T Consensus 264 ~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--------------~--~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~ 327 (395)
T PRK10054 264 VGRRLNAANIRPLMTAGTLCFVIGLVGFIFSG--------------N--SLLLWGMSAAVFTVGEIIYAPGEYMLIDHIA 327 (395)
T ss_pred HHHHHccCCchhHHHHHHHHHHHHHHHHHHcc--------------h--HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhC
Confidence 89999999999988888877777766554431 0 3445556677888888777777788899999
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHH
Q 010630 432 ESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAI 490 (505)
Q Consensus 432 ~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 490 (505)
|+ +.+|++++..+ ...+|..+||.++|.+.|+.| +...|++.+.+..++.++.+
T Consensus 328 p~--~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g--~~~~~~~~~~~~~~~~~~~~ 381 (395)
T PRK10054 328 PP--GMKASYFSAQS-LGWLGAAINPLVSGVILTTLP--PWSLFVILALAIVAAWLLML 381 (395)
T ss_pred Cc--ccceehHhHHH-HHHHHHHHHHHHHHHHHHHcC--hhhHHHHHHHHHHHHHHHHH
Confidence 98 88899988755 566899999999999999986 55566665555444443333
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-28 Score=235.74 Aligned_cols=372 Identities=12% Similarity=0.036 Sum_probs=251.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHH
Q 010630 33 LLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIA 112 (505)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~ 112 (505)
.+...+..+............+|.+.+++|+|..+.+++.+...++..+++++.|+++| |+|||+.++. +.+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~d----r~g~r~~~~~-~~~~~~ 83 (394)
T PRK03699 9 TWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLME----IIPLKRQLIF-GFALMI 83 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhHHHHHHH-HHHHHH
Confidence 33333344444444555667788899999999999999999999999999999999999 9999988776 445555
Q ss_pred HHHHHHhcccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHH
Q 010630 113 VAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNIL 192 (505)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~i 192 (505)
++..+..+.+++ +.+++.+++.|++.+...+...+++.|++|+++|+ ++++..+....+|..+
T Consensus 84 i~~~l~~~~~~~---------------~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~--~~~~~~~~~~~~g~~~ 146 (394)
T PRK03699 84 LAVAGLMFSHSL---------------ALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRG--SRLLFTDSFFSMAGMI 146 (394)
T ss_pred HHHHHHHHcchH---------------HHHHHHHHHHHHhhHhhccchhHHhhhhcccchHH--HHHHHHHHHHHHHHHH
Confidence 666666565554 67788899999999988888899999999998999 8888888888888888
Q ss_pred HhhccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCCCCCcchHHHH
Q 010630 193 GYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAF 272 (505)
Q Consensus 193 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (505)
++.+.+.+... ..+||+.|.+.+++.++..++.++ ++.|+.++++ + + ++++ ..
T Consensus 147 ~~~~~~~l~~~--------------~~gw~~~f~~~~~~~~~~~~~~~~--~~~p~~~~~~-~--~-~~~~----~~--- 199 (394)
T PRK03699 147 FPIIAAYLLAR--------------SIEWYWVYACIGLVYVAIFILTLF--SEFPALGKHA-P--K-ADKP----VA--- 199 (394)
T ss_pred HHHHHHHHHhc--------------cccHHHHHHHHHHHHHHHHHHHHh--cCCccccccC-c--c-ccCc----cc---
Confidence 88776552110 028999999887666555444332 2222111111 0 0 0000 00
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHH
Q 010630 273 LWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLM 352 (505)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 352 (505)
++ ..+ +.++...+..++.......+..+.|.|+.+ .++.++.+. ........+...++.++.
T Consensus 200 -~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~-~~g~s~~~~----------~~~~~~~~~~~~ig~~~~ 261 (394)
T PRK03699 200 -KE----KWG--IGVLFLAIAALLYILAQLTFISWVPEYAQK-KFGMSLEDA----------GNLVSNFWMAYMVGMWIF 261 (394)
T ss_pred -cc----cCC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCChHHh----------hHHHHHHHHHHHHHHHHH
Confidence 00 011 455555555555555556667788888854 334333221 122333456678899999
Q ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhc
Q 010630 353 EKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTE 432 (505)
Q Consensus 353 g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 432 (505)
+++.||+++|+.+.....+..+...++... + +.+...+...+.|++.+..++...+...+..|
T Consensus 262 g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~--------------~---~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~ 324 (394)
T PRK03699 262 SFIVRFFDLQRILTVLAGLALVLMYLFVNT--------------D---DPSHLLYAILGLGFFSSAIYTTIITLGSQQTK 324 (394)
T ss_pred HHHHHHhchhhHHHHHHHHHHHHHHHHHHc--------------C---CchHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 999999999998887666655544443332 1 23344455666777777777666667777665
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHhc
Q 010630 433 SLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAI 493 (505)
Q Consensus 433 ~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (505)
+++++..|.......+|..++|.+.|++.|..| ....++..+++.+++.+.+....
T Consensus 325 ---~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~ 380 (394)
T PRK03699 325 ---VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFG--LQAALLTANGLYAVVFVMCILLG 380 (394)
T ss_pred ---CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhC--chhhhhhhHHHHHHHHHHHHHHH
Confidence 345677888888889999999999999999876 56666666666666654444433
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-28 Score=239.10 Aligned_cols=373 Identities=13% Similarity=0.055 Sum_probs=254.4
Q ss_pred HHHHHHHHHHHHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHHh-
Q 010630 41 GGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIG- 119 (505)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~- 119 (505)
+...++.......+|.+.++++.++.+.|++.+...+...+++++.|+++| |+|||+.++... ....++.....
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~d----r~g~~~~l~~~~-~~~~~~~~~~~~ 101 (417)
T PRK10489 27 FISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLAD----RYDRKKLILLAR-GTCGLGFIGLAL 101 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhh----hcCCceEEEehH-HHHHHHHHHHHH
Confidence 344455666677888888999999999999999999999999999999999 999999887633 33333332221
Q ss_pred --c--ccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhh
Q 010630 120 --L--SADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYA 195 (505)
Q Consensus 120 --~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~ 195 (505)
+ .++ ++.+.+.+++.|++.+...++..+++.|++|+++|+ ++.++.....++|..+|+.
T Consensus 102 ~~~~~~~~---------------~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~g~~ 164 (417)
T PRK10489 102 NAFLPEPS---------------LLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLM--QAGAITMLTVRLGSVISPA 164 (417)
T ss_pred HHHcCCCc---------------HHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHH--HHHHHHHHHHhHHHHhHHH
Confidence 1 122 256677888888888888888899999999999999 9999999999999999999
Q ss_pred ccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCCCCCcchHHHHHHH
Q 010630 196 TGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWE 275 (505)
Q Consensus 196 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (505)
+++.+.... +|++.|.+.++..++..+ ..+.+||.+++.+++ + +..++..+.
T Consensus 165 l~g~l~~~~---------------~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~---------~---~~~~~~~~~ 216 (417)
T PRK10489 165 LGGLLIAAG---------------GVAWNYGLAAAGTFITLL-PLLRLPALPPPPQPR---------E---HPLRSLLAG 216 (417)
T ss_pred HHHHHHHHH---------------hhHHHHHHHHHHHHHHHH-HHHhCCCCCCCCccc---------c---cchHHHHHH
Confidence 988733222 788888887765554443 344556543221100 0 011122223
Q ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 010630 276 LFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKL 355 (505)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l 355 (505)
.+..+++ |.++...+..++... ......+.+.|.. +.++.++. ...+......++.+++.++.+++
T Consensus 217 ~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~p~~~~-~~~g~~~~----------~~g~~~~~~~~g~~ig~~~~~~l 282 (417)
T PRK10489 217 FRFLLAS--PVVGGIALLGGLLTM-ASAVRVLYPALAD-EVWQMGAA----------QIGLLYAAVPLGAALGALTSGWL 282 (417)
T ss_pred HHHHHcC--hHHHHHHHHHHHHHH-HHhHHHhhHHHHH-hccCCChh----------HhHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444 555544443333222 2344455666663 22332221 11233334567778888999999
Q ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhcccc
Q 010630 356 CRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLG 435 (505)
Q Consensus 356 ~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 435 (505)
.||.++++.+..+..+.+++++++.... +.+...+...+.|++.+...+...+++.+..|+
T Consensus 283 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~-- 343 (417)
T PRK10489 283 AHSARPGLLMLLSTLGSFLAVGLFGLMP-----------------MWILAVLCLALFGYLSAISSLLQYTLLQTQTPD-- 343 (417)
T ss_pred hhccCcchHHHHHHHHHHHHHHHHHccc-----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH--
Confidence 9997777777777777766665554431 345556667777887777777777889999998
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHhccCCCC
Q 010630 436 LGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPRSSA 498 (505)
Q Consensus 436 ~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (505)
+.+|+++|+++....+|+.+||.+.|.+.+..| ....+...+.+.++..++.....++.++
T Consensus 344 ~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (417)
T PRK10489 344 EMLGRINGLWTAQNVTGDAIGAALLGGLGAMMT--PVASASASGFGLLIIGVLLLLVLGELRR 404 (417)
T ss_pred HHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhc--hhhHHHHHHHHHHHHHHHHHHhcccccc
Confidence 899999999999999999999999999999876 5566666665555555555555555443
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.8e-29 Score=243.17 Aligned_cols=371 Identities=23% Similarity=0.300 Sum_probs=278.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhH-HHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHH
Q 010630 37 ASVAGGIQFGWALQLSLLTPY-VQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAV 115 (505)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~ 115 (505)
+...++.++.+.....++++| .+.+|+++..+|++..+..+.+++.+|+.|.++||+++|+||||++++.+.+...+++
T Consensus 7 ~~g~~~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~ 86 (428)
T PF13347_consen 7 GIGDLGYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSF 86 (428)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHH
Confidence 334455666666665565555 5778999999999999999999999999999999999999999999998988888888
Q ss_pred HHHhcc-cccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccc-cccchhhHhHHHHHHHHHHHHHH
Q 010630 116 LLIGLS-ADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGK-DHRRTRVANAYFSLFMAVGNILG 193 (505)
Q Consensus 116 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~~~g~~ig 193 (505)
.+++.. |.- .+......++.+..++..++.+....+..++.+|+.++ ++|. +..+.......+|..+.
T Consensus 87 ~llf~~~p~~--------~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~--~l~~~~~~~~~~g~~l~ 156 (428)
T PF13347_consen 87 FLLFSPPPAG--------LSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERT--RLSSWRMIFSMIGSLLA 156 (428)
T ss_pred HHhhccccch--------hhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhh--hHHHHHHHHHHHHHHHH
Confidence 888765 311 11122334556667777999999999999999999986 5677 89999888888888766
Q ss_pred hhccccccccccccccccccccccc-cchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCCCCCcchHHHH
Q 010630 194 YATGSFSGWFKILPFTLTSACNVDC-ANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAF 272 (505)
Q Consensus 194 ~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (505)
..+.+.+. ...++... .+|++...+.+++..+..++..+..||++++.+++ +++.+.
T Consensus 157 ~~~~~~l~---------~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~-------------~~~~~~ 214 (428)
T PF13347_consen 157 SFLAPILV---------SWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKERSVEVTEQ-------------EKKISL 214 (428)
T ss_pred HHHhhhhh---------hhhccCccchHHHHHHHHHHHHHHHHhhhhhheeeecccccccc-------------cccccc
Confidence 66554411 11222222 27999999999999999899889899822211111 011222
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHH
Q 010630 273 LWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLM 352 (505)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 352 (505)
.+++++.++| |+++.++...++.+.+......+.+.|. +++.+.+.. .........+..+++.+++
T Consensus 215 ~~~~~~~~~n--r~~~~l~~~~~~~~~~~~~~~~~~~y~~-~~vl~~~~~-----------~~~~~~~~~~~~~v~~~~~ 280 (428)
T PF13347_consen 215 RDSLRSLFRN--RPFRILLLAFFLQWLAFALMNTFLPYYF-TYVLGNEGL-----------ISIFMLIFFVASIVGSPLW 280 (428)
T ss_pred ccchhhhccc--chHHHHHHHHHHHHhhhhhhhhHHHHHH-HHHhcCchh-----------hHHHHHHHHHHHHHHHHHH
Confidence 3345556666 7888888888888777666555554444 444432211 1122334567778888999
Q ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhc
Q 010630 353 EKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTE 432 (505)
Q Consensus 353 g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 432 (505)
++++||+|+|+.+..+..+.+++.+++.+.. +. +.+..++..++.|++.+.....++++++|..+
T Consensus 281 ~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~-------------~~--~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id 345 (428)
T PF13347_consen 281 GRLSKRFGKKKVYIIGLLLAALGFLLLFFLG-------------PG--SPWLVLILFILAGIGYGAFFVIPWAMLADVID 345 (428)
T ss_pred HHHHHHccceeehhhhHHHHHHHHHHHHHHH-------------hh--hHHHHHHHHHHhHhhhcccccccccccccchh
Confidence 9999999999999999999999888877773 11 57888899999999999999999999999988
Q ss_pred cc-----ccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhc
Q 010630 433 SL-----GLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFG 468 (505)
Q Consensus 433 ~~-----~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g 468 (505)
.+ +++.|..+|+.+....+++.+++.+.|.+.+..|
T Consensus 346 ~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~G 386 (428)
T PF13347_consen 346 YDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVG 386 (428)
T ss_pred hHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhC
Confidence 53 3668999999999999999999999999998876
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-28 Score=232.01 Aligned_cols=398 Identities=14% Similarity=0.121 Sum_probs=265.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHHH-HhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHH
Q 010630 31 RKLLKVASVAGGIQFGWALQLSLLTPYVQ-ELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAI 109 (505)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~ 109 (505)
+.++......+.....+....+..+.+.+ ++|+|++|.+++.+++.+.+.+..++.|++.| |+|.|+.+.....+
T Consensus 34 r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~D----r~G~R~v~~~~~ll 109 (462)
T PRK15034 34 RNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVP----IFGGRRWTVFSTAI 109 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCChHHHHHHHHH
Confidence 44443333333333466677777777765 89999999999999999999999999999999 99999888774444
Q ss_pred HHHHHHHHHhcc-cccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHH
Q 010630 110 SIAVAVLLIGLS-ADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAV 188 (505)
Q Consensus 110 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 188 (505)
..+..+...++ ++. ...++.+++.+++.|++ +..+++....+++++|+++|+ +++|+.....++
T Consensus 110 -~~i~~~~~~~a~~~~-----------~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG--~A~Gi~~g~G~~ 174 (462)
T PRK15034 110 -LIIPCVWLGIAVQNP-----------NTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQG--SALGINGGLGNL 174 (462)
T ss_pred -HHHHHHHHHHHHccc-----------CCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhH--HHHHHHHHHHhh
Confidence 45555555443 110 11237888889999997 667888999999999999999 999999777777
Q ss_pred HHHHHhhcccccccccccccccc---ccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCCCCC
Q 010630 189 GNILGYATGSFSGWFKILPFTLT---SACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQS 265 (505)
Q Consensus 189 g~~ig~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 265 (505)
|..+++.+.+.+....++..... ........+|+...++..++.++..++.++..++.+.. +
T Consensus 175 G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~~---~------------ 239 (462)
T PRK15034 175 GVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIASS---R------------ 239 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCcccc---c------------
Confidence 77666655543111000000000 00000112688888888877777777777665553321 0
Q ss_pred cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHH
Q 010630 266 SDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVL 345 (505)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (505)
...++.++.+|+ |..|.+++.+++.+.++..+..++|.|..+ .+. ... ......+..+..
T Consensus 240 -----~~~~~~~~vlk~--~~~Wllslly~~tFG~fvg~s~~lp~~~~~-~~~-----------~~~-~l~~~~l~~l~~ 299 (462)
T PRK15034 240 -----ASIADQLPVLQR--LHLWLLSLLYLATFGSFIGFSAGFAMLAKT-QFP-----------DVN-ILRLAFFGPFIG 299 (462)
T ss_pred -----cCHHHHHHHhCC--CchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HcC-----------hHH-HHHHHHHHHHHH
Confidence 113566778888 888999988888887777777788877643 221 000 011122345667
Q ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCC--ChhHHHHHHHHHHHhhHHHHHhhch
Q 010630 346 GITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPP--NGIVIAALIIFTILGGPLAITYSVP 423 (505)
Q Consensus 346 ~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~ 423 (505)
.+..+++|+++||+|+++++.++.+...++........ |. ..+.+.....+....++.|..+...
T Consensus 300 ~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~l-------------p~~~~~~~~~~~~~~~~l~~~~G~gngsv 366 (462)
T PRK15034 300 AIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTL-------------PGTGSGNFIAFYAVFMGLFLTAGLGSGST 366 (462)
T ss_pred HHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHh-------------ccccccHHHHHHHHHHHHHHHhcccchHH
Confidence 78889999999999999999888876666654433331 21 1133434443333334444444455
Q ss_pred hHhHhhhhcc-------------------cccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHH
Q 010630 424 YALVSIRTES-------------------LGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALA 484 (505)
Q Consensus 424 ~~~~~~~~~~-------------------~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 484 (505)
+.++.+.+|+ .+++.|.+.|+.+....+|+++.|.+.|...+..| .+...|+...+..++
T Consensus 367 fk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g-~~~~~~~~~~~~~~~ 445 (462)
T PRK15034 367 FQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTG-SPVGAMKVFLIFYIV 445 (462)
T ss_pred HHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcC-CcHHHHHHHHHHHHH
Confidence 5666666652 01267899999999999999999999999999886 467778888888888
Q ss_pred HHHHHHHhccCC
Q 010630 485 GGLIAILAIPRS 496 (505)
Q Consensus 485 ~~~~~~~~~~~~ 496 (505)
+.++++....|+
T Consensus 446 ~~~~~w~~y~r~ 457 (462)
T PRK15034 446 CVLLTWLVYGRR 457 (462)
T ss_pred HHHHHHHHhccC
Confidence 877777665443
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-28 Score=234.28 Aligned_cols=369 Identities=11% Similarity=0.112 Sum_probs=249.3
Q ss_pred HHHHHHHHHHHHHHHhhhhHH-HHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHH
Q 010630 38 SVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVL 116 (505)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~ 116 (505)
...+....+.....++++.+. +++|.|..++|++.+...+...+.+++.|+++| |+|||+.++. +.....++.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~d----r~g~k~~l~~-~~~~~~~~~~ 91 (400)
T PRK11646 17 IDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIAD----RFGAKPMIVT-GMLMRAAGFA 91 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHH----HhCchHHHHH-HHHHHHHHHH
Confidence 334445566677778888765 789999999999999999999999999999999 9999988776 5555666666
Q ss_pred HHhcccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhhc
Q 010630 117 LIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYAT 196 (505)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l 196 (505)
.+.+.++. +.+++.+++.|++.+...++..+++.|++|+++|+ +++++.....++|..+|+.+
T Consensus 92 ~~~~~~~~---------------~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~--~a~~~~~~~~~~g~~ig~~l 154 (400)
T PRK11646 92 TMAIAHEP---------------WLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRG--RFFSLLMMQDSAGAVIGALL 154 (400)
T ss_pred HHHHhccH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 66555554 67778888999988888888899999999999999 99999999999999999999
Q ss_pred cccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCCCCCcchHHHHHHHH
Q 010630 197 GSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWEL 276 (505)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (505)
++++. .. +|++.|++.+++.++..++..+..||.+..+ . +++..++.
T Consensus 155 ~g~l~-~~---------------g~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~--~---------------~~~~~~~~ 201 (400)
T PRK11646 155 GSWLL-QY---------------DFRLVCATGAVLFVLAAAFNAWLLPAYKLST--V---------------RTPVREGM 201 (400)
T ss_pred HHHHH-Hh---------------hHHHHHHHHHHHHHHHHHHHHHhCCcccccc--c---------------chhhHHHH
Confidence 88743 22 8999999888776666555555555432110 0 00111233
Q ss_pred HHHHhcccHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 010630 277 FGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLC 356 (505)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~ 356 (505)
.+.+++ |+++......+...........+.|.|+.+ ..+ ++. ..+ .......+.........+++.
T Consensus 202 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~-~~~---------~~g-~l~~~~~~~~~~~~~~~~~~~ 267 (400)
T PRK11646 202 TRVLRD--KRFVTYVLTLTGYYMLAVQVMLMLPIMVND-IAG-SPS---------AVK-WMYAIEACLSLTLLYPIARWS 267 (400)
T ss_pred HHHHcC--chHHHHHHHHHHHHHHHHHHHHhhhhhHHh-hcC-Cch---------HHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 445555 555554443333322222233455666532 221 111 111 112223333333343445555
Q ss_pred -HHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhcccc
Q 010630 357 -RKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLG 435 (505)
Q Consensus 357 -~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 435 (505)
||++.++.+..+..+.+++..++...+ +.+...+...+.+++.+...+...+++.+..|+
T Consensus 268 ~~r~~~~~~~~~~~~~~~~~~~~l~~~~-----------------~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~-- 328 (400)
T PRK11646 268 EKRFRLEHRLMAGLLIMSLSMFPIGMVS-----------------NLQQLFTLICLFYIGSIIAEPARETLSASLADA-- 328 (400)
T ss_pred HHhcchhHHHHHHHHHHHHHHHHHHHhh-----------------hHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCc--
Confidence 456666666677767766666555442 234444555667777777777888999999998
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcC--CCchHHHHHHHHHHHHHHHHHHhcc
Q 010630 436 LGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGG--GNSPAFAVGGISALAGGLIAILAIP 494 (505)
Q Consensus 436 ~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (505)
+++|+++|+.+....+|+.+||.++|++.|..++ .....+...+++.+++.+......+
T Consensus 329 ~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (400)
T PRK11646 329 RARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLLALYWQFS 389 (400)
T ss_pred ccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999998642 1244555556666666544443333
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-28 Score=237.82 Aligned_cols=375 Identities=12% Similarity=0.070 Sum_probs=243.7
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHH
Q 010630 29 PLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGA 108 (505)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~ 108 (505)
.++......+..+...+.........|.+.+++|.|..+.+++.++..++..+++++.|+++| |+|||++++.. .
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~D----r~g~r~~~~~~-~ 84 (405)
T TIGR00891 10 QWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGD----RYGRRLPMVTS-I 84 (405)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHH----HhccHHHHHHH-H
Confidence 344444555566666677777788888888999999999999999999999999999999999 99999988874 4
Q ss_pred HHHHHHHHHHhcccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHH
Q 010630 109 ISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAV 188 (505)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 188 (505)
+...++.++..+.+++ +.+++.+++.|++.+..++...+++.|++|+++|+ +++++......+
T Consensus 85 ~~~~~~~~~~~~~~~~---------------~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~ 147 (405)
T TIGR00891 85 VLFSAGTLACGFAPGY---------------ITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRN--KASGLLISGYAV 147 (405)
T ss_pred HHHHHHHHHHHHhccH---------------HHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhh--HHHHHHHHHHHH
Confidence 4455555555565555 77788899999999999999999999999999999 999999999999
Q ss_pred HHHHHhhccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCC----CC
Q 010630 189 GNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGH----EQ 264 (505)
Q Consensus 189 g~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~----~~ 264 (505)
|..+++.+++.+.... +.+||+.|.+.++..++ .++.....||+++.+++++++++.++. .+
T Consensus 148 g~~~~~~l~~~l~~~~-------------~~~w~~~f~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (405)
T TIGR00891 148 GAVVAAQVYSLVVPVW-------------GDGWRALFFISILPIIF-ALWLRKNIPEAEDWKEKHAGKALVRTMVDILYG 213 (405)
T ss_pred HHHHHHHHHHHHHHhc-------------CccHHHHHHHHHHHHHH-HHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhc
Confidence 9999998876632111 12599999876544433 344445567654322111111000000 00
Q ss_pred CcchHHHHHHHHHHHHhcccHH----HHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHH
Q 010630 265 SSDVHEAFLWELFGTFRYFSGT----IWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLML 340 (505)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (505)
.++..+...++.....++..+. +..+.....+..........+.+.|+.++ ++.+.. ........
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~----------~~~~~~~~ 282 (405)
T TIGR00891 214 GEHRIANIVMTLAAAMVQSAGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKAD-LGLSPH----------TVANIVVF 282 (405)
T ss_pred cchhhhhhhhhhhHHhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH-hCCCHH----------HHHHHHHH
Confidence 0000011111111111111011 22222222222222333444566666432 221111 11222334
Q ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHh
Q 010630 341 NSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITY 420 (505)
Q Consensus 341 ~~~~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 420 (505)
..++..++.++.+++.||+|||+.+..+..+..+........ .. +.+...+...+.++..+...
T Consensus 283 ~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~--------------~~--~~~~~~~~~~~~~~~~~~~~ 346 (405)
T TIGR00891 283 SNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAI--------------GA--NVAVLGLGLFFQQMLVQGIW 346 (405)
T ss_pred HHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHh--------------CC--chHHHHHHHHHHHHHHccch
Confidence 567788899999999999999998887766543322222111 11 23333444345555555555
Q ss_pred hchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhc
Q 010630 421 SVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFG 468 (505)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g 468 (505)
+...++++|..|+ +++|+++|+.+....++..++|.+.|.+.|..|
T Consensus 347 ~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g 392 (405)
T TIGR00891 347 GILPKHLGEYFPT--DQRAAGLGFTYQLGNLGGALAPIIGALLAQRLD 392 (405)
T ss_pred hhHHHHHhhhCCc--chhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6667888999998 999999999999999999999999999999976
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-27 Score=230.87 Aligned_cols=355 Identities=15% Similarity=0.128 Sum_probs=249.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHH
Q 010630 31 RKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAIS 110 (505)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~ 110 (505)
+..+......+...++.....+.+|.+.+++|.|+.+.+++.++..++..+++++.|+++| |+|||+.++. +...
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d----~~g~r~~~~~-~~~~ 79 (385)
T TIGR00710 5 AFALLLGCLSILGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSD----RYGRRPVLLL-GLFI 79 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHH----hcCChHHHHH-HHHH
Confidence 3344444444444556667777888888999999999999999999999999999999999 9999988877 4455
Q ss_pred HHHHHHHHhcccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHH
Q 010630 111 IAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGN 190 (505)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~ 190 (505)
..++.+...+.++. +.+++.+++.|++.+...+...+++.|++|+++|+ +++++.+....+|.
T Consensus 80 ~~~~~~~~~~~~~~---------------~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~ 142 (385)
T TIGR00710 80 FALSSLGLALSNNI---------------ETLLVLRFVQAFGASAGSVISQALVRDIYPGEELS--RIYSILMPVLALAP 142 (385)
T ss_pred HHHHHHHHHHHccH---------------HHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHH--HHHHHHHHHHHHHH
Confidence 55566666555554 67788899999999999999999999999999999 99999999999999
Q ss_pred HHHhhccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCCCCCcchHH
Q 010630 191 ILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHE 270 (505)
Q Consensus 191 ~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (505)
.+++.+++.+.... +|++.|++.+++..+..++.++..||++++++++ +.+
T Consensus 143 ~~g~~~~~~l~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~ 193 (385)
T TIGR00710 143 AVAPLLGGYILVWL---------------SWHAIFAFLSLAGILLSALIFFILPETLPYEARI--------------QIS 193 (385)
T ss_pred HHHHHHHHHHHHHc---------------CHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccC--------------CHH
Confidence 99999887633222 8999999888777777666666666654322110 112
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHH
Q 010630 271 AFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSV 350 (505)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 350 (505)
+..++.++.+++ |+++...+...+..........+.+.++.+ .++.++. ..........+...++.+
T Consensus 194 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~----------~~g~~~~~~~~~~~~~~~ 260 (385)
T TIGR00710 194 TYFETFLLLLKS--KMFWGYALIYGASFGGFFAFFSGAPFVYID-IMGVSPS----------VFGLLFALNIIAMIFGGF 260 (385)
T ss_pred HHHHHHHHHHcC--chhHHHHHHHHHHHHHHHHHHHcChHHHHH-HcCCCHH----------HHHHHHHHHHHHHHHHHH
Confidence 223445556666 667766655555555555555566666532 2332211 112223345677788899
Q ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhh
Q 010630 351 LMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIR 430 (505)
Q Consensus 351 ~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 430 (505)
+.+++.||+++|+.+..+..+..++..++..... +.............+.|++.+...+.......|.
T Consensus 261 ~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 328 (385)
T TIGR00710 261 LNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAI------------LGLGSWAMIIGPMMFVGIGNSMISSIAMAYALED 328 (385)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH------------hccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999988877777666665544321 0001234445556677888888777777777776
Q ss_pred hcccccchhHHHHHHHHHHHHHHHHHHhhhhhhH
Q 010630 431 TESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWD 464 (505)
Q Consensus 431 ~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~ 464 (505)
.| +++|++.++.+.....++.+.+.+.+.+.
T Consensus 329 ~~---~~~g~~~~~~~~~~~~~g~i~~~~~~~~~ 359 (385)
T TIGR00710 329 FP---HVAGTASALFGTLRLVLGAIVGYLVSLIH 359 (385)
T ss_pred Cc---ccchHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 65 56899999988887765555555555443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-28 Score=242.73 Aligned_cols=369 Identities=13% Similarity=0.041 Sum_probs=266.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHH
Q 010630 32 KLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISI 111 (505)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~ 111 (505)
.+..++...+...+........+|.+.+++|.+..+.+++.+.+.++..+..++.|+++| |+|||+.++. +....
T Consensus 7 ~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D----~~Grk~~l~~-~~~~~ 81 (495)
T PRK14995 7 TLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGD----RIGFKRLLML-GGTLF 81 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHH----HhccHHHHHH-HHHHH
Confidence 344455566666667777788899999999999999999999999999999999999999 9999998877 55556
Q ss_pred HHHHHHHhcccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcc-cccccchhhHhHHHHHHHHHHH
Q 010630 112 AVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLT-GKDHRRTRVANAYFSLFMAVGN 190 (505)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~~~g~ 190 (505)
.++.+.+.++++. +.++++|.++|++.+...+...+.+.+.+ |+++|+ +++++.....++|.
T Consensus 82 ~~~~~~~~~a~~~---------------~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~--~~~g~~~~~~~~g~ 144 (495)
T PRK14995 82 GLASLAAAFSPTA---------------SWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRN--MALGVWAAVGSGGA 144 (495)
T ss_pred HHHHHHHHHcCCH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH--HHHHHHHHHHHHHH
Confidence 6666677777766 78889999999999988887777776765 678899 99999999999999
Q ss_pred HHHhhccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcc-----------
Q 010630 191 ILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSE----------- 259 (505)
Q Consensus 191 ~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~----------- 259 (505)
.+||.+++++.... +||+.|++...+.++..++..+.+||+++++.++.+....
T Consensus 145 ~~gp~lgg~l~~~~---------------gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~ 209 (495)
T PRK14995 145 AFGPLVGGILLEHF---------------YWGSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLV 209 (495)
T ss_pred HHHHHHHHHhhccC---------------ChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHH
Confidence 99999998854433 8999999988777777777777777765332211110000
Q ss_pred ---cCCCCCcchHHH---------------HHHHH--------HHHHhcccHHHHHHHHHHHHHHHhhHhHHhhhHHHHH
Q 010630 260 ---EGHEQSSDVHEA---------------FLWEL--------FGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMG 313 (505)
Q Consensus 260 ---~~~~~~~~~~~~---------------~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (505)
++.......... ..++. .+.+|+ |.++...+..++..........+.+.|++
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~e~~~~~p~~~~~lf~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~lq 287 (495)
T PRK14995 210 YSAKTALKGFLSLWVTSLTLLTGALLLGLFIRTQLAASRPMIDMRLFTH--RIILSGVVMAMTAMITLVGFELLMAQELQ 287 (495)
T ss_pred HHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCHHHhCC--cccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000000000 00011 234454 56666556666666666666667777773
Q ss_pred HHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccC
Q 010630 314 REIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRG 393 (505)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (505)
..++.++.+ ....+....+...++.++.|++.||+|+|+.+..+.++.+++..++....
T Consensus 288 -~v~g~s~~~----------ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~---------- 346 (495)
T PRK14995 288 -FVHGLSPLE----------AGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTD---------- 346 (495)
T ss_pred -HHcCCCHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhc----------
Confidence 333333221 22334446777888899999999999999988888877777766655432
Q ss_pred CCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhh
Q 010630 394 HDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQL 466 (505)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~ 466 (505)
... +.+......++.|++.+...+.....+.+..|+ +++|.+.++.++...+|+.+|+.+.|.+.+.
T Consensus 347 ---~~~-~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~~ 413 (495)
T PRK14995 347 ---FST-QQWQAWGLMALLGFSAASALLASTSAIMAAAPP--EKAAAAGAIETMAYELGAGLGIAIFGLLLSR 413 (495)
T ss_pred ---CCC-chHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCH--HhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 234455677788999998887788888888898 9999999999999999999999999998753
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-27 Score=230.79 Aligned_cols=378 Identities=14% Similarity=0.091 Sum_probs=245.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHH
Q 010630 35 KVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVA 114 (505)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~ 114 (505)
......+....+......+++++.+++|.++.+.+++.+.+.++..+++++.|+++| |+||||.++....+. .++
T Consensus 17 ~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d----r~g~k~~l~~~~~~~-~~~ 91 (402)
T TIGR00897 17 WGYIGVVVFMTGDGLEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAE----IIGPLKTMMIGLLLW-CVG 91 (402)
T ss_pred HHHHHHHHHHHhhhhHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHH----HcCcHHHHHHHHHHH-HHH
Confidence 333444455556566677888899999999999999999999999999999999999 999999887744443 333
Q ss_pred HHHH---hcc-cccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHH
Q 010630 115 VLLI---GLS-ADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGN 190 (505)
Q Consensus 115 ~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~ 190 (505)
.+.+ ... ++ .+.+++.+.+.|++.+...+...+.+.|.+|+++|+ +++|+.....++|.
T Consensus 92 ~~~~~~~~~~~~~---------------~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g--~~~g~~~~~~~~g~ 154 (402)
T TIGR00897 92 HAAFIVFGLGHAN---------------YPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLS--SAVGWFWAVYSIGI 154 (402)
T ss_pred HHHHHHHhccCcc---------------HHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHH--HHHHHHHHHHHHHH
Confidence 3322 111 22 256667888889888877777788899999999999 99999999999996
Q ss_pred -HHHhhccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCCCCCcchH
Q 010630 191 -ILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVH 269 (505)
Q Consensus 191 -~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 269 (505)
.+++.+++++.... +|+..++.......+..++..+..+|++++++++ + ++ +.
T Consensus 155 ~~~g~~~~~~l~~~~---------------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~----~~---~~ 208 (402)
T TIGR00897 155 GVFGSYYSSYAIPAF---------------GEMNTLWSALAFVLTGGVIALFSNKDIFTPQHMQ----T----RE---KF 208 (402)
T ss_pred HHHHHHHHHhccccc---------------chHHHHHHHHHHHHHHHHHHHhccCCCCCccccc----C----Cc---ch
Confidence 57887776532211 4443333333222233333444445432211110 0 00 01
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHH
Q 010630 270 EAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITS 349 (505)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 349 (505)
++..++....+++ |.++...+..++..........+.|.|+. + ++.+... .........+...++.
T Consensus 209 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~-~g~s~~~----------~~~~~~~~~~~~~ig~ 274 (402)
T TIGR00897 209 SELGKAATILFTN--PNVLLGGMVRIINTIGLFGFAVFLPMFVA-E-LGFSTSE----------WLQIWGTFFFTNIVFN 274 (402)
T ss_pred hhHHHHHHHHHcC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-cCCChhH----------HHHHHHHHHHHHHHHH
Confidence 1112233445566 77777776666666666677778887773 2 3332221 1122233567788999
Q ss_pred HHHHHHHHHhcchHHHH-HHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHh
Q 010630 350 VLMEKLCRKWGAGFIWG-ISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVS 428 (505)
Q Consensus 350 ~~~g~l~~r~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 428 (505)
++.|+++||++||+... .+.+..+++...+..... ....+.+..++...+.|++.+...+ ......
T Consensus 275 ~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~------------~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~ 341 (402)
T TIGR00897 275 VIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQ------------HFGHSFAVALIIAIALGIFLAGYVP-LAAVFP 341 (402)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHH------------ccCCcHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 99999999999888764 233333333333222210 0001344455666677777666544 334555
Q ss_pred hhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHh
Q 010630 429 IRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILA 492 (505)
Q Consensus 429 ~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 492 (505)
+. ++ +++|+++|+.+....+++.++|.+.|.+.|..| ....+++.+++.+++.++..+.
T Consensus 342 ~~-~~--~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g--~~~~~~~~a~~~~i~~~~~~~~ 400 (402)
T TIGR00897 342 TL-AP--KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFG--AIGVVWIFAALYVVSAFLTAFI 400 (402)
T ss_pred hh-Cc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--hHHHHHHHHHHHHHHHHHHHHh
Confidence 54 44 679999999999999999999999999999876 6667777777777777666554
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-27 Score=238.10 Aligned_cols=405 Identities=9% Similarity=0.027 Sum_probs=238.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHhCCCchh----HHH--HHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHH
Q 010630 37 ASVAGGIQFGWALQLSLLTPYVQELGIPHAW----ASI--IWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAIS 110 (505)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~----~g~--~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~ 110 (505)
.+..+...+.+.......|.+.++++.+... .+. ..++..++..+++++.|+++| |+|||+.++. +.++
T Consensus 22 ~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~D----r~Grr~~l~~-~~~l 96 (490)
T PRK10642 22 SLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGD----KYGRQKILAI-TIVI 96 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcccHHHHHH-HHHH
Confidence 3444444455555555666666777533321 222 246777889999999999999 9999998887 5556
Q ss_pred HHHHHHHHhcccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHH
Q 010630 111 IAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGN 190 (505)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~ 190 (505)
..++.+++++++++... .......+++.|+++|++.+..++...++++|++|+++|+ +..++...+..+|.
T Consensus 97 ~~i~~~~~a~~~~~~~~-------g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg--~~~~~~~~~~~~G~ 167 (490)
T PRK10642 97 MSISTFCIGLIPSYATI-------GIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRG--FMGSWLDFGSIAGF 167 (490)
T ss_pred HHHHHHHHHhcccHHHH-------HHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCc--HHHHHHHHHHHHHH
Confidence 66777777787775100 0011124788999999999999999999999999999999 99999888888888
Q ss_pred HHHhhccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCCCCCcchHH
Q 010630 191 ILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHE 270 (505)
Q Consensus 191 ~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (505)
.+|+.+..++.. .+.... ....+||+.|++.+++.++ .++....+||+|+.....++.++.++ +...++++
T Consensus 168 ~lg~~~~~~~~~-----~~~~~~--~~~~gWR~~f~i~~~~~l~-~~~~~~~~~esp~~~~~~~~~~~~~~-~~~~~~~~ 238 (490)
T PRK10642 168 VLGAGVVVLIST-----IVGEAN--FLDWGWRIPFFIALPLGII-GLYLRHALEETPAFQQHVDKLEQGDR-EGLQDGPK 238 (490)
T ss_pred HHHHHHHHHHHH-----hcCHHH--hcCccHHHHHHHHHHHHHH-HHHHHHcCCCChhHHHHHHhhhhhcc-cccccccc
Confidence 887765433110 000000 0013899999997754443 44445567887653211110000000 00000011
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHH
Q 010630 271 AFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSV 350 (505)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 350 (505)
...+++ +++.++.+.......++....++....|.+.|+.+. ++.+. ..+........+...++.+
T Consensus 239 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-~g~s~----------~~~~~~~~~~~~~~~~~~~ 304 (490)
T PRK10642 239 VSFKEI---ATKHWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHN-LHYSE----------DHGVLIIIAIMIGMLFVQP 304 (490)
T ss_pred CCHHHH---HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCH----------HHHHHHHHHHHHHHHHHHH
Confidence 112222 222112222222223333445556666788877432 22211 1112223334566778888
Q ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHH-HHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhh
Q 010630 351 LMEKLCRKWGAGFIWGISNILMALCFLA-MLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSI 429 (505)
Q Consensus 351 ~~g~l~~r~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 429 (505)
+.|+++||+|||+.+..+.++..+.... +.... .. +....++..++.+++.+........+..+
T Consensus 305 ~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~-------------~~--~~~~~~~~~~~~g~~~~~~~g~~~~~~~~ 369 (490)
T PRK10642 305 VMGLLSDRFGRRPFVILGSVALFVLAIPAFILIN-------------SN--VIGLIFAGLLMLAVILNCFTGVMASTLPA 369 (490)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHh-------------CC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999887776544332222 22221 11 23334444555566555555556677888
Q ss_pred hhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHhccCCC
Q 010630 430 RTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPRSS 497 (505)
Q Consensus 430 ~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (505)
.+|+ +.||+..|+.+....+++.++|.+.|++.+..++ ....+.+..+..+++.+..+ +.||++
T Consensus 370 ~~p~--~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~-~~~~~~~~~~~~~i~~~~~~-~~pes~ 433 (490)
T PRK10642 370 MFPT--HIRYSALAAAFNISVLVAGLTPTLAAWLVESTQN-LMMPAYYLMVVAVIGLITGV-TMKETA 433 (490)
T ss_pred HCCC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-chHHHHHHHHHHHHHHHHHH-Hhcccc
Confidence 9999 9999999975555666778999999999887642 23333334444455544443 345543
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-28 Score=238.54 Aligned_cols=361 Identities=13% Similarity=0.112 Sum_probs=232.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHH
Q 010630 33 LLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIA 112 (505)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~ 112 (505)
........+...+......+..|.+.+++|.|+.+.+++.++..++..+++++.|+++| |+|||+.++. +.+...
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~d----r~g~r~~l~~-~~~~~~ 94 (426)
T PRK12307 20 LFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLAD----KFGRKPLMMW-SIVAYS 94 (426)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCChHHHHH-HHHHHH
Confidence 33333444444455666666777778999999999999999999999999999999999 9999988877 445555
Q ss_pred HHHHHHhcccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHH
Q 010630 113 VAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNIL 192 (505)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~i 192 (505)
++.+...++++. +.+++.+++.|++.+..++...+++.|++|+++|+ ++.++...+.++|.++
T Consensus 95 ~~~~~~~~~~~~---------------~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~--~~~~~~~~~~~lg~~~ 157 (426)
T PRK12307 95 VGTGLSGLASGV---------------IMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKS--KASAFLVSGFGIGNII 157 (426)
T ss_pred HHHHHHHHHhHH---------------HHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhh--HhhhHHHHHHhHHHHH
Confidence 565666666555 78889999999999999999999999999999999 9999999999999999
Q ss_pred HhhccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCCCCCcchHHHH
Q 010630 193 GYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAF 272 (505)
Q Consensus 193 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (505)
++.+.+.+... .+||+.|++..+.. +..+......||+++..+++.+++ ++++ +...+..
T Consensus 158 ~~~l~~~l~~~---------------~~w~~~f~i~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~--~~~~--~~~~~~~ 217 (426)
T PRK12307 158 AAYFMPSFAEA---------------YGWRAAFFVGLLPV-LLVIYIRARAPESKEWEEAKLSGK--GKHS--QSAWSVF 217 (426)
T ss_pred HHHHHHHHccc---------------CCHHHHHHHHHHHH-HHHHHHHHHCCCChHHHHhhhhcc--cccc--ccchhhh
Confidence 88776553221 28999998754332 222222222334322111110000 0000 0001111
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHH---HHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHH
Q 010630 273 LWELFGTFRYFSGTIWIILIVTAL---TWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITS 349 (505)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 349 (505)
..+.++.+++ +.++........ ..........+.+.|+.+ .+.++ ...........++.+++.
T Consensus 218 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~----------~~~~~~~~~~~~~~~~g~ 283 (426)
T PRK12307 218 SLSMKGLFNR--AQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAG--EGFDT----------GVVSNLMTAAAFGTVLGN 283 (426)
T ss_pred hHHHHHHHhh--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCH----------HHHHHHHHHHHHHHHHHH
Confidence 1233445554 444432222111 111222344556666642 12111 111222334567788889
Q ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHH--HHHhhchhHhH
Q 010630 350 VLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPL--AITYSVPYALV 427 (505)
Q Consensus 350 ~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~ 427 (505)
++.+++.||++||+.+..+.++..+......... .. ... .+...+++.+. ....+....++
T Consensus 284 ~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 346 (426)
T PRK12307 284 IVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIP-------------QD--NYL--LLGACLFGLMATNVGVGGLVPKFL 346 (426)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHc-------------cc--cHH--HHHHHHHHHHHhcccHhHHHHHHH
Confidence 9999999999999998887776665554433321 11 111 12222233221 12223445678
Q ss_pred hhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhc
Q 010630 428 SIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFG 468 (505)
Q Consensus 428 ~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g 468 (505)
.|.+|+ +.+|+++|+.+....+++.++|.+.|++.+..|
T Consensus 347 ~~~~p~--~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g 385 (426)
T PRK12307 347 YDYFPL--EVRGLGTGLIYNLAATSGTFNSMAATWLGITMG 385 (426)
T ss_pred HHhCcH--HHHhhhhhHHHHHHhHHHHHHHHHHHHHHHccc
Confidence 899998 999999999999999999999999999999875
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-27 Score=231.94 Aligned_cols=379 Identities=14% Similarity=0.126 Sum_probs=256.3
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhH
Q 010630 26 AKVPLRKLLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFI 104 (505)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~ 104 (505)
++.+.++.+.++...++.+..+.....++..|. +.+|+++..+|.+..+..+.+++.+|+.|+++||+++|+||||+++
T Consensus 4 ~~l~~~~k~~Yg~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~i 83 (460)
T PRK11462 4 EVLSVKEKIGYGMGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWV 83 (460)
T ss_pred CcccHhHHHhhccchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhH
Confidence 356788888888888777777777777776664 7799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccc-cccchhhHhHHHH
Q 010630 105 VCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGK-DHRRTRVANAYFS 183 (505)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~ 183 (505)
+.+.+...+++.+++..|+. +......++.+...+...+......+..++.+|++++ ++|. +..++..
T Consensus 84 l~g~i~~~i~~~llf~~p~~---------s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt--~l~s~r~ 152 (460)
T PRK11462 84 LFGALPFGIVCVLAYSTPDL---------SMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRI--SLQSWRF 152 (460)
T ss_pred hHHHHHHHHHHHHHHhCCCC---------CcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHH--HHHHHHH
Confidence 98877777777777655542 2223345566667777899999999999999999995 5566 7999999
Q ss_pred HHHHHHHHHHhhccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCCC
Q 010630 184 LFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHE 263 (505)
Q Consensus 184 ~~~~~g~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 263 (505)
.+.++|..+++.+...+. .... .+....+|+....+.+++.+++..+.+...||+++.+.+
T Consensus 153 ~~~~iG~~~~~~~~~plv-----~~~g---~~~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE~~~~~~~----------- 213 (460)
T PRK11462 153 VLATAGGMLSTVLMMPLV-----NLIG---GDNKPLGFQGGIAVLSVVAFMMLAFCFFTTKERVEAPPT----------- 213 (460)
T ss_pred HHHHHHHHHHHHHHHHHH-----HHhC---CCchhhhHHHHHHHHHHHHHHHHHHHHhcceeccCCCcc-----------
Confidence 999988877766643210 0000 011123677777777766666666666666665322110
Q ss_pred CCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHH
Q 010630 264 QSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSV 343 (505)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (505)
+.+..++++..++| |.++.++...++..............|. .+.++. + ......+....+
T Consensus 214 -----~~~~~~~l~~~~~N--k~~~~l~~~~~~~~~~~~~~~~~~~y~~-~y~~g~-~----------~~~~~~l~~~~i 274 (460)
T PRK11462 214 -----TTSMREDLRDIWQN--DQWRIVGLLTIFNILAVCVRGGAMMYYV-TWILGT-P----------EVFVAFLTTYCV 274 (460)
T ss_pred -----CCCHHHHHHHHhCC--hHHHHHHHHHHHHHHHHHHHHhHhhhhh-hhhcCC-h----------HHHHHHHHHHHH
Confidence 01123345566677 7777776555555444333222222222 222221 0 011122334567
Q ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhch
Q 010630 344 VLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVP 423 (505)
Q Consensus 344 ~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 423 (505)
..+++.++++++.||+++|+.+..+..+..+...++.+. |.. +.+..++..++.|++.+...+..
T Consensus 275 ~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~--------------~~~-~~~~~~~~~~l~g~~~~~~~~l~ 339 (460)
T PRK11462 275 GNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFV--------------PMQ-ASITMFVFIFVIGVLHQLVTPIQ 339 (460)
T ss_pred HHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh--------------chh-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 777888999999999999988765554443333333332 211 22233444556677777777778
Q ss_pred hHhHhhhhccc-----ccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhc
Q 010630 424 YALVSIRTESL-----GLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFG 468 (505)
Q Consensus 424 ~~~~~~~~~~~-----~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g 468 (505)
++++.|..+.+ ++..|..++..+....+|..+++.+.|.+.+..|
T Consensus 340 ~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~G 389 (460)
T PRK11462 340 WVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGG 389 (460)
T ss_pred HHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 88888887732 3667888888889999999999999999998765
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-27 Score=232.06 Aligned_cols=392 Identities=14% Similarity=0.074 Sum_probs=258.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccc-cCCCCCCcchhHHHHHH
Q 010630 31 RKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDR-CTSRFGRRRPFIVCGAI 109 (505)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~-~~~r~Grr~~~~~~~~~ 109 (505)
|+.+.+....+............+|.++++.|.|..+++....+... . +..+++|.++|| ..+|+||||.++..+.+
T Consensus 12 ~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~~~~~~~-~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i 89 (491)
T PRK11010 12 PNSAILLILGFASGLPLALTSGTLQAWMTVENIDLKTIGFFSLVGQA-Y-VFKFLWSPLMDRYTPPFLGRRRGWLLATQL 89 (491)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-H-HHHHHHHHHHHcccccCCCCchHHHHHHHH
Confidence 44555566666677777788888999999999999999987433332 2 688999999995 33445999988876777
Q ss_pred HHHHHHHHHhcccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHH
Q 010630 110 SIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVG 189 (505)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 189 (505)
...++...+++.+.. ..++.+.+.+.+.+++.+...++..++..|++|+++|+ ++.++...+..+|
T Consensus 90 ~~~~~~~~~a~~~~~------------~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg--~~~~i~~~g~~lG 155 (491)
T PRK11010 90 LLLVAIAAMGFLEPG------------TQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERG--AGAAISVLGYRLA 155 (491)
T ss_pred HHHHHHHHHHHcCCc------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhH--HHHHHHHHHHHHH
Confidence 776666555443221 22366677777888888888899999999999999999 9999999999999
Q ss_pred HHHHhhccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCCCCCcchH
Q 010630 190 NILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVH 269 (505)
Q Consensus 190 ~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 269 (505)
.++++.++.++... ..+||..|++.+++.++..+..+ ..||+++.++++ +. .+
T Consensus 156 ~llg~~l~~~l~~~--------------~~GWr~~f~i~a~l~ll~~l~~~-~~~e~~~~~~~~-------~~-----~~ 208 (491)
T PRK11010 156 MLVSGGLALWLADR--------------YLGWQGMYWLMAALLIPCIIATL-LAPEPTDTIPVP-------KT-----LE 208 (491)
T ss_pred HHHHHHHHHHHHhc--------------ccCHHHHHHHHHHHHHHHHHHHH-hcCCCccccccc-------cc-----hh
Confidence 99998877663221 02899999998877666544443 467754321100 00 01
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHH
Q 010630 270 EAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITS 349 (505)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 349 (505)
++..+++.+.+++ +..+......++...+......+.++|+.++ ++.+..+ .+........++.+++.
T Consensus 209 ~~~~~~l~~~~~~--~~~~~~ll~~~l~~~~~~~~~~~~~~~l~~~-~G~s~~~---------~g~~~~~~g~i~~iiG~ 276 (491)
T PRK11010 209 QAVVAPLRDFFGR--NNAWLILLLIVLYKLGDAFAMSLTTTFLIRG-VGFDAGE---------VGLVNKTLGLLATIVGA 276 (491)
T ss_pred hhHHHHHHHHHcC--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCHHH---------HHHHHHHHHHHHHHHHH
Confidence 1112234444444 4455444444444444444445566665332 2222211 11111122345677889
Q ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhh
Q 010630 350 VLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSI 429 (505)
Q Consensus 350 ~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 429 (505)
++.|++.||+|+|+.+.++.++.++....+...... +. +.+.+.....+..+..+...+..+++..+
T Consensus 277 ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~-----------~~--~~~~l~~~~~l~~~~~g~~~~~~~a~~~~ 343 (491)
T PRK11010 277 LYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSIT-----------DK--NLYSMGAAVFFENLCGGMGTAAFVALLMT 343 (491)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc-----------cc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999888776665555544333222100 10 23333333444344444444555788888
Q ss_pred hhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHhcc
Q 010630 430 RTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIP 494 (505)
Q Consensus 430 ~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (505)
..++ +..++.+|+.+....+|..+++.+.|.+.|..| +...|.+.+++.+.+.+....+++
T Consensus 344 l~~~--~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G--~~~~f~~~~~~~l~~l~~~~~~~~ 404 (491)
T PRK11010 344 LCNK--SFSATQFALLSALSAVGRVYVGPVAGWFVEAHG--WPTFYLFSVAAAVPGLLLLLVCRQ 404 (491)
T ss_pred HcCC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--hHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888 889999999999999999999999999999876 667788888888887766665543
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-28 Score=246.08 Aligned_cols=394 Identities=14% Similarity=0.153 Sum_probs=245.1
Q ss_pred HHHHHhhhhHHHHhCCC--------chhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHHh
Q 010630 48 ALQLSLLTPYVQELGIP--------HAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIG 119 (505)
Q Consensus 48 ~~~~~~~~~~~~~~g~s--------~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~ 119 (505)
......++....+++.+ ..+.+++.+++.++..+++++.|+++| |+|||+.++....+ ..++.++..
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d----~~grr~~~~~~~~~-~~~~~~~~~ 119 (481)
T TIGR00879 45 GVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSD----RFGRKKSLLIIALL-FVIGAILMG 119 (481)
T ss_pred chhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhh----hhhhHHHHHHHHHH-HHHHHHHHH
Confidence 34445566666666665 899999999999999999999999999 99999888774444 444444443
Q ss_pred cccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhhcc--
Q 010630 120 LSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATG-- 197 (505)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l~-- 197 (505)
..++. ...+.+++.+++.|++.+...+...+++.|++|+++|+ +++++.+...++|..+++.++
T Consensus 120 ~~~~~------------~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~--~~~~~~~~~~~~G~~~~~~~~~~ 185 (481)
T TIGR00879 120 LAAFA------------LSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRG--ALTSLYQLAITFGILVAYGFGSG 185 (481)
T ss_pred Hhccc------------cchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhh--hhhhHHHHHHHHHHHHHHHHHHH
Confidence 33221 12257888999999999999999999999999999999 999999999999999999987
Q ss_pred -ccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcc--------cCCCCCcch
Q 010630 198 -SFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSE--------EGHEQSSDV 268 (505)
Q Consensus 198 -~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~--------~~~~~~~~~ 268 (505)
...... .+||+.|++.++..+ ..++..+++||++.....+++.++. +..++....
T Consensus 186 ~~~~~~~---------------~~w~~~f~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (481)
T TIGR00879 186 KVSLNNT---------------LGWRIPLGLQLIPAG-LLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKEL 249 (481)
T ss_pred hhcCCCC---------------ccHHHHHHHHHHHHH-HHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHH
Confidence 332111 289999999654444 4444556677765321111100000 000000000
Q ss_pred HH-----------------HHHHHHHHHHhc-ccHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCccccccc
Q 010630 269 HE-----------------AFLWELFGTFRY-FSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATG 330 (505)
Q Consensus 269 ~~-----------------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (505)
.+ +..++.++..++ .++.++..++..+...........+.+.+.. + ++.+.
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~g~~~--------- 318 (481)
T TIGR00879 250 LDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFE-N-AGVST--------- 318 (481)
T ss_pred HHHHHHHHHHHHHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHH-H-cCCCc---------
Confidence 00 000111111110 0122222222222222222233334444432 2 22222
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCC-ChhHHHHHHHH
Q 010630 331 VRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPP-NGIVIAALIIF 409 (505)
Q Consensus 331 ~~~~~~~~~~~~~~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 409 (505)
...........+..+++.++.+++.||+|||+.+..+..+.+++++++........+ +. .......+...
T Consensus 319 -~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~ 389 (481)
T TIGR00879 319 -DHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVT--------GSSKSSGNVAIVFI 389 (481)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccC--------CcccchhHHHHHHH
Confidence 112233444566778889999999999999999988877777776666532100000 00 00012222222
Q ss_pred HHHhhHHHH-HhhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHH
Q 010630 410 TILGGPLAI-TYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLI 488 (505)
Q Consensus 410 ~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 488 (505)
.+.+.+.+. ..+....++.|..|+ +.+|+++|+.+...+++++++|.+.|.+.+..+ +...|++.++++++++++
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~--~~~~f~~~~~~~~~~~i~ 465 (481)
T TIGR00879 390 LLFIAFFAMGWGPVPWVIVSEIFPL--SLRPKGISIAVAANWLANFIVGFLFPTMLESIG--VGGVFIFFGGLNVLGLIF 465 (481)
T ss_pred HHHHHHHHccccCeehhhhhccCCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--ccceehhHHHHHHHHHHH
Confidence 333333332 235666777999998 899999999999999999999999999999865 566677777777777777
Q ss_pred HHHhccCCCCCC
Q 010630 489 AILAIPRSSAQK 500 (505)
Q Consensus 489 ~~~~~~~~~~~~ 500 (505)
.++..||+++++
T Consensus 466 ~~~~~~~~~~~~ 477 (481)
T TIGR00879 466 VYFFLPETKGRT 477 (481)
T ss_pred HheecccCCCCC
Confidence 776677665543
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.6e-28 Score=236.98 Aligned_cols=378 Identities=15% Similarity=0.144 Sum_probs=240.2
Q ss_pred hHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHHhcccccccccCCCCCCc
Q 010630 56 PYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFR 135 (505)
Q Consensus 56 ~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (505)
++.++.|+|+.+.+++.+++.++..+++++.|+++| |+|||+.++. +.+...++.+.....++.
T Consensus 51 p~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~d----r~g~~~~~~~-~~~~~~~~~~~~~~~~~~----------- 114 (438)
T TIGR00712 51 PYLVEQGFSKGELGFALSAISIAYGFSKFIMGSVSD----RSNPRVFLPA-GLILSAAVMLLMGFVPWA----------- 114 (438)
T ss_pred HHHHHcCCCHhHhHHHHHHHHHHHHHhhhccchhhh----ccCCceehHH-HHHHHHHHHHHHhccccc-----------
Confidence 445557999999999999999999999999999999 9999987776 444445555444443221
Q ss_pred chhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhhcccc-ccccccccccccccc
Q 010630 136 PRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSF-SGWFKILPFTLTSAC 214 (505)
Q Consensus 136 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l~~~-~~~~~~~~~~~~~~~ 214 (505)
....+.+.+.+++.|++.+..+++....+.|++|+++|+ +++++.+...++|..+++.+.+. ....
T Consensus 115 ~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg--~~~~~~~~~~~~g~~~~~~l~~~~~~~~----------- 181 (438)
T TIGR00712 115 TSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERG--TIVSIWNCAHNIGGGIPPLLVLLGMAWF----------- 181 (438)
T ss_pred cchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccch--hHHHHHHHHHHhHhHHHHHHHHHHHHHh-----------
Confidence 012355667788889998888888899999999999999 99999999999999888876543 2111
Q ss_pred cccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCC-ccc--CCCCCcchHHHHHHHH--HHHHhcccHHHHH
Q 010630 215 NVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPF-SEE--GHEQSSDVHEAFLWEL--FGTFRYFSGTIWI 289 (505)
Q Consensus 215 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 289 (505)
.+||+.|++.+++.++..++.++++||+++....++.++ +.+ ++..++.+.+...++. ...+++ +.+|.
T Consensus 182 ----~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 255 (438)
T TIGR00712 182 ----NDWHAALYFPAICAIIVALFAFAMMRDTPQSCGLPPIEEYRNDYPDDYNEKAEQELTAKEIFMQYVLPN--KLLWY 255 (438)
T ss_pred ----hhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCCchhcccccccccccccccccchHHHHHHHHccC--chHHH
Confidence 289999999888877777777777787654321111000 000 0000000000011121 123455 77777
Q ss_pred HHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Q 010630 290 ILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISN 369 (505)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~~r~g~~~~~~~~~ 369 (505)
..+..++..........|.|.|+.+. .+.++.+ ..+......+..+++.++.+++.||+++++....+.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~p~~l~~~-~g~s~~~----------~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~ 324 (438)
T TIGR00712 256 IAIANVFVYLLRYGVLDWSPTYLKEV-KHFALDK----------SSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGV 324 (438)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHc-cCCChhh----------HHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHH
Confidence 76666666666666777888887532 2322221 123334456778889999999999996433222222
Q ss_pred HHHHHHHH--HHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhcccccchhHHHHHHHH
Q 010630 370 ILMALCFL--AMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNL 447 (505)
Q Consensus 370 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 447 (505)
........ +..... +.. +.+.........|++.............|..|+ +.+|++.|+.+.
T Consensus 325 ~~~~~~~~~~~~~~~~-------------~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~g~~~g~~~~ 388 (438)
T TIGR00712 325 FFMTLVTIAVIVYWMN-------------PAG-NPLVDMICMIVIGFLIYGPVMLIGLHALELAPK--KAAGTAAGFTGL 388 (438)
T ss_pred HHHHHHHHHHHHHHhc-------------CCC-chHHHHHHHHHHHHHHccHHHHHHHHHHHhcCh--hheeeehhhhch
Confidence 22211111 111110 110 122222333333433221111222456788888 899999999998
Q ss_pred HHHHHH-HHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHhccCCC
Q 010630 448 AIVIPQ-IVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPRSS 497 (505)
Q Consensus 448 ~~~~~~-~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (505)
...+++ .++|.+.|.+.|..| +...+.+..+..+++.+..+...+|+|
T Consensus 389 ~~~~gg~~~gp~l~G~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (438)
T TIGR00712 389 FGYLGGSVAASAIVGYTVDFFG--WDGGFMVMIGGSILAVILLIVVMIGEK 437 (438)
T ss_pred HHHhhhhhhcchhHHHHHHhcc--chHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 888774 689999999999876 667777777777777777777777654
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-27 Score=230.62 Aligned_cols=386 Identities=14% Similarity=0.108 Sum_probs=234.2
Q ss_pred HHHHHHHhhhhHH-HHh--CCCchhHHHHH-----HHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHH
Q 010630 46 GWALQLSLLTPYV-QEL--GIPHAWASIIW-----LCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLL 117 (505)
Q Consensus 46 ~~~~~~~~~~~~~-~~~--g~s~~~~g~~~-----~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~ 117 (505)
.........+.+. +++ +.++. .+++. ++..++..+++++.|+++| |+|||+.++. +.....++.++
T Consensus 37 d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~D----r~Grr~~l~~-~~~~~~~~~~~ 110 (438)
T PRK09952 37 DFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGD----RLGRKRMLML-TVWMMGIATAL 110 (438)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHH----hhccHHHHHH-HHHHHHHHHHH
Confidence 3333333444444 444 66665 45543 3455667788899999999 9999998877 56666667777
Q ss_pred HhcccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhhcc
Q 010630 118 IGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATG 197 (505)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l~ 197 (505)
+++++++.. ......+.+++.|+++|++.+..++...+++.|++|+++|+ +..+....+..+|..++..+.
T Consensus 111 ~~~~~~~~~-------~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg--~~~~~~~~g~~~G~~l~~~~~ 181 (438)
T PRK09952 111 IGLLPSFST-------IGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKA--FYSSGVQVGYGVGLLLSTGLV 181 (438)
T ss_pred HhcCCcHHH-------HHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCc--HHHHHHHHHHHHHHHHHHHHH
Confidence 778777510 00111235778899999999999999999999999999999 888988888888888887665
Q ss_pred ccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCCCCCcchHHHHHHHHH
Q 010630 198 SFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELF 277 (505)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (505)
..+.. ..... .....+||+.|++.++..++ .+......||+++..+++.+.+ +.+ ++.+..+
T Consensus 182 ~~l~~-----~~~~~--~~~~~gWr~~f~~~~~~~l~-~~~l~~~~~es~~~~~~~~~~~---~~~----~~~~~~~--- 243 (438)
T PRK09952 182 SLISM-----MTTDE--QFLSWGWRIPFLFSIVLVLI-ALWVRNGMEESAEFEQQQHEQA---AAK----KRIPVIE--- 243 (438)
T ss_pred HHHHH-----hCCHH--HhhccChHHHHHHHHHHHHH-HHHHHHhCCCChhHHHHHhhcc---ccc----ccCCHHH---
Confidence 43110 00000 00013899999988765433 3333334556543211110000 000 0011111
Q ss_pred HHHhcccHHHHHHH-HHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 010630 278 GTFRYFSGTIWIIL-IVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLC 356 (505)
Q Consensus 278 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~ 356 (505)
...++ ++.+... ...+......+....+.+.|+.++ ++.+.. ..... ....++...++.++.|+++
T Consensus 244 ~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~-~g~s~~---------~~~~~-~~~~g~~~~i~~~~~g~l~ 310 (438)
T PRK09952 244 ALLRH--PGAFLKIIALRLCELLTMYIVTAFALNYSTQN-LGLPRE---------LFLNI-GLLVGGLSCLTIPCFAWLA 310 (438)
T ss_pred HHHHc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCHH---------HHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 12233 3333332 233344444555556677776432 222211 01111 2223555677788999999
Q ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhccccc
Q 010630 357 RKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGL 436 (505)
Q Consensus 357 ~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 436 (505)
||+|||+.+..+.++..++...+.... ......+..+....+.+++.+...+..++++.|.+|. +
T Consensus 311 Dr~grr~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~--~ 375 (438)
T PRK09952 311 DRFGRRRVYITGALIGTLSAFPFFMAL-------------EAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGA--S 375 (438)
T ss_pred HHhCchHHHHHHHHHHHHHHHHHHHHH-------------HcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCc--c
Confidence 999999988877665554443332221 0000233334445555777777777788999999999 8
Q ss_pred chhHHHHHHHHH-HHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHh
Q 010630 437 GQGLSLGVLNLA-IVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILA 492 (505)
Q Consensus 437 ~~g~~~g~~~~~-~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 492 (505)
.|++..|+.+.. ..+++.++|.+.|++.+..++++...+.+.+++.+++.+..+..
T Consensus 376 ~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~ 432 (438)
T PRK09952 376 YRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLM 432 (438)
T ss_pred hhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence 898888885544 55899999999999999765445566666777777776555433
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-27 Score=227.84 Aligned_cols=364 Identities=10% Similarity=-0.008 Sum_probs=260.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHH-HHH
Q 010630 36 VASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISI-AVA 114 (505)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~-~~~ 114 (505)
+....+....++....+++|.+++++|.|..++|++.++..+...++++++|.++| |+|||+.......... ...
T Consensus 9 l~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d----~~~~~~~~~~~~~~~~~l~~ 84 (382)
T TIGR00902 9 LALGFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIK----DANHIIIALRLLALASAIFA 84 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCcHHHHHHHHHHHHHHHH
Confidence 34445555567788889999999999999999999999999999999999999999 8887543322111111 111
Q ss_pred HHHHhcccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHh
Q 010630 115 VLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGY 194 (505)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~ 194 (505)
......++++ +.+++.+.+.+.+.+...+...++..|. +++|+ +..+......++|.++++
T Consensus 85 ~~~~~~~~~~---------------~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~--~~~g~~~~~~slG~~~g~ 145 (382)
T TIGR00902 85 AAFSAGAHNA---------------WLLFIAIGLFALFFSAGMPIGDALANTW--QKQFG--LDYGKVRLIGSAAFIIGS 145 (382)
T ss_pred HHHHHhhhhH---------------HHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcC--CCccHHHHHHHHHHHHHH
Confidence 1222233443 6777788888888888888888887664 46678 889999999999999999
Q ss_pred hccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCCCCCcchHHHHHH
Q 010630 195 ATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLW 274 (505)
Q Consensus 195 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (505)
.+++.+.... +||..|.+...... ..++.. ..+|++++++++ ++ +++ +..+
T Consensus 146 ~l~g~l~~~~---------------g~~~~f~~~~~~~~-~~~~~~-~~~~~~~~~~~~--~~---~~~-------~~~~ 196 (382)
T TIGR00902 146 ALFGGLIGMF---------------DEQNILAILTAGLA-FMLIGF-LIKPTIPPKDAI--PE---DES-------QGDS 196 (382)
T ss_pred HHHHHHHHHc---------------ChhHHHHHHHHHHH-HHHHHH-HcCCCCCCCccc--cc---ccc-------ccch
Confidence 9888743332 89998887764432 222222 333322111111 00 000 0122
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHH
Q 010630 275 ELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEK 354 (505)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 354 (505)
+..+.+|+ |+++...+..++.+.+...+..+.+.|+. + .+.+... .........+..++..++.++
T Consensus 197 ~~~~~l~~--~~~~~~l~~~~l~~~~~~~~~~~~~~~l~-~-~g~s~~~----------~g~l~~~~~~~~i~~~~~~~~ 262 (382)
T TIGR00902 197 AFIALLKN--PMNLRFLAAVCLIQGAHAAYYGFSAIYWQ-A-AGISASA----------TGLLWGIGVLAEIIIFAFSNK 262 (382)
T ss_pred hHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-CCCCHhH----------HHHHHHHHHHHHHHHHHHhHH
Confidence 34566677 88888888888877777777888888874 3 3322211 112233456777778889999
Q ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhccc
Q 010630 355 LCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESL 434 (505)
Q Consensus 355 l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 434 (505)
+.||+|+|+.+.++.++..+...++.+.+ +.+.++....+.|+.++...+....++++. |+
T Consensus 263 l~~r~g~~~~l~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~- 323 (382)
T TIGR00902 263 LFQNCSARDLLLISAIACVGRWAIIGAIE-----------------AFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PG- 323 (382)
T ss_pred HHhhCCHHHHHHHHHHHHHHHHHHHHhHh-----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CH-
Confidence 99999999999999999999888877663 567788889999999999998888899987 77
Q ss_pred ccchhHHHHHHH-HHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHH
Q 010630 435 GLGQGLSLGVLN-LAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLI 488 (505)
Q Consensus 435 ~~~~g~~~g~~~-~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 488 (505)
+++++.+++++ ....+|..++|.++|++.|..| . ..|...+++.+++.++
T Consensus 324 -~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g--~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 324 -SEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLG--A-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--H-HHHHHHHHHHHHHHHH
Confidence 88899999987 4677999999999999999985 3 5677777777666543
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-27 Score=227.72 Aligned_cols=361 Identities=12% Similarity=0.049 Sum_probs=241.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHH
Q 010630 32 KLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISI 111 (505)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~ 111 (505)
.++.+....+...+......+++|.+.+++|.|..+.|++.+.+.++..+++++.|+++| |+|||+.+.. +.+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~d----r~g~k~~~~~-~~~~~ 81 (381)
T PRK03633 7 PVLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIK----RIGFNRSYYL-ASLIF 81 (381)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHH----HHHHHHHHHH-HHHHH
Confidence 355555566666677778889999999999999999999999999999999999999999 9999998877 45555
Q ss_pred HHHHHHHhcccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHH
Q 010630 112 AVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNI 191 (505)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 191 (505)
.++...+.+++++ +.+++.+++.|++.+...+...+.+.|..++++|+ ++++......++|..
T Consensus 82 ~~~~~~~~~~~~~---------------~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~ 144 (381)
T PRK03633 82 AAGCAGLGLMVGF---------------WSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRG--RLLAAYMMVYYLGTV 144 (381)
T ss_pred HHHHHHHHHhccH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHH--HHHHHHHHHHHHHHH
Confidence 5566666666665 77888899999999988888888888889999999 999999999999999
Q ss_pred HHhhccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCCCCCcchHHH
Q 010630 192 LGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEA 271 (505)
Q Consensus 192 ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (505)
+|+.+++.+.... .+.. .+..+........+. +.+.+++++ ++ + + .+
T Consensus 145 ~g~~~~~~l~~~~---------------~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~-~~-------~-~-----~~- 191 (381)
T PRK03633 145 LGQLLVSKVSTEL---------------MSVL-PWVTGLVLAAILPLL--FTRILNQQA-EN-------H-D-----ST- 191 (381)
T ss_pred HHHHHHhcccccc---------------cchH-HHHHHHHHHHHHHHH--HhcccCCCC-CC-------C-C-----CC-
Confidence 9999988732211 1111 122221111111111 112211110 00 0 0 00
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHH
Q 010630 272 FLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVL 351 (505)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 351 (505)
+..+.+++ |.++......+...........+.+.|+.+ .+.+. ...........+..+++.+.
T Consensus 192 ---~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~--~g~s~----------~~~g~~~~~~~~~~~~~~~~ 254 (381)
T PRK03633 192 ---SIWPMLKL--RQARLGVNGCIISGIVLGSLYGLMPLYLNH--QGMSD----------ASIGFWMALLVSAGILGQWP 254 (381)
T ss_pred ---CHHHHHHh--cchHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCH----------HHHHHHHHHHHHHHHHHHhh
Confidence 12233455 455543333333333334444556766632 12111 11112233456677888899
Q ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhh
Q 010630 352 MEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRT 431 (505)
Q Consensus 352 ~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 431 (505)
.+++.||+++|+.+..+..+..++....... ........+.|++.....+...+.+.|..
T Consensus 255 ~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~--------------------~~~~~~~~l~g~~~~~~~p~~~~~~~~~~ 314 (381)
T PRK03633 255 IGRLADRFGRLLVLRVQVFVVILGSIAMLSQ--------------------AAMAPALFILGAAGFTLYPVAMAWACEKV 314 (381)
T ss_pred hHHHHHHcCcHHHHHHHHHHHHHHHHHHhhh--------------------HHHHHHHHHHHHHHHhHHHHHHHHHHccC
Confidence 9999999999998888777766655433211 11122334456555566677778888888
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHH
Q 010630 432 ESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLI 488 (505)
Q Consensus 432 ~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 488 (505)
|+ ++++...+..+...++|+.++|.++|++.|..| ....|.+.+.+.++..+.
T Consensus 315 ~~--~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g--~~~~f~~~~~~~l~~~~~ 367 (381)
T PRK03633 315 EH--HELVAMNQALLLSYTVGSLLGPSFTAMLMQNYS--DNLLFIMIASVSFIYLLM 367 (381)
T ss_pred CH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHHH
Confidence 87 777888888888899999999999999999976 666777776666655433
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.7e-27 Score=229.43 Aligned_cols=385 Identities=11% Similarity=0.071 Sum_probs=224.4
Q ss_pred HHHHHHHHHHHHHhhhhHHHHhC---CCchhH---HHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHH
Q 010630 40 AGGIQFGWALQLSLLTPYVQELG---IPHAWA---SIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAV 113 (505)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~g---~s~~~~---g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~ 113 (505)
.+...+.........|.+.++++ .+..+. +.+.+...++..++++++|+++| |+||||.++. +.+...+
T Consensus 31 ~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~D----r~Grr~~l~~-~~~~~~~ 105 (432)
T PRK10406 31 NLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIAD----KHGRKKSMLI-SVCMMCF 105 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCcHHHHHH-HHHHHHH
Confidence 33333444454445555567774 455543 34445555666699999999999 9999998877 5555666
Q ss_pred HHHHHhcccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHH
Q 010630 114 AVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILG 193 (505)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig 193 (505)
+.+.+++++++.+ ........+++.|+++|++.+..++...++++|++|+++|+ ++.++.......|.+++
T Consensus 106 ~~~~~~~~~~~~~-------~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg--~~~~~~~~~~~~G~~~~ 176 (432)
T PRK10406 106 GSLVIACLPGYET-------IGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKG--FYASFQYVTLIGGQLLA 176 (432)
T ss_pred HHHHHhhcCCchh-------HHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCccc--HHHHHHHHHHHHHHHHH
Confidence 6666666665410 00122346788999999999999999999999999999999 88888888888888777
Q ss_pred hhccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCCCCCcchHHHHH
Q 010630 194 YATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFL 273 (505)
Q Consensus 194 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (505)
+.+...+... .+ +. .....+||+.|++.++..++. ++.....||+++.+.++ .+ ++.
T Consensus 177 ~~~~~~~~~~--~~---~~--~~~~~gWr~~F~i~~~~~ll~-~~~~~~~~e~~~~~~~~--------~~-----~~~-- 233 (432)
T PRK10406 177 LLVVVVLQQT--LE---DA--ELREWGWRIPFALGAVLAVVA-LWLRRQLDETSQQETRA--------LK-----EAG-- 233 (432)
T ss_pred HHHHHHHHHh--CC---HH--HHhccchHHHHHHHHHHHHHH-HHHHhcCCCCchHHHhh--------hc-----ccc--
Confidence 7654331110 00 00 000138999999877655443 33333455543221100 00 011
Q ss_pred HHHHHHHhcccHHHHHHHHHHHH-HHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHH
Q 010630 274 WELFGTFRYFSGTIWIILIVTAL-TWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLM 352 (505)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 352 (505)
++++.+++ ++.+.......+ .....+.+..|.+.|+.+. ++.+. ...........+...++.++.
T Consensus 234 -~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~-~g~s~----------~~~~~~~~i~~~~~~i~~~~~ 299 (432)
T PRK10406 234 -SLKGLWRN--RRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNT-AGMHA----------NVASGIMTAALFVFMLIQPLI 299 (432)
T ss_pred -cHHHHHhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCH----------HHHHHHHHHHHHHHHHHHHHH
Confidence 22334455 555554443333 2445556667778877432 22111 111122233445556777888
Q ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhc
Q 010630 353 EKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTE 432 (505)
Q Consensus 353 g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 432 (505)
|+++||++||+.+..+..+.++....+.... . + .. +....+....+..+..+......+.+.+|.+|
T Consensus 300 G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~--~-~--------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp 366 (432)
T PRK10406 300 GALSDKIGRRTSMLCFGSLAALFTVPILSAL--Q-N--------VS--SPYAAFGLVMCALLIVSFYTSISGILKAEMFP 366 (432)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHHHHHHHHH--H-c--------CC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 9999999999987766554433322221111 0 0 00 12222222222222333333456678899999
Q ss_pred ccccchhHHHHHHHHHHHH-HHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHh
Q 010630 433 SLGLGQGLSLGVLNLAIVI-PQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILA 492 (505)
Q Consensus 433 ~~~~~~g~~~g~~~~~~~~-~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 492 (505)
+ +.|++++|+.+...++ .+...|.+.+.+ +..| .+...++..++..+++.+..++.
T Consensus 367 ~--~~r~t~~g~~~~~g~~~~g~~~p~~~~~l-~~~g-~~~~~~~~~~~~~~i~~~~~~~l 423 (432)
T PRK10406 367 A--QVRALGVGLSYAVANALFGGSAEYVALSL-KSIG-METAFFWYVTLMAVVAFLVSLML 423 (432)
T ss_pred C--CccchhhhHHHHHHHHHHHhHHHHHHHHH-HHhC-CCcHHHHHHHHHHHHHHHHHHHh
Confidence 9 9999999998876554 344577777754 5544 24445555666666666555543
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-27 Score=235.33 Aligned_cols=379 Identities=11% Similarity=0.053 Sum_probs=231.3
Q ss_pred HHHHHHHHHHHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHHhcc
Q 010630 42 GIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLS 121 (505)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~ 121 (505)
...+......+++|.+.+++|+|..+.+++.+...++..+++++.|+++| |+|||+.+.. +.+...++.++..++
T Consensus 47 ~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~d----r~G~r~~~~~-~~~~~~~~~~~~~~~ 121 (476)
T PLN00028 47 TCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCD----LYGPRYGSAF-LLMLTAPAVFCMSLV 121 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCChHHHHH-HHHHHHHHHHHHHHh
Confidence 33344445566778888999999999999999999999999999999999 9999987776 445555566556565
Q ss_pred cccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhhcccccc
Q 010630 122 ADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSG 201 (505)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l~~~~~ 201 (505)
++. +.+++.+++.|++.+.. .+...++.|++|+++|+ +++++.....++|..+++.+.+.+.
T Consensus 122 ~s~---------------~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~rg--~a~g~~~~~~~~g~~~~~~~~~~i~ 183 (476)
T PLN00028 122 SSA---------------TGFIAVRFFIGFSLATF-VSCQYWMSTMFNGKIVG--TANGIAAGWGNLGGGVTQLLMPLVF 183 (476)
T ss_pred cCH---------------HHHHHHHHHHHHHHHhh-HHHHHHHHHhcChhhee--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554 56667788888887754 44567889999999999 9999988877888877766654311
Q ss_pred ccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCCCCCcchHHHHHHHHHHHHh
Q 010630 202 WFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFR 281 (505)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (505)
. .+... ......+||+.|++.+++.++..++.+++.++.|+...++ .+ ++.+. ++++..+.+++.++
T Consensus 184 ~-----~~~~~-~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~~~~~~---~~-~~~~~---~~~~~~~~~~~~~~ 250 (476)
T PLN00028 184 P-----LIKDA-GAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPDGNYRE---LK-KSGTM---PKDSFSKVLRYGVT 250 (476)
T ss_pred H-----HHHhc-CCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCCCchhh---HH-hcCcc---ccccHHHHHHHHHc
Confidence 1 00000 0000128999999998887777666655554443321110 00 00000 01111233445556
Q ss_pred cccHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 010630 282 YFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGA 361 (505)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~~r~g~ 361 (505)
+ +++|.+.+..+........+..+.+.|+.++ ++.+. ...........++..++.++.|+++||++|
T Consensus 251 ~--~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-~g~s~----------~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~ 317 (476)
T PLN00028 251 N--YRTWILALTYGYSFGVELTMDNIIAEYFYDR-FGLSL----------ETAGAIAASFGLMNLFARPAGGYLSDVAAR 317 (476)
T ss_pred C--chhHHHHHHHHHHHHHHHHHHhHHHHHHHHh-cCCCH----------HHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 6 6666666555444444444555667776432 22221 111233334677788999999999999986
Q ss_pred hH-------HHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhccc
Q 010630 362 GF-------IWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESL 434 (505)
Q Consensus 362 ~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 434 (505)
|+ ...+...+.++...++.... +.+...+..++.+++.+......+++..+..|
T Consensus 318 r~~~~~r~~~~~~~~~l~~i~~~~~~~~~-----------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-- 378 (476)
T PLN00028 318 RFGMRGRLWALWIVQTLGGVFCIWLGRAN-----------------SLGAAIVVMILFSIFVQAACGATFGIVPFVSR-- 378 (476)
T ss_pred hcCcchhHHHHHHHHHHHHHHHHHhcccc-----------------hHHHHHHHHHHHHHHHHHhhhhhcccCcccCh--
Confidence 52 22222222222222222111 23333444455555554444445555565543
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhc-CCCchHHHHHHHHHHHHHHHHHHhc
Q 010630 435 GLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFG-GGNSPAFAVGGISALAGGLIAILAI 493 (505)
Q Consensus 435 ~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (505)
+++|+..|+.+....+|..++|.+. +..+ +++...|.+.+++.+++.++.++.+
T Consensus 379 -~~~g~~~g~~~~~g~lg~~i~~~l~----~~~~~~~y~~~f~~~~~~~~i~~~~~~~~~ 433 (476)
T PLN00028 379 -RSLGVISGLTGAGGNVGAVLTQLLF----FTGSSYSTETGISLMGVMIIACTLPVAFIH 433 (476)
T ss_pred -hhchhhhhhhhccccHHHHHHHHHH----HhcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence 7899999998776666666666554 3211 2356778888888888776665553
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.3e-28 Score=239.93 Aligned_cols=392 Identities=15% Similarity=0.126 Sum_probs=236.7
Q ss_pred hCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHHhcccccccccCCCCCCcchhHH
Q 010630 61 LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIA 140 (505)
Q Consensus 61 ~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (505)
++.++.+.+++.+++.++..++++++|+++| |+|||++++....+ ..++.+...++..... ...........
T Consensus 50 ~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~d----r~Grr~~~~~~~~l-~~i~~~~~~~~~~~~~---~~~~~~~~~~~ 121 (479)
T PRK10077 50 ESAANSLLGFCVASALIGCIIGGALGGYCSN----RFGRRDSLKIAAVL-FFISALGSAWPEFGFT---SIGPDNTGYVP 121 (479)
T ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHH----HhccHHHHHHHHHH-HHHHHHHHHhhccccc---cccccchhHHH
Confidence 3889999999999999999999999999999 99999998885444 4444444433210000 00011123346
Q ss_pred HHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhhccccccccccccccccccccccccc
Q 010630 141 VFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCAN 220 (505)
Q Consensus 141 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~ 220 (505)
.+++.|++.|++.+...+...++++|++|+++|+ +++++.+....+|..+++.++...... ...... ...+
T Consensus 122 ~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg--~~~~~~~~~~~~G~~~~~~~~~~~~~~-----~~~~~~--~~~g 192 (479)
T PRK10077 122 EFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRG--KLVSFNQFAIIFGQLVVYFVNYFIARS-----GDASWL--NTDG 192 (479)
T ss_pred HHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhh--HHHHHHHHHHHHHHHHHHHHHHHHhcc-----Cccccc--ccCC
Confidence 6789999999999999999999999999999999 999999999999998887765442110 000000 1138
Q ss_pred hhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCccc---CCCCCcchHHHHHHHHHHHHhcc---cHHHHHHHHHH
Q 010630 221 LKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEE---GHEQSSDVHEAFLWELFGTFRYF---SGTIWIILIVT 294 (505)
Q Consensus 221 ~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 294 (505)
||+.|++.++..++.. +..+++||+|+....+++.++.+ ++.....+.+...++..+..++. .+..+......
T Consensus 193 Wr~~f~~~~~~~~~~~-~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (479)
T PRK10077 193 WRYMFASEAIPALLFL-MLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLATQALQEIKHSLDHGRKTGGKLLMFGVGV 271 (479)
T ss_pred hHHHHHHHHHHHHHHH-HHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChhHHHHHHHHHHHHHHhhhhhhhhcchhHHH
Confidence 9999998876666654 44567888765321111111000 00000001111122222222110 01111110000
Q ss_pred HH---------HHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Q 010630 295 AL---------TWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIW 365 (505)
Q Consensus 295 ~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~~r~g~~~~~ 365 (505)
+. ...+......|.+.+.. + .+.+.. .+.+.....++..+++.++.+++.||+|||+.+
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~p~i~~-~-~g~~~~----------~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~ 339 (479)
T PRK10077 272 IVIGVMLSVFQQFVGINVVLYYAPEIFK-T-LGASTD----------IALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQ 339 (479)
T ss_pred HHHHHHHHHHHHHhChhHHHHHHHHHHH-H-cCCCCc----------hHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHH
Confidence 00 00111112223333321 1 221111 112333445667788889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHH-hhchhHhHhhhhcccccchhHHHHH
Q 010630 366 GISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAIT-YSVPYALVSIRTESLGLGQGLSLGV 444 (505)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~g~ 444 (505)
..+.++.+++.+++..... +.. .........++++.+.+.. .+..+.+++|.+|+ ++||++.|+
T Consensus 340 i~~~~~~~v~~~~l~~~~~------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~--~~r~~~~g~ 404 (479)
T PRK10077 340 IIGALGMAIGMFSLGTAFY------------TQA-PGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPN--AIRGKALAI 404 (479)
T ss_pred HHhHHHHHHHHHHHHHHHh------------cCc-ccHHHHHHHHHHHHHHhccccchhHHHhHhhCCh--hHHHHHHHH
Confidence 9999888888777654420 010 1122223334444444432 25678899999998 999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhH------hhhcCCCchHHHHHHHHHHHHHHHHHHhccCCCCC
Q 010630 445 LNLAIVIPQIVVSMGSGPWD------QLFGGGNSPAFAVGGISALAGGLIAILAIPRSSAQ 499 (505)
Q Consensus 445 ~~~~~~~~~~i~~~~~g~l~------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (505)
.+....+++++++.+.+.+. +..+ ....|.+.++..+++.++.+.+.||++++
T Consensus 405 ~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 463 (479)
T PRK10077 405 AVAAQWIANYFVSWTFPMMDKNSWLVAHFH--NGFSYWIYGCMGVLAALFMWKFVPETKGK 463 (479)
T ss_pred HHHHHHHHHHHHHHHhHHHHhccchhhhcc--CccHHHHHHHHHHHHHHHHHhccccCCCC
Confidence 99999999999877766544 4444 35567777777777776666667766554
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-26 Score=223.62 Aligned_cols=337 Identities=15% Similarity=0.080 Sum_probs=225.1
Q ss_pred HHHHHHHHHHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHHhccc
Q 010630 43 IQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSA 122 (505)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~ 122 (505)
...+.......+|.+.+++|.|..+.++..+++.++..+++++.|+++| |+|||+.++. +.+...++.......+
T Consensus 15 ~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~D----r~g~r~~l~~-~~~~~~i~~~~~~~~~ 89 (392)
T PRK10473 15 YPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIAD----RSGRKPVAIP-GAALFIIASLLCSLAE 89 (392)
T ss_pred HHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHH----HhCChHHHHH-HHHHHHHHHHHHHHhC
Confidence 3355566667889999999999999999999999999999999999999 9999987776 4455556666665555
Q ss_pred ccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhhccccccc
Q 010630 123 DIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGW 202 (505)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l~~~~~~ 202 (505)
+. +.+++.+++.|++.+...+...+++.|.+|+++|+ ++.++.+....+|..+++.+++.+..
T Consensus 90 ~~---------------~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~--~~~~~~~~~~~i~~~~~~~i~~~l~~ 152 (392)
T PRK10473 90 TS---------------SLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRA--KVLSLLNGITCIIPVLAPVLGHLIML 152 (392)
T ss_pred cH---------------HHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 54 66777888999998888888999999999999999 99999999999999999888766322
Q ss_pred cccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCCCCCcchHHHHHHHHHHHHhc
Q 010630 203 FKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRY 282 (505)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (505)
. .+|++.|++.+++..+..++..+..||++++++++ + +...++.++.+++
T Consensus 153 ~---------------~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-------~--------~~~~~~~~~~~~~ 202 (392)
T PRK10473 153 K---------------FPWQSLFYTMAAMGILVLLLSLFILKETRPARAPA-------A--------SSKPRENSESLLN 202 (392)
T ss_pred C---------------cChHHHHHHHHHHHHHHHHHHHHHcCCCCCcccCC-------c--------cchHHHHHHHHhC
Confidence 1 28999999988777777777667777764322110 0 0111233445555
Q ss_pred ccHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcch
Q 010630 283 FSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAG 362 (505)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~~r~g~~ 362 (505)
++++.......+.......+..+.+.++.+ .++.++. ..........+..+++.++.+++.||+|+|
T Consensus 203 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~----------~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~ 269 (392)
T PRK10473 203 --RFFLSRLVITTLSVTVILTFVNTSPVLLME-QMGFSRG----------EYAIIMALTAGVSMTVSFSTPFALGIFKPR 269 (392)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHhCHHHHHH-HcCCCHH----------HHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 555554444433333333344444544432 2222211 112223345677788889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhcccccchhHHH
Q 010630 363 FIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSL 442 (505)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 442 (505)
+.+..+..+..++...+.... ..+.......+.+.+.+...+. ....+..|.+ ++.|.+
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~l~~~g~~~~~~~--~~~~~~~~~~-~~~g~~- 328 (392)
T PRK10473 270 TLMLTSQVLFLAAGITLALSP-----------------SHAVSLFGITLICAGFSVGFGV--AMSQALGPFS-LRAGVA- 328 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHhHH--HHHHHhccCc-ccccHH-
Confidence 999888887777776665542 1222233333333333333322 2334444541 333444
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHhhhc
Q 010630 443 GVLNLAIVIPQIVVSMGSGPWDQLFG 468 (505)
Q Consensus 443 g~~~~~~~~~~~i~~~~~g~l~~~~g 468 (505)
+....+++.+++.+++++.+..|
T Consensus 329 ---~~~~~~~~~~g~~~~~~l~~~~g 351 (392)
T PRK10473 329 ---SSTLGIAQVCGSSLWIWLAAVLG 351 (392)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHhc
Confidence 34456777888888888888876
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.9e-28 Score=233.38 Aligned_cols=356 Identities=14% Similarity=0.057 Sum_probs=237.7
Q ss_pred HHHHHHHHHHHHHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHHh
Q 010630 40 AGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIG 119 (505)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~ 119 (505)
.+...........+.|.+.+++|.++.+.+++.++..++..+++++.|+++| |+|||+.++. +.+...++.++..
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~g~~~~~~~-~~~~~~~~~~~~~ 100 (398)
T TIGR00895 26 MLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLAD----RIGRKRVLLW-SILLFSVFTLLCA 100 (398)
T ss_pred HHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHH----HhhhHHHHHH-HHHHHHHHHHHHH
Confidence 3333344455566778888999999999999999999999999999999999 9999987777 4444555555555
Q ss_pred cccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhhcccc
Q 010630 120 LSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSF 199 (505)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l~~~ 199 (505)
+.++. +.+++.+++.|++.+...+...+++.|++|+++|+ +++++......+|..+++.+++.
T Consensus 101 ~~~~~---------------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~--~~~~~~~~~~~~g~~~~~~~~~~ 163 (398)
T TIGR00895 101 LATNV---------------TQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRG--TAVGLMFCGYPIGAAVGGFLAGW 163 (398)
T ss_pred Hccch---------------HHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhc--hhHhhHhhHHHHHHHHHHHHHHH
Confidence 55554 67778889999999999999999999999999999 99999999999999999988876
Q ss_pred ccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCC--------------cccCCCCC
Q 010630 200 SGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPF--------------SEEGHEQS 265 (505)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~--------------~~~~~~~~ 265 (505)
+.... +|++.|++.+++..+..++.....||+++...++++++ +.++..++
T Consensus 164 l~~~~---------------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (398)
T TIGR00895 164 LIPVF---------------GWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPE 228 (398)
T ss_pred Hhhcc---------------cceeehhhhhhHHHHHHHHHHHhCCCCChHHHhcCHHHHHHHHHHHHHhccccccccccc
Confidence 33222 78888888876666666666667777653211110000 00000000
Q ss_pred cchHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHH
Q 010630 266 SDVHEAFLWELFGTFRYF--SGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSV 343 (505)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (505)
++++++..++..+.+++. .+..+.+....++..........+.+.+. ++ ++.+.. ..........+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~g~~~~----------~~~~~~~~~~~ 296 (398)
T TIGR00895 229 QKATQGTKRSVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLM-VE-LGFSLS----------LAATGGALFNF 296 (398)
T ss_pred cccccchhhHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-cCCCHH----------HHHHHHHHHHH
Confidence 000111112222222221 12333333333344444444455555333 22 222211 11233344567
Q ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhch
Q 010630 344 VLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVP 423 (505)
Q Consensus 344 ~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 423 (505)
...++.++.+++.||+++|+...... +..+...+..... . +.+..+...++.|++.+...+..
T Consensus 297 ~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~-------------~---~~~~~~~~~~~~g~~~~~~~~~~ 359 (398)
T TIGR00895 297 GGVIGSIIFGWLADRLGPRVTALLLL-LGAVFAVLVGSTL-------------F---SPTLLLLLGAIAGFFVNGGQSGL 359 (398)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHH-HHHHHHHHHHHHh-------------h---CHHHHHHHHHHHHHHHHHHHHHH
Confidence 78889999999999999984444333 3333322222211 1 34556667778888888888889
Q ss_pred hHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhh
Q 010630 424 YALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPW 463 (505)
Q Consensus 424 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l 463 (505)
.+++.|.+|+ +++|+++|+.+....++..++|.+.|++
T Consensus 360 ~~~~~~~~~~--~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 360 YALMALFYPT--AIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHhhcCCH--HHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 9999999999 9999999999999999999999999875
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=9e-28 Score=232.03 Aligned_cols=357 Identities=15% Similarity=0.097 Sum_probs=240.7
Q ss_pred HHHHHHHHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHHhccccc
Q 010630 45 FGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADI 124 (505)
Q Consensus 45 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~ 124 (505)
..........|.+.+++|.|..+.+++.++..++..+++++.|+++| |+|||+.++. +.+...++.++..+++++
T Consensus 9 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d----r~g~r~~~~~-~~~~~~~~~~~~~~~~~~ 83 (379)
T TIGR00881 9 LVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSD----RSNPRVFLPI-GLILCAIVNLFFGFSTSL 83 (379)
T ss_pred HhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHH----hhCCeehhHH-HHHHHHHHHHHHHHhhhH
Confidence 34455556677778999999999999999999999999999999999 9999988877 445555666666666555
Q ss_pred ccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhh-cccccccc
Q 010630 125 GWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYA-TGSFSGWF 203 (505)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~-l~~~~~~~ 203 (505)
+.+++.+++.|++.+...+...+++.|++|+++|+ +++++.+....+|..+++. ++......
T Consensus 84 ---------------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 146 (379)
T TIGR00881 84 ---------------WVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERG--TWVSFWNCSHNVGGGLLPPLVLFGIAEL 146 (379)
T ss_pred ---------------HHHHHHHHHHHhhccccCCchHHHHHHhcCHhhhe--eeEeehhccchhHHHHHHHHHHHHHHhc
Confidence 77888999999999999999999999999999999 9999999999999999983 44432211
Q ss_pred ccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCc---c-cCCCCCc-chHHHHHHHHHH
Q 010630 204 KILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFS---E-EGHEQSS-DVHEAFLWELFG 278 (505)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~---~-~~~~~~~-~~~~~~~~~~~~ 278 (505)
.+|++.|++.+++.++..++.++..||+++.+..++++++ + +++++.+ ++.+.......+
T Consensus 147 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (379)
T TIGR00881 147 ---------------YSWHWVFIVPGIIAIIVSLICFLLLRDSPQSCGLPPAEEMPNEEPDGDAEKKEEELTKKQIFLQY 211 (379)
T ss_pred ---------------CCchhHHHHHHHHHHHHHHHHheeeCCCccccccCccccCcccccccccccccccccchHHHHHH
Confidence 2899999988877777777777777776543221111110 0 0000000 001111122334
Q ss_pred HHhcccHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010630 279 TFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRK 358 (505)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~~r 358 (505)
.+++ |.++.+.+..++..........+.+.|+.+. ++.++. ..........+...++.++.+++.||
T Consensus 212 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~----------~~~~~~~~~~~~~~~~~~~~g~l~~r 278 (379)
T TIGR00881 212 VLLN--KVLWYISLGYVFVYVVRTGILDWSPLYLTQE-KGFSKE----------KASWAFTLYELGGLVGTLLAGWLSDK 278 (379)
T ss_pred HHhc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCHH----------HHHHHHHHHHHHcchhHHHHHHHHHH
Confidence 4555 7777777777776666667777778777432 222211 11233344567778889999999998
Q ss_pred hcc-hHHHH-HHH-HHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhcccc
Q 010630 359 WGA-GFIWG-ISN-ILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLG 435 (505)
Q Consensus 359 ~g~-~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 435 (505)
..+ |+... ... ....++....... +. .+.+.......+.|+...........+..|..|+
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-- 341 (379)
T TIGR00881 279 LFNGRRGPLAVFFMALIIVSLLVYWLN--------------PA-ANPLMDLICLFALGFLVYGPQMLIGVIASELAPK-- 341 (379)
T ss_pred HcCCcchHHHHHHHHHHHHHHHHHhcC--------------cc-hhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCc--
Confidence 643 33222 111 1111111111111 11 1233344444555554444444556778899998
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhc
Q 010630 436 LGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFG 468 (505)
Q Consensus 436 ~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g 468 (505)
+++|++.|+.+....+++.++|.+.|.+.|..|
T Consensus 342 ~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g 374 (379)
T TIGR00881 342 KAAGTAAGFVGFFAYLGGILAGLPLGYLADGFG 374 (379)
T ss_pred chhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhc
Confidence 999999999999999999999999999999876
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=7e-28 Score=240.60 Aligned_cols=366 Identities=14% Similarity=0.108 Sum_probs=261.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHH
Q 010630 36 VASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAV 115 (505)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~ 115 (505)
+....+...+........+|.+.+++|.+..+.+++.+.+.++..++.++.|+++| |+|||+.++. +.....++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~g~r~~~~~-~~~~~~~~~ 81 (485)
T TIGR00711 7 LMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAK----RFGTRRLFLI-STFAFTLGS 81 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHH----HhCcHHHHHH-HHHHHHHHH
Confidence 33444455566667778889999999999999999999999999999999999999 9999988877 445556666
Q ss_pred HHHhcccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhh
Q 010630 116 LLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYA 195 (505)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~ 195 (505)
+++..++++ +.+++.+++.|++.+...+...+++.|++|+++|+ +++++......+|..+|+.
T Consensus 82 ~~~~~~~~~---------------~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~--~~~~~~~~~~~~g~~~g~~ 144 (485)
T TIGR00711 82 LLCGVAPNL---------------ELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRG--RAMAIWGLTVLVAPALGPT 144 (485)
T ss_pred HHHhCcCCH---------------HHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHH--HHHHHHHHHHHHHhhhhhc
Confidence 666666665 77889999999999999999999999999999999 9999999999999999999
Q ss_pred ccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCC------------------C
Q 010630 196 TGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAP------------------F 257 (505)
Q Consensus 196 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~------------------~ 257 (505)
+++++.... +||+.|++.+.+.++..++..+..||+++.+.++.+. +
T Consensus 145 ~~~~l~~~~---------------~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~ 209 (485)
T TIGR00711 145 LGGWIIENY---------------HWRWIFLINVPIGIIVVVVAFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLSE 209 (485)
T ss_pred cHhHhccCc---------------CceehhhhhhHHHHHHHHHHHHHcCCccccccCCCcHHHHHHHHHHHHHHHHHHhh
Confidence 988743322 8999999988777777666666677654322211110 0
Q ss_pred cccCCCCCcchHHHH------------HHH--------HHHHHhcccHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHh
Q 010630 258 SEEGHEQSSDVHEAF------------LWE--------LFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIY 317 (505)
Q Consensus 258 ~~~~~~~~~~~~~~~------------~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (505)
.+++........... .++ -.+.+++ |.++...+..++..........+.+.|+. +.+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~ 286 (485)
T TIGR00711 210 GPERGWFDSNEILILSITGLVAIIAFVVWELTDDNPLVDLRLFKY--RNFTIGCVYMSLLGLGLYGSFYLLPLYLQ-QVL 286 (485)
T ss_pred CCCCCCCCchHHHHHHHHHHHHHHHHHHHHHcCCCCccCHHHHcC--CChHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhc
Confidence 000000000000000 000 0234455 56666666666666666666667777774 333
Q ss_pred CCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCC
Q 010630 318 GGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLP 397 (505)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (505)
+.++.+ ..+......+...++.++.+++.||+|+|+.+..+..+.+++..++.+.. + +
T Consensus 287 g~s~~~----------~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~----~--------~ 344 (485)
T TIGR00711 287 GYTALQ----------AGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTF----T--------P 344 (485)
T ss_pred CCCHHH----------HHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccC----C--------C
Confidence 322211 12334446677888999999999999999998888887777776655221 0 1
Q ss_pred CChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhh
Q 010630 398 PNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQL 466 (505)
Q Consensus 398 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~ 466 (505)
+ .+.+.......+.|++.+...+.......+..|+ +++|++.|+.+....+|+.+|+.+.|.+.+.
T Consensus 345 ~-~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~ 410 (485)
T TIGR00711 345 D-TPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPP--HKIARGSSLSNFTRQLGGSIGTALITTILTN 410 (485)
T ss_pred C-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH--HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1234455567778888887776666677777888 9999999999999999999999999999874
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.6e-26 Score=221.80 Aligned_cols=377 Identities=15% Similarity=0.104 Sum_probs=241.7
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCC-----CCcchhHHHHHHHHH
Q 010630 38 SVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRF-----GRRRPFIVCGAISIA 112 (505)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~-----Grr~~~~~~~~~~~~ 112 (505)
...+............+|.|+++.|+|.+++|++..+... .+.++++|+++| |+ ||||.++..+.+...
T Consensus 6 ~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~D----r~~~~~~g~rr~~l~~~~~~~~ 79 (402)
T PRK11902 6 LLGFASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMD----RYTPPLLGRRRGWLLLTQVGLA 79 (402)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHH----cccccCCCcchhHHHHHHHHHH
Confidence 3455566777788889999999999999999999776665 689999999999 66 898877776666666
Q ss_pred HHHHHHhcccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHH
Q 010630 113 VAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNIL 192 (505)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~i 192 (505)
++...+++.+.. ...+.+++..++.++..+...++..+++.|++|+++|+ ++.++...+.++|.++
T Consensus 80 l~~~~l~~~~~~------------~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~--~~~~~~~~g~~~g~i~ 145 (402)
T PRK11902 80 ASIAAMAFCPPH------------AALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERG--AGAAVKVLGYRLAMLV 145 (402)
T ss_pred HHHHHHHhcCcc------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhh--HHHHHHHHHHHHHHHH
Confidence 666665554321 12244555555667778888889999999999999999 9999999999999999
Q ss_pred HhhccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCCCCCcchHHHH
Q 010630 193 GYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAF 272 (505)
Q Consensus 193 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (505)
++.++..+.... .+||..|++.+++.++..+. .+..||++++++++ + +.+++.
T Consensus 146 g~~l~~~l~~~~--------------~gw~~~f~i~a~~~l~~~l~-~~~~~e~~~~~~~~-------~-----~~~~~~ 198 (402)
T PRK11902 146 SGGLALWLADRV--------------LGWGNTYLLMAGLMLAGALT-TLWAPEPEVPARPP-------R-----SLGEAV 198 (402)
T ss_pred HhHHHHHHHhcc--------------cCHHHHHHHHHHHHHHHHHH-HHhcCCCccccccc-------c-----hhHHHH
Confidence 988766522110 28999999988766554443 45566654321111 0 001122
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHH---HHHHHHHHH
Q 010630 273 LWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLML---NSVVLGITS 349 (505)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~ 349 (505)
.+++.+.+|+ |.++..++..++..........+.+.++.++ ++. +....+... ..++.+++.
T Consensus 199 ~~~~~~l~~~--~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~-~G~------------~~~~~g~~~~~~~~~~~i~g~ 263 (402)
T PRK11902 199 VGPLRDFFSR--RGAWALLLLIVLYKLGDAFAGSLSTTFLIRG-AGF------------SAGEVGIVNKTLGLAATIVGA 263 (402)
T ss_pred HHHHHHHHhC--cCHHHHHHHHHHHHhHHHHHHHHHHHHHHHh-cCC------------CHHHHHHHHhHHHHHHHHHHH
Confidence 3445566666 6677665555554443322222333444222 221 112233322 233467888
Q ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHH----HHhhHHHHHhhchhH
Q 010630 350 VLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFT----ILGGPLAITYSVPYA 425 (505)
Q Consensus 350 ~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~g~~~~~~~~~~~~ 425 (505)
++.+++.||+|+|+.+..+..+..+..+.+...... ++ +.+....... ..|++.+........
T Consensus 264 ~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~-----------~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 330 (402)
T PRK11902 264 LAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVT-----------PK--HLWTMALAIGIENLCGGMGTAAFVALLMA 330 (402)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc-----------CC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998877666655554443322100 11 2333333333 344445555555555
Q ss_pred hHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHhccCCC
Q 010630 426 LVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPRSS 497 (505)
Q Consensus 426 ~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (505)
++.+..|. +..+..+....+++.+++.++|.+.|..| +...|...+++.+++.++.....++.+
T Consensus 331 ~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~G~l~~~~G--~~~~f~~~~~~~~~~~~~~~~~~~~~~ 394 (402)
T PRK11902 331 LCNRSFSA------TQYALLSALASVGRVYVGPTSGYLVEAYG--WPGFYLMTVVIALPGLALLWLMRGTIG 394 (402)
T ss_pred hcCCCCcH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhC--hHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 55555554 34556666667788777789999999987 667788888777777666555444433
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-26 Score=222.68 Aligned_cols=369 Identities=12% Similarity=0.079 Sum_probs=231.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHH-HHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHH
Q 010630 36 VASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVA 114 (505)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~ 114 (505)
.....+...++.....+.++.+. +++|.|++++|++.+...+...+.+++.|.++| |+||||.++..+.+...+.
T Consensus 20 ~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~d----r~g~r~~~~~~~~~~~~~~ 95 (393)
T PRK15011 20 FLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGRSD----KRGDRKSLIVFCCLLGVLA 95 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh----cccchhHHHHHHHHHHHHH
Confidence 33345666677777788888876 789999999999987776655655555555599 9999988766555554455
Q ss_pred HHHHhcccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHh
Q 010630 115 VLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGY 194 (505)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~ 194 (505)
..+..+++++ +.+++.+.+.+...+...+...++..|..++++|..+...++.+...++|.++|+
T Consensus 96 ~~~~~~~~~~---------------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~ 160 (393)
T PRK15011 96 CTLFAWNRNY---------------FVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGP 160 (393)
T ss_pred HHHHHHhhHH---------------HHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhh
Confidence 5555555544 4444444444444455666677888887776655411345778888999999999
Q ss_pred hccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCCCCCcchHHHHHH
Q 010630 195 ATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLW 274 (505)
Q Consensus 195 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (505)
.+++.+.... +||..|++.++..++..++.++..||.++++++++ + +.+
T Consensus 161 ~i~~~l~~~~---------------gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~----------- 209 (393)
T PRK15011 161 PLAYALAMGF---------------SFTVMYLSAAVAFIVCGVMVWLFLPSMRKELPLAT---G--TLE----------- 209 (393)
T ss_pred HHHHHHHHhc---------------ChHHHHHHHHHHHHHHHHHHHhhcCccCCCCcccc---c--ccc-----------
Confidence 9988743322 99999999887777777777777787643222110 0 000
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHH
Q 010630 275 ELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEK 354 (505)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 354 (505)
+.+ ++ ++..+.........+.....+..+.+.|+.++ ++.++.. . ........+..+++.++.|+
T Consensus 210 ~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-~~~~~~~---------~-g~~~~~~~~~~i~~~~~~G~ 274 (393)
T PRK15011 210 APR---RN-RRDTLLLFVICTLMWGTNSLYIINMPLFIINE-LHLPEKL---------A-GVMMGTAAGLEIPTMLIAGY 274 (393)
T ss_pred ccc---cc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHH---------H-HHHHHHHHHHHHHHHHHHHH
Confidence 000 11 12222222333333333333444566666432 3322211 1 12222334556677899999
Q ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhccc
Q 010630 355 LCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESL 434 (505)
Q Consensus 355 l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 434 (505)
++||+++|+.+..+.....+.+......+ +.+..++...+.++..+...+....+..|..|+
T Consensus 275 l~dr~g~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~- 336 (393)
T PRK15011 275 FAKRLGKRFLMRVAAVAGVCFYAGMLMAH-----------------SPAILLGLQLLNAIYIGILGGIGMLYFQDLMPG- 336 (393)
T ss_pred HHHHhChHHHHHHHHHHHHHHHHHHHHHh-----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-
Confidence 99999999987766555544433332221 233344444445555555555555667787774
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHH
Q 010630 435 GLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAIL 491 (505)
Q Consensus 435 ~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 491 (505)
++|+++++++...++|..++|.++|.+.|..| +...+.+.+++.+++.+..+.
T Consensus 337 --~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g--~~~~~~~~~~~~~~~~~~~~~ 389 (393)
T PRK15011 337 --QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWN--YHAVFWFALVMIIATLFCLLR 389 (393)
T ss_pred --CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHh
Confidence 58999999999999999999999999999876 566677777677666655443
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-26 Score=227.39 Aligned_cols=371 Identities=13% Similarity=0.045 Sum_probs=219.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHhCCCchhHHHHH-HHh-----hhhhhhcccccceeccccCCCCCCcchhHHHH
Q 010630 34 LKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIW-LCG-----PVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCG 107 (505)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~-~~~-----~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~ 107 (505)
.......+...+.........|.+.++++.++.+.+.+. +.. .+...+++++.|+++| |+||||.++..
T Consensus 18 ~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~D----r~Grr~~l~~~- 92 (434)
T PRK15075 18 LRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYID----RVGRRKGLIVT- 92 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhh----hhchHHHHHHH-
Confidence 334445555555666677788888899998887765432 222 2333467889999999 99999988884
Q ss_pred HHHHHHHHHHHhcccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHH
Q 010630 108 AISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMA 187 (505)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 187 (505)
.....++..++.+++++... .......++++|++.|++.+...+...++++|++|+++|+ +++++.....+
T Consensus 93 ~~~~~~~~~l~~~~~~~~~~-------~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg--~~~~~~~~~~~ 163 (434)
T PRK15075 93 LSIMASGTLLIAFVPGYATI-------GLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKG--FYTSWQSASQQ 163 (434)
T ss_pred HHHHHHHHHHHHhCCcHHHH-------HHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccch--HHHHHHHHHHH
Confidence 45566666667677664100 0001124678899999999998888899999999999999 99999988888
Q ss_pred HHHHHHhhccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCCCCCcc
Q 010630 188 VGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSD 267 (505)
Q Consensus 188 ~g~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 267 (505)
+|..+++.+++.+.... .+...+ ..+||+.|++..+.. +...+.....||+++...++ .+ .
T Consensus 164 ~g~~~g~~~g~~l~~~~-~~~~~~------~~gWr~~f~~~~~~~-~~~~~~~~~~~e~~~~~~~~--------~~---~ 224 (434)
T PRK15075 164 VAVVFAALLGYLLNQWL-SPAQMA------EWGWRIPFLIGCLIV-PFIFLIRRSLEETEEFLARK--------HR---P 224 (434)
T ss_pred HHHHHHHHHHHHHHHhC-CHHHHh------ccchHHHHHHHHHHH-HHHHHHHHhcCCCHHHHHhh--------hc---c
Confidence 88888777766521100 000000 138999998754332 21111111122221000000 00 0
Q ss_pred hHHHHHHHHHHHHhcccHHHHHH-HHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHH
Q 010630 268 VHEAFLWELFGTFRYFSGTIWII-LIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLG 346 (505)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (505)
+.++..+ +..++ ++.+.. +...++..........|.|.|+.+. ++.+.. ...+......+...
T Consensus 225 ~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-~g~~~~----------~~~~~~~~~~~~~~ 288 (434)
T PRK15075 225 SMREIFR---SLAAN--WRIVLAGMLMVAMTTVSFYLITVYTPTFGKTV-LHLSAA----------DSLLVTLCVGVSNF 288 (434)
T ss_pred ccccHHH---HHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCHH----------HHHHHHHHHHHHHH
Confidence 0011111 11222 222322 2223333344555666778877432 332211 11233334567778
Q ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHH-HHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhH
Q 010630 347 ITSVLMEKLCRKWGAGFIWGISNILMALCFL-AMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYA 425 (505)
Q Consensus 347 i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 425 (505)
++.++.|+++||+|||+.+..+..+..+... ...... +.. +.........+.+++.+...+..+.
T Consensus 289 ~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~-------------~~~-~~~~~~~~~~~~~~~~g~~~~~~~~ 354 (434)
T PRK15075 289 IWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLV-------------AAP-SFARMLAVELWLSFLYGSYNGAMVV 354 (434)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH-------------cCC-chHHHHHHHHHHHHHHHHHHhhHHH
Confidence 8889999999999999988766544332221 111111 110 1222333334445566666666667
Q ss_pred hHhhhhcccccchhHHHHHHHHHHH-HHHHHHHhhhhhhHhhhcC
Q 010630 426 LVSIRTESLGLGQGLSLGVLNLAIV-IPQIVVSMGSGPWDQLFGG 469 (505)
Q Consensus 426 ~~~~~~~~~~~~~g~~~g~~~~~~~-~~~~i~~~~~g~l~~~~g~ 469 (505)
+..|..|+ +.||++.|+.+.... +++.++|.+.|++.|..|.
T Consensus 355 ~~~e~~p~--~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~ 397 (434)
T PRK15075 355 ALTEVMPA--EVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGD 397 (434)
T ss_pred HHHHHCCC--CccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCC
Confidence 88999998 899999998654444 4678899999999999863
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-26 Score=222.30 Aligned_cols=379 Identities=15% Similarity=0.107 Sum_probs=244.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHH
Q 010630 35 KVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVA 114 (505)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~ 114 (505)
.+....+...++.......++++.++++.++.+.+++.+.+.+...+.+|+.|+++| |+||||+++....+. .++
T Consensus 7 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laD----r~grr~vl~~~~~~~-~~~ 81 (393)
T PRK11195 7 AIMAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFAD----SFPKGRVMFIANGIK-LLG 81 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhh----ccCCchhhHHHHHHH-HHH
Confidence 344444555555555555666778999999999999999999999999999999999 999999888855444 333
Q ss_pred HHHHhcccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHh
Q 010630 115 VLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGY 194 (505)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~ 194 (505)
.+.+.+..+ .++.|+++|++.+...+...+++.|++|+++|+ +++++.+...++|.++||
T Consensus 82 ~~~~~~~~~------------------~~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~--~a~~~~~~~~~~~~~~Gp 141 (393)
T PRK11195 82 CLLMLFGIH------------------PLLAYGLVGIGAAAYSPAKYGILTELLPGEKLV--KANGWMEGSTIAAILLGT 141 (393)
T ss_pred HHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 333333211 146788899999999999999999999999999 999999999999999999
Q ss_pred hccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCCCCCcchHHHHHH
Q 010630 195 ATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLW 274 (505)
Q Consensus 195 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (505)
.+++++... .|+..+.+.+....+. .+..+.+||++.++++.+ ++. ....++..+
T Consensus 142 ~lgG~l~~~----------------~~~~~~~i~~~~~~~~-~~~~~~l~~~~~~~~~~~------~~~--~~~~~~~~~ 196 (393)
T PRK11195 142 VLGGALADP----------------HAEAALAVCALIYLLA-ALFNLFIPRLGARRPGQS------WNP--IALLRDFFH 196 (393)
T ss_pred HHHHHHHHH----------------HHHHHHHHHHHHHHHH-HHHHhcCCCCcccccccC------CCH--HHHHHHHHH
Confidence 999873220 3555555554433333 344456676543211110 000 000111122
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHH
Q 010630 275 ELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEK 354 (505)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 354 (505)
+.+..+++ |.++.......+.+..........+.|+ ++.++.++.. ........+++.++++++.++
T Consensus 197 ~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~lg~s~~~----------~G~~~~~~~~g~i~g~~~~~~ 263 (393)
T PRK11195 197 ACRVLWRD--KLGRFSLAGTTLFWGAGATLRFLVLAWA-PVALGITLNQ----------PAYLQAVVAIGIAVGAGAAAR 263 (393)
T ss_pred HHHHHHhC--chhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCChhH----------HHHHHHHHHHHHHHHHHHHHH
Confidence 23344455 4444433333333333333333445555 3444433221 123334466777888999999
Q ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhccc
Q 010630 355 LCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESL 434 (505)
Q Consensus 355 l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 434 (505)
+.||.++++.+..+.. .++....+...+ +.+...+...+.|++.+...+...+.+++..|+
T Consensus 264 l~~~~~~~~~~~~g~~-~~~~~~~~~~~~-----------------~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~- 324 (393)
T PRK11195 264 LVTLETVLRVLPAGIL-MGLVVLLMALQH-----------------SLLPAYPLLILIGALGGFFVVPMNALLQHRGHV- 324 (393)
T ss_pred HhcCCcccchHHHHHH-HHHHHHHHHHHh-----------------HHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcc-
Confidence 9999988887776643 333333333221 345455666678888877776677777776554
Q ss_pred ccc-hhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHhccCCCCC
Q 010630 435 GLG-QGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPRSSAQ 499 (505)
Q Consensus 435 ~~~-~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (505)
+. +|++.++.++...++..++..+.+.+ +..| ..+.+.+.+...+++..+.+.++.+++++
T Consensus 325 -~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (393)
T PRK11195 325 -LVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLG--VPVVAVIVGFGLLVALAMALLWRWHRRNQ 386 (393)
T ss_pred -cccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcC--CCHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 43 79999999999999999999999855 5555 55666665555556655555554443333
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.8e-27 Score=234.95 Aligned_cols=420 Identities=13% Similarity=0.001 Sum_probs=242.9
Q ss_pred HHHHHHHHHhhhhHHHH-----hCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHH
Q 010630 44 QFGWALQLSLLTPYVQE-----LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLI 118 (505)
Q Consensus 44 ~~~~~~~~~~~~~~~~~-----~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~ 118 (505)
.+.........+.+..+ ...+..+.+++.+...++..+++++.|+++| |+|||+.++....+ ..++.++.
T Consensus 29 g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d----~~Grr~~~~~~~~~-~~v~~~~~ 103 (502)
T TIGR00887 29 SYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLAD----KLGRKRVYGMELII-MIIATVAS 103 (502)
T ss_pred HHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhccHHHHHHHHHH-HHHHHHHH
Confidence 33333444445544432 2355667789999999999999999999999 99999988774444 44444444
Q ss_pred hcccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhhccc
Q 010630 119 GLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGS 198 (505)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l~~ 198 (505)
.++++. .....++.++++|++.|++.+...+...+++.|++|+++|+ ++.++......+|..+++.++.
T Consensus 104 ~~~~~~---------~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg--~~~~~~~~~~~~g~~~g~~~~~ 172 (502)
T TIGR00887 104 GLSPGS---------SPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRG--AMMAAVFAMQGFGILAGAIVAL 172 (502)
T ss_pred HHccCc---------ccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 444331 11122467889999999999999999999999999999999 9999999999999999988765
Q ss_pred ccccccccccccccc---------ccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCC-C-----------
Q 010630 199 FSGWFKILPFTLTSA---------CNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAP-F----------- 257 (505)
Q Consensus 199 ~~~~~~~~~~~~~~~---------~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~-~----------- 257 (505)
++.... ........ ......+||+.+.+.++..+ ...+..+++||+|+....++++ +
T Consensus 173 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~-i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~ 250 (502)
T TIGR00887 173 IVLAGF-KHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPAL-LALYFRLTIPETPRYTADVAKDVEQAASDMSAVLQ 250 (502)
T ss_pred HHHHHh-ccccccccccccccccccchhcccHHHHHHHHHHHHH-HHHHHHHhCCCCHHHHHHhCcchHHHHHHHHHHhc
Confidence 421100 00000000 00112379999977665444 4455567889998742111110 0
Q ss_pred -c-ccCCCC------CcchHHHHHHHHHHHHhcccHHHHHH---HHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCccc
Q 010630 258 -S-EEGHEQ------SSDVHEAFLWELFGTFRYFSGTIWII---LIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQN 326 (505)
Q Consensus 258 -~-~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (505)
+ +++.++ +++..+..++++++.... ++..+.. ....+...+..+....+.|.++.+ .+.+......
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~--~G~~~~~~~~ 327 (502)
T TIGR00887 251 VKIEAEPDEVEKASTAVEVPKASWSDFFTHFFK-WRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSA--IGYSPPAATN 327 (502)
T ss_pred cccccCcccccchhccccchhhhHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHccccccHHHHHH--HcCCCCccch
Confidence 0 000000 000011223333332111 1221111 111222222333444455666632 2333221100
Q ss_pred --ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHH
Q 010630 327 --YATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIA 404 (505)
Q Consensus 327 --~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (505)
+..-............+..+++.++.+++.||+|||+.++.+..+.++++.++...... . + ....
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~--~--------~---~~~~ 394 (502)
T TIGR00887 328 NAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNH--L--------S---THGF 394 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHh--c--------c---hhHH
Confidence 00000000011222344556678899999999999999888887777666655543200 0 0 1111
Q ss_pred HHHHHHHHhhHHHHHhhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhc--------CCCchHHH
Q 010630 405 ALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFG--------GGNSPAFA 476 (505)
Q Consensus 405 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g--------~~~~~~~~ 476 (505)
.........+......+..+.+..|.+|+ +.|+++.|+.+....++++++|.+.+.+.+..+ .+....|.
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~E~~p~--~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 472 (502)
T TIGR00887 395 LAIYVLAQFFANFGPNATTFIVPGEVFPT--RYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLE 472 (502)
T ss_pred HHHHHHHHHHHhcCCCchhhhhhhccCch--hHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHH
Confidence 11111111111112234567778999999 999999999999999999999999999988532 11234566
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCC
Q 010630 477 VGGISALAGGLIAILAIPRSSAQK 500 (505)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~ 500 (505)
+.+++.+++.+.. ++.||++.++
T Consensus 473 i~~~~~~~~~i~~-~~lpEt~~~~ 495 (502)
T TIGR00887 473 IFALFMFLGILFT-LLIPETKGKS 495 (502)
T ss_pred HHHHHHHHHHHHh-eEeccCCCCC
Confidence 6676777666544 5668876654
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-27 Score=234.69 Aligned_cols=366 Identities=12% Similarity=0.060 Sum_probs=243.7
Q ss_pred HHHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHHhcccccccccC
Q 010630 50 QLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLG 129 (505)
Q Consensus 50 ~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (505)
...+++.+.+++|.+..+.+++.+...+...++.|+.|+++| |+|||+.++. +.+...++.+.+.+++++
T Consensus 38 ~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~d----r~g~r~~l~~-~~~~~~~~~~~~~~~~~~----- 107 (455)
T TIGR00892 38 VTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVN----RFGCRPVVIA-GGLLASLGMILASFSSNV----- 107 (455)
T ss_pred hhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHH----HcCchHHHHh-hHHHHHHHHHHHHHhhhH-----
Confidence 345678888999999999999999999999999999999999 9999987776 444455555666565554
Q ss_pred CCCCCcchhHHHHHH-HHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhhccccccccccccc
Q 010630 130 DRGDFRPRAIAVFVF-GFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPF 208 (505)
Q Consensus 130 ~~~~~~~~~~~~~~~-~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l~~~~~~~~~~~~ 208 (505)
+.+++ .+.+.|++.+...++..+++.|+++ ++|+ ++.++.+....+|..+++.+++.+....
T Consensus 108 ----------~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~--~a~g~~~~~~~~g~~~~~~l~~~l~~~~---- 170 (455)
T TIGR00892 108 ----------IELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRP--LANGLAMAGSPVFLSTLAPLNQYLFESF---- 170 (455)
T ss_pred ----------HHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHH--HHHHHHHhcccHHHHHHHHHHHHHHHHh----
Confidence 44433 4567788888776777888899996 7889 9999999999999999988877633222
Q ss_pred cccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCC-CCccc-C-CCCC--cchHHHHHHHH--HHHHh
Q 010630 209 TLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSA-PFSEE-G-HEQS--SDVHEAFLWEL--FGTFR 281 (505)
Q Consensus 209 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~-~~~~~-~-~~~~--~~~~~~~~~~~--~~~~~ 281 (505)
+||+.|++.+++.++..+..++..++++.++..+.+ ++..+ + ..++ .....+..++. .+.++
T Consensus 171 -----------gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (455)
T TIGR00892 171 -----------GWRGSFLILGGLLLHCCVCGALMRPVGPSQRVSKSKSKEGLPPDGSTKKLSKKSTAEKINRFLDFSLFT 239 (455)
T ss_pred -----------ChHHHHHHHHHHHHHHHHHHHHhCCCCcccccccccccccCCCCCccccccccchhhhhhhhcchHHhc
Confidence 899999999877766555444443332211100000 00000 0 0000 00000111111 24555
Q ss_pred cccHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHh--
Q 010630 282 YFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKW-- 359 (505)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~~r~-- 359 (505)
+ |+++......++...+......+.+.|..+ ++.+.. .........+++.+++.++.+++.||.
T Consensus 240 ~--~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~--~g~s~~----------~~g~~~~~~~~~~~~~~~~~g~l~d~~~~ 305 (455)
T TIGR00892 240 H--RGFLVYLSGNVIMFLGFFAPIIFLVPYAKD--KGVDEY----------EAAFLLSIIGFVDIFARPSCGLIAGLKWI 305 (455)
T ss_pred C--chHHHHHHHHHHHHHHccchHHHHHHHHHH--cCCCHH----------HHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 5 777777666666666666666677777632 222211 112333445677778888999999973
Q ss_pred cchHHHHH--HHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhcccccc
Q 010630 360 GAGFIWGI--SNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLG 437 (505)
Q Consensus 360 g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 437 (505)
++|+...+ +.++.+++.++..... +.+.+++..++.|++.+...+...+++.|.+|+ ++
T Consensus 306 ~~~~~~~~~~~~~~~~l~~ll~~~~~-----------------~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~--~~ 366 (455)
T TIGR00892 306 RPHVQYLFSFALLFNGLTHLLCALAG-----------------DYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGA--QR 366 (455)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhc-----------------hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhH--HH
Confidence 33433333 2333333333332221 345566777888888888888888999999998 89
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHH
Q 010630 438 QGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGL 487 (505)
Q Consensus 438 ~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 487 (505)
+|+.+|+++....++++++|.++|.+.|..| ++...|.+.+++.+++.+
T Consensus 367 ~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g-~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 367 FSSAVGLVTIVECCAVLIGPPLAGRLVDATK-NYKYIFYASGSIVVSAGL 415 (455)
T ss_pred HhhHHhHHHHHHHHHHHccccceeeeehhcC-CcchHHHHhhHHHHHHHH
Confidence 9999999999999999999999999999874 355667666666555544
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-26 Score=225.31 Aligned_cols=385 Identities=12% Similarity=0.071 Sum_probs=250.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHH
Q 010630 29 PLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGA 108 (505)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~ 108 (505)
....+..+....+...+.......++|.+.+++|.|+.+.|++.+.+.++..+++++.|+++| |+|||+.++. +.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~d----r~G~r~~l~~-g~ 98 (438)
T PRK10133 24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMK----KLSYKAGIIT-GL 98 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCcHHHHHH-HH
Confidence 334445555555555666667777889888999999999999999999999999999999999 9999998887 44
Q ss_pred HHHHHHHHHH---hcccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHH
Q 010630 109 ISIAVAVLLI---GLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLF 185 (505)
Q Consensus 109 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 185 (505)
....++.+++ ..++++ +.+++++++.|++.+...+..++++.|+.|+++|. +.+++.+..
T Consensus 99 ~~~~~~~~l~~~~~~a~~~---------------~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~--~~~s~~~~~ 161 (438)
T PRK10133 99 FLYALGAALFWPAAEIMNY---------------TLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGH--FRLNLAQTF 161 (438)
T ss_pred HHHHHHHHHHHHHHhcCCH---------------HHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHH--HHHHHHHHH
Confidence 4455555443 334454 78889999999999999999999999987776666 678889999
Q ss_pred HHHHHHHHhhccccccccccccccc---------c---ccccccccchhHHHHHHHHHHH-HHHHHhhhccccCCCCCCC
Q 010630 186 MAVGNILGYATGSFSGWFKILPFTL---------T---SACNVDCANLKSAFFLDVIFIA-ITTCISASAAHEVPLGSHD 252 (505)
Q Consensus 186 ~~~g~~ig~~l~~~~~~~~~~~~~~---------~---~~~~~~~~~~~~~f~~~~~~~~-~~~~~~~~~~~e~~~~~~~ 252 (505)
..+|..+++.+++.+.... .|... . ........+||+.|+....+.. +..++.....||.+.+ +
T Consensus 162 ~~~G~~~g~~~g~~l~~~~-~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~--~ 238 (438)
T PRK10133 162 NSFGAIIAVVFGQSLILSN-VPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD--N 238 (438)
T ss_pred HHHHHHHHHHHHHHHHhcC-CcccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc--c
Confidence 9999999998876421000 00000 0 0000000256777764443333 3222223333332111 0
Q ss_pred CCCCCcccCCCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccch
Q 010630 253 QSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVR 332 (505)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (505)
+ + + + +..+..++.++.+++ |.++...+..++..........|.+.|+.++.++.++.
T Consensus 239 ~----~--~-~----~~~~~~~~~~~ll~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~---------- 295 (438)
T PRK10133 239 H----S--D-A----KQGSFSASLSRLARI--RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAG---------- 295 (438)
T ss_pred c----c--c-c----cccchhhhHHHHHhC--chHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHH----------
Confidence 0 0 0 0 011122334455666 66665555555555555555566666653333332222
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHH
Q 010630 333 MGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTIL 412 (505)
Q Consensus 333 ~~~~~~~~~~~~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (505)
.....+....++..+++++.+++.||+|+|+.+..+..+..+.+.+..+. +. . ..+..+.+.
T Consensus 296 ~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~--------------~~---~-~~~~~~~l~ 357 (438)
T PRK10133 296 FAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA--------------GG---H-VGLIALTLC 357 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc--------------CC---h-HHHHHHHHH
Confidence 22344555777888999999999999999999888877766555544333 21 1 234556778
Q ss_pred hhHHHHHhhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHH
Q 010630 413 GGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALA 484 (505)
Q Consensus 413 g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 484 (505)
|++.+..+|..++...+..|+ +.+++.++..+ ..++..++|.+.|.+.|..| +....|++..++.+.
T Consensus 358 glg~~~i~P~~~s~a~~~~~~---~~~~as~l~~~-~~~g~~~~~~i~G~l~~~~g-~~~~~~~v~~~~~~~ 424 (438)
T PRK10133 358 SAFMSIQYPTIFSLGIKNLGQ---DTKYGSSFIVM-TIIGGGIVTPVMGFVSDAAG-NIPTAELIPALCFAV 424 (438)
T ss_pred HHHHHHHHHHHHHHHHcccch---hhccchhHHhH-HhccchHHHHHHHHHHHhcc-chHHHHHHHHHHHHH
Confidence 999999999999999998774 46677777654 45788899999999999865 234555554444333
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-27 Score=231.38 Aligned_cols=392 Identities=12% Similarity=0.095 Sum_probs=240.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHH-hCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHH
Q 010630 32 KLLKVASVAGGIQFGWALQLSLLTPYVQE-LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAIS 110 (505)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~ 110 (505)
..+.+....+...+++....++++.++++ +|+|+.+.|++.++..+...+++|+.|+++| |+||||.++....+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~D----r~g~r~~~~~~~~~~ 86 (420)
T PRK09528 11 NYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISD----KLGLKKHLLWIISGL 86 (420)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCchHHHHHHHHHH
Confidence 34444445555556677778899988754 9999999999999999999999999999999 999999887643332
Q ss_pred HHHHHHHHhc--ccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHH
Q 010630 111 IAVAVLLIGL--SADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAV 188 (505)
Q Consensus 111 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 188 (505)
.......... .+.. .........++....+.+.....+....+..+. .++++ +.++......++
T Consensus 87 ~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g--~~~g~~~~~~~~ 152 (420)
T PRK09528 87 LVLFGPFFIYVFAPLL----------QYNILLGAIVGGIYLGFGFLAGAGAIEAYIERV--SRRSG--FEYGRARMWGSL 152 (420)
T ss_pred HHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHhhhhhccchhhhhhHHHHH--Hhhcc--ccchhhHHhhhH
Confidence 2221111111 1000 000001112222222322222223333333222 23455 677778888899
Q ss_pred HHHHHhhccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCCCCCcch
Q 010630 189 GNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDV 268 (505)
Q Consensus 189 g~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 268 (505)
|..+++.+++.+.. .+|++.|++.+++.++..++.++..+|++++++.++ ++ +++ +
T Consensus 153 g~~i~~~~~g~l~~----------------~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~----~ 208 (420)
T PRK09528 153 GWALCAFIAGILFN----------------INPQINFWLGSGSALILLVLLFFAKPDAPSTAKVAN-AL---GAN----A 208 (420)
T ss_pred HHHHHHHHHHHHHh----------------cCchHhHHHHHHHHHHHHHHHhcccccccchhhhcc-ch---hcc----c
Confidence 99999988776321 178888988876666665555544444332211110 00 000 0
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHH
Q 010630 269 HEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGIT 348 (505)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 348 (505)
++...++.++.+|+ |.++.+.+..+.............+.|+.+. ++.... +.........+..+...++
T Consensus 209 ~~~~~~~~~~~l~~--~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-------~~~~~g~~~~~~~~~~~~~ 278 (420)
T PRK09528 209 SAVSLKDALALLKL--PKFWFLVLYVIGVACFYDVFDQQFPNFFASF-FATPEQ-------GTRVFGYLNSFQVFLEALI 278 (420)
T ss_pred ccccHHHHHHHccC--CCeEeehHHHHHHHHHHHHHHHHHHHHHHHH-HhccCc-------chHHHHHHHHHHHHHHHHH
Confidence 11223455566666 6666554444333333333333455555432 211000 1011112233345666788
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHh
Q 010630 349 SVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVS 428 (505)
Q Consensus 349 ~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 428 (505)
.++.|++.||+|+|+.+..+.++.+++.++..+.. +.+.++....+.+++.+........++.
T Consensus 279 ~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~-----------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~ 341 (420)
T PRK09528 279 MFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFAT-----------------GPLEVSILKLLHAFEVPFLLVGVFKYIT 341 (420)
T ss_pred HHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcc-----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999998888888887777766552 3455666677777777777666778888
Q ss_pred hhhcccccchhHHHHH-HHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHhccCC
Q 010630 429 IRTESLGLGQGLSLGV-LNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPRS 496 (505)
Q Consensus 429 ~~~~~~~~~~g~~~g~-~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (505)
+..|+ +.+++..+. +++...+|.+++|.+.|++.|..| +...|...+++.++..++.....+++
T Consensus 342 ~~~~~--~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G--~~~~f~~~~~~~~i~~~~~~~~~~~~ 406 (420)
T PRK09528 342 LNFDV--RLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIG--FQGTYLILGGIVLLFTLISVFTLSGD 406 (420)
T ss_pred HHcCc--cceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhC--chHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 88888 888887765 678889999999999999999876 67788877777766665655555443
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.96 E-value=5e-28 Score=231.35 Aligned_cols=346 Identities=22% Similarity=0.313 Sum_probs=241.3
Q ss_pred HHHHHHHHHHHHHhhh-hHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHH
Q 010630 40 AGGIQFGWALQLSLLT-PYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLI 118 (505)
Q Consensus 40 ~~~~~~~~~~~~~~~~-~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~ 118 (505)
.+...+......+.+| .+.+++|.|..+.+++.++..+...+++++.|+++| |+|||+.++. +.+...++....
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~g~r~~l~~-~~~~~~~~~~~~ 79 (352)
T PF07690_consen 5 FFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSD----RFGRRRVLII-GLLLFALGSLLL 79 (352)
T ss_dssp HHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHH----HS-HHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HcCCeeeEee-hhhhhhhHHHHh
Confidence 3445556666777788 667899999999999999999999999999999999 9999996666 455555554443
Q ss_pred hcccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhhccc
Q 010630 119 GLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGS 198 (505)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l~~ 198 (505)
.++++. +.+++.+++.|++.+...+...+++.|++|+++|+ +++++.....++|..+++.+++
T Consensus 80 ~~~~~~---------------~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~g~~~g~~l~~ 142 (352)
T PF07690_consen 80 AFASNF---------------WLLLIARFLLGIGSGFFSPASNALIADWFPPEERG--RAFGILSAGFSLGSILGPLLGG 142 (352)
T ss_dssp HHHCCH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhH---------------HHHhhhccccccccccccccccccccccchhhhhh--hccccccchhhhhhhcccchhh
Confidence 344444 67888999999999999999999999999999999 9999999999999999999988
Q ss_pred cccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCCCCCcchHHHHHHH-HH
Q 010630 199 FSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWE-LF 277 (505)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 277 (505)
.+.... +|++.|++.+++.++..++...+.++++++++++++.+++ ++.+...++ .+
T Consensus 143 ~l~~~~---------------~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~ 200 (352)
T PF07690_consen 143 FLISYF---------------GWRWAFLISAILSLIAAILFILFLPEPPPPRERESPKESE-------SKKPKPLKPGFK 200 (352)
T ss_dssp HCCCHC---------------HHCCHHHHHHHHHHHHHHHHHCCC---STTTT--SSTTTT---------HHHCCCH-CT
T ss_pred hhhhcc---------------ccccccccccchhhhhhhhHhhhhhhcccccccccccccc-------cccccccccccc
Confidence 744322 8999999999888887776555555554443332211110 001111112 22
Q ss_pred HHHhcccHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010630 278 GTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCR 357 (505)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~~ 357 (505)
...++ +.+|......+...........+.+.|+.+. ++.+ +............+...++.++.+++.|
T Consensus 201 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 268 (352)
T PF07690_consen 201 SLFKN--PVLWILLIAFFLFFFVFSGFSFFLPLYLQEV-LGFS---------GPSQAGLLFSIFGIVGIIGSLLAGRLSD 268 (352)
T ss_dssp HHHHH--HCCHHHHHHHHHHHHHHHHHHHHHHHHCCHH-HHCC---------THHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccc--chhhhhhhhhhHHHHHHHHhhcccchhhhhc-cCCC---------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22233 4444333444444445555666677764332 2222 0111122244456777778899999999
Q ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhcccccc
Q 010630 358 KWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLG 437 (505)
Q Consensus 358 r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 437 (505)
|+++|+..........+....+...... .+....+....+.|++.+...+...+++.+..|+ ++
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~ 332 (352)
T PF07690_consen 269 RFGRRRRLLIAILLLILGALGLLLLPFS--------------SSPVWLIIALFLIGFGFGIVFPILFSLIQELVPP--EY 332 (352)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHCCSHHH--------------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHT--CH
T ss_pred HcCcHHHHHHHHHHHHHHHHHHHHHHHh--------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH--HH
Confidence 9998877776666555555544433200 0345556677788999998899999999999999 99
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 010630 438 QGLSLGVLNLAIVIPQIVVS 457 (505)
Q Consensus 438 ~g~~~g~~~~~~~~~~~i~~ 457 (505)
+|++.|+.+...+++..++|
T Consensus 333 ~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 333 RGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCC
Confidence 99999999999999999987
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-27 Score=214.48 Aligned_cols=389 Identities=14% Similarity=0.125 Sum_probs=282.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHH
Q 010630 30 LRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAI 109 (505)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~ 109 (505)
++.++.-..........|.+..+..+.+.+++|+|+.|.+++.++..+.+++..++.|.+.| |+|.|+..++. .+
T Consensus 13 ~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~d----rfGgR~~~~~s-~~ 87 (417)
T COG2223 13 RRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTD----RFGGRKWTILS-ML 87 (417)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhc----ccCchHHHHHH-HH
Confidence 34444333332333346666677777777999999999999999999999999999999999 99999888874 44
Q ss_pred HHHHHHHHHhcccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHH
Q 010630 110 SIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVG 189 (505)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 189 (505)
..++-.+...++.+. ...+.+++...+.|++.+ ......+++++++|++++| .++|+.. ..|+|
T Consensus 88 l~~IP~~~~~~a~~~------------~~~~~ll~~gll~G~~Ga-sFav~m~~~s~~fP~~~qG--~AlGI~g-~GN~G 151 (417)
T COG2223 88 LLLIPCLGLAFAVTY------------PSTWQLLVIGLLLGLAGA-SFAVGMPNASFFFPKEKQG--LALGIAG-AGNLG 151 (417)
T ss_pred HHHHHHHHHHHHccC------------CchHHHHHHHHHHhcccc-eehcccccccccCChhhhh--HHHHHhc-ccccc
Confidence 445555555454432 112677777777777654 4567789999999999999 9999998 88999
Q ss_pred HHHHhhccccccccccccccccccccccccc---hhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCCCCCc
Q 010630 190 NILGYATGSFSGWFKILPFTLTSACNVDCAN---LKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSS 266 (505)
Q Consensus 190 ~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 266 (505)
..+...+++.+.... + |+....+..+..++..+..++..+|.|+.+...++
T Consensus 152 ~av~q~~~P~v~~~~---------------g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~----------- 205 (417)
T COG2223 152 VAVAQLVAPLVAVAF---------------GFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKP----------- 205 (417)
T ss_pred HHHHHHHHHHHHHHH---------------hhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccc-----------
Confidence 888877766532211 4 88888888888888888888888887764222200
Q ss_pred chHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHH
Q 010630 267 DVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLG 346 (505)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (505)
..+ .+++...++ ++.|.+++.++..+-++..+..+++.|+. +.|+.++... +.+ .....+.+.
T Consensus 206 --~~~--~~~~~v~~~--~~~W~lsllY~~tFG~Fvgfs~~l~~~~~-~~fg~~~~~A---------g~~-a~~f~~~g~ 268 (417)
T COG2223 206 --QLP--AQLKAVFSN--KDTWLLSLLYFATFGGFVGFSAYLPMYLV-TQFGLSPVTA---------GLI-AFLFPLIGA 268 (417)
T ss_pred --cch--hHHHHHhcC--cchHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCChhhH---------HHH-HHHHHHHHH
Confidence 111 345556667 89999999999999899999999999985 5566555442 112 223456667
Q ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHh
Q 010630 347 ITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYAL 426 (505)
Q Consensus 347 i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 426 (505)
+..+++|+++||+|.+|.+......++++............+ ..+.+..+..+...++..+......+.+
T Consensus 269 l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~----------~~~~~~~~~~~l~l~~~~G~GnGsvfk~ 338 (417)
T COG2223 269 LARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGH----------GGSFVVFVAVFLALFVFAGLGNGSVFKM 338 (417)
T ss_pred HHHhccchhhhhccchhHHHHHHHHHHHHHHHHHcccccccc----------CcchHHHHHHHHHHHHHhccCcchheee
Confidence 888999999999999999988888877777766554211000 1134445555555555666666666678
Q ss_pred HhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHhccCC
Q 010630 427 VSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPRS 496 (505)
Q Consensus 427 ~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (505)
+..++| ++.|.+.|+......+|++.-|...|...+.+| .+...|++...+.+++.++......++
T Consensus 339 Ip~if~---~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg-~~~~~f~~~~~~~~~a~v~~~~~y~r~ 404 (417)
T COG2223 339 IPVIFP---KETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTG-SYTGAFMLLLAFYLVALVLTWALYARR 404 (417)
T ss_pred chHHHH---hhhhHHHHHHHHhccccccchhHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 888887 689999999999999999999999999999986 567778888888888877766655443
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-25 Score=218.64 Aligned_cols=388 Identities=11% Similarity=0.062 Sum_probs=246.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHH-HHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHH
Q 010630 35 KVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAV 113 (505)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~ 113 (505)
.++...+.....+....+.++.++ +++|++..++|++.++..++..++++++|.++| |+||||..+..+.+...+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~d----r~g~~r~~~~~~~~~~~~ 81 (418)
T TIGR00889 6 KLKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIAD----KWLSAQKVYAVCHFAGAL 81 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhcccHHHHHHHHHHHHH
Confidence 345556666677888888888877 669999999999999999999999999999999 987655444445554544
Q ss_pred HHHHHhcccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHh----h----hcccccccchhhHhHHHHHH
Q 010630 114 AVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALL----A----DLTGKDHRRTRVANAYFSLF 185 (505)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~----~----~~~~~~~r~~~~~~~~~~~~ 185 (505)
......+.+++ +.+.+.+.+.+++.+...+...++. . |...+..|. |..|
T Consensus 82 ~~~~~~~~~~~---------------~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~--r~~G----- 139 (418)
T TIGR00889 82 LLFFAAQVTTP---------------AGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPI--RVMG----- 139 (418)
T ss_pred HHHHHHHhcCH---------------HHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCe--eeeh-----
Confidence 55444454443 4555666666666655555544443 2 333334455 5544
Q ss_pred HHHHHHHHhhccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCCCCC
Q 010630 186 MAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQS 265 (505)
Q Consensus 186 ~~~g~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 265 (505)
.+|.++|+.+++.+... ..|. .|++.+++.++..++ .+.+||+++.++++ +.+
T Consensus 140 -~lG~~ig~~l~g~l~~~---------------~~~~-~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~-------~~~-- 192 (418)
T TIGR00889 140 -TIGFIAAMWAVSLLDIE---------------LSNI-QLYITAGSSALLGVF-ALTLPDIPVAKSTA-------KMS-- 192 (418)
T ss_pred -hHHHHHHHHHHHHhccc---------------chhH-HHHHHHHHHHHHHHH-HhcCCCCCCCcccc-------ccC--
Confidence 35666666666542110 1233 355555555544443 45667754321111 000
Q ss_pred cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHH
Q 010630 266 SDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVL 345 (505)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (505)
.++....+..+.+|+ |+++.+.+..++..........+.+.++.+ .+.++....++ +.........+..+..
T Consensus 193 --~~~~~~~~~~~~~k~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~--~~~~~g~~~~~~~i~~ 264 (418)
T TIGR00889 193 --IKVMLGLDAFILFKN--KRMAIFFFFSMLLGAPLQITNIFGNGFLHE--FGRNPEFADSF--VVKNASIWMSLSQFSE 264 (418)
T ss_pred --HHHHhhhhHHHHhcC--CCeeeHHHHHHHHHhHHHHHHHhHHHHHHH--hcccccccchh--hhhhHHHHHHHHHHHH
Confidence 011111123345566 666666666666555444455566666632 22222110011 1111223334456677
Q ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhH
Q 010630 346 GITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYA 425 (505)
Q Consensus 346 ~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 425 (505)
+++.+..+++.||+|+|+.+..+.++.+++..++.... +...+.+..++..++.|++.+...+....
T Consensus 265 i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~-------------~~~~~~~~l~l~~~l~g~~~~~~~~~~~~ 331 (418)
T TIGR00889 265 IFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGD-------------PEYFGYALLFLSMIVYGCAFDFFNISGSV 331 (418)
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcC-------------cchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78889999999999999999999888877766555431 11112344556677888888887777788
Q ss_pred hHhhhhcccccchhHHHHHHH-HHHHHHHHHHHhhhhhhHhhhcC----CCchHHHHHHHHHHHHHHHHHHhccCCCC
Q 010630 426 LVSIRTESLGLGQGLSLGVLN-LAIVIPQIVVSMGSGPWDQLFGG----GNSPAFAVGGISALAGGLIAILAIPRSSA 498 (505)
Q Consensus 426 ~~~~~~~~~~~~~g~~~g~~~-~~~~~~~~i~~~~~g~l~~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (505)
++.|..|+ +.+|+++|+.+ ....+|..+||.++|.+.|+.|+ ++...|.+.+++.++++++.+++.+++++
T Consensus 332 ~i~~~~p~--~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~ 407 (418)
T TIGR00889 332 FVEKEVPV--HIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHN 407 (418)
T ss_pred HHHHHCCH--HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 89999999 99999999997 56789999999999999999762 35567888887877777777777776543
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-25 Score=217.52 Aligned_cols=355 Identities=14% Similarity=0.059 Sum_probs=235.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHH
Q 010630 29 PLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGA 108 (505)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~ 108 (505)
+++.++..........+......+.+|.+.+++|.|+.+.+++.+++.++..+++++.|+++| |+|||+.++. +.
T Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~D----r~grr~~~~~-~~ 80 (394)
T PRK11652 6 NVNLLFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSD----RVGRRPVILV-GM 80 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHH----hcCChHHHHH-HH
Confidence 444455444444444456666677788889999999999999999999999999999999999 9999988777 44
Q ss_pred HHHHHHHHHHhcccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHH
Q 010630 109 ISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAV 188 (505)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 188 (505)
....++.+.....+++ +.+++.+++.|++.+...+....+..|..++++++ ++++..+.+..+
T Consensus 81 ~~~~~~~~~~~~~~~~---------------~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 143 (394)
T PRK11652 81 SIFILGTLVALFAHSL---------------TVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLR--HANSLLNMGILV 143 (394)
T ss_pred HHHHHHHHHHHHHccH---------------HHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHH--HHHHHHHHHHHH
Confidence 4455555555555554 67788899999888877777788899999988898 899999999999
Q ss_pred HHHHHhhccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCCCCCcch
Q 010630 189 GNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDV 268 (505)
Q Consensus 189 g~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 268 (505)
+..+++.+++.+.... +||+.|++.++...+..++..+..||+++.+++
T Consensus 144 ~~~~g~~i~~~l~~~~---------------g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 192 (394)
T PRK11652 144 SPLLAPLIGGLLTTLF---------------GWRACYLFLLLLGAGVTFSMARWMPETRPADAR---------------- 192 (394)
T ss_pred HHHHHHHHHHHHHhcc---------------ChHHHHHHHHHHHHHHHHHHHHhCCccCccccc----------------
Confidence 9999998887633222 899999988776666655555666765432111
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHH
Q 010630 269 HEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGIT 348 (505)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 348 (505)
+++..+++++.+++ |+++...+..+....+...+..+.+.++.+ .++.++. ...+......++.+++
T Consensus 193 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~----------~~~~~~~~~~~~~~~g 259 (394)
T PRK11652 193 RTRVLASYRTLLSN--RRFNCYLLMLIGTLAGIAVFEACSGVLMGA-VLGLSSM----------TVSILFILPIPAAFFG 259 (394)
T ss_pred hhHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHhChHHHHH-HcCCCHH----------HHHHHHHHHHHHHHHH
Confidence 01122344455565 666655544444443444444445555532 2332211 1112222345556677
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHh
Q 010630 349 SVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVS 428 (505)
Q Consensus 349 ~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 428 (505)
+.+.+++.||.+++.... .....++.+...... . ....+.+.......+.+++.+...+...+...
T Consensus 260 ~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~-~-----------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 325 (394)
T PRK11652 260 AWFAGRPNKRFSTLMWQS--VICCLLAGLLMWIPG-W-----------FGVMNVWTLLVPAALFFFGAGMLFPLATSGAM 325 (394)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH-H-----------hccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888888887333222 222222222211110 0 00002345566667788888888888888888
Q ss_pred hhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhh
Q 010630 429 IRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQL 466 (505)
Q Consensus 429 ~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~ 466 (505)
+..| +++|+..++.+....+|..+++.++|.+.+.
T Consensus 326 ~~~~---~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~ 360 (394)
T PRK11652 326 EPFP---YLAGTAGALLGGLQNIGSGLAALLSAMLPQT 360 (394)
T ss_pred hhcc---ccchHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 8776 6789999999999999999999988877544
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.4e-26 Score=220.80 Aligned_cols=372 Identities=21% Similarity=0.237 Sum_probs=266.8
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHH
Q 010630 38 SVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLL 117 (505)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~ 117 (505)
......+++..+....++.++.++.-|+..++++..+..+...+.+++.|.++| |+.|||.++..-.+..++...+
T Consensus 17 ~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laD----r~drrrili~~~~~~~~~~~~L 92 (524)
T PF05977_consen 17 IAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALAD----RFDRRRILILSQLLRALVALLL 92 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhh----cccchHHHHHHHHHHHHHHHHH
Confidence 344555667777776777777788889999999999999999999999999999 9999999988665544443333
Q ss_pred HhcccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhhcc
Q 010630 118 IGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATG 197 (505)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l~ 197 (505)
..+.. ......+.+++..++.|++.+...|..++.++|++|+++.. .++++.++..++..++||.++
T Consensus 93 ~~l~~-----------~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~--~A~al~s~~~niar~iGPalg 159 (524)
T PF05977_consen 93 AVLAF-----------FGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLP--AANALNSISFNIARIIGPALG 159 (524)
T ss_pred HHHHH-----------hCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHH--HHHHHHHHHHHHHHhccchHH
Confidence 22211 11123366777788889999999999999999999999999 999999999999999999999
Q ss_pred ccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCCCCCcchHHHHHHHHH
Q 010630 198 SFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELF 277 (505)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (505)
|.+.... |..+.|.+.++..++.... +...++++.+.+.+ +++..++++
T Consensus 160 G~Lva~~---------------G~~~~f~inalsfl~~i~~-l~~~~~~~~~~~~~---------------~e~~~~~l~ 208 (524)
T PF05977_consen 160 GILVAFF---------------GAAAAFLINALSFLISILA-LLRWKPPPPPSSLP---------------RERFFSALR 208 (524)
T ss_pred HHHHHHH---------------HHHHHHHHHHHHHHHHHHH-HHHccccccccccc---------------hhhhhhhHH
Confidence 9843322 6677888877655544333 33333322111111 112233333
Q ss_pred HHHhcc--cHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHH--HHHHHHHHHHHHHHH
Q 010630 278 GTFRYF--SGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGL--MLNSVVLGITSVLME 353 (505)
Q Consensus 278 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~g 353 (505)
+.+|.. +|.++..+...++..+....+....|.+. ++.++.++ ..+++ ...+++.++++++.+
T Consensus 209 ~G~ryv~~~~~l~~~l~~~~~~~l~~~a~~aLlPl~a-~~~l~~~a------------~~yGll~a~~gvGai~Gal~~~ 275 (524)
T PF05977_consen 209 EGLRYVRSSPPLRSVLLRSFLFNLFASAVWALLPLFA-RDVLGGGA------------SGYGLLLAAFGVGAILGALLLP 275 (524)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHhhhHHHHhhhHHH-HHHhCCcH------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 333322 25555555444444444444444455554 33333222 22333 346788888999999
Q ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhcc
Q 010630 354 KLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTES 433 (505)
Q Consensus 354 ~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 433 (505)
++.+|+++++++..+.++.+++++.+.+.. +.+...+..++.|+++........+.+++..|+
T Consensus 276 ~l~~~~~~~~lv~~~~~~~a~~~~~lal~~-----------------~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~ 338 (524)
T PF05977_consen 276 RLRRRLSSRRLVLLASLLFALALLLLALSP-----------------SFWLALIALFLAGAAWIIANSSLNTLVQLSVPD 338 (524)
T ss_pred HhhcccCcchhhHHHHHHHHHHHHHHhcch-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 999999998988888888888877777763 567777788889999998888888999999999
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHH
Q 010630 434 LGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAIL 491 (505)
Q Consensus 434 ~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 491 (505)
+.+|++++++++....+..+|..+.|.+.+..| ....+.++++..+++.++...
T Consensus 339 --~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g--~~~al~~a~~~lll~~~~~~~ 392 (524)
T PF05977_consen 339 --WVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFG--VRTALLIAGAALLLSALIALR 392 (524)
T ss_pred --HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999987 556777777666666655543
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.9e-26 Score=218.17 Aligned_cols=339 Identities=15% Similarity=0.146 Sum_probs=225.5
Q ss_pred HHHHHHHHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHHhccccc
Q 010630 45 FGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADI 124 (505)
Q Consensus 45 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~ 124 (505)
++.....+.+|.+.+++|.|+.+.+++.++..++..+++++.|+++| |+|||+.+.. +.+...++...+.+.++.
T Consensus 5 ~~~~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~g~~~~~~~-~~~~~~i~~~~~~~~~~~ 79 (377)
T PRK11102 5 LAIDMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMAD----SFGRKPVILG-GTLVFALAAVACALAQTI 79 (377)
T ss_pred hHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHh----hcCChHHHHH-HHHHHHHHHHHHHHHccH
Confidence 34456668889999999999999999999999999999999999999 9999987766 555555555555555554
Q ss_pred ccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhhccccccccc
Q 010630 125 GWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFK 204 (505)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l~~~~~~~~ 204 (505)
+.+.+.+++.|++.+...+...+++.|++|+++|+ +++++......+|..+++.+++.+....
T Consensus 80 ---------------~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 142 (377)
T PRK11102 80 ---------------DQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFS--RMMSFVTLVMTIAPLLAPIIGGWLLVWF 142 (377)
T ss_pred ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 67778888999999988889999999999999999 9999999999999999998877633222
Q ss_pred cccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCCCCCcchHHHHHHHHHHHHhccc
Q 010630 205 ILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFS 284 (505)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (505)
+|++.|++.+++..+..++..+..||++++++++ + .+.++..++.++.+++
T Consensus 143 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-----~~~~~~~~~~~~~~~~-- 193 (377)
T PRK11102 143 ---------------SWHAIFWVLALAAILAAALVFFFIPETLPKERRQ-------P-----FHLRTTIRNFASLFRH-- 193 (377)
T ss_pred ---------------ChHHHHHHHHHHHHHHHHHHHHhCCccCcccccC-------C-----CChHHHHHHHHHHHcC--
Confidence 8999999888777777666666777754321111 0 0111223344556666
Q ss_pred HHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Q 010630 285 GTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFI 364 (505)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~~r~g~~~~ 364 (505)
|.++..++...+...+...+..+.+.++.+ .++.++. ..........+...++.++.+++.||+|+|+.
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~----------~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~ 262 (377)
T PRK11102 194 KRVLGYMLASGFSFAGMFSFLTAGPFVYIE-LNGVSPQ----------NFGYYFALNIVFLFVMTIINSRFVRRVGALNM 262 (377)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCHHHHHH-HhCCCHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHH
Confidence 666665555555555555555555555533 2222211 11233344667778889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhcccccchhHHHHH
Q 010630 365 WGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGV 444 (505)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 444 (505)
+..+..+..+..+........ +. ..+...+...+.+.+.+.........+.|..| +.+|++.++
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~-----------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~g~~~~~ 326 (377)
T PRK11102 263 LRFGLWIQFIMGIWLVVSALL-----------DL--GFWALVVGVAAFVGCVSMISSNAMAVILDEFP---HMAGTASSL 326 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----------hh--hHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc---ccchHHHHH
Confidence 888776544433322222100 00 12333333333333344434344455555544 678888888
Q ss_pred HHHHH-HHHHHHHHhhhh
Q 010630 445 LNLAI-VIPQIVVSMGSG 461 (505)
Q Consensus 445 ~~~~~-~~~~~i~~~~~g 461 (505)
.+... .++..+++.+++
T Consensus 327 ~~~~~~~~g~~~g~~~~~ 344 (377)
T PRK11102 327 AGTLRFGIGAIVGALLSL 344 (377)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 76654 355666665543
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-26 Score=232.35 Aligned_cols=381 Identities=13% Similarity=0.089 Sum_probs=232.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHH
Q 010630 31 RKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAIS 110 (505)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~ 110 (505)
+.+..+....+...+........+|.+.+++|.|..+.+++.+...++..++.++.|+++| |+|||+.++. +.+.
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~g~r~~~~~-~~~~ 94 (496)
T PRK03893 20 KAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGD----RYGRRLAMVI-SIVL 94 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCcHHHHHH-HHHH
Confidence 3344444555555566666677788888999999999999999999999999999999999 9999987776 4444
Q ss_pred HHHHHHHHhcccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHH
Q 010630 111 IAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGN 190 (505)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~ 190 (505)
..++.+...+.+++ +.+++.+++.|++.+..++...+++.|.+|+++|+ +++++.....++|.
T Consensus 95 ~~~~~~~~~~~~~~---------------~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~--~~~~~~~~~~~~g~ 157 (496)
T PRK03893 95 FSVGTLACGFAPGY---------------WTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRN--KASGFLISGFSIGA 157 (496)
T ss_pred HHHHHHHHHHHhHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH--HHHHHHHHHHHHHH
Confidence 55555556565554 77788899999999999999999999999999999 99999999999999
Q ss_pred HHHhhccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCCCC-CcchH
Q 010630 191 ILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQ-SSDVH 269 (505)
Q Consensus 191 ~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~-~~~~~ 269 (505)
.+++.+.+.+... .+||+.|.+..+.. +..++.....||+++.+++++++++.++..+ ....+
T Consensus 158 ~~~~~~~~~l~~~---------------~~w~~~f~~~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (496)
T PRK03893 158 VVAAQVYSLVVPV---------------WGWRALFFIGILPI-IFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGE 221 (496)
T ss_pred HHHHHHHHHHhcc---------------CCHHHHHHHHHHHH-HHHHHHHHhCCCchhhhhhccccccchhHHHHHhcch
Confidence 9999888763322 28999988754333 3233333344554322111110000000000 00000
Q ss_pred HHHHH---H------HHHHHhcc----------------------------cHH-HHHHHHHHHHHHHhhHhHHhhhHHH
Q 010630 270 EAFLW---E------LFGTFRYF----------------------------SGT-IWIILIVTALTWLGWFPFLLFDTDW 311 (505)
Q Consensus 270 ~~~~~---~------~~~~~~~~----------------------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (505)
+.... . ....+... +.. ........+...........+.+.|
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~ 301 (496)
T PRK03893 222 HRIINILLTLAAAAALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTY 301 (496)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 00000 0 00000000 000 0000000000000011223445666
Q ss_pred HHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 010630 312 MGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDY 391 (505)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (505)
+.++ ++.+. ...........++.+++.++.+++.||+|+|+.+..+..+..+..+......
T Consensus 302 l~~~-~g~~~----------~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~-------- 362 (496)
T PRK03893 302 LKTD-LGYDP----------HTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIG-------- 362 (496)
T ss_pred HHhh-cCCCH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--------
Confidence 5322 22111 1122333446777888999999999999999988877666555444332221
Q ss_pred cCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCC
Q 010630 392 RGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGN 471 (505)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~ 471 (505)
. ...+.......+.+.......+...+++++..|+ +++|+++|+.+....+|..++|.+.|.+.|..| +
T Consensus 363 ------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g--~ 431 (496)
T PRK03893 363 ------G-ANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDT--EQRAAGLGFTYNVGALGGALAPILGALIAQRLD--L 431 (496)
T ss_pred ------c-cHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCH--HHhhcccchhhhhhhHHHHHHHHHHHHHhccCC--h
Confidence 1 0222222222222222222234555788899998 899999999999999999999999999999876 4
Q ss_pred chHHHHHH
Q 010630 472 SPAFAVGG 479 (505)
Q Consensus 472 ~~~~~~~~ 479 (505)
...+...+
T Consensus 432 ~~~~~~~~ 439 (496)
T PRK03893 432 GTALASLS 439 (496)
T ss_pred HHHHHHHH
Confidence 44444433
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-26 Score=218.79 Aligned_cols=344 Identities=19% Similarity=0.201 Sum_probs=269.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHH
Q 010630 37 ASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVL 116 (505)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~ 116 (505)
....+...+......+..|.+.++.|.++.+.+++.+...+...+++++.|+++| |+|||+.++. +.....++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d----~~g~r~~~~~-~~~~~~~~~~ 79 (352)
T cd06174 5 FLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSD----RFGRRRVLLL-GLLLFALGSL 79 (352)
T ss_pred HHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHH----HhCCchhhHH-HHHHHHHHHH
Confidence 3344555567777788889999999999999999999999999999999999999 9999997766 5555556665
Q ss_pred HHhcccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhhc
Q 010630 117 LIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYAT 196 (505)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l 196 (505)
.....++. +.+.+.+.+.|++.+...+...+++.|++|+++|+ +.+++.....++|..+++.+
T Consensus 80 ~~~~~~~~---------------~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~ 142 (352)
T cd06174 80 LLAFASSL---------------WLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERG--RALGLFSAGFGLGALLGPLL 142 (352)
T ss_pred HHHHhccH---------------HHHHHHHHHHHcccccccHhHHHHHHHhCCccchh--hhhhHHHHHHHHHHHHHHHH
Confidence 55555554 77888899999999999999999999999999999 99999999999999999998
Q ss_pred cccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCCCCCcchHHHHHHHH
Q 010630 197 GSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWEL 276 (505)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (505)
++.+.... +|++.+.+.+++.++..+...+. +
T Consensus 143 ~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~-~-------------------------------- 174 (352)
T cd06174 143 GGLLAESL---------------GWRWLFLILAILGLLLALLLLFL-L-------------------------------- 174 (352)
T ss_pred HHHHHHHh---------------hHHHHHHHHHHHHHHHHHHHHHH-H--------------------------------
Confidence 87733222 69999988887766665554332 2
Q ss_pred HHHHhcccHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 010630 277 FGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLC 356 (505)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~ 356 (505)
|.++......++..........+.+.+..+. ++.+. ...........+...++.++.+++.
T Consensus 175 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----------~~~~~~~~~~~~~~~i~~~~~~~~~ 235 (352)
T cd06174 175 --------RLLLLLALAFFLLSFGYYGLLTYLPLYLQEV-LGLSA----------AEAGLLLSLFGLGGILGALLGGLLS 235 (352)
T ss_pred --------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh-cCCCH----------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2344444555555566666666777776432 22111 1112334446777888999999999
Q ss_pred HHhcchH-HHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhcccc
Q 010630 357 RKWGAGF-IWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLG 435 (505)
Q Consensus 357 ~r~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 435 (505)
||+++|+ .+..+..+..++.......+ +.+...+...+.|++.+...+...++..|..|+
T Consensus 236 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-- 296 (352)
T cd06174 236 DRLGRRRLLLLIGLLLAALGLLLLALAP-----------------SLALLLVALLLLGFGLGFAFPALLTLASELAPP-- 296 (352)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHhc-----------------cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCH--
Confidence 9999999 88888888888887776653 356677788889999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHH
Q 010630 436 LGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAI 490 (505)
Q Consensus 436 ~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 490 (505)
+++++.+|+.+....+++.++|.+.|.+.+..+ +...+.+.+++.+++.+..+
T Consensus 297 ~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~--~~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 297 EARGTASGLFNTFGSLGGALGPLLAGLLLDTGG--YGGVFLILAALALLAALLLL 349 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC--cchHHHHHHHHHHHHHHHhe
Confidence 999999999999999999999999999998755 67778887777777765543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=9e-26 Score=222.19 Aligned_cols=376 Identities=15% Similarity=0.126 Sum_probs=242.3
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhH
Q 010630 26 AKVPLRKLLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFI 104 (505)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~ 104 (505)
++.++++.+.++...++..+.+....++++.|. +.+|+++.++|.+.++..+.+++.+|+.|+++||+++|+||||+++
T Consensus 3 ~~~~~~~~~~yg~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~ 82 (448)
T PRK09848 3 QQLSWRTIVGYSLGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFL 82 (448)
T ss_pred CcccHHHHHhhccchHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHH
Confidence 356677888888877777777777777777776 5579999999999999999999999999999999999999999997
Q ss_pred HHHHHHHHHHHHHHhcccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhccccc-ccchhhHhHHHH
Q 010630 105 VCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKD-HRRTRVANAYFS 183 (505)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~-~r~~~~~~~~~~ 183 (505)
..+.+...+...+....+.. .......++.++...+.+++.+...++..++..|+.++. +|. +..++..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~--~~~~~r~ 152 (448)
T PRK09848 83 LFGTAPLMIFSVLVFWVPTD--------WSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRA--RLGAARG 152 (448)
T ss_pred HHHHHHHHHHHHHHHhCcCC--------CCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHH--HHHHHHH
Confidence 65555444333333222211 111122344455556778888889999999988888764 566 6666665
Q ss_pred HHHHH-----HHHHHhhccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCc
Q 010630 184 LFMAV-----GNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFS 258 (505)
Q Consensus 184 ~~~~~-----g~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 258 (505)
.+.++ +..++|.+++... +....++.....+.+++..++.++.....||+++++.+
T Consensus 153 ~~~~~~~~~~~~~~~p~i~~~~g-------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~e~~~~~~~------ 213 (448)
T PRK09848 153 IAASLTFVCLAFLIGPSIKNSSP-------------EEMVSVYHFWTIVLAIAGMVLYFICFKSTRENVVRIVA------ 213 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC-------------CchhhhHHHHHHHHHHHHHHHHHHHHcCcEeccCCCcc------
Confidence 54343 3344444332210 00000121111222333333334444445554321110
Q ss_pred ccCCCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHH
Q 010630 259 EEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGL 338 (505)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (505)
+....+++++.++| |+++...+..++.+.+........+.|+ ++.++.++ ..+.+..
T Consensus 214 ----------~~~~~~~~~~l~~n--~~f~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~----------~~~~~~~ 270 (448)
T PRK09848 214 ----------QPSLKISLQTLKRN--RPLFMLCIGALCVLISTFAVSASSLFYV-RYVLNDTG----------LFTVLVL 270 (448)
T ss_pred ----------CCCHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHhhhheeeE-eeecCChH----------HHHHHHH
Confidence 01122335556677 7888777777776665555544444443 22222111 1111222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHH
Q 010630 339 MLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAI 418 (505)
Q Consensus 339 ~~~~~~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 418 (505)
....+..+++.++.+++.||+|+|+.+.++.++.+++.+.+.+. +. .+.+..++...+.|++.+.
T Consensus 271 ~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~--------------~~-~~~~~~~~~~~l~g~G~~~ 335 (448)
T PRK09848 271 VQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWV--------------SV-WSLPVALVALAIASIGQGV 335 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc--------------Cc-hhHHHHHHHHHHHHHHHHH
Confidence 22345566788999999999999999999988887777665543 21 1345555666778888888
Q ss_pred HhhchhHhHhhhhccc-----ccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhc
Q 010630 419 TYSVPYALVSIRTESL-----GLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFG 468 (505)
Q Consensus 419 ~~~~~~~~~~~~~~~~-----~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g 468 (505)
..+..+++.+|..|.+ +++.|.++|+.++...+|..+++.+.|.+.+..|
T Consensus 336 ~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G 390 (448)
T PRK09848 336 TMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSG 390 (448)
T ss_pred HHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 8888999999988753 2457999999999999999999999999988765
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-25 Score=216.38 Aligned_cols=348 Identities=14% Similarity=0.073 Sum_probs=233.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHH
Q 010630 35 KVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVA 114 (505)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~ 114 (505)
...+......+......+.+|.+.+++|.++.+.+++.+++.++..++++++|+++| |+|||+.++. +.....++
T Consensus 10 ~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d----r~g~r~~~~~-~~~~~~~~ 84 (401)
T PRK11043 10 YLAGLSMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSD----RYGRKPVLLA-GLSLFALG 84 (401)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHh----hcCCcHHHHH-HHHHHHHH
Confidence 333333444456666677777788999999999999999999999999999999999 9999988776 44445555
Q ss_pred HHHHhcccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHh
Q 010630 115 VLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGY 194 (505)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~ 194 (505)
.+...+.+++ +.+++.+++.|++.+...+...+++.|.+|+++++ +..+.......+|..+++
T Consensus 85 ~~~~~~~~~~---------------~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~ 147 (401)
T PRK11043 85 SLGMLWVESA---------------AQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKAN--RVFATIMPLVALSPALAP 147 (401)
T ss_pred HHHHHHhcCH---------------HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHH--HHHHHHHHHHHHHHHHHH
Confidence 5555555554 67778888988888777777788999999988888 888888888888889998
Q ss_pred hccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCCCCCcchHHHHHH
Q 010630 195 ATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLW 274 (505)
Q Consensus 195 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (505)
.+++++.... +|++.|++.+++.++..++.++ .+|++++++++ ++ .+
T Consensus 148 ~i~~~l~~~~---------------g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--------------~~---~~ 194 (401)
T PRK11043 148 LLGAWLLNHF---------------GWQAIFATLFAITLLLILPTLR-LKPSKKARKQS--------------QD---AL 194 (401)
T ss_pred HHHHHHHhcC---------------ChHHHHHHHHHHHHHHHHHHHH-cCCCCCccccc--------------hH---HH
Confidence 8887643322 8999999888776666555443 34332111000 01 12
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHH
Q 010630 275 ELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEK 354 (505)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 354 (505)
+.++.+++ +.++...+..............+.+.++. + ++.++. ...+......+...+++++.++
T Consensus 195 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~-~g~s~~----------~~g~~~~~~~~~~~~g~~~~~~ 260 (401)
T PRK11043 195 TFKQLLKS--KTYLGNVLIFAACSAAFFAWLTGSPFILE-Q-MGYSPA----------DIGLSYVPQTIAFLVGGYGCRA 260 (401)
T ss_pred HHHHHHcC--hhHHHHHHHHHHHHHHHHHHHHHhHHHHH-H-cCCCHH----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 34455565 55554444333333344444555566553 2 222211 1112233345666778888999
Q ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhccc
Q 010630 355 LCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESL 434 (505)
Q Consensus 355 l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 434 (505)
+.||+++|+.........+++...+....... +. +.+..++...+.+++.+...+...+...+..|
T Consensus 261 l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 326 (401)
T PRK11043 261 ALQKWGGEQLLPWLLVLFAVSVIAIWLASLLS----------HP--SLVPLLIPFCVMAAANGAIYPIVVAQALRPFP-- 326 (401)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhc----------cC--cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc--
Confidence 99999998877655555544443332221000 11 23444555667777788777776666666654
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhhhhhHhh
Q 010630 435 GLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQL 466 (505)
Q Consensus 435 ~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~ 466 (505)
+++|++.|+.+.....+...++.+.|.+.+.
T Consensus 327 -~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~ 357 (401)
T PRK11043 327 -QATGKAAALQNTLQLGLCFLASLLVSALIST 357 (401)
T ss_pred -ccChHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 6799999999999888889999999988774
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-25 Score=216.77 Aligned_cols=356 Identities=13% Similarity=0.072 Sum_probs=236.0
Q ss_pred HHHHHHHHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHHhccccc
Q 010630 45 FGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADI 124 (505)
Q Consensus 45 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~ 124 (505)
+......+.+|.+.+++|.+..+.++..+++.++..+++++.|+++| |+|||+.++. +.....++.+.+.+++++
T Consensus 30 ~~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~d----r~Grr~~l~~-~~~~~~~~~~~~~~a~~~ 104 (413)
T PRK15403 30 LTTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSD----RIGRRPVLIT-GALIFTLACAATLFTTSM 104 (413)
T ss_pred HHHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHH----HcCchHHHHH-HHHHHHHHHHHHHHcCCH
Confidence 34455566677788999999999999999999999999999999999 9999998877 455555666666666665
Q ss_pred ccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhhccccccccc
Q 010630 125 GWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFK 204 (505)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l~~~~~~~~ 204 (505)
+.++++|+++|++.+...+...+++.|.+|+++|+ +++++......+|..+|+.+++.+....
T Consensus 105 ---------------~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~lg~~l~~~~ 167 (413)
T PRK15403 105 ---------------TQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGI--KLMAIITSIVLVAPIIGPLSGAALMHFV 167 (413)
T ss_pred ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 77888999999988766666778899999999999 9999999999999999999887643222
Q ss_pred cccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCCCCCcchHHHHHHHHHHHHhccc
Q 010630 205 ILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFS 284 (505)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (505)
+||+.|++.+++.++..+..++..||++++++++ .+.+...++.++.+++
T Consensus 168 ---------------gw~~~f~~~~~~~~i~~~~~~~~lp~~~~~~~~~-------------~~~~~~~~~~~~ll~~-- 217 (413)
T PRK15403 168 ---------------HWKVLFAIIAVMGLIAFVGLLLAMPETVKRGAVP-------------FSAKSVLRDFRNVFRN-- 217 (413)
T ss_pred ---------------CHHHHHHHHHHHHHHHHHHHHHhCCCCccccCCC-------------CChHHHHHHHHHHHcC--
Confidence 8999999988777776666566677764321100 0122334566777787
Q ss_pred HHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Q 010630 285 GTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFI 364 (505)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~~r~g~~~~ 364 (505)
|.++...+...+.......+..+.|.++.+ .++.++.. ..+.......+.++++.+.+++.+|..+++.
T Consensus 218 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~-~~g~s~~~----------~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 286 (413)
T PRK15403 218 RLFLTGAATLSLSYIPMMSWVAVSPVILID-AGGMTTSQ----------FAWTQVPVFGAVIVANAIVARFVKDPTEPRF 286 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhChHHHHH-hcCCCHHH----------HHHHHHHHHHHHHHHHHHHHHHhccCCchhH
Confidence 888887777666666666666666776643 33322211 1122222344555666677776655444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhcccccchhHHHHH
Q 010630 365 WGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGV 444 (505)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 444 (505)
......+..++..++....... +. +.+..++..++.+++.+...+...+..- .+.+ ..+|++.++
T Consensus 287 ~~~~~~~~~ig~~l~~~~~~~~----------~~--~~~~~~~~~~l~~~G~~~~~p~~~~~al--~~~~-~~~G~a~a~ 351 (413)
T PRK15403 287 IWRAVPIQLVGLALLIVGNLLW----------PH--VWLWSVLGTSLYAFGIGLIFPTLFRFTL--FSNN-LPKGTVSAS 351 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc----------cc--cHHHHHHHHHHHHHHHHHHhHHHHHHHh--ccCC-CCCcHHHHH
Confidence 3332223333333222211000 11 2333455666677777776655543222 2221 457999999
Q ss_pred HHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHH
Q 010630 445 LNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGIS 481 (505)
Q Consensus 445 ~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~ 481 (505)
.+.....+..+++...|++.+.. ....|...+++
T Consensus 352 ~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~ 385 (413)
T PRK15403 352 LNMVILMVMAVSVEIGRWLWFNG---GRLPFHLLAVV 385 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC---CchHHHHHHHH
Confidence 99999999999999999887762 23444444333
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-27 Score=237.20 Aligned_cols=368 Identities=14% Similarity=0.137 Sum_probs=249.0
Q ss_pred hhhhHHHHhCCC---chhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHHhcccccccccC
Q 010630 53 LLTPYVQELGIP---HAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLG 129 (505)
Q Consensus 53 ~~~~~~~~~g~s---~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (505)
+.+.+.++++++ +.+.+++.+++.++..+++++.|+++| |+|||+.++. +.+...++.++..+++++
T Consensus 111 ~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~D----r~Grr~~~~~-~~~~~~i~~~~~~~~~~~----- 180 (505)
T TIGR00898 111 FSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSD----RFGRKKVLLL-STLVTAVSGVLTAFSPNY----- 180 (505)
T ss_pred ccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhh----hccchHHHHH-HHHHHHHHHHHHHHcccH-----
Confidence 456667889998 899999999999999999999999999 9999998877 445555566666676665
Q ss_pred CCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhhcccccccccccccc
Q 010630 130 DRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFT 209 (505)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l~~~~~~~~~~~~~ 209 (505)
+.+++.+++.|++.+...+...+++.|++|+++|+ ++.++......+|.++++.++..+
T Consensus 181 ----------~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~--~~~~~~~~~~~~g~~~~~~~~~~~--------- 239 (505)
T TIGR00898 181 ----------TVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRA--IVGTLIQVFFSLGLVLLPLVAYFI--------- 239 (505)
T ss_pred ----------HHHHHHHHHHHhhccchHHHHHHHhheecChhhhH--HHHHHHHHHHHHHHHHHHHHHHHh---------
Confidence 78889999999999999999999999999999999 899999999999999888876541
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCccc-------------CCC---CC--cch--H
Q 010630 210 LTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEE-------------GHE---QS--SDV--H 269 (505)
Q Consensus 210 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~-------------~~~---~~--~~~--~ 269 (505)
.+||+.|++.++..++..+.. +++||+|+....+++.++.+ ..+ +. +++ +
T Consensus 240 ---------~~wr~~~~~~~i~~~~~~~~~-~~~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (505)
T TIGR00898 240 ---------PDWRWLQLAVSLPTFLFFLLS-WFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSS 309 (505)
T ss_pred ---------hHHHHHHHHHHHHHHHHHHHH-HhcCCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhh
Confidence 169999998887766655544 67888765322111110000 000 00 000 0
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHH
Q 010630 270 EAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITS 349 (505)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 349 (505)
+......++.+++ +.++...+...+.++.........+.+. +. + +... .......++..+++.
T Consensus 310 ~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~------------~~~~-~~~~~~~~~~~i~~~ 372 (505)
T TIGR00898 310 SKKQYSFLDLFRT--PNLRKTTLCLMMLWFTTAFSYYGLVLDL-GN-L------------GGNI-YLDLFISGLVELPAK 372 (505)
T ss_pred ccCCCcHHHHhCC--hHHHHHHHHHHHHHHHHHHHHHHHhccc-cc-c------------CCCh-HHHHHHHHHHHHHHH
Confidence 0000133445555 5666555444444433222111111111 00 0 1011 122334566777888
Q ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhh
Q 010630 350 VLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSI 429 (505)
Q Consensus 350 ~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 429 (505)
++.+++.||+|||+.+.++.++.+++.+++.+. +.. ..+.......+.+++.+...+..+.+..|
T Consensus 373 ~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~--------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 437 (505)
T TIGR00898 373 LITLLLIDRLGRRYTMAASLLLAGVALLLLLFV--------------PVD-LYFLRTALAVLGKFGITSAFQMVYLYTAE 437 (505)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHc--------------CCC-chHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999888888877766655 221 12334444455566666667778889999
Q ss_pred hhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHhccCCCCCC
Q 010630 430 RTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPRSSAQK 500 (505)
Q Consensus 430 ~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (505)
.+|+ +.|++++|+.+....+|++++|.+.+ +.+. + ....+.+.+++.+++.++.+ +.||++.++
T Consensus 438 ~~p~--~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~~-~--~~~~~~~~~~~~~~~~~~~~-~lpet~~~~ 501 (505)
T TIGR00898 438 LYPT--VVRNLGVGVCSTMARVGSIISPFLVY-LGEK-W--LFLPLVLFGGLALLAGILTL-FLPETKGVP 501 (505)
T ss_pred cccH--HHHhhhHhHHHHHHHHHHHHHhHHHH-HHHH-H--HhhHHHHHHHHHHHHHHHHH-cCcCCCCCC
Confidence 9999 99999999999999999999999998 4433 2 34456666666666655443 456665543
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-25 Score=216.16 Aligned_cols=386 Identities=13% Similarity=0.125 Sum_probs=246.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHH-HHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHH
Q 010630 33 LLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISI 111 (505)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~ 111 (505)
.+.+....+....++....+++|.++ +++|.++.+.|++.++..+...+++|+.|+++| |+|||+.++.......
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D----r~grr~~~~~~~~~~~ 79 (396)
T TIGR00882 4 FWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISD----KLGLKKHLLWIISGLL 79 (396)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCcHHHHHHHHHHHH
Confidence 45555556666677788888999887 568999999999999999999999999999999 9999998876433332
Q ss_pred HHHHHH--HhcccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHH
Q 010630 112 AVAVLL--IGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVG 189 (505)
Q Consensus 112 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 189 (505)
...... ....+.. .........+.+.+.+++.+...+...++..|..+ +++ +.++......++|
T Consensus 80 ~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~--~~~g~~~~~~~~g 145 (396)
T TIGR00882 80 VLFAPFFIYVFGPLL----------QSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--NSN--FEYGKARMFGCVG 145 (396)
T ss_pred HHHHHHHHHHhhhHH----------HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--hcc--cccchhhhhcccH
Confidence 222111 1111100 00111334555667777777777777777777543 234 4556677777888
Q ss_pred HHHHhhccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCCCCCcchH
Q 010630 190 NILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVH 269 (505)
Q Consensus 190 ~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 269 (505)
.++|+.+++.+.. .+|+..|++.+++..+..++.+...||+++++..+ + +.+.+++
T Consensus 146 ~~~g~~~~g~l~~----------------~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~---- 201 (396)
T TIGR00882 146 WALCASIAGILFS----------------IDPQIVFWLGSGFALILMLLLMFAKPKAPSSATVA-N---ALGANAS---- 201 (396)
T ss_pred HHHHHHHHhhhhc----------------cCchHHHHHHHHHHHHHHHHHHHhCCCCchhhhhh-c---ccccccC----
Confidence 8999888876321 18999999888777766655554445443221111 0 0000000
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHH
Q 010630 270 EAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITS 349 (505)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 349 (505)
+...++..+.+|+ |+++.++...+.....+.....+.+.|+.+.. .. . +. +............+...++.
T Consensus 202 ~~~~~~~~~~l~~--~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~-~~-~----~~--~~~~~g~~~~~~~i~~~~~~ 271 (396)
T TIGR00882 202 AFSLKLALELFRQ--RKFWMFVLYVVGVACVYDVFDQQFANFFTSFF-AT-P----QQ--GTRVFGYVTTMGELLNALIM 271 (396)
T ss_pred CCCHHHHHHHHcC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cc-c----cc--chHHHHHHHHHHHHHHHHHH
Confidence 1112345667777 66666555544444433334344556653322 10 0 00 10111122233456667777
Q ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhh
Q 010630 350 VLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSI 429 (505)
Q Consensus 350 ~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 429 (505)
+..+++.||+|+|+.+.++..+.++...+..... +.+..++..++.|++..........+..+
T Consensus 272 ~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~-----------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~ 334 (396)
T TIGR00882 272 FCAPLIINRIGAKNALLIAGTIMSVRIIGSSFAT-----------------TALEVVILKMLHAFEVPFLLVGCFKYITS 334 (396)
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcC-----------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999888887777666544431 34555666677777766655555556666
Q ss_pred hhcccccchhHHHHH-HHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHH
Q 010630 430 RTESLGLGQGLSLGV-LNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAIL 491 (505)
Q Consensus 430 ~~~~~~~~~g~~~g~-~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 491 (505)
..|+ +.+++..+. .+....+|+.+++.+.|++.|..| +...|.+.+++.++..++..+
T Consensus 335 ~~~~--~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G--~~~~f~~~~~~~~i~~~~~~~ 393 (396)
T TIGR00882 335 QFDV--RLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIG--FQGAYLVLGCIVLLFTLISVF 393 (396)
T ss_pred hCCc--ceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHH
Confidence 6676 777777766 678899999999999999999876 777888888777777665543
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3e-25 Score=213.89 Aligned_cols=355 Identities=13% Similarity=0.074 Sum_probs=242.6
Q ss_pred HHHHHHHHHHHHHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcc----hhHHHHHHHHHHHH
Q 010630 40 AGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRR----PFIVCGAISIAVAV 115 (505)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~----~~~~~~~~~~~~~~ 115 (505)
.++..++.+...+++|.+.+++|.|..++|++.+++.+...+++|++|.++| |+|||+ .+++.. .+...
T Consensus 13 ~~~~~~~~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~d----r~g~~~~~~~~~~~~~---~~~~~ 85 (382)
T PRK11128 13 YFGYFFAYGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVK----DPSQLIPALRLLALLT---LLFAV 85 (382)
T ss_pred HHHHHHHHHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHh----hhcchHHHHHHHHHHH---HHHHH
Confidence 4555567788889999999999999999999999999999999999999999 998842 222211 11122
Q ss_pred HHHhcccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhh
Q 010630 116 LLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYA 195 (505)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~ 195 (505)
......+++ +.+++.+.+.+++.+...+...++..++ .++|+ ++++......++|..+|+.
T Consensus 86 ~~~~~~~~~---------------~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~--~a~~~~~~~~~lg~~igp~ 146 (382)
T PRK11128 86 AFWFGAHSF---------------WLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIG--LDYGKVRLWGSIAFVIGSA 146 (382)
T ss_pred HHHHhcccH---------------HHHHHHHHHHHHHHcccccHHHHHHHHH--Hhhcc--CCcchHHHHHHHHHHHHHH
Confidence 222223333 6777788888888888888888888876 34566 7788888888999999999
Q ss_pred ccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCCCCCcchHHHHHHH
Q 010630 196 TGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWE 275 (505)
Q Consensus 196 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (505)
+++++.... +||..|++.++...+..+ ..+..||++++.+++ ++. ++..++
T Consensus 147 lgg~l~~~~---------------g~~~~f~~~~~~~~~~~~-~~~~~~~~~~~~~~~-------~~~------~~~~~~ 197 (382)
T PRK11128 147 LTGKLVSWF---------------GEQAILWILTAGVASMLL-GQLLRPTIMPQGESR-------QQE------SAGWPA 197 (382)
T ss_pred HHHHHHHHc---------------ChhHHHHHHHHHHHHHHH-HHHccCCCCCccccc-------ccc------ccccch
Confidence 998844332 899999877754444333 333344432111100 000 000123
Q ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 010630 276 LFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKL 355 (505)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l 355 (505)
.++.+|+ |+++......++.+........+.+.|+.+ .+.+... .+ .......+..++..++.+++
T Consensus 198 ~~~i~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~g~s~~~---------~g-~~~~~~~~~~~~~~~~~g~l 263 (382)
T PRK11128 198 WKALLKE--PTVWRFLLCVSLLQGSHAAYYGFSAIYWQA--AGYSAST---------IG-YLWSLGVVAEVLIFAFSNRL 263 (382)
T ss_pred HHHHHcC--hhHHHHHHHHHHHHHHhHhHHHHHHHHHHH--CCCCHhH---------HH-HHHHHHHHHHHHHHHHHHHH
Confidence 4556666 788877776676666666666677777632 2222111 11 22223456677777899999
Q ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhcccc
Q 010630 356 CRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLG 435 (505)
Q Consensus 356 ~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 435 (505)
.||+++|+.+..+.++.+++.++....+ +.+..++..++.|++.+...+....+..+. ++
T Consensus 264 ~~r~~~~~~l~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~-- 323 (382)
T PRK11128 264 FRRWSARDLLLLSAICGVVRWGLMGSTT-----------------ALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PG-- 323 (382)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHhhh-----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CH--
Confidence 9999999999888888877776655542 456677778888998888777777777775 44
Q ss_pred cchhHHHHHHH-HHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHH
Q 010630 436 LGQGLSLGVLN-LAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGG 486 (505)
Q Consensus 436 ~~~g~~~g~~~-~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 486 (505)
+++++.++..+ ....+|..+||.++|.+.|..| . ..+...+++.+++.
T Consensus 324 ~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g--~-~~~~~~~~~~~~~~ 372 (382)
T PRK11128 324 SEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLG--A-GVFWVMALVALPAL 372 (382)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--H-HHHHHHHHHHHHHH
Confidence 56688888876 4556788999999999999986 3 35555555555443
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-26 Score=228.17 Aligned_cols=367 Identities=11% Similarity=-0.005 Sum_probs=237.1
Q ss_pred HhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHHhcc--cccccccCCCCCCcch
Q 010630 60 ELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLS--ADIGWLLGDRGDFRPR 137 (505)
Q Consensus 60 ~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 137 (505)
+++++..+.|++.+.+.+++.+++++.|+++| |+|||+.+.....+ ..++.++..+. .++
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d----r~g~r~~l~~~~~~-~~~~~~~~~~~~~~~~------------- 131 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAG----KYVFKWSIGIGMFL-SSVISIVIPWAAGGGI------------- 131 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHH----HhCcchhhHHHHHH-HHHHHHHHHHHHHcCc-------------
Confidence 68899999999999999999999999999999 99999988774443 33443333222 222
Q ss_pred hHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhhcccccccccccccccccccccc
Q 010630 138 AIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVD 217 (505)
Q Consensus 138 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l~~~~~~~~~~~~~~~~~~~~~ 217 (505)
+.+++.|++.|++.+...+...++++|++|+++|+ +++++...+..+|..+++.+++.+.+..
T Consensus 132 --~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~--~~~~~~~~~~~~g~~i~~~l~~~l~~~~------------- 194 (465)
T TIGR00894 132 --ALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERS--RLLGMSTSGFQLGTFIFLPISGWLCESW------------- 194 (465)
T ss_pred --hHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcc-------------
Confidence 56788899999999999999999999999999999 9999999999999999999987643320
Q ss_pred ccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCccc--CCCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 010630 218 CANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEE--GHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTA 295 (505)
Q Consensus 218 ~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (505)
.+||+.|++.+++.++..++.+...+|+|+..++..+++++. +..+.++++++....+++.+++ +.+|...+..+
T Consensus 195 -~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 271 (465)
T TIGR00894 195 -GGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCISKFEKKYINSSLQGQKGSTRQSLPIKAIPKS--LPVWAIWFAIF 271 (465)
T ss_pred -CCCCeehhhhhHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHhhcccccCCCCCCCCHHHHhcC--HHHHHHHHHHH
Confidence 189999999988777776666666776654332211111000 0000000000001123455566 78888888888
Q ss_pred HHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH--------HH
Q 010630 296 LTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIW--------GI 367 (505)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~~r~g~~~~~--------~~ 367 (505)
........+..|.|.|+.+ .++.+... ..+...+..+...++.++.|+++||+++|+.. ..
T Consensus 272 ~~~~~~~~~~~~lp~~l~~-~~g~s~~~----------~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 340 (465)
T TIGR00894 272 GHFWLYTILPTYLPTFISW-VLRVSGKE----------NGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFN 340 (465)
T ss_pred HHHHHHHHHHHHHHHHHHH-HhCcChHH----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 8777777778888988854 33333221 12223345667788889999999997644211 11
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhcccccchhHHHHHHHH
Q 010630 368 SNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNL 447 (505)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 447 (505)
+......+...+.... . .. +.+..++...+.+.+.+...+.......|..| +..|.+.|+.+.
T Consensus 341 ~~~~~~~~~~~~~~~~-~-----------~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~g~~~g~~~~ 403 (465)
T TIGR00894 341 GIGGLGPGIFAYALPY-L-----------SA--AFYLTIIILTLANAVSSGPLAGVLINSLDLAP---RFLGFIKGITGL 403 (465)
T ss_pred HHHHHHHHHHHHHHHH-c-----------CC--chHHHHHHHHHHHHHhhhhhhhhhhchhhcCh---hHHHHHHHHHHH
Confidence 1111111111111110 0 00 22333333444444444333333444455554 689999999999
Q ss_pred HHHHHHHHHHhhhhhhHhhhcC-CCchHHHHHHHHHHHHHHHHHHh
Q 010630 448 AIVIPQIVVSMGSGPWDQLFGG-GNSPAFAVGGISALAGGLIAILA 492 (505)
Q Consensus 448 ~~~~~~~i~~~~~g~l~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~ 492 (505)
...++..++|.+.|.+.+..+. .+...|.+.++..+++.++....
T Consensus 404 ~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~ 449 (465)
T TIGR00894 404 PGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLIF 449 (465)
T ss_pred HHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeeee
Confidence 9999999999999998875321 13456777777777776555443
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-25 Score=212.57 Aligned_cols=384 Identities=16% Similarity=0.169 Sum_probs=256.3
Q ss_pred HHhC--CCchhH----HHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHHhcccccccccCCCC
Q 010630 59 QELG--IPHAWA----SIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRG 132 (505)
Q Consensus 59 ~~~g--~s~~~~----g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (505)
+.+| .++.+. +.+.+++.+++++++...|.++| |+|||..+.+... ...++.+++.++...
T Consensus 47 ~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~----~~GRK~~l~~~~~-l~~~~~~~~~~s~~~-------- 113 (485)
T KOG0569|consen 47 ERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLAD----RFGRKNALLLSNL-LAVLAALLMGLSKSA-------- 113 (485)
T ss_pred HhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhcchHHHHHHHH-HHHHHHHHHHHHHHh--------
Confidence 3455 555544 44556888999999999999999 9999987777444 444444444333221
Q ss_pred CCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhhccccccccccccccccc
Q 010630 133 DFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTS 212 (505)
Q Consensus 133 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l~~~~~~~~~~~~~~~~ 212 (505)
....+++++|++.|+..+.......-++.|..|++.|| ......+++..+|..++..++.- .+...
T Consensus 114 ----~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG--~~g~~~~~~~~~g~ll~~~~~l~--------~ilGt 179 (485)
T KOG0569|consen 114 ----PSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRG--ALGTLLQIGVVIGILLGQVLGLP--------SLLGT 179 (485)
T ss_pred ----hhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhcc--HHHHHHHHHHHHHHHHHHHHccH--------HhcCC
Confidence 33488999999999999999999999999999999999 88888899999999998776532 11111
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCC-CCCCCc----------ccCCCC--------Ccch--HHH
Q 010630 213 ACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHD-QSAPFS----------EEGHEQ--------SSDV--HEA 271 (505)
Q Consensus 213 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~-~~~~~~----------~~~~~~--------~~~~--~~~ 271 (505)
...|.+.+.+..+..+ ..++.+.+.||+|+..-. ++++++ .+++++ .+.+ .+.
T Consensus 180 -----~~~W~~l~~~~~i~~~-~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~ 253 (485)
T KOG0569|consen 180 -----EDLWPYLLAFPLIPAL-LQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKK 253 (485)
T ss_pred -----CcchHHHHHHHHHHHH-HHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccc
Confidence 1268887777765444 445566789999975433 111111 000000 0000 000
Q ss_pred HHHHHHHHHhcc--cHHHHHHHHHHHHHHH-hhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHH
Q 010630 272 FLWELFGTFRYF--SGTIWIILIVTALTWL-GWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGIT 348 (505)
Q Consensus 272 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 348 (505)
...++++.+++. ++.....+...+..++ +......|.+..+.+. + . ....+.+.....++...+.
T Consensus 254 ~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~a--G--------~--~~~~a~~an~~~g~v~~~~ 321 (485)
T KOG0569|consen 254 KQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTA--G--------F--TPEEAQYANLGIGIVNLLS 321 (485)
T ss_pred cCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHc--C--------C--CHHHHHHHHHHHHHHHHHH
Confidence 111344555542 2233333344444443 3444555555554211 1 1 1112245555567788899
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHH-hhchhHhH
Q 010630 349 SVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAIT-YSVPYALV 427 (505)
Q Consensus 349 ~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~ 427 (505)
++++.++.||.|||++++.+..++.+..+++.......... . ..-.+..+...+++.+.++.. -|+++-+.
T Consensus 322 t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~-------~-~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~ 393 (485)
T KOG0569|consen 322 TLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSF-------G-SWLSYLCIAAIFLFIISFAIGPGPIPWFIG 393 (485)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHh-------h-hHHHHHHHHHHHHHHHhhhcCCCchhHHHH
Confidence 99999999999999999999888888777766554322220 0 001122344555555555555 37899999
Q ss_pred hhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHhccCCCCCC
Q 010630 428 SIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPRSSAQK 500 (505)
Q Consensus 428 ~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (505)
+|++|+ +.|..++++......+..++.......+.+..|. ..|++..+.+++..+..++..||+|.|.
T Consensus 394 aELf~~--~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~---~~filF~i~~~~~~i~~~~~lPETkgr~ 461 (485)
T KOG0569|consen 394 AELFPQ--SARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP---YVFILFVIPLAIFLIYLYRYLPETKGRT 461 (485)
T ss_pred HHhCCc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---hhhHHHHHHHHHHHHHHHHhCcccCCCC
Confidence 999999 9999999999999999999999999999999872 6778888888888889999999998764
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-24 Score=210.53 Aligned_cols=381 Identities=12% Similarity=0.063 Sum_probs=248.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHH
Q 010630 33 LLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIA 112 (505)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~ 112 (505)
++.++...+...+......+.+|.+.+++|.|..+.|++.+...++..+++++.|++.| |+|||+.++. +.+...
T Consensus 5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~----r~G~r~~~~~-g~~l~~ 79 (410)
T TIGR00885 5 FALITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMK----KLSYKAGILL-GLFLYA 79 (410)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCchHHHHH-HHHHHH
Confidence 34455555555666677778889999999999999999999999999999999999999 9999988877 444455
Q ss_pred HHHHHHhcccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHH
Q 010630 113 VAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNIL 192 (505)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~i 192 (505)
++.+++..+.. ..+++.+++.+++.|++.+...+..++++.+..|+++|+ +..++.+...++|..+
T Consensus 80 ~g~~l~~~~~~------------~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~lG~~~ 145 (410)
T TIGR00885 80 LGAFLFWPAAE------------IMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTAT--RRLNLAQSFNPFGSII 145 (410)
T ss_pred HHHHHHHHHHh------------hccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHH--HHHHHHHHHHHHHHHH
Confidence 55544322211 012377788899999999999999999999999999998 8999999999999999
Q ss_pred Hhhcccccccccccccc-----------ccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccC
Q 010630 193 GYATGSFSGWFKILPFT-----------LTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEG 261 (505)
Q Consensus 193 g~~l~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 261 (505)
++.+++.+.....-+.. ..........+||+.|.+.+++.++..++.. +.++++.++ ++ + +
T Consensus 146 g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~-~~~~p~~~~-~~---~---~ 217 (410)
T TIGR00885 146 GMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIM-LTKMPALNH-SD---A---K 217 (410)
T ss_pred HHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCCc-cc---c---c
Confidence 99887762110000000 0000000113699999888876665544332 222221111 00 0 0
Q ss_pred CCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHH
Q 010630 262 HEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLN 341 (505)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (505)
+ .+..++..+.+|+ |.++..++..++..........|.+.|..+...+.+ .+. ........
T Consensus 218 -~------~~~~~~~~~~~~~--~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~--------~~~--a~~~~~~~ 278 (410)
T TIGR00885 218 -Q------ISFSASLSRLARI--RHYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMT--------AGF--AANYNIGA 278 (410)
T ss_pred -c------ccchhhHHHHHhC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC--------HHH--HHHHHHHH
Confidence 0 0001122344555 666666666666555555666777777632111100 011 11112222
Q ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhh
Q 010630 342 SVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYS 421 (505)
Q Consensus 342 ~~~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 421 (505)
.....++.++.+++.||+++|+.+.++..+..+..++.... ++ ........+.|++.+..+|
T Consensus 279 ~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~--------------~~----~~~~~~l~~~glf~s~~fp 340 (410)
T TIGR00885 279 MVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFA--------------GG----HVGLYCLTLCSAFMSLMFP 340 (410)
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc--------------CC----hHHHHHHHHHHHHHHHHHH
Confidence 34567889999999999999999888877777776666654 21 2235666777888888889
Q ss_pred chhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhc----CCCchHHHHHHHH
Q 010630 422 VPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFG----GGNSPAFAVGGIS 481 (505)
Q Consensus 422 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g----~~~~~~~~~~~~~ 481 (505)
..+++..+..++ +......++... .+|+.+.|.+.|.+.|..| ++....|++-..+
T Consensus 341 ~i~sl~~~~~g~--~~~~~s~~l~~~--~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~ 400 (410)
T TIGR00885 341 TIYGIALKGLGQ--DTKYGAAGLVMA--IIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLC 400 (410)
T ss_pred HHHHHHHhhhhh--hhhhhHHHHHHH--HhccchHHHHHHHHHHHhcccccCccchHHHHHHHH
Confidence 999999999886 444333333332 3999999999999999642 1244556554333
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.8e-25 Score=210.19 Aligned_cols=349 Identities=11% Similarity=0.058 Sum_probs=224.9
Q ss_pred HHHHHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccC-CCCCCcchhHHHHHHHHHHHHHHHhccccccc
Q 010630 48 ALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCT-SRFGRRRPFIVCGAISIAVAVLLIGLSADIGW 126 (505)
Q Consensus 48 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~-~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (505)
....+.+|.+.++.|+|.+++|+.... .+...+ .+++|.++||.+ +|+||||++++.+.+...+....+.+.++.
T Consensus 5 ~~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~-- 80 (356)
T TIGR00901 5 GLVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPS-- 80 (356)
T ss_pred hhHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcc--
Confidence 344567788899999999999999755 444444 899999999653 346999988766666666665555444322
Q ss_pred ccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhhccccccccccc
Q 010630 127 LLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKIL 206 (505)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l~~~~~~~~~~ 206 (505)
...+.+....++.+.+.+...++..+++.|++|+++|+ ++.++...+.++|.++++.+++.+....
T Consensus 81 ----------~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~--~~~~~~~~~~~~G~~~~~~l~~~l~~~~-- 146 (356)
T TIGR00901 81 ----------TDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELG--YGSTIYIVGYRAGMLLSGSLALVLASPE-- 146 (356)
T ss_pred ----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhc--hHHHHHHHHHHHHHHHHHHHHHHHhhhc--
Confidence 12244555555667777788888999999999999999 9999999999999999998887632211
Q ss_pred cccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCCCCCcchHHHHHHHHHHHHhccc-H
Q 010630 207 PFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFS-G 285 (505)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 285 (505)
... ....++||..|++.++..++..++.++..||+++.++++ + +++++..+.+.+.+++.. +
T Consensus 147 ---g~~--~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~~~~~~~---------~---~~~~~~~~~~~~~~~~~~~~ 209 (356)
T TIGR00901 147 ---FAN--TGLITLWGYIFFWTALLILPGLLVTLFLAKEPQEDASVP---------K---PLTQAVLKPIREFFQRKNMI 209 (356)
T ss_pred ---ccc--cccccccHHHHHHHHHHHHHHHHHHHHhccCCCcccccc---------h---hHHHHHHHHHHHHHHhcCch
Confidence 000 001225999999988776665555554556643211000 0 001111223334444411 2
Q ss_pred HHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Q 010630 286 TIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIW 365 (505)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~~r~g~~~~~ 365 (505)
.++.+.+..++...+......+.+.|+.+ ++.++.+ .+........+..+++.++++++.||+|+|+.+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~g~~~~~---------~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l 278 (356)
T TIGR00901 210 QALLLLLLIVLYKLGDSAATVLTTLFLLD--MGFSKEE---------IALVAKINGLLGAILGGLIGGIIMQPLNILYAL 278 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCHHH---------HHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 36666555566666666666777877743 3222211 111111122345668889999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhcccccchhHHHHHH
Q 010630 366 GISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVL 445 (505)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~ 445 (505)
..+.++.++...++.+......+.+. + ..+.+......++.+++.+...+...++++|.+|+ +++|+.+|+.
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~--~~~g~~~g~~ 350 (356)
T TIGR00901 279 LLFGIVQALTNAGFVWLASNGHHDGI-----T-FPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNP--KFGATQMALL 350 (356)
T ss_pred HHHHHHHHHHHHHHHHHHhcCccccc-----c-cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCC--CccHHHHHHH
Confidence 88887777766655443211000000 0 01345556666777888898899999999999999 9999999998
Q ss_pred HHHHH
Q 010630 446 NLAIV 450 (505)
Q Consensus 446 ~~~~~ 450 (505)
++..+
T Consensus 351 ~~~~~ 355 (356)
T TIGR00901 351 SSLSA 355 (356)
T ss_pred HHHHh
Confidence 77654
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.1e-24 Score=204.35 Aligned_cols=377 Identities=15% Similarity=0.055 Sum_probs=240.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHhCCCchhHHHH--HHHhhhhhhhccccc-ceeccccCCCCCCcchhHHHHHH
Q 010630 33 LLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASII--WLCGPVSGLFVQPLV-GHFSDRCTSRFGRRRPFIVCGAI 109 (505)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~--~~~~~l~~~i~~~~~-G~l~D~~~~r~Grr~~~~~~~~~ 109 (505)
...+...++...+.+....+++|.++++.|.|.+++|++ .+.+.+...+.+|++ ++.+| |+||||.+++...+
T Consensus 3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~----~~g~r~~~i~~~~~ 78 (390)
T TIGR02718 3 VITLGLLYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSW----RLGRRRSWVLPMQC 78 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccc----cCCcchhHHHHHHH
Confidence 344556677777888889999999999999999999997 466788888888988 45788 99999998665433
Q ss_pred HHHHHHHHHh-cccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHH
Q 010630 110 SIAVAVLLIG-LSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAV 188 (505)
Q Consensus 110 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 188 (505)
.......... +.... ....+.+....+..+..+...+...++..|..++++++ ...+....+..+
T Consensus 79 ~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~--~~~~~~~~g~~l 144 (390)
T TIGR02718 79 LVSACLASLALVGPDV------------AGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLA--KGNAVQIAGVMI 144 (390)
T ss_pred HHHHHHHHHHcCCcch------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhh--HHHHHHHHHHHH
Confidence 3332222222 11110 11123334444555667777788888888988888878 777777777788
Q ss_pred HHHHHhhccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCCCCCcch
Q 010630 189 GNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDV 268 (505)
Q Consensus 189 g~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 268 (505)
|..+|+...+++.... +||..|++.+++..+..+..++..||++++ +++
T Consensus 145 G~~~g~~~~~~l~~~~---------------gw~~~f~~~a~l~~~~~~~~~~~~~~~~~~-~~~--------------- 193 (390)
T TIGR02718 145 GFFGGGAGTLVLFGKF---------------GQRPAFLLVACVPLASLVCVLWLKDRAVAS-PEA--------------- 193 (390)
T ss_pred HHHHHHHHHHHHHHHh---------------CHHHHHHHHHHHHHHHHHHHHHcCCCCcCc-ccc---------------
Confidence 8888886655532222 899999999877766655554443332211 000
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHH--HHH-HHH
Q 010630 269 HEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLM--LNS-VVL 345 (505)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~ 345 (505)
+++..++.++.+|+ |.++......++...+......+.+.|+.+ . +. +....+.. ... ...
T Consensus 194 ~~~~~~~~~~~l~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~-G~------------s~~~ig~~~~~~~~~~~ 257 (390)
T TIGR02718 194 PLARRASLFRFFRR--PLAWSLLALALLSAMTAVSGFGLSKLYLVD-A-GW------------PLEWIGRLGMAGGAVTV 257 (390)
T ss_pred chhhHHHHHHHHcC--cCHHHHHHHHHHHHHHHHHHHHHhhHHHHh-c-CC------------CHHHHHHHHhHHHHHHH
Confidence 00112345566676 666666666666666566666667777642 2 22 11222332 222 344
Q ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhH
Q 010630 346 GITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYA 425 (505)
Q Consensus 346 ~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 425 (505)
.++.++.|++.||+|+|+.+..+..+.++........... ..............+.++..+...+..++
T Consensus 258 ~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 326 (390)
T TIGR02718 258 LLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAF-----------WLAPGIAVAWSCSAFGSLITGITSVAIYT 326 (390)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHc-----------ccCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667899999999999999887766553333222221100 00001222333334445556666666666
Q ss_pred hHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHH
Q 010630 426 LVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLI 488 (505)
Q Consensus 426 ~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 488 (505)
...+..++ ++.+|+.+++.+...++|..++|.++|.+.|..| +...|...+++.+++.+.
T Consensus 327 ~~~~~~~~-~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G--~~~~f~~~~~~~l~a~~~ 386 (390)
T TIGR02718 327 AFMRFAGD-GDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFG--YAGGFLSGTVLAVLAILL 386 (390)
T ss_pred HHHHHhCc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--cHHHHHHHHHHHHHHHHH
Confidence 66666543 2788999999999999999999999999999986 566777777666665543
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-25 Score=214.45 Aligned_cols=357 Identities=13% Similarity=0.082 Sum_probs=225.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhh-HHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHH
Q 010630 36 VASVAGGIQFGWALQLSLLTP-YVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVA 114 (505)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~ 114 (505)
.....+.....+....+++|. +.+++|+|+.+.+++.++..++..+++++.|+++| |+|||+.++. +.+...++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~g~r~~~~~-~~~~~~i~ 80 (366)
T TIGR00886 6 SWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVD----KFGPRYTTTL-SLLLLAIP 80 (366)
T ss_pred HHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHH----HhCchHHHHH-HHHHHHHH
Confidence 334444445566777788885 66899999999999999999999999999999999 9999988877 45555666
Q ss_pred HHHHhccc-ccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHH
Q 010630 115 VLLIGLSA-DIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILG 193 (505)
Q Consensus 115 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig 193 (505)
.+++.+.+ ++ +.+++.+++.|++.+. ..+..++++|++|+++|+ +++++.....++|..++
T Consensus 81 ~~~~~~~~~~~---------------~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~r~--~~~~~~~~~~~~g~~~~ 142 (366)
T TIGR00886 81 CLWAGLAVQSY---------------SVLLLLRLFIGIAGGS-FASCMPWISFFFPKKIQG--TALGLAAGWGNMGGGVA 142 (366)
T ss_pred HHHHHHHhhhH---------------HHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhhhh--HHHHHHHHHhHHHHHHH
Confidence 66665555 54 6777889998988554 566788999999999999 99999887888888777
Q ss_pred hhccccccccccccccccccccccccchhHHH-HHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCCCCCcchHHHH
Q 010630 194 YATGSFSGWFKILPFTLTSACNVDCANLKSAF-FLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAF 272 (505)
Q Consensus 194 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (505)
+.+++.+... ......+....+||+.| ...+++..+..++.....+|.+++++++++.+.+++.. ..++..
T Consensus 143 ~~i~~~l~~~-----~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 214 (366)
T TIGR00886 143 QFVMPPIIGS-----LIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGADTPPGKPATGKLSFKGARW---SVGTGA 214 (366)
T ss_pred HHHHHHHHHH-----HHhcccccccccccchhHHHHHHHHHHHHHHHHHhcccCCcccccchhcccccccc---cccchh
Confidence 7776542110 00000000112799988 44455555555555555666553322111111100000 011112
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHH
Q 010630 273 LWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLM 352 (505)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 352 (505)
.++.++.+++ |+++...+..++..........+.+.|+.+ .++.++.. .........+...++.++.
T Consensus 215 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~----------~~~~~~~~~~~~~~~~~~~ 281 (366)
T TIGR00886 215 LGDQLKVFRD--RHTWILALLYSVTFGSFLGVSSIFAMFFKD-QFGLSKVT----------AGAYASLGGLLGSLARPLG 281 (366)
T ss_pred HHHHHHHHhc--cchhhHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCcHHH----------HHHHHHHHHHHHHHHhhcc
Confidence 2344556666 666766666665555555666677777743 33322211 1222333566677888999
Q ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhc
Q 010630 353 EKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTE 432 (505)
Q Consensus 353 g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 432 (505)
+++.||+|+|+.+..+......+..++.... ....+.+.......+.++..+......++++.+..|
T Consensus 282 g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 348 (366)
T TIGR00886 282 GAISDRLGGARKLLMSFLGVAMGAFLVVLGL-------------VSPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR 348 (366)
T ss_pred chHHHhhccchhHHHHHHHHHHHHHHHHhcC-------------CCcchHHHHHHHHHHHHHHhccccchhhhcchhhch
Confidence 9999999998887776666555555444331 100023333333444444455555556677777765
Q ss_pred ccccchhHHHHHHHHHHHHH
Q 010630 433 SLGLGQGLSLGVLNLAIVIP 452 (505)
Q Consensus 433 ~~~~~~g~~~g~~~~~~~~~ 452 (505)
+++|+++|+.+...++|
T Consensus 349 ---~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 349 ---RATGAVSGLVGAIGNLG 365 (366)
T ss_pred ---hhcccHHHHHHHhccCC
Confidence 78999999988876654
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-24 Score=200.72 Aligned_cols=397 Identities=13% Similarity=0.136 Sum_probs=255.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHH-hCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHH
Q 010630 30 LRKLLKVASVAGGIQFGWALQLSLLTPYVQE-LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGA 108 (505)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~ 108 (505)
++..+..+...+...+.++...++.+.++++ .|+|.+++|.+.++..+...+.+|+.|.++| |.|.||.++....
T Consensus 6 ~~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~D----klg~kK~Ll~~i~ 81 (412)
T PF01306_consen 6 NKNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISD----KLGLKKHLLWFIA 81 (412)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHH----HCTTCSHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcc----hhhhhHHHHHHHH
Confidence 3456667777777778899999999999965 9999999999999999999999999999999 9997776654322
Q ss_pred HHHH--HHHHHHhcccccccccCCCCCCcchhHH-HHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHH
Q 010630 109 ISIA--VAVLLIGLSADIGWLLGDRGDFRPRAIA-VFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLF 185 (505)
Q Consensus 109 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 185 (505)
+..+ ..++...+.|-. + .+.+ ..+++....++......+...+++.+....++ .-.|-..++
T Consensus 82 ~l~~l~~pff~~v~~pll--------~---~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~sr~~~----feYG~~R~w 146 (412)
T PF01306_consen 82 ILLLLFGPFFIYVFGPLL--------Q---SNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVSRRNG----FEYGRARMW 146 (412)
T ss_dssp HHHHTCHHHHHHTHHHHH--------H---TT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHHHHHS----S-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH--------H---HHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHhc----CCcchHHHH
Confidence 2221 222222221111 0 0001 12222222344444445555666665543322 344556777
Q ss_pred HHHHHHHHhhccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCCCCC
Q 010630 186 MAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQS 265 (505)
Q Consensus 186 ~~~g~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 265 (505)
.++|.+++..++|.+.. .+....|++.....++..++.++..|+.+++....+.. .
T Consensus 147 GSig~ai~s~~~G~L~~----------------i~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~~--------~ 202 (412)
T PF01306_consen 147 GSIGFAIASLLAGILFN----------------INPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADAL--------G 202 (412)
T ss_dssp HHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTTS--------S
T ss_pred hhHHHHHHHHHhheeee----------------eCccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhccc--------c
Confidence 78888888887776211 14456677666555544444444444433322211100 0
Q ss_pred cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHH--HHHH
Q 010630 266 SDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLM--LNSV 343 (505)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 343 (505)
.++++...+++.+.+|+ |++|.+.+........+..+...++.|.. ..++ + .+.....++.+ ...+
T Consensus 203 ~~~~~~~~~~~~~l~k~--~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~-~~f~-~--------~~~g~~~~G~l~s~~v~ 270 (412)
T PF01306_consen 203 AKKDKVSLKDVLSLFKM--RNFWFFVLFVIGVAAIYDVFDQQFPIYFA-SFFQ-S--------AGQGNQMYGYLWSVQVF 270 (412)
T ss_dssp S------HHHHHHHTTS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTSS-S--------HHHHHHHHHHHHHHHHH
T ss_pred cCCCCCcHHHHHHHhcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhc-c--------cccChhHHhHHHHHHHH
Confidence 11233346788888898 89998877665555445554444444442 1111 0 01111123332 3456
Q ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhch
Q 010630 344 VLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVP 423 (505)
Q Consensus 344 ~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 423 (505)
..++...+.+++.+|+|.|+.++++..++.+-..+..+.+ +++.+.+.-.+.++..+......
T Consensus 271 ~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~-----------------~~~~i~~~klLH~~e~~l~lva~ 333 (412)
T PF01306_consen 271 LEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFAT-----------------NPWVISLIKLLHALEFPLLLVAA 333 (412)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT-------------------SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhc-----------------chHHHHHHHHHHHHHHHHHHHHH
Confidence 6677778999999999999999999999999999988874 57888899999999999999889
Q ss_pred hHhHhhhhcccccchhHHHHHH-HHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHhccCCCCCCCC
Q 010630 424 YALVSIRTESLGLGQGLSLGVL-NLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPRSSAQKPR 502 (505)
Q Consensus 424 ~~~~~~~~~~~~~~~g~~~g~~-~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (505)
.-++++.+|+ |..++.+.+. +...+++..+.+.++|.+.|+.| +..+|++.+.+.+...++..+..+++++....
T Consensus 334 fkYI~~~fd~--rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G--~~~tylimg~iv~~~~li~~f~l~~~~~~~~~ 409 (412)
T PF01306_consen 334 FKYITAHFDK--RLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIG--FQHTYLIMGLIVLPFTLISAFTLKKDKKQIVH 409 (412)
T ss_dssp HHHHHHHS-G--GGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHS--SSSTTCC
T ss_pred HHHHHHhCCH--hHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcC--cHHHHHHHHHHHHHHHHHheeeecCCCccccc
Confidence 9999999998 8888888874 68889999999999999999998 67788888888888887888877766655433
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.3e-24 Score=210.09 Aligned_cols=407 Identities=14% Similarity=0.145 Sum_probs=255.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHHHH---hCCCchhHHHHHHHhhhhhhhcccccceeccccCCC-CCCcchhHHH
Q 010630 31 RKLLKVASVAGGIQFGWALQLSLLTPYVQE---LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSR-FGRRRPFIVC 106 (505)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r-~Grr~~~~~~ 106 (505)
+.++.+....+...++++...+++|.|+++ +|.+..+.+++.+.+.+...++++++|+++| | +|||+.++.
T Consensus 10 ~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laD----r~~G~~~~l~~- 84 (475)
T TIGR00924 10 KPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGD----RVWGTKKTMVL- 84 (475)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHH----hhcchHHHHHH-
Confidence 345555556666678888888899999854 8999999999999999999999999999999 8 899998887
Q ss_pred HHHHHHHHHHHHhcccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccc---cchhhHhHHHH
Q 010630 107 GAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDH---RRTRVANAYFS 183 (505)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---r~~~~~~~~~~ 183 (505)
+.+...++.+++.++++. +.+.+++.+.+++.+...+...++++|++|+++ |+ +++++..
T Consensus 85 ~~~~~~~g~~~~~~~~~~---------------~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~--~~~~~~~ 147 (475)
T TIGR00924 85 GGIVLMLGHFMLAMSIYP---------------DLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRD--GGFTLFY 147 (475)
T ss_pred HHHHHHHHHHHHHhcccH---------------hHHHHHHHHHHhccccccCCHHHHHHHhcCCCCccccc--ceehhHH
Confidence 445566666666665543 566678888899999999999999999998764 66 7899999
Q ss_pred HHHHHHHHHHhhccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCCC
Q 010630 184 LFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHE 263 (505)
Q Consensus 184 ~~~~~g~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 263 (505)
...++|.++|+.+++++.... +|++.|.+.++..++.. +.++..++..++..+++++.++++.+
T Consensus 148 ~~~niG~~ig~~l~g~l~~~~---------------g~~~~f~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (475)
T TIGR00924 148 MSINIGSFISPLLAGVIAENY---------------GYHVGFNLAAVGMVIGL-LTFFAGRHMLRDIGSVPDPLSGQGKT 211 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhc---------------ChHHHHHHHHHHHHHHH-HHHHHcccccccCCCCCCCcchhhhh
Confidence 999999999999988743322 89999998775544443 33333333221111111100000000
Q ss_pred CCcchHHH-------------------H----------------HHHHH-----HHHhcccHHHHHHHHHHHHHHHhhHh
Q 010630 264 QSSDVHEA-------------------F----------------LWELF-----GTFRYFSGTIWIILIVTALTWLGWFP 303 (505)
Q Consensus 264 ~~~~~~~~-------------------~----------------~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (505)
. ...... . .+... +.-|++.+.+..+++...+.+..+.-
T Consensus 212 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~Q 290 (475)
T TIGR00924 212 Y-GKLLLALLAALALVFFCAWLMHHVVIANILLMTVTLAVIIFFFRLAFKPRLDAVARNKMYAYIVLFLEAVVFWVLYAQ 290 (475)
T ss_pred h-HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 0 000000 0 00000 00011001222233333344443333
Q ss_pred HHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHH----HHHHH-hcchHHH--HHHHHHHHHHH
Q 010630 304 FLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLME----KLCRK-WGAGFIW--GISNILMALCF 376 (505)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g----~l~~r-~g~~~~~--~~~~~~~~~~~ 376 (505)
.....+.+..+. .+.+.. .+ .+..+ +...++.+..++..++.. ++.|| .+.+... .+|.++.++++
T Consensus 291 ~~s~l~l~~~~~-~~~~~~---~~--~ip~~-~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~ 363 (475)
T TIGR00924 291 MPTSLNFFADNN-MHHEML---GM--SVPVI-WFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASF 363 (475)
T ss_pred hhhHHHHHHHHh-cccccc---ce--EECHH-HHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 333334443222 121110 11 11122 223345555555555444 44443 2223333 67888888887
Q ss_pred HHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHH
Q 010630 377 LAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVV 456 (505)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~ 456 (505)
....+.....++ +...+.++.++..++.+++.....+..++++.+..|+ +.||+++|++.....+|..++
T Consensus 364 ~~~~~~~~~~~~--------~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~--~~~g~~~g~~~l~~~~g~~l~ 433 (475)
T TIGR00924 364 LTFAASIWFADA--------GGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQ--RLMGQMLGMWFLAQAMGSLLG 433 (475)
T ss_pred HHHHHHHhhcCC--------CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHHHHH
Confidence 776654211111 1122678888899999999999999999999999999 999999999999999999999
Q ss_pred HhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHhccC
Q 010630 457 SMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPR 495 (505)
Q Consensus 457 ~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (505)
+.+.....+..+ ....|...++.+++..++.++..|.
T Consensus 434 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (475)
T TIGR00924 434 GYLATFGAVPQG--VTGVFGKIGLVTLLVGVVMALMVPW 470 (475)
T ss_pred HHHHHHHhcccc--hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 888887766543 4445666666666666555555443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.7e-24 Score=206.63 Aligned_cols=354 Identities=15% Similarity=0.114 Sum_probs=222.6
Q ss_pred hhhhHHHHhC--CCchhHHHHHHH-----hhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHHhcccccc
Q 010630 53 LLTPYVQELG--IPHAWASIIWLC-----GPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIG 125 (505)
Q Consensus 53 ~~~~~~~~~g--~s~~~~g~~~~~-----~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (505)
..+.+.++.. .++.+.+.+.+. ..+...+++++.|+++| |+|||+.++. +.+...++.+++.+++++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~d----r~g~r~~l~~-~~~~~~~~~~~~~~~~~~~ 89 (394)
T TIGR00883 15 AAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGD----RIGRKKTLVI-TLLMMGIGTLLIGLLPSYA 89 (394)
T ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhh----hhhhHHHHHH-HHHHHHHHHHHHhhCCChh
Confidence 3334444432 445666655443 33444578899999999 9999998887 5555666666666666541
Q ss_pred cccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhhcccccccccc
Q 010630 126 WLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKI 205 (505)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l~~~~~~~~~ 205 (505)
. ........+++.|++.|++.+...+...+++.|++|+++|+ +..++......+|..+++.++......
T Consensus 90 ~-------~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~--~~~~~~~~~~~~G~~i~~~~~~~~~~~-- 158 (394)
T TIGR00883 90 T-------IGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRG--FYGSFQQVGAPVGLLLAALTVLLLSYL-- 158 (394)
T ss_pred h-------hHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccch--HHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 0 00111235778899999999999999999999999999999 999999999999999998876542110
Q ss_pred ccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCCCCCcchHHHHHHHHHHHHhcccH
Q 010630 206 LPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSG 285 (505)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (505)
.... .....+||+.|.+.+++.++.. +.....+|+++.+.+++++ ++ . .++.++.+++.++
T Consensus 159 ---~~~~--~~~~~~w~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------~~----~---~~~~~~~~~~~~~ 219 (394)
T TIGR00883 159 ---LGDD--ALLEWGWRIPFLVSAVLVLIGL-YLRRNLEETPVFEKAQEKH------KK----K---RGPIRETLTKHRK 219 (394)
T ss_pred ---cCHH--HhhccchHHHHHHHHHHHHHHH-HHHHhcCCChhHHHHHhcc------cc----c---cCCHHHHHHhchH
Confidence 0000 0011389999988775554433 3334455544322111000 00 0 0122333444323
Q ss_pred HHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Q 010630 286 TIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIW 365 (505)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~~r~g~~~~~ 365 (505)
.++......++..........+.+.|+.++ ++.+.. ..........+...++.++.+++.||+|||+.+
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~----------~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~ 288 (394)
T TIGR00883 220 PFLLGLGLVIATTTTFYLITTYLPTYLTQT-LGLSAN----------SALLVLMLSLILFFITIPLSGALSDRIGRRPVL 288 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCChh----------HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHH
Confidence 455555555555555556666777776432 222211 112223345667788889999999999999987
Q ss_pred HHHHHHHHHHH-HHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhcccccchhHHHHH
Q 010630 366 GISNILMALCF-LAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGV 444 (505)
Q Consensus 366 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 444 (505)
..+..+..+.. ....... + +. +.+.......+.+++.+...+..++++.|.+|+ ++|+++.|+
T Consensus 289 ~~~~~~~~~~~~~~~~~~~----~--------~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~--~~~~~~~~~ 352 (394)
T TIGR00883 289 IIFTVLAALLAVPLLMALL----D--------SG--SFTLFFFLVLGLALIGGMYTGPMGSFLPELFPT--EVRYTGASL 352 (394)
T ss_pred HHHHHHHHHHHHHHHHHHh----c--------CC--chHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCc--cceeeEeee
Confidence 75544433322 2222111 0 11 344555666777888878888888999999998 889999987
Q ss_pred -HHHHHHHHHHHHHhhhhhhHhhhc
Q 010630 445 -LNLAIVIPQIVVSMGSGPWDQLFG 468 (505)
Q Consensus 445 -~~~~~~~~~~i~~~~~g~l~~~~g 468 (505)
.+....++..++|.++|.+.|..|
T Consensus 353 ~~~~~~~~g~~~~p~~~g~l~~~~g 377 (394)
T TIGR00883 353 AYNLAGAIFGGFAPYIAAALVAMTG 377 (394)
T ss_pred hhHhHHHHHhhHHHHHHHHHHHHcC
Confidence 455667888999999999999876
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-23 Score=230.08 Aligned_cols=364 Identities=14% Similarity=0.107 Sum_probs=235.5
Q ss_pred hhhHHHHhCCCc--hhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHH--HhcccccccccC
Q 010630 54 LTPYVQELGIPH--AWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLL--IGLSADIGWLLG 129 (505)
Q Consensus 54 ~~~~~~~~g~s~--~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 129 (505)
.+.+..+++.+. ...+++.+++.+...++++++|+++| |+|||++++.+..+..+...+. .....+
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~D----r~grk~~l~~~~~~~~~~~~~~~~~~~~~~------ 102 (1146)
T PRK08633 33 QNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLAD----KFSKNRVIRIVKLFEVGLTLLIVLAYYLGW------ 102 (1146)
T ss_pred HHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcc----cccHHHHHHHHHHHHHHHHHHHHHHHHHcc------
Confidence 334445566543 45788899999999999999999999 9999998876443322222221 112222
Q ss_pred CCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhhcccccccccccccc
Q 010630 130 DRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFT 209 (505)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l~~~~~~~~~~~~~ 209 (505)
++.+++.+++.|++.+...++..++++|++|+++|+ +++++.....++|.++|+.+++++....
T Consensus 103 ---------~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~--~~~~~~~~~~~ig~~lg~~l~~~l~~~~----- 166 (1146)
T PRK08633 103 ---------FWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLS--RANGLLEAFTIVAILAGTALFSFLFESV----- 166 (1146)
T ss_pred ---------HHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccch--hhhhHHHHHHHHHHHHHHHHHHHHHHhh-----
Confidence 378888999999999999999999999999999999 9999999999999999999988732210
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCCCCCcchHHHHHHHHHHHHhcccHHHHH
Q 010630 210 LTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWI 289 (505)
Q Consensus 210 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (505)
... ......+|.+.+.+..+...+..++..+.+||.+....... + ++. ....+...+.+...+++ +.++.
T Consensus 167 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~---~~~~~~~~~~~~~l~~~--~~~~~ 236 (1146)
T PRK08633 167 NGN-TPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPAAAPEVF---D-KKK---YLFPKLLWRNLKLLRSD--RVLWL 236 (1146)
T ss_pred ccc-cccccccchHHHHHHHHHHHHHHHHHHhcCcCCCCCCcccc---c-ccc---cccHHHHHHHHHHHhcC--cHHHH
Confidence 000 00000134444444443444444444455666554322110 0 000 01112222334444454 66666
Q ss_pred HHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Q 010630 290 ILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISN 369 (505)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~~r~g~~~~~~~~~ 369 (505)
..+..++.+........+.+.|+.+. ++.+.. . ...+......++.+++.++.+++.||+++++.+.++.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~--------~-~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~ 306 (1146)
T PRK08633 237 AIIGLSYFWFISQLAQANFPAYAKEV-LGLDNT--------F-QVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGA 306 (1146)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHH-hCCCcH--------H-HHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHH
Confidence 65555555555555555667666433 332221 0 1123334456777888999999999999988888877
Q ss_pred HHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhcccccchhHHHHHHHHHH
Q 010630 370 ILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAI 449 (505)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~ 449 (505)
++.+++.+++.+.. +.+..++..++.|++.+...+...+++.+..|+ +.+|+++|+.+++.
T Consensus 307 ~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~--~~rg~~~~~~~~~~ 367 (1146)
T PRK08633 307 LGLALSLFLLPTAP-----------------SLASVLVLFFLFGFSAGLFIVPLNALIQFRAPE--KELGKVLAANNFLQ 367 (1146)
T ss_pred HHHHHHHHHHHHhh-----------------hHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCc--cchhhhhHHHHHHH
Confidence 77777666665542 355666777888888888887888999999998 99999999999999
Q ss_pred HHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHH
Q 010630 450 VIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISAL 483 (505)
Q Consensus 450 ~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~ 483 (505)
.++..+++.+++.+.. .+......+.+.+.+.+
T Consensus 368 ~lg~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~ 400 (1146)
T PRK08633 368 NVGMLLFLALTTLFSG-LGLSPAGLFYLIALVTL 400 (1146)
T ss_pred HHHHHHHHHHHHHHHH-hccCHHHHHHHHHHHHH
Confidence 9999888887776654 33222333444444333
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-23 Score=204.77 Aligned_cols=412 Identities=12% Similarity=0.075 Sum_probs=252.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCC-CCCcchhHHH
Q 010630 29 PLRKLLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSR-FGRRRPFIVC 106 (505)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r-~Grr~~~~~~ 106 (505)
.++.++.+....+...++++....+++.|+ +++|.+..+.+++.+.+.....+..+++|+++| | +||||.++.+
T Consensus 12 ~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laD----r~~G~r~~~~~g 87 (489)
T PRK10207 12 QPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGD----HLLGTKRTIVLG 87 (489)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhh----hccchHHHHHHH
Confidence 345566666666777788888888888886 679999999999999999888888999999999 8 9999999885
Q ss_pred HHHHHHHHHHHHhcccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHH
Q 010630 107 GAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFM 186 (505)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 186 (505)
..+ ..++.+.++++++. ...+.+++.+++++.+...+...+++.|.+|+++|..++++++.....
T Consensus 88 ~~~-~~~g~~~~~~~~~~--------------~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~ 152 (489)
T PRK10207 88 AIV-LAIGYFMTGMSLLK--------------PDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSI 152 (489)
T ss_pred HHH-HHHHHHHHHHhccc--------------hhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHH
Confidence 544 55555555554432 023446788889999999999999999999887532116899999999
Q ss_pred HHHHHHHhhccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCCCC--
Q 010630 187 AVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQ-- 264 (505)
Q Consensus 187 ~~g~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~-- 264 (505)
++|..+|+.+++++.... +|++.|++.++ ..+..++.+...++..++..++.+++..+....
T Consensus 153 nig~~~g~~l~g~l~~~~---------------gw~~~F~i~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l 216 (489)
T PRK10207 153 NIGSLISLSLAPVIADKF---------------GYSVTYNLCGA-GLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLL 216 (489)
T ss_pred HHHHHHHHHHHHHHHHhh---------------ChHHHHHHHHH-HHHHHHHHHHHcchhhcccCCCCCccchhhhhHHH
Confidence 999999999988854333 89999998654 333334344444433221110100000000000
Q ss_pred ----------------CcchHHHH-------------HHHHH---HHHhcccHHHHHHH--HHHHHHHHhhHhHHhhhHH
Q 010630 265 ----------------SSDVHEAF-------------LWELF---GTFRYFSGTIWIIL--IVTALTWLGWFPFLLFDTD 310 (505)
Q Consensus 265 ----------------~~~~~~~~-------------~~~~~---~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 310 (505)
........ ..+.. +..|+ |.+.... +...+.+..+.......+.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~~~~~~r~--r~~~~~~l~~~~~~f~~~~~q~~~~l~l 294 (489)
T PRK10207 217 VLLGSVVMIFVCAWLMHNVEVANLVLIVLSIVVTIIFFREAFKLDKTGRN--KMFVAFVLMLEAVVFYILYAQMPTSLNF 294 (489)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH--HHHHHHHHHHHHHHHHHHHHHcccHHHH
Confidence 00000000 00000 11222 2222211 1122333333333333444
Q ss_pred HHHHHHhCCCCCCcccccccchh-hHHHHHHHHHHHHHHHHHHHHHHHHhcchH-------HHHHHHHHHHHHHHHHHHH
Q 010630 311 WMGREIYGGEPNEGQNYATGVRM-GALGLMLNSVVLGITSVLMEKLCRKWGAGF-------IWGISNILMALCFLAMLIL 382 (505)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~g~l~~r~g~~~-------~~~~~~~~~~~~~~~~~~~ 382 (505)
+..+...+ + . .|... ......++.+..++.+++.+++.||+++|+ .+.+|.++.+++++.....
T Consensus 295 ~~~~~~~~-~--~-----~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~ 366 (489)
T PRK10207 295 FAINNVHH-E--I-----LGFSINPVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAA 366 (489)
T ss_pred HHHHhccc-c--c-----cceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 44322211 0 0 12121 112222344556677788899999999886 3667777777776544322
Q ss_pred HHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhh
Q 010630 383 YYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGP 462 (505)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~ 462 (505)
.....+. ....+.++.+...++.|++.+...+...+++.+..|+ +.+|.++|++++...+|+.++..++..
T Consensus 367 ~~~~~~~-------~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~--~~~g~~~g~~~l~~~ig~~lg~~l~~~ 437 (489)
T PRK10207 367 GMWFADA-------QGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQ--HLMGFILGMWFLTQAAAFLLGGYVATF 437 (489)
T ss_pred HHhhcCC-------CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1000000 0111456677888899999999999999999999999 999999999999999999998888765
Q ss_pred hHhhh------c--CCCchHHHHHHHHHHHHHHHHHHhcc
Q 010630 463 WDQLF------G--GGNSPAFAVGGISALAGGLIAILAIP 494 (505)
Q Consensus 463 l~~~~------g--~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (505)
....- . ..+...|...++..+++.++.+...|
T Consensus 438 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~~~~ 477 (489)
T PRK10207 438 TAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMALMVP 477 (489)
T ss_pred hccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 42100 0 01234566566555555555554443
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.9e-24 Score=201.84 Aligned_cols=333 Identities=13% Similarity=0.104 Sum_probs=225.8
Q ss_pred HHHHHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHHhcccccccc
Q 010630 48 ALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWL 127 (505)
Q Consensus 48 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (505)
....+.+|.+.+++|.|..+.+++.+++.++..+++++.|+++| |+||||.++... .....+.+.. ..++.
T Consensus 17 ~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d----r~g~r~~~~~~~-~~~~~~~~~~-~~~~~--- 87 (355)
T TIGR00896 17 TSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLAR----RFGEERSVAAGL-LLIAAGILIR-SAPGT--- 87 (355)
T ss_pred ccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHH----HhCchHHHHHHH-HHHHHHHHHH-HhccH---
Confidence 34456888899999999999999999999999999999999999 999999887744 3344444444 33443
Q ss_pred cCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhhcccccccccccc
Q 010630 128 LGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILP 207 (505)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l~~~~~~~~~~~ 207 (505)
+.+++.+++.|++.+...+...+.+.|.+| ++|+ +++++.+...++|..+++.+++.+....
T Consensus 88 ------------~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~g~~i~~~~~~~l~~~~--- 149 (355)
T TIGR00896 88 ------------ALLFAGTALIGVGIAIINVLLPSLIKRDFP-QRVG--LMTGLYSMALMGGAALAAAATVPLAQHS--- 149 (355)
T ss_pred ------------HHHHHHHHHHHHHHHHHhccchHHHHHhCc-chhh--HHHHHHHHHHHHHHHHHHHHHHHHHHhh---
Confidence 666788889999988887778888899886 5788 9999999999999999888766522110
Q ss_pred ccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCCCCCcchHHHHHHHHHHHHhcccHHH
Q 010630 208 FTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTI 287 (505)
Q Consensus 208 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (505)
..+||+.|...+++.++... ...||.+++++++. +.+ . ...++.+|+ |.+
T Consensus 150 ----------~~~w~~~f~~~~~~~~~~~~---~~~~~~~~~~~~~~------~~~-----~----~~~~~~~~~--~~~ 199 (355)
T TIGR00896 150 ----------GGHWQQALAWWALPALLALL---AWIPQVRRRVAANQ------TTT-----R----LTPVRIWRS--PLA 199 (355)
T ss_pred ----------hhhHHHHHHHHHHHHHHHHH---HHhhhhccccCCCC------CCC-----C----CCCchhhcC--HhH
Confidence 01488888776654433322 22344322111110 000 0 011233455 666
Q ss_pred HHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHH
Q 010630 288 WIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKW-GAGFIWG 366 (505)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~~r~-g~~~~~~ 366 (505)
+...+...+..........+.+.|+.+ .+.+.. ..........++.+++.++.+++.||+ +||+.+.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~lp~~~~~--~g~~~~----------~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~ 267 (355)
T TIGR00896 200 WQVTVFFGLQSGLYYSLIGWLPAILIS--HGASAA----------TAGSLLALMQLAQAASALLIPALARRVKDQRGIVA 267 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCHH----------HHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHH
Confidence 665555555555556666677777742 232221 112333446777889999999999999 5566666
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhcccccchhHHHHHHH
Q 010630 367 ISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLN 446 (505)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~ 446 (505)
.+..+.+++...+.+.. . ... .....+.|++.+...+...+.+.+..++ ++++|...++.+
T Consensus 268 ~~~~~~~~~~~~~~~~~--------------~--~~~--~~~~~l~g~~~g~~~~~~~~~~~~~~~~-~~~~g~~~~~~~ 328 (355)
T TIGR00896 268 VLAVLQLVGLCGLLFAP--------------M--HGL--WAWALVLGLGQGGAFPLALTLIGLRSRQ-AAQAAALSAMAQ 328 (355)
T ss_pred HHHHHHHHHHHHHHHhh--------------h--hHH--HHHHHHHHHhhhhHhHHHHHHHHHhccC-HHHHHHHHHHHH
Confidence 77777766666555442 1 111 1235667888888777666666655443 167789999999
Q ss_pred HHHHHHHHHHHhhhhhhHhhhc
Q 010630 447 LAIVIPQIVVSMGSGPWDQLFG 468 (505)
Q Consensus 447 ~~~~~~~~i~~~~~g~l~~~~g 468 (505)
....++..++|.+.|++.|+.|
T Consensus 329 ~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 329 SIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999986
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.7e-25 Score=203.17 Aligned_cols=370 Identities=13% Similarity=0.050 Sum_probs=242.1
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHH
Q 010630 28 VPLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCG 107 (505)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~ 107 (505)
.+.+.+..+..........-+......+...+.+|++++..|++.+++.+...+++|+.|+++| |+.||+++.+ +
T Consensus 30 ~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLad----ryNR~~v~~v-G 104 (493)
T KOG1330|consen 30 SPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLAD----RYNRKRVIAV-G 104 (493)
T ss_pred cchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHh----hcCcceEEee-H
Confidence 3344455555555555555566666667777889999999999999999999999999999999 9999988877 5
Q ss_pred HHHHHHHHHHHhcccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHH
Q 010630 108 AISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMA 187 (505)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 187 (505)
..+...+.+...++.++ |.+++.|.+.|+|.+.+.+.++++++|.+|+++|+ +.+++.++...
T Consensus 105 ~~iW~~Av~~~~fs~~F---------------wq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs--~~~~ify~~ip 167 (493)
T KOG1330|consen 105 IFIWTLAVFASGFSNHF---------------WQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRS--RVLGIFYFAIP 167 (493)
T ss_pred HHHHHHHHHHHHHHHHH---------------HHHHHHHHHhccchhhhcccchhHhhhcCcchhhh--HHHHHhhhhcc
Confidence 55566666666666554 99999999999999999999999999999999999 99999999999
Q ss_pred HHHHHHhhccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCCCCCcc
Q 010630 188 VGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSD 267 (505)
Q Consensus 188 ~g~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 267 (505)
+|..+|...+..+.... .+|||.|...+++.+++.++..++++|+++...++.+.+.+. .+
T Consensus 168 vGsglG~vvgs~va~~~--------------~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~~~~~~~-----~~ 228 (493)
T KOG1330|consen 168 VGSGLGYVVGSVVASLT--------------FWWRWAFRGSAVLGVIVGLLVFLFVREPERGARDEVDGENKM-----VK 228 (493)
T ss_pred cccceeEEeeeeeccCc--------------cceEEEEEeehHHHHHHHHHHHhhccCcccccccccccCCcC-----CC
Confidence 99999998887743322 259999999999999999999999999876433322211111 12
Q ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhHhHHhhhHHHHHH--HHhCCCCCCcccccccchhhHHHHHHHHHHH
Q 010630 268 VHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGR--EIYGGEPNEGQNYATGVRMGALGLMLNSVVL 345 (505)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (505)
+....+++++...++ +.+..-.+.....++....+..+.|.+... +.-+.+. ..+.+...+...++
T Consensus 229 ~~ts~~kDl~~l~~~--~v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~----------~~~~ifg~vt~~~G 296 (493)
T KOG1330|consen 229 PFTSVWKDLKVLAKI--KVFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYELIGFDH----------NATLIFGGVTCAGG 296 (493)
T ss_pred CccchHHHHHHHHcc--CceeeehHHHHHHHHhccccchhhhhHHHHHHHHhCCcc----------ccchhhhhHHHhhc
Confidence 234566777777775 443333333333333222333333333321 1111111 11223334456667
Q ss_pred HHHHHHHHHHHHHhcch----HHHHH-------HHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhh
Q 010630 346 GITSVLMEKLCRKWGAG----FIWGI-------SNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGG 414 (505)
Q Consensus 346 ~i~~~~~g~l~~r~g~~----~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 414 (505)
.+|.+++|.++||+.++ ..... +..+.+..+.+.... +. ......+.++++|.
T Consensus 297 ~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~--------------~~--~s~~~~~il~~~g~ 360 (493)
T KOG1330|consen 297 SLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAF--------------TS--SSMIFGLILFLVGE 360 (493)
T ss_pred hhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhh--------------hh--HHHHHHHHHHHHHH
Confidence 78888888888885321 11111 111111111111111 11 12223334444454
Q ss_pred HHHHHh-hchhHhHhhhhcccccchhHHHHHHHHHHHH-HHHHHHhhhhhhHhhhc
Q 010630 415 PLAITY-SVPYALVSIRTESLGLGQGLSLGVLNLAIVI-PQIVVSMGSGPWDQLFG 468 (505)
Q Consensus 415 ~~~~~~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~-~~~i~~~~~g~l~~~~g 468 (505)
...... ....-+..+++|+ ++|.+++++...+..+ |.+-+|.+.|.+.|..-
T Consensus 361 ~~~~~~~a~n~~i~l~vV~p--~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l~ 414 (493)
T KOG1330|consen 361 TISWFNWATNNPIFLEVVPP--SRRTTAYALDTVFEHIFGDAASPYIVGILSDKLR 414 (493)
T ss_pred HHHhcccccccceeeEecCc--ccccHHHHHHHHHHHHhccCCCcceehhHHHHhh
Confidence 444333 3344567788898 9999999987766654 44556669999999764
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-22 Score=197.47 Aligned_cols=374 Identities=14% Similarity=0.063 Sum_probs=256.6
Q ss_pred hhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHHhcccccccccCCCCCCcchhHHHHHHH
Q 010630 66 AWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFG 145 (505)
Q Consensus 66 ~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (505)
+..++..++..+..++..|+.|.++| +-|+||.++.......+++...+.+.+.- ..+...+.
T Consensus 70 s~~~~~~sis~l~~all~P~lGa~aD----~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~-------------~~~~~~~l 132 (477)
T PF11700_consen 70 SLWLYANSISGLLQALLAPFLGAIAD----YGGRRKRFLLIFTLLGVLATALLWFVSPG-------------QWWLALVL 132 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc----ccccchHHHHHHHHHHHHHHHHHHHhCcc-------------hHHHHHHH
Confidence 34567788999999999999999999 88888888776666666666555543211 11444455
Q ss_pred HHHHHhhhhcccchhhhHhhhccccccc--------------------------chhhHhHHHHHHHHHHHHHHhhcccc
Q 010630 146 FWILDVANNMTQGPCRALLADLTGKDHR--------------------------RTRVANAYFSLFMAVGNILGYATGSF 199 (505)
Q Consensus 146 ~~l~g~~~~~~~~~~~~~~~~~~~~~~r--------------------------~~~~~~~~~~~~~~~g~~ig~~l~~~ 199 (505)
.++..++.+......+++++|+.+++++ + +..+.-.....+|.++.-.+.-.
T Consensus 133 ~iia~v~~~~~~vfyna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~vS~~G~a~Gy~G~~v~l~i~l~ 210 (477)
T PF11700_consen 133 FIIANVGYEASNVFYNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRG--RVSGLGWALGYIGGLVALLISLL 210 (477)
T ss_pred HHHHHHHHHHHHHHHHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhc--hhHHHHHHHHHHHHHHHHHHHHH
Confidence 5556678888888999999999999988 7 78777777777777766554332
Q ss_pred ccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCCCCCcchHHHHHHHHHHH
Q 010630 200 SGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGT 279 (505)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (505)
.... .... .....+.|..+.+.++..++..+..++++||+|+.+..+.. ....+..++++++.
T Consensus 211 ~~~~-----~~~~--~~~~~~~r~~~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~----------~~~~~~g~~~l~~t 273 (477)
T PF11700_consen 211 LVIS-----PGST--ASNTWAIRVAFLIVALWWLVFSIPLFLWLPDRPGPRPLPSG----------SSYLRFGFKRLWRT 273 (477)
T ss_pred HHHc-----CCCc--cccchhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcc----------hhHHHHHHHHHHHH
Confidence 1000 0000 11123578999999999999999999999998764222100 01123344555444
Q ss_pred Hhcc--cHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010630 280 FRYF--SGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCR 357 (505)
Q Consensus 280 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~~ 357 (505)
+|+. .|....+++..++..-+...+..+...|..+ .++.+..+ -....++..+.+++++++++++.|
T Consensus 274 ~k~~~~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~-~lg~s~~~----------l~~~~l~~~i~a~~Ga~~~g~l~~ 342 (477)
T PF11700_consen 274 FKEIRKLRQLFLFLIAYFLYSDGVNTIISFAGIYATE-VLGMSTTQ----------LIVFGLVVQIVAIIGALLFGWLQD 342 (477)
T ss_pred HHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcCHHH----------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4432 2667777777777777777777777766643 33333222 122333467888999999999999
Q ss_pred Hhcch--HHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhcccc
Q 010630 358 KWGAG--FIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLG 435 (505)
Q Consensus 358 r~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 435 (505)
|+|.| +++..+.++..+..+.-.+ ...... ....+.+.+++..++.|+..|...+...++.+++.|+
T Consensus 343 r~g~k~~~~l~~~l~~~~~i~~~g~~-G~~~~~--------~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~-- 411 (477)
T PF11700_consen 343 RFGPKTKRTLLISLILWIIIPLYGLF-GFWPSF--------FGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPP-- 411 (477)
T ss_pred HhCCchhHHHHHHHHHHHHHHHHHHH-Hhhhcc--------cCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCC--
Confidence 99998 7777666555332222221 000000 1112567788888999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHhccCCCCC
Q 010630 436 LGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPRSSAQ 499 (505)
Q Consensus 436 ~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (505)
++.+..+|++++......++||++.|.+.+.+| +....+....++.+++.++. ...+.+|.+
T Consensus 412 g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg-~~r~g~~~l~~lf~~gl~ll-~~v~~~~g~ 473 (477)
T PF11700_consen 412 GREAEFFGLYAITGKASSWLGPLLFGLITDATG-SQRYGFLFLLVLFLIGLILL-FFVDVEKGR 473 (477)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CchhHHHHHHHHHHHHHHHH-hhccchhhh
Confidence 888999999999999999999999999999985 46677777777777777555 344444333
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.1e-24 Score=232.36 Aligned_cols=351 Identities=15% Similarity=0.071 Sum_probs=232.3
Q ss_pred hhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHH--HHHHHHHHHHHHHhcccccccccCCCCCCcchhHHHHH
Q 010630 66 AWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIV--CGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFV 143 (505)
Q Consensus 66 ~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (505)
...++..+++.+..++.+|++|+++| |+|||+++.. ...+............+++ +.++
T Consensus 52 ~~~~l~~~~~~l~~~l~~~~~G~laD----r~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~---------------~~l~ 112 (1140)
T PRK06814 52 ALVTLAGAVFILPFFIFSALAGQLAD----KYDKAKLAKILKFAEIGIAALAIYGFHLNSV---------------PLLF 112 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhh----hccHHHHHHHHHHHHHHHHHHHHHHHHHhhH---------------HHHH
Confidence 45788888999999999999999999 9999987533 1222222221222222343 7888
Q ss_pred HHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhhccccccccccccccccccccccccchhH
Q 010630 144 FGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKS 223 (505)
Q Consensus 144 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (505)
+.++++|++.+...+...+++.|++++++|+ +++++.++..++|.++|+.+++++.... +|++
T Consensus 113 ~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~--~a~~~~~~~~~ig~~igp~l~g~l~~~~---------------~~~~ 175 (1140)
T PRK06814 113 AALFLMGIHSALFGPIKYSILPDHLNKDELL--GANALVEAGTFIAILLGTIIGGLATISG---------------NFVI 175 (1140)
T ss_pred HHHHHHHHHHHhhchHHHHhhHhhcCccccc--hhhHHHHHHHHHHHHHHHHHHHHHHhcc---------------ccHH
Confidence 9999999999999999999999999999999 9999999999999999999999843322 8888
Q ss_pred HHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCCCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhHh
Q 010630 224 AFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFP 303 (505)
Q Consensus 224 ~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (505)
.|...+ +..+..++..+.+++++........ .. ...++....+....++ +.++...+..++.++....
T Consensus 176 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~------~~---~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 243 (1140)
T PRK06814 176 LVALLM-GIAVLGWLASLFIPKTGNAAPDLKI------DR---NIIRSTITLLKYAKAD--KRIWLAILGISWFWLVGAV 243 (1140)
T ss_pred HHHHHH-HHHHHHHHHHhhCCCCCCCCCCCee------cc---chHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHHH
Confidence 884443 4444444455556655432111100 00 0011222234444455 7788777777777766666
Q ss_pred HHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Q 010630 304 FLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILY 383 (505)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~ 383 (505)
+..+.+.|+.+ .++.++. ...+......++.++++++.+++.||..+++.+..+.++.+++.+.+.+..
T Consensus 244 ~~~~~p~~~~~-~~g~~~~----------~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 312 (1140)
T PRK06814 244 VLSQLPLLAKE-TLGGDEN----------VATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFAS 312 (1140)
T ss_pred HHHHhHHHHHH-HcCCchH----------HHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcc
Confidence 76778888743 3332221 112334456778889999999999888776666555555444443333210
Q ss_pred HHhhhccccCCCC------CCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHH
Q 010630 384 YVAIHMDYRGHDL------PPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVS 457 (505)
Q Consensus 384 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~ 457 (505)
.+....+..+ ....+.+.+++..+++|++.+...+...+++++.+|+ +.+|+++|+.++...++..+++
T Consensus 313 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~--~~~G~v~g~~~~~~~~~~~ig~ 387 (1140)
T PRK06814 313 ---SSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANP--AHRARVIAANNVLNAAFMVAGT 387 (1140)
T ss_pred ---cccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCc--ccceeeeHHHHHHHHHHHHHHH
Confidence 0000000000 0001345566777788888888888889999999999 9999999999999999999999
Q ss_pred hhhhhhHhhhcCCCchHHHHHHHH
Q 010630 458 MGSGPWDQLFGGGNSPAFAVGGIS 481 (505)
Q Consensus 458 ~~~g~l~~~~g~~~~~~~~~~~~~ 481 (505)
.+.|.+.+... +....+++.+++
T Consensus 388 ~~~g~l~~~~~-~~~~~~~~~~~~ 410 (1140)
T PRK06814 388 IILALLQALGF-SIPWIILFIALA 410 (1140)
T ss_pred HHHHHHHHhcc-CHHHHHHHHHHH
Confidence 99999886432 233444444433
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.3e-22 Score=190.36 Aligned_cols=385 Identities=14% Similarity=0.181 Sum_probs=246.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHH
Q 010630 36 VASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAV 115 (505)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~ 115 (505)
++...+...+.++...++++.|+++.|+|..|+|.+.++..+...+.++++|.++| |.++++..+....+...+..
T Consensus 7 Ls~~~f~~f~~~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aD----r~~~~~~~l~~~~l~~~~~~ 82 (400)
T PF03825_consen 7 LSLMYFLYFFAYGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIAD----RFGSAKRILALLSLLSALAL 82 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh----HhhhHHHHHHHHHHHHHHHH
Confidence 44445555567778889999999999999999999999999999999999999999 77655444443444444444
Q ss_pred HHHhcccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhh
Q 010630 116 LLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYA 195 (505)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~ 195 (505)
......+++ +.++....+..+......+...++..+...++++ -.|-.....++|.+++..
T Consensus 83 ~~~~~~~~f---------------~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~~~~----~YG~iRlwGSiGf~~~~~ 143 (400)
T PF03825_consen 83 LLLAFSSSF---------------WWLFVIMLLFSFFFSPTMPLSDSIALSYLGDRGK----DYGRIRLWGSIGFIVAAL 143 (400)
T ss_pred HHHHHhccH---------------HHHHHHHHHHHHHHccHHHHHHHHHHHHcccccC----CCCcchhhhhHHHHHHHH
Confidence 444343333 4455555556666677777778888887764433 334455666666666543
Q ss_pred cc-ccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCCCCCcchHHHHHH
Q 010630 196 TG-SFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLW 274 (505)
Q Consensus 196 l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (505)
.. ...... . + ..+....+++.+....+.... .+.+|+.|.+++++++ .++...+
T Consensus 144 ~~~~~~~~~-----~-----~--~~~~~~~~~i~~~~~~ll~~~-~l~lp~~~~~~~~~~~------------~~~~~~~ 198 (400)
T PF03825_consen 144 AFGGLLGGY-----L-----G--ISGTSLIFYIAAILSLLLAGF-ALFLPKTPPKRSAKES------------VKKLLGL 198 (400)
T ss_pred HHHHHHHhh-----h-----c--cccccHHHHHHHHHHHHHHHH-HHhCCCCccccccCCC------------cccccch
Confidence 21 110000 0 0 012233455555444333322 3345665522211100 0112233
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHH
Q 010630 275 ELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEK 354 (505)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 354 (505)
+.++.+|+ |++..+.+..++.......+..|.+.|+.+. ++ +.. ........+..+..++.-...++
T Consensus 199 ~~~~llk~--~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~--gg-------~~~--~~~g~~~~l~~~aEi~~f~~~~~ 265 (400)
T PF03825_consen 199 DALKLLKN--PRFLVFLLAAFLIGISHAAYYTFFSIYLQEL--GG-------YSG--STIGILWALGVVAEIPFFFFSGR 265 (400)
T ss_pred HHHHHhcC--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--cc-------chh--hHHHHHHHHHHHHHHHHHHHHHH
Confidence 55678888 7888888888888888888888888887432 10 100 11112223456677788889999
Q ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhccc
Q 010630 355 LCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESL 434 (505)
Q Consensus 355 l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 434 (505)
+.+|+|.++++.++.+..++-..++.... + |........++...+.|+.++........++.+.+|+
T Consensus 266 ~~~r~g~~~ll~~a~~~~~vR~~l~a~~~----~--------~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~- 332 (400)
T PF03825_consen 266 FLKRFGIKWLLLLALVAYAVRWLLYAYFS----D--------PWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPP- 332 (400)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHHhc----C--------CcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCc-
Confidence 99999999999999999999999888772 0 1100111122224568999999999999999999999
Q ss_pred ccchhHHHHHHHHH-HHHHHHHHHhhhhhhHhhhcCCCc----hHHHHHHHHHHHHHHHHHHhccC
Q 010630 435 GLGQGLSLGVLNLA-IVIPQIVVSMGSGPWDQLFGGGNS----PAFAVGGISALAGGLIAILAIPR 495 (505)
Q Consensus 435 ~~~~g~~~g~~~~~-~~~~~~i~~~~~g~l~~~~g~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 495 (505)
+.+++++++++.. ..+|..+|..++|++.|+.|.... ..+.+.+++.++..++...+.|+
T Consensus 333 -~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~ 397 (400)
T PF03825_consen 333 -ELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKP 397 (400)
T ss_pred -cchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 9999999998875 579999999999999999873321 22444444444444444444443
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.9e-24 Score=188.67 Aligned_cols=346 Identities=13% Similarity=0.151 Sum_probs=244.4
Q ss_pred HHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHHhcccccccccCCCCCCcchh
Q 010630 59 QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRA 138 (505)
Q Consensus 59 ~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (505)
.+.+-+..++|++.+...+.+.+.+|+.|.+.| |+|+|.++++ +...+..+.+++++..++
T Consensus 99 ~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~----~iGy~ipm~~-Gl~vmf~sTilFafg~sy-------------- 159 (464)
T KOG3764|consen 99 ISLDRENTQIGLLFASKALVQLLVNPFFGNLID----RIGYKIPMVA-GLFVMFLSTILFAFGNSY-------------- 159 (464)
T ss_pred cCccccccchhHHHHHHHHHHHHhcccchhhHH----HhccccHHHH-HHHHHHHHHHHHHHcchh--------------
Confidence 346677889999999999999999999999999 9999988877 777778888888888887
Q ss_pred HHHHHHHHHHHHhhhhcccchhhhHhhhcccccc-cchhhHhHHHHHHHHHHHHHHhhcccccccccccccccccccccc
Q 010630 139 IAVFVFGFWILDVANNMTQGPCRALLADLTGKDH-RRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVD 217 (505)
Q Consensus 139 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~~~~~~g~~ig~~l~~~~~~~~~~~~~~~~~~~~~ 217 (505)
+++++.|.++|+|.++..+...++++|.+|+++ |+ +++|+...+.++|.++||.+|+++....
T Consensus 160 -~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~--~vmGialgfislG~lvgPpfGGilYe~~------------- 223 (464)
T KOG3764|consen 160 -PMLFVARSLQGVGSAFADTSGLAMLADVFPEDNERG--SVMGIALGFISLGVLVGPPFGGILYEFA------------- 223 (464)
T ss_pred -HHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhh--HHHHHHHHHHhccceecCCcccchHhhc-------------
Confidence 789999999999999999999999999999877 47 8999999999999999999999954433
Q ss_pred ccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCCCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q 010630 218 CANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALT 297 (505)
Q Consensus 218 ~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (505)
|.+..|.+.++++++-..+.++.++.++.++++.. +. ..+++.+++ +..+.........
T Consensus 224 --Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~~~~~--------------~~---~~~~~Ll~d--P~I~~~agai~~~ 282 (464)
T KOG3764|consen 224 --GKSAPFLVLAIVLLLDGALQLLVIEPTEMDPDSTE--------------QG---TPMWSLLMD--PYILLIAGAITFS 282 (464)
T ss_pred --CCcCcHHHHHHHHHHHHHHHHheeCccccCccccc--------------cC---ccHHHHHhC--chHhhhhcchhhc
Confidence 88899999999999988888877765544332110 01 134556666 6666554444444
Q ss_pred HHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH--HHHHHHHHHH
Q 010630 298 WLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIW--GISNILMALC 375 (505)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~~r~g~~~~~--~~~~~~~~~~ 375 (505)
..+......-.+.|+.+... + .+++.| +..+..++...++..+.|.+.||+++.+.+ ..+.+..++.
T Consensus 283 n~~lafLePtlslwm~e~m~--~----p~w~~G-----~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~ 351 (464)
T KOG3764|consen 283 NSSLAFLEPTLSLWMLETMF--T----PGWEVG-----LAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVS 351 (464)
T ss_pred cchHHHhCcccHHHHHHhcc--C----CCccee-----eeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHH
Confidence 44444444445666654432 1 122222 223335666788889999999999944433 3455555555
Q ss_pred HHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhcccc----cchhHHHHHHHHHHHH
Q 010630 376 FLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLG----LGQGLSLGVLNLAIVI 451 (505)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~g~~~g~~~~~~~~ 451 (505)
.....+.+ +...+++..+..+++.+.............++..+ +..|.++++.....++
T Consensus 352 ~~~iP~~~-----------------~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sl 414 (464)
T KOG3764|consen 352 SGPIPFAT-----------------SIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSL 414 (464)
T ss_pred hchhHhhh-----------------hHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHH
Confidence 55555553 34444444444555444444433334444444311 2568999999999999
Q ss_pred HHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHH
Q 010630 452 PQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAI 490 (505)
Q Consensus 452 ~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 490 (505)
+.++||.++|.+.+..| +.+...+.++..++-.-++.
T Consensus 415 a~a~GP~~gg~iv~~iG--F~wl~~iig~~n~iyapvl~ 451 (464)
T KOG3764|consen 415 AYAIGPTFGGSLVEAIG--FEWLMTIIGILNLIYAPVLL 451 (464)
T ss_pred hhhccccccchheeehh--HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987 66665555555554443333
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.9e-24 Score=203.26 Aligned_cols=362 Identities=16% Similarity=0.146 Sum_probs=253.7
Q ss_pred HhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHHhcccccccccCCCCCCcchhH
Q 010630 60 ELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAI 139 (505)
Q Consensus 60 ~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (505)
+++.+..+.+++.+....++.+++.+.|++.| |+|-|+++...+ ++..+..++...+.+.+ +
T Consensus 67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~----k~G~r~v~~~~~-~~sa~~t~l~P~aa~~~-------------~ 128 (466)
T KOG2532|consen 67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLAD----KFGARRVFFISG-LISALLTLLTPLAASIG-------------F 128 (466)
T ss_pred eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHH----HcCchHHHHHHH-HHHHHHHHHHHHHHHhc-------------c
Confidence 47788999999999999999999999999999 999999988844 44555666665554431 2
Q ss_pred HHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhhcccccccccccccccccccccccc
Q 010630 140 AVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCA 219 (505)
Q Consensus 140 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~ 219 (505)
+.+++.|+++|++.+..++....+.++|.|++||+ +..++...+..+|.+++..++|++.... .
T Consensus 129 ~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~Ers--~~~ail~~g~q~g~v~~mp~sg~lc~s~--------------~ 192 (466)
T KOG2532|consen 129 YLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNERS--TFIAILTAGSQLGTIITMPVSGLLCESS--------------L 192 (466)
T ss_pred hhhHHHHHHhHHHHhHHHhhhhceeeeECCHHHHH--HHHHHHHHHHHHHHHHHHHhHHHHhccC--------------C
Confidence 46689999999999999999999999999999999 9999999999999999998888744321 2
Q ss_pred chhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcc---cCCCCCcch--HHHHHHHHHHHHhcccHHHHHHHHHH
Q 010630 220 NLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSE---EGHEQSSDV--HEAFLWELFGTFRYFSGTIWIILIVT 294 (505)
Q Consensus 220 ~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (505)
||+..|++.+++.++..++.+++..|+|.+.+.-.++|.+ +.+.++..+ .+.+ .++.+++ +.+|...+..
T Consensus 193 GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h~~is~~El~~I~~~k~~~~~~~~~~vP---~~~i~ts--~~vwai~~~~ 267 (466)
T KOG2532|consen 193 GWPSIFYVFGIVGLIWFILWFLFYSDSPSKHPNISEKELKYIEKGKSEAHVKKKPPVP---YKAILTS--PPVWAIWISA 267 (466)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHhcccccccCCCCCCC---HHHHHcC--HHHHHHHHHH
Confidence 9999999999999999888888888877653322111110 000000000 1222 3455566 8999999999
Q ss_pred HHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcch--------HH-H
Q 010630 295 ALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAG--------FI-W 365 (505)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~~r~g~~--------~~-~ 365 (505)
+....+...+..|.|.|+. ++++.+..+. .+...+-.+...+..++.|.++||+.+| |. -
T Consensus 268 f~~~~~~~~l~~y~PtY~~-~VL~f~v~~~----------G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn 336 (466)
T KOG2532|consen 268 FGGNWGFYLLLTYLPTYLK-EVLGFDVRET----------GFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFN 336 (466)
T ss_pred HHHHHHHHHHHHHhhHHHH-HHhCCChhhh----------hHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHH
Confidence 9999999999999999995 5556555442 2323334566778888999999988552 22 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHH---HHHHHHhhHHHHHhhchhHhHhhhhcccccchhHHH
Q 010630 366 GISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAAL---IIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSL 442 (505)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 442 (505)
.++....++.++.+.+.. .......+. +...+.|+..+..+ .-..+..| ++.+..+
T Consensus 337 ~i~~~~~ai~l~~l~~~~--------------~~~~~~a~~~l~~~~~~~g~~~~Gf~----~~~~~~ap---q~a~~l~ 395 (466)
T KOG2532|consen 337 TIAFGGPAVFLLVLAFTS--------------DEHRLLAVILLTIAIGLSGFNISGFY----KNHQDIAP---QHAGFVM 395 (466)
T ss_pred hHHHHHHHHHHHeeeecC--------------CCcchHHHHHHHHHHHHcccchhhhH----hhhhhccc---hHHHHHH
Confidence 346666666666666652 111111111 11222222222221 11222233 8999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHh-hhcCCCchHHHHHHHHHHHHHHHHHHh
Q 010630 443 GVLNLAIVIPQIVVSMGSGPWDQ-LFGGGNSPAFAVGGISALAGGLIAILA 492 (505)
Q Consensus 443 g~~~~~~~~~~~i~~~~~g~l~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~ 492 (505)
|+.|....++++++|.+.|.+.. ..-......|++.+++.+++.++..++
T Consensus 396 g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 396 GIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFF 446 (466)
T ss_pred HHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence 99999999999999999999984 211124567888888888877554444
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.5e-21 Score=187.55 Aligned_cols=381 Identities=15% Similarity=0.119 Sum_probs=220.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHH-HHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCC-CCCcchhHHHHHH
Q 010630 32 KLLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSR-FGRRRPFIVCGAI 109 (505)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r-~Grr~~~~~~~~~ 109 (505)
.++......+...++++....+++.|+ +++|++..+.+++.+.+........+++|+++| | +|||+.++.+. +
T Consensus 22 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaD----r~~G~r~~~~~g~-~ 96 (500)
T PRK09584 22 AFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGD----KVLGTKRVIMLGA-I 96 (500)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----hccchHHHHHHHH-H
Confidence 355555566667777777888888887 789999999988888777666666678999999 9 59998887744 4
Q ss_pred HHHHHHHHHhcccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHH
Q 010630 110 SIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVG 189 (505)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 189 (505)
...++..++.++++. ...+.+++.+.+++.+...+...+++.|++|+++++.+.++++.....++|
T Consensus 97 ~~~ig~~l~~~~~~~--------------~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG 162 (500)
T PRK09584 97 VLAIGYALVAWSGHD--------------AGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIG 162 (500)
T ss_pred HHHHHHHHHHHhccc--------------HHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHH
Confidence 455555555444321 144556778888999988888899999999865433115788889999999
Q ss_pred HHHHhhccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHh---hhccccCCCCCCCCCCCCcccC-----
Q 010630 190 NILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCIS---ASAAHEVPLGSHDQSAPFSEEG----- 261 (505)
Q Consensus 190 ~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~---~~~~~e~~~~~~~~~~~~~~~~----- 261 (505)
..+|+.+++++.... +|++.|.+.++...+..+.. ...++|.++.++.++.+.....
T Consensus 163 ~~~gp~i~g~l~~~~---------------g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (500)
T PRK09584 163 SFFSMLATPWLAAKY---------------GWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVG 227 (500)
T ss_pred HHHHHHHHHHHHHhh---------------CHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHH
Confidence 999999988743322 89999998775444433222 2223332111111000000000
Q ss_pred ----------CCCCcchHH------------HHHHHHHHHHhcccHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHH-HhC
Q 010630 262 ----------HEQSSDVHE------------AFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGRE-IYG 318 (505)
Q Consensus 262 ----------~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 318 (505)
.....+... ...++..+.-+..+++.+..+. .++....+.......+.++... ..+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~f~~~~~q~~~~l~~~~~~~ 306 (500)
T PRK09584 228 VVALIAIATWLLHNQEIARMALGVVALGIVVIFGKEAFAMKGAARRKMIVAFI-LMLEAIIFFVLYSQMPTSLNFFAIRN 306 (500)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH-HHHHHHHHHHHHHHhccHHHHHHHHh
Confidence 000000000 0000000000000122222221 1122222222222222222210 111
Q ss_pred CCCCCcccccccchhhHHHHHHHHHHHHHHHHHH----HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCC
Q 010630 319 GEPNEGQNYATGVRMGALGLMLNSVVLGITSVLM----EKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGH 394 (505)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~----g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (505)
.+.... ++ ....+.+ ..++.+..++..++. +++.||.+..+.+.++.++.+++++.+.........
T Consensus 307 ~~~~~~-g~--~i~~~~~-~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~------ 376 (500)
T PRK09584 307 VEHSIL-GI--AVEPEQY-QALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFAND------ 376 (500)
T ss_pred cccccc-ce--EECHHHH-HHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCC------
Confidence 111110 11 1112222 223444444554444 555555555677888999999998887666421111
Q ss_pred CCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhh
Q 010630 395 DLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSG 461 (505)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g 461 (505)
...-+.++.+...++.+++.....+...+++.+..|+ +.||+++|++.+...+|..++..+.+
T Consensus 377 --~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~--~~rg~~~g~~~l~~a~g~~~~g~~~~ 439 (500)
T PRK09584 377 --AGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQ--RLMGFIMGSWFLTTAGAALIAGYVAN 439 (500)
T ss_pred --CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0111355778888999999999999999999999999 99999999887776666666555543
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.7e-22 Score=178.45 Aligned_cols=361 Identities=16% Similarity=0.147 Sum_probs=212.5
Q ss_pred hCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHHhcccccccccCCCCCCcchhHH
Q 010630 61 LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIA 140 (505)
Q Consensus 61 ~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (505)
.+.+....|.+.+.+.+...+.+|.+|.++| |+|||.++++ +.+..+++..+.+.+.++ .
T Consensus 63 ~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD----~yGRkpvll~-c~~~va~s~ll~~~S~~F---------------~ 122 (451)
T KOG2615|consen 63 DGASVFYAGFLGSSFSILQFISSPLWGCLSD----RYGRKPVLLA-CLIGVALSYLLWALSRNF---------------A 122 (451)
T ss_pred ccccchhhhhHhhHHHHHHHHhhhhhhhhhh----hhCchHHHHH-HHHHHHHHHHHHHHHHHH---------------H
Confidence 3445677899999999999999999999999 9999977766 667677788888777665 5
Q ss_pred HHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhhccccccccccccccccccccccccc
Q 010630 141 VFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCAN 220 (505)
Q Consensus 141 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~ 220 (505)
.+++.|++.|+..+- ..+..++++|+.++++|+ ++++.++...++|.++||.+|+++.. ++... ..
T Consensus 123 afv~aR~l~Gi~kgn-l~v~rAiisdV~sek~r~--l~ms~v~~a~~lGfilGPmIGgyla~---f~~~~--------g~ 188 (451)
T KOG2615|consen 123 AFVLARFLGGIFKGN-LSVIRAIISDVVSEKYRP--LGMSLVGTAFGLGFILGPMIGGYLAQ---FSSIS--------GS 188 (451)
T ss_pred HHHHHHHhhhhccCc-hHHHHHHHHhhcChhhcc--ceeeeeehhhhcchhhcchhhhHHHh---hHhhh--------cc
Confidence 667779888887764 477899999999999999 99999999999999999999998443 11000 01
Q ss_pred hhHHH--HHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCCCCCcch-HHHHHHHHHHHHhcccH----HHHHHHHH
Q 010630 221 LKSAF--FLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDV-HEAFLWELFGTFRYFSG----TIWIILIV 293 (505)
Q Consensus 221 ~~~~f--~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~~~~~~ 293 (505)
+...+ ++..+....-.....+++||+-+.+++.+++.+..+..+.+.+ .+.....-...+||.|. ..+..+..
T Consensus 189 ~p~alP~~~v~i~a~~~v~~~~~~lpETL~~rk~~~~~~~~~~~~~~~~~~~~~~~~~~v~~lrn~p~~~~i~~~~i~~l 268 (451)
T KOG2615|consen 189 YPFALPCLLVFILAAGDVTFFPWFLPETLPLRKRNDEHSTLQEAADDRLALLKFARIFKVAALRNPPLLDFISVLRIFGL 268 (451)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHhCCccccchhhcccccchhhhhhhhhhhcchhhhhhhhhhcCccccchHHHHHHHHH
Confidence 11111 1111122222345566788885544433111111111100000 11112222344455321 11122222
Q ss_pred HHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhc--chHHHHHHHHH
Q 010630 294 TALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWG--AGFIWGISNIL 371 (505)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~~r~g--~~~~~~~~~~~ 371 (505)
..+.+.-.+..+.+...++.+.-++.++.+. | -.+...++...+......+..+|.+ .+-.+..+..+
T Consensus 269 ~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~-----G-----~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~ 338 (451)
T KOG2615|consen 269 HYFLYLELFSGLENTVLFLTHGRFGYSSMQQ-----G-----KVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLL 338 (451)
T ss_pred HHHHHHHHHHHHHhhHHHhhcCccCCChhhh-----e-----eeeehhhHHHHHHHHhccccccccccchhhHHHHHHHH
Confidence 2222222333333334444333344443332 1 1111122333333333344444433 22233333333
Q ss_pred HHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhcccccchhHHHHHHHHHHHH
Q 010630 372 MALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVI 451 (505)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~ 451 (505)
..-.+++.... + ....+.....+..+......+....++....|+ ++||+.+|+..+...+
T Consensus 339 ~vP~~llls~~--------------~---~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~--~qrG~~~Gi~~Sl~al 399 (451)
T KOG2615|consen 339 IVPAFLLLSLA--------------R---TPVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQ--SQRGTLNGIFRSLGAL 399 (451)
T ss_pred HHHHHHHHhcc--------------c---cchhhhHHHHHHHHHHHHhhHHHHHHHHhcCCc--ccchHHHHHHHHHHHH
Confidence 33333333322 1 235566667777777777778888999999999 9999999999999999
Q ss_pred HHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHH
Q 010630 452 PQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAG 485 (505)
Q Consensus 452 ~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 485 (505)
+.++||+++|.++.+..+ ....+..-+.+.++.
T Consensus 400 aRaiGPlv~g~i~~Ws~~-~~~a~~~~~~L~~~~ 432 (451)
T KOG2615|consen 400 ARAIGPLVSGVIFSWSQG-AQPAYIAWGALLLIP 432 (451)
T ss_pred HHHhhhhhhheeEEEecC-CCceeeehHHHHHHH
Confidence 999999999999987643 233443333333333
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.9e-21 Score=192.72 Aligned_cols=373 Identities=14% Similarity=0.156 Sum_probs=243.5
Q ss_pred hhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHHhcccccccccCCCCCCcchhHHHHHHH
Q 010630 66 AWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFG 145 (505)
Q Consensus 66 ~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (505)
.+.+++.+...++..+++++.|+++| ++|||+.+++ +.+...++.++.+++++. .+++++
T Consensus 89 ~~~s~~~s~~~lga~~g~l~~g~l~d----~~GRk~~l~~-~~~~~~iG~ii~~~a~~~---------------~~l~~G 148 (513)
T KOG0254|consen 89 VRQGLLTSILNLGALVGSLLAGRLGD----RIGRKKTLLL-AVVLFLIGAIIIALAPSW---------------YQLIVG 148 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HhhhHHHHHH-HHHHHHHHHHHHHHhhhH---------------HHHHHH
Confidence 35589999999999999999999999 9999998888 556677777777787776 899999
Q ss_pred HHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhhccccccccccccccccccccccccchhHHH
Q 010630 146 FWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAF 225 (505)
Q Consensus 146 ~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 225 (505)
|++.|+|.|........+++|..|++.|+ ...+..+....+|..++..++...... ..+||..+
T Consensus 149 R~l~G~g~G~~~~~~piy~sEiap~~~RG--~l~~~~~l~~~~Gi~~~~~~~~~~~~~--------------~~~Wr~~~ 212 (513)
T KOG0254|consen 149 RILTGLGVGGASVLAPVYISEIAPAHIRG--TLVSLYQLFITIGILLGYCINYGTSKV--------------YAGWRIPL 212 (513)
T ss_pred HHHhccchhhhhhcchhhHhhcCChhhhH--HHHHHHHHHHHHHHHHHHHHhhhhccC--------------CccHHHHH
Confidence 99999999999999999999999999999 999999999999999986665442110 02899888
Q ss_pred HHHHHHHHHHHHHhhhccccCCCCCCCCCCCCccc---------CCCCCcchH---H-H------------HHHHHHHHH
Q 010630 226 FLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEE---------GHEQSSDVH---E-A------------FLWELFGTF 280 (505)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~---------~~~~~~~~~---~-~------------~~~~~~~~~ 280 (505)
.+..+..++..+. .+++||+|+...+..+.++.+ .+++.+.+. + . .++++.+
T Consensus 213 ~~~~i~~~~~~~~-~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-- 289 (513)
T KOG0254|consen 213 GLALIPAVILALG-MLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWGELFS-- 289 (513)
T ss_pred HHHHHHHHHHHHH-HHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccHHHhcC--
Confidence 8888777777666 888999987654432221100 000000000 0 0 0111111
Q ss_pred hcccHHHHHHHHHHHHHHH-hhHhHHhhhHHHHHHHHhCCCCCCcccccccchhh-HHHHHHHHHHHHHHHHHHHHHHHH
Q 010630 281 RYFSGTIWIILIVTALTWL-GWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMG-ALGLMLNSVVLGITSVLMEKLCRK 358 (505)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~g~l~~r 358 (505)
+..+++....+....+.++ +......|.+..+. .. |.... .......++..+++..+...+.||
T Consensus 290 ~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~-~~-------------g~~~~~~~~~~~~~~v~~~~t~~~~~lvd~ 355 (513)
T KOG0254|consen 290 PKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFK-SA-------------GLKSDTFLASIILGVVNFLGTLVATYLVDR 355 (513)
T ss_pred cchHHHHHHHHHHHHHHHHhCCceEEeehHHHHH-hc-------------CCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112233323333333333 34444445555442 21 11111 234444567777888888999999
Q ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHH-hhHHHHHhhchhHhHhhhhcccccc
Q 010630 359 WGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTIL-GGPLAITYSVPYALVSIRTESLGLG 437 (505)
Q Consensus 359 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~ 437 (505)
+|||++++.+...+.++++++........+.. . ......+..+...+++ ........++++.+.+|.+|. +.
T Consensus 356 ~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~--~~ 428 (513)
T KOG0254|consen 356 FGRRKLLLFGAAGMSICLVILAVVGVFALYYP---N--SSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPL--RL 428 (513)
T ss_pred hccHHHHHHhHHHHHHHHHHHHHHHHHhccCC---C--cccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcH--hH
Confidence 99999999999999999988877653332210 0 0001122233332222 222333346788899999999 99
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHH-HHHHhccCCCCCC
Q 010630 438 QGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGL-IAILAIPRSSAQK 500 (505)
Q Consensus 438 ~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 500 (505)
|++..++......+...+-....-.+.+..+ ....|...+..+.+... ..+.+.||++.+.
T Consensus 429 r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~--~~~~f~~f~~~~~~~~~~fv~~~~pETkg~s 490 (513)
T KOG0254|consen 429 RSKGASLAVAVNWLWNFLISFFFPFITEALG--IGGTFGYFGGICLLSLIIFVFFFVPETKGLT 490 (513)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc--ccchHHHHHHHHHHHHHHHheEEcccCCCCc
Confidence 9999998888888777776666555555532 23345444445555554 6777888887654
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.5e-22 Score=193.57 Aligned_cols=271 Identities=12% Similarity=0.032 Sum_probs=196.5
Q ss_pred HHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHHhcccccccccCCCCCCcchh
Q 010630 59 QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRA 138 (505)
Q Consensus 59 ~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (505)
++++....+.+.+.+++.+++++++++.|.+.| |++-.+.+...+++..+.+++... ..++
T Consensus 74 edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~----r~~ls~~l~~~~~~w~~~~~~~~~-~~s~-------------- 134 (495)
T KOG2533|consen 74 EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGD----RFPLSKGLSVSGILWGLFGFLTAA-VHSF-------------- 134 (495)
T ss_pred cccchhhhhhhhHHHHHHHHHHHHHhhHHHHHH----hCChHHHHHHHHHHHHHHHHHHHH-Hhhh--------------
Confidence 678888899999999999999999999999999 988666666655555555544333 3343
Q ss_pred HHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhhccccccccccccccccccccccc
Q 010630 139 IAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDC 218 (505)
Q Consensus 139 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l~~~~~~~~~~~~~~~~~~~~~~ 218 (505)
+.+++.|++.|+..+..+|....+++.++.+++|+ ..+++.....++|+++|++++..+.... +....
T Consensus 135 -~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g--~r~~~~~a~~~~g~i~ggliA~g~~~~~---------~~~~~ 202 (495)
T KOG2533|consen 135 -PGLIALRFLLGLFESGGWPGVVAILGNWYGKSERG--LRMGIWYASASLGNIFGGLIAYGVFKLN---------GSGGL 202 (495)
T ss_pred -HHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhh--hhHHHHHHhcchhhHHHHHHHHHhhhhc---------CCCCc
Confidence 88889999999999999999999999999999999 9999999999999999998875521100 00112
Q ss_pred cchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCC------cccCCCCCcchHHHHHHHHHHHHhcccHHHHHHHH
Q 010630 219 ANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPF------SEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILI 292 (505)
Q Consensus 219 ~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (505)
.+|||.|++.+++.++..++.++++|+.|.+..-..+++ +.++......+++...+++++.+++ +..|..++
T Consensus 203 ~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d--p~vw~~~l 280 (495)
T KOG2533|consen 203 AGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEKELVVERLRESPSGGIENKFKWKGFKEALKD--PGVWPFSL 280 (495)
T ss_pred CCceeehhHHHHHHHHHHheEEEEecCChhhccccchHHHHHHHHHHHhccCCCcccccCHHHHHHHHhc--hhHHHHHH
Confidence 399999999999999999999999999887432211111 0111111111111445678888888 89999999
Q ss_pred HHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHH----hcchHHHHHH
Q 010630 293 VTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRK----WGAGFIWGIS 368 (505)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~~r----~g~~~~~~~~ 368 (505)
..++.......+..+.|.++.+ ..+.+..+. ........+.++++.++.|.++|| ..+|......
T Consensus 281 ~~~~~~lv~~~~~~~lpl~l~~-~~~~s~~~a----------~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~ 349 (495)
T KOG2533|consen 281 CYFFLKLVNYGFSYWLPLYLKS-NGGYSELQA----------NLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVF 349 (495)
T ss_pred HHHHHhhccccHHHHHHHHHHc-CCCcChHHh----------ccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 9999999888889999998864 211222111 111223567788899999999999 4555555444
Q ss_pred HHHHH
Q 010630 369 NILMA 373 (505)
Q Consensus 369 ~~~~~ 373 (505)
..+..
T Consensus 350 ~~~~~ 354 (495)
T KOG2533|consen 350 LCLYA 354 (495)
T ss_pred HHHHH
Confidence 44433
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.6e-22 Score=193.32 Aligned_cols=369 Identities=15% Similarity=0.109 Sum_probs=269.6
Q ss_pred hhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHHhcccccccccCCCC
Q 010630 53 LLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRG 132 (505)
Q Consensus 53 ~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (505)
+.+.+.++++.+..+++|+.++..-...+..|+.+.+.| |+|.|.+.+. +.++...++++..+++++
T Consensus 68 ~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~----rfg~R~v~i~-G~~v~~~g~~lssF~~~i-------- 134 (509)
T KOG2504|consen 68 LFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCN----RFGCRTVMIA-GGLVAALGLLLSSFATSL-------- 134 (509)
T ss_pred hHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHh----hcCchHHHHH-HHHHHHHHHHHHHHHhhH--------
Confidence 456677899999999999999999999999999999999 9999988877 566677888888888776
Q ss_pred CCcchhHHHHHHH-HHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhhcccccccccccccccc
Q 010630 133 DFRPRAIAVFVFG-FWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLT 211 (505)
Q Consensus 133 ~~~~~~~~~~~~~-~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l~~~~~~~~~~~~~~~ 211 (505)
+.+++. .++.|+|.++.+.+....+..+++ ++|+ .+.|+...+.++|..+-+.+...+....
T Consensus 135 -------~~l~lt~gvi~G~G~~~~~~paiviv~~YF~-kkR~--lA~Gia~~GsG~G~~~~~~l~~~l~~~~------- 197 (509)
T KOG2504|consen 135 -------WQLYLTFGVIGGLGLGLIYLPAVVILGTYFE-KKRA--LATGIAVSGTGVGTVVFPPLLKYLLSKY------- 197 (509)
T ss_pred -------HHHHHHHHHHhhccchhhhcchhhhhhhHhH-HHHH--HHHhhhhccCCcceeeHHHHHHHHHHHh-------
Confidence 444444 456789999999999999998886 6788 8999998888888887777655532222
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCC---------------------CC--CCC-cc------c-
Q 010630 212 SACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHD---------------------QS--APF-SE------E- 260 (505)
Q Consensus 212 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~---------------------~~--~~~-~~------~- 260 (505)
|||+.+++.+.+.+-+.+......|..+..... .. ++. .. +
T Consensus 198 --------G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (509)
T KOG2504|consen 198 --------GWRGALLIFGGISLNVLVAGALLRPLSPPKKPNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLA 269 (509)
T ss_pred --------CcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCchhhhhhccccccccccccccccccccCCCCCCcccccchh
Confidence 999999998877766666665555522221000 00 000 00 0
Q ss_pred CCCCCcchHH--HHHHHH----HHHHhcccHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhh
Q 010630 261 GHEQSSDVHE--AFLWEL----FGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMG 334 (505)
Q Consensus 261 ~~~~~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (505)
+.++.+++.. ...+.. ++.+++ +.++.+.+...+..+++.....+++.|... .+.+.. ..
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~d~~ll~~--~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~--~g~~~~----------~a 335 (509)
T KOG2504|consen 270 TLKRGPDKWRNSPLQAFLSMLDLSLLKD--PKFLLLALSNLFAYLGFNVPFVYLPSYAKS--LGLSSN----------DA 335 (509)
T ss_pred hhhhCCccccccchhhhhhhhhHHHHcC--chHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCCChh----------hh
Confidence 0000000000 111111 466677 888888888888888888888888887742 221111 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcch--HHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHH
Q 010630 335 ALGLMLNSVVLGITSVLMEKLCRKWGAG--FIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTIL 412 (505)
Q Consensus 335 ~~~~~~~~~~~~i~~~~~g~l~~r~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (505)
...+.+.++...++.++.|++.|+...+ ....++.++.+++....++.. +.+.+....+++
T Consensus 336 a~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~-----------------~~~~l~~~~~~f 398 (509)
T KOG2504|consen 336 AFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFAT-----------------TYVGLIVFSILF 398 (509)
T ss_pred HHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhc-----------------cHHHHHHHHHHH
Confidence 3444556888899999999999998743 344556666666665555553 567888899999
Q ss_pred hhHHHHHhhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHh
Q 010630 413 GGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILA 492 (505)
Q Consensus 413 g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 492 (505)
|+..+........++.|..+. ++...++|+...+..++..+||.+.|.+.|..| +|...|..++++.+++.+..+..
T Consensus 399 G~~~g~~~~l~~~i~~~~~g~--~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg-~Y~~~f~~~g~~~~~s~~~~~~~ 475 (509)
T KOG2504|consen 399 GFCVGSFSSLTPVILVDLVGL--EKLSNAYGLLLLFQGIGALVGPPIAGLLYDITG-NYDHAFYFCGLCFLLSAVLLLIL 475 (509)
T ss_pred HHHHHHHHHHHHHHHHHHcCh--hhcchHHHHHHHHhHHHHHcCcccceeeeeccC-CeeeehhhcChHHHHHHHHHHHh
Confidence 999999988888899999999 999999999999999999999999999999985 57788888888888887555544
Q ss_pred c
Q 010630 493 I 493 (505)
Q Consensus 493 ~ 493 (505)
.
T Consensus 476 ~ 476 (509)
T KOG2504|consen 476 R 476 (509)
T ss_pred H
Confidence 3
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-21 Score=171.30 Aligned_cols=392 Identities=14% Similarity=0.073 Sum_probs=240.7
Q ss_pred HHHHHHHHhhhhHH-HHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHHhcccc
Q 010630 45 FGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSAD 123 (505)
Q Consensus 45 ~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~ 123 (505)
..+.+....+.+-+ ...|.+..+..++......+..+++..+|.++| ++|||+.+.+.. +...+.-.+...+++
T Consensus 91 ~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d----~~grr~~f~~T~-l~t~v~~~is~~spn 165 (528)
T KOG0253|consen 91 AMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSAD----TIGRRKGFNLTF-LVTGVFGVISGASPN 165 (528)
T ss_pred HHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehh----hhhcchhhhhhH-HHHHHHHHhhcCCCC
Confidence 44555555555544 557888889999999999999999999999999 999999888744 444444445567777
Q ss_pred cccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhhcccccccc
Q 010630 124 IGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWF 203 (505)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l~~~~~~~ 203 (505)
+ ..+.+.+.+.++|.|+ .+...++-.|..|..+|. ..+-.. ..+.+|.+....+.-.....
T Consensus 166 f---------------~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~--~~~V~~-~~waig~v~ea~law~vm~~ 226 (528)
T KOG0253|consen 166 F---------------ASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRW--LLTVMS-FFWAIGQVFEALLAWGVMSN 226 (528)
T ss_pred e---------------ehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCC--cchhHH-HHHHHHHHHHHHHHHHHHHh
Confidence 6 7788889999999998 788889999999999998 444434 78888888887765442211
Q ss_pred ccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCc-------------------------
Q 010630 204 KILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFS------------------------- 258 (505)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~------------------------- 258 (505)
. ||||......... .......++++|+|+....+.++++
T Consensus 227 ~---------------gwr~~l~~~~~pl-~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~ 290 (528)
T KOG0253|consen 227 F---------------GWRYLLFTSSTPL-MFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSA 290 (528)
T ss_pred h---------------hHHHHHHHHHhHH-HHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeeh
Confidence 1 8999887777444 3444556778998875432222211
Q ss_pred ----ccCCC----CCcchHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHhhHhHHhhhHHHHHH-HHhCC----CCCCc
Q 010630 259 ----EEGHE----QSSDVHEAFLWELFGTFRYF-SGTIWIILIVTALTWLGWFPFLLFDTDWMGR-EIYGG----EPNEG 324 (505)
Q Consensus 259 ----~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~ 324 (505)
++++. .+.+..+....++...+... +|.-..+....+...+.+++.....+.+.+. +..+. .+.+.
T Consensus 291 ~~~~e~e~~~~~~~~~~a~ke~rg~~~nLlsp~lrkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~ 370 (528)
T KOG0253|consen 291 IDRQEQEESDLDDSKSSAAKEVRGGTTNLLSPKLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTEL 370 (528)
T ss_pred hhhhhhhhhchhhhhhccccccccchHhhcChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHH
Confidence 00000 00000011111111111100 0111112222222223333333222222210 00000 00000
Q ss_pred ---ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChh
Q 010630 325 ---QNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGI 401 (505)
Q Consensus 325 ---~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (505)
............-+++..+..+.|.++.+++.||+|||+.+..+.+++++..++..... .. +
T Consensus 371 e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~-------------~r--n 435 (528)
T KOG0253|consen 371 ETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCK-------------TR--N 435 (528)
T ss_pred HhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhc-------------Cc--c
Confidence 00000111222345556788889999999999999999999999999888777665552 11 1
Q ss_pred HHHHHHHHHHHhhHHHHHhhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHH
Q 010630 402 VIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGIS 481 (505)
Q Consensus 402 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~ 481 (505)
...+..+..-+.....+.+.+.+..|++|. ..|++..|..+....+|+++.|.++ ...+. .......+.+.+
T Consensus 436 --~~tvllf~arafisg~fqvaYvYtPEVyPT--avRatgvGtcSsmaRIggI~~p~iA-~~~e~---s~sl~i~vy~~~ 507 (528)
T KOG0253|consen 436 --AYTVLLFTARAFISGAFQVAYVYTPEVYPT--AVRATGVGTCSSMARIGGIFSPVIA-MRAEL---STSLPIFVYGAL 507 (528)
T ss_pred --hhHHHHHHHHHHHhchheEEEEecCcccch--hhhhcchhhhhhHHhhhhhhhhHHH-HHhcc---ceeehHHHHHHH
Confidence 122223333445556677888999999999 9999999999999999999999998 33332 234455566667
Q ss_pred HHHHHHHHHHhccCCCCC
Q 010630 482 ALAGGLIAILAIPRSSAQ 499 (505)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~ 499 (505)
++++.+...++.-|+|.+
T Consensus 508 ~ilagIavcffPiEtkGR 525 (528)
T KOG0253|consen 508 FILAGIAVCFFPIETKGR 525 (528)
T ss_pred HHHHHHHheeeeeccCCC
Confidence 777777776666666554
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.8e-21 Score=174.17 Aligned_cols=363 Identities=14% Similarity=0.099 Sum_probs=252.8
Q ss_pred hhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHHhcccccccccCCCCCCcchhHHHHHHH
Q 010630 66 AWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFG 145 (505)
Q Consensus 66 ~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (505)
+..+...++..+..++.+|+.|.++| +.|+||.++.....+.+.+.+++.+.++- ...+..++.
T Consensus 58 a~~gy~~aia~llia~LapiLG~iaD----~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~------------s~~~~~l~~ 121 (438)
T COG2270 58 AYWGYASAIAGLLIALLAPILGTIAD----YPGPRKKFFGFFTAIGIISTFLLWFIPPG------------SYLLLLLLF 121 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhc----cCCCcchHHHHHHHHHHHHHHHHHHhCCC------------chHHHHHHH
Confidence 46688888999999999999999999 99999999887777777777777666551 122445566
Q ss_pred HHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhhccc--c-ccccccccccccccccccccchh
Q 010630 146 FWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGS--F-SGWFKILPFTLTSACNVDCANLK 222 (505)
Q Consensus 146 ~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l~~--~-~~~~~~~~~~~~~~~~~~~~~~~ 222 (505)
..+..++........++++.+..++++-+ +..+.--....+|+.+.-.+.- . .......+...-......+..-|
T Consensus 122 ~il~~i~~~~s~Vfyds~L~~~~~k~~~~--riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~r 199 (438)
T COG2270 122 LILASIGFEFSNVFYDSMLPRLTTKDNMG--RISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVR 199 (438)
T ss_pred HHHHHHhcchhheehhhHhhhhcCccccC--cccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccch
Confidence 66778888899999999999999988777 6655444444444433322210 0 00000111111122233445788
Q ss_pred HHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCCCCCcchHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHh
Q 010630 223 SAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYF--SGTIWIILIVTALTWLG 300 (505)
Q Consensus 223 ~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 300 (505)
..+.+.++..++..+..++.+||.++..... .+.....++++++.+|+. ++++..+++..++..=+
T Consensus 200 i~~~l~A~W~li~~iPm~~~v~~~~~~~~~~------------~~~l~~g~k~L~~t~k~i~~~~~i~~FLiA~~~~~DG 267 (438)
T COG2270 200 ITGLLAALWWLLFALPMILNVHDAEKISSPP------------PTALRNGFKELKSTFKEIRGRKNLVLFLIARFFYIDG 267 (438)
T ss_pred hHHHHHHHHHHHHHhHHHhcccccccccccc------------hHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhh
Confidence 9999999999999999998888876532111 012334445554444433 25777777788777777
Q ss_pred hHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Q 010630 301 WFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAML 380 (505)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~ 380 (505)
......+...|-. ..++.+..+ ...+ .+...+.+++++++.|++.||+|.|+++..+.++..+..+...
T Consensus 268 v~til~~~~~fg~-~~~gls~~~---------lll~-g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~ 336 (438)
T COG2270 268 VNTILAMGGVFGA-ADLGLSSTE---------LLLI-GIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLI 336 (438)
T ss_pred HHHHHHHHHHHHH-HHcCccHHH---------HHHH-HHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHH
Confidence 7776666666543 223322211 1112 2235778889999999999999999999888887776666555
Q ss_pred HHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhh
Q 010630 381 ILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGS 460 (505)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~ 460 (505)
+.. ......+...+.|...|...+...++..+.+|+ ++.++.+|++++....++++||.+.
T Consensus 337 ~~~-----------------~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~--~k~~~fFglyaltgra~S~~gp~lv 397 (438)
T COG2270 337 FLE-----------------GELDFWILGLLVGTSLGGAQASSRSYLARLVPK--GKEGRFFGLYALTGRAASFLGPFLV 397 (438)
T ss_pred Hcc-----------------ccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCC--ccccceeehhhhhhhHHHHHHHHHH
Confidence 542 234566667888999999999999999999999 9999999999999999999999999
Q ss_pred hhhHhhhcCCCchHHHHHHHHHHHHHHHH
Q 010630 461 GPWDQLFGGGNSPAFAVGGISALAGGLIA 489 (505)
Q Consensus 461 g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 489 (505)
+.+.+.+|. ....+....++.+++.++.
T Consensus 398 ~v~t~iTg~-~r~g~~~i~vll~iGl~~L 425 (438)
T COG2270 398 AVITQITGS-SRAGVLSIIVLLLIGLLLL 425 (438)
T ss_pred HHHHHHhcc-hhhHHHHHHHHHHhhHhhE
Confidence 999999864 4555666666666666443
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-20 Score=170.30 Aligned_cols=384 Identities=13% Similarity=0.109 Sum_probs=259.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHH
Q 010630 31 RKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAIS 110 (505)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~ 110 (505)
-.........+...+.....-..+|.+.+.++++..+++++..++..++.+.+++.|++.+ |+|+|+.+++ ++.+
T Consensus 13 ~~~v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~k----k~gyk~gi~l-gL~l 87 (422)
T COG0738 13 LAFVLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIK----KLGYKAGIVL-GLLL 87 (422)
T ss_pred eHHHHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHH----HhhhHHHHHH-HHHH
Confidence 3444444455555555556667888888999999999999999999999999999999999 9999998888 5555
Q ss_pred HHHHHHHHhcccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHH
Q 010630 111 IAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGN 190 (505)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~ 190 (505)
.+++..++.-+.+ ...+..++++.++.+.|.+...+..+.++..+.++++.. +-+.+.+..+++|.
T Consensus 88 ~avg~~lF~pAa~------------~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~--~rlnl~q~fn~lGa 153 (422)
T COG0738 88 YAVGAALFWPAAS------------SKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAA--FRLNLAQAFNGLGA 153 (422)
T ss_pred HHHHHHHHhhhhh------------hhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHH--HHHHHHHHhhhhHH
Confidence 6666655532222 133467788888999999999999999999999998777 77889999999999
Q ss_pred HHHhhcccccccc-cc---ccccccccccccccchhHHHHHHHHHHHHHHHHhhhc-cccCCCCCCCCCCCCcccCCCCC
Q 010630 191 ILGYATGSFSGWF-KI---LPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASA-AHEVPLGSHDQSAPFSEEGHEQS 265 (505)
Q Consensus 191 ~ig~~l~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~ 265 (505)
+++|.+++.+... .. -+-............+++.|...+.+..++.+..... .||.+....++.
T Consensus 154 ~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~~~~~~----------- 222 (422)
T COG0738 154 ILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVAAPSLG----------- 222 (422)
T ss_pred HHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCccccccc-----------
Confidence 9999999873221 00 0000000111112357888888776666655543322 122211111110
Q ss_pred cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHH
Q 010630 266 SDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVL 345 (505)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (505)
+.++. ...+.+++ |.++...+..++.--.-.....+.+.|+.+. .+.+. ..+......+-...
T Consensus 223 --~~~~~--~~~~l~~~--~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~-~g~~~----------~~aa~~~s~~~~~~ 285 (422)
T COG0738 223 --ASGSA--GLSSLFQN--KHLRLGVLAIFLYVGAEVAIGSFLVSYLEEL-LGLNE----------QQAAYYLSFFWVGF 285 (422)
T ss_pred --ccccc--hHHHHHhC--hHHHHHHHHHHHHHhHHHHHHHHHHHHHHhc-CCccH----------HHHHHHHHHHHHHH
Confidence 00110 33455666 7888887777777766777788888887543 11111 12233344455667
Q ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhH
Q 010630 346 GITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYA 425 (505)
Q Consensus 346 ~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 425 (505)
++|.+++.++.+|+...|.+.+..++..+-++...+.+ + ...+....+.|+..+.++|..++
T Consensus 286 ~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~-----------------g-~v~~~~l~~ig~F~simfPTIfs 347 (422)
T COG0738 286 MVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIG-----------------G-VVALYALFLIGLFNSIMFPTIFS 347 (422)
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhc-----------------C-hHHHHHHHHHHHHhHHHHHHHHH
Confidence 78889999999999999999887777666666666662 2 44556677788999999999999
Q ss_pred hHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHH
Q 010630 426 LVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAG 485 (505)
Q Consensus 426 ~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 485 (505)
+..+..|+. .....+ .-.....|+++.|.+.|++.|..| ....+......+.+-
T Consensus 348 lal~~l~~~---ts~~s~-~l~maivGGAiiP~l~G~i~d~~g--~~~~~~~~pllc~ly 401 (422)
T COG0738 348 LALKNLGEH---TSVGSG-LLVMAIVGGAIIPPLQGVIADMFG--IQLTFLIVPLLCYLY 401 (422)
T ss_pred HHHhccCcc---ccccce-eeeeheecchHHHHHHHHHHHhhh--hHHHHHHHHHHHHHH
Confidence 999998852 222222 234456788999999999999987 444444333333333
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-20 Score=182.93 Aligned_cols=356 Identities=15% Similarity=0.152 Sum_probs=219.2
Q ss_pred HHHHHHHHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHHhccccc
Q 010630 45 FGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADI 124 (505)
Q Consensus 45 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~ 124 (505)
+......+.++.+.+++|-+ ....|+.+...+..++..|+.|+++| .||||..++. +.++.+++.+..+.+++.
T Consensus 58 ~~~~~~a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSD----lfGRr~~~i~-g~~l~vvG~Iv~atA~~~ 131 (599)
T PF06609_consen 58 FVLVLPASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSD----LFGRRYFFII-GSLLGVVGSIVCATAQNM 131 (599)
T ss_pred HHHhccHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHH----HhcchHHHHH-HHHHHHhHHHHhhcCCcH
Confidence 33334455667777999975 56678888899999999999999999 9999987776 667778888888787776
Q ss_pred ccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhhccccccccc
Q 010630 125 GWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFK 204 (505)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l~~~~~~~~ 204 (505)
..++.+..+.|++.+... .....++|..|.+.|. ...++.....-+....++.++.....
T Consensus 132 ---------------~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~R~--~~~~~~~~~~i~~~~~~~~ia~~~~~-- 191 (599)
T PF06609_consen 132 ---------------NTFIAGMVLYGVGAGVQE-LAALAISELVPNKWRG--LGLAIASIPFIITTWISPLIAQLFAA-- 191 (599)
T ss_pred ---------------HHHHHHHHHHHHhhHHHH-HHHHHHHHhcccchhh--hHhHHHHHHHHhhhcccHHHHHHhcc--
Confidence 778889999999876665 4456689999999888 66655544433333334444332111
Q ss_pred cccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCccc------------------------
Q 010630 205 ILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEE------------------------ 260 (505)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~------------------------ 260 (505)
..+|||.|++..++..+..+...++.+.+++.+.+.++....+
T Consensus 192 -------------~~~WRw~~~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl 258 (599)
T PF06609_consen 192 -------------HSGWRWIFYIFIIWSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGL 258 (599)
T ss_pred -------------CCCcchHHHHHHHHHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 1389999999988777666555444333222111111100000
Q ss_pred -------CCCCCcchHHH-----------HHHHH----------HHHHhcccHHHHHHHHHHHHHHHhhHhHHhhhHHHH
Q 010630 261 -------GHEQSSDVHEA-----------FLWEL----------FGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWM 312 (505)
Q Consensus 261 -------~~~~~~~~~~~-----------~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (505)
.+.+..+-... ...|. .+.+|+ +|.+...++..++....++....+.|...
T Consensus 259 ~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~wE~~~~~~~Pl~P~~Lf~~-~r~~~~~lvi~fi~G~~~~s~~~l~p~~~ 337 (599)
T PF06609_consen 259 SWGGYPYYPWKSAHVIAPLVIGFVLLVAFVVWEWFGAPKDPLFPHRLFKD-RRGFAALLVISFISGMNFFSVNILWPQQV 337 (599)
T ss_pred hccCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhccCCCCcCCHHHhcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00110000000 00010 133443 24555555555555555555555555544
Q ss_pred HHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcchHH-HHHHHHHHHHHHHHHHHHHHHhhhccc
Q 010630 313 GREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFI-WGISNILMALCFLAMLILYYVAIHMDY 391 (505)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~~r~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (505)
..+|..++.... + .+ +.....++...++..+.+.+..+++|-|. ++++..++.+++.++....
T Consensus 338 -~~vf~~d~~~~~--~----~~-~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~-------- 401 (599)
T PF06609_consen 338 -VNVFGSDPISIT--E----IG-WISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVR-------- 401 (599)
T ss_pred -hhhccCCCcccc--e----ee-hhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHcc--------
Confidence 234544332110 0 11 22233455666777888999988877554 4566666655555555443
Q ss_pred cCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHh
Q 010630 392 RGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQ 465 (505)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~ 465 (505)
|+ +....+...++.|++.+..........+-..|+ ++.|++.|+...+..+|+.+|..+...++.
T Consensus 402 -----~~--n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~--~~ig~a~gL~~s~R~~GGsIg~aIy~~I~~ 466 (599)
T PF06609_consen 402 -----PD--NKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPD--EDIGTATGLTGSIRSIGGSIGYAIYNAIFT 466 (599)
T ss_pred -----CC--CcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCc--hHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33 222334556677777777776666677777888 999999999999999999999988876653
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.4e-23 Score=187.87 Aligned_cols=400 Identities=14% Similarity=0.079 Sum_probs=241.9
Q ss_pred CCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHHhcccccccccCCCCCCcchhHHHH
Q 010630 63 IPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVF 142 (505)
Q Consensus 63 ~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (505)
.++...+.+..+..++.+++|+++|++.| |+|||+++... +++++++.++++++... +.....++++
T Consensus 81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD----~~GRK~vYG~~-liImIi~t~~~~~s~~~--------~~~~~~m~~L 147 (538)
T KOG0252|consen 81 YPSGVLALVNAAALVGTIFGQLFFGWLGD----KFGRKKVYGKE-LIIMIICSALSGLSVGT--------TSPLGVMMTL 147 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHh----hhcchhhhhHH-HHHHHHHHHHhccCCCC--------CCCcchhhHH
Confidence 56678899999999999999999999999 99999999874 44455555566665543 3444667888
Q ss_pred HHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhhccccccccccccccccccccccccchh
Q 010630 143 VFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLK 222 (505)
Q Consensus 143 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (505)
.+.|+++|+|.|+-+|...+..+|....+.|+ ...+.+-...+.|.+.|..++-++..-.-=|+-......+...-||
T Consensus 148 ~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RG--a~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWR 225 (538)
T KOG0252|consen 148 CFFRFLLGIGIGGDYPLSATIMSESANKKTRG--AFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWR 225 (538)
T ss_pred HHHHHHhhccccCCCcchHHHhhhhhhhcccc--ceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHH
Confidence 99999999999999999999999999999999 7777777777777777766655421100000000000111223588
Q ss_pred HHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCC--------Cc--------ccCCCCCcchHHHHHHHHHHHHhcc-cH
Q 010630 223 SAFFLDVIFIAITTCISASAAHEVPLGSHDQSAP--------FS--------EEGHEQSSDVHEAFLWELFGTFRYF-SG 285 (505)
Q Consensus 223 ~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~--------~~--------~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 285 (505)
..+.+..+ ..+..+...+.+||+++......++ .+ ++..+...+..++..+.+.+.+... -+
T Consensus 226 l~~glg~v-pa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~~~~~~~~~~~~~~~~~~~~~~~~F~~~f~~~hg~ 304 (538)
T KOG0252|consen 226 IIFGLGAV-PALLVLYFRLKMPETARYTALVSKKLKQAAGDMKKVLSVDIEAESTAESDVPPPSNSFGLFSRLFLRWHGK 304 (538)
T ss_pred HHHHHHHH-HHHHHHHhhhcCCcchhHHHHhhcCHhhhhhccccccccccchhhccccCCCCcccccchHHHHHHHHHHH
Confidence 88777664 3444455666788887654110000 00 0000001111122222222222220 02
Q ss_pred HHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Q 010630 286 TIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIW 365 (505)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~~r~g~~~~~ 365 (505)
.+...+..-++.-++.+....+....+.. .+..+... .+..-...+....++.....+.+.++...++|++|||+..
T Consensus 305 ~Llgt~~~WFllDiafy~~nL~~s~I~~~--ig~~~~~~-~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq 381 (538)
T KOG0252|consen 305 HLLGTAGTWFLLDIAFYGQNLFQSVIFSA--IGVIPSAN-TYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQ 381 (538)
T ss_pred HHHHHHHHHHhhhhhhhccccHHHHHHHh--hccCCCcc-hHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHH
Confidence 22222222233333444544455544421 12222221 1111111222223333333445667788899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhh-HHHHHhhchhHhHhhhhcccccchhHHHHH
Q 010630 366 GISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGG-PLAITYSVPYALVSIRTESLGLGQGLSLGV 444 (505)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 444 (505)
+.+.+++.+.++.+...... . . +.....+...+..+ +.-........+.+|.+|. +.||+..|+
T Consensus 382 ~~GF~~~~i~~~~~~~~y~~--~--------~---~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FPa--rvR~t~hGI 446 (538)
T KOG0252|consen 382 LMGFFIMTIFFFVIAGPYNQ--L--------E---NTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPA--RVRSTCHGI 446 (538)
T ss_pred HhhHHHHHHHHHHHcCCccc--c--------c---ccCceeehHHHHHHHHhcCCCceeEEeehhhchH--HHhhhhhhH
Confidence 99999988877766654210 0 1 11222222222222 2222334556777999999 999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhHh-----hhcCCCchHHHHHHHHHHHHHHHHHHhccCCCCC
Q 010630 445 LNLAIVIPQIVVSMGSGPWDQ-----LFGGGNSPAFAVGGISALAGGLIAILAIPRSSAQ 499 (505)
Q Consensus 445 ~~~~~~~~~~i~~~~~g~l~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (505)
...++..|++++.....++.+ ..| ....+++.+.+++++.+..++ .||++.+
T Consensus 447 sAA~GK~GAivg~~~F~~~t~~~yp~~~g--~~~v~~i~~~~~~~gi~~T~l-~pEtk~~ 503 (538)
T KOG0252|consen 447 SAASGKAGAIVGAFGFLYLTDHNYPPNIG--VRNVFIILAGCMLLGILFTLL-IPETKGK 503 (538)
T ss_pred HHHhccchHHHHHHHhhHhhhccCCcccc--chHHHHHHHHHHHHhHheeEE-eeccccc
Confidence 999999999999999999988 443 567888888888888866655 4466554
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-19 Score=175.85 Aligned_cols=379 Identities=12% Similarity=0.060 Sum_probs=218.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCC-CCcchhHHHH
Q 010630 30 LRKLLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRF-GRRRPFIVCG 107 (505)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~-Grr~~~~~~~ 107 (505)
.+.++..........+.++....++|.|+ +++|+++.+.+.+.+.+.....++.+++|+++| |+ ||||.++.+.
T Consensus 8 p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaD----RilGrrr~iliG~ 83 (493)
T PRK15462 8 PRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLAD----KVLGNRMAVMLGA 83 (493)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HccCcHHHHHHHH
Confidence 34455555566666777888888899887 568999999999999999999999999999999 98 9999887744
Q ss_pred HHHHHHHHHHHhcccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhccccc--ccchhhHhHHHHHH
Q 010630 108 AISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKD--HRRTRVANAYFSLF 185 (505)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~ 185 (505)
+...++.+++....+. . ....++..+..++.+...+...++++|.+|++ +|. .++++....
T Consensus 84 -il~~lg~lll~~~~~~------------~--~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~--sgf~i~Y~~ 146 (493)
T PRK15462 84 -LLMAIGHVVLGASEIH------------P--SFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRD--GGFSLMYAA 146 (493)
T ss_pred -HHHHHHHHHHHHhhcc------------h--hHHHHHHHHHHHhcccccccHHHHHHHHCCCCCcccc--ceehHHHHH
Confidence 4445444444322110 0 12223333444666666777789999999976 576 789999999
Q ss_pred HHHHHHHHhhccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCCCCC
Q 010630 186 MAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQS 265 (505)
Q Consensus 186 ~~~g~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 265 (505)
.++|..++|.+.+++.... +|++.|.+.++..++ .++.++..++...+....++++.+++ +..
T Consensus 147 ~nlG~~iap~l~g~L~~~~---------------Gw~~~F~iaaigm~l-~li~~~~~~~~l~~~~~~~~~~~~~~-~~~ 209 (493)
T PRK15462 147 GNVGSIIAPIACGYAQEEY---------------SWAMGFGLAAVGMIA-GLVIFLCGNRHFTHTRGVNKKVLRAT-NFL 209 (493)
T ss_pred HHHHHHHHHHHHHHHHhhh---------------ChHHHHHHHHHHHHH-HHHHHHHhhhhhccCCCCCCCCchhh-hHH
Confidence 9999999999988743322 899999987654433 33333332222111100000000000 000
Q ss_pred cc-----------------h-HHHHHHH----------------HH-HHHhc-ccHHHHHHH---HHHHHHHHhhHhHHh
Q 010630 266 SD-----------------V-HEAFLWE----------------LF-GTFRY-FSGTIWIIL---IVTALTWLGWFPFLL 306 (505)
Q Consensus 266 ~~-----------------~-~~~~~~~----------------~~-~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~ 306 (505)
.. . ..+.... +. +.... -+++.+... +...+.|..+.-...
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~er~r~~~~~~l~~~~~~Fw~~~~Q~~~ 289 (493)
T PRK15462 210 LPNWGWLLVLLVATPALITVLFWKEWSVYALIVATIIGLGVLAKIYRKAENQKQRKELGLIVTLTFFSMLFWAFAQQGGS 289 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhhHHHHHHHHHHHHHHHHHHHHhhH
Confidence 00 0 0000000 00 00000 012332222 222222222211111
Q ss_pred hhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcc--hH-----HHHHHHHHHHHHHHHH
Q 010630 307 FDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGA--GF-----IWGISNILMALCFLAM 379 (505)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~~r~g~--~~-----~~~~~~~~~~~~~~~~ 379 (505)
-.+.|..+++ |... -+++ +.. .+...++.+..++.+++..++-.|..+ |. -+.++.++.+++++.+
T Consensus 290 sl~lfa~~~v---d~~~-~g~~--ip~-~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l 362 (493)
T PRK15462 290 SISLYIDRFV---NRDM-FGYT--VPT-AMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCIL 362 (493)
T ss_pred HHHHHHHHhc---cchh-ccee--eCH-HHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 1222221111 1100 0111 122 233345666666667666666555522 21 2567888888888777
Q ss_pred HHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhcccccchhHHHHHHHHHH-HHHHHHHHh
Q 010630 380 LILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAI-VIPQIVVSM 458 (505)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~-~~~~~i~~~ 458 (505)
.+......+ ....+.++++....+.+++.-...|+..++++++.|+ +.+|..+|++.... .+++.++..
T Consensus 363 ~~~~~~~~~--------~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~--~~~g~~mg~w~l~~~~~~~~~~g~ 432 (493)
T PRK15462 363 TLSARWSAM--------YGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIP--GVTGVLTGIYMLLSGAIANYLAGV 432 (493)
T ss_pred HHHHhhcCC--------CCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 654321111 0112566788888889999999999999999999999 99999999985533 455555555
Q ss_pred hhhhh
Q 010630 459 GSGPW 463 (505)
Q Consensus 459 ~~g~l 463 (505)
+.+..
T Consensus 433 ~~~~~ 437 (493)
T PRK15462 433 IADQT 437 (493)
T ss_pred HHHHh
Confidence 44443
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.3e-22 Score=170.25 Aligned_cols=393 Identities=13% Similarity=0.157 Sum_probs=248.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHH
Q 010630 34 LKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAV 113 (505)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~ 113 (505)
+.++...|+..+++......-..+-++.+++.++..++.+++...+.+...++|++.|| |+|-|..-++.+.... +
T Consensus 47 v~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr---~fgir~gtii~~~fv~-~ 122 (459)
T KOG4686|consen 47 VFMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDR---RFGIRLGTIILCIFVF-L 122 (459)
T ss_pred HHHHHhcccceeecCCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehh---hhhhhHHHHHHHHHHH-H
Confidence 34455556665666655555555667888999999999999999999999999999997 7887765555343333 3
Q ss_pred HHHHHhcccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHH
Q 010630 114 AVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILG 193 (505)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig 193 (505)
+-+.++. ......+|.+..+|++.|+|.-....+.+.+...+++.++.+ .++|+......+|..+-
T Consensus 123 GqliFa~------------Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn--~vfGlqlSvAR~GstvN 188 (459)
T KOG4686|consen 123 GQLIFAA------------GGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELN--FVFGLQLSVARLGSTVN 188 (459)
T ss_pred HHHHHHh------------chHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCcccc--chhhHHHHHHHhhceee
Confidence 3333322 223455699999999999998877788899999999999999 99999999999998877
Q ss_pred hhcccccccc--ccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCCCCCcchHHH
Q 010630 194 YATGSFSGWF--KILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEA 271 (505)
Q Consensus 194 ~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (505)
..+.+++... ..+|... +...|....+-...+..-+......-+..++.++....++....|+ +
T Consensus 189 f~lm~~ly~~~~~~~~~~g-----hT~LG~~l~~~~~tc~~slical~lg~~D~rAerilh~e~g~~Ge~---------p 254 (459)
T KOG4686|consen 189 FLLMPFLYDTMGRMFPGVG-----HTLLGLWLCFEVKTCKQSLICALSLGLSDDRAERILHLEEGFLGEE---------P 254 (459)
T ss_pred eeecHHHHHHHHHhcccch-----HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcCcccCC---------c
Confidence 6665552110 0111000 0000111111111111111111111112221111100000000000 0
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHH
Q 010630 272 FLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVL 351 (505)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 351 (505)
.. ...++..+++|.+.+..++...+++++....+.+++ +-|+.++.++. .+-.. ....+.+.+++
T Consensus 255 kL----tdv~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~-~rfGlS~~~a~---------~i~s~-vy~Isav~spv 319 (459)
T KOG4686|consen 255 KL----TDVNTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQ-KRFGLSAVSAG---------NILST-VYGISAVLSPV 319 (459)
T ss_pred cc----ccccccCccHHHHHHHHHHHHHHHHHHhhhhHHHHH-HhhCCChhhcc---------chhhh-hhhhhhhhhhh
Confidence 00 011122378999999999999999998887777774 45665555431 12112 23335567788
Q ss_pred HHHHHHHhcchHHHHHHHHHHHH-HHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhh
Q 010630 352 MEKLCRKWGAGFIWGISNILMAL-CFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIR 430 (505)
Q Consensus 352 ~g~l~~r~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 430 (505)
.|.++||.|++..++.+..+..+ +-..+.+. .+..+....++|+.++......+..++.+
T Consensus 320 fg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft-------------------~lsPy~~m~~lGLsysllAcslWP~va~~ 380 (459)
T KOG4686|consen 320 FGAISDKYGFNLWWVASACILTLLGHSGLFFT-------------------FLSPYTSMTFLGLSYSLLACSLWPCVASL 380 (459)
T ss_pred HHHhHhhhcceehhHHHHHHHHHHHhhhHHhh-------------------hccHHHHHHHHhhhHHHHHHHHhhhhhhh
Confidence 99999999999887765544433 33333332 34456677888998888887788999999
Q ss_pred hcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCch---HHHHHHHHHHHHHHHHHHhccC
Q 010630 431 TESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSP---AFAVGGISALAGGLIAILAIPR 495 (505)
Q Consensus 431 ~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 495 (505)
+|+ ++.|+++|..+..+++|-.+.|.++|.+.|.-|+ +.+ .|+..+.+.+.+..+.+...++
T Consensus 381 vpE--~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~-y~~le~ffl~~~~~aL~svgil~~~N~k 445 (459)
T KOG4686|consen 381 VPE--EQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGS-YDNLEAFFLIIGLMALTSVGILFYLNKK 445 (459)
T ss_pred CCH--HHhcchHHHHHHHHhhhhhHHhhhhheeecCCCc-hhhHHHHHHHHHHHHHHHHHHHhheecc
Confidence 999 9999999999999999999999999999998653 322 2455555666665555554443
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.8e-19 Score=159.10 Aligned_cols=359 Identities=14% Similarity=0.125 Sum_probs=251.5
Q ss_pred HHHHHHHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHHhcccccc
Q 010630 46 GWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIG 125 (505)
Q Consensus 46 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (505)
......+.++.+.+++|+|.+.+|++.+++.+...+.+|+..+++. |+|.+|.+.. +.+...++..+=...
T Consensus 27 ~itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar----~~g~er~l~~-~Llli~~G~~iR~~~---- 97 (395)
T COG2807 27 AITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLAR----RFGEERSLFL-ALLLIAAGILIRSLG---- 97 (395)
T ss_pred hhhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHH----HHhhHHHHHH-HHHHHHHHHHHHhcc----
Confidence 4455567777888999999999999999999999999999999999 9999988776 444444444432221
Q ss_pred cccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhhcccccccccc
Q 010630 126 WLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKI 205 (505)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l~~~~~~~~~ 205 (505)
....++.+..+.|.+.+..+...++++-+.+|+ +-+ ..++++....++|..+++.+...+..+.
T Consensus 98 ------------~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk-~~~--~mtglYs~sl~~~aaLaa~lavpla~~~- 161 (395)
T COG2807 98 ------------GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPK-RVG--LMTGLYSTSLGAGAALAAALAVPLAQHS- 161 (395)
T ss_pred ------------cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhccc-chh--hHHhHHHHHHHHHHHHHhhhhhHHHHhh-
Confidence 126777888889999999999999999999984 456 7999999999999999988754422211
Q ss_pred ccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCCCCCcchHHHHHHHHHHHHhcccH
Q 010630 206 LPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSG 285 (505)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (505)
.+||....+-+...++..++.+ |...++..... + . + .++-.+.+|+ |
T Consensus 162 -------------~gW~~aL~~WAl~allAl~~Wl---Pq~~r~~~~~~---~--~-------~---~~~~~~vw~~--~ 208 (395)
T COG2807 162 -------------GGWRGALGFWALLALLALLIWL---PQALREQAASI---A--T-------K---LVSVRKVWRS--P 208 (395)
T ss_pred -------------ccHHHHHHHHHHHHHHHHHHHh---hhccccccccc---c--c-------c---cccccccccC--c
Confidence 3799988888766665544433 33211110000 0 0 0 0011234455 7
Q ss_pred HHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHh-cchHH
Q 010630 286 TIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKW-GAGFI 364 (505)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~~r~-g~~~~ 364 (505)
.-|.+.+...+....++....++|.++.+. +++.. .+...+....++.++.++..+.+.+|. ++|+.
T Consensus 209 ~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~----------G~sa~--~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~ 276 (395)
T COG2807 209 LAWQVTLFMGLQSLLYYIVIGWLPAILIDR----------GLSAA--EAGSLLSLMQLAQLPTALLIPLLARRSKNQRPL 276 (395)
T ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHHHc----------CCCHH--HhhhHHHHHHHHHHHHHHHHHHHHHHhcccchH
Confidence 888888888888888999999999887532 11111 112333445778889999999999976 55666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhcccccchhHHHHH
Q 010630 365 WGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGV 444 (505)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 444 (505)
.+....++.++...+.+. |. ...+...+++|++.+..++....++.+..++. ++.+.-.|+
T Consensus 277 ~~~~~~~~l~G~~G~~~~--------------P~----~~~~lw~~llG~G~G~~F~laL~li~~rs~~a-~~Aa~LSgm 337 (395)
T COG2807 277 VVLALLLMLVGLVGLLLA--------------PG----QLPILWALLLGLGQGGAFPLALTLILLRSSDA-AIAAALSGM 337 (395)
T ss_pred HHHHHHHHHHHHHHHHHh--------------hh----hHHHHHHHHHhCccchHHHHHHHHHHhhcCCh-HHHHHHHHH
Confidence 666777777777777766 32 11222257889999999999888888877653 777888888
Q ss_pred HHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHhcc
Q 010630 445 LNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIP 494 (505)
Q Consensus 445 ~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (505)
.+..+++-..+||.+.|++.|..| ++...+.....+.++..+..+..-|
T Consensus 338 aQg~GYllAa~GP~l~G~lhDa~g-sw~~~~~~l~~~~i~m~i~Gl~a~r 386 (395)
T COG2807 338 AQGVGYLLAAFGPWLFGFLHDATG-SWSAPLVLLALATLLMLIFGLRAGR 386 (395)
T ss_pred hhhhhHHHHhhhhhhHhHHHHhcC-ChHHHHHHHHHHHHHHHHHHhhcch
Confidence 899999999999999999999986 3444444444444444444444333
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.9e-19 Score=165.83 Aligned_cols=335 Identities=12% Similarity=0.076 Sum_probs=209.7
Q ss_pred hhhhHHHHhCCCchh-HHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHHhcccccccccCCC
Q 010630 53 LLTPYVQELGIPHAW-ASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDR 131 (505)
Q Consensus 53 ~~~~~~~~~g~s~~~-~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (505)
..|.+.+++|+++.+ .|.+.+++..++++.+++.|+++| |+|.|+.+.+. .+...+..++..++.++
T Consensus 48 a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaD----rlG~K~vL~l~-~l~Wsl~t~L~~fa~Sl------- 115 (511)
T TIGR00806 48 ITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTD----YLRYKPVLVLQ-ALSFVCVWLLLLLGTSV------- 115 (511)
T ss_pred HHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHH----HhCchHHHHHH-HHHHHHHHHHHHHHHHH-------
Confidence 344556899999999 999999999999999999999999 99999888774 44455555555565554
Q ss_pred CCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhhcccccccccccccccc
Q 010630 132 GDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLT 211 (505)
Q Consensus 132 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l~~~~~~~~~~~~~~~ 211 (505)
..+.+.|++.|++.+... +...++..++|+++|+ ++.++...+..+|.++++++++++ ...
T Consensus 116 --------~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~--ratsi~~sg~~vG~~Ia~~L~qll-~s~------- 176 (511)
T TIGR00806 116 --------WHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQ--RAAAYSRAAVLLGVFLSSVLGQLL-VTL------- 176 (511)
T ss_pred --------HHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH-Hhc-------
Confidence 788899999999999999 9999999999999999 999999999999999999998772 111
Q ss_pred ccccccccchhHHHHHH--HHHHHHHHHHhhhccccCCCCC----CCC-C-----CCCcccCCCC--Cc----chH----
Q 010630 212 SACNVDCANLKSAFFLD--VIFIAITTCISASAAHEVPLGS----HDQ-S-----APFSEEGHEQ--SS----DVH---- 269 (505)
Q Consensus 212 ~~~~~~~~~~~~~f~~~--~~~~~~~~~~~~~~~~e~~~~~----~~~-~-----~~~~~~~~~~--~~----~~~---- 269 (505)
+|++-+.+. .......+++..+++|..++.. .+. + +.++.++.+. .. ...
T Consensus 177 --------gWr~y~~Ln~Isl~s~~~a~~~a~~LP~~~~sl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (511)
T TIGR00806 177 --------GWISYSTLNIISLVFMTFSVFLALFLKRPKRSLFFNRLEDVRGALPCELDQMVPGPGGKLEDYLGTCRDSFL 248 (511)
T ss_pred --------CchhHHHHHHHHHHHHHHHHHHHHhCCCCchhhhhccccccccccccccccCCCCCccccchhhhhhhhHHH
Confidence 566543332 2223333334445555333210 000 0 0000000000 00 011
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCC-CCCCcccccccchhhHHHHHHHHHHHHHH
Q 010630 270 EAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGG-EPNEGQNYATGVRMGALGLMLNSVVLGIT 348 (505)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 348 (505)
+..++++.+..+| +.+....+-..+...++.-...|. |.++.. ++.+. .|+.++.. +..+.+.+.
T Consensus 249 ~~l~~~~~~~y~n--~~vl~WSlWwa~a~~g~~qv~~Y~-----Q~LW~~v~~~~~-~yNG~veA------~~tllga~~ 314 (511)
T TIGR00806 249 VRMLSELVTIYRN--PQLLLWSLWWVFNSAGYYLITYYV-----HTLWGTLDESLN-KYNGAVDA------ASTLLGAIT 314 (511)
T ss_pred HHHHHHHHHHhcC--cchhhhhHHHHHHhhHHHHHHHHH-----HHHHHHcCCCcc-ccCCHHHH------HHHHHHHHH
Confidence 1223444455555 444444444444443433333333 233322 12111 25543222 223445566
Q ss_pred HHHHHHHHHHhcchHHHH--HHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHh
Q 010630 349 SVLMEKLCRKWGAGFIWG--ISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYAL 426 (505)
Q Consensus 349 ~~~~g~l~~r~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 426 (505)
++..|++-.++.+...+. +..++.+..++++...+ +.|..++..++++..+....++...-
T Consensus 315 a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~~t~-----------------~Iw~~Y~~yvlf~~~y~flitia~~~ 377 (511)
T TIGR00806 315 SFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMSQSH-----------------DIWVLYVTYVLFRGIYQFLVPIATFQ 377 (511)
T ss_pred HHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhhccc-----------------chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777787755553322222 33333333333444332 68999999999999999988888888
Q ss_pred HhhhhcccccchhHHHHHHHHHHHHHHHHHHhh
Q 010630 427 VSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMG 459 (505)
Q Consensus 427 ~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~ 459 (505)
+++.... +..|..+|+.++...+-+.+-..+
T Consensus 378 iA~~L~~--~~~aLvFGiNtfvAl~LQtilT~i 408 (511)
T TIGR00806 378 IASSLSK--ELCALVFGINTFVATALKTIITAV 408 (511)
T ss_pred HHHHhcc--cceEEEEecHHHHHHHHHHheEEE
Confidence 8888777 888999998877766666555544
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.4e-20 Score=188.67 Aligned_cols=313 Identities=13% Similarity=0.107 Sum_probs=202.0
Q ss_pred HHHHHHHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHHhcccccc
Q 010630 46 GWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIG 125 (505)
Q Consensus 46 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (505)
........++.+.++++++..+.|++.+.+.++.++..++.|++.| |+||||.+.+ +.++..++.+++++++-..
T Consensus 48 ~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~----r~~r~~~i~~-g~ll~~lg~ll~alphf~~ 122 (633)
T TIGR00805 48 YNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGT----KLHRPIVIGI-GCAIMGLGSFLLSLPHFLS 122 (633)
T ss_pred HHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhc----ccCcceEEEe-cHHHHHHHHHHHhChHHhc
Confidence 3455566778888999999999999999999999999999999999 9999987777 5555666666665553110
Q ss_pred ccc-------------------CCCCC---------------Cc--chhHHHHHHHHHHHHhhhhcccchhhhHhhhccc
Q 010630 126 WLL-------------------GDRGD---------------FR--PRAIAVFVFGFWILDVANNMTQGPCRALLADLTG 169 (505)
Q Consensus 126 ~~~-------------------~~~~~---------------~~--~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~ 169 (505)
..+ ...+. .. ...+..++++|++.|++.+..++...+++.|++|
T Consensus 123 ~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~ 202 (633)
T TIGR00805 123 GRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAK 202 (633)
T ss_pred CCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCC
Confidence 000 00000 00 1134567789999999999999999999999999
Q ss_pred ccccchhhHhHHHHHHHHHHHHHHhhcccccccccc-cccc------ccccccccccchhHHHHHHHHHHHHHHHHhhhc
Q 010630 170 KDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKI-LPFT------LTSACNVDCANLKSAFFLDVIFIAITTCISASA 242 (505)
Q Consensus 170 ~~~r~~~~~~~~~~~~~~~g~~ig~~l~~~~~~~~~-~~~~------~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 242 (505)
+++|+ +..++......+|.++|+.+++++..... .+.. .+.......+.|+..|++.+++.++..++.+++
T Consensus 203 ~~~~~--~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~ 280 (633)
T TIGR00805 203 SKNSP--LYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFF 280 (633)
T ss_pred ccccH--HHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999 99999999999999999999887332110 0000 000001111247777888887777666554444
Q ss_pred cccCCCCCCCCC-CCCcccC----CCCC----cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhHhHHhhhHHHHH
Q 010630 243 AHEVPLGSHDQS-APFSEEG----HEQS----SDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMG 313 (505)
Q Consensus 243 ~~e~~~~~~~~~-~~~~~~~----~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (505)
.++.|+...+.+ +.+++++ .++. ....++..+..++.+++ |.++...+..++.......+..+.|.|+.
T Consensus 281 p~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~n--~~f~~~~l~~~~~~~~~~~~~~~lP~yl~ 358 (633)
T TIGR00805 281 PKALPKEGKRVNVDVHETEKLEKSEDKSRKKNSDITKDFPKIIKRLLCN--PIYMLVILAQVIDSLAFNGYITFLPKYLE 358 (633)
T ss_pred ccccCCcccccchhhhhhhcccccccccchhhhhhHHHHHHHHHHHHcC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333332211110 0000000 0000 01122334556777887 88888888888888888888889999984
Q ss_pred HHHhCCCCCCcccccccchhhHHHHHHHHH-HHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHHHHH
Q 010630 314 REIYGGEPNEGQNYATGVRMGALGLMLNSV-VLGITSVLMEKLCRKWG--AGFIWGISNILMALCFLA 378 (505)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~g~l~~r~g--~~~~~~~~~~~~~~~~~~ 378 (505)
..++.++... .+......+ ..+++.++.|+++||++ .|+.+..+.++..++.++
T Consensus 359 -~~~g~s~~~a----------g~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~ 415 (633)
T TIGR00805 359 -NQYGISSAEA----------NFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYLL 415 (633)
T ss_pred -HHcCCcHHHH----------HHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHHH
Confidence 3444333221 111222232 44678899999999997 456666666666555444
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-19 Score=177.12 Aligned_cols=379 Identities=13% Similarity=0.045 Sum_probs=228.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCC-cchhHHHHH
Q 010630 31 RKLLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGR-RRPFIVCGA 108 (505)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Gr-r~~~~~~~~ 108 (505)
..........+...+. ......+++++ +++|+|.++++...+...+...+ .+++|.++||.. .+|+ ||.+++.+.
T Consensus 26 ~~~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~-K~l~g~l~D~~~-i~G~rRr~~l~~~~ 102 (468)
T TIGR00788 26 VVLAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWAL-KPFAGVMSDTFP-LFGYTKRWYLVLSG 102 (468)
T ss_pred hHHHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHhcC-CCCccchHHHHHHH
Confidence 3444555566666666 55555566666 57999999999999988888777 555999999332 1233 555555454
Q ss_pred HHHH-HHHHHHhcccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHH---H
Q 010630 109 ISIA-VAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFS---L 184 (505)
Q Consensus 109 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~---~ 184 (505)
+... ..+..+...++. .....+..++.+++.+...++..++..|..+ ++++ ...+..+ .
T Consensus 103 ~l~~~~~~~~l~~~~~~--------------~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~--~~~~~~s~~~~ 165 (468)
T TIGR00788 103 LLGSAILYGLLPGKVSS--------------AKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPS--AGPSLVSWMWG 165 (468)
T ss_pred HHHHHHHHHhcccccch--------------HHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCC--cCCCeeeHHHH
Confidence 4442 222222221221 1333345677788899999999999999998 5444 3333333 3
Q ss_pred HHHHHHHHHhhccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcc---cC
Q 010630 185 FMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSE---EG 261 (505)
Q Consensus 185 ~~~~g~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~---~~ 261 (505)
..++|.++|+.+++.+.... +|+..|++.+++.++. .+..++.+|++.....+.++++. ..
T Consensus 166 ~~~~G~~vg~~l~G~l~~~~---------------~~~~~f~~~a~l~ll~-~~~~~~~~E~~~~~~~~~~~~~~~~~~~ 229 (468)
T TIGR00788 166 ASATGGLISSLLGGPLLDKT---------------LTRILFLITAALLLLQ-LFVSNLSKERRAFVRPRIGTYLEMNMAL 229 (468)
T ss_pred HHHHHHHHHHHHHHHHHHhc---------------CcchHHHHHHHHHHHH-HHHHHhcccccccccccccccchhhhhh
Confidence 34578888888887633222 7999999888777666 44456677764211111000000 00
Q ss_pred -CCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHH
Q 010630 262 -HEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLML 340 (505)
Q Consensus 262 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (505)
........++..+++++.+++ |.++...+..++.+........ ...+..+...+.++.. .......
T Consensus 230 ~~~~~~~~~~~~~~~l~~~l~~--~~i~~~l~fifl~~~~~~~~~~-~~f~~~~~~lG~s~~~----------~G~~~~~ 296 (468)
T TIGR00788 230 LTLGVLANVKVQILGLRGAIQL--LEIAKPLIFIFLSYANLPGASG-SVFCATTQCLPGGPSF----------SGMSKVV 296 (468)
T ss_pred hhhhHHHHHHHHHHHHHHHHhc--HHHHHHHHHHHHHHhhcCCCCc-eeEEEEcccCCCCcch----------hhhHHHH
Confidence 000000122334566666666 7776655444441111111100 0000111112222221 1122334
Q ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH-HHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHH
Q 010630 341 NSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLIL-YYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAIT 419 (505)
Q Consensus 341 ~~~~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 419 (505)
.+++.+++..+.+++.+|++.|+++.++.++.+++....... ..+... ....+.+......++.+++.+..
T Consensus 297 ~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~--------~gi~~~~~~~~~~~l~~~~~g~~ 368 (468)
T TIGR00788 297 GNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLA--------FGISDEVFVLGDSIIAEVLAQLK 368 (468)
T ss_pred HHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccc--------cCCCCeeeeeehhHHHHHHHHHH
Confidence 567788888999999999999999999888887766543221 111000 00012334455566777788888
Q ss_pred hhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhc
Q 010630 420 YSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFG 468 (505)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g 468 (505)
......++++..|+ +.+|+.+++.+...++|+.+++.++|.+.+..|
T Consensus 369 ~~~~~~~~~~~~p~--~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 369 FMPFLVLLARLCPS--GCESSVFALLASILHLGSSVSGFLGVLLMETIG 415 (468)
T ss_pred HccHHHHHHHhCCC--CceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 87788999999999 999999999999999999999999999999887
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.6e-25 Score=219.74 Aligned_cols=374 Identities=14% Similarity=0.183 Sum_probs=232.7
Q ss_pred hhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHHhccc---ccccccCCCCCCcchhHHHH
Q 010630 66 AWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSA---DIGWLLGDRGDFRPRAIAVF 142 (505)
Q Consensus 66 ~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 142 (505)
.+.++..+...++..+++++.|+++| |+|||+.++. +..+..++.++..+++ ++ +.+
T Consensus 46 ~~~~~~~~~~~~g~~~G~~~~g~~~d----~~GRk~~~~~-~~~~~~i~~~~~~~~~~~~~~---------------~~~ 105 (451)
T PF00083_consen 46 LLSSLLTSSFFIGAIVGALIFGFLAD----RYGRKPALII-SALLMIIGSILIAFAPSYNNF---------------WML 105 (451)
T ss_pred HHHHHHHHHHHhhhcccccccccccc----cccccccccc-ccccccccccccccccccccc---------------ccc
Confidence 45788899999999999999999999 9999998888 4555666666666766 54 788
Q ss_pred HHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhhccccccccccccccccccccccccchh
Q 010630 143 VFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLK 222 (505)
Q Consensus 143 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (505)
.++|++.|++.|...+....++.|..|+++|+ +..++.+....+|..++..++....... . ...||
T Consensus 106 ~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~--~~~~~~~~~~~~G~~~~~~~~~~~~~~~------~------~~~Wr 171 (451)
T PF00083_consen 106 LIGRFLIGFGIGGAYVVSPIYISEIAPPKHRG--FLSSLFQLFWALGILLASLIGYIVSYYS------D------NWGWR 171 (451)
T ss_pred cccccccccccccccccccccccccccccccc--cccccccccccccccccccccccccccc------c------ccccc
Confidence 89999999999999999999999999999999 8888888888888888776654321100 0 12699
Q ss_pred HHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCC--------------CCCcchHHHH---HHHHHHHHhcc--
Q 010630 223 SAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGH--------------EQSSDVHEAF---LWELFGTFRYF-- 283 (505)
Q Consensus 223 ~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~---~~~~~~~~~~~-- 283 (505)
..+.+.++..++. ++..+++||+|+....++++++.++. ++..++.+.. .....+.+++.
T Consensus 172 ~~~~~~~~~~l~~-~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 250 (451)
T PF00083_consen 172 ILLIFGAIPSLLV-LLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWRDLFRNKKY 250 (451)
T ss_pred ccccccccccccc-cccccccccccceecccccccccccccccccccccccccccccccccccccccceeeeeccccccc
Confidence 9888877665544 44557889998765433322221100 0000000000 01112222221
Q ss_pred cHHHHHHHHHHHHHH-HhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcch
Q 010630 284 SGTIWIILIVTALTW-LGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAG 362 (505)
Q Consensus 284 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~~r~g~~ 362 (505)
.++....+....+.. .+......|.+..+. . .+.+. .........+...++.++...+.||+|||
T Consensus 251 ~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~-~-~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~GRr 316 (451)
T PF00083_consen 251 RKRLLIALLLQFFQQFSGINFIFYYSPSIFE-N-AGISN------------SFLATLILGLVNFLGTLLAIFLIDRFGRR 316 (451)
T ss_pred ccccccccccccccccccccccccccccccc-c-ccccc------------ccccccccccccccccccccccccccccc
Confidence 012222222222221 122222233333221 1 11111 00111222344556666777999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHH-HHhhchhHhHhhhhcccccchhHH
Q 010630 363 FIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLA-ITYSVPYALVSIRTESLGLGQGLS 441 (505)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~g~~ 441 (505)
+++..+..+.+++...+........+. +.. .....+....+....++ ...+..+.+..|.+|. +.|+++
T Consensus 317 ~~~i~~~~~~~~~~~~~~~~~~~~~~~-------~~~-~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt--~~R~~~ 386 (451)
T PF00083_consen 317 KLLIIGLLLMAICSLILGIIFFLGVSS-------SSW-WSILSIVFLALFFAFFSLGWGPLPWIYTAELFPT--KVRSTG 386 (451)
T ss_pred ccccccccccccccccccccccccccc-------ccc-cccccceeeeeccccccccccccccccccccccc--cccccc
Confidence 999988888777776664100000000 000 01112222222222222 3345677889999999 999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHhccCCCCCC
Q 010630 442 LGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPRSSAQK 500 (505)
Q Consensus 442 ~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (505)
.|+......+++++++.+...+.+..+ ....+.+.+++++++.++.+.+.||++.+.
T Consensus 387 ~~~~~~~~~i~~~i~~~~~~~~~~~~~--~~~~~~i~~~~~~i~~i~~~~~lpET~g~~ 443 (451)
T PF00083_consen 387 IGLSYAVGRIGGFIIPFLFPYLFNNLG--GWGVFLIFAGVCLIAIIFVYFFLPETKGKT 443 (451)
T ss_pred ccccccccccccccccccccccccccc--ccccchhhHHHHHHHHhheeEEEeeCCCCC
Confidence 999999999999999999888888765 345666667777777778888899998765
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.9e-18 Score=173.63 Aligned_cols=365 Identities=14% Similarity=0.102 Sum_probs=235.5
Q ss_pred HHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHHhcccccccccCCCCCCcch
Q 010630 58 VQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPR 137 (505)
Q Consensus 58 ~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (505)
.+....+.....+..+++.++..+++.++|.++| |+|||++++.+ .++..++.+..++++++
T Consensus 110 ~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD----~~GRk~~~~~~-~~~~~i~~~~~a~a~~~------------- 171 (521)
T KOG0255|consen 110 WNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSD----RFGRKPVLLVS-LLLFIIFGILTAFAPNY------------- 171 (521)
T ss_pred hceeeCcHhHHHHHHHHHHHHHHHHHhhheehHh----hcccHHHHHHH-HHHHHHHHHHHHHhCcH-------------
Confidence 3556778888899999999999999999999999 99999988884 44455555777788887
Q ss_pred hHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhhcccccccccccccccccccccc
Q 010630 138 AIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVD 217 (505)
Q Consensus 138 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l~~~~~~~~~~~~~~~~~~~~~ 217 (505)
+.+++.|++.|++.+........++.|++++++|+ .+..+ ......++.+++..++++ .+
T Consensus 172 --~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~--~~~~~-~~~~~~~~~~~~~~~a~~-----~~---------- 231 (521)
T KOG0255|consen 172 --WMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRG--LALTL-GGFFFVGGLMLPAGAAYI-----TR---------- 231 (521)
T ss_pred --HHHHHHHHHHHhhccchhHHhHhhheeecCcchhh--HHHHH-HHHHHHHHHHHHHHHHHH-----Hh----------
Confidence 89999999999999999999999999999999999 88888 666666777777666652 22
Q ss_pred ccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCC-----------CCCcchHHHH--H-----------
Q 010630 218 CANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGH-----------EQSSDVHEAF--L----------- 273 (505)
Q Consensus 218 ~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~--~----------- 273 (505)
+||+.+++..+...+..++ ++..+|+++....+.+.++.++. .+.....+.. .
T Consensus 232 --~Wr~~~~~~~~~~~~~~~~-~~l~~Es~rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (521)
T KOG0255|consen 232 --DWRWLFWIISIPSGLFLLL-WFLPPESPRWLLSKGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPK 308 (521)
T ss_pred --hHHHHHHHHHHHHHHHHHH-HHccCcChHHHHHcCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCC
Confidence 8999999988777666555 66667988765444332211000 0000000000 0
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHH
Q 010630 274 WELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLME 353 (505)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g 353 (505)
..+...++. ++++...+...+.++.. ....|...+.... + |.... ......+..........+
T Consensus 309 ~~~~~l~~~--~~l~~~~~~~~~~~~~~-~~~y~gl~~~~~~-l------------g~~~~-~~~~~~~~~~~p~~~~~~ 371 (521)
T KOG0255|consen 309 ISFLDLFRT--PRLRYRTLYLLFIWFVF-SLVYYGLSLNVSG-L------------GGNIY-LNFTLSGLVELPAYFRNG 371 (521)
T ss_pred CchhhhhcC--HHHHHHHHHHHHHHHHH-hHHHHhhhhhhhh-c------------CchHH-HHHHHHHHHHhhHHHHHH
Confidence 012223333 33333333333333211 1111111111110 1 11111 112223335556666778
Q ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhcc
Q 010630 354 KLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTES 433 (505)
Q Consensus 354 ~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 433 (505)
...|+.|||.....+..+..++++...+.. .....+...+...+..++.+..+...+....|+.|+
T Consensus 372 ~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt 437 (521)
T KOG0255|consen 372 LLLPEFGRRPPLFLSLFLAGIGLLLFGWLP--------------DDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPT 437 (521)
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHHHHHhh--------------ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccH
Confidence 999999999999999999999998888773 111111233333333334444445558899999999
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHhccCCCCC
Q 010630 434 LGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPRSSAQ 499 (505)
Q Consensus 434 ~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (505)
..|..+.+..+....++.+++|.+.-...... ....+.+.+....+..++...+.||++..
T Consensus 438 --~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~lpet~~~ 498 (521)
T KOG0255|consen 438 --VVRNTAVGAISAAARLGSILAPLFPLLLRQMF---PLLGLILFGWLALLLGLLSLLLLPETKGK 498 (521)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc---ccchHHHHHHHHHHHHHHHHhcCcccCCC
Confidence 89999999999999999999998865444421 22333334556666666666777776654
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.4e-17 Score=150.86 Aligned_cols=352 Identities=18% Similarity=0.118 Sum_probs=231.0
Q ss_pred HHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCC-CcchhHHHHHHHHHHHHHHHhcccccccccCC----CC
Q 010630 58 VQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFG-RRRPFIVCGAISIAVAVLLIGLSADIGWLLGD----RG 132 (505)
Q Consensus 58 ~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~G-rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 132 (505)
..|++++....+.+.+...+. ....+.+|+.||+.++.+| ||.+++..+......+..+..++.- .++. .+
T Consensus 7 IvEL~vpA~lv~~lval~~~~-ap~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~---~l~~~~~~~~ 82 (403)
T PF03209_consen 7 IVELGVPAWLVALLVALHYLV-APLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALL---LLAESGQQSS 82 (403)
T ss_pred HHHhccHHHHHHHHHHHHHHH-HHHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHH---HHcccccccc
Confidence 478999999999999888876 4569999999994433333 7788988888877766655443211 1111 01
Q ss_pred CCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhhccccccccccccccccc
Q 010630 133 DFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTS 212 (505)
Q Consensus 133 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l~~~~~~~~~~~~~~~~ 212 (505)
...........+.+.+.|++.+...++..++++|..|+++|+ ++.++.....-+|.+++..+.+......
T Consensus 83 ~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~--~~v~ivw~Mli~G~iv~ai~~g~lL~~~-------- 152 (403)
T PF03209_consen 83 GPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRP--RVVAIVWVMLIVGIIVSAIVFGRLLDPF-------- 152 (403)
T ss_pred cccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhh--hhHHHHHHHHHHHHHHHHHHHHHHcccc--------
Confidence 122233344566677889999999999999999999999999 9999999999999999988877632211
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCCCCCcchHHHHHHHHHHHHhcccHHHHHHHH
Q 010630 213 ACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILI 292 (505)
Q Consensus 213 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (505)
.+......+...+++..+..++..+.. |++..+..+.+ ++ ++.+....+.+...+ |+.+.+..
T Consensus 153 ----s~~rL~~v~~~~a~i~~~l~~ia~wg~-E~r~~~~~~~~-------~~---~~~~f~~a~~~~~~~--~~a~~f~~ 215 (403)
T PF03209_consen 153 ----SPERLIQVIQGVALIALLLNLIALWGQ-EPRRSRRAAAA-------ER---PRPPFREAWRQVWAS--PQARRFFV 215 (403)
T ss_pred ----CHHHHHHHHHHHHHHHHHHHHHHHHhc-ccCCcccccCC-------CC---CCccHHHHHHHHHhC--CChhHHHH
Confidence 001222233333333333334443333 33222221100 00 011222233333344 55666656
Q ss_pred HHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHH-HhcchHHHHHHHHH
Q 010630 293 VTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCR-KWGAGFIWGISNIL 371 (505)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~~-r~g~~~~~~~~~~~ 371 (505)
..++..++++.-..-+.+|= -++|+++..+.... ....+.+..++..+.+++.. |.++++...++..+
T Consensus 216 fl~l~t~a~~~QD~iLEPyg-g~Vfgmsv~eTT~L----------ta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~ 284 (403)
T PF03209_consen 216 FLFLGTLAFFMQDVILEPYG-GEVFGMSVGETTRL----------TAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLL 284 (403)
T ss_pred HHHHHHHHHHhhHHHcCCch-hHHcCCCHHHHHHH----------HHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 55666666655555555554 35676666553211 11234445555556666555 67888888888888
Q ss_pred HHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhcccccchhHHHHHHHHHHHH
Q 010630 372 MALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVI 451 (505)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~ 451 (505)
.++++.++.... + ..+.+.+.....++|++.|.......+.+.+..++ ++.|..+|.+...+.+
T Consensus 285 ~~~~f~lii~a~-------------~-~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~--~~aG~~mG~WGaaQA~ 348 (403)
T PF03209_consen 285 GALAFALIILAG-------------P-LGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSA--GRAGLFMGAWGAAQAI 348 (403)
T ss_pred HHHHHHHHHHHH-------------h-cccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCC--cchhHHHHHHHHHHHH
Confidence 888887776663 1 11457788888999999999998888999999988 8999999999999999
Q ss_pred HHHHHHhhhhhhHhhh
Q 010630 452 PQIVVSMGSGPWDQLF 467 (505)
Q Consensus 452 ~~~i~~~~~g~l~~~~ 467 (505)
+..++..++|.+.|..
T Consensus 349 A~Glg~~~GG~~~D~~ 364 (403)
T PF03209_consen 349 ARGLGTFLGGALRDLV 364 (403)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998853
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.8e-17 Score=158.67 Aligned_cols=378 Identities=12% Similarity=0.081 Sum_probs=232.7
Q ss_pred HHHHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHHhccccccccc
Q 010630 49 LQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLL 128 (505)
Q Consensus 49 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (505)
....+.+.+.+++|+|..+++++.++... ..+.+++.|+++| |+|+|+++++ +.+...++.++++++.+.
T Consensus 45 ~fsv~s~~L~~~lgls~~~l~~i~svg~~-~g~~~lp~G~L~D----r~G~R~vlli-g~ll~~iG~ll~ala~~~---- 114 (591)
T PTZ00207 45 AFNLISGAMQARYNLTQRDLSTITTVGIA-VGYFLLPYSFIYD----YLGPRPIFVL-SMTVFCLGTLLFALTFQE---- 114 (591)
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHHHHHH-HHHHHHHHHHHHH----HhCcHHHHHH-HHHHHHHHHHHHHHHhcc----
Confidence 34456677789999999999999887544 3456778899999 9999988887 555566666666554110
Q ss_pred CCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhhc-ccccccccccc
Q 010630 129 GDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYAT-GSFSGWFKILP 207 (505)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l-~~~~~~~~~~~ 207 (505)
.....++.+.+.+++.|++.+...+.....+.+++| ++|+ ++.|+.....++|.++.+.+ .++..
T Consensus 115 -----~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG--~a~Gi~~~~~gLGsaI~~~l~~~l~~------ 180 (591)
T PTZ00207 115 -----VIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRG--AVVAIMKTFTGLGSAILGSIQLAFFS------ 180 (591)
T ss_pred -----cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhH--HHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 001234778888999999998888888889999997 6789 99999999999999764443 33311
Q ss_pred ccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCC--CCC--CCCc-------------------------
Q 010630 208 FTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSH--DQS--APFS------------------------- 258 (505)
Q Consensus 208 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~--~~~--~~~~------------------------- 258 (505)
.+|+..|++.+++.++..++.+.++++++.... +++ ++++
T Consensus 181 -----------~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~ 249 (591)
T PTZ00207 181 -----------DNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGF 249 (591)
T ss_pred -----------HhHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHH
Confidence 156777777777777777777666665542211 000 0000
Q ss_pred -----------------------------------------c--------------c-CCCC--------------Ccc-
Q 010630 259 -----------------------------------------E--------------E-GHEQ--------------SSD- 267 (505)
Q Consensus 259 -----------------------------------------~--------------~-~~~~--------------~~~- 267 (505)
. + +.+. .+.
T Consensus 250 ~i~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (591)
T PTZ00207 250 VILIILIVFLPLQGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDK 329 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCcCCCccccccccccccccccccccc
Confidence 0 0 0000 000
Q ss_pred ------h-H-HHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHH
Q 010630 268 ------V-H-EAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLM 339 (505)
Q Consensus 268 ------~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (505)
+ . .+...++++.+++ ..+|.+....++.+.+.........+ +.+..-+.+... +.......
T Consensus 330 ~~~~~~~~~~P~~~~t~~q~l~~--~d~Wll~~~~~cg~g~gl~~~~N~~q-I~~sl~g~~~~~--------~~~~~~vs 398 (591)
T PTZ00207 330 VVETDVDYIAPQFQETFIEGLKT--ARLWCLLWSIFCCVGAHFVIIFNARF-IYTALAGEAPDD--------ALNTLLTV 398 (591)
T ss_pred cccccccCCCCCCcchHHHHHhc--hhHHHHHHHHHHhhCchheeeecHHH-HHHHhcCCCCCc--------cceeeehh
Confidence 0 0 0000145555555 67888877777766443333332222 222221221111 00011223
Q ss_pred HHHHHHHHHHHHHHHHH----HHhc----chHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHH
Q 010630 340 LNSVVLGITSVLMEKLC----RKWG----AGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTI 411 (505)
Q Consensus 340 ~~~~~~~i~~~~~g~l~----~r~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (505)
+.++.+.+|.+..|.+. +|.. +|...+....++.++.+++.+.. | ...+++..++
T Consensus 399 L~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~~~~~~lll~~~~-------------p----~~~L~~~~~l 461 (591)
T PTZ00207 399 LNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSVCIITMLTLFLTL-------------P----KAALPLPYFI 461 (591)
T ss_pred hhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHC-------------C----ccHhHHHHHH
Confidence 45677777777777766 2221 11222222222555555555442 2 1357788899
Q ss_pred HhhHHHHHhhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHH-HhhhhhhHhhhc---CC--------CchHHHHHH
Q 010630 412 LGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVV-SMGSGPWDQLFG---GG--------NSPAFAVGG 479 (505)
Q Consensus 412 ~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~-~~~~g~l~~~~g---~~--------~~~~~~~~~ 479 (505)
.|+++|...++....++|++. ++.|+-+-+.....-+|..+- -.++|.++|.-. +. +...|++.+
T Consensus 462 vg~~~G~~~~~~~~i~selFg---k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~ 538 (591)
T PTZ00207 462 AAFANGFMAATIALVTRTIFA---KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLL 538 (591)
T ss_pred HHHHhhHhHHHHHHHHHHHhc---cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHH
Confidence 999999999999999999998 677887777777777777765 568888888642 11 235678877
Q ss_pred HHHHHHHHHHHHh
Q 010630 480 ISALAGGLIAILA 492 (505)
Q Consensus 480 ~~~~~~~~~~~~~ 492 (505)
.+++++.+....+
T Consensus 539 ~~~~~g~~~s~~l 551 (591)
T PTZ00207 539 GLSFLAFITSTYV 551 (591)
T ss_pred HHHHHHHHHHhhe
Confidence 7777777666544
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.9e-18 Score=161.76 Aligned_cols=420 Identities=15% Similarity=0.112 Sum_probs=234.4
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHHHHhhhhHHHH--hCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCC-
Q 010630 23 PARAKVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQE--LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGR- 99 (505)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Gr- 99 (505)
.+.++.+||.++......+......+...+-..+|+++ .+.+.+..|++.++..++.++.+|++|+++. |.++
T Consensus 26 ~~~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~----k~~~~ 101 (488)
T KOG2325|consen 26 LDERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSN----KTGSV 101 (488)
T ss_pred ccccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhccccc----ccCCc
Confidence 33445566777766666666666666666666788877 7888889999999999999999999999999 7764
Q ss_pred cchhHHHHHHHHHHHHHHHhcccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHh
Q 010630 100 RRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVAN 179 (505)
Q Consensus 100 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 179 (505)
|++++. +.+..+++.++....... .....++++++|++.|+|.+.. ....+++++....++|. +++
T Consensus 102 k~Pli~-s~ii~~~g~llY~~l~~~----------~~~~~y~mL~~R~l~Gvg~~n~-a~lR~Y~a~~s~~~dR~--rA~ 167 (488)
T KOG2325|consen 102 KKPLIV-SFLIAIIGNLLYLALAYV----------PNGVKYLMLVARILTGVGVGNF-AVLRAYIADASTVEDRP--RAF 167 (488)
T ss_pred ccCHHH-HHHHHHHHHHHHHHHHhc----------ccchHHHHHHHHHHcCcCcccH-HHHHHHHHhccCccchH--HHH
Confidence 678887 455566666555322221 1114478899999999887754 66799999988889999 999
Q ss_pred HHHHHHHHHHHHHHhhccccccccccccccccc---cccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCC
Q 010630 180 AYFSLFMAVGNILGYATGSFSGWFKILPFTLTS---ACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAP 256 (505)
Q Consensus 180 ~~~~~~~~~g~~ig~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 256 (505)
+..+.+..+|.++||.++.... |..... ..+..-+-+..+-++.+++.++..++..++.+|.++...+++.+
T Consensus 168 a~~~~~~vlg~ilGp~~q~~f~-----~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~~~~~~ 242 (488)
T KOG2325|consen 168 AATSGGFVLGIILGPTIQLAFT-----PLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGIIDKKKR 242 (488)
T ss_pred HHhhhHHHHHHHHhHHHHHHHh-----hhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCccccccc
Confidence 9888888888888887776511 110000 00000113455667777778888888888888877655433221
Q ss_pred CcccCCCCCcchHHHHHHHHHHHHhcccHHHHHHHH-HHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhH
Q 010630 257 FSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILI-VTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGA 335 (505)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (505)
.+++++.+.++.+.+ +.+.....+++ ..+...+.........+.. ....|+.+..++..++ .
T Consensus 243 ~~~~~~~~~~~~~~~----------~~d~~~~~vc~~~~~~~~~~~~~iet~~~~~-~m~~y~w~~~~av~~~------g 305 (488)
T KOG2325|consen 243 SVEEEKSDIEKVKKP----------KLDWVAVLVCIFLRFVVNFIATTIETLSSAL-TMVMYGWTGSEAVLYN------G 305 (488)
T ss_pred cchhhccchhhhccC----------ChhHHHHHHHHHHHHHHHHHHHHHHhccchH-HHHHhccccchHHHhh------h
Confidence 111111100000000 00011111111 1111122222212222222 2334554444332221 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhcchHHHHHHHHHHHHHHHHHHHHH-HHhhhccccC-----------CC---CCCC
Q 010630 336 LGLMLNSVVLGITSVLMEKLC-RKWGAGFIWGISNILMALCFLAMLILY-YVAIHMDYRG-----------HD---LPPN 399 (505)
Q Consensus 336 ~~~~~~~~~~~i~~~~~g~l~-~r~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----------~~---~~~~ 399 (505)
......++..+...+...... .++.+|+.+..+.+....+..+..... +...+-+..+ .| .+..
T Consensus 306 i~~~~~g~ls~~~~l~~~f~~l~~i~~r~~~~~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v 385 (488)
T KOG2325|consen 306 ITLSISGILSVILLLLYIFTRLGKIDKRRIILLGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAV 385 (488)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhccceeeeehHHHHHHhhheeeeeccccccccccccccccCcCcccchhhccCccc
Confidence 212222222222222222222 233344554444333333333222111 0000000000 00 0111
Q ss_pred hhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHH
Q 010630 400 GIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGG 479 (505)
Q Consensus 400 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~ 479 (505)
......+...+++|.+.........++-++...+ +++++..|+++....++..++|.....+....| ..+.+.+..
T Consensus 386 ~~~~~l~~~i~~~g~~~P~~~~~~~tlySkiLgp--~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g--~~~v~~~~~ 461 (488)
T KOG2325|consen 386 PLILYLISFIVVFGIAFPFISTALDTLYSKILGP--RDQGTMQGVFSISGSIARVVGPIFSTAIFTLSG--PRPVWIILL 461 (488)
T ss_pred ChhhheeehhheeccccccccchHHHHHHHHhCC--ccccceeEEEEeccchhhhhhHHHHhhhHHhcC--ccHHHHHHH
Confidence 1111222334456666666666677888999998 999999999999999999999999999999877 555555544
Q ss_pred HHHHHHH
Q 010630 480 ISALAGG 486 (505)
Q Consensus 480 ~~~~~~~ 486 (505)
...++..
T Consensus 462 ~~~l~~~ 468 (488)
T KOG2325|consen 462 CLLLVVA 468 (488)
T ss_pred HHHHHHH
Confidence 4444433
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.7e-17 Score=149.54 Aligned_cols=288 Identities=12% Similarity=0.069 Sum_probs=184.8
Q ss_pred hHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhhcccccccccccccccc-ccccc
Q 010630 138 AIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLT-SACNV 216 (505)
Q Consensus 138 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l~~~~~~~~~~~~~~~-~~~~~ 216 (505)
.+..++++.++.|.|.+..++..+++++++.+++++. +.+++.+..+++|..++|.+++.+........... ...+.
T Consensus 9 ~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~--~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~ 86 (310)
T TIGR01272 9 YYVLFLGALFVLASGLTILQVAANPYVSILGPIETAA--SRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANA 86 (310)
T ss_pred HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHH--HHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhH
Confidence 3578889999999999999999999999999998888 89999999999999999999886221100000000 00000
Q ss_pred cccchhHHHHHHHHHHHHHHHHh-hhccccCCCCCCCCCCCCcccCCCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 010630 217 DCANLKSAFFLDVIFIAITTCIS-ASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTA 295 (505)
Q Consensus 217 ~~~~~~~~f~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (505)
...+|++.|++.+.+..+..++. ....||.++++ + + + ..+++.. +.++.+++ |.++...+..+
T Consensus 87 ~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~~~--~-~--~--~~~~~~~-------~~~~~~~~--~~~~l~~~~~f 150 (310)
T TIGR01272 87 EAAKVHTPYLLLAGALAVLAIIFAFLPLPELQEAD--V-A--R--VSSGDTT-------QKTSAFQF--THLVLGALGIF 150 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCccc--c-c--c--ccccccc-------chhhHHhh--HHHHHHHHHHH
Confidence 11378889886665554444333 22233322111 1 0 0 0000000 01123344 56665555555
Q ss_pred HHHHhhHhHHhhhHHHHHHH-HhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Q 010630 296 LTWLGWFPFLLFDTDWMGRE-IYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMAL 374 (505)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~ 374 (505)
+..........|.+.|+.+. .++.++ .........+.....++.++.+++.||+|+|+.+.++..+..+
T Consensus 151 ~yvg~e~~~~~w~~~yl~~~~~~g~s~----------~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~ 220 (310)
T TIGR01272 151 VYVGAEVSAGSFLVNFLSDPHALGLPE----------DQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVL 220 (310)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 55546667777888888532 123222 1223444456677789999999999999999988887777766
Q ss_pred HHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhcccccchhHHHHHHHHHHHHHHH
Q 010630 375 CFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQI 454 (505)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~ 454 (505)
+.++.... + . ........+.|++.+..+|...+...+..|+ +.+++.++. ....+|+.
T Consensus 221 ~~~l~~~~--------------~---~-~~~~~~~~l~g~~~s~i~P~~~s~a~~~~~~---~~~~asai~-~~~~~Gg~ 278 (310)
T TIGR01272 221 LSIGAALT--------------H---G-YVAMWFVLALGLFNSIMFPTIFSLALNALGR---HTSQGSGIL-CLAIVGGA 278 (310)
T ss_pred HHHHHHHc--------------C---C-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh---hhhhhHHHH-HHHHhcch
Confidence 65444333 1 1 1123355578899999999988888888774 455666665 56779999
Q ss_pred HHHhhhhhhHhhhcCCCchHHHH
Q 010630 455 VVSMGSGPWDQLFGGGNSPAFAV 477 (505)
Q Consensus 455 i~~~~~g~l~~~~g~~~~~~~~~ 477 (505)
+.|.+.|.+.|..| ....+++
T Consensus 279 i~P~l~G~lad~~g--~~~a~~v 299 (310)
T TIGR01272 279 IVPLLQGSLADCLG--IQLAFAL 299 (310)
T ss_pred HHHHHHHHHHHhcc--chHHHHH
Confidence 99999999999876 5555553
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.4e-16 Score=142.24 Aligned_cols=376 Identities=15% Similarity=0.068 Sum_probs=227.1
Q ss_pred HHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHHhccc-ccccccCCCCCCcc
Q 010630 58 VQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSA-DIGWLLGDRGDFRP 136 (505)
Q Consensus 58 ~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 136 (505)
.+.+| +...+-|...++.+.+......+-|+.| |+|-|...++.+.+ .+++..+=..+. .+ -...
T Consensus 72 ~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ld----k~GLR~a~llgt~l-n~iGa~Ir~iss~p~--------v~~~ 137 (480)
T KOG2563|consen 72 NSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILD----KFGLRTALLLGTVL-NGIGAWIRLISSLPF--------VPPL 137 (480)
T ss_pred HHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhc----ccchHHHHHHHHHH-HHHHHHHhhhccCcc--------cccc
Confidence 34466 7778888999999999999999999999 99999888875544 444443322211 10 0111
Q ss_pred hhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhhccccccccccccccccccccc
Q 010630 137 RAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNV 216 (505)
Q Consensus 137 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l~~~~~~~~~~~~~~~~~~~~ 216 (505)
....+...+..+.+...-.....-.....-|+++++|. .+..+-.+++.+|.++|.++.++ +.|... +.
T Consensus 138 f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra--~A~~~~v~~n~LGvavg~llppi-----lV~~~~----~~ 206 (480)
T KOG2563|consen 138 FRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRA--IATVLGVMGNPLGVAVGFLLPPI-----LVPSSK----DS 206 (480)
T ss_pred chhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhh--hhhhHHHhcchHHHHHHhhccce-----ecCCCC----Cc
Confidence 12236667777777666666555566777899999999 89998889999999999988777 233221 01
Q ss_pred cccchhH--HHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCCCCCcchHHHHHHHHHHHHhcccHHHHHHHHHH
Q 010630 217 DCANLKS--AFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVT 294 (505)
Q Consensus 217 ~~~~~~~--~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (505)
....|.. .|+...++..+...+..+..+|+|+.+.......+ .+.+..+++++.+++ +++..+.+.+
T Consensus 207 ~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~~~---------~~~~f~~si~~~~~n--~~F~il~~~y 275 (480)
T KOG2563|consen 207 EDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQAAL---------QDASFPKSIKSCFKN--RQFIILAICY 275 (480)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhhh---------hcCcHHHHHHHHHcC--ccHHHHHHHH
Confidence 1113333 34444444444444444445554443332211100 022367788889998 7777766655
Q ss_pred HHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcchH-HHHHHHHHHH
Q 010630 295 ALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGF-IWGISNILMA 373 (505)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~~r~g~~~-~~~~~~~~~~ 373 (505)
.+....+.+....+..-+.. .+|+. ...|..+.. ..+++++++.+.|.+.||.++-+ ...+......
T Consensus 276 gi~~g~F~~l~~~l~~~l~~----------sgY~~-~~aG~ig~l-~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~ 343 (480)
T KOG2563|consen 276 GIGLGLFNSLSTLLNLALCP----------SGYEG-VFAGYIGAL-MIVAGMLGALASGIIADKTKKFKLTTLVLYLFAL 343 (480)
T ss_pred hhhHHHHHHHHHHhhhcccc----------ccCCc-cccchhHHH-HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH
Confidence 54443333333222211111 12221 222333333 45677899999999999987644 4444444444
Q ss_pred HHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhcccccchhHHHHHHHHHHHHHH
Q 010630 374 LCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQ 453 (505)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~ 453 (505)
++...+.... ......+.+.....++|++.....|+...+-.|..-+ ...|+..|+.+...++-+
T Consensus 344 v~~~~l~~~t-------------~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyP--v~E~tSsGll~~~gq~f~ 408 (480)
T KOG2563|consen 344 VGTLMLLTCT-------------LFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYP--VAEGTSSGLLNLSGQIFG 408 (480)
T ss_pred HHHHHHHHhh-------------ccCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccc--cCCcccceeEEeehhHHH
Confidence 4422222221 1111345566677778887777788888888887666 777888899999888888
Q ss_pred HHHHhhhhhhHhhhcC--CCchHHHHHHHHHHHHHHHHHHhccCC
Q 010630 454 IVVSMGSGPWDQLFGG--GNSPAFAVGGISALAGGLIAILAIPRS 496 (505)
Q Consensus 454 ~i~~~~~g~l~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (505)
.+-..+.+...+..+. +....-+.....+++++++..+++++.
T Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y 453 (480)
T KOG2563|consen 409 VILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDY 453 (480)
T ss_pred HHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhH
Confidence 8888888888876541 122333444455556666666665543
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3e-15 Score=139.87 Aligned_cols=414 Identities=16% Similarity=0.143 Sum_probs=248.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHhC----CCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHH
Q 010630 31 RKLLKVASVAGGIQFGWALQLSLLTPYV-QELG----IPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIV 105 (505)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g----~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~ 105 (505)
|.++.+...-+..-++++-....+..|+ .+++ +|++++.-+.+.+.-.--+...++||++|| -+|+||.+++
T Consensus 21 r~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr---~LG~~~tI~l 97 (498)
T COG3104 21 RGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADR---VLGTRRTIVL 97 (498)
T ss_pred chHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHH---hcchhHHHHH
Confidence 4566666666667777777766666665 4555 999999888888887777888999999994 4699998888
Q ss_pred HHHHHHHHHHHHHhccc--ccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHH
Q 010630 106 CGAISIAVAVLLIGLSA--DIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFS 183 (505)
Q Consensus 106 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 183 (505)
+.++..++.++.+.++ .. ..+.++..+..+|.|..-+...+++.|..|+++.+....+++..
T Consensus 98 -Gail~~iGh~~L~~~~~~~~---------------~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY 161 (498)
T COG3104 98 -GAILMAIGHLVLAISSVSGP---------------GGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFY 161 (498)
T ss_pred -HHHHHHHHHHHHhccccccc---------------cHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEE
Confidence 4555666776665543 22 45667777777999999999999999999976533226888888
Q ss_pred HHHHHHHHHHhhccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCCC
Q 010630 184 LFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHE 263 (505)
Q Consensus 184 ~~~~~g~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 263 (505)
++.++|+.++|.+.+++.... +|...|...++-..+..+..++.-+........+++... ....
T Consensus 162 ~~iNiGsl~~p~i~~~~~~~~---------------g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~-~~~~ 225 (498)
T COG3104 162 MGINIGSLIAPIITGLLAINY---------------GWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPL-SFNF 225 (498)
T ss_pred EEeehHHHHHHHHHHHHHHhh---------------CHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccch-hhhh
Confidence 999999999999988754433 899999988866555544443332221111111110000 0000
Q ss_pred CCcc----------h------HHHHHHH-------------HHHHHh-----cccHHHHHHH---HHHHHHHHhhHhHHh
Q 010630 264 QSSD----------V------HEAFLWE-------------LFGTFR-----YFSGTIWIIL---IVTALTWLGWFPFLL 306 (505)
Q Consensus 264 ~~~~----------~------~~~~~~~-------------~~~~~~-----~~~~~~~~~~---~~~~~~~~~~~~~~~ 306 (505)
.... . ..+.+.. +.+.++ +-+++.+..+ +...+.|..+.-..+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~er~r~~~~~~Lfl~~~iFW~~~~Q~~s 305 (498)
T COG3104 226 LLPVLGGLVVMILAALLTLLLNQNTFSGVLLVISILIAIIYFAEAFRSPKVFDERRRLLAAIPLFLFAVIFWALYEQMGS 305 (498)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 0000 0 0000000 000111 1113333322 222223322222222
Q ss_pred hhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcch-------HHHHHHHHHHHHHHHHH
Q 010630 307 FDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAG-------FIWGISNILMALCFLAM 379 (505)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~~r~g~~-------~~~~~~~~~~~~~~~~~ 379 (505)
-...|..+.+-+. ..++ .+.. .+.-.++.+.-++.+++..++..|.+++ .-+.++..+++.+++++
T Consensus 306 sl~~~a~~~v~~~----~~g~--~vp~-~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l 378 (498)
T COG3104 306 SLNLYADRNVNRQ----IFGF--EVPP-AWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLIL 378 (498)
T ss_pred hHHHHHHHhhccc----ccce--ecCH-HHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHH
Confidence 2222322222110 0011 1112 2333345566666677667776664332 22456777777777776
Q ss_pred HHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhh
Q 010630 380 LILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMG 459 (505)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~ 459 (505)
.....+.... ....+.++.+...++.+++.-...++..+++.+..|+ +-.+..++++-.....++.++..+
T Consensus 379 ~~~~~~~~~~-------~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~--~~~s~~ma~wfLt~a~~~~l~g~v 449 (498)
T COG3104 379 LLAGIWFGGP-------SGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPP--ALKSFIMAMWFLTVAAGQTLGGQV 449 (498)
T ss_pred HHHHHhhcCC-------CCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChH--HHHHHHHHHHHHHHHHHHHhhcee
Confidence 6653222210 1112577888889999999999999999999999999 999999999988888888888887
Q ss_pred hhh------hHhhhcCCCchHHHHHHHHHHHHHHHHHHhccCCC
Q 010630 460 SGP------WDQLFGGGNSPAFAVGGISALAGGLIAILAIPRSS 497 (505)
Q Consensus 460 ~g~------l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (505)
.+. ..+... ....|...+...++..+..+...|+.+
T Consensus 450 a~~~~~~~~~~~~~~--~~~~F~~~g~v~i~~~~~~~~~~~~~~ 491 (498)
T COG3104 450 AGLTAVTDPAYTAFI--EGRVFGTIGVVAIVIGILLLLLSPKLN 491 (498)
T ss_pred cccccccchhhhhhh--hhhhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 774 222222 344566766666666655555554433
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.4e-18 Score=168.38 Aligned_cols=406 Identities=15% Similarity=0.129 Sum_probs=2.9
Q ss_pred HHHHHHHHHHHHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHHhc
Q 010630 41 GGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGL 120 (505)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~ 120 (505)
+............++.+.+.++++.++.|++.+.+-++..+..++..++.+ | |+|..++..+.+++.++.+++.+
T Consensus 13 ~~q~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~----~-~hrprwig~g~~~~~~g~~l~~l 87 (539)
T PF03137_consen 13 LFQMMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGG----R-GHRPRWIGIGALLMGLGSLLFAL 87 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh----h-cCCcceeeecHHHHHHHHHHHhc
Confidence 333334455566777888999999999999999999999999999999999 7 57777888888888888887765
Q ss_pred ccccccccCCC-----------------------------------CCCcchhHHHHHHHHHHHHhhhhcccchhhhHhh
Q 010630 121 SADIGWLLGDR-----------------------------------GDFRPRAIAVFVFGFWILDVANNMTQGPCRALLA 165 (505)
Q Consensus 121 ~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~ 165 (505)
++-....+... +......+.+++++.++.|+|.+..++...+++-
T Consensus 88 Phf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiD 167 (539)
T PF03137_consen 88 PHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYID 167 (539)
T ss_dssp ----------------------------------------------------------------SSS-------------
T ss_pred cHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeec
Confidence 43221111000 1112234577788999999999999999999999
Q ss_pred hcccccccchhhHhHHHHHHHHHHHHHHhhcccccccccc-cccc------ccccccccccchhHHHHHHHHHHHHHHHH
Q 010630 166 DLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKI-LPFT------LTSACNVDCANLKSAFFLDVIFIAITTCI 238 (505)
Q Consensus 166 ~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l~~~~~~~~~-~~~~------~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 238 (505)
|.+++++-+ ...|+......+|.++|..+++....... ++.. .+.....+.+.|+..|++.+++.++.++.
T Consensus 168 Dnv~~~~sp--lYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aip 245 (539)
T PF03137_consen 168 DNVSKKNSP--LYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIP 245 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccCc--cchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988 99999999999999999999987322110 1111 11112233356888888888888877777
Q ss_pred hhhccccCCCCCCCCCC------CCcc---cCCCCC------cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhHh
Q 010630 239 SASAAHEVPLGSHDQSA------PFSE---EGHEQS------SDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFP 303 (505)
Q Consensus 239 ~~~~~~e~~~~~~~~~~------~~~~---~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (505)
...+.|+-|...+.+++ ++++ ++.++. .+..++..+.+++.++| |.+....+..........+
T Consensus 246 l~~FPk~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~N--p~f~~~~la~~~~~~~~~G 323 (539)
T PF03137_consen 246 LFFFPKKLPGTSERQEEKESSERKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTN--PVFMCLILAGVFESFIVSG 323 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHcCCccCCCcccccchhhhhhcchhhhhhhcccccccccchhhhhhhHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHH
Confidence 77666555544111000 0000 000000 01234455666777777 8888888888888888888
Q ss_pred HHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHHH---
Q 010630 304 FLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGA--GFIWGISNILMALCFLA--- 378 (505)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~~r~g~--~~~~~~~~~~~~~~~~~--- 378 (505)
+..|.|.|+. ..|+.++..+..+ .+. +.-...+++.+++|.+.+|++. |+.+....+...+..+.
T Consensus 324 ~~tF~pKylE-~QF~~sas~A~~l--------~G~-v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~~~~ 393 (539)
T PF03137_consen 324 FATFLPKYLE-SQFGLSASQASLL--------TGI-VSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVILYSP 393 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHH-HHhCCCHHHHHHH--------Hhh-hhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999994 4566555443111 111 1222445777899999999853 44443333333333222
Q ss_pred HHHHH-----HHhhhcccc------C---------------------CCCCCC--hhHHHHHHHHHHHhhHHHHHhhchh
Q 010630 379 MLILY-----YVAIHMDYR------G---------------------HDLPPN--GIVIAALIIFTILGGPLAITYSVPY 424 (505)
Q Consensus 379 ~~~~~-----~~~~~~~~~------~---------------------~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~ 424 (505)
..+.. ....+..|. . +.=+.. .....+++..++..+..+.......
T Consensus 394 ~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~ 473 (539)
T PF03137_consen 394 LFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPST 473 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccchh
Confidence 11110 000000110 0 000010 1122233333333333333444445
Q ss_pred HhHhhhhcccccchhHHHHHHHHHHH-HHHHHHHhhhhhhHhhh
Q 010630 425 ALVSIRTESLGLGQGLSLGVLNLAIV-IPQIVVSMGSGPWDQLF 467 (505)
Q Consensus 425 ~~~~~~~~~~~~~~g~~~g~~~~~~~-~~~~i~~~~~g~l~~~~ 467 (505)
..+-+.+|+ ++|+.+.|+..+... +|.+-+|++.|.+.|..
T Consensus 474 ~i~LR~V~~--~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~t 515 (539)
T PF03137_consen 474 LITLRCVPP--EQRSFALGVQWLIIRLLGFIPGPIIFGAIIDST 515 (539)
T ss_dssp --------------------------------------------
T ss_pred eeeeccCCh--hhcchhhhHHHHHHHhhcCcchHHHHhHHHhhh
Confidence 566788898 999999999876655 66777999999999963
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.8e-13 Score=132.78 Aligned_cols=394 Identities=16% Similarity=0.169 Sum_probs=222.1
Q ss_pred hhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCC-CcchhHHHHHHHHHHHHHHHhcccccccccCCC
Q 010630 53 LLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFG-RRRPFIVCGAISIAVAVLLIGLSADIGWLLGDR 131 (505)
Q Consensus 53 ~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~G-rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (505)
..+.+.+++|+++++...+.+...+. -...|+.|.++|... -+| |||++++.+.++..++...++..+..
T Consensus 12 ~~~~l~~~l~ls~~~~~~~~~~~~lP-w~~Kp~~g~lsD~~p-i~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~------- 82 (433)
T PF03092_consen 12 IYPFLKDDLGLSPAQLQRLSSLASLP-WSIKPLYGLLSDSFP-IFGYRRKPYMIIGWLLGAVSALVLALLPAS------- 82 (433)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhCc-hHHhhhHHhhccccc-ccCCcchHHHHHHHHHHHHHHHHHHhcccc-------
Confidence 34455688999999999888777765 456789999999543 224 77788777777665555555444432
Q ss_pred CCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhhcccccccccccccccc
Q 010630 132 GDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLT 211 (505)
Q Consensus 132 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l~~~~~~~~~~~~~~~ 211 (505)
........+..++..++.........+++.|...++.+..+...+.......+|.+++..++|......
T Consensus 83 ----~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~------- 151 (433)
T PF03092_consen 83 ----ESSAAIAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSF------- 151 (433)
T ss_pred ----cchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcC-------
Confidence 111133445556667888999999999999998554433227788888889999999998887743322
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCCCCCcchHHHHHHHHHHHHhcccHHHHHHH
Q 010630 212 SACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIIL 291 (505)
Q Consensus 212 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (505)
+++..|.+.+++..+..+...+..+|++..+..+.....+++.+......++..+++++.++. +..+...
T Consensus 152 --------~~~~~f~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~i~~~~ 221 (433)
T PF03092_consen 152 --------GPQGVFLISAALPLLMLIVALFLLEERKVRPADEVFSFGKEEVPCLFGSFREQLSELWRALQQ--RAIWQPI 221 (433)
T ss_pred --------CCeEEehHHHHHHHHHHHHHHHhhhhccccccchhhcccccccchhhHHHHHHHHHHHHHHhh--hHHHHHH
Confidence 677778887777666666666666663322221111111111111111134556677777777 6666654
Q ss_pred H-HHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Q 010630 292 I-VTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNI 370 (505)
Q Consensus 292 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~~r~g~~~~~~~~~~ 370 (505)
+ ..++.......... ...|...+..+ .+ .++.. ..+... .+..++.+++..+..+...+..-|+++....+
T Consensus 222 ~~~~~~~~~~~~~~~a-~~fy~~~~~~~-gp----~fs~~-f~~~~~-~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~ 293 (433)
T PF03092_consen 222 LFFIFFFNLPPSISSA-SSFYFQTDALG-GP----HFSPS-FYGTLS-IVGSIASLLGILLYRKYFSNWSWRRIFVVTTL 293 (433)
T ss_pred HHHHHHHHhccCCCCc-cEEEEEecccc-cc----ccCHH-HHHHHH-HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4 22222111100000 00011000000 00 01100 011122 33555666666777777777777888776665
Q ss_pred HHHHHHHHHHH-HHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhcccccchhHHHHHHHHHH
Q 010630 371 LMALCFLAMLI-LYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAI 449 (505)
Q Consensus 371 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~ 449 (505)
+..+..+.-.. ...++.. .+.|+ . +..+.-.++..+.....+-....+++++.|+ ...|+.+++.....
T Consensus 294 ~~~~~~l~~~~lv~~~n~~-----~Gi~d--~-~f~lgd~~l~~~~~~i~~mP~lvl~a~lcP~--G~Egt~yall~s~~ 363 (433)
T PF03092_consen 294 VSVLASLFDLLLVTRWNLD-----LGIPD--Q-WFALGDTILEEVIGMIAFMPSLVLAARLCPK--GSEGTVYALLASFS 363 (433)
T ss_pred HHHHHhcccEEEEEEEeee-----eCcCC--e-EEEEEhHHHHHHHHHHHHHHHHHHHHHHCCC--CchHHHHHHHHHHH
Confidence 55443332111 1100000 00122 1 2222233333443444443445778999999 99999999999999
Q ss_pred HHHHHHHHhhhhhhHhhhcCC------CchHHHHHHHHHHHHHHHHHHhcc
Q 010630 450 VIPQIVVSMGSGPWDQLFGGG------NSPAFAVGGISALAGGLIAILAIP 494 (505)
Q Consensus 450 ~~~~~i~~~~~g~l~~~~g~~------~~~~~~~~~~~~~~~~~~~~~~~~ 494 (505)
++|..++..++..+.+.++.. .....+++.++.++...+..++.|
T Consensus 364 Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~ll~lLp~ 414 (433)
T PF03092_consen 364 NLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPLLFLLPP 414 (433)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999887621 122344555555555544444444
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.4e-13 Score=134.17 Aligned_cols=322 Identities=12% Similarity=0.119 Sum_probs=214.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHH
Q 010630 36 VASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAV 115 (505)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~ 115 (505)
++...+...+........+..+.+.++++.++.|++.+.+-++..+...+..+..- |. +|..++..+.+.+.++.
T Consensus 102 l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~----r~-HrPr~Ig~G~~~m~lgs 176 (735)
T KOG3626|consen 102 LSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGS----RG-HRPRWIGIGLVLMGLGS 176 (735)
T ss_pred HHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhcc----cc-CccceeeechhHHHHHH
Confidence 34444444454455566677778899999999999999999999999999999998 75 56667766777777777
Q ss_pred HHHhcccccccccC------------C-------------C-------C-----CCcchhHHHHHHHHHHHHhhhhcccc
Q 010630 116 LLIGLSADIGWLLG------------D-------------R-------G-----DFRPRAIAVFVFGFWILDVANNMTQG 158 (505)
Q Consensus 116 ~~~~~~~~~~~~~~------------~-------------~-------~-----~~~~~~~~~~~~~~~l~g~~~~~~~~ 158 (505)
++..+..-....+. + . + ......+.+++++.++.|+|....++
T Consensus 177 ll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~t 256 (735)
T KOG3626|consen 177 LLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFT 256 (735)
T ss_pred HHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCcc
Confidence 77766421111000 0 0 0 11122345677888999999999999
Q ss_pred hhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhhcccccccccc----ccccccccccccccchhHHHHHHHHHHHH
Q 010630 159 PCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKI----LPFTLTSACNVDCANLKSAFFLDVIFIAI 234 (505)
Q Consensus 159 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~f~~~~~~~~~ 234 (505)
...+++-|...+++-. ...|+......+|.++|.+++++...... -+...+.....+.+.|+..|++.+.+.++
T Consensus 257 lGisYiDDnvk~~~Sp--lYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~ 334 (735)
T KOG3626|consen 257 LGISYIDDNVKKKNSP--LYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLF 334 (735)
T ss_pred CCCccccccccccCCc--HHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHH
Confidence 9999999999999888 99999999999999999999998322211 11222333444556788899999988888
Q ss_pred HHHHhhhccccCCCCCCCCC----CCCccc-----CCCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhHhHH
Q 010630 235 TTCISASAAHEVPLGSHDQS----APFSEE-----GHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFL 305 (505)
Q Consensus 235 ~~~~~~~~~~e~~~~~~~~~----~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (505)
..+..+++.++.|+..++.+ +..+.+ +.....+..++..+.+++.++| |.+...++...+....+.++.
T Consensus 335 ~a~p~f~fPk~lp~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ikdfp~s~~~ll~N--~if~~~~l~~~~~~~~~~G~~ 412 (735)
T KOG3626|consen 335 SAVPLFFFPKELPKSQKRKRARDLHVLKTESGGAKSDKTFGKKIKDFPKSIKRLLSN--PIFMLVVLASVIESLAITGYI 412 (735)
T ss_pred HHHHHHhCcccCccccccchhhhhcccccccccccCCcchhhhHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHhhHH
Confidence 88888777666665432110 000011 1111112335666777888888 888888888888888999999
Q ss_pred hhhHHHHHHHHhCCCCCCcccccccchhhHHHH-HHHHHHHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHHHH
Q 010630 306 LFDTDWMGREIYGGEPNEGQNYATGVRMGALGL-MLNSVVLGITSVLMEKLCRKWG--AGFIWGISNILMALCFL 377 (505)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~g~l~~r~g--~~~~~~~~~~~~~~~~~ 377 (505)
.|.|.|+. ..|+.++..+ .... .+.-.+..+|.+++|++.+|+. .|....+..+...+.++
T Consensus 413 tFlPKyLE-~Qfg~sas~A----------n~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~l~ 476 (735)
T KOG3626|consen 413 TFLPKYLE-TQFGISASLA----------NILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLSLL 476 (735)
T ss_pred HhhHHHHH-HHcCCCHHHH----------HHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHHHH
Confidence 99999994 4455443332 1111 1122234566688999999984 34444444444333333
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.1e-12 Score=126.13 Aligned_cols=318 Identities=16% Similarity=0.119 Sum_probs=200.1
Q ss_pred hhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHHhcccccccccCCCCCCcchhHHHHHHHHHHHH--hh
Q 010630 75 GPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILD--VA 152 (505)
Q Consensus 75 ~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g--~~ 152 (505)
..+...+.++..|.++| |+|||..+.. ..+...+..+...+.. +++++ +.+ .+
T Consensus 71 ~~~~~~i~s~~iG~lSD----~~grk~~L~~-~~~~~~l~~~~~~~~~-----------------~~~~~---~~~l~g~ 125 (463)
T KOG2816|consen 71 AGLLTLISSPLIGALSD----RYGRKVVLLL-PLFGTILPALCLLFQG-----------------YWFFL---LLGLSGG 125 (463)
T ss_pred hHHHHHHHHhhhHHhhh----hhhhhhhHHH-HHHHHHHhHHHHHHHH-----------------HHHhh---hcccccc
Confidence 35777899999999999 9999987766 4444444444433221 22222 222 33
Q ss_pred hhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhhccccccccccccccccccccccccchhHHHHHHHHHH
Q 010630 153 NNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFI 232 (505)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~ 232 (505)
.........++++|....++|. ...++.+.....+..++|.+++...... +....|.+..+..
T Consensus 126 ~~~~~s~~~a~vadis~~~~R~--~~~gll~~~~~~~~~~~p~~~~~~~~~~---------------~~a~~f~ia~~~~ 188 (463)
T KOG2816|consen 126 FSAIFSVGFAYVADISSEEERS--SSIGLLSGTFGAGLVIGPALGGYLVKFL---------------GIALVFLIAAASG 188 (463)
T ss_pred hhhhhhhhhhheeeccchhHHH--HHHHHHHHHHHHHHhHHHHHHHHHHHhc---------------CchHHHHHHHHHH
Confidence 4455667789999999999999 9999999999999999999988733222 7777899999899
Q ss_pred HHHHHHhhhccccCCCCCCCCC-CCCcccCCCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhH-hHHhhhHH
Q 010630 233 AITTCISASAAHEVPLGSHDQS-APFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWF-PFLLFDTD 310 (505)
Q Consensus 233 ~~~~~~~~~~~~e~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 310 (505)
.+..+...+++||+..+++++. +..+.+..........+..+...+ .+. +|..+.++...++....-. ...-..+.
T Consensus 189 ~~~~~y~~~~l~Esl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~r~~l~l~l~~~~~~~~~~~~~~~~~~~ 266 (463)
T KOG2816|consen 189 ILSLLYMLLFLPESLQEKERSDATLRELTPGSLDSSHVADAFQSLTK-VGP-DRLLLLLLLVAFLSSLPEAGGASDVLLL 266 (463)
T ss_pred HHHHHHHhhccccccCccccccccccccCCCcccchhhhhhhhhhcc-cCC-CccchHHHHHHHHHHHHHhcCceeEEEE
Confidence 9999999999999876554442 111111111111112222232222 222 2444444443333322111 11101111
Q ss_pred HHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHH-HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 010630 311 WMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVL-MEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHM 389 (505)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (505)
|+ ...++.+..+. ............++.++ .+.+...+|.|+.+..|.....+...++.+..
T Consensus 267 yl-~~~f~w~~~~~----------s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~------ 329 (463)
T KOG2816|consen 267 YL-KAKFGWNKKEF----------SDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFAT------ 329 (463)
T ss_pred EE-eeecCcCHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhc------
Confidence 11 12222222211 11122345556666654 45788888999988889998888888888874
Q ss_pred cccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhh
Q 010630 390 DYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLF 467 (505)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~ 467 (505)
..|..+....+. .......+...+..+...++ +++|+++++.+.+..++..++|.+.+.++..+
T Consensus 330 -----------~~w~~~~~~v~~-~~~~~~~pa~~s~~s~~v~~--~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~t 393 (463)
T KOG2816|consen 330 -----------ETWMMFAAGVVV-ALAGIVFPAIRAFASILVSP--EEQGKVFGIISGIEGLSGVVSPALYGNIFALT 393 (463)
T ss_pred -----------cchhhhHHHHHH-HhhcchhHHHHhHHHhhccc--ccccchhhHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 234443333333 33445566777888999998 99999999999999999999999999987654
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.9e-12 Score=123.92 Aligned_cols=178 Identities=13% Similarity=0.062 Sum_probs=130.5
Q ss_pred HHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Q 010630 285 GTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFI 364 (505)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~~r~g~~~~ 364 (505)
|+++.+.+..++...+......+.+.|+.++ ++.+. ....+......+...+..++.|+++||+|||+.
T Consensus 7 ~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~-~g~s~----------~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~ 75 (395)
T PRK10054 7 RSTSALLASSLLLTIGRGATLPFMTIYLSRQ-YSLSV----------DLIGYAMTIALTIGVVFSLGFGILADKFDKKRY 75 (395)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCH----------HHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchh
Confidence 6677777778888888888777888888543 22221 111233334566777888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhcccccchhHHHHH
Q 010630 365 WGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGV 444 (505)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 444 (505)
+..+.++.+++.+++.+.+ +.+..++...+.+.+.+...+...++..|..|+ ++|++++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~ 136 (395)
T PRK10054 76 MLLAITAFASGFIAIPLVN-----------------NVTLVVLFFALINCAYSVFSTVLKAWFADNLSS--TSKTKIFSL 136 (395)
T ss_pred HHHHHHHHHHHHHHHHHHh-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH--hHHHHHHHH
Confidence 9988888888777776663 344455555566666666667778888999988 899999999
Q ss_pred HHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHhccC
Q 010630 445 LNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPR 495 (505)
Q Consensus 445 ~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (505)
.+...++|..++|.+++.+.+ .+ +...|.+.+++.+++.+...+..++
T Consensus 137 ~~~~~~lg~~igp~l~~~l~~-~g--~~~~f~~~~~~~~i~~i~~~~~~~~ 184 (395)
T PRK10054 137 NYTMLNIGWTVGPPLGTLLVM-QS--INLPFWLAAICSAFPLVFIQIWVQR 184 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hc--cCcHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999875 44 5667777777776665555444433
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.8e-11 Score=118.68 Aligned_cols=173 Identities=14% Similarity=0.105 Sum_probs=127.9
Q ss_pred HHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHH--HHHHHHHHHHHHHHHHHHHHHhcchHHH
Q 010630 288 WIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALG--LMLNSVVLGITSVLMEKLCRKWGAGFIW 365 (505)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~g~l~~r~g~~~~~ 365 (505)
+.+....++...+.+....+.+.|+.++. + .+....+ .....+...+.+++.|+++||+|||+.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g------------~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l 79 (400)
T PRK11646 13 YFLLIDNMLVVLGFFVVFPLISIRFVDQL-G------------WAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMI 79 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C------------CcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHH
Confidence 33446666667777777777777774332 2 1222233 3334566667789999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhcccccchhHHHHHH
Q 010630 366 GISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVL 445 (505)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~ 445 (505)
..+..+.+++.+.+...+ +.+.+++...+.|++.+...+...+++.+..|+ +++++++|+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~-----------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~--~~~~~a~~~~ 140 (400)
T PRK11646 80 VTGMLMRAAGFATMAIAH-----------------EPWLLWLSCILSGLGGTLFDPPRTALVIKLIRP--HQRGRFFSLL 140 (400)
T ss_pred HHHHHHHHHHHHHHHHhc-----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH--HHHHHHHHHH
Confidence 999999988888776652 456677777888888877777788899999998 8999999999
Q ss_pred HHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHhccC
Q 010630 446 NLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPR 495 (505)
Q Consensus 446 ~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (505)
+....+|..+||.++|.+. ..| ....|++.++..++..++.....|+
T Consensus 141 ~~~~~~g~~ig~~l~g~l~-~~g--~~~~f~~~~~~~~~~~i~~~~~~~~ 187 (400)
T PRK11646 141 MMQDSAGAVIGALLGSWLL-QYD--FRLVCATGAVLFVLAAAFNAWLLPA 187 (400)
T ss_pred HHHHHHHHHHHHHHHHHHH-Hhh--HHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 9999999999999999998 444 5667777766666655554444554
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.6e-13 Score=129.18 Aligned_cols=179 Identities=13% Similarity=0.129 Sum_probs=129.6
Q ss_pred HHHHHHhhhhHHHHhCCCc--------hhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHH
Q 010630 47 WALQLSLLTPYVQELGIPH--------AWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLI 118 (505)
Q Consensus 47 ~~~~~~~~~~~~~~~g~s~--------~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~ 118 (505)
......+.+.+.++.|.++ .+.+.+.++..+...++.++.|+++| |+|||+.++.+ .+...+...+.
T Consensus 224 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~d----r~g~r~~l~~~-~~~~~v~~~l~ 298 (418)
T TIGR00889 224 LQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLK----RFGIKKVMLLS-LVAWALRFGFF 298 (418)
T ss_pred HHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH----HhCcHHHHHHH-HHHHHHHHHHH
Confidence 3344466677887777554 56789999999999999999999999 99999887774 44455544444
Q ss_pred hcccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHH-HHHHHHHHHHhhcc
Q 010630 119 GLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFS-LFMAVGNILGYATG 197 (505)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~~~g~~ig~~l~ 197 (505)
....+. ....+.+++..++.|++.+...+....++.|.+|+++|+ +++++.+ ...++|..+|+.++
T Consensus 299 ~~~~~~-----------~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g--~~~g~~~~~~~~lg~~iGp~l~ 365 (418)
T TIGR00889 299 AYGDPE-----------YFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRA--SAQGLFTLMCNGFGSLLGYILS 365 (418)
T ss_pred HHcCcc-----------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH--HHHHHHHHHHHhhHHHHHHHHH
Confidence 332110 111244566777888888888888889999999999999 9999997 67889999999999
Q ss_pred ccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCC
Q 010630 198 SFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHD 252 (505)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~ 252 (505)
+.+.... +.....+|+..|.+.+++.+++.++..++.||+.+..+.
T Consensus 366 G~l~~~~---------g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~~~~~ 411 (418)
T TIGR00889 366 GVMVEKM---------FAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHNAIKV 411 (418)
T ss_pred HHHHHHh---------ccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcccCCCC
Confidence 8733211 000001699999999888888888888888887554433
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=2e-11 Score=120.64 Aligned_cols=176 Identities=10% Similarity=0.073 Sum_probs=129.3
Q ss_pred cHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHH-hcch
Q 010630 284 SGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRK-WGAG 362 (505)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~~r-~g~~ 362 (505)
||.++.++...+.-.++++.+..+.+.|+.++ ++.+.. ...+....+.....+..+++|+++|| +|||
T Consensus 13 p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~-lg~~~~----------~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r 81 (489)
T PRK10207 13 PRPFFMIFFVELWERFGYYGVQGILAVFFVKQ-LGFSQE----------QAFITFGAFAALVYGLISIGGYVGDHLLGTK 81 (489)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHH----------HHHHHHHHHHHHHHHHHhhHHHhhhhccchH
Confidence 47778777777777788888888888888544 222211 11222333444455566789999999 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhcccccchhHHH
Q 010630 363 FIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSL 442 (505)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 442 (505)
+++..+.++.+++.+...+.. . ....+++...+.+++.+...+...+++.|.+|+++++++..+
T Consensus 82 ~~~~~g~~~~~~g~~~~~~~~--------------~--~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~ 145 (489)
T PRK10207 82 RTIVLGAIVLAIGYFMTGMSL--------------L--KPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAF 145 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHhc--------------c--chhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcch
Confidence 999999999999888777652 1 122344556677888888888889999999998544678889
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHH
Q 010630 443 GVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLI 488 (505)
Q Consensus 443 g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 488 (505)
+++.+..++|..++|.++|++.+..| +...|++.++..+++.+.
T Consensus 146 ~~~~~~~nig~~~g~~l~g~l~~~~g--w~~~F~i~~i~~~~~~~~ 189 (489)
T PRK10207 146 TLFYMSINIGSLISLSLAPVIADKFG--YSVTYNLCGAGLIIALLV 189 (489)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999986 667787765544444433
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.4e-12 Score=119.03 Aligned_cols=128 Identities=18% Similarity=0.019 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhc
Q 010630 343 VVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSV 422 (505)
Q Consensus 343 ~~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 422 (505)
...++.-++.+++.+|+|+-+++.++..+..+-++.+.... ++|..+..-++-|+..+..+..
T Consensus 417 ~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~-----------------n~W~vLPieilqgit~aliWaa 479 (618)
T KOG3762|consen 417 AGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQ-----------------NPWMVLPIEILQGITHALIWAA 479 (618)
T ss_pred cchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhc-----------------CchheeeHHHHHHHHHHHHHHH
Confidence 34455667888999999999999999999988888877774 6899999999999999999999
Q ss_pred hhHhHhhhhcccccchhHHHHHHHH-HHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHH
Q 010630 423 PYALVSIRTESLGLGQGLSLGVLNL-AIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAIL 491 (505)
Q Consensus 423 ~~~~~~~~~~~~~~~~g~~~g~~~~-~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 491 (505)
.-+++++..|+ +.+.++.|+... ...+|..+|++++|.+.+.+| ....|.++++.+++.+++...
T Consensus 480 ~~sY~s~vaPp--~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg--~~ttf~~~giAcl~~l~~~~~ 545 (618)
T KOG3762|consen 480 IISYASHVAPP--GLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFG--ARTTFRIFGIACLVTLALFIS 545 (618)
T ss_pred HHHHHHhhCCC--cchHHHHHHHHHHhcccCcchhhhhhhhhheeeh--hHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 999999998765 557999999999999999987 566777777666665544443
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.3e-11 Score=120.13 Aligned_cols=178 Identities=10% Similarity=0.110 Sum_probs=133.4
Q ss_pred cHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHH-HhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHH-hcc
Q 010630 284 SGTIWIILIVTALTWLGWFPFLLFDTDWMGRE-IYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRK-WGA 361 (505)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~~r-~g~ 361 (505)
|+.++.+....++..++++....+.+.|+.++ .++.+. ...........+...++.+++|+++|| +||
T Consensus 9 p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~----------~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~ 78 (475)
T TIGR00924 9 PKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQ----------EQAFIIFGAYSALVYLLTSVGWWFGDRVWGT 78 (475)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCH----------HHHHHHHHHHHHHHHHHHhhHHHHHHhhcch
Confidence 46777777777777788888888888887432 012111 122333445677788999999999999 899
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhcccc-cchhH
Q 010630 362 GFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLG-LGQGL 440 (505)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~g~ 440 (505)
|+.+.++.++.+++.+++.+.. +.+..++...+.|++.+...+...+++++.+|+++ ++|++
T Consensus 79 ~~~l~~~~~~~~~g~~~~~~~~-----------------~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~ 141 (475)
T TIGR00924 79 KKTMVLGGIVLMLGHFMLAMSI-----------------YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDG 141 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc-----------------cHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccc
Confidence 9999999999988888776652 24455566677888888888888899999998732 35888
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHH
Q 010630 441 SLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAI 490 (505)
Q Consensus 441 ~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 490 (505)
++++.+...++|..+||.++|++.+..| +...|.+.++..+++.+...
T Consensus 142 ~~~~~~~~~niG~~ig~~l~g~l~~~~g--~~~~f~~~~~~~~~~~l~~~ 189 (475)
T TIGR00924 142 GFTLFYMSINIGSFISPLLAGVIAENYG--YHVGFNLAAVGMVIGLLTFF 189 (475)
T ss_pred eehhHHHHHHHHHHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999876 66778777766655544433
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=7.3e-11 Score=115.85 Aligned_cols=136 Identities=14% Similarity=0.143 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHH
Q 010630 338 LMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLA 417 (505)
Q Consensus 338 ~~~~~~~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 417 (505)
.....+...+++++.|++.||+|+|+.+.++.++.+++.++..+.. +.+.+++...+.|++.+
T Consensus 64 ~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~-----------------~~~~l~~~~~l~g~~~g 126 (434)
T PRK11663 64 ATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSS-----------------SLWAFALLWVLNAFFQG 126 (434)
T ss_pred HHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHh-----------------HHHHHHHHHHHHHHHHH
Confidence 3446777788999999999999999999999999888888777663 45666666677788888
Q ss_pred HHhhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHhcc
Q 010630 418 ITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIP 494 (505)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (505)
...+...+++.+.+|+ ++||+++|+.+....+|..++|.+.+++.+..| +...|.+.+++.++..+...+..+
T Consensus 127 ~~~~~~~~~~~~~~~~--~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~g--w~~~f~~~~i~~~~~~~~~~~~~~ 199 (434)
T PRK11663 127 WGWPVCAKLLTAWYSR--TERGGWWAIWNTAHNVGGALIPLVVGAIALHYG--WRYGMMIAGIIAIVVGLFLCWRLR 199 (434)
T ss_pred ccchHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--HHHHHHHHHHHHHHHHHHHHHHcC
Confidence 7777888999999998 899999999999999999999999999998866 666777766655544444444433
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.4e-12 Score=123.69 Aligned_cols=162 Identities=12% Similarity=0.069 Sum_probs=117.4
Q ss_pred HHHHHHHHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHHhccccc
Q 010630 45 FGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADI 124 (505)
Q Consensus 45 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~ 124 (505)
........++|.+.++.|.+..+.+.+.+...++..++.++.|+++| |+|||+.+.. ..+...++.......++.
T Consensus 234 ~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~g~~~~~~~-~~~~~~~~~~~~~~~~~~ 308 (406)
T PRK11551 234 IVLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMD----RLRPRRVVLL-IYAGILASLAALAAAPSF 308 (406)
T ss_pred HHHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHH----HHhHHHHHHH-HHHHHHHHHHHHHhcCcH
Confidence 34445556788888889999999999999999999999999999999 9999987765 333334444444333332
Q ss_pred ccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhhccccccccc
Q 010630 125 GWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFK 204 (505)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l~~~~~~~~ 204 (505)
+.+.+..++.|++.+...+...++..|.+|+++|+ ++.++.+....+|..+|+.+++.+....
T Consensus 309 ---------------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g--~~~g~~~~~~~~g~~~g~~~~g~l~~~~ 371 (406)
T PRK11551 309 ---------------AGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRG--TGVGAAVAVGRLGSMAGPLLAGQLLALG 371 (406)
T ss_pred ---------------HHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhh--hhhhHHHHhhhHHHHHHhhhHhhhhccC
Confidence 34445555667776667778889999999999999 9999999999999999999988743211
Q ss_pred cccccccccccccccchhHHHHHHHHHHHHHHHHhhhc
Q 010630 205 ILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASA 242 (505)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 242 (505)
.++...++......++..+..++.
T Consensus 372 --------------~~~~~~~~~~~~~~~~~~~~~~~~ 395 (406)
T PRK11551 372 --------------RSTVGVIGASIPVILVAALAALLL 395 (406)
T ss_pred --------------CchHHHHHHHHHHHHHHHHHHHHH
Confidence 155556665554444444444433
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.37 E-value=4e-10 Score=102.20 Aligned_cols=277 Identities=13% Similarity=0.126 Sum_probs=160.3
Q ss_pred HHHHHHHHHHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHHhccc
Q 010630 43 IQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSA 122 (505)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~ 122 (505)
...+...+.+|+-...++.|++..+++.+........++..++.|.++| |+|||+..++.+.+- .++.+.. ..+
T Consensus 46 a~~aDWLQGpY~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD----~~Grk~~cl~~cily-~~scl~k-~~~ 119 (354)
T PF05631_consen 46 AMAADWLQGPYLYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLAD----RYGRKKACLLFCILY-SLSCLTK-HSS 119 (354)
T ss_pred HHHHHHhhcchhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCchHHHHHHHHHH-HHHHHHH-hcc
Confidence 3456677777776666889999999999999999999999999999999 999999888755554 4444333 334
Q ss_pred ccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHh-hhcccc----cccchhhHhHHHH-HHHHHHHHHHhhc
Q 010630 123 DIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALL-ADLTGK----DHRRTRVANAYFS-LFMAVGNILGYAT 196 (505)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~-~~~~~~----~~r~~~~~~~~~~-~~~~~g~~ig~~l 196 (505)
++ ..++++|++.|++.+....+..+|. .|.-.. +..+ ..++... ..+++-.++++.+
T Consensus 120 ~~---------------~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~--~tF~~~tf~~n~~vAI~aGv~ 182 (354)
T PF05631_consen 120 NY---------------PVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLS--DTFSLATFFGNGVVAIGAGVV 182 (354)
T ss_pred cc---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH--HHHHHHHHHHhHHHHHHHhHH
Confidence 44 8899999999999999999988775 444222 1122 2222222 1222333333333
Q ss_pred cccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCCCCCcchHHHHHHHH
Q 010630 197 GSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWEL 276 (505)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (505)
+.++.. ..+.+...+|....++..+..++.....+|++.+..+. .+..+..++-
T Consensus 183 a~~l~~-------------~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~~~~~-------------~~~~~~~~~a 236 (354)
T PF05631_consen 183 ANVLAD-------------WFGFGPVAPFDAAIVLLAVAAVLILKTWPENYGDTSSS-------------SSLSGSFREA 236 (354)
T ss_pred HHHHHH-------------HhCCCCcchHHHHHHHHHHHHHHHHhcccccCCCcccc-------------cchHHHHHHH
Confidence 332111 01114466788888777777777776777765543211 0112223333
Q ss_pred HHHHhcccHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 010630 277 FGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLC 356 (505)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~ 356 (505)
.+.+++ +|+.+.+.+++.+.-...+.+...-++-+. . +. .+...|.+ .....+..++|+.+..++.
T Consensus 237 ~~~i~~-d~ril~LG~~qslFE~smy~FVflWtPaL~----~-~~-------~~~P~GlI-FssFM~a~MlGS~lf~~l~ 302 (354)
T PF05631_consen 237 WRAILS-DPRILLLGLIQSLFEGSMYLFVFLWTPALD----P-DD-------EELPLGLI-FSSFMVAMMLGSSLFSRLL 302 (354)
T ss_pred HHHHHc-CchhHHHHHHHHHHHHHHHHheeeeeceec----C-CC-------CCCCchHH-HHHHHHHHHHHHHHHHHHH
Confidence 333333 277777777776666554444433233321 0 00 01121212 2223455677777776655
Q ss_pred HH-hcchHHHHHHHHHHHHHHHHHHHH
Q 010630 357 RK-WGAGFIWGISNILMALCFLAMLIL 382 (505)
Q Consensus 357 ~r-~g~~~~~~~~~~~~~~~~~~~~~~ 382 (505)
.| ......+.....+.++++..-.+.
T Consensus 303 s~~~~~e~~l~~v~~~aa~~l~~pv~~ 329 (354)
T PF05631_consen 303 SKSLRPESLLRYVFAVAAVSLAIPVVT 329 (354)
T ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 333344444454554555444443
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.8e-11 Score=114.47 Aligned_cols=140 Identities=13% Similarity=0.104 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHH
Q 010630 338 LMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLA 417 (505)
Q Consensus 338 ~~~~~~~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 417 (505)
.....+...++.++.|++.||+|||+.+..+.++.+++.+.....+ +.+..++..++.|++.+
T Consensus 46 ~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~l~g~~~~ 108 (385)
T TIGR00710 46 LTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSN-----------------NIETLLVLRFVQAFGAS 108 (385)
T ss_pred HHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHc-----------------cHHHHHHHHHHHHcchh
Confidence 3445677788899999999999999999999888888887776653 45667777888899998
Q ss_pred HHhhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHhccCCC
Q 010630 418 ITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPRSS 497 (505)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (505)
...+...+++.|..|+ ++|++.+|+.+....++..++|.+++.+.+..+ +...+.+.++..++..+...+..||++
T Consensus 109 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (385)
T TIGR00710 109 AGSVISQALVRDIYPG--EELSRIYSILMPVLALAPAVAPLLGGYILVWLS--WHAIFAFLSLAGILLSALIFFILPETL 184 (385)
T ss_pred HHHHHHHHHHHHhcCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 8888889999999998 999999999999999999999999999998865 566777766666666655555555544
Q ss_pred C
Q 010630 498 A 498 (505)
Q Consensus 498 ~ 498 (505)
+
T Consensus 185 ~ 185 (385)
T TIGR00710 185 P 185 (385)
T ss_pred C
Confidence 3
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.36 E-value=6e-11 Score=113.87 Aligned_cols=139 Identities=10% Similarity=-0.014 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHH
Q 010630 338 LMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLA 417 (505)
Q Consensus 338 ~~~~~~~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 417 (505)
.....+...++.++.|+++||+|||+.+..+.++..++..+..+...... .+.+.+++...+.|++.+
T Consensus 40 ~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~l~g~~~~ 107 (365)
T TIGR00900 40 ALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGG------------LNIWQVYVLAGILAIAQA 107 (365)
T ss_pred HHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCC------------CcHHHHHHHHHHHHHHHH
Confidence 34467777888999999999999999999988887777766655531100 145667777888899999
Q ss_pred HHhhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHh
Q 010630 418 ITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILA 492 (505)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 492 (505)
...+...+++.|..|+ ++|++.+|..+....+|..++|.+++.+.+..| ....|.+.++..+++.+.....
T Consensus 108 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~ 178 (365)
T TIGR00900 108 FFTPAYQAMLPDLVPE--EQLTQANSLSQAVRSLFYIVGPGIGGLMYATLG--IKWAIWVDAVGFAISALLIVSV 178 (365)
T ss_pred HHHHHHHHHHHhcCCH--HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHHhc
Confidence 8888899999999998 899999999999999999999999999998876 5566766666555555444433
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.1e-10 Score=113.65 Aligned_cols=179 Identities=12% Similarity=0.107 Sum_probs=125.4
Q ss_pred cHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHh-cch
Q 010630 284 SGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKW-GAG 362 (505)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~~r~-g~~ 362 (505)
|+.++.++...+...++++.+..+.+.|+.+. ++.+.. ........+.....++.+++|+++||+ |||
T Consensus 8 p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~-lgls~~----------~a~~i~~~~~~~~~l~~ligG~LaDRilGrr 76 (493)
T PRK15462 8 PRAIYYVVALQIWEYFSFYGMRALLILYLTNQ-LKYDDN----------HAYELFSAYCSLVYVTPILGGFLADKVLGNR 76 (493)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHccCcH
Confidence 36677777777777777788888888888543 222211 122333445566677889999999999 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhcccccchhHHH
Q 010630 363 FIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSL 442 (505)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 442 (505)
+.+.++.++.+++.+++.... . ......+...+..++.+...+...++++|.+|+++++|++++
T Consensus 77 r~iliG~il~~lg~lll~~~~--------------~--~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf 140 (493)
T PRK15462 77 MAVMLGALLMAIGHVVLGASE--------------I--HPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGF 140 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHhh--------------c--chhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCcccccee
Confidence 999999988888876554321 0 112223333344455666666677899999998545788899
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHH
Q 010630 443 GVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAIL 491 (505)
Q Consensus 443 g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 491 (505)
++.....++|..++|.+.|++.+..| +...|.++++..+++.+....
T Consensus 141 ~i~Y~~~nlG~~iap~l~g~L~~~~G--w~~~F~iaaigm~l~li~~~~ 187 (493)
T PRK15462 141 SLMYAAGNVGSIIAPIACGYAQEEYS--WAMGFGLAAVGMIAGLVIFLC 187 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhC--hHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998876 667787777666665544433
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.4e-11 Score=113.49 Aligned_cols=180 Identities=9% Similarity=-0.021 Sum_probs=133.4
Q ss_pred HHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Q 010630 285 GTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFI 364 (505)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~~r~g~~~~ 364 (505)
+.++.+....+.............+.+. ++ ++.+.. ...+......+...++.++.|++.||+|||+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~-~g~s~~----------~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~ 70 (382)
T PRK10091 3 KVILSLALGTFGLGMAEFGIMGVLTELA-HD-VGISIP----------AAGHMISYYALGVVVGAPIIALFSSRYSLKHI 70 (382)
T ss_pred chHHHHHHHHHHHHhhHHHHHhChHHHH-HH-cCCCHH----------HHhHHHHHHHHHHHHHHHHHHHHHccCccHHH
Confidence 5666666666666665555555555543 22 232211 11233445677888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhcccccchhHHHHH
Q 010630 365 WGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGV 444 (505)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 444 (505)
+..+..+.+++.++..+.+ +.+.+++...+.|++.+...+....++.+..|+ ++++++++.
T Consensus 71 ~~~~~~~~~~~~~l~~~~~-----------------~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 131 (382)
T PRK10091 71 LLFLVALCVIGNAMFTLSS-----------------SYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKP--GKVTAAVAG 131 (382)
T ss_pred HHHHHHHHHHHHHHHHHhC-----------------cHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCh--HHhhHHHHH
Confidence 9999999988888777663 467777888899998888777777888898888 889999999
Q ss_pred HHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHhccCCC
Q 010630 445 LNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPRSS 497 (505)
Q Consensus 445 ~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (505)
......++..++|.+++.+.+..| +...|.+.++..++..+...+..|+.+
T Consensus 132 ~~~~~~~g~~~g~~l~~~l~~~~g--wr~~f~~~~~~~~~~~~~~~~~lp~~~ 182 (382)
T PRK10091 132 MVSGMTVANLLGIPLGTYLSQEFS--WRYTFLLIAVFNIAVLASIYFWVPDIR 182 (382)
T ss_pred HHHHHHHHHHHhccHHHHHhhhcc--HHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 999999999999999999988765 567787777766666555555556543
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.4e-10 Score=112.13 Aligned_cols=137 Identities=15% Similarity=0.118 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHH
Q 010630 339 MLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAI 418 (505)
Q Consensus 339 ~~~~~~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 418 (505)
....+...+++++.|++.||+|||+.+..+.++.+++.++..+.. +.+..++...+.|++.+.
T Consensus 62 ~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~-----------------~~~~l~~~r~l~G~~~g~ 124 (394)
T PRK10213 62 TVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFAN-----------------SFSLLLIGRACLGLALGG 124 (394)
T ss_pred HHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHC-----------------hHHHHHHHHHHHHHhhHH
Confidence 345677778899999999999999999999999988877766652 467788888899999999
Q ss_pred HhhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHhccCC
Q 010630 419 TYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPRS 496 (505)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (505)
..+...+++.|.+|+ ++++++.++......++..++|.+++.+.+..| +...|.+.+++.++..+......|+.
T Consensus 125 ~~~~~~~~i~~~~~~--~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~g--w~~~f~~~~~l~~~~~l~~~~~~p~~ 198 (394)
T PRK10213 125 FWAMSASLTMRLVPP--RTVPKALSVIFGAVSIALVIAAPLGSFLGELIG--WRNVFNAAAVMGVLCIFWIIKSLPSL 198 (394)
T ss_pred HHHHHHHHHHHHcCH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--HHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 888899999999998 999999999999999999999999999999876 56677776665555544444444543
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.1e-10 Score=111.51 Aligned_cols=138 Identities=21% Similarity=0.189 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhH
Q 010630 336 LGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGP 415 (505)
Q Consensus 336 ~~~~~~~~~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 415 (505)
+......+...++.++.|+++||+|||+.+..+.++.+++..+..+.. +.+..++..++.|++
T Consensus 36 ~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~l~g~~ 98 (352)
T PF07690_consen 36 LLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFAS-----------------NFWLLLIARFLLGIG 98 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHC-----------------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhh-----------------hHHHHhhhccccccc
Confidence 334446777889999999999999999999999998888844444331 345788888899999
Q ss_pred HHHHhhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHhcc
Q 010630 416 LAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIP 494 (505)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (505)
.+...+...+++.|..|+ ++|++.+++.+....+|..++|.+++.+.+..+ ....|++.+++.+++.++...+.+
T Consensus 99 ~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~--~~~~~~~~~~~~~~~~il~~~~~~ 173 (352)
T PF07690_consen 99 SGFFSPASNALIADWFPP--EERGRAFGILSAGFSLGSILGPLLGGFLISYFG--WRWAFLISAILSLIAAILFILFLP 173 (352)
T ss_dssp HHHHHHHHHHHHHHCCCT--CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCH--HCCHHHHHHHHHHHHHHHHHCCC-
T ss_pred cccccccccccccccchh--hhhhhccccccchhhhhhhcccchhhhhhhccc--cccccccccchhhhhhhhHhhhhh
Confidence 999999999999999998 899999999999999999999999999998765 566788888777777664334433
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.5e-10 Score=115.30 Aligned_cols=179 Identities=12% Similarity=0.025 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Q 010630 285 GTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFI 364 (505)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~~r~g~~~~ 364 (505)
+.++.+....++............+.+.. + ++.++. ...+....+.+...++.++.|+++||+|||+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~-~g~s~~----------~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~ 77 (471)
T PRK10504 10 WQLWIVAFGFFMQSLDTTIVNTALPSMAQ-S-LGESPL----------HMHMVIVSYVLTVAVMLPASGWLADRVGVRNI 77 (471)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHH-H-hCcCHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 45566666666666555555556666653 2 332211 11233344566667888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhcccccchhHHHHH
Q 010630 365 WGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGV 444 (505)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 444 (505)
+..+..+.+++.++..+.. +.+..++..++.|++.+...+...+++.|..|+ +++++++|+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~-----------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 138 (471)
T PRK10504 78 FFTAIVLFTLGSLFCALSG-----------------TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPR--EQYMAAMTF 138 (471)
T ss_pred HHHHHHHHHHHHHHHHHhC-----------------CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCH--HHHHHHHHH
Confidence 9988888777776655442 356677778889999998888888999999998 899999999
Q ss_pred HHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHhccCC
Q 010630 445 LNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPRS 496 (505)
Q Consensus 445 ~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (505)
.+....++..++|.++|.+.+..| +...|.+......++.+......++.
T Consensus 139 ~~~~~~~g~~~g~~~~g~l~~~~g--w~~~f~~~~~~~~l~~~~~~~~~~~~ 188 (471)
T PRK10504 139 VTLPGQVGPLLGPALGGLLVEYAS--WHWIFLINIPVGIIGAIATLMLMPNY 188 (471)
T ss_pred HHHHHHHHHHhhhHHHHHHHhhcc--HHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 999999999999999999999865 56677776666666665555554443
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.9e-10 Score=111.38 Aligned_cols=136 Identities=15% Similarity=0.061 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHH
Q 010630 340 LNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAIT 419 (505)
Q Consensus 340 ~~~~~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 419 (505)
.+.+...++.+..|++.||+|||+.+..+..+.+++.+...+.+ +.+.+++...+.|++.+..
T Consensus 52 ~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~-----------------~~~~l~~~r~~~G~~~~~~ 114 (390)
T PRK03545 52 IYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAW-----------------NFTVLLISRIGIAFAHAIF 114 (390)
T ss_pred HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhc-----------------cHHHHHHHHHHHHHHHHHH
Confidence 45566677888899999999999999999998888888777763 4677777778888888887
Q ss_pred hhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHhccCC
Q 010630 420 YSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPRS 496 (505)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (505)
.+...+++.|..|+ ++|++++|+.+....++..++|.+++.+.+..| +...|.+.+++.++..+......|+.
T Consensus 115 ~~~~~~~i~~~~~~--~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~g--w~~~f~~~~~~~~l~~~~~~~~~~~~ 187 (390)
T PRK03545 115 WSITASLAIRVAPA--GKKAQALSLLATGTALAMVLGLPLGRVIGQYLG--WRTTFLAIGGGALITLLLLIKLLPLL 187 (390)
T ss_pred HHHHHHHHHHhCCh--hhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhc--HHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 78888999999998 899999999999999999999999999998876 66778777777666655555545543
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.7e-10 Score=104.91 Aligned_cols=138 Identities=14% Similarity=0.090 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhH
Q 010630 336 LGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGP 415 (505)
Q Consensus 336 ~~~~~~~~~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 415 (505)
.....++.+..+++++...+.||+.||+++.....++.++-++..+.. +.+.+++.-++.|+.
T Consensus 52 ~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp-----------------~f~~Ll~aR~~~g~a 114 (394)
T COG2814 52 QLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAP-----------------SFAVLLLARALAGLA 114 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhc-----------------cHHHHHHHHHHHHHH
Confidence 444458888999999999999999999999999999999999998884 578889999999999
Q ss_pred HHHHhhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHhcc
Q 010630 416 LAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIP 494 (505)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (505)
.|...++..++..+++|+ ++|+++.++......++..+|.+++.++-|.+| ++..|.+.+.+.+++.+..+...|
T Consensus 115 ~G~f~~i~~~~a~~lvpp--~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~G--WR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 115 HGVFWSIAAALAARLVPP--GKRGRALALVFTGLTLATVLGVPLGTFLGQLFG--WRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred HHHHHHHHHHHHHHHcCc--cchhhHHHHHHHHHHHHHHHhccHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999 999999999999999999999999999999998 788999999899888888888888
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.3e-11 Score=121.70 Aligned_cols=165 Identities=15% Similarity=0.151 Sum_probs=118.7
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCC--CCcchhHH-HHHHHHHHH
Q 010630 38 SVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRF--GRRRPFIV-CGAISIAVA 114 (505)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~--Grr~~~~~-~~~~~~~~~ 114 (505)
...+...+++.....++++|.++.|.+..+.+++.++..++..+++++.|+++| |. ++|+..++ .+.+....+
T Consensus 248 ~~~~l~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d----~~~~~~~~~~~~~~~~~~~~l~ 323 (455)
T TIGR00892 248 SGNVIMFLGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAG----LKWIRPHVQYLFSFALLFNGLT 323 (455)
T ss_pred HHHHHHHHHccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc----ccccCHHHHHHHHHHHHHHHHH
Confidence 333344445555566788888889999999999999999999999999999999 53 33333332 222222233
Q ss_pred HHHHhcccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHh
Q 010630 115 VLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGY 194 (505)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~ 194 (505)
.++....++. +.+++...+.|++.+...+...+++.|.+|+++++ +.+++.+...++|..+|+
T Consensus 324 ~ll~~~~~~~---------------~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g--~~~g~~~~~~~lg~~igp 386 (455)
T TIGR00892 324 HLLCALAGDY---------------TGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFS--SAVGLVTIVECCAVLIGP 386 (455)
T ss_pred HHHHHHhchH---------------HHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHh--hHHhHHHHHHHHHHHccc
Confidence 3333333332 55666777888888888888899999999999999 999999999999999999
Q ss_pred hccccccccccccccccccccccccchhHHHHHHHHHHHHHHH
Q 010630 195 ATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTC 237 (505)
Q Consensus 195 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~ 237 (505)
.+++.+.... ++|++.|++.+++.++..+
T Consensus 387 ~i~G~l~~~~--------------g~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 387 PLAGRLVDAT--------------KNYKYIFYASGSIVVSAGL 415 (455)
T ss_pred cceeeeehhc--------------CCcchHHHHhhHHHHHHHH
Confidence 9988733211 2588888887766555444
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.4e-11 Score=120.07 Aligned_cols=176 Identities=20% Similarity=0.205 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHhhhhHH-HHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHHhc
Q 010630 42 GIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGL 120 (505)
Q Consensus 42 ~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~ 120 (505)
.....++....++|.++ +++|.+..+.++......++..++.++.|+++| |+|||+.++.......+.+..++..
T Consensus 261 ~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~grr~~~~~~~~~~~~~~~~~~~~ 336 (490)
T PRK10642 261 ATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSD----RFGRRPFVILGSVALFVLAIPAFIL 336 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhccHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666677889887 567999888888878888888999999999999 9999987766443333333322211
Q ss_pred ccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhhccccc
Q 010630 121 SADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFS 200 (505)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l~~~~ 200 (505)
..+ .....+++++++.+++.+...+....+++|++|++.|+ .+.+.......++..+++.+.+++
T Consensus 337 ~~~-------------~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg--~~~g~~~~~~~~~g~~~p~i~g~l 401 (490)
T PRK10642 337 INS-------------NVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRY--SALAAAFNISVLVAGLTPTLAAWL 401 (490)
T ss_pred HhC-------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccch--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 01144556666777766666677788899999999999 777764333444556666665542
Q ss_pred cccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCC
Q 010630 201 GWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSH 251 (505)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~ 251 (505)
.... .+|+..+++..+..++..+ ..+++||+|++..
T Consensus 402 ~~~~--------------~~~~~~~~~~~~~~~i~~~-~~~~~pes~~~~~ 437 (490)
T PRK10642 402 VEST--------------QNLMMPAYYLMVVAVIGLI-TGVTMKETANRPL 437 (490)
T ss_pred HHHh--------------CCchHHHHHHHHHHHHHHH-HHHHhccccCCCC
Confidence 1110 1455555554444444333 4456699877644
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.2e-10 Score=111.60 Aligned_cols=141 Identities=12% Similarity=-0.012 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHH
Q 010630 338 LMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLA 417 (505)
Q Consensus 338 ~~~~~~~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 417 (505)
...+.+...++.++.|++.||+|||+.+..+.++.+++..+..+.. +.+.+++.-.+.|++.+
T Consensus 49 ~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~-----------------~~~~l~~~r~l~G~~~~ 111 (412)
T TIGR02332 49 ATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFAT-----------------GPESLYLLRILVGIAEA 111 (412)
T ss_pred HHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhc-----------------CHHHHHHHHHHHHHHHh
Confidence 3345667788889999999999999999999999988888877763 45677778889999999
Q ss_pred HHhhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhh----cCCCchHHHHHHHHHHHHHHHHHHhc
Q 010630 418 ITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLF----GGGNSPAFAVGGISALAGGLIAILAI 493 (505)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (505)
...+....++.|.+|+ ++||+.+|+++....+|..+++.+++++.+.. ..+.+..|.+.++..++..++.+++.
T Consensus 112 ~~~~~~~~~~~~~~~~--~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~ 189 (412)
T TIGR02332 112 GFLPGILLYLTFWFPA--YFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWL 189 (412)
T ss_pred hHHHHHHHHHHHHcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhcc
Confidence 8888888889999998 89999999999999999999999999887531 01356778777766666555555555
Q ss_pred cCCC
Q 010630 494 PRSS 497 (505)
Q Consensus 494 ~~~~ 497 (505)
||++
T Consensus 190 ~~~p 193 (412)
T TIGR02332 190 DDSP 193 (412)
T ss_pred CCCc
Confidence 5543
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.9e-11 Score=117.33 Aligned_cols=167 Identities=13% Similarity=0.048 Sum_probs=124.5
Q ss_pred HHHHhhhhHHHH-hCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHHhcccccccc
Q 010630 49 LQLSLLTPYVQE-LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWL 127 (505)
Q Consensus 49 ~~~~~~~~~~~~-~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (505)
....+.|.+.++ +|.+..+.+++.+...++..++.++.|++.| |.++++.+.. +.+...++.++..+.++.
T Consensus 241 ~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~----~~~~~~~l~~-~~~~~~~~~~~~~~~~~~--- 312 (417)
T PRK10489 241 AVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAH----SARPGLLMLL-STLGSFLAVGLFGLMPMW--- 312 (417)
T ss_pred hHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhh----ccCcchHHHH-HHHHHHHHHHHHHccchH---
Confidence 344567888776 8999999999999999999999999999999 8666655555 444455555555444432
Q ss_pred cCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhhcccccccccccc
Q 010630 128 LGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILP 207 (505)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l~~~~~~~~~~~ 207 (505)
+...+..++.|++.+...+...+++.|..|++.|+ +++++......+|..+|+.+.+.+....
T Consensus 313 ------------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g--~~~g~~~~~~~~g~~~g~~l~G~l~~~~--- 375 (417)
T PRK10489 313 ------------ILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLG--RINGLWTAQNVTGDAIGAALLGGLGAMM--- 375 (417)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHH--HHHHHHHHHHhhhHhHHHHHHHHHHHHh---
Confidence 44555666777777776677788999999999999 9999999999999999999988743322
Q ss_pred ccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCC
Q 010630 208 FTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHD 252 (505)
Q Consensus 208 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~ 252 (505)
+.+..+...+++..+..++....++|.++.+.+
T Consensus 376 ------------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (417)
T PRK10489 376 ------------TPVASASASGFGLLIIGVLLLLVLGELRRFRQT 408 (417)
T ss_pred ------------chhhHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 667777777777666666666777776554433
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.5e-10 Score=114.23 Aligned_cols=187 Identities=18% Similarity=0.145 Sum_probs=134.4
Q ss_pred HHHhcccHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010630 278 GTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCR 357 (505)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~~ 357 (505)
..+|+ |.|+.+.....+..++......-.+-++. +. ..+ .... .+......+..++.+++.|.+.|
T Consensus 5 aplr~--~~Fr~lw~a~~iS~lG~~~~~va~~wlv~-~l-t~S---------~~~v-alv~~a~~LP~~Llsl~aG~laD 70 (524)
T PF05977_consen 5 APLRN--RNFRRLWIAQLISNLGDWMQTVALAWLVT-QL-TGS---------PLMV-ALVQAASTLPILLLSLFAGALAD 70 (524)
T ss_pred ccccC--chHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-hCC---------HHHH-HHHHHHHHHHHHHHHHHHHHHhh
Confidence 34566 78888888888887775555444443332 11 000 1011 12223345666788899999999
Q ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhcccccc
Q 010630 358 KWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLG 437 (505)
Q Consensus 358 r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 437 (505)
|++||++++.+-++.++..+.+.+..... ..+.+.+++..++.|++.....+..++++.+++|+ ++
T Consensus 71 r~drrrili~~~~~~~~~~~~L~~l~~~~------------~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~--~~ 136 (524)
T PF05977_consen 71 RFDRRRILILSQLLRALVALLLAVLAFFG------------LLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPK--ED 136 (524)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHhC------------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH--hh
Confidence 99999999988877766555544432111 11567788888999999999999999999999999 89
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHhcc
Q 010630 438 QGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIP 494 (505)
Q Consensus 438 ~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (505)
...+.++.++..++...+||.++|.+....| ....|.+-+++.+++.+.....++
T Consensus 137 L~~A~al~s~~~niar~iGPalgG~Lva~~G--~~~~f~inalsfl~~i~~l~~~~~ 191 (524)
T PF05977_consen 137 LPAANALNSISFNIARIIGPALGGILVAFFG--AAAAFLINALSFLISILALLRWKP 191 (524)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHccc
Confidence 9999999999999999999999999999887 566787777766665544444433
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.30 E-value=9.8e-12 Score=119.90 Aligned_cols=156 Identities=17% Similarity=0.189 Sum_probs=115.8
Q ss_pred HHHHHHHHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHHhccccc
Q 010630 45 FGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADI 124 (505)
Q Consensus 45 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~ 124 (505)
+.......+.+++.+++|.+..+.+.+.+...+...++.++.|+++| |+|||+.+.. +.+...++.+...+.++.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~g~~~~~~~-~~~~~~~~~~~~~~~~~~ 293 (377)
T TIGR00890 219 VSGLLLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSD----KIGRQKTMSI-VFGISAVGMAAMLFIPML 293 (377)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhhhhhhH-HHHHHHHHHHHHHHcccc
Confidence 33334445667778889999999999999999999999999999999 9999987766 444455555444443321
Q ss_pred ccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhhccccccccc
Q 010630 125 GWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFK 204 (505)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l~~~~~~~~ 204 (505)
..........+.+++.+...+...+++.|.+|+++|+ ++.++.+....+|..+++.+.+.+....
T Consensus 294 -------------~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~--~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 358 (377)
T TIGR00890 294 -------------NDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSA--ANYGFLYTAKAVAGIFGGLIASHALTEI 358 (377)
T ss_pred -------------hhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhh--hHhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 0122334445566777777777788999999999999 9999999999999999999888743322
Q ss_pred cccccccccccccccchhHHHHHHHHHHHHH
Q 010630 205 ILPFTLTSACNVDCANLKSAFFLDVIFIAIT 235 (505)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 235 (505)
+|++.|.+.+++.++.
T Consensus 359 ---------------g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 359 ---------------GFEYTFIVTGAFALTS 374 (377)
T ss_pred ---------------chhhHHHHHHHHHHHh
Confidence 7888888877655543
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.7e-11 Score=114.48 Aligned_cols=184 Identities=11% Similarity=-0.011 Sum_probs=127.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHH
Q 010630 31 RKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAIS 110 (505)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~ 110 (505)
++.+......+.....+.....++|+++++.|.+..+.+...+...++..++.++.|++.| |+|||+..+. +..+
T Consensus 205 ~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~----r~~~~~~~~~-~~~l 279 (393)
T PRK09705 205 PRAWTLGVYFGLINGGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMAR----HQDRRKLLML-ALVL 279 (393)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHh----hccchHHHHH-HHHH
Confidence 3344444444444456666677889998889999999999999999999999999999999 9999987766 4444
Q ss_pred HHHHHHHHhcccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhccc-ccccchhhHhHHHHHHHHHH
Q 010630 111 IAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTG-KDHRRTRVANAYFSLFMAVG 189 (505)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~~~g 189 (505)
...+..+....+.. . ... ...+.|++.+...+.......|..+ +++++ +..++.+....++
T Consensus 280 ~~~~~~~~~~~~~~------------~--~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g--~~~g~~~~~~~~~ 341 (393)
T PRK09705 280 QLVGFCGFIWLPLQ------------L--PVL--WAMVCGLGLGGAFPLCLLLALDHSVQPAIAG--KLVAFMQGIGFII 341 (393)
T ss_pred HHHHHHHHHHccch------------H--HHH--HHHHHHHhccchHHHHHHHHHhhcCCHHHHH--HHHHHHHHHHHHH
Confidence 44444433222211 0 111 1234466666666766667677775 56778 8999999999999
Q ss_pred HHHHhhccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCC
Q 010630 190 NILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSH 251 (505)
Q Consensus 190 ~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~ 251 (505)
..++|.+.+++.... +++...|.+.++.+++..++...+.||+++++.
T Consensus 342 ~~~gp~~~G~l~~~~--------------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (393)
T PRK09705 342 AGLAPWFSGVLRSIS--------------GNYLMDWAFHALCVVGLMIITLRFAPARFPQLW 389 (393)
T ss_pred HHHHHHHHHHHHHHh--------------CCchHHHHHHHHHHHHHHHHHHHhccccccchh
Confidence 999999988743322 257777888777777776666777777765544
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.5e-10 Score=109.68 Aligned_cols=139 Identities=12% Similarity=0.039 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHH
Q 010630 338 LMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLA 417 (505)
Q Consensus 338 ~~~~~~~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 417 (505)
.....+...++.++.|+++||+|||+.+..+.++..++..+..... +.+..++...+.|++.+
T Consensus 44 ~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~-----------------~~~~~~~~~~l~g~~~~ 106 (392)
T PRK10473 44 FSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAE-----------------TSSLFLAGRFLQGIGAG 106 (392)
T ss_pred HHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhC-----------------cHHHHHHHHHHHHhhhh
Confidence 3345666778889999999999999999998888888777766552 34556666778888888
Q ss_pred HHhhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHhccCCC
Q 010630 418 ITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPRSS 497 (505)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (505)
...+..++++.|..|+ ++|++..+..+....++..++|.+++.+.+..+ +...+.+.+++.++..++.+...||++
T Consensus 107 ~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g--~~~~~~~~~~~~~i~~~~~~~~~~~~~ 182 (392)
T PRK10473 107 CCYVVAFAILRDTLDD--RRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFP--WQSLFYTMAAMGILVLLLSLFILKETR 182 (392)
T ss_pred HHHHHHHHHHHHHcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC--hHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 8788888999999998 999999999999999999999999998887755 556677777666666666555555543
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.6e-10 Score=110.31 Aligned_cols=174 Identities=16% Similarity=0.118 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Q 010630 285 GTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFI 364 (505)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~~r~g~~~~ 364 (505)
|+++.++...++..++........+... ++ ++.++ ....+....+.+...+..++.|++.||+|||++
T Consensus 3 ~~f~~l~~~~~~~~~~~~~~~~~~~~~~-~~-~~~s~----------~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~v 70 (393)
T PRK11195 3 KGFYAIMAAQFFSALADNALLFAAIALL-KE-LHYPD----------WSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRV 70 (393)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-cCCcH----------HHHHHHHHHHHHHHHHHHhhhhHhhhccCCchh
Confidence 5677777777776664433333333332 22 11111 111233444667788889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhcccccchhHHHHH
Q 010630 365 WGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGV 444 (505)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 444 (505)
+..+.++.+++.+.+.... +. ++..++.|++.+...+...+++.|.+|+ +++++++|+
T Consensus 71 l~~~~~~~~~~~~~~~~~~-----------------~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~--~~~~~a~~~ 128 (393)
T PRK11195 71 MFIANGIKLLGCLLMLFGI-----------------HP---LLAYGLVGIGAAAYSPAKYGILTELLPG--EKLVKANGW 128 (393)
T ss_pred hHHHHHHHHHHHHHHHHHH-----------------HH---HHHHHHHHHHHHHHHHHHHHHHHHHcCH--HHHHHHHHH
Confidence 9999988887766655442 22 4455678999999999999999999999 999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHhccCC
Q 010630 445 LNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPRS 496 (505)
Q Consensus 445 ~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (505)
.+....++..+||.++|.+.+.. ....+.+.+.+.+++. +..+..||.
T Consensus 129 ~~~~~~~~~~~Gp~lgG~l~~~~---~~~~~~i~~~~~~~~~-~~~~~l~~~ 176 (393)
T PRK11195 129 MEGSTIAAILLGTVLGGALADPH---AEAALAVCALIYLLAA-LFNLFIPRL 176 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH-HHHhcCCCC
Confidence 99999999999999999999863 2334444443333333 233444543
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.8e-10 Score=113.19 Aligned_cols=175 Identities=12% Similarity=0.073 Sum_probs=124.1
Q ss_pred cHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHH-hcch
Q 010630 284 SGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRK-WGAG 362 (505)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~~r-~g~~ 362 (505)
|+.++..+...++..++++.+..+.+.|+.++ ++.+... ................++.|+++|| +|||
T Consensus 20 p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~-lg~s~~~----------a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r 88 (500)
T PRK09584 20 PKAFYLIFSIELWERFGYYGLQGIMAVYLVKQ-LGMSEAD----------SITLFSSFSALVYGLVAIGGWLGDKVLGTK 88 (500)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHH----------HHHHHHHHHHHHHHHHHHHHHHHHhccchH
Confidence 35688888888888888888888888888543 3322211 1121222222233344688999999 5999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhcccccchhHHH
Q 010630 363 FIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSL 442 (505)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 442 (505)
+.+..+.++.+++..++.+.. . ..+.+.+...+.|++.+...+...+++.+.+|+++++++.++
T Consensus 89 ~~~~~g~~~~~ig~~l~~~~~--------------~--~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~ 152 (500)
T PRK09584 89 RVIMLGAIVLAIGYALVAWSG--------------H--DAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAF 152 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHhc--------------c--cHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcc
Confidence 999999998888877666542 1 233444556677888888778888999999987445566788
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHH
Q 010630 443 GVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGL 487 (505)
Q Consensus 443 g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 487 (505)
++++...++|..++|.+.|++.+..| +...|.+.++..+++.+
T Consensus 153 ~~~~~~~~iG~~~gp~i~g~l~~~~g--~~~~F~i~~i~~~i~~i 195 (500)
T PRK09584 153 TMYYMSINIGSFFSMLATPWLAAKYG--WSVAFALSVVGMLITVV 195 (500)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhC--HHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999876 67778777665555443
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.7e-10 Score=112.72 Aligned_cols=141 Identities=16% Similarity=0.051 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhH
Q 010630 336 LGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGP 415 (505)
Q Consensus 336 ~~~~~~~~~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 415 (505)
+....+.+......+..|+++||+|||+.+..+.++..++.++....+ +.+.+++.-.+.|++
T Consensus 45 ~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~-----------------~~~~li~~r~l~G~g 107 (495)
T PRK14995 45 WIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSP-----------------TASWLIATRALLAIG 107 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcC-----------------CHHHHHHHHHHHHHH
Confidence 444446666777889999999999999999999999999888877663 467777788889998
Q ss_pred HHHHhhchhHhHhhhh-cccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHhcc
Q 010630 416 LAITYSVPYALVSIRT-ESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIP 494 (505)
Q Consensus 416 ~~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (505)
.+...+.....+.+.. |+ ++|++++|+......+|..+||.++|.+.+..| +.+.|++...+.++..++..+..|
T Consensus 108 ~~~~~~~~~~~l~~~~~~~--~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~g--wr~~f~i~~~~~~~~~~l~~~~l~ 183 (495)
T PRK14995 108 AAMIVPATLAGIRATFTEE--KQRNMALGVWAAVGSGGAAFGPLVGGILLEHFY--WGSVFLINVPIVLVVMGLTARYVP 183 (495)
T ss_pred HHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC--hHHHHHHHHHHHHHHHHHHHHhCC
Confidence 8888777777776665 56 899999999999999999999999999999876 667787776666666666666666
Q ss_pred CCC
Q 010630 495 RSS 497 (505)
Q Consensus 495 ~~~ 497 (505)
+.+
T Consensus 184 ~~~ 186 (495)
T PRK14995 184 RQA 186 (495)
T ss_pred CCC
Confidence 543
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.9e-12 Score=123.23 Aligned_cols=151 Identities=7% Similarity=-0.060 Sum_probs=113.4
Q ss_pred hCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHHhcccccccccCCCCCCcchhHH
Q 010630 61 LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIA 140 (505)
Q Consensus 61 ~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (505)
.+.+..+.+.+.++..+...++.++.|+++| |+|||+.+... .++..+...+..+.++. +
T Consensus 257 ~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~d----r~g~~~~~~~~-~~l~~~~~~l~~~~~~~---------------~ 316 (420)
T PRK09528 257 PEQGTRVFGYLNSFQVFLEALIMFFAPFIIN----RIGAKNALLLA-GTIMAVRIIGSGFATGP---------------L 316 (420)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCcchhhHHH-HHHHHHHHHHHHhcccH---------------H
Confidence 4667778899999999999999999999999 99999887664 44455555555555554 5
Q ss_pred HHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHH-HHHHHHHHHHHHhhcccccccccccccccccccccccc
Q 010630 141 VFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAY-FSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCA 219 (505)
Q Consensus 141 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~~~g~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~ 219 (505)
.+++.+.+.+++.+........++.|.+|++.|+ ...+. .+....+|.++++.+.+++....
T Consensus 317 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a--~~~~~~~~~~~~lg~~ig~~~~G~l~~~~--------------- 379 (420)
T PRK09528 317 EVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSA--TIYLVGFQFAKQLGAVFLSTLAGNLYDSI--------------- 379 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccee--eeeeehHHHHHHHHHHHHHHHHHHHHHhh---------------
Confidence 5566677777777777677778999999998888 55544 56778899999999888743322
Q ss_pred chhHHHHHHHHHHHHHHHHhhhccccCCC
Q 010630 220 NLKSAFFLDVIFIAITTCISASAAHEVPL 248 (505)
Q Consensus 220 ~~~~~f~~~~~~~~~~~~~~~~~~~e~~~ 248 (505)
||+..|.+.+++.++..++.++..+++++
T Consensus 380 G~~~~f~~~~~~~~i~~~~~~~~~~~~~~ 408 (420)
T PRK09528 380 GFQGTYLILGGIVLLFTLISVFTLSGDRE 408 (420)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHhcCCch
Confidence 79999998887777776666666665443
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.8e-10 Score=115.27 Aligned_cols=140 Identities=13% Similarity=0.088 Sum_probs=114.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhH
Q 010630 336 LGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGP 415 (505)
Q Consensus 336 ~~~~~~~~~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 415 (505)
+....+.+...++.++.|++.||+|||+.+..+.++..++.++....+ +.+.+++..++.|++
T Consensus 41 ~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~-----------------~~~~l~~~~~~~G~~ 103 (485)
T TIGR00711 41 WVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAP-----------------NLELMIIFRVIQGFG 103 (485)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcC-----------------CHHHHHHHHHHHHhh
Confidence 334456777888899999999999999999999988888887766552 466777888889999
Q ss_pred HHHHhhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHhccC
Q 010630 416 LAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPR 495 (505)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (505)
.+...+...+++.|.+|+ ++|+++.++.+....++..++|.++|++.+..| +...|++.+.+.++..++..+..|+
T Consensus 104 ~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~--w~~~f~~~~~~~~~~~~~~~~~~~~ 179 (485)
T TIGR00711 104 GGPLIPLSFSTLLNIYPP--EKRGRAMAIWGLTVLVAPALGPTLGGWIIENYH--WRWIFLINVPIGIIVVVVAFFILPR 179 (485)
T ss_pred hhhHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHHHhhhhhccHhHhccCcC--ceehhhhhhHHHHHHHHHHHHHcCC
Confidence 998888899999999998 999999999999999999999999999998866 5667777666666665555555554
Q ss_pred C
Q 010630 496 S 496 (505)
Q Consensus 496 ~ 496 (505)
+
T Consensus 180 ~ 180 (485)
T TIGR00711 180 D 180 (485)
T ss_pred c
Confidence 4
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.7e-12 Score=102.77 Aligned_cols=136 Identities=24% Similarity=0.346 Sum_probs=105.5
Q ss_pred HHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHHhcccccccccCCCCCCcchhHHHHHHHHHHHHhh
Q 010630 73 LCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVA 152 (505)
Q Consensus 73 ~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~ 152 (505)
+...++..++.++.|++.| |+|||+.++.. ......+.+.....++. +...+.+.+.|++
T Consensus 5 ~~~~~~~~~~~~~~g~~~d----~~g~~~~~~~~-~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~g~~ 64 (141)
T TIGR00880 5 AGYALGQLIYSPLSGLLTD----RFGRKPVLLVG-LFIFVLSTAMFALSSNI---------------TVLIIARFLQGFG 64 (141)
T ss_pred EeehhHHHHHHhhHHHHHh----hcchhHHHHHH-HHHHHHHHHHHHHhccH---------------HHHHHHHHHHHHH
Confidence 3456677889999999999 99999888764 44444454444444443 5666778888998
Q ss_pred hhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhhccccccccccccccccccccccccchhHHHHHHHHHH
Q 010630 153 NNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFI 232 (505)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~ 232 (505)
.+...+...+++.|.+|+++|+ +.+++......+|..+++.+.+.+.... +|++.+.+.+.+.
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~ 127 (141)
T TIGR00880 65 AAFALVAGAALIADIYPPEERG--VALGLMSAGIALGPLLGPPLGGVLAQFL---------------GWRAPFLFLAILA 127 (141)
T ss_pred HHHHHHhHHHHHHHHCChhhhh--HHHHHHHHhHHHHHHHhHHhHHHHhccc---------------chHHHHHHHHHHH
Confidence 8888888999999999999999 9999999999999999999887743222 7888888888777
Q ss_pred HHHHHHhhhcccc
Q 010630 233 AITTCISASAAHE 245 (505)
Q Consensus 233 ~~~~~~~~~~~~e 245 (505)
.+..+...+..||
T Consensus 128 ~~~~~~~~~~~~~ 140 (141)
T TIGR00880 128 LAAFILLAFLLPE 140 (141)
T ss_pred HHHHHHHhhcCCC
Confidence 7776666666655
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.1e-10 Score=109.61 Aligned_cols=142 Identities=15% Similarity=0.122 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhH
Q 010630 336 LGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGP 415 (505)
Q Consensus 336 ~~~~~~~~~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 415 (505)
+....+.++..++.++.|+++||+|||+.+..+.++.+++.++....+ +.+.+++.-++.|++
T Consensus 55 ~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~-----------------~~~~l~~~r~l~Gi~ 117 (413)
T PRK15403 55 ASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTT-----------------SMTQFLIARFIQGTS 117 (413)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcC-----------------CHHHHHHHHHHHHHH
Confidence 444455677788899999999999999999999888888877766652 456677777888887
Q ss_pred HHHHhhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHhccC
Q 010630 416 LAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPR 495 (505)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (505)
.+...+..+.++.|.+|+ +++++.+++.+....++..++|.+++.+.+..| +...|++.++..+++.+..++..||
T Consensus 118 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~g--w~~~f~~~~~~~~i~~~~~~~~lp~ 193 (413)
T PRK15403 118 ICFIATVGYVTVQEAFGQ--TKGIKLMAIITSIVLVAPIIGPLSGAALMHFVH--WKVLFAIIAVMGLIAFVGLLLAMPE 193 (413)
T ss_pred HHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 776666667888899888 889999999999999999999999999988765 6677888777777776655555666
Q ss_pred CCC
Q 010630 496 SSA 498 (505)
Q Consensus 496 ~~~ 498 (505)
+++
T Consensus 194 ~~~ 196 (413)
T PRK15403 194 TVK 196 (413)
T ss_pred Ccc
Confidence 543
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.6e-11 Score=116.92 Aligned_cols=162 Identities=14% Similarity=0.121 Sum_probs=117.3
Q ss_pred HHHHHHHHHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHHhcccc
Q 010630 44 QFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSAD 123 (505)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~ 123 (505)
.+.+.....+++.+.++.|.+ +.++..+...++..++.++.|++.| |+||||.+.. +......+.......++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~----r~~~~~~~~~-~~~~~~~~~~~~~~~~~ 301 (399)
T PRK05122 229 SIGFGTIATFITLYYAARGWD--GAALALTLFGVAFVGARLLFGNLIN----RLGGLRVAIV-SLLVEILGLLLLWLAPS 301 (399)
T ss_pred HHHHHHHHHHHHHHHHHcccc--cchHHHHHHHHHHHHHHHHHHHHHH----HhccHHHHHH-HHHHHHHHHHHHHHhcc
Confidence 344555556777777776763 4456667777888889999999999 9999887665 44445555555444443
Q ss_pred cccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhhcccccccc
Q 010630 124 IGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWF 203 (505)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l~~~~~~~ 203 (505)
. +..++...+.|++.+...+...+...|..|+++|+ ++.++.+....+|..+++.+.+.+...
T Consensus 302 ~---------------~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g--~~~g~~~~~~~~g~~~~~~~~g~l~~~ 364 (399)
T PRK05122 302 P---------------WMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRG--AALGAYSVFLDLSLGITGPLAGLVASW 364 (399)
T ss_pred H---------------HHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 44556677888888888877778888999999999 999999999999998888887763332
Q ss_pred ccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccc
Q 010630 204 KILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAH 244 (505)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 244 (505)
. +|++.|++.+++.++..++..+..+
T Consensus 365 ~---------------g~~~~~~~~~~~~~~~~~~~~~~~~ 390 (399)
T PRK05122 365 F---------------GYPSIFLAAALAALLGLALTWLLYR 390 (399)
T ss_pred c---------------CHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2 7899998888777666555554433
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=6.6e-10 Score=108.32 Aligned_cols=139 Identities=12% Similarity=0.035 Sum_probs=109.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHH
Q 010630 338 LMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLA 417 (505)
Q Consensus 338 ~~~~~~~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 417 (505)
.....++..++.++.|+++||+|||+.+..+..+.+++........ +.+.+++...+.|++.+
T Consensus 54 ~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~-----------------~~~~l~~~~~l~G~~~~ 116 (406)
T PRK15402 54 MTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQ-----------------SIEQFTLLRFLQGIGLC 116 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHc-----------------cHHHHHHHHHHHHhHhh
Confidence 4446777788889999999999999999998888888777766552 35666677777888887
Q ss_pred HHhhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHhccCCC
Q 010630 418 ITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPRSS 497 (505)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (505)
...+...+.+.|.+|+ +++++..++......++..++|.+++.+.+..+ +...+++.+++.+++.+......||++
T Consensus 117 ~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~--w~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (406)
T PRK15402 117 FIGAVGYAAIQESFEE--ADAIKITALMANVALLAPLLGPLVGAALIHVLP--WRGMFVLFAALAALSFFGLWRAMPETA 192 (406)
T ss_pred hHHHHHHHHHHHHhCh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--ccHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 7777788889999998 888888998888888899999999999988765 566777777776666655555555543
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.9e-11 Score=107.53 Aligned_cols=140 Identities=16% Similarity=0.100 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHH
Q 010630 340 LNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAIT 419 (505)
Q Consensus 340 ~~~~~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 419 (505)
..++..++.+++.|.+.||+|+|..+++|..++....+++.+.. +.+..++.-.+-|++.+..
T Consensus 114 skA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~-----------------sy~~l~vAR~LQgvgsA~~ 176 (464)
T KOG3764|consen 114 SKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGN-----------------SYPMLFVARSLQGVGSAFA 176 (464)
T ss_pred HHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcc-----------------hhHHHHHHHHHhhhhHHHH
Confidence 46888999999999999999999999999999999999999884 5678888899999999999
Q ss_pred hhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHhccCCCCC
Q 010630 420 YSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPRSSAQ 499 (505)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (505)
.+...++++|.+|++ ++||+++|+.-.+.++|-.+||..+|.+++..| +...|++.++++++...+.++..+.++.+
T Consensus 177 ~tsglamlAd~f~~d-~er~~vmGialgfislG~lvgPpfGGilYe~~G--k~aPFlVL~~v~Lld~~L~l~vi~p~~~~ 253 (464)
T KOG3764|consen 177 DTSGLAMLADVFPED-NERGSVMGIALGFISLGVLVGPPFGGILYEFAG--KSAPFLVLAIVLLLDGALQLLVIEPTEMD 253 (464)
T ss_pred HhhhHHHHHHHcccc-hhhhHHHHHHHHHHhccceecCCcccchHhhcC--CcCcHHHHHHHHHHHHHHHHheeCccccC
Confidence 999999999999984 678999999999999999999999999999987 78889999999998887777776654433
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.8e-10 Score=108.40 Aligned_cols=182 Identities=16% Similarity=0.153 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Q 010630 286 TIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIW 365 (505)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~~r~g~~~~~ 365 (505)
.+....+..++...+......+.+.+..+ ++.+..+. .............+...++.++.|+++||+|||+.+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~~~-----~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~ 87 (408)
T PRK09874 15 NLTVAWLGCFLTGAAFSLVMPFLPLYVEQ--LGVTGHSA-----LNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIML 87 (408)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHH--hCCccchh-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHH
Confidence 33444445555555555555666776632 33222110 000012233345677788889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhcccccchhHHHHHH
Q 010630 366 GISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVL 445 (505)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~ 445 (505)
..+.++.+++..+..... +.+.+++...+.|++.+ ..+....++.+..|+ ++|+++.|..
T Consensus 88 ~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~ 147 (408)
T PRK09874 88 LRSALGMGIVMVLMGLAQ-----------------NIWQFLILRALLGLLGG-FVPNANALIATQVPR--NKSGWALGTL 147 (408)
T ss_pred HHHHHHHHHHHHHHHHHh-----------------hHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCH--hhhhHHHHHH
Confidence 988888877777665542 45666666677777654 345566778888888 8899999999
Q ss_pred HHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHhccCC
Q 010630 446 NLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPRS 496 (505)
Q Consensus 446 ~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (505)
+....++..++|.+++.+.+..+ ....|.+.+++.+++.+...+..+++
T Consensus 148 ~~~~~~g~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (408)
T PRK09874 148 STGGVSGALLGPLAGGLLADSYG--LRPVFFITASVLFLCFLVTLFCIREN 196 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 99999999999999999998765 56677777777666666555555543
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.3e-09 Score=111.57 Aligned_cols=139 Identities=12% Similarity=-0.029 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHH
Q 010630 338 LMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLA 417 (505)
Q Consensus 338 ~~~~~~~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 417 (505)
.....++.+++.+++|+++||+|||+.++++.++.+++.++..+.. +.+.+++..++.|++.+
T Consensus 208 ~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa~-----------------s~~~llv~R~l~G~g~g 270 (742)
T TIGR01299 208 GLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQ-----------------GYGFFLFCRLLSGFGIG 270 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHh-----------------hHHHHHHHHHHHHHHHH
Confidence 3445677889999999999999999999998888888777776653 46677788889999999
Q ss_pred HHhhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcC-----------CCchHHHHHHHHHHHHH
Q 010630 418 ITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGG-----------GNSPAFAVGGISALAGG 486 (505)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~-----------~~~~~~~~~~~~~~~~~ 486 (505)
...+...+++.|.+|+ +.||+.+++.++...+|.++++.++..+....|. ++...+++.++..+++.
T Consensus 271 ~~~p~~~~~isE~~p~--~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~l 348 (742)
T TIGR01299 271 GAIPIVFSYFAEFLAQ--EKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAI 348 (742)
T ss_pred HHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHH
Confidence 9999999999999999 9999999999999999999999988777765432 12334455544444443
Q ss_pred HHHHHhccCC
Q 010630 487 LIAILAIPRS 496 (505)
Q Consensus 487 ~~~~~~~~~~ 496 (505)
+..++.||.
T Consensus 349 -l~~~~lPES 357 (742)
T TIGR01299 349 -GALTFMPES 357 (742)
T ss_pred -HHHHHcCCC
Confidence 344455554
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.7e-10 Score=105.81 Aligned_cols=136 Identities=14% Similarity=0.133 Sum_probs=120.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHh
Q 010630 341 NSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITY 420 (505)
Q Consensus 341 ~~~~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 420 (505)
..+...++..+.|.++||.+.|+.+..+.++.++..+++.+.. +.+.+.++..+-|..++...
T Consensus 73 f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~-----------------s~~~~~~l~~lng~fQg~Gw 135 (448)
T COG2271 73 FSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSP-----------------SLFLFAVLWVLNGWFQGMGW 135 (448)
T ss_pred HHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhh-----------------HHHHHHHHHHHHHHHhcCCC
Confidence 5777888999999999999999999999999999999999885 67888888999999999999
Q ss_pred hchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhh--hhhHhhhcCCCchHHHHHHHHHHHHHHHHHHhccCCC
Q 010630 421 SVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGS--GPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPRSS 497 (505)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~--g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (505)
|.....+.+.+|+ ++||+..+++|.+.++|+.+.|++. +++.++.+ ....|++-++++++..++.++..|+++
T Consensus 136 pp~~~~i~~Wfsr--~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~--w~~~f~~pgiiaiival~~~~~~rd~P 210 (448)
T COG2271 136 PPCARTITHWFSR--KERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGG--WRAAFYFPGIIAIIVALILLFLLRDRP 210 (448)
T ss_pred cHHHHHHHHHcCc--cccCceEEEehhhhhcccchHHHHHHHHHHHhccc--hhHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 9999999999999 9999999999999999999999999 88888754 677898888888877777777665443
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.3e-10 Score=93.21 Aligned_cols=132 Identities=18% Similarity=0.179 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhh
Q 010630 342 SVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYS 421 (505)
Q Consensus 342 ~~~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 421 (505)
.+...++.++.+++.||+|||+.+..+..+..++.+...... +.+...+...+.|++.+...+
T Consensus 8 ~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~g~~~~~~~~ 70 (141)
T TIGR00880 8 ALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSS-----------------NITVLIIARFLQGFGAAFALV 70 (141)
T ss_pred hhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhc-----------------cHHHHHHHHHHHHHHHHHHHH
Confidence 455677889999999999999999888887777776665542 356667778888998888888
Q ss_pred chhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHhcc
Q 010630 422 VPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIP 494 (505)
Q Consensus 422 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (505)
....++.|..|+ +++++..++.+....++..++|.+.+.+.+..+ +...+.+.+...+++.+......|
T Consensus 71 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 139 (141)
T TIGR00880 71 AGAALIADIYPP--EERGVALGLMSAGIALGPLLGPPLGGVLAQFLG--WRAPFLFLAILALAAFILLAFLLP 139 (141)
T ss_pred hHHHHHHHHCCh--hhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccc--hHHHHHHHHHHHHHHHHHHhhcCC
Confidence 888999999998 899999999999999999999999999988755 556677776666666655555544
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1e-10 Score=113.37 Aligned_cols=159 Identities=15% Similarity=0.164 Sum_probs=110.3
Q ss_pred HHHHHhhhhHH-HHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHHhccccccc
Q 010630 48 ALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGW 126 (505)
Q Consensus 48 ~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (505)
.....+.|.|. +++|.++.+.+.+.+...+...++.++.|+++| |+|||+.+.. +.......+......++.
T Consensus 233 ~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~d----r~g~~~~~~~-~~~~~~~~~~~~~~~~~~-- 305 (393)
T PRK15011 233 SLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAK----RLGKRFLMRV-AAVAGVCFYAGMLMAHSP-- 305 (393)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhChHHHHHH-HHHHHHHHHHHHHHHhhH--
Confidence 33445677776 568999999999888877878888999999999 9999986655 333333333333222222
Q ss_pred ccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhhccccccccccc
Q 010630 127 LLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKIL 206 (505)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l~~~~~~~~~~ 206 (505)
+..++.+.+.+++.+...+....+..|..|+ +|+ +++++.+...++|..+++.+++.+....
T Consensus 306 -------------~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~~g--~~~~~~~~~~~lg~~~g~~l~G~i~~~~-- 367 (393)
T PRK15011 306 -------------AILLGLQLLNAIYIGILGGIGMLYFQDLMPG-QAG--SATTLYTNTSRVGWIIAGSLAGIVAEIW-- 367 (393)
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-Ccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 3444555555566666556667788899885 588 8999988889999999999988743322
Q ss_pred cccccccccccccchhHHHHHHHHHHHHHHHHhhhcccc
Q 010630 207 PFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHE 245 (505)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e 245 (505)
+|+..|.+.+++.++..+. .++.||
T Consensus 368 -------------g~~~~~~~~~~~~~~~~~~-~~~~~~ 392 (393)
T PRK15011 368 -------------NYHAVFWFALVMIIATLFC-LLRIKD 392 (393)
T ss_pred -------------hhHHHHHHHHHHHHHHHHH-HHhhcC
Confidence 7888888777665554443 444454
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.25 E-value=8e-10 Score=107.43 Aligned_cols=157 Identities=14% Similarity=0.016 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Q 010630 285 GTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFI 364 (505)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~~r~g~~~~ 364 (505)
|.+....+..++...+......+.++++. + ++.++. ........+.+...++.++.|++.||+|||+.
T Consensus 13 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~-~g~s~~----------~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~ 80 (402)
T TIGR00897 13 LNLLWGYIGVVVFMTGDGLEQGWLSPFLK-A-LGLSPQ----------QSASAFTLYGIAAAISAWISGVVAEIIGPLKT 80 (402)
T ss_pred chhhHHHHHHHHHHHhhhhHHHhHHHHHH-H-hCCCHH----------HhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHH
Confidence 55666666666666665555556677663 2 232221 11233445677888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhcccccchhHHHHH
Q 010630 365 WGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGV 444 (505)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 444 (505)
+..+..+.+++.++..... ....+.+..++...+.|++.+...+...+.+.+..|+ ++||+++|+
T Consensus 81 l~~~~~~~~~~~~~~~~~~-------------~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~--~~~g~~~g~ 145 (402)
T TIGR00897 81 MMIGLLLWCVGHAAFIVFG-------------LGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQ--DNLSSAVGW 145 (402)
T ss_pred HHHHHHHHHHHHHHHHHHh-------------ccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCH--HHHHHHHHH
Confidence 9998888877765543221 0001345556667777888777666666777888888 899999999
Q ss_pred HHHHHHHHH-HHHHhhhhhhHhhhc
Q 010630 445 LNLAIVIPQ-IVVSMGSGPWDQLFG 468 (505)
Q Consensus 445 ~~~~~~~~~-~i~~~~~g~l~~~~g 468 (505)
.+....+|. .++|.+++.+.+..|
T Consensus 146 ~~~~~~~g~~~~g~~~~~~l~~~~g 170 (402)
T TIGR00897 146 FWAVYSIGIGVFGSYYSSYAIPAFG 170 (402)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccc
Confidence 999999997 579999999888765
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=8.1e-10 Score=107.25 Aligned_cols=140 Identities=13% Similarity=0.112 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHH
Q 010630 337 GLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPL 416 (505)
Q Consensus 337 ~~~~~~~~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 416 (505)
......+...++.++.|+++||+|||+.+..+..+..++.+...... +.+.+++...+.|++.
T Consensus 48 ~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~-----------------~~~~l~~~~~~~g~~~ 110 (394)
T PRK11652 48 VMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAH-----------------SLTVLIAASAIQGLGT 110 (394)
T ss_pred HHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHc-----------------cHHHHHHHHHHHHhhh
Confidence 34446777788899999999999999999988888877777665542 3566777778888887
Q ss_pred HHHhhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHhccCC
Q 010630 417 AITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPRS 496 (505)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (505)
+...+....+..|..++ ++++.+.+..+....++..++|.+++.+.+..| +...|.+.++..++..+...+..||+
T Consensus 111 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g--~~~~f~~~~~~~~~~~~~~~~~~~~~ 186 (394)
T PRK11652 111 GVGGVMARTLPRDLYEG--TQLRHANSLLNMGILVSPLLAPLIGGLLTTLFG--WRACYLFLLLLGAGVTFSMARWMPET 186 (394)
T ss_pred hHHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 77777777788888887 889999999999999999999999999988765 56667766655555444444455554
Q ss_pred C
Q 010630 497 S 497 (505)
Q Consensus 497 ~ 497 (505)
+
T Consensus 187 ~ 187 (394)
T PRK11652 187 R 187 (394)
T ss_pred C
Confidence 3
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.9e-10 Score=108.21 Aligned_cols=129 Identities=13% Similarity=0.069 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHH
Q 010630 338 LMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLA 417 (505)
Q Consensus 338 ~~~~~~~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 417 (505)
.....+...++.++.|++.||+|||+.+..+.++.+++.++..+.. +.+..++...+.|++.+
T Consensus 53 ~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~-----------------~~~~l~~~~~l~G~~~~ 115 (405)
T TIGR00891 53 ISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAP-----------------GYITMFIARLVIGIGMG 115 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhc-----------------cHHHHHHHHHHHHhhhh
Confidence 3446677788899999999999999999999888888877776653 46667778888999999
Q ss_pred HHhhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHH
Q 010630 418 ITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAG 485 (505)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 485 (505)
...+...+++.|..|+ ++|+++.++.+....+|..+++.+.+.+.+..+.++...|.+.++..++.
T Consensus 116 ~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~ 181 (405)
T TIGR00891 116 GEYGSSAAYVIESWPK--HLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFA 181 (405)
T ss_pred hhhHHHHHHHHHhCCh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH
Confidence 8888889999999998 99999999999999999999999999988876433445565544444333
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.5e-09 Score=105.61 Aligned_cols=136 Identities=17% Similarity=0.065 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHH
Q 010630 338 LMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLA 417 (505)
Q Consensus 338 ~~~~~~~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 417 (505)
.....+...++.++.|+++||+|||+.+..+..+..++.++..+.. +.+..++...+.|++.+
T Consensus 47 ~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~-----------------~~~~l~~~~~l~G~~~~ 109 (401)
T PRK11043 47 LSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVE-----------------SAAQLLVLRFVQAVGVC 109 (401)
T ss_pred HHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhc-----------------CHHHHHHHHHHHHhhhH
Confidence 3445677788999999999999999999988888877777666552 35666666777788777
Q ss_pred HHhhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHhcc
Q 010630 418 ITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIP 494 (505)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (505)
...+...+++.|.+|+ ++++...+..+....++..++|.+++.+.+..| +...|.+.+++.++..+......+
T Consensus 110 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~ 182 (401)
T PRK11043 110 SAAVIWQALVIDRYPA--QKANRVFATIMPLVALSPALAPLLGAWLLNHFG--WQAIFATLFAITLLLILPTLRLKP 182 (401)
T ss_pred HHHHHHHHHHHHhcCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--hHHHHHHHHHHHHHHHHHHHHcCC
Confidence 7666677888999988 788888898888889999999999999998876 566677666666665554444433
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=8.2e-10 Score=106.59 Aligned_cols=138 Identities=14% Similarity=0.126 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHH
Q 010630 338 LMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLA 417 (505)
Q Consensus 338 ~~~~~~~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 417 (505)
.....+...++.++.|++.||+|||+.+..+.++.+++........ +.+..++...+.|++.+
T Consensus 32 ~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~-----------------~~~~~~~~~~l~g~~~~ 94 (377)
T PRK11102 32 LSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQ-----------------TIDQLIYMRFLHGLAAA 94 (377)
T ss_pred HHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHc-----------------cHHHHHHHHHHHHHHHH
Confidence 3446677788899999999999999999999988888888776653 35666777788888888
Q ss_pred HHhhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHhccCC
Q 010630 418 ITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPRS 496 (505)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (505)
...+...+++.|..|+ ++|++.+++.+....++..++|.+++.+.+..+ +...|.+.+++.++..+......||+
T Consensus 95 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (377)
T PRK11102 95 AASVVINALMRDMFPK--EEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFS--WHAIFWVLALAAILAAALVFFFIPET 169 (377)
T ss_pred HHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 8888888999999998 899999999999999999999999999998765 56677777666666665555555554
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.2e-10 Score=115.63 Aligned_cols=184 Identities=15% Similarity=0.049 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHH-HHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHH
Q 010630 33 LLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISI 111 (505)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~ 111 (505)
.+......+.....+.....++|.|+ +++|.|..+.++..+...++..++.++.|+++| |+|||+..+.......
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsD----r~g~r~~~~~~~~~~~ 335 (467)
T PRK09556 260 IWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSD----LANGRRALVACIALAL 335 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHCCCchHHHHHHHHH
Confidence 44444444444444445667888887 568999999999999999999999999999999 9999887655332222
Q ss_pred HHH-HHHHhcccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHH-H
Q 010630 112 AVA-VLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAV-G 189 (505)
Q Consensus 112 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~-g 189 (505)
+.. .+.....++. ....+..++.|++.............|.+|+++|+ .+.|+.+...++ |
T Consensus 336 ~~~~~~~~~~~~~~---------------~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g--~a~gi~~~~g~l~g 398 (467)
T PRK09556 336 IIFTLGVYQHATSE---------------YMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIG--VANGIKGTFAYLFG 398 (467)
T ss_pred HHHHHHHHHhcCcH---------------HHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHH--HHHHHHHHHHHHHh
Confidence 211 1111111111 33334455555433222233346677999999999 999999888886 7
Q ss_pred HHHHhhccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhh
Q 010630 190 NILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISA 240 (505)
Q Consensus 190 ~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 240 (505)
..+++.+.|.+.....-. .........+|+..|.+..++.++..+..+
T Consensus 399 ~~~~~~~~G~i~~~~~~g---~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 446 (467)
T PRK09556 399 DSFAKVGLGMIADPTKNG---TPIFGYTLTGWAGTFAALDIAAIGCICLMA 446 (467)
T ss_pred HHHHhhhHHHHhcccccc---cccccccccChHHHHHHHHHHHHHHHHHHH
Confidence 688888877733200000 000000013799999888766665544443
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.6e-10 Score=112.03 Aligned_cols=160 Identities=16% Similarity=0.140 Sum_probs=118.9
Q ss_pred HHHHHHHHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHHhccccc
Q 010630 45 FGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADI 124 (505)
Q Consensus 45 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~ 124 (505)
........+.+.+.++.+.+. .+.......++..+++++.|++.| |+||||.+.. +.....++..+..+.++.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~----r~g~~~~~~~-~~~~~~~~~~~~~~~~~~ 302 (392)
T PRK12382 230 VGFAVIGTFVSLYFASKGWAM--AGFTLTAFGGAFVLMRVLFGWMPD----RFGGVKVAIV-SLLVETVGLLLLWLAPTA 302 (392)
T ss_pred HHHhHHHHHHHHHHHhcCCch--hHHHHHHHHHHHHHHHHHHHHHHH----hcCCCeehHH-HHHHHHHHHHHHHHcccH
Confidence 344455567777887777654 455566677778889999999999 9999988776 444455555555444433
Q ss_pred ccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhhccccccccc
Q 010630 125 GWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFK 204 (505)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l~~~~~~~~ 204 (505)
+...+...+.|++.+...+...+.+.|..|+++|+ ++.++.+....+|..+++.+.+.+....
T Consensus 303 ---------------~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g--~~~g~~~~~~~~g~~ig~~~~g~l~~~~ 365 (392)
T PRK12382 303 ---------------WVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRG--TALGGYAAFQDIAYGVSGPLAGMLATSF 365 (392)
T ss_pred ---------------HHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45556677778888877788888899999999999 9999999999999999999988743322
Q ss_pred cccccccccccccccchhHHHHHHHHHHHHHHHHhhhcc
Q 010630 205 ILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAA 243 (505)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 243 (505)
+|+..|.+.+++.++..++.++..
T Consensus 366 ---------------g~~~~~~~~~~~~~~~~~~~~~~~ 389 (392)
T PRK12382 366 ---------------GYPSVFLAGAISAVLGIIVTILSF 389 (392)
T ss_pred ---------------CchHHHHHHHHHHHHHHHHHHhhc
Confidence 899999988877766666555443
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.3e-09 Score=103.91 Aligned_cols=137 Identities=12% Similarity=-0.035 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHH
Q 010630 339 MLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAI 418 (505)
Q Consensus 339 ~~~~~~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 418 (505)
..+.+...++++..|++.||+|||+++..+......+... ... +. +.+.+++.-++.|++.+.
T Consensus 33 s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~-~~~--------------~~--~~~~l~~~R~l~G~g~~~ 95 (368)
T TIGR00903 33 ITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGR-LLD--------------PF--NYEWLLACQLLAALGQPF 95 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHH-HHH--------------hc--cHHHHHHHHHHHHhHhHH
Confidence 3456677888899999999999988766544444333221 122 11 466778888888998886
Q ss_pred HhhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHhccCCC
Q 010630 419 TYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPRSS 497 (505)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (505)
. .......+|..|+ ++|++++++.+....+|..+++.+++.+.+..| ++..|++.+++.++..++.++..||.+
T Consensus 96 ~-~~~~~~~~~~~~~--~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~g--Wr~~f~~~~~l~~~~~~~~~~~lp~~p 169 (368)
T TIGR00903 96 L-LNAFAPAASQIRE--ERRDLVISLLSFAMYLGIIFALAAGLKIYTAGG--LQLLIIPIAAVAAAGIILVLAALPALP 169 (368)
T ss_pred H-HHHHHHHHHHcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--hHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 4 4555666899998 999999999999999999999999999998766 667888877777776666666666654
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.1e-09 Score=103.80 Aligned_cols=152 Identities=9% Similarity=-0.003 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Q 010630 285 GTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFI 364 (505)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~~r~g~~~~ 364 (505)
|+++.++...++..........+.+.+..+ ++.+. ....+......++..++.++.|+++||+|||+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~--~~~s~----------~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~ 73 (381)
T PRK03633 6 RPVLLLLCGLLLLTLAIAVLNTLVPLWLAQ--EHLPT----------WQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRS 73 (381)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHH--cCCCH----------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 667777777777777777777777877642 23221 112233445677788899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhcccccchhHHHHH
Q 010630 365 WGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGV 444 (505)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 444 (505)
+..+.++.+++.....+.+ +.+.+++..++.|++.+...+.....+.+..++ ++|++++|.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~-----------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 134 (381)
T PRK03633 74 YYLASLIFAAGCAGLGLMV-----------------GFWSWLAWRFVAGIGCAMIWVVVESALMCSGTS--RNRGRLLAA 134 (381)
T ss_pred HHHHHHHHHHHHHHHHHhc-----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH--HHHHHHHHH
Confidence 9999988888887776653 466777778888998888777767777788887 889999999
Q ss_pred HHHHHHHHHHHHHhhhhhhHhhh
Q 010630 445 LNLAIVIPQIVVSMGSGPWDQLF 467 (505)
Q Consensus 445 ~~~~~~~~~~i~~~~~g~l~~~~ 467 (505)
.+....+|..+||.+++.+.+..
T Consensus 135 ~~~~~~~g~~~g~~~~~~l~~~~ 157 (381)
T PRK03633 135 YMMVYYLGTVLGQLLVSKVSTEL 157 (381)
T ss_pred HHHHHHHHHHHHHHHHhcccccc
Confidence 99999999999999999987653
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.4e-09 Score=104.98 Aligned_cols=173 Identities=16% Similarity=0.076 Sum_probs=109.6
Q ss_pred HHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH-HHH
Q 010630 292 IVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGI-SNI 370 (505)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~~r~g~~~~~~~-~~~ 370 (505)
+..++..++........+.|+.++ ++.++ ....+......+...+.+++.|+++||+||||.+.. +..
T Consensus 4 ~~~~~~~~~~~~~~~~l~~~l~~~-~g~s~----------~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~ 72 (375)
T TIGR00899 4 LVAFLTGIAGALQFPTLSLFLSEE-VRARP----------AMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCL 72 (375)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHcc-cCCCH----------HHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHH
Confidence 344555555555556666666432 22111 111122334556677888999999999999887654 444
Q ss_pred HHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhcccccchhH--HHHHHHHH
Q 010630 371 LMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGL--SLGVLNLA 448 (505)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~g~~~~~ 448 (505)
+..++..+....+ +.+.+++...+.+...+...+...++..|..|+ ++|+. ..+..+..
T Consensus 73 ~~~~~~~~~~~~~-----------------~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 133 (375)
T TIGR00899 73 LAALACLLFAWNR-----------------NYFLLLVLGVLLSSFASTANPQLFALAREHADR--TGREAVMFSSVMRAQ 133 (375)
T ss_pred HHHHHHHHHHhcc-----------------hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhh--cchhhHHHHHHHHHH
Confidence 4445555544442 344444445555655555666667777787776 44443 36777888
Q ss_pred HHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHhccCC
Q 010630 449 IVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPRS 496 (505)
Q Consensus 449 ~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (505)
..+|..++|.+++.+.+..| +...|++.+++.++..++.++..||.
T Consensus 134 ~~~g~~ig~~~~~~l~~~~~--~~~~f~~~~~~~~~~~~~~~~~~~~~ 179 (375)
T TIGR00899 134 ISLAWVIGPPLAFWLALGFG--FTVMFLTAALAFVLCGVLVWLFLPSY 179 (375)
T ss_pred HhHHHHHhhhHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 89999999999999998865 66778887777776666665555553
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.20 E-value=5e-11 Score=115.71 Aligned_cols=150 Identities=22% Similarity=0.285 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHH-HHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHH
Q 010630 33 LLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISI 111 (505)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~ 111 (505)
.+......+...........++|.+. +++|.+..+.+.+.....+...++.++.|+++| |+|||+.++..+.+..
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~g~~~~~~~~~~~~~ 296 (394)
T TIGR00883 221 FLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSD----RIGRRPVLIIFTVLAA 296 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHH----HhchHHHHHHHHHHHH
Confidence 33333334444455555667788887 678999999999999999999999999999999 9999987765444443
Q ss_pred HHHHHH-HhcccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHH-HHHHHHHH
Q 010630 112 AVAVLL-IGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAY-FSLFMAVG 189 (505)
Q Consensus 112 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~~~g 189 (505)
..+... .....+ ...+.......+.+++.+...++..+++.|.+|+++|+ ++.++ .+....+|
T Consensus 297 ~~~~~~~~~~~~~-------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~--~~~~~~~~~~~~~g 361 (394)
T TIGR00883 297 LLAVPLLMALLDS-------------GSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRY--TGASLAYNLAGAIF 361 (394)
T ss_pred HHHHHHHHHHhcC-------------CchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCcccee--eEeeehhHhHHHHH
Confidence 333221 111110 01144455566677778888888999999999999999 88887 45566778
Q ss_pred HHHHhhcccccc
Q 010630 190 NILGYATGSFSG 201 (505)
Q Consensus 190 ~~ig~~l~~~~~ 201 (505)
..++|.+++.+.
T Consensus 362 ~~~~p~~~g~l~ 373 (394)
T TIGR00883 362 GGFAPYIAAALV 373 (394)
T ss_pred hhHHHHHHHHHH
Confidence 888888887743
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.7e-10 Score=108.94 Aligned_cols=139 Identities=14% Similarity=0.053 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhH
Q 010630 336 LGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGP 415 (505)
Q Consensus 336 ~~~~~~~~~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 415 (505)
+......+...++.++.|++.||+|||+.+..+.++.+++..+..+.. +.+.+++...+.|++
T Consensus 33 ~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~l~g~~ 95 (399)
T TIGR00893 33 YVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAG-----------------AYVSLYILRVLLGAA 95 (399)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHc-----------------CHHHHHHHHHHHHHH
Confidence 334446777888999999999999999999999888888887777663 467778888899999
Q ss_pred HHHHhhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHhccC
Q 010630 416 LAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPR 495 (505)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (505)
.+...+....++.|..|+ ++|++.+++.+....+|..+++.+.+.+.+..+ +...|.+.++..++..+......++
T Consensus 96 ~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (399)
T TIGR00893 96 EAPFFPGIILIVASWFPA--SERATAVSIFNSAQGLGGIIGGPLVGWILIHFS--WQWAFIIEGVLGIIWGVLWLKFIPD 171 (399)
T ss_pred HHhhhhHHHHHHHHhCCH--HHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHhhheecC
Confidence 999888899999999998 999999999999999999999999999988865 5667777776666665555544444
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.20 E-value=2e-10 Score=109.61 Aligned_cols=159 Identities=23% Similarity=0.371 Sum_probs=126.7
Q ss_pred HHHHHHHHHhhhhHHHHh-CCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcc-hhHHHHHHHHHHHHHHHhcc
Q 010630 44 QFGWALQLSLLTPYVQEL-GIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRR-PFIVCGAISIAVAVLLIGLS 121 (505)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~-g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~-~~~~~~~~~~~~~~~~~~~~ 121 (505)
.........+.+.+.++. |.++.+.+...+...+...++.++.|+++| |+|||+ .+.. +.....++.......
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~-~~~~~~i~~~~~~~~ 262 (352)
T cd06174 188 SFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSD----RLGRRRLLLLI-GLLLAALGLLLLALA 262 (352)
T ss_pred HhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhHHHHH-HHHHHHHHHHHHHHh
Confidence 344455556777777654 999999999999999999999999999999 999998 6665 445455555555544
Q ss_pred cccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhhcccccc
Q 010630 122 ADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSG 201 (505)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l~~~~~ 201 (505)
++. +...+...+.+++.+...+...+++.|..|+++|+ +.+++.+...++|..+++.+.+.+.
T Consensus 263 ~~~---------------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~i~g~l~ 325 (352)
T cd06174 263 PSL---------------ALLLVALLLLGFGLGFAFPALLTLASELAPPEARG--TASGLFNTFGSLGGALGPLLAGLLL 325 (352)
T ss_pred ccH---------------HHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 433 56677788889999999999999999999999999 9999999999999999999988743
Q ss_pred ccccccccccccccccccchhHHHHHHHHHHHHHHHHh
Q 010630 202 WFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCIS 239 (505)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 239 (505)
... +|+..+.+.+++..+..++.
T Consensus 326 ~~~---------------~~~~~~~~~~~~~~i~~i~~ 348 (352)
T cd06174 326 DTG---------------GYGGVFLILAALALLAALLL 348 (352)
T ss_pred ccc---------------CcchHHHHHHHHHHHHHHHh
Confidence 222 88888988887776665554
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.8e-10 Score=107.92 Aligned_cols=136 Identities=21% Similarity=0.178 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHH
Q 010630 339 MLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAI 418 (505)
Q Consensus 339 ~~~~~~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 418 (505)
....+...++.++.|++.||+|||+.+..+.++..++.++..... +.+..++...+.|++.+.
T Consensus 59 ~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~g~~~~~ 121 (398)
T TIGR00895 59 SAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALAT-----------------NVTQLLILRFLAGLGLGG 121 (398)
T ss_pred HHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcc-----------------chHHHHHHHHHHhccccc
Confidence 345667788899999999999999999998888887777666552 456677778888998888
Q ss_pred HhhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHhccC
Q 010630 419 TYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPR 495 (505)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (505)
..+...+++.|..|+ ++|++++|+.+....+|..+++.+.+.+.+..| +...+.+.+++.++..++.....|+
T Consensus 122 ~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (398)
T TIGR00895 122 LMPNLNALVSEYAPK--RFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFG--WRSLFYVGGIAPLLLLLLLMRFLPE 194 (398)
T ss_pred chhhHHHHHHHHcCH--HhhchhHhhHhhHHHHHHHHHHHHHHHHhhccc--ceeehhhhhhHHHHHHHHHHHhCCC
Confidence 888899999999998 899999999999999999999999999998866 5556666654555544444444444
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.8e-11 Score=113.24 Aligned_cols=139 Identities=16% Similarity=0.080 Sum_probs=124.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHH
Q 010630 340 LNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAIT 419 (505)
Q Consensus 340 ~~~~~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 419 (505)
...+...+.+++.|++.||++|++++.+|..+..++.++..+.. ..|.++++-.+.|+|.+..
T Consensus 76 vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~-----------------~Fwq~~l~R~~vGiGeAs~ 138 (493)
T KOG1330|consen 76 VFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSN-----------------HFWQVLLCRGFVGIGEASY 138 (493)
T ss_pred HHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHhccchhhh
Confidence 35666788899999999999999999999999999888888774 5789999999999999999
Q ss_pred hhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHhccCCCC
Q 010630 420 YSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPRSSA 498 (505)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (505)
.++.+++++|.+|+ .+|++.+++++++...|..+|-..++.+.+..++ ++++|...+++.++..++..++.+|+++
T Consensus 139 ~~ia~s~IaD~f~~--~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~-Wr~af~~~avl~vi~~~L~~~f~~eP~r 214 (493)
T KOG1330|consen 139 SPIAPSLIADSFPD--DKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFW-WRWAFRGSAVLGVIVGLLVFLFVREPER 214 (493)
T ss_pred cccchhHhhhcCcc--hhhhHHHHHhhhhcccccceeEEeeeeeccCccc-eEEEEEeehHHHHHHHHHHHhhccCccc
Confidence 99999999999999 9999999999999999999999999998888753 6788999999999988888888877664
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.1e-09 Score=105.77 Aligned_cols=144 Identities=14% Similarity=0.063 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhH
Q 010630 336 LGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGP 415 (505)
Q Consensus 336 ~~~~~~~~~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 415 (505)
+......+...++.++.|++.||+|||+.+..+.++.+++.++..... ....+.+...+...+.|++
T Consensus 65 ~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~l~~~~~l~g~~ 131 (438)
T TIGR00712 65 FALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVP-------------WATSSIAIMFVLLFLNGWF 131 (438)
T ss_pred HHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccc-------------cccchHHHHHHHHHHHHHH
Confidence 334446677788899999999999999999888888877776655431 0001344455666677888
Q ss_pred HHHHhhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHhccC
Q 010630 416 LAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPR 495 (505)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (505)
.+...+.....+.|.+|+ ++||+++|+.+....++..+++.+.+...+.. .++...|++.+++.++..+..++..||
T Consensus 132 ~g~~~~~~~~~i~~~~~~--~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~-~~w~~~f~~~~~~~~i~~~~~~~~~~~ 208 (438)
T TIGR00712 132 QGMGWPPCGRTMVHWWSQ--SERGTIVSIWNCAHNIGGGIPPLLVLLGMAWF-NDWHAALYFPAICAIIVALFAFAMMRD 208 (438)
T ss_pred hhcchHHHHHHHHHhcCc--ccchhHHHHHHHHHHhHhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHhccC
Confidence 877777777888899998 89999999999999999999998877655532 125667877777766665555555544
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.1e-09 Score=102.14 Aligned_cols=150 Identities=14% Similarity=0.108 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Q 010630 287 IWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWG 366 (505)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~~r~g~~~~~~ 366 (505)
++..+...+.....+.....+.+.++.++ ++.++.. ..+......+...++.++.|+++||+|||+.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~----------~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~ 71 (366)
T TIGR00886 3 LFFSWFGFFLSFSVWFAFSPLAVQMIKDD-LGLSTAQ----------LGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTT 71 (366)
T ss_pred hHHHHHHHHHHHHHHHHhHHhhhHHHHHH-hCCCHHH----------hhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHH
Confidence 44445555555555556565666555333 3333221 123344467778889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhcccccchhHHHHHHH
Q 010630 367 ISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLN 446 (505)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~ 446 (505)
++.++..++.++..+.. . +.+.+++..++.|++.+. ......++.+..|+ ++|++..++..
T Consensus 72 ~~~~~~~i~~~~~~~~~--------------~--~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~--~~r~~~~~~~~ 132 (366)
T TIGR00886 72 LSLLLLAIPCLWAGLAV--------------Q--SYSVLLLLRLFIGIAGGS-FASCMPWISFFFPK--KIQGTALGLAA 132 (366)
T ss_pred HHHHHHHHHHHHHHHHh--------------h--hHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCH--hhhhHHHHHHH
Confidence 99998888887776652 0 245556666777777554 34567888999998 89999999998
Q ss_pred HHHHHHHHHHHhhhhhhHhh
Q 010630 447 LAIVIPQIVVSMGSGPWDQL 466 (505)
Q Consensus 447 ~~~~~~~~i~~~~~g~l~~~ 466 (505)
....+|..+++.+++.+.+.
T Consensus 133 ~~~~~g~~~~~~i~~~l~~~ 152 (366)
T TIGR00886 133 GWGNMGGGVAQFVMPPIIGS 152 (366)
T ss_pred HHhHHHHHHHHHHHHHHHHH
Confidence 88888888888887777653
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.9e-10 Score=111.02 Aligned_cols=149 Identities=14% Similarity=0.079 Sum_probs=119.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHH
Q 010630 31 RKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAIS 110 (505)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~ 110 (505)
++.+......+...........+.|++.++.|.++.+.|.+.++..+...+..++.|++.| |+|+|+.+.+ +.+.
T Consensus 205 ~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~----r~g~~~~l~~-~~~~ 279 (382)
T TIGR00902 205 PMNLRFLAAVCLIQGAHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQ----NCSARDLLLI-SAIA 279 (382)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHh----hCCHHHHHHH-HHHH
Confidence 3444444444555556666677889999999999999999999999999999999999999 9999987765 6666
Q ss_pred HHHHHHHHhcccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHH-HHHHHH
Q 010630 111 IAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFS-LFMAVG 189 (505)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~~~g 189 (505)
..+....+.+.++. +.++....+.|+..+...+....++.+. |+++|+ +..++.+ ...++|
T Consensus 280 ~~~~~~~~~~~~~~---------------~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~--~~q~~~~~~~~g~g 341 (382)
T TIGR00902 280 CVGRWAIIGAIEAF---------------PLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIA--KLQALYNALAMGGL 341 (382)
T ss_pred HHHHHHHHHhHhhH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHH--HHHHHHHHHHHHHH
Confidence 77777666666664 6677788899999999999999999998 888888 8888875 567899
Q ss_pred HHHHhhccccccc
Q 010630 190 NILGYATGSFSGW 202 (505)
Q Consensus 190 ~~ig~~l~~~~~~ 202 (505)
..+|+.++|.+.+
T Consensus 342 ~~~g~~~~G~l~~ 354 (382)
T TIGR00902 342 IAIFTAFAGFIYP 354 (382)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.3e-09 Score=102.07 Aligned_cols=132 Identities=14% Similarity=0.000 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHH
Q 010630 339 MLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAI 418 (505)
Q Consensus 339 ~~~~~~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 418 (505)
....+...++.++.|++.||+|||+.+..+.++.+++.++..+.+ +.+..++...+.|++.+.
T Consensus 49 s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~~-----------------~~~~~~~~~~l~G~~~g~ 111 (394)
T PRK03699 49 TFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFSH-----------------SLALFSIAMFVLGVVSGI 111 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcc-----------------hHHHHHHHHHHHHHhhHh
Confidence 345667788899999999999999999988888888777766652 456667777888888888
Q ss_pred HhhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHH
Q 010630 419 TYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAI 490 (505)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 490 (505)
..+...+++.|..|+ ++|+...+..+....++..++|.+.+.+.+.. .+++..|.+.++..++..++.+
T Consensus 112 ~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~gw~~~f~~~~~~~~~~~~~~~ 180 (394)
T PRK03699 112 TMSIGTFLITHVYEG--KQRGSRLLFTDSFFSMAGMIFPIIAAYLLARS-IEWYWVYACIGLVYVAIFILTL 180 (394)
T ss_pred hccchhHHhhhhccc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHHHH
Confidence 887888899999988 88999999888888899999999998877542 1256677766666555544433
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.1e-09 Score=94.50 Aligned_cols=146 Identities=12% Similarity=0.105 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhH-HHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHH
Q 010630 33 LLKVASVAGGIQFGWALQLSLLTPY-VQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISI 111 (505)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~ 111 (505)
.|.+....+.....+.-....-|.+ .+.+|+|+...+.+.+......++.+|+.|.++| |+|++..++..+.+.+
T Consensus 266 fw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~D----k~G~n~~wv~~a~~~t 341 (459)
T KOG4686|consen 266 FWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISD----KYGFNLWWVASACILT 341 (459)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHh----hhcceehhHHHHHHHH
Confidence 4444444444444444444455555 4789999999999999999999999999999999 9999988888777777
Q ss_pred HHHHHHHhcccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHH
Q 010630 112 AVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNI 191 (505)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 191 (505)
+.+-...+++. +--..+..+.|+..+......+..++.+.|+++.| .+.+..+...++|-.
T Consensus 342 l~~H~~l~Ft~-----------------lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLG--Taygf~qsIqNLgla 402 (459)
T KOG4686|consen 342 LLGHSGLFFTF-----------------LSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLG--TAYGFIQSIQNLGLA 402 (459)
T ss_pred HHHhhhHHhhh-----------------ccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhc--chHHHHHHHHhhhhh
Confidence 66655444321 22236677778888887777889999999999999 899999999999999
Q ss_pred HHhhcccccc
Q 010630 192 LGYATGSFSG 201 (505)
Q Consensus 192 ig~~l~~~~~ 201 (505)
+.+.+++++.
T Consensus 403 ~i~Iiag~i~ 412 (459)
T KOG4686|consen 403 FIPIIAGFIA 412 (459)
T ss_pred HHhhhhheee
Confidence 9999988843
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.2e-09 Score=104.88 Aligned_cols=141 Identities=13% Similarity=0.023 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHH
Q 010630 338 LMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLA 417 (505)
Q Consensus 338 ~~~~~~~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 417 (505)
.....+...++.++.|+++||+|+|+.+..+.++.+++.+.+.+.. ....+.+..++...+.|++.+
T Consensus 69 ~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~-------------~~~~~~~~~~~~~~l~gi~~g 135 (452)
T PRK11273 69 LSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVP-------------WATSSIAVMFVLLFLCGWFQG 135 (452)
T ss_pred HHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhh-------------cccccHHHHHHHHHHHHHHHh
Confidence 3446777788899999999999999999999888888877766552 011134556666777888877
Q ss_pred HHhhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHH-HHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHhccC
Q 010630 418 ITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIV-VSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPR 495 (505)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i-~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (505)
...+.....+.+.+|+ ++||+++|+.+....+|..+ +|.+...+....+ +...|++.+++.++..++..++.|+
T Consensus 136 ~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g--w~~~f~i~~~~~~~~~~l~~~~~~~ 210 (452)
T PRK11273 136 MGWPPCGRTMVHWWSQ--KERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFND--WHAALYMPAFAAILVALFAFAMMRD 210 (452)
T ss_pred ccchHHHHHHHHhCCh--HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcc--HHHHHHHHHHHHHHHHHHHHHHccC
Confidence 7766666778888888 89999999999998888654 5544333332222 5567777666666655555555444
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.6e-10 Score=113.80 Aligned_cols=173 Identities=10% Similarity=0.001 Sum_probs=115.3
Q ss_pred HHHHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHHhccccccccc
Q 010630 49 LQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLL 128 (505)
Q Consensus 49 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (505)
....+.|.+.++.|.+..+.++......+...++.++.|+++| |+|||+.+... .....++.+.+.+.....
T Consensus 302 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--- 373 (481)
T TIGR00879 302 AIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVD----RFGRRPLLLIG-AAGMAICLFVLGILGASF--- 373 (481)
T ss_pred ehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHH----HhcchHHHHHH-HHHHHHHHHHHHHHhhcc---
Confidence 3455677778889999988889988999999999999999999 99999887764 344444444333110000
Q ss_pred CCCCCCcchhHHHHHHHHHHHHhhhhc-ccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhhcccccccccccc
Q 010630 129 GDRGDFRPRAIAVFVFGFWILDVANNM-TQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILP 207 (505)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l~~~~~~~~~~~ 207 (505)
......... ...+....+...+.+. ..+...+++.|.+|+++|+ +++++.....++|.++++.+.+.+....
T Consensus 374 -~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~~~~~~~~~~lg~~i~~~~~~~~~~~~--- 446 (481)
T TIGR00879 374 -VTGSSKSSG-NVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRP--KGISIAVAANWLANFIVGFLFPTMLESI--- 446 (481)
T ss_pred -cCCcccchh-HHHHHHHHHHHHHHHccccCeehhhhhccCChHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhc---
Confidence 000000001 1222222222222332 3355567789999999999 9999999999999999998876632211
Q ss_pred ccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCC
Q 010630 208 FTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPL 248 (505)
Q Consensus 208 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~ 248 (505)
+|++.|++.+++.++..++..++.||+++
T Consensus 447 ------------~~~~~f~~~~~~~~~~~i~~~~~~~~~~~ 475 (481)
T TIGR00879 447 ------------GVGGVFIFFGGLNVLGLIFVYFFLPETKG 475 (481)
T ss_pred ------------CccceehhHHHHHHHHHHHHheecccCCC
Confidence 78888888887777777777777777553
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.3e-08 Score=98.08 Aligned_cols=108 Identities=16% Similarity=0.065 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHH
Q 010630 340 LNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAIT 419 (505)
Q Consensus 340 ~~~~~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 419 (505)
+..+...+..+..|++.||+|.|+++.++.++..+..+...+.. + ...++.+.+++..++.|++ +..
T Consensus 78 i~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~---~---------~~~~s~~~lli~r~l~Gig-g~~ 144 (462)
T PRK15034 78 LPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAV---Q---------NPNTPFGIFIVIALLCGFA-GAN 144 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH---c---------ccCCCHHHHHHHHHHHHHH-HHh
Confidence 35566677788889999999999999999888888777766541 0 0011567788888889987 667
Q ss_pred hhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhh
Q 010630 420 YSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGP 462 (505)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~ 462 (505)
++.....+++.+|+ +++|+++|+.....++|..+++.+...
T Consensus 145 f~~~~~~vs~wfp~--~~rG~A~Gi~~g~G~~G~~l~~~l~p~ 185 (462)
T PRK15034 145 FASSMGNISFFFPK--AKQGSALGINGGLGNLGVSVMQLVAPL 185 (462)
T ss_pred HHHHHHHHHHHCCH--hHhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 77888899999998 999999999865555666555544443
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.7e-09 Score=106.08 Aligned_cols=121 Identities=16% Similarity=0.091 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHH
Q 010630 338 LMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLA 417 (505)
Q Consensus 338 ~~~~~~~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 417 (505)
.....+...++.++.|++.||+|||+.+..+.++.+++.++..+.. +.+..++...+.|++.+
T Consensus 61 ~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~-----------------~~~~l~~~~~l~G~~~~ 123 (496)
T PRK03893 61 ISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAP-----------------GYWTLFIARLVIGMGMA 123 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHh-----------------HHHHHHHHHHHHHHHHH
Confidence 3345677788889999999999999999999888888887777653 46667778888899888
Q ss_pred HHhhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHH
Q 010630 418 ITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGG 479 (505)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~ 479 (505)
...+....++.|.+|+ ++|++++++.+....+|..++|.+.+.+.+..+ +...|.+..
T Consensus 124 ~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~--w~~~f~~~~ 181 (496)
T PRK03893 124 GEYGSSATYVIESWPK--HLRNKASGFLISGFSIGAVVAAQVYSLVVPVWG--WRALFFIGI 181 (496)
T ss_pred HHHHHHHHHHHHHcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--HHHHHHHHH
Confidence 8888888999999998 999999999999999999999999999988765 455565543
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.1e-08 Score=101.52 Aligned_cols=135 Identities=14% Similarity=0.035 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHH
Q 010630 339 MLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAI 418 (505)
Q Consensus 339 ~~~~~~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 418 (505)
....+...++.++.|+++||+|||+.+..+.++.+++.++..+.. +.+.+++..++.|++.+.
T Consensus 78 ~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~-----------------s~~~l~~~r~l~G~~~~~ 140 (476)
T PLN00028 78 IASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVS-----------------SATGFIAVRFFIGFSLAT 140 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhc-----------------CHHHHHHHHHHHHHHHHh
Confidence 335566677889999999999999999888888887777666652 345555666777877765
Q ss_pred HhhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhc-------CCCchHHHHHHHHHHHHHHHHHH
Q 010630 419 TYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFG-------GGNSPAFAVGGISALAGGLIAIL 491 (505)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g-------~~~~~~~~~~~~~~~~~~~~~~~ 491 (505)
.. ....++++.+|+ ++||+++|+.+....+|..+++.+.+.+.+... .++...|.+.+++.++..+..++
T Consensus 141 ~~-~~~~~i~~~~~~--~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~ 217 (476)
T PLN00028 141 FV-SCQYWMSTMFNG--KIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLT 217 (476)
T ss_pred hH-HHHHHHHHhcCh--hheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 43 345678899998 899999999988888888888777666543210 12566777777776666555554
Q ss_pred hc
Q 010630 492 AI 493 (505)
Q Consensus 492 ~~ 493 (505)
+.
T Consensus 218 ~~ 219 (476)
T PLN00028 218 LG 219 (476)
T ss_pred Hc
Confidence 43
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.3e-07 Score=87.55 Aligned_cols=375 Identities=14% Similarity=0.037 Sum_probs=180.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHhCC-CchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHH---HHH
Q 010630 34 LKVASVAGGIQFGWALQLSLLTPYVQELGI-PHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVC---GAI 109 (505)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~---~~~ 109 (505)
+.+....+....+.-+.....+.++.++.- +--..+.....-.+..++..|..|.+.| |..|.+..... --+
T Consensus 5 ~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD----~~~Rl~~~~~~l~~Qn~ 80 (432)
T PF06963_consen 5 WRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWID----RSPRLKVIRTSLVVQNL 80 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHh----CCcchhhHHHHHHHHHH
Confidence 334445555666666777777777766632 3333444444556777889999999999 77776654331 112
Q ss_pred HHHHHHHHHh--cccccccccCCCCCCcchhHHHHH---HHHHHHHhhhhcccc-hhhhHhhhcc--cccccchhhHhHH
Q 010630 110 SIAVAVLLIG--LSADIGWLLGDRGDFRPRAIAVFV---FGFWILDVANNMTQG-PCRALLADLT--GKDHRRTRVANAY 181 (505)
Q Consensus 110 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~g~~~~~~~~-~~~~~~~~~~--~~~~r~~~~~~~~ 181 (505)
..+++..++. +..... .+........++. +..++-.++..+... .-.=|+..+. +++.+. +.++.
T Consensus 81 sv~~s~~~~~~l~~~~~~-----~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La--~~NA~ 153 (432)
T PF06963_consen 81 SVAASCALFLLLLSYPSS-----SSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALA--RMNAT 153 (432)
T ss_pred HHHHHHHHHHHHHhCCcc-----ccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHH--HHHHH
Confidence 2222222211 111100 0000111111111 111111222222111 1233444444 334455 78888
Q ss_pred HHHHHHHHHHHHhhccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhcccc----CCC---CCCCCC
Q 010630 182 FSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHE----VPL---GSHDQS 254 (505)
Q Consensus 182 ~~~~~~~g~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e----~~~---~~~~~~ 254 (505)
+.-.-.+..+++|.+.|.+.... +......+.++..++...+-.+++.. .|. ++.+++
T Consensus 154 mRRIDL~ckllaPl~vG~l~t~~---------------s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~L~~~~~~~~ 218 (432)
T PF06963_consen 154 MRRIDLFCKLLAPLFVGLLMTFA---------------SPVIAAIFIAGWNLASVFVEYFLLARVYNSVPALAVKKRSSE 218 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcc---------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHhcCCCCCcc
Confidence 88888889999999988743322 55666666666666655554444321 111 111111
Q ss_pred CCCcccCC-CCCcchHHHHHHHHHHHHhcc---------cHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCc
Q 010630 255 APFSEEGH-EQSSDVHEAFLWELFGTFRYF---------SGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEG 324 (505)
Q Consensus 255 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (505)
++++++++ .+..++.....+...+.+++. .+.+.. .+...+.++....+..-.+.|+..
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~Y~~q~vfla-s~alalLY~TVLsf~~lmt~yl~~---------- 287 (432)
T PF06963_consen 219 SESSSDEESSSESSSDPSILKRLWNPLRTIIRGWRTYFRQPVFLA-SFALALLYFTVLSFGGLMTAYLKS---------- 287 (432)
T ss_pred ccccccccccccccchhhHHHHHHHHHHHHhccHHHHHhCHHHHH-HHHHHHHHHHHhcCcHHHHHHHHH----------
Confidence 11110000 001111111112222111110 022222 222222222223333334444421
Q ss_pred ccccccchhhHHHHH--HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCC-CChh
Q 010630 325 QNYATGVRMGALGLM--LNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLP-PNGI 401 (505)
Q Consensus 325 ~~~~~~~~~~~~~~~--~~~~~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 401 (505)
.|.+...++.. ..++.++.+.++.+++.+|+|..|.-.++.....+++.+..... +.... | ...+
T Consensus 288 ----~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~-~~~~~-------~~~~~s 355 (432)
T PF06963_consen 288 ----QGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSF-WAPGS-------PFSSIS 355 (432)
T ss_pred ----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHH-hcCCC-------CchhhH
Confidence 13333333332 35677788889999999999999888777766655544433221 11110 1 1112
Q ss_pred HHHHHHHHHHHhhHHHHHhhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhh
Q 010630 402 VIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMG 459 (505)
Q Consensus 402 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~ 459 (505)
...++...++-=+|.=..--....+++|.+|+ ++||+..|+-+..+++...+--.+
T Consensus 356 ~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~--~~Rg~v~gvq~sl~~lf~ll~~~~ 411 (432)
T PF06963_consen 356 AYLLLGGIALSRIGLWSFDLAVTQIMQENVPE--SERGAVSGVQNSLQSLFELLSFVL 411 (432)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHhhcccCCH--HHhhHHHHHHHHHHHHHHHHHHHH
Confidence 22233333333333333334556788899999 999999999988888776654443
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.2e-07 Score=88.81 Aligned_cols=340 Identities=12% Similarity=0.127 Sum_probs=191.2
Q ss_pred HHhhhhHHHH--hCCCchhHH-HHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHHhcccccccc
Q 010630 51 LSLLTPYVQE--LGIPHAWAS-IIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWL 127 (505)
Q Consensus 51 ~~~~~~~~~~--~g~s~~~~g-~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (505)
-+++.+|+.+ .|++..++. -+.-+..-.+.....+...+.| ..|.|+.+++ ..+..++...++.+.++.
T Consensus 23 EPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd----~l~Ykpviil-~~~~~i~t~~lll~~~sv--- 94 (412)
T PF01770_consen 23 EPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTD----YLRYKPVIIL-QALSYIITWLLLLFGTSV--- 94 (412)
T ss_pred CccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHH----HhhhhHHHHH-HHHHHHHHHHHHHHHCcH---
Confidence 4577777633 788888764 3334444555667777888999 9988866665 555555666666566665
Q ss_pred cCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhhcccccccccccc
Q 010630 128 LGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILP 207 (505)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l~~~~~~~~~~~ 207 (505)
..+-+.-+..|...+. ..+..+++-...|+++-. ++.+......-+|..++..+|..+....
T Consensus 95 ------------~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq--~vts~~raa~l~g~~~s~~lgQllvs~~--- 156 (412)
T PF01770_consen 95 ------------LAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQ--KVTSYTRAATLVGRFISSLLGQLLVSFG--- 156 (412)
T ss_pred ------------HHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhc---
Confidence 5666666677766665 566778888888877766 8888888888888888877776622111
Q ss_pred ccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCC---CCC-----------CC-CCcccC-------CCCC
Q 010630 208 FTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGS---HDQ-----------SA-PFSEEG-------HEQS 265 (505)
Q Consensus 208 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~---~~~-----------~~-~~~~~~-------~~~~ 265 (505)
..++....++......+..++. +++|.+++.. ++. ++ ++..++ ....
T Consensus 157 ----------~~sy~~L~~isl~~~~~a~~~~-~fLP~~~~S~~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (412)
T PF01770_consen 157 ----------GVSYFQLNYISLASVSLALLIA-LFLPMPKRSLFFHRKPPAEQDANESESDKMNESPESSSSTEKSPSTE 225 (412)
T ss_pred ----------CCCHHHHHHHHHHHHHHHHHHH-HHcCCCCcccceeccCccccccccccccccccccccccccccCcccc
Confidence 0155555555554444443433 3444433210 000 00 000000 0001
Q ss_pred cchHHHH----HHHHHHHHhcccHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHH
Q 010630 266 SDVHEAF----LWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLN 341 (505)
Q Consensus 266 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (505)
....+.. ++++++..++ +.++...+.-.+...++.-...|..... +++ .+......|+.++. ...
T Consensus 226 ~~~~~~~l~~l~~~~~~~y~~--~~ll~WSlWWa~atcgy~qv~nYvQ~LW-~~v--~~~~~~~vYNG~Ve------A~~ 294 (412)
T PF01770_consen 226 SSSRKSVLRLLWKDFKSCYSN--PRLLLWSLWWAFATCGYYQVINYVQSLW-DTV--PPSDNESVYNGAVE------AAS 294 (412)
T ss_pred cchHHHHHHHHHHHHHHHhcC--chHHHHHHHHHHHHhHHHHHHHHHHHHH-Hhc--CCCCCCcccchHHH------HHH
Confidence 1112222 3344444445 5555555544444444444444443332 122 12222234443222 223
Q ss_pred HHHHHHHHHHHHHHHHHhcchHHHH--HHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHH
Q 010630 342 SVVLGITSVLMEKLCRKWGAGFIWG--ISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAIT 419 (505)
Q Consensus 342 ~~~~~i~~~~~g~l~~r~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 419 (505)
.+.+.++++..|++..++.+..-+. ...++.+..++++.... +.|..++..++++..+...
T Consensus 295 tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~-----------------~Iwv~Y~~yIif~~~y~fl 357 (412)
T PF01770_consen 295 TLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFTG-----------------NIWVCYAGYIIFRSLYMFL 357 (412)
T ss_pred HHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhh-----------------HHHHHHHHHHHHHHHHHHH
Confidence 4445667777788755555533333 33444444555555553 6888888888888888887
Q ss_pred hhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHH
Q 010630 420 YSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVS 457 (505)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~ 457 (505)
.++...-++..... +.-|..+|+.++...+-+.+-.
T Consensus 358 iTiA~~qIA~~l~~--e~yaLVFGiNtf~Al~LQtilT 393 (412)
T PF01770_consen 358 ITIASFQIAKNLSE--ERYALVFGINTFVALVLQTILT 393 (412)
T ss_pred HHHHHHHHHHhccc--cceeeeeeeHHHHHHHHHHheE
Confidence 77777777777776 8889999977666555454433
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.7e-10 Score=106.38 Aligned_cols=137 Identities=17% Similarity=0.111 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHH
Q 010630 338 LMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLA 417 (505)
Q Consensus 338 ~~~~~~~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 417 (505)
.....+...++.++.|+++||+|||+.+..+.++.+++.++..+.. +.+..++...+.|++.+
T Consensus 36 ~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~g~~~~ 98 (379)
T TIGR00881 36 LSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFST-----------------SLWVMAALWALNGIFQG 98 (379)
T ss_pred HHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhh-----------------hHHHHHHHHHHHHhhcc
Confidence 3446677788899999999999999999999988888888777763 46677778888899888
Q ss_pred HHhhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHH-hhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHhccC
Q 010630 418 ITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVS-MGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPR 495 (505)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~-~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (505)
...+...+++.|..|+ ++|++..++.+....+|..++| .+.+.+.+..+ ....|.+.+++.++..++.....++
T Consensus 99 ~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (379)
T TIGR00881 99 MGWPPCGRTVTKWFSR--SERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYS--WHWVFIVPGIIAIIVSLICFLLLRD 173 (379)
T ss_pred ccCCchHHHHHHhcCH--hhheeeEeehhccchhHHHHHHHHHHHHHHhcCC--chhHHHHHHHHHHHHHHHHheeeCC
Confidence 8888889999999998 8999999999999999999999 46666666544 4556776666666555555554443
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=6.8e-09 Score=101.95 Aligned_cols=121 Identities=16% Similarity=0.036 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHH
Q 010630 338 LMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLA 417 (505)
Q Consensus 338 ~~~~~~~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 417 (505)
.....+...++.++.|++.||+|||+.+..+.++.+++.++..+.+ +.+..++...+.|++.+
T Consensus 59 ~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~-----------------~~~~l~~~r~l~G~g~g 121 (426)
T PRK12307 59 ATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLAS-----------------GVIMLTLSRFIVGMGMA 121 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHh-----------------HHHHHHHHHHHHHHHHh
Confidence 3446677788899999999999999999999999988888777764 46777788889999999
Q ss_pred HHhhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHH
Q 010630 418 ITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGG 479 (505)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~ 479 (505)
...+....++.|..|+ ++|+++.++.+....+|..+++.+.+.+.+..+ ....|++..
T Consensus 122 ~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~--w~~~f~i~~ 179 (426)
T PRK12307 122 GEYACASTYAVESWPK--HLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYG--WRAAFFVGL 179 (426)
T ss_pred hHHHHHHHHHHHhCCH--hHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCC--HHHHHHHHH
Confidence 8888888999999998 899999999999999999999999888887765 555665543
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.3e-08 Score=97.08 Aligned_cols=114 Identities=11% Similarity=-0.126 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhH
Q 010630 336 LGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGP 415 (505)
Q Consensus 336 ~~~~~~~~~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 415 (505)
+......+...++++..+++.||+|||+.+..+.++.+++..++.... ...+.+..++..++.|++
T Consensus 42 ~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~--------------~~~~~~~~l~~~~l~G~g 107 (410)
T TIGR00885 42 LVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAA--------------EIMNYTLFLVGLFILTAG 107 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH--------------hhccHHHHHHHHHHHHhh
Confidence 334456777889999999999999999999999999988887754431 011456677778889999
Q ss_pred HHHHhhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHh
Q 010630 416 LAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQ 465 (505)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~ 465 (505)
.+...+....++.+..|+ +++++..++.+....+|..++|.+++.+..
T Consensus 108 ~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~ 155 (410)
T TIGR00885 108 LGFLETAANPYILVMGPE--STATRRLNLAQSFNPFGSIIGMVVAQQLIL 155 (410)
T ss_pred HHHHHhhhhHHHHHHCCH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999998888889998888 889999999999999999999999998864
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.08 E-value=9.6e-09 Score=99.76 Aligned_cols=182 Identities=14% Similarity=0.098 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Q 010630 285 GTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFI 364 (505)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~~r~g~~~~ 364 (505)
|.+|......++.+.++..+..+.+.|+.++ ++.++. ...+......+...+++++.|+++||+|||+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~----------~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~ 70 (396)
T TIGR00882 2 TNFWMFGLFFFLYFFIMSAYFPFFPIWLHDV-NGLSKT----------DTGIVFSCISLFSILFQPLFGLISDKLGLKKH 70 (396)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH
Confidence 6788888888888888888888888888543 232221 11233445778888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCC--hhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhcccccchhHHH
Q 010630 365 WGISNILMALCFLAMLILYYVAIHMDYRGHDLPPN--GIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSL 442 (505)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 442 (505)
+..+....++........... +.. ...+...+..++.|++.+...+....+..+.. ++++..+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----~~~~~~~ 135 (396)
T TIGR00882 71 LLWIISGLLVLFAPFFIYVFG-----------PLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS----RNSNFEY 135 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHhh-----------hHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh----hhccccc
Confidence 887665554433322211000 000 01122233344555555555555545544432 3345567
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHhccC
Q 010630 443 GVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPR 495 (505)
Q Consensus 443 g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (505)
|.......+|..++|.++|.+.+. + ....|.+.+++.++..++.+...++
T Consensus 136 g~~~~~~~~g~~~g~~~~g~l~~~-~--~~~~f~~~~~~~~~~~~~~~~~~~~ 185 (396)
T TIGR00882 136 GKARMFGCVGWALCASIAGILFSI-D--PQIVFWLGSGFALILMLLLMFAKPK 185 (396)
T ss_pred chhhhhcccHHHHHHHHHhhhhcc-C--chHHHHHHHHHHHHHHHHHHHhCCC
Confidence 777788889999999999988764 3 5567777776666665555444443
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1e-09 Score=105.22 Aligned_cols=190 Identities=16% Similarity=0.098 Sum_probs=128.5
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHH
Q 010630 32 KLLKVASVAGGIQF-GWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAIS 110 (505)
Q Consensus 32 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~ 110 (505)
.........++.++ +......|...+.++.|++..++.++.....+...+...+..++.| |+|||+.++....+.
T Consensus 270 ~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid----~~gRRpLll~~~~~~ 345 (485)
T KOG0569|consen 270 PLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLID----RLGRRPLLLISLSLM 345 (485)
T ss_pred HHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCCcHHHHHHHHHH
Confidence 34444445556655 5555667777888999999999999999999999999999999999 999998877755554
Q ss_pred HHHHHHHHhcccccccccCCCCCCcchhHH-HHHHHHHHHHhhhhcccc-hhhhHhhhcccccccchhhHhHHHHHHHHH
Q 010630 111 IAVAVLLIGLSADIGWLLGDRGDFRPRAIA-VFVFGFWILDVANNMTQG-PCRALLADLTGKDHRRTRVANAYFSLFMAV 188 (505)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 188 (505)
.+..+++. .....- ........ ..++..++..++.+.... ..+-+.+|++|++.|. .++++......+
T Consensus 346 ~~~~~~~~-~~~~l~-------~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~--aa~s~~~~~~w~ 415 (485)
T KOG0569|consen 346 AVALLLMS-IALFLS-------NSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARS--AAQSVATAVNWL 415 (485)
T ss_pred HHHHHHHH-HHHHHH-------HHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchH--HHHHHHHHHHHH
Confidence 44443332 221110 00001112 224444555555555544 4477889999999999 888888888887
Q ss_pred HHHHHhhccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCC
Q 010630 189 GNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSH 251 (505)
Q Consensus 189 g~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~ 251 (505)
.+.+-... +|.+.+.. |- ..|.+..+.+++..+..++.+||++.+..
T Consensus 416 ~~fiv~~~---------fp~l~~~~------g~-~~filF~i~~~~~~i~~~~~lPETkgr~~ 462 (485)
T KOG0569|consen 416 SNFIVGFA---------FPPLQNVI------GP-YVFILFVIPLAIFLIYLYRYLPETKGRTP 462 (485)
T ss_pred HHHHHHHH---------HHHHHHHh------cc-hhhHHHHHHHHHHHHHHHHhCcccCCCCH
Confidence 77765544 33332221 22 56777888888899999999999986543
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.3e-08 Score=98.40 Aligned_cols=131 Identities=13% Similarity=0.026 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHh-----cchHH-HHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHh
Q 010630 347 ITSVLMEKLCRKW-----GAGFI-WGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITY 420 (505)
Q Consensus 347 i~~~~~g~l~~r~-----g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 420 (505)
+..++++.++||+ |||+. +..+.+..+++...+.+.. | ..+.+.+.+...+.+++.+...
T Consensus 60 ~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~-------------~-~~~l~~l~~~~~l~~~~~a~~~ 125 (491)
T PRK11010 60 VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLE-------------P-GTQLRWLAALAVVIAFCSASQD 125 (491)
T ss_pred HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcC-------------C-cchHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999 99886 5566666666666665552 2 1245566666777788888777
Q ss_pred hchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhh-hcCCCchHHHHHHHHHHHHHHHHHHhccCC
Q 010630 421 SVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQL-FGGGNSPAFAVGGISALAGGLIAILAIPRS 496 (505)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (505)
+...++..|.+|+ ++||++.++......+|..+++.+.+++.+. .| +...|++.+++.++..+..+. .||+
T Consensus 126 i~~~a~~~~~~~~--~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~G--Wr~~f~i~a~l~ll~~l~~~~-~~e~ 197 (491)
T PRK11010 126 IVFDAWKTDVLPA--EERGAGAAISVLGYRLAMLVSGGLALWLADRYLG--WQGMYWLMAALLIPCIIATLL-APEP 197 (491)
T ss_pred HHHHHHHHHhcCh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC--HHHHHHHHHHHHHHHHHHHHh-cCCC
Confidence 7888999999998 8999999999999999999999999999883 44 667787777766666554443 4544
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.7e-09 Score=104.83 Aligned_cols=174 Identities=14% Similarity=0.128 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHhhhhHH-HHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHHh
Q 010630 41 GGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIG 119 (505)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~ 119 (505)
++..+..+....+.|.|. +++|.+......+..+..+...++.++.|+++| |+||||.++... +...++...+.
T Consensus 260 ~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~D----r~grr~~~~~~~-~~~~~~~~~~~ 334 (438)
T PRK09952 260 LCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLAD----RFGRRRVYITGA-LIGTLSAFPFF 334 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCchHHHHHHH-HHHHHHHHHHH
Confidence 333445555666778776 568888876665666666777888899999999 999998776543 33333322221
Q ss_pred cccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHH-HHHHHHHHHHHhhccc
Q 010630 120 LSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYF-SLFMAVGNILGYATGS 198 (505)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~~~~g~~ig~~l~~ 198 (505)
..... . ...+..++..++.+++.+...+..+++++|.+|.+.|+ .+.++. .....+|..++|.+.+
T Consensus 335 ~~~~~--------~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~--tg~g~~~~~~~~lgg~~~p~i~g 401 (438)
T PRK09952 335 MALEA--------Q---SIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRY--SGAGVGYQVASVVGGGFTPFIAA 401 (438)
T ss_pred HHHHc--------C---ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhH--HHHhHHHHHHHHHHHHHHHHHHH
Confidence 11000 0 01123334445556777777777889999999999998 566664 3444577778887776
Q ss_pred cccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccC
Q 010630 199 FSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEV 246 (505)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~ 246 (505)
++... ..++|+..+...+++.++..+.. +.+||+
T Consensus 402 ~l~~~-------------~~~~~~~~~~~~~~~~~i~~v~~-~~~~~~ 435 (438)
T PRK09952 402 ALVTY-------------FGGSWHSVAIYLLAGCLISAMTA-LLMKDN 435 (438)
T ss_pred HHHHh-------------cCCCchHHHHHHHHHHHHHHHHH-HHcccc
Confidence 63211 01257777766665555444443 445653
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2e-09 Score=99.06 Aligned_cols=184 Identities=18% Similarity=0.166 Sum_probs=125.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHH
Q 010630 30 LRKLLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGA 108 (505)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~ 108 (505)
.++.|.++..++...-++-....++|.|. +++|.++.+.|.....+.+.+.+..|.+|+++| |+|.+|..+....
T Consensus 217 ~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsD----R~Gg~rv~~~~f~ 292 (417)
T COG2223 217 NKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSD----RIGGRRVTLAVFV 292 (417)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhh----hccchhHHHHHHH
Confidence 45667777666655445555667888876 779999999999999999999999999999999 9999988887555
Q ss_pred HHHHHHHHHHhcccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHH
Q 010630 109 ISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAV 188 (505)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 188 (505)
.+.+...++....+.. .........+.......+..+........+++.++|+ +-+ .+.|+.+...++
T Consensus 293 ~~~~~~~~l~~~~~~~---------~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-~~G--~v~G~vga~G~l 360 (417)
T COG2223 293 GMALAAALLSLFLTGF---------GHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK-ETG--AVTGIVGAIGGL 360 (417)
T ss_pred HHHHHHHHHHcccccc---------ccCcchHHHHHHHHHHHHHhccCcchheeechHHHHh-hhh--HHHHHHHHhccc
Confidence 5444444444333221 1112234444545555677777777888899999885 445 678888888777
Q ss_pred HHHHHhhccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhcc
Q 010630 189 GNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAA 243 (505)
Q Consensus 189 g~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 243 (505)
|...-|..-+...... +.+...|++...+.+++.++.+...
T Consensus 361 GGf~lp~~~g~~~~~t--------------g~~~~~f~~~~~~~~~a~v~~~~~y 401 (417)
T COG2223 361 GGFFLPLAFGVSLDLT--------------GSYTGAFMLLLAFYLVALVLTWALY 401 (417)
T ss_pred cccchhHHHHHHHHhc--------------ccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7655544433321111 2588888888877777777665543
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.2e-09 Score=109.13 Aligned_cols=173 Identities=15% Similarity=0.084 Sum_probs=113.0
Q ss_pred HHHHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHHhccccccccc
Q 010630 49 LQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLL 128 (505)
Q Consensus 49 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (505)
....+.|.+.++.|.+....++......+...++.++.|+++| |+|||+.++.+. +...++.+.+......
T Consensus 289 ~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~d----r~g~r~~~i~~~-~~~~v~~~~l~~~~~~---- 359 (479)
T PRK10077 289 VVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVD----KFGRKPLQIIGA-LGMAIGMFSLGTAFYT---- 359 (479)
T ss_pred HHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHH----HhcChHHHHHhH-HHHHHHHHHHHHHHhc----
Confidence 3345667777889998877777777778888999999999999 999998777644 4444444443322110
Q ss_pred CCCCCCcchhHHHHHHHHHHHHhhhhcc-cchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhhcccccccccccc
Q 010630 129 GDRGDFRPRAIAVFVFGFWILDVANNMT-QGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILP 207 (505)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l~~~~~~~~~~~ 207 (505)
.. .. .......++.+++.+.. .+..+++++|.+|+++|+ +++++......+|..+++.+.+..... +
T Consensus 360 ----~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~--~~~g~~~~~~~~g~~~~~~~~p~~~~~---~ 427 (479)
T PRK10077 360 ----QA--PG-IVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRG--KALAIAVAAQWIANYFVSWTFPMMDKN---S 427 (479)
T ss_pred ----Cc--cc-HHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHH--HHHHHHHHHHHHHHHHHHHHhHHHHhc---c
Confidence 00 01 12222333334444332 355689999999999999 999999999999998887664431100 0
Q ss_pred ccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCC
Q 010630 208 FTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPL 248 (505)
Q Consensus 208 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~ 248 (505)
+..+ ..+|++.|++.+++.++..++.+++.||+++
T Consensus 428 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 462 (479)
T PRK10077 428 WLVA------HFHNGFSYWIYGCMGVLAALFMWKFVPETKG 462 (479)
T ss_pred chhh------hccCccHHHHHHHHHHHHHHHHHhccccCCC
Confidence 0000 1267778888887777777777677777654
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.1e-09 Score=103.00 Aligned_cols=186 Identities=13% Similarity=0.078 Sum_probs=130.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHH-HHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCc--chhHHHHH
Q 010630 32 KLLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRR--RPFIVCGA 108 (505)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr--~~~~~~~~ 108 (505)
++..+.+..+...-+......+...|. +++|++..+...+..+..+.+.+++.++|++.| |+|.| +.++....
T Consensus 282 ~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~----r~g~k~~~~l~~~l~ 357 (477)
T PF11700_consen 282 QLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQD----RFGPKTKRTLLISLI 357 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCCchhHHHHHHHH
Confidence 344444444544445566666667776 589999999999999999999999999999999 99988 66665444
Q ss_pred HHHHHHHHHHh-cccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHH
Q 010630 109 ISIAVAVLLIG-LSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMA 187 (505)
Q Consensus 109 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 187 (505)
...++....+. +.++. .. ...-+.+.+...+.|+..|..++...++.+|+.|+++++ ..+|++.+..-
T Consensus 358 ~~~~i~~~g~~G~~~~~--------~g-~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~--efFgly~i~gk 426 (477)
T PF11700_consen 358 LWIIIPLYGLFGFWPSF--------FG-LKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREA--EFFGLYAITGK 426 (477)
T ss_pred HHHHHHHHHHHHhhhcc--------cC-cccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhh--HHHHHHHHHHH
Confidence 43333333221 11111 00 011144555666788999999999999999999999999 99999999999
Q ss_pred HHHHHHhhccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCC
Q 010630 188 VGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVP 247 (505)
Q Consensus 188 ~g~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~ 247 (505)
....+||.+.+.+.+.. ++.|..+....++.++..++. +.+++++
T Consensus 427 ~ss~lGPll~g~i~~~t--------------g~~r~g~~~l~~lf~~gl~ll-~~v~~~~ 471 (477)
T PF11700_consen 427 ASSWLGPLLFGLITDAT--------------GSQRYGFLFLLVLFLIGLILL-FFVDVEK 471 (477)
T ss_pred HHHHHHHHHHHHHHHHh--------------CCchhHHHHHHHHHHHHHHHH-hhccchh
Confidence 99999999988744332 257788777765555554444 5555443
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.4e-08 Score=92.98 Aligned_cols=134 Identities=7% Similarity=-0.077 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHH
Q 010630 338 LMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLA 417 (505)
Q Consensus 338 ~~~~~~~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 417 (505)
.........+..+..|++.||+|.|+++.++.+..++..++..+.. +...+.+.-+++|++.+
T Consensus 68 ~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~-----------------Sl~~L~i~R~llGvaEA 130 (511)
T TIGR00806 68 IPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGT-----------------SVWHMQLMEVFYSVTMA 130 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHH
Confidence 3345666778889999999999999999999999999998888875 57888899999999999
Q ss_pred HHhhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchH-HHHHHHHHHHHHHHHHHh
Q 010630 418 ITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPA-FAVGGISALAGGLIAILA 492 (505)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~ 492 (505)
... ....++.+.+|+ ++|+++.|+.+....+|.+++++++++ ...+|+..+.. ..+......++.++.+++
T Consensus 131 ~~~-A~~syI~~WfP~--kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~Ln~Isl~s~~~a~~~a~~L 202 (511)
T TIGR00806 131 ARI-AYSSYIFSLVPP--SRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYSTLNIISLVFMTFSVFLALFL 202 (511)
T ss_pred HHH-HHHHHHHHHCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHHHHHHHHHHHhC
Confidence 999 889999999999 999999999999999999999999999 44555433222 334434444455444443
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.04 E-value=9.4e-09 Score=114.06 Aligned_cols=113 Identities=14% Similarity=0.081 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHH
Q 010630 338 LMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLA 417 (505)
Q Consensus 338 ~~~~~~~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 417 (505)
..++.+...++++++|+++||+|||+++.++.++.++..++..+... .. +.+.+++..++.|++.+
T Consensus 53 ~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~------------~~--~~~~l~~~r~l~G~~~~ 118 (1146)
T PRK08633 53 NALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYY------------LG--WFWLAFAVTFLLGAQSA 118 (1146)
T ss_pred HHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHH------------Hc--cHHHHHHHHHHHHHHHH
Confidence 33456677888899999999999999998887766555544433310 00 35677788888999999
Q ss_pred HHhhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhh
Q 010630 418 ITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQL 466 (505)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~ 466 (505)
...+...+++.|.+|+ +++++++|+.+....+|..+++.+++++.+.
T Consensus 119 ~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 119 IYSPAKYGIIPELVGK--ENLSRANGLLEAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred hhchHHHhhhHHhcCc--ccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9888999999999999 9999999999999999999999999999876
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.2e-08 Score=99.19 Aligned_cols=197 Identities=14% Similarity=0.109 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHH----Hhcc
Q 010630 286 TIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCR----KWGA 361 (505)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~~----r~g~ 361 (505)
++..++...+..++++.....+.++|+. + ++.++ ...........+...+..++.|+++| |+||
T Consensus 5 ~li~~~~~~~Giq~~~~l~~~~l~~yl~-~-lg~~~----------~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GR 72 (477)
T TIGR01301 5 KLLRVASVAAGVQFGWALQLSLLTPYVQ-E-LGIPH----------AWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGR 72 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-cCCCH----------HHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCC
Confidence 3444555555666777777777787763 2 22111 11223344567788889999999999 5999
Q ss_pred hHHHHHH-HHHHHHHHHHHHHHHHHhhhccccCCCCCC---ChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhcccccc
Q 010630 362 GFIWGIS-NILMALCFLAMLILYYVAIHMDYRGHDLPP---NGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLG 437 (505)
Q Consensus 362 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 437 (505)
|+.++++ .....+++.++.+........ ...... ....+..++...+..++.....+...+++.|..|+++|+
T Consensus 73 Rrp~il~g~~~~~~~l~ll~~~~~~~~~~---~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~ 149 (477)
T TIGR01301 73 RRPFIAAGAALVAFAVILIGFAADIGHLF---GDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARR 149 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCchhhhhc---cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHH
Confidence 9998764 555555556555542100000 000000 001123344444556677777777789999999985445
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhh--Hhhhc-----------CCCchHHHHHHHHHHHHHHHHHHhccCCC
Q 010630 438 QGLSLGVLNLAIVIPQIVVSMGSGPW--DQLFG-----------GGNSPAFAVGGISALAGGLIAILAIPRSS 497 (505)
Q Consensus 438 ~g~~~g~~~~~~~~~~~i~~~~~g~l--~~~~g-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (505)
++.+++..+....+|+.+|+.+++.. .+.++ .+....|.+.+++.+++.+++.+..+|.+
T Consensus 150 ~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~ 222 (477)
T TIGR01301 150 TRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENP 222 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence 68899999999999999999998875 22211 13456788888888888888888777754
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.02 E-value=8.1e-08 Score=86.72 Aligned_cols=391 Identities=13% Similarity=0.054 Sum_probs=197.5
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceecccc-CCCCCCcchhHH
Q 010630 27 KVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRC-TSRFGRRRPFIV 105 (505)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~-~~r~Grr~~~~~ 105 (505)
+..++++..+.+.......-.+... .+|.+++.-|.|-++.+....++.= .-.-+++..+.|.. ..|+||||.+++
T Consensus 27 ~~d~~~illLl~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~a~fS~ay~P--~sLKllWaPiVDs~y~k~~GrrksWvv 103 (510)
T KOG3574|consen 27 KGDRSSILLLLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQAIFSFAYWP--FSLKLLWAPIVDSVYSKRFGRRKSWVV 103 (510)
T ss_pred hhhhhhHHHHHHHHHHcCCchhHhh-hhHHHhcCCCcchhhhhhhhhhhhH--HHHHHHHHhhhHHHHHHhhccccceee
Confidence 3445566666666666666555555 7788888888888887765543321 12234555566742 238999999987
Q ss_pred HHHHHHHHHHHHHhcccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHH
Q 010630 106 CGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLF 185 (505)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 185 (505)
-+.... +..+..++......+++++. ..+.......+++..+..+.-..+...+.-.+..+++-+ -+.....++
T Consensus 104 p~q~ll--G~~mllLs~~v~~~~g~ng~--~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lg--yaST~q~Vg 177 (510)
T KOG3574|consen 104 PCQYLL--GLFMLLLSYLVDRGLGGNGG--LPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLG--YASTCQSVG 177 (510)
T ss_pred ehHHHH--HHHHHHHhhCCCcccccCCC--CcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcC--chhHHHHHH
Confidence 444333 33333343333333332212 222233444455666777888888889988888888888 666666666
Q ss_pred HHHHHHHHhhccccccccccccccccccccccc--c---chhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCccc
Q 010630 186 MAVGNILGYATGSFSGWFKILPFTLTSACNVDC--A---NLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEE 260 (505)
Q Consensus 186 ~~~g~~ig~~l~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 260 (505)
.+.|..++..+--.+.. |..-+.+....+ . ....-.++.+.+..+...+..+.-+|++....++
T Consensus 178 ~~~GyfL~~~ifLaL~s----~dF~N~y~rs~P~~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke~~~~~~~e------- 246 (510)
T KOG3574|consen 178 QTAGYFLGNVVFLALES----PDFCNTYLRSIPLDQGFITLAGYLWFWGALFIVATTLVALLKKENDESVDEE------- 246 (510)
T ss_pred HhhhHHhhcceeeEecC----hhhhhHHHhcCcCccceEEhhHHHHHHHHHHHHHHHHHHHhcCCCchhhhhh-------
Confidence 66666666544211111 000000000000 0 1111223334444444444444444443321111
Q ss_pred CCCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHH
Q 010630 261 GHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLML 340 (505)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (505)
.+.+.+...+-+++.++- |..+.++......-+++.+-....+.-+. +.|+...-+++.
T Consensus 247 ----~~~~i~~~yk~l~~vLkl--k~v~~la~i~lt~K~gf~a~da~t~LkLl--------------e~Gv~ke~Lal~- 305 (510)
T KOG3574|consen 247 ----LELGIHESYKLLRDVLKL--KSVRWLAGILLTGKLGFQAADALTSLKLL--------------EHGVPKEELALI- 305 (510)
T ss_pred ----hhcCHHHHHHHHHHHHcC--ccHHHHHHHHHHHHHHhhhhhhccchHHH--------------HcCCChhHheee-
Confidence 111234445556666666 66666666666655555554433333221 112222222222
Q ss_pred HHHHHHHHHHHHHHHHHHh--cchHH--------HHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHH
Q 010630 341 NSVVLGITSVLMEKLCRKW--GAGFI--------WGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFT 410 (505)
Q Consensus 341 ~~~~~~i~~~~~g~l~~r~--g~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (505)
.+..+...+..+.+..|+ |+|++ +.+.... +...+......+.+.+ +..|. +.....+....
T Consensus 306 -~v~~~plqI~l~~~~gk~ta~~~pl~~~lka~~~R~~~~~--~~t~Lv~~~~~~~~~~----G~~~~-~~~il~i~~y~ 377 (510)
T KOG3574|consen 306 -AVPLVPLQIALPLYIGKWTAGPRPLNVFLKAVPYRLGGGL--VQTALVWWTPTLGHSD----GTFPR-GYYILLITSYA 377 (510)
T ss_pred -eeehhhHHHhhhhhheeecCCCCcchHHHHhhhHHHHHHH--HHHHHHhhhcccccCC----Cceee-chHHHHHHHHH
Confidence 122333334444444333 22222 2222221 2222222222111100 00111 11122222234
Q ss_pred HHhhHHHHHhhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhc
Q 010630 411 ILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFG 468 (505)
Q Consensus 411 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g 468 (505)
+.+...-..+....+..+++.|+ ...|+++.+.|...++|+-.-..+..++.|.++
T Consensus 378 ~~~~~~ts~fv~~maf~aqisdp--~iggTymTlLNTLsnLGg~wp~tv~l~l~D~lt 433 (510)
T KOG3574|consen 378 FHQVFVTSMFVSGMAFHAQISDP--AIGGTYMTLLNTLSNLGGNWPGTVALWLADGLT 433 (510)
T ss_pred HhhhHHHHHHHHHHHHHhhcCCc--ccCccHHHHHHHHHHhcCCcHHHHHHHhcccCc
Confidence 44544445555566778888888 999999999999999998887778888887653
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.02 E-value=8.4e-07 Score=84.70 Aligned_cols=335 Identities=12% Similarity=0.008 Sum_probs=182.2
Q ss_pred HHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHHhcccccccccCCCCCCcchhHHHHHHHHHHHHh
Q 010630 72 WLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDV 151 (505)
Q Consensus 72 ~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 151 (505)
.++-.....+...+.+.+.| +.|.|..+.+.+... ..-...+.+.++ +.+++...+.|+
T Consensus 56 ~aiiY~~ftv~~l~~psiv~----~i~~K~~lv~ga~~y-~~f~~gfl~~N~----------------y~~yfssallG~ 114 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVN----FLGPKWALVIGATCY-AAFPLGFLFPNS----------------YYLYFSSALLGF 114 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHH----HhhHHHHHHHHhHHH-HHHHHHHHhcch----------------HHHHHHHHHhhh
Confidence 55666777888888999999 999998887754443 333333323222 677888999999
Q ss_pred hhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhhccccccccccccccccccccccccchh--------H
Q 010630 152 ANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLK--------S 223 (505)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------~ 223 (505)
|.+..+.....+++|..+++++. +..++.-.....+.++|+.+-....... ...+....+.+ .
T Consensus 115 Gaallw~GqG~ylt~~st~~tie--~Nisi~Wai~~~~li~Ggi~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~ 185 (461)
T KOG3098|consen 115 GAALLWTGQGGYLTSNSTRETIE--RNISIFWAIGQSSLIIGGIILFIYFQFS-------SSSAIITDGTRRLVFEVLFI 185 (461)
T ss_pred hHHheecccceehhhcCChhhHH--HHHHHHHHHHHHHHHhhhHhheeeeEec-------ccccccccchhhhhcchhhh
Confidence 99999999999999999999988 8888888888888888765543311111 00000001111 0
Q ss_pred ---HHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCCCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHh
Q 010630 224 ---AFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLG 300 (505)
Q Consensus 224 ---~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (505)
...+.++++....+...-...++.+....+. +.. + ....+..+...+.+++ +++..+....+..+..
T Consensus 186 ~~~i~~~~~v~~~~~~l~~i~~~~~p~~~~~~~~-----~~~-~--~~~~~~l~~~~~l~~~--~~ml~L~~~f~~tG~~ 255 (461)
T KOG3098|consen 186 DFEIKVLFGVLLAISVLSIINFDFLPSKDVVNCK-----SSS-E--TSFSELLKLTFKLLKT--PKMLLLFPFFFYTGLE 255 (461)
T ss_pred hHHHHHHHHHHHHHHHHHhhheeecCccchhhhh-----hhc-c--ccHHHHHHHHHHHhcC--HhHHHHHHHHHHHHHH
Confidence 1111111111111111111111111111000 000 0 1234445666677776 6666665554444433
Q ss_pred hHhHHhhhHHHHHHH-HhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHH---hcchHHHHHHHHHHHHHH
Q 010630 301 WFPFLLFDTDWMGRE-IYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRK---WGAGFIWGISNILMALCF 376 (505)
Q Consensus 301 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~~r---~g~~~~~~~~~~~~~~~~ 376 (505)
........|..+.-. ..+.+. ...-.+..+..+++.++++...+.+.|| +|++..+.++..+..+..
T Consensus 256 ~Sf~~~iypt~i~ft~~~~~n~---------~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~ 326 (461)
T KOG3098|consen 256 TSFWISIYPTCISFTRKLGSNT---------TYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGF 326 (461)
T ss_pred HHHHHhccchhhhhhhhccCcc---------hhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHH
Confidence 323333333333211 011110 0111233333556666666666666655 477788877777766666
Q ss_pred HHHHHHHHHhhhccccCCC---CCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhcccccchhHHHHHHHHHHHHHH
Q 010630 377 LAMLILYYVAIHMDYRGHD---LPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQ 453 (505)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~ 453 (505)
++.........+ ..+.+ ...........+...+.|++-.......+.++.+..| +++..+.+++-+-..++.
T Consensus 327 ~li~l~~p~dap--~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~---~~~~~~fsi~kfyq~~~s 401 (461)
T KOG3098|consen 327 LLIHLSFPNDAP--LRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLYP---DDRAQAFSLFKFYQSVAS 401 (461)
T ss_pred HHHhccccccCC--CCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHhc---CchHHHHHHHHHHHHHHH
Confidence 655443211100 00000 0011234567788889999999999999999999996 556666666666655555
Q ss_pred HHHHhhh
Q 010630 454 IVVSMGS 460 (505)
Q Consensus 454 ~i~~~~~ 460 (505)
.++-...
T Consensus 402 ~v~~f~~ 408 (461)
T KOG3098|consen 402 CVAFFFS 408 (461)
T ss_pred HHHhhhh
Confidence 5544433
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.3e-08 Score=110.68 Aligned_cols=138 Identities=14% Similarity=0.003 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH--HHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhH
Q 010630 338 LMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILM--ALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGP 415 (505)
Q Consensus 338 ~~~~~~~~~i~~~~~g~l~~r~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 415 (505)
...+.+..++.+++.|+++||+|||+++.....+. .....+..+.. + +.+.+++..++.|++
T Consensus 58 ~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~-------------~---s~~~l~~~~~l~gi~ 121 (1140)
T PRK06814 58 GAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHL-------------N---SVPLLFAALFLMGIH 121 (1140)
T ss_pred HHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH-------------h---hHHHHHHHHHHHHHH
Confidence 33456777888999999999999999764322221 11111222221 0 467888889999999
Q ss_pred HHHHhhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHhccC
Q 010630 416 LAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPR 495 (505)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (505)
.+...+...+++.+.+|+ +++++++|+.++...+|..+||.++|++.+..+ ....|...+++.+++. +..+..++
T Consensus 122 ~a~~~p~~~a~l~~~~~~--~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~ 196 (1140)
T PRK06814 122 SALFGPIKYSILPDHLNK--DELLGANALVEAGTFIAILLGTIIGGLATISGN--FVILVALLMGIAVLGW-LASLFIPK 196 (1140)
T ss_pred HHhhchHHHHhhHhhcCc--cccchhhHHHHHHHHHHHHHHHHHHHHHHhccc--cHHHHHHHHHHHHHHH-HHHhhCCC
Confidence 999999999999999999 999999999999999999999999999999765 4455533333333333 33344443
Q ss_pred C
Q 010630 496 S 496 (505)
Q Consensus 496 ~ 496 (505)
.
T Consensus 197 ~ 197 (1140)
T PRK06814 197 T 197 (1140)
T ss_pred C
Confidence 3
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.4e-09 Score=95.71 Aligned_cols=106 Identities=20% Similarity=0.059 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHH
Q 010630 340 LNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAIT 419 (505)
Q Consensus 340 ~~~~~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 419 (505)
.+++..++.++.+|.++||+|||.++.+|.+..++...+.+... +...++..-.+.|+.-+..
T Consensus 76 sF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~-----------------~F~afv~aR~l~Gi~kgnl 138 (451)
T KOG2615|consen 76 SFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSR-----------------NFAAFVLARFLGGIFKGNL 138 (451)
T ss_pred HHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHhhhhccCch
Confidence 36778899999999999999999999999999988888777764 4433444467777766654
Q ss_pred hhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHh
Q 010630 420 YSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQ 465 (505)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~ 465 (505)
. +..++++|++++ ++|+.+++.++...++|-++||.++|++..
T Consensus 139 ~-v~rAiisdV~se--k~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 139 S-VIRAIISDVVSE--KYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred H-HHHHHHHhhcCh--hhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 4 677999999999 999999999999999999999999999988
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=5e-09 Score=102.97 Aligned_cols=137 Identities=20% Similarity=0.204 Sum_probs=89.4
Q ss_pred HHHHHHHHHhhhhHHHH-hCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHHh-cc
Q 010630 44 QFGWALQLSLLTPYVQE-LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIG-LS 121 (505)
Q Consensus 44 ~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~-~~ 121 (505)
...+.....+.|.|+++ +|.+..+.++......++..++.++.|+++| |+|||+.++....+.......... ..
T Consensus 251 ~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~D----r~g~r~~~~~~~~~~~~~~~~~~~~~~ 326 (434)
T PRK15075 251 TVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSD----RIGRRPVLIAFTVLAILTAYPALSWLV 326 (434)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566788988865 8999999998888888999999999999999 999998876643332222221111 11
Q ss_pred cccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHH-HHHHHHHHHHhhcccc
Q 010630 122 ADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFS-LFMAVGNILGYATGSF 199 (505)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~~~g~~ig~~l~~~ 199 (505)
.+. ..........+.+++.+...+....+..|.+|+++|+ .+.++.. ....++..++|.+.++
T Consensus 327 ~~~-------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg--~~~g~~~~~~~~~~g~~~p~~~g~ 390 (434)
T PRK15075 327 AAP-------------SFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRT--AGFSLAYSLATAIFGGFTPAISTW 390 (434)
T ss_pred cCC-------------chHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccc--hheeHHHHHHHHHHhhhHHHHHHH
Confidence 110 0122223333344555565666678899999999999 7777743 3333445667776665
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.00 E-value=6.4e-09 Score=98.08 Aligned_cols=188 Identities=13% Similarity=0.135 Sum_probs=138.0
Q ss_pred ccHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHH-HHHHHHHHHHHHHHHHHHHh-c
Q 010630 283 FSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLM-LNSVVLGITSVLMEKLCRKW-G 360 (505)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~g~l~~r~-g 360 (505)
.||.++.+....+.=-++++++-.-+..|+..+.-.+ .+++... ..++. .++...-...+++|+++||+ |
T Consensus 19 ~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~g-----Lg~~~~~---A~~l~~~y~slVY~t~i~GG~laDr~LG 90 (498)
T COG3104 19 QPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDG-----LGFDETH---ATGLFSAYGSLVYLTPIIGGWLADRVLG 90 (498)
T ss_pred CCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccc-----CCcChHh---hHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3577777777777766777776666666664332111 1122111 11111 12333345668999999997 9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhcccccchhH
Q 010630 361 AGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGL 440 (505)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~ 440 (505)
+|+.++.+.++.+++.+++.... ......+++...+.++|.|..-+...+++.|..|+++.+|-.
T Consensus 91 ~~~tI~lGail~~iGh~~L~~~~---------------~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~ 155 (498)
T COG3104 91 TRRTIVLGAILMAIGHLVLAISS---------------VSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDG 155 (498)
T ss_pred hhHHHHHHHHHHHHHHHHHhccc---------------cccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCC
Confidence 99999999999999998877651 002456777777888999999999999999999987767888
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHhccC
Q 010630 441 SLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPR 495 (505)
Q Consensus 441 ~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (505)
.++++.+..++|+.++|.+.+++.+..| +...|.++++-+.++.+..+..++.
T Consensus 156 gFt~fY~~iNiGsl~~p~i~~~~~~~~g--~~~gF~~aavGm~~gl~~f~~~~r~ 208 (498)
T COG3104 156 GFTLFYMGINIGSLIAPIITGLLAINYG--WHVGFGLAAVGMIIGLVIFLLGRRH 208 (498)
T ss_pred CccEEEEEeehHHHHHHHHHHHHHHhhC--HHHHHHHHHHHHHHHHHHHHHccch
Confidence 8888899999999999999999999987 7788999998888888776666543
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=98.99 E-value=7.8e-09 Score=102.69 Aligned_cols=137 Identities=14% Similarity=0.020 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHH
Q 010630 339 MLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAI 418 (505)
Q Consensus 339 ~~~~~~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 418 (505)
..+.+...++.++.|++.||+|+|+.+..+.++.+++.++..+.. .. +.+..++.-++.|++.+.
T Consensus 83 s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~-------------~~--~~~~l~~~r~~~G~~~~~ 147 (465)
T TIGR00894 83 SSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAA-------------GG--GIALVVFCRVIQGLAQGS 147 (465)
T ss_pred HHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHH-------------Hc--CchHHHHHHHHHHHhccc
Confidence 346677888999999999999999999988888777766654431 00 245567777888999999
Q ss_pred HhhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhh-cCCCchHHHHHHHHHHHHHHHHHHhcc
Q 010630 419 TYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLF-GGGNSPAFAVGGISALAGGLIAILAIP 494 (505)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (505)
..+....++.+.+|+ ++|++++|+.+....+|..+++.+.+.+.+.. | ....|++.++..++..++.+...+
T Consensus 148 ~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~g--w~~~f~i~~~~~~~~~~~~~~~~~ 220 (465)
T TIGR00894 148 VSPATHKIIVKWAPP--KERSRLLGMSTSGFQLGTFIFLPISGWLCESWGG--WPMIFYVFGIVGCAWSLLWFVFPA 220 (465)
T ss_pred chhhHHHHHHhcCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--CCeehhhhhHHHHHHHHHHHHHhc
Confidence 999999999999999 99999999999999999999999999998874 5 566777777666665555444443
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=4e-09 Score=101.84 Aligned_cols=139 Identities=15% Similarity=0.110 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHHh
Q 010630 40 AGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIG 119 (505)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~ 119 (505)
.+...........+.++|.++.|.+..+.|.+.++..+...+..++.|++.| |+|+|+.+.. +.+...+......
T Consensus 214 ~~l~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~----r~~~~~~l~~-~~~~~~~~~~~~~ 288 (382)
T PRK11128 214 VSLLQGSHAAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFR----RWSARDLLLL-SAICGVVRWGLMG 288 (382)
T ss_pred HHHHHHHhHhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHH----HCCHHHHHHH-HHHHHHHHHHHHH
Confidence 3333444444556778888889999999999999888888899999999999 9999988665 4455555555555
Q ss_pred cccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHH-HHHHHHHHHHhhccc
Q 010630 120 LSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFS-LFMAVGNILGYATGS 198 (505)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~~~g~~ig~~l~~ 198 (505)
..++. +..++..++.|++.+...+....++.+. ++++++ +..+..+ ...++|..+|+.++|
T Consensus 289 ~~~~~---------------~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~g~~ig~~i~G 350 (382)
T PRK11128 289 STTAL---------------PWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVI--RLQALYSALAMGGSIAIMTVLSG 350 (382)
T ss_pred hhhhH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55443 5666777788888888888888888886 556667 7788775 556778888998888
Q ss_pred ccc
Q 010630 199 FSG 201 (505)
Q Consensus 199 ~~~ 201 (505)
.+.
T Consensus 351 ~l~ 353 (382)
T PRK11128 351 FLY 353 (382)
T ss_pred HHH
Confidence 743
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.5e-09 Score=105.25 Aligned_cols=180 Identities=11% Similarity=-0.021 Sum_probs=99.4
Q ss_pred HHHHHHHhhhhHHHHhCCCchhHHH------------HHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHH
Q 010630 46 GWALQLSLLTPYVQELGIPHAWASI------------IWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAV 113 (505)
Q Consensus 46 ~~~~~~~~~~~~~~~~g~s~~~~g~------------~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~ 113 (505)
.++....+.|.+.++.|.+....+. ...+..++..++.++.++++| |+|||+.++....+ ..+
T Consensus 303 ~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~d----r~gRR~~l~~~~~~-~~~ 377 (502)
T TIGR00887 303 AFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVD----IIGRKPIQLMGFFI-LTV 377 (502)
T ss_pred HHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhcchhHHHHHHHH-HHH
Confidence 3333444577888888886542211 122333445567788899999 99999887664433 333
Q ss_pred HHHHHhcccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHH
Q 010630 114 AVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILG 193 (505)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig 193 (505)
+..+.....+. .. .. ...........++.....+..+.+.+|.+|++.|+ ++.++.+....+|.+++
T Consensus 378 ~~~~l~~~~~~--------~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~--~~~g~~~~~~~~~~~~~ 444 (502)
T TIGR00887 378 LFFVLGFAYNH--------LS-TH--GFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRS--TAHGISAASGKAGAIIG 444 (502)
T ss_pred HHHHHHHHHHh--------cc-hh--HHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHH--HHHHHHHHHhhhHHHHH
Confidence 33222221100 00 00 11111111111112223455677889999999999 99999999999999999
Q ss_pred hhccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCC
Q 010630 194 YATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLG 249 (505)
Q Consensus 194 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~ 249 (505)
+.+.+.+.... -+ +. +.....++...|.+.+++.++..+. .+++||++.+
T Consensus 445 ~~~~~~l~~~~-~~---~~-~~~~~~~~~~~~~i~~~~~~~~~i~-~~~lpEt~~~ 494 (502)
T TIGR00887 445 QFGFLYLAQHG-DP---TK-GYPTGIWMGHVLEIFALFMFLGILF-TLLIPETKGK 494 (502)
T ss_pred HHHhhhhhccc-cc---cc-cccccccchHHHHHHHHHHHHHHHH-heEeccCCCC
Confidence 98866522110 00 00 0000014455677776666655444 4677887654
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.98 E-value=7.8e-08 Score=93.57 Aligned_cols=147 Identities=16% Similarity=0.063 Sum_probs=102.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHh-----cchH-HHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHH
Q 010630 332 RMGALGLMLNSVVLGITSVLMEKLCRKW-----GAGF-IWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAA 405 (505)
Q Consensus 332 ~~~~~~~~~~~~~~~i~~~~~g~l~~r~-----g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (505)
+...++++.....-.+..+++|+++||+ |||| .+..+.++.++++..+.+. +...+.+.+
T Consensus 32 ~~~~ig~~~~~~~~~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~--------------~~~~~~~~l 97 (402)
T PRK11902 32 DIQTIGFFSLVGQAYIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFC--------------PPHAALWPL 97 (402)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhc--------------CccchHHHH
Confidence 3334444432222357789999999999 7766 5677777777777766554 111134555
Q ss_pred HHHHHHHhhHHHHHhhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHH
Q 010630 406 LIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAG 485 (505)
Q Consensus 406 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 485 (505)
.+..++.++..+...+...+++.|..|+ ++|+++.++......+|..+++.+.+.+.+.. .+....|++.++..++.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~al~~~~~~~--~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~-~gw~~~f~i~a~~~l~~ 174 (402)
T PRK11902 98 AGLAVLVAFLSASQDIVFDAYSTDVLHP--EERGAGAAVKVLGYRLAMLVSGGLALWLADRV-LGWGNTYLLMAGLMLAG 174 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCh--hhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcc-cCHHHHHHHHHHHHHHH
Confidence 5555566777777778888999999998 88999999999999999999999999988853 12566777766666655
Q ss_pred HHHHHHhccCC
Q 010630 486 GLIAILAIPRS 496 (505)
Q Consensus 486 ~~~~~~~~~~~ 496 (505)
.+. ....||+
T Consensus 175 ~l~-~~~~~e~ 184 (402)
T PRK11902 175 ALT-TLWAPEP 184 (402)
T ss_pred HHH-HHhcCCC
Confidence 443 3344444
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.2e-08 Score=100.21 Aligned_cols=126 Identities=15% Similarity=0.170 Sum_probs=78.9
Q ss_pred HHHHHHHHHhhhhHH-HHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHHhccc
Q 010630 44 QFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSA 122 (505)
Q Consensus 44 ~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~ 122 (505)
...++....++|.++ +++|.+..+.+...++..+...+++++.|+++| |+|||+.++....+..+..........
T Consensus 256 ~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~D----r~grr~~~~~~~~~~~~~~~~~~~~~~ 331 (432)
T PRK10406 256 SLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSD----KIGRRTSMLCFGSLAALFTVPILSALQ 331 (432)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HcCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555667888887 568999999999888888888899999999999 999998776644432222221111111
Q ss_pred ccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHH
Q 010630 123 DIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMA 187 (505)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 187 (505)
+. .. . ...+....+..+..+...+...++.+|++|++.|+ .+.|+.....+
T Consensus 332 ~~---------~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~--t~~g~~~~~g~ 382 (432)
T PRK10406 332 NV---------SS-P--YAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRA--LGVGLSYAVAN 382 (432)
T ss_pred cC---------Cc-H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccc--hhhhHHHHHHH
Confidence 10 00 0 11111111122223333345678899999999999 77887655433
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.96 E-value=7e-09 Score=99.36 Aligned_cols=187 Identities=17% Similarity=0.225 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHhC-CCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHH
Q 010630 33 LLKVASVAGGIQFGWALQLSLLTPYVQELG-IPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISI 111 (505)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~ 111 (505)
.+......+..+........+.+.|+++.| .+....+.++++..+.-++.-...+++.. |+|.|+.+++ +.+..
T Consensus 209 ~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~----r~g~~~ll~~-a~~~~ 283 (400)
T PF03825_consen 209 FLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLK----RFGIKWLLLL-ALVAY 283 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHH----hcCHHHHHHH-HHHHH
Confidence 333334445555666777788899999999 78888898888888888888888888888 9999987777 55556
Q ss_pred HHHHHHHhcc-cccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHH-HHHHH
Q 010630 112 AVAVLLIGLS-ADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSL-FMAVG 189 (505)
Q Consensus 112 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-~~~~g 189 (505)
++=..+++.. ++. ........++..+.|+..+........++.+..|++.|+ ++.++.+. ..++|
T Consensus 284 ~vR~~l~a~~~~~~-----------~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~a--t~Q~l~~~~~~Glg 350 (400)
T PF03825_consen 284 AVRWLLYAYFSDPW-----------PFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRA--TAQGLYSALSFGLG 350 (400)
T ss_pred HHHHHHHHHhcCCc-----------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchH--HHHHHHHHHHhhHH
Confidence 6666555544 221 011122233445689999999999999999999999999 88998765 57899
Q ss_pred HHHHhhccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccC
Q 010630 190 NILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEV 246 (505)
Q Consensus 190 ~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~ 246 (505)
..+|..++|++.+.. +......|...+.+.+++.++..++.+++.||+
T Consensus 351 ~~iG~~igG~l~~~~---------g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~ 398 (400)
T PF03825_consen 351 GAIGSLIGGWLYDAF---------GARGMFDWSAVFLVFAVMALVILVLFVILFKPK 398 (400)
T ss_pred HHHHHHHHHHHHHHh---------cchhhhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 999999999843322 111112456667777766666666666666654
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.3e-08 Score=93.85 Aligned_cols=164 Identities=15% Similarity=0.142 Sum_probs=120.9
Q ss_pred HHHHHHHhhhhHH-HHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHHhccccc
Q 010630 46 GWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADI 124 (505)
Q Consensus 46 ~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~ 124 (505)
+..........|. .++|++..+..++.....+..++++.++|++.| |+|.|++++.+..+....++..+..-.+
T Consensus 267 Gv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~----rfg~k~vl~~~lvi~~~~~~~~~~~~~~- 341 (438)
T COG2270 267 GVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDE----RFGSKPVLMIGLVILSIAALYLIFLEGE- 341 (438)
T ss_pred hHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCCceeehHHHHHHHHHHHHHHHcccc-
Confidence 4444445555666 489999999999999999999999999999999 9999988877555555555554433222
Q ss_pred ccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhhccccccccc
Q 010630 125 GWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFK 204 (505)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l~~~~~~~~ 204 (505)
.-+.+...+.|.+.|..+....++.++++|+++.+ +.+|++++....+..+||.+.+......
T Consensus 342 ---------------~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~--~fFglyaltgra~S~~gp~lv~v~t~iT 404 (438)
T COG2270 342 ---------------LDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEG--RFFGLYALTGRAASFLGPFLVAVITQIT 404 (438)
T ss_pred ---------------HHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcccc--ceeehhhhhhhHHHHHHHHHHHHHHHHh
Confidence 22334445678889999999999999999999999 9999999999999999999877633211
Q ss_pred cccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccC
Q 010630 205 ILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEV 246 (505)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~ 246 (505)
++-|..+....++.. ..++.+..+|++
T Consensus 405 --------------g~~r~g~~~i~vll~-iGl~~L~~v~~~ 431 (438)
T COG2270 405 --------------GSSRAGVLSIIVLLL-IGLLLLLRVKVP 431 (438)
T ss_pred --------------cchhhHHHHHHHHHH-hhHhhEEeecCC
Confidence 255666665554443 344445556654
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=98.92 E-value=5.9e-06 Score=80.07 Aligned_cols=159 Identities=14% Similarity=0.086 Sum_probs=95.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhCC-----CchhHHHHHHHhhhhhhhc-ccccceeccccCCCCCCcchh
Q 010630 30 LRKLLKVASVAGGIQFGWALQLSLLTPYVQELGI-----PHAWASIIWLCGPVSGLFV-QPLVGHFSDRCTSRFGRRRPF 103 (505)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----s~~~~g~~~~~~~l~~~i~-~~~~G~l~D~~~~r~Grr~~~ 103 (505)
.++++......++..+.++ .+-+.-+.+.+ +...+.++-+...+..++. .++.+++++ |++|++.+
T Consensus 6 ~~k~~~~~l~fF~il~~Y~----iLR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~----~~~~~~lf 77 (472)
T TIGR00769 6 LKKFLPLFLMFFCILFNYT----ILRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSN----ILSKEALF 77 (472)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh----cCCHHHhH
Confidence 3455555555555544444 33344555555 3357788877776766665 889999999 99999877
Q ss_pred HHHHHHHHHHHHHHHhcc--cccccccCCC-----CCCcc---------hhHHHHHHHHHHHHhhhhcccc-hhhhHhhh
Q 010630 104 IVCGAISIAVAVLLIGLS--ADIGWLLGDR-----GDFRP---------RAIAVFVFGFWILDVANNMTQG-PCRALLAD 166 (505)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-----~~~~~---------~~~~~~~~~~~l~g~~~~~~~~-~~~~~~~~ 166 (505)
-... ......+.++++. |+....+.+. ..... ...|...+......+....... ..+++.+|
T Consensus 78 ~~~~-~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fand 156 (472)
T TIGR00769 78 YTVI-SPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQ 156 (472)
T ss_pred HHHH-HHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6533 2233333332221 1111100000 00000 0123333333344455555555 67999999
Q ss_pred cccccccchhhHhHHHHHHHHHHHHHHhhcccc
Q 010630 167 LTGKDHRRTRVANAYFSLFMAVGNILGYATGSF 199 (505)
Q Consensus 167 ~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l~~~ 199 (505)
.++.++-. |..++.+.+.++|.++++.+..+
T Consensus 157 i~t~~qak--Rfy~l~~~ganlg~i~sg~~~~~ 187 (472)
T TIGR00769 157 ITTIDEAK--RFYALFGLGANVALIFSGRTIKY 187 (472)
T ss_pred cCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888 99999999999999999988665
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.8e-08 Score=96.54 Aligned_cols=191 Identities=16% Similarity=0.166 Sum_probs=126.8
Q ss_pred CCCChhH------HHHHHHHHHHHHHHHHHHHHhhhhHHH-HhCCCchhHHHHHHHhhhhhhhcccccceeccccCCC-C
Q 010630 26 AKVPLRK------LLKVASVAGGIQFGWALQLSLLTPYVQ-ELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSR-F 97 (505)
Q Consensus 26 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r-~ 97 (505)
++.|+++ +|......++...++.....++|.|++ .+|++..+.|++.+++.+...+...+.|.++||.+.| .
T Consensus 247 ~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~l 326 (466)
T KOG2532|consen 247 PPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRIL 326 (466)
T ss_pred CCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 3556665 445666777777888889999999985 5999999999999999999999999999999975543 1
Q ss_pred ---CCcchhHHHHHHHHHHHHHHHhcccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccc
Q 010630 98 ---GRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRR 174 (505)
Q Consensus 98 ---Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~ 174 (505)
-+||.+-..+.....+.++.+.+.++. ........+.+...+ .|...+....-..|..| ++-+
T Consensus 327 s~t~~rkifn~i~~~~~ai~l~~l~~~~~~---------~~~~a~~~l~~~~~~----~g~~~~Gf~~~~~~~ap-q~a~ 392 (466)
T KOG2532|consen 327 SETTVRKIFNTIAFGGPAVFLLVLAFTSDE---------HRLLAVILLTIAIGL----SGFNISGFYKNHQDIAP-QHAG 392 (466)
T ss_pred chHhHHHHHHhHHHHHHHHHHHeeeecCCC---------cchHHHHHHHHHHHH----cccchhhhHhhhhhccc-hHHH
Confidence 134455454555555555555444431 111112222222222 22223333333344443 5566
Q ss_pred hhhHhHHHHHHHHHHHHHHhhccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccc
Q 010630 175 TRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAH 244 (505)
Q Consensus 175 ~~~~~~~~~~~~~~g~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 244 (505)
..+++.+....+...++|.+.+.+.... ....|+..|++.+++.++..++..++-.
T Consensus 393 --~l~g~~~~~~~~~~~~~P~~vg~~~~~~------------t~~eW~~VF~i~a~i~~~~~i~f~~f~s 448 (466)
T KOG2532|consen 393 --FVMGIINFVGALAGFIAPLLVGIIVTDN------------TREEWRIVFLIAAGILIVGNIIFLFFGS 448 (466)
T ss_pred --HHHHHHHHHHHHHHHHHHHheeeEeCCC------------CHHHHHHHHHHHHHHHHHhchheeEeec
Confidence 8999999999999999999988732110 1248999999999888888766655543
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.3e-08 Score=100.15 Aligned_cols=173 Identities=16% Similarity=0.218 Sum_probs=132.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCC-cchhHHHHHHHH
Q 010630 33 LLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGR-RRPFIVCGAISI 111 (505)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Gr-r~~~~~~~~~~~ 111 (505)
.+.++.......+++.....++|.+.++.|.+..+...+.++..+...++.++.|+++| +... |+.+...+.+..
T Consensus 300 fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD----~~~~~~~~~~~~~ll~~ 375 (509)
T KOG2504|consen 300 FLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLAD----KPGIRALVLFLLTLLIA 375 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcC----ccccchHHHHHHHHHHH
Confidence 44445555556677888888999999999999999999999999999999999999999 6653 333333455555
Q ss_pred HHHHHHHhcccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHH
Q 010630 112 AVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNI 191 (505)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 191 (505)
.++.+.+.+..++ +.++....+.|+..+.......-.+.|+.+.++-. .+.|+.....+++.+
T Consensus 376 gl~~~~~p~~~~~---------------~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~--~a~Gl~l~~~gi~~l 438 (509)
T KOG2504|consen 376 GLARLFLPFATTY---------------VGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLS--NAYGLLLLFQGIGAL 438 (509)
T ss_pred HHHHHHHHHhccH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcc--hHHHHHHHHhHHHHH
Confidence 5555555565554 66666677778888887777777899999999988 899999999999999
Q ss_pred HHhhccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhh
Q 010630 192 LGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISA 240 (505)
Q Consensus 192 ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 240 (505)
+|+.+.+.+.... ++|...|+..++..++...+.+
T Consensus 439 ~gpPiag~~~d~t--------------g~Y~~~f~~~g~~~~~s~~~~~ 473 (509)
T KOG2504|consen 439 VGPPIAGLLYDIT--------------GNYDHAFYFCGLCFLLSAVLLL 473 (509)
T ss_pred cCcccceeeeecc--------------CCeeeehhhcChHHHHHHHHHH
Confidence 9999988733222 2578888888876666654443
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.91 E-value=7e-08 Score=92.29 Aligned_cols=132 Identities=11% Similarity=-0.023 Sum_probs=96.1
Q ss_pred HHHHHHHHHHh-----cchHHH-HHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhc
Q 010630 349 SVLMEKLCRKW-----GAGFIW-GISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSV 422 (505)
Q Consensus 349 ~~~~g~l~~r~-----g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 422 (505)
.+++|++.||+ ||||.+ ..+.++.++......+. ++..+.+.+.....+.++..+...+.
T Consensus 38 ~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~--------------~~~~~l~~l~~~~~~~~~~~~~~~~~ 103 (356)
T TIGR00901 38 KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFL--------------VPSTDLPLLAGLAFLIAFFSATQDIA 103 (356)
T ss_pred HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcC--------------CcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999998 788875 45666666665555444 21123455555555666777777777
Q ss_pred hhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcC------CCchHHHHHHHHHHHHHHHHHHhccCC
Q 010630 423 PYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGG------GNSPAFAVGGISALAGGLIAILAIPRS 496 (505)
Q Consensus 423 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (505)
..+++.|.+|+ ++|+.+.|+......+|..+++.+++.+.+..|. .+...|++.+++.+++.+..++..||+
T Consensus 104 ~~a~~~~~~~~--~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~ 181 (356)
T TIGR00901 104 LDAWRLEILSD--EELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLFLAKEP 181 (356)
T ss_pred HHHHHHHhCCH--hhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 88999999998 9999999999999999999999999999887652 145567777777666665555445554
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.90 E-value=7.6e-08 Score=92.02 Aligned_cols=127 Identities=20% Similarity=0.187 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhH
Q 010630 336 LGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGP 415 (505)
Q Consensus 336 ~~~~~~~~~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 415 (505)
+......+...++.++.|++.||+|+|+.+..+.++..++.+.. .. + +.+.+++...+.|++
T Consensus 39 ~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~--------------~---~~~~l~~~~~~~g~g 100 (355)
T TIGR00896 39 LLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SA--------------P---GTALLFAGTALIGVG 100 (355)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-Hh--------------c---cHHHHHHHHHHHHHH
Confidence 33445677788899999999999999999998887776666554 32 1 345566777778888
Q ss_pred HHHHhhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHH
Q 010630 416 LAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISAL 483 (505)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~ 483 (505)
.+...+....++.|..| ++++++.|+.+....+|..+++.+.+.+.+..+......|...++..+
T Consensus 101 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~ 165 (355)
T TIGR00896 101 IAIINVLLPSLIKRDFP---QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPAL 165 (355)
T ss_pred HHHHhccchHHHHHhCc---chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 88777666677777764 678999999999999999999999999887654223444554444333
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.6e-07 Score=89.60 Aligned_cols=113 Identities=12% Similarity=-0.100 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhH
Q 010630 336 LGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGP 415 (505)
Q Consensus 336 ~~~~~~~~~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 415 (505)
+....+.+...+++++.|++.||+|||+.+..+..+.+++.+++.... . . + +.+.+++..++.|++
T Consensus 65 l~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~-~--a--------~---~~~~ll~~r~l~G~g 130 (438)
T PRK10133 65 LIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAA-E--I--------M---NYTLFLVGLFIIAAG 130 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH-h--c--------C---CHHHHHHHHHHHHHH
Confidence 334456788889999999999999999999999999998887653221 0 0 1 466777888899999
Q ss_pred HHHHhhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhH
Q 010630 416 LAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWD 464 (505)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~ 464 (505)
.+...+..+.++.+..|+ ++++..++..+....+|..+++.+++.+.
T Consensus 131 ~g~~~~~~~~~v~~~~~~--~~~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 131 LGCLETAANPFVTVLGPE--SSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred HHHHHhhHHHHHHHhCCh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998888888887655 56666788899999999999999887654
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.9e-08 Score=97.53 Aligned_cols=166 Identities=14% Similarity=0.105 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHHhhhhHHHHhCCCchhHHHHHHHhhh-hhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHHh
Q 010630 41 GGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPV-SGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIG 119 (505)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l-~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~ 119 (505)
+...........+.+++.+|.|.+++++|++..+... ...++..+.|++.| |+|+|+.+.....+..+.......
T Consensus 218 ~l~~~~~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~----r~g~~~~l~~~~~~~~~~~~~~~~ 293 (390)
T TIGR02718 218 LLSAMTAVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVR----RAGLWRTFILGVGLAGSLALLWFA 293 (390)
T ss_pred HHHHHHHHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555567788888899999999999887764 55567889999999 999998777643332122222211
Q ss_pred cccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccc-cccchhhHhHHHHHHHHHHHHHHhhccc
Q 010630 120 LSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGK-DHRRTRVANAYFSLFMAVGNILGYATGS 198 (505)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~~~g~~ig~~l~~ 198 (505)
..... .............+.+++.+...+...+...+..++ ++++ +.++..+...++|..+|+.+++
T Consensus 294 ~~~~~----------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~lg~~~g~~~~G 361 (390)
T TIGR02718 294 QAAFW----------LAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAG--TDVTAVQSTRDLGELIASSIAG 361 (390)
T ss_pred HHHcc----------cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 11100 000112223333344556666667777777777766 7788 8999999999999999999988
Q ss_pred cccccccccccccccccccccchhHHHHHHHHHHHHHHH
Q 010630 199 FSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTC 237 (505)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~ 237 (505)
.+.... +++..|.+.+++.++..+
T Consensus 362 ~l~~~~---------------G~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 362 YLTDRF---------------GYAGGFLSGTVLAVLAIL 385 (390)
T ss_pred HHHHHH---------------ccHHHHHHHHHHHHHHHH
Confidence 743322 777888877765555433
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.5e-08 Score=99.23 Aligned_cols=135 Identities=9% Similarity=-0.006 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhH
Q 010630 336 LGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGP 415 (505)
Q Consensus 336 ~~~~~~~~~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 415 (505)
+......++.+++.++.|+++||+|||+.+.++.++.+++.++..+.. +.+.+++...+.|++
T Consensus 131 ~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~-----------------~~~~~~~~r~l~G~~ 193 (505)
T TIGR00898 131 LTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSP-----------------NYTVFLVFRLLVGMG 193 (505)
T ss_pred HHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcc-----------------cHHHHHHHHHHHHhh
Confidence 444456778889999999999999999999999888888877776652 467778888899999
Q ss_pred HHHHhhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHhccC
Q 010630 416 LAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPR 495 (505)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (505)
.+...+...+++.|.+|+ ++|+...++.+....+|.++++.+++.+.+ +...+++.++..++..+.. ++.||
T Consensus 194 ~~~~~~~~~~~~~e~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-----wr~~~~~~~i~~~~~~~~~-~~~~e 265 (505)
T TIGR00898 194 IGGIWVQAVVLNTEFLPK--KQRAIVGTLIQVFFSLGLVLLPLVAYFIPD-----WRWLQLAVSLPTFLFFLLS-WFVPE 265 (505)
T ss_pred ccchHHHHHHHhheecCh--hhhHHHHHHHHHHHHHHHHHHHHHHHHhhH-----HHHHHHHHHHHHHHHHHHH-HhcCC
Confidence 999899999999999999 899999999988889999999988766654 3456666666665555444 44454
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.3e-07 Score=93.38 Aligned_cols=136 Identities=10% Similarity=0.060 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhH
Q 010630 336 LGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGP 415 (505)
Q Consensus 336 ~~~~~~~~~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 415 (505)
+......+...+..++.|+++|.+|||..++.+.++..++.+.....+ +...++....+.|++
T Consensus 82 w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~-----------------~~~~~iag~~l~Gvg 144 (599)
T PF06609_consen 82 WFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQ-----------------NMNTFIAGMVLYGVG 144 (599)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCC-----------------cHHHHHHHHHHHHHh
Confidence 333446677778889999999999999999999999999999887763 566777888888988
Q ss_pred HHHHhhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHhc
Q 010630 416 LAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAI 493 (505)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (505)
.+... .....++|..|. +.|+...++.....-....+++.++..+... .++++.|++..+...++++.++++.
T Consensus 145 aG~~~-~~~~~isEl~p~--k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~--~~WRw~~~~~~i~~~i~~vl~~~fY 217 (599)
T PF06609_consen 145 AGVQE-LAALAISELVPN--KWRGLGLAIASIPFIITTWISPLIAQLFAAH--SGWRWIFYIFIIWSGIALVLIFFFY 217 (599)
T ss_pred hHHHH-HHHHHHHHhccc--chhhhHhHHHHHHHHhhhcccHHHHHHhccC--CCcchHHHHHHHHHHHHHHHHHHHh
Confidence 77766 345568999998 8887777666554444444556665554443 3467777777777666665555443
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.83 E-value=7.1e-08 Score=87.10 Aligned_cols=178 Identities=11% Similarity=0.047 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHH
Q 010630 33 LLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIA 112 (505)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~ 112 (505)
.|.+...+-..++.++....++|.+..|.|+|+.+.|.+.+...+.....+.....+.+ |...+|++.+...+++.
T Consensus 210 aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~----R~~n~r~~~~~~~~~~l 285 (395)
T COG2807 210 AWQVTLFMGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLAR----RSKNQRPLVVLALLLML 285 (395)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHH----HhcccchHHHHHHHHHH
Confidence 45555554555678889999999999999999999999999999999999999999999 54444455555666677
Q ss_pred HHHHHHhcccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHH
Q 010630 113 VAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNIL 192 (505)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~i 192 (505)
++.+.+.+.|.. ....-.++.|++.+..++.....+.+..++.++.. +..++.+....+=..+
T Consensus 286 ~G~~G~~~~P~~----------------~~~lw~~llG~G~G~~F~laL~li~~rs~~a~~Aa-~LSgmaQg~GYllAa~ 348 (395)
T COG2807 286 VGLVGLLLAPGQ----------------LPILWALLLGLGQGGAFPLALTLILLRSSDAAIAA-ALSGMAQGVGYLLAAF 348 (395)
T ss_pred HHHHHHHHhhhh----------------HHHHHHHHHhCccchHHHHHHHHHHhhcCChHHHH-HHHHHhhhhhHHHHhh
Confidence 777666555542 11111467889999999999999999887766543 3555555555555566
Q ss_pred HhhccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhcccc
Q 010630 193 GYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHE 245 (505)
Q Consensus 193 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e 245 (505)
||.+.|++.+.. ++|+..+...+...++..+..+..-|+
T Consensus 349 GP~l~G~lhDa~--------------gsw~~~~~~l~~~~i~m~i~Gl~a~r~ 387 (395)
T COG2807 349 GPWLFGFLHDAT--------------GSWSAPLVLLALATLLMLIFGLRAGRN 387 (395)
T ss_pred hhhhHhHHHHhc--------------CChHHHHHHHHHHHHHHHHHHhhcchh
Confidence 777766644322 488888887776666666666554433
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.83 E-value=8.6e-08 Score=82.34 Aligned_cols=363 Identities=14% Similarity=0.151 Sum_probs=183.3
Q ss_pred HHHHHHHHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHHhccccc
Q 010630 45 FGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADI 124 (505)
Q Consensus 45 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~ 124 (505)
.+.....+|+-...+++|+...++|.+.....-..++...+.|.++| |-|||+..+..++. .+++++ .-.++.+
T Consensus 51 AgDWLQgPYvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaD----kqGRKracvtycit-YiLsCi-TKhSpqY 124 (454)
T KOG4332|consen 51 AGDWLQGPYVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLAD----KQGRKRACVTYCIT-YILSCI-TKHSPQY 124 (454)
T ss_pred hhhhhcCceeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHh----hhccccceeeehHH-HHHHHH-hhcCCce
Confidence 34455566665556889999999999888888788888899999999 99999977663332 333332 2233433
Q ss_pred ccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHh-hhcccccccchhhHhHHHH--------HHHHHHHHHHhh
Q 010630 125 GWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALL-ADLTGKDHRRTRVANAYFS--------LFMAVGNILGYA 195 (505)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~-~~~~~~~~r~~~~~~~~~~--------~~~~~g~~ig~~ 195 (505)
-.++++|.+.|+..+.......+|. +|.- ++|+ .-.-+.. .++.+-.+++++
T Consensus 125 ---------------kVLmVGR~LGGiaTsLLFSaFEsWliaEHn--ekr~--FeqqWls~TFskA~ffgNglvAiiaGl 185 (454)
T KOG4332|consen 125 ---------------KVLMVGRVLGGIATSLLFSAFESWLIAEHN--EKRG--FEQQWLSVTFSKAVFFGNGLVAIIAGL 185 (454)
T ss_pred ---------------EEEeehhhhhhHHHHHHHHHHHHHHHHHhh--hccC--ChHhhhhHHHHHHHHhhccHHHHHHHH
Confidence 5678999999999998888887764 5543 2233 1111111 122222233333
Q ss_pred cccc-ccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCCCCCcchHHHHHH
Q 010630 196 TGSF-SGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLW 274 (505)
Q Consensus 196 l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (505)
.+-. .++.. .|.-..|-..+++..+...+.+.-..|...++.++ ++...
T Consensus 186 fgn~lvd~~s--------------lGPVAPFdAAacfLaigmAvil~~W~ENygdps~~----------------kdllt 235 (454)
T KOG4332|consen 186 FGNLLVDTFS--------------LGPVAPFDAAACFLAIGMAVILSSWSENYGDPSEN----------------KDLLT 235 (454)
T ss_pred HHHHHHHHhc--------------cCCCCchHHHHHHHHHHHHHHHhhhhhccCChhhh----------------HHHHH
Confidence 3222 12211 13333455555555555444444445554433222 22222
Q ss_pred HHHHHHhcc--cHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHH
Q 010630 275 ELFGTFRYF--SGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLM 352 (505)
Q Consensus 275 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 352 (505)
+.+...+.. +++...+.....+.-...+.+ +|-+++..+. .+.+...+ +....+.++.++++-+.
T Consensus 236 qf~gaa~aiaSD~ki~LLG~iqsLFE~smytF-----------VFLWTPaLsp-n~e~iPhG-fiFatFMlASmLGSSla 302 (454)
T KOG4332|consen 236 QFKGAARAIASDEKIALLGAIQSLFEGSMYTF-----------VFLWTPALSP-NDEEIPHG-FIFATFMLASMLGSSLA 302 (454)
T ss_pred HhhHhHHHHhcchHHHHHHHHHHHHhhhhhee-----------eeeecccCCC-CcccCCch-hHHHHHHHHHHHhhHHH
Confidence 222211111 133333322222221111111 1222222210 01111222 21222345566776666
Q ss_pred HHHHHHhcch--HHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhh
Q 010630 353 EKLCRKWGAG--FIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIR 430 (505)
Q Consensus 353 g~l~~r~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 430 (505)
.++..|-..| ..+.+..++.++.+.+........ |+..++...++.++++-.+.|..+|...-+-.+.
T Consensus 303 ~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vs----------P~kes~~~s~i~F~~~E~cvGlfwPSimkmRsqy 372 (454)
T KOG4332|consen 303 SRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVS----------PSKESPSESLIGFCLFEACVGLFWPSIMKMRSQY 372 (454)
T ss_pred HHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccC----------CCcCCchHHHHHHHHHHHHHhhcchHHHHHHHhh
Confidence 6666554433 334455555555555444432111 3333455567777777778888888888888999
Q ss_pred hcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHH
Q 010630 431 TESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIA 489 (505)
Q Consensus 431 ~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 489 (505)
.|+ +.|.+.+-.+..--.+-.-++ +.-.=.+.........|-++.....++.+..
T Consensus 373 IPE--earstimNfFRvPLnifvClv--Lynlh~~~~p~~tr~mf~icS~~~~~a~i~~ 427 (454)
T KOG4332|consen 373 IPE--EARSTIMNFFRVPLNIFVCLV--LYNLHVDAFPTTTRNMFGICSAFLFVASILQ 427 (454)
T ss_pred CCH--HHHhhhhhheechhhHhhhhh--heecccccCccccchhhhhhHHHHHHHHHHH
Confidence 998 888776655433222111111 1110011111123355667766666665443
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=7.8e-07 Score=88.61 Aligned_cols=130 Identities=12% Similarity=0.039 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHh
Q 010630 347 ITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYAL 426 (505)
Q Consensus 347 i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 426 (505)
...++.|++.||+|+|+++.++.++..++.++.++.... ....+.+.+.+..++.|++.+...+.....
T Consensus 76 ~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~-----------~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~ 144 (591)
T PTZ00207 76 YFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQE-----------VIEGSVVRLSVYNGLMTLGCMLFDLGAVVT 144 (591)
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcc-----------cccCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455678999999999999999999999999888775200 001146777778888898888777777778
Q ss_pred HhhhhcccccchhHHHHHHHHHHHHHHHHHHh-hhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHhcc
Q 010630 427 VSIRTESLGLGQGLSLGVLNLAIVIPQIVVSM-GSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIP 494 (505)
Q Consensus 427 ~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~-~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (505)
+.+.+| ++||++.|+......+|.++.+. ..+++.+. ....|++.++..++..++...+.+
T Consensus 145 i~~~Fp---~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~----~~~~fl~l~vl~~vv~ll~~~~vr 206 (591)
T PTZ00207 145 VLSVFP---SNRGAVVAIMKTFTGLGSAILGSIQLAFFSDN----TSAYFFFLMSFALVVGILAIVFMR 206 (591)
T ss_pred HHHhCh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHHHhhee
Confidence 888886 67899999999999999986444 44444332 234555555555555545554443
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.3e-06 Score=79.88 Aligned_cols=381 Identities=13% Similarity=0.073 Sum_probs=182.3
Q ss_pred HHhhhhHHHH--hCCCchhHHHHHHHhhhhhhhcccccceecccc-CCCCCCcchhHHHHHHHHHHHHHHHhcccccccc
Q 010630 51 LSLLTPYVQE--LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRC-TSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWL 127 (505)
Q Consensus 51 ~~~~~~~~~~--~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~-~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (505)
...+|.++++ -+.|-++.+....+.. . .-.-++|..+.|-. ..|+||||.+++-.-.+..+.++... .+..+.
T Consensus 20 ~gsiPflL~~~~~~~sy~q~~~fSla~~-P-fSlKlLWaPiVDs~y~~~~GRRKSWiiP~Q~l~g~~m~~l~--~~i~~~ 95 (544)
T PF13000_consen 20 FGSIPFLLQSMAKKVSYSQQAIFSLASY-P-FSLKLLWAPIVDSVYSKRIGRRKSWIIPIQYLSGILMLYLS--YNISQW 95 (544)
T ss_pred cccchhhhccccCCCChhHheeeeeeec-h-hHHHHhhhhhhhhhcccccCCcchhhhHHHHHHHHHHHHHH--hccchh
Confidence 3466777777 6888888776433211 0 01233455555653 24899999999855544444333332 222100
Q ss_pred ---------cCCCCCC--cchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhhc
Q 010630 128 ---------LGDRGDF--RPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYAT 196 (505)
Q Consensus 128 ---------~~~~~~~--~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l 196 (505)
+..++.. .......+...+++.-+..+.-..+...+.-.+..+++++ .+..-..++.++|..++..+
T Consensus 96 ~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~--~ASTcqtvG~~~Gyfls~tv 173 (544)
T PF13000_consen 96 LLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVG--YASTCQTVGQTAGYFLSFTV 173 (544)
T ss_pred hcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcc--hHHHHHHhHhhhhHHHHHHH
Confidence 0000011 1112223333343444556667778888888888888888 66666666666666665543
Q ss_pred cccccccccccccccccccccc-----cchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCC-------Ccc----c
Q 010630 197 GSFSGWFKILPFTLTSACNVDC-----ANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAP-------FSE----E 260 (505)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~-------~~~----~ 260 (505)
--.+.... ..+.+....+ -....-..+.+.+.++..+...++.+|.+..+..++.+ +++ +
T Consensus 174 Flalns~~----f~Nky~r~~p~~~glvtl~~yl~fwg~~~l~~T~~v~~~k~E~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (544)
T PF13000_consen 174 FLALNSPD----FCNKYLRSTPSDEGLVTLSGYLKFWGWVFLIVTILVAFFKKEKPHSESLPKIEPINKSDGKSKEISIE 249 (544)
T ss_pred HHhhCCHH----HHHHhcccCCCCCCeeeHHHHHHHHHHHHHHHHHHHheEeecccccccCcccccccccccccccccee
Confidence 21111100 0000000000 01112223344455555666667777765432211000 000 0
Q ss_pred CCCCC------cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhh
Q 010630 261 GHEQS------SDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMG 334 (505)
Q Consensus 261 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (505)
.+++. ....++..+.+++.+|. |+.+.+++..+..-+++.+...-...=+ .+.|+...
T Consensus 250 ~~~~~~~~~~~~~~i~~~Y~~l~~ilkL--p~V~~li~ilL~~KigF~a~da~T~LKL--------------lEkG~~KE 313 (544)
T PF13000_consen 250 YDESDVISTEEILSIKDVYKSLWKILKL--PNVQTLIIILLTAKIGFQANDAVTSLKL--------------LEKGLSKE 313 (544)
T ss_pred cccccccchhhhhhHHHHHHHHHHHHcC--chHHHHHHHHHHHHhccccchhhhHHHH--------------HHcCCCHH
Confidence 00100 11234455667777777 7777777776666666554433222211 12233332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh--cch-----------------------------HHHHHHHHHHHHHHHHHHHHH
Q 010630 335 ALGLMLNSVVLGITSVLMEKLCRKW--GAG-----------------------------FIWGISNILMALCFLAMLILY 383 (505)
Q Consensus 335 ~~~~~~~~~~~~i~~~~~g~l~~r~--g~~-----------------------------~~~~~~~~~~~~~~~~~~~~~ 383 (505)
-+++. .+..+...++.|+++.|+ |++ +.+..+...-.+..++.....
T Consensus 314 ~LAl~--~li~~P~qii~~~~~~Kws~g~~P~~~~~~~l~~~~~~~~~~~~l~g~~g~L~~Wl~af~gRL~~a~l~~~iV 391 (544)
T PF13000_consen 314 DLALL--VLIDFPFQIILPYYIGKWSAGSPPLDVDNKALPNFSRANKIIRLLVGDAGALRPWLWAFWGRLVAALLAQLIV 391 (544)
T ss_pred HhHHH--HHHhhhHHHHHHHHhhhhhcCCCccccccccccccccccchhhhhhccchhhHHHHHHHHHHHHHHHHHHheE
Confidence 23333 334455555666666555 222 111112211111111111100
Q ss_pred HHhhhccccCCCCCCChhH-HHHHHHHHHHhhHHHHHhhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhh
Q 010630 384 YVAIHMDYRGHDLPPNGIV-IAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGP 462 (505)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~ 462 (505)
...|.+-+.+... ..+++..++..+.....+....+.-+++.++ ..-|++|-+.|...++|+---..+.=+
T Consensus 392 ------~~fP~~g~v~~~Yf~lvI~~~~l~sf~stvmFVai~AFharISDP--~IGGTYMTLLNTvSNLGGtWP~~~vL~ 463 (544)
T PF13000_consen 392 ------YFFPSDGPVPTYYFLLVIIQHVLSSFMSTVMFVAIMAFHARISDP--AIGGTYMTLLNTVSNLGGTWPRTFVLW 463 (544)
T ss_pred ------EeCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCc--ccchHHHHHHHHHHhcCCCchHHHHHH
Confidence 0001000111111 2222233344455555566666777888888 999999999999999998776666666
Q ss_pred hHhhh
Q 010630 463 WDQLF 467 (505)
Q Consensus 463 l~~~~ 467 (505)
+.|.+
T Consensus 464 lVD~f 468 (544)
T PF13000_consen 464 LVDYF 468 (544)
T ss_pred Hhhhc
Confidence 66643
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=98.79 E-value=7.1e-09 Score=102.22 Aligned_cols=138 Identities=16% Similarity=0.192 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHhhhhHHHH-hCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHHh
Q 010630 41 GGIQFGWALQLSLLTPYVQE-LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIG 119 (505)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~ 119 (505)
+...........+.+.+.++ ++ +..+.+.+..+..+...++.+++|+++| |+|||+.+.. +....+++.+...
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~----r~g~~~~~~~-~~~~~~~~~~~~~ 305 (437)
T TIGR00792 232 LFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVK----KFGRKILFAG-GILLMVLGYLIFF 305 (437)
T ss_pred HHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCcHHHHHH-HHHHHHHHHHHHH
Confidence 33333444333344444433 44 5567777778888999999999999999 9999988776 4444455554443
Q ss_pred cccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhccc-------ccccchhhHhHHHHHHHHHHHHH
Q 010630 120 LSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTG-------KDHRRTRVANAYFSLFMAVGNIL 192 (505)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~~~g~~i 192 (505)
+.++ ..+...+...+.+++.+...+..+++++|..+ +++++ ..+++.+....+|..+
T Consensus 306 ~~~~--------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G--~~~~~~~~~~~~g~~l 369 (437)
T TIGR00792 306 FAGS--------------NLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEG--LVYSVRTFVRKLGQAL 369 (437)
T ss_pred Hcch--------------hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchH--HHHHHHHHHHHHHHHH
Confidence 3221 11444555667778888888888999998876 34456 8899999999999999
Q ss_pred Hhhccccc
Q 010630 193 GYATGSFS 200 (505)
Q Consensus 193 g~~l~~~~ 200 (505)
++.+.+.+
T Consensus 370 g~~i~g~l 377 (437)
T TIGR00792 370 AGFLVGLI 377 (437)
T ss_pred HHHHHHHH
Confidence 99988873
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=98.78 E-value=6.9e-08 Score=98.50 Aligned_cols=126 Identities=13% Similarity=0.102 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccC------------CCC-----------
Q 010630 340 LNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRG------------HDL----------- 396 (505)
Q Consensus 340 ~~~~~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~----------- 396 (505)
.+.++..+..++.+++.||.|||+.+.++.++.+++.+++.+.++....+++.. ..+
T Consensus 76 ~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~ 155 (633)
T TIGR00805 76 SYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRP 155 (633)
T ss_pred hhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccc
Confidence 356667788899999999999999999999999999998877654322111000 000
Q ss_pred ---C------C--ChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHh
Q 010630 397 ---P------P--NGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQ 465 (505)
Q Consensus 397 ---~------~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~ 465 (505)
+ . ......+++.-++.|++.+...+...+++.|.+|+ ++++.+.|+.+....+|..+|+.++|++.+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~--~~~~~~~~i~~~~~~iG~~lG~llgg~l~~ 233 (633)
T TIGR00805 156 TQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKS--KNSPLYIGILESIAVFGPAFGYLLGSFCLQ 233 (633)
T ss_pred cccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCc--cccHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 0 0 01234566788899999999999999999999999 999999999999999999999999999887
Q ss_pred hh
Q 010630 466 LF 467 (505)
Q Consensus 466 ~~ 467 (505)
..
T Consensus 234 ~~ 235 (633)
T TIGR00805 234 IY 235 (633)
T ss_pred cc
Confidence 54
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.77 E-value=3e-06 Score=86.03 Aligned_cols=165 Identities=10% Similarity=0.100 Sum_probs=111.6
Q ss_pred HHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHHhcccccccccCCCCCCcc
Q 010630 57 YVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRP 136 (505)
Q Consensus 57 ~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (505)
+.+.+|.+.+.+..+...+....-+...++|+++|+ ++||++.++++..+ ..++..+..+..... ....
T Consensus 14 l~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~---~lG~~~tIl~~~ii-~~lG~~llai~a~~~-------~~~~ 82 (654)
T TIGR00926 14 FLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADG---WLGKFKTILYLSIV-YVVGHALLSFGAIPS-------SGHP 82 (654)
T ss_pred HHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhHHHHHHHHHH-HHHHHHHHHhccCcc-------cccc
Confidence 346789999999888888888888899999999997 78999888875544 555555544432110 0111
Q ss_pred hhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccc-hhhHhHHHHHHHHHHHHHHhhcccccccccccccccccccc
Q 010630 137 RAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRR-TRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACN 215 (505)
Q Consensus 137 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~-~~~~~~~~~~~~~~g~~ig~~l~~~~~~~~~~~~~~~~~~~ 215 (505)
......+++..+..+|.+.+-+...+...|.++++++. ....+.+...+.++|.+++..+.+++.. ....
T Consensus 83 ~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~---------~~~~ 153 (654)
T TIGR00926 83 LHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRG---------DVGC 153 (654)
T ss_pred hHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hhcc
Confidence 12234556777788999999999999999999865432 1167777888888898888777655221 0000
Q ss_pred c-cccchhHHHHHHHHHHHHHHHHhhh
Q 010630 216 V-DCANLKSAFFLDVIFIAITTCISAS 241 (505)
Q Consensus 216 ~-~~~~~~~~f~~~~~~~~~~~~~~~~ 241 (505)
. ...+|...|.+.+++.++..++...
T Consensus 154 fg~~~~~~~aF~i~~i~m~ia~lvf~~ 180 (654)
T TIGR00926 154 FGCQDCYPLAFGVPAILMILALIVFMA 180 (654)
T ss_pred cccCcchHHHHHHHHHHHHHHHHHHHH
Confidence 0 0126888998888777766655443
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.3e-07 Score=85.68 Aligned_cols=177 Identities=14% Similarity=0.120 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHH--HHHHHHHHHHHHHHHHHHHhcch
Q 010630 285 GTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLM--LNSVVLGITSVLMEKLCRKWGAG 362 (505)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~g~l~~r~g~~ 362 (505)
++++.+....++.++.+.....|.+.|+++.. |++.+..+.+ ...+..++.+++.|.++||+|.|
T Consensus 7 ~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~-------------GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~k 73 (412)
T PF01306_consen 7 KNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVA-------------GLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLK 73 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHcccc-------------CCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhh
Confidence 78888888888888888899999999997543 3333344444 35677888889999999999976
Q ss_pred HHHHHHHHHH--HHHH-HHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhcccccchh
Q 010630 363 FIWGISNILM--ALCF-LAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQG 439 (505)
Q Consensus 363 ~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g 439 (505)
|-++...... ..+. ..+.+.+....+ .....++..+.+++.+....++.-+++.+.. ++.+
T Consensus 74 K~Ll~~i~~l~~l~~pff~~v~~pll~~n------------~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s----r~~~ 137 (412)
T PF01306_consen 74 KHLLWFIAILLLLFGPFFIYVFGPLLQSN------------FWLGAIIGGIYLGLVFNAGVPLSEAYAERVS----RRNG 137 (412)
T ss_dssp SHHHHHHHHHHHTCHHHHHHTHHHHHHTT-------------HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH----HHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHcccchHHHHHHHHHH----HHhc
Confidence 6544332222 1122 221222111111 1223333334445555555555555544432 4556
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHhc
Q 010630 440 LSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAI 493 (505)
Q Consensus 440 ~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (505)
.-+|-..+.+++|.++++.++|.+.+.. ....|+++....++..++....+
T Consensus 138 feYG~~R~wGSig~ai~s~~~G~L~~i~---p~~~fwi~s~~~~il~lll~~~~ 188 (412)
T PF01306_consen 138 FEYGRARMWGSIGFAIASLLAGILFNIN---PNIIFWIASAAAIILLLLLLLLK 188 (412)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHSS-
T ss_pred CCcchHHHHhhHHHHHHHHHhheeeeeC---ccHHHHHHHHHHHHHHHHHHHcC
Confidence 6677788899999999999999999864 34566665555444444444444
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.1e-07 Score=88.49 Aligned_cols=143 Identities=12% Similarity=0.005 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHH---hCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHH
Q 010630 33 LLKVASVAGGIQFGWALQLSLLTPYVQE---LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAI 109 (505)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~ 109 (505)
.+......+...........+.+.|+++ +|.++.+.+...+.+..+..++..+.++++| |+|+||.+.... .
T Consensus 142 ~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~----r~g~~~~l~~~~-~ 216 (310)
T TIGR01272 142 LVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMP----MISQGRYLAFNA-F 216 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCHHHHHHHHH-H
Confidence 3333333333333455556678888854 5999999999999999999999999999999 999888776543 3
Q ss_pred HHHHHHHHHhcccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHH
Q 010630 110 SIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVG 189 (505)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 189 (505)
..++..++....++ ........+.|++.+..+|...+...+..|++ .+ .+.++. ....+|
T Consensus 217 l~~~~~~l~~~~~~----------------~~~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~--~asai~-~~~~~G 276 (310)
T TIGR01272 217 LAVLLSIGAALTHG----------------YVAMWFVLALGLFNSIMFPTIFSLALNALGRH-TS--QGSGIL-CLAIVG 276 (310)
T ss_pred HHHHHHHHHHHcCC----------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hh--hhHHHH-HHHHhc
Confidence 34444333322221 11223455778999999999999998888754 34 455554 456688
Q ss_pred HHHHhhccccc
Q 010630 190 NILGYATGSFS 200 (505)
Q Consensus 190 ~~ig~~l~~~~ 200 (505)
..++|.+.|.+
T Consensus 277 g~i~P~l~G~l 287 (310)
T TIGR01272 277 GAIVPLLQGSL 287 (310)
T ss_pred chHHHHHHHHH
Confidence 88888876663
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.9e-07 Score=82.28 Aligned_cols=133 Identities=13% Similarity=0.088 Sum_probs=97.4
Q ss_pred HHHHHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHHhcccccccc
Q 010630 48 ALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWL 127 (505)
Q Consensus 48 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (505)
+.+..|-|.+.+++|+|.+|...+.....++..+ .++.|.+.| |+|.|..+++ +......++.....+-+-
T Consensus 19 Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d----~~gp~~~l~i-G~~~~~~GY~~~~l~~~~--- 89 (250)
T PF06813_consen 19 YTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYD----RFGPWVVLLI-GAVLGFVGYGLLWLAVSG--- 89 (250)
T ss_pred cchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHH----hcchHHHHHH-HHHHHHHHHHHHHHHHhC---
Confidence 3445567777889999999999999999999876 588899999 9999976666 555566666665543321
Q ss_pred cCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhhcc
Q 010630 128 LGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATG 197 (505)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l~ 197 (505)
.......|.+.+..++.+.+.+...........+.+| ++|| .+.|+.-...++++.+-..+.
T Consensus 90 -----~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG--~vvgilk~~~GLSaai~t~i~ 151 (250)
T PF06813_consen 90 -----RIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRG--TVVGILKGFFGLSAAIFTQIY 151 (250)
T ss_pred -----ccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccC--ceehhhhHHHHhHHHHHHHHH
Confidence 1122344666666666666666666666666678998 5799 999999999999888766553
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=98.71 E-value=8.9e-05 Score=69.85 Aligned_cols=63 Identities=11% Similarity=0.155 Sum_probs=50.9
Q ss_pred hHHHHHHHHHHHhhHHHHHhhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHh
Q 010630 401 IVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQ 465 (505)
Q Consensus 401 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~ 465 (505)
+.|.+++.++.-|+..|..+.-.+..+.+..|+ ++|..++|..+....+|..++..++-++-.
T Consensus 334 si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~--~~REFslg~vsvsds~GI~lAgll~l~le~ 396 (402)
T PF02487_consen 334 SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPP--EDREFSLGAVSVSDSLGILLAGLLGLPLEP 396 (402)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 467777788888998888888888888888887 899999999988888888887777655443
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.1e-07 Score=93.20 Aligned_cols=146 Identities=23% Similarity=0.237 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHH-hCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHH
Q 010630 33 LLKVASVAGGIQFGWALQLSLLTPYVQE-LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISI 111 (505)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~ 111 (505)
...+....+...++........+.|.++ +|.+ ...+.+..+..+...++.+++++++| |+|+|+.+..+..+ .
T Consensus 227 ~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~----r~gk~~~~~~~~~~-~ 300 (428)
T PF13347_consen 227 FRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSK----RFGKKKVYIIGLLL-A 300 (428)
T ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHH----HccceeehhhhHHH-H
Confidence 3334444444555666666666777655 5544 67788888899999999999999999 99999988875444 4
Q ss_pred HHHHHHHhccc--ccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhccccc-----ccchhhHhHHHHH
Q 010630 112 AVAVLLIGLSA--DIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKD-----HRRTRVANAYFSL 184 (505)
Q Consensus 112 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~-----~r~~~~~~~~~~~ 184 (505)
+.+.+...+.+ +. +..++...+.|++.+.......++++|..+.+ +|..|..++..+.
T Consensus 301 ~~~~~~~~~~~~~~~---------------~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~ 365 (428)
T PF13347_consen 301 ALGFLLLFFLGPGSP---------------WLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSF 365 (428)
T ss_pred HHHHHHHHHHHhhhH---------------HHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhh
Confidence 44444444443 33 67778888889999999999999999999843 2334488899999
Q ss_pred HHHHHHHHHhhcccc
Q 010630 185 FMAVGNILGYATGSF 199 (505)
Q Consensus 185 ~~~~g~~ig~~l~~~ 199 (505)
...++..+++.+.+.
T Consensus 366 ~~k~~~~la~~i~g~ 380 (428)
T PF13347_consen 366 FIKIGQGLAGAIVGL 380 (428)
T ss_pred hhHHHHHHHHHHHHH
Confidence 999999988887776
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.8e-06 Score=79.44 Aligned_cols=115 Identities=12% Similarity=-0.048 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhH
Q 010630 336 LGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGP 415 (505)
Q Consensus 336 ~~~~~~~~~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 415 (505)
........+..+.++..+++.||+|+|+-++++..+++++..++.-.. ...+...++....+.+.|
T Consensus 52 liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa--------------~~~~y~~FL~~lFila~G 117 (422)
T COG0738 52 LIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAA--------------SSKSYGFFLVALFILASG 117 (422)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhh--------------hhhhHHHHHHHHHHHHhh
Confidence 334445566778889999999999999999999999999999886442 111456677777888899
Q ss_pred HHHHhhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhh
Q 010630 416 LAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQL 466 (505)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~ 466 (505)
.+...+..+.++...-++ +....-+.+.+.++.+|.+++|.+++.+...
T Consensus 118 i~~LetaaNp~v~~lg~~--~~a~~rlnl~q~fn~lGa~~gp~~g~~lils 166 (422)
T COG0738 118 IGLLETAANPYVTLLGKP--ESAAFRLNLAQAFNGLGAILGPLLGSSLILS 166 (422)
T ss_pred hHHHHhccchHHHHhCCc--hhHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Confidence 999999999999999888 7777778899999999999999999998873
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=4.4e-07 Score=81.94 Aligned_cols=137 Identities=9% Similarity=0.005 Sum_probs=90.6
Q ss_pred HhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHHhcccccccccCCCCCCcchhHHHHHHHHHHHHhhh
Q 010630 74 CGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVAN 153 (505)
Q Consensus 74 ~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~ 153 (505)
+..+...-+.++.+++.| |+|||+.+.....++.+..+.+. .+.+. .....+++.+| ++.
T Consensus 389 itslaefPGlLIt~~ive----rlGRKkTMal~l~~f~iflfll~-~c~~r-----------n~~tvllf~ar----afi 448 (528)
T KOG0253|consen 389 ITSLAEFPGLLITGVIVE----RLGRKKTMALSLILFGIFLFLLT-TCKTR-----------NAYTVLLFTAR----AFI 448 (528)
T ss_pred HHHHhhCCchhHHHHHHH----HhcchhHHHHHHHHHHHHHHHHH-HhcCc-----------chhHHHHHHHH----HHH
Confidence 344556677888999999 99999999875444444333333 22221 11113334444 445
Q ss_pred hcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhhccccccccccccccccccccccccchhHHHHHHHHHHH
Q 010630 154 NMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIA 233 (505)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 233 (505)
++.+...+.|.+|.+|...|+ .+.|.-+....+|+++.|.++-.... .......+.+.+++
T Consensus 449 sg~fqvaYvYtPEVyPTavRa--tgvGtcSsmaRIggI~~p~iA~~~e~-----------------s~sl~i~vy~~~~i 509 (528)
T KOG0253|consen 449 SGAFQVAYVYTPEVYPTAVRA--TGVGTCSSMARIGGIFSPVIAMRAEL-----------------STSLPIFVYGALFI 509 (528)
T ss_pred hchheEEEEecCcccchhhhh--cchhhhhhHHhhhhhhhhHHHHHhcc-----------------ceeehHHHHHHHHH
Confidence 566777889999999999999 78888888999999999988722111 22233455666777
Q ss_pred HHHHHhhhccccCCCC
Q 010630 234 ITTCISASAAHEVPLG 249 (505)
Q Consensus 234 ~~~~~~~~~~~e~~~~ 249 (505)
+..+..+++.-|++.+
T Consensus 510 lagIavcffPiEtkGR 525 (528)
T KOG0253|consen 510 LAGIAVCFFPIETKGR 525 (528)
T ss_pred HHHHHheeeeeccCCC
Confidence 7777777776676543
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.3e-06 Score=87.82 Aligned_cols=140 Identities=14% Similarity=0.038 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhH
Q 010630 336 LGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGP 415 (505)
Q Consensus 336 ~~~~~~~~~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 415 (505)
+......+++.+++++.|+++|++|||+.+.++.+...++.++..+.. +...+++.-++.|++
T Consensus 93 ~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~-----------------~~~~l~~GR~l~G~g 155 (513)
T KOG0254|consen 93 LLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAP-----------------SWYQLIVGRILTGLG 155 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhh-----------------hHHHHHHHHHHhccc
Confidence 334446788889999999999999999999999999999999998884 678899999999999
Q ss_pred HHHHhhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHhccC
Q 010630 416 LAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPR 495 (505)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (505)
.|....+...+++|..|+ +.||...+..+....+|..++ .+.+...+....++...+.+..+.+++-.+. .++.||
T Consensus 156 ~G~~~~~~piy~sEiap~--~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pe 231 (513)
T KOG0254|consen 156 VGGASVLAPVYISEIAPA--HIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPE 231 (513)
T ss_pred hhhhhhcchhhHhhcCCh--hhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCC
Confidence 999999999999999999 999999999999988888888 4444444332011334455555555554444 555554
Q ss_pred C
Q 010630 496 S 496 (505)
Q Consensus 496 ~ 496 (505)
.
T Consensus 232 s 232 (513)
T KOG0254|consen 232 S 232 (513)
T ss_pred C
Confidence 3
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=8.2e-07 Score=89.60 Aligned_cols=137 Identities=18% Similarity=0.091 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhh
Q 010630 335 ALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGG 414 (505)
Q Consensus 335 ~~~~~~~~~~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 414 (505)
.+...++.++..+|+++.|.++||+|||+++.++.++..++-++..+.. +.+...+.-++.|+
T Consensus 121 ~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~-----------------~~~~~~~~Rfl~G~ 183 (521)
T KOG0255|consen 121 ALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAP-----------------NYWMFLIFRFLSGF 183 (521)
T ss_pred HHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhC-----------------cHHHHHHHHHHHHh
Confidence 3445556777889999999999999999999999999999888877773 57889999999999
Q ss_pred HHHHHhhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHhcc
Q 010630 415 PLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIP 494 (505)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (505)
+.+......+.+..|.+++ ++|+.+..+ ......++.+++...+++... +...+++..+...+..++ .++.+
T Consensus 184 ~~~~~~~~~~~~~~E~~~~--~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~~----Wr~~~~~~~~~~~~~~~~-~~l~~ 255 (521)
T KOG0255|consen 184 FGSGPLTVGFGLVAEIVSP--KQRGLALTL-GGFFFVGGLMLPAGAAYITRD----WRWLFWIISIPSGLFLLL-WFLPP 255 (521)
T ss_pred hccchhHHhHhhheeecCc--chhhHHHHH-HHHHHHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHHH-HHccC
Confidence 9999999999999999999 999999998 777788888888888888873 455666655555555443 33343
Q ss_pred CC
Q 010630 495 RS 496 (505)
Q Consensus 495 ~~ 496 (505)
|.
T Consensus 256 Es 257 (521)
T KOG0255|consen 256 ES 257 (521)
T ss_pred cC
Confidence 43
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=5.8e-08 Score=95.94 Aligned_cols=139 Identities=18% Similarity=0.189 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHhhhhHHH-HhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHHh
Q 010630 41 GGIQFGWALQLSLLTPYVQ-ELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIG 119 (505)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~ 119 (505)
+.............+.+.+ .+|.++...++......+...++.+++++++| |+|+|+.+..+ .++..++.+.+.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~----r~g~~~~~~~g-~~~~~i~~~~~~ 312 (448)
T PRK09848 238 LCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVA----RIGKKNTFLIG-ALLGTCGYLLFF 312 (448)
T ss_pred HHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCcHHHHHHH-HHHHHHHHHHHH
Confidence 3333344444445555554 46776655555444445667789999999999 99999888774 444455544443
Q ss_pred cccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccc-------cchhhHhHHHHHHHHHHHHH
Q 010630 120 LSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDH-------RRTRVANAYFSLFMAVGNIL 192 (505)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~-------r~~~~~~~~~~~~~~~g~~i 192 (505)
+.+. ...+...+...+.+++.+...+...++.+|..|.++ ++ ..++..+....+|..+
T Consensus 313 ~~~~-------------~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G--~~~~~~~~~~klg~ai 377 (448)
T PRK09848 313 WVSV-------------WSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEG--LTYSLFSFTRKCGQAI 377 (448)
T ss_pred HcCc-------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchh--HHHHHHHHHHHHHHHH
Confidence 3321 112445555667788888888888999999987543 35 8889999999999999
Q ss_pred Hhhcccc
Q 010630 193 GYATGSF 199 (505)
Q Consensus 193 g~~l~~~ 199 (505)
|+.+.+.
T Consensus 378 g~~i~g~ 384 (448)
T PRK09848 378 GGSIPAF 384 (448)
T ss_pred HHHHHHH
Confidence 9888776
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=8e-08 Score=95.44 Aligned_cols=148 Identities=10% Similarity=0.007 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHH
Q 010630 38 SVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLL 117 (505)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~ 117 (505)
...+...........+.+.+.+...-+....+.+.++..+...++.+++++++| |+|+|+.++.... ..+++.+.
T Consensus 238 ~~~~~~~~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~----r~gkk~~~~~~~~-~~~~~~~~ 312 (473)
T PRK10429 238 GMALAYNIASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVK----SLSRRILWAGASI-FPVLSCGV 312 (473)
T ss_pred HHHHHHHHHHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HcCcHHHHHHHHH-HHHHHHHH
Confidence 333434444445455555555544445666777777777888899999999999 9999998876443 33333322
Q ss_pred HhcccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccc-----cccchhhHhHHHHHHHHHHHHH
Q 010630 118 IGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGK-----DHRRTRVANAYFSLFMAVGNIL 192 (505)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-----~~r~~~~~~~~~~~~~~~g~~i 192 (505)
.....-. . ....+.+++...+.+++.+...+...++++|..+. .+|..|..++......-+|..+
T Consensus 313 ~~~~~~~--------~--~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al 382 (473)
T PRK10429 313 LLLMGLA--------A--PHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAF 382 (473)
T ss_pred HHHHhcc--------C--chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHH
Confidence 2111000 0 01124455556677888888888889999999663 3444446889999999999999
Q ss_pred Hhhccccc
Q 010630 193 GYATGSFS 200 (505)
Q Consensus 193 g~~l~~~~ 200 (505)
++.+.+++
T Consensus 383 ~~~i~g~~ 390 (473)
T PRK10429 383 AAFFIGVV 390 (473)
T ss_pred HHHHHHHH
Confidence 98888773
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.1e-07 Score=90.77 Aligned_cols=145 Identities=14% Similarity=-0.007 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHH-hCCCchhHHHHHHHhhhhhhhcccccceeccccCCC----CCCcchhHHH
Q 010630 32 KLLKVASVAGGIQFGWALQLSLLTPYVQE-LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSR----FGRRRPFIVC 106 (505)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r----~Grr~~~~~~ 106 (505)
+++..++..++.....+....++|.++++ .|.|..+...+.....++++++.++.|+++| | ..+|..++..
T Consensus 274 ~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsd----r~~~~~~~~~~~~~~ 349 (495)
T KOG2533|consen 274 GVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSD----RLKTIFARRLLFIVF 349 (495)
T ss_pred hHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHH----HHhhhHHHHHHHHHH
Confidence 35566666677766667778899999977 6699999999999999999999999999999 7 5566566555
Q ss_pred HHHHHHHHHHHHhcccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHH
Q 010630 107 GAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFM 186 (505)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 186 (505)
..+....+...+...... ............+.....+....+..+...++.|+.. ..+......
T Consensus 350 ~~~~~~~g~~~l~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~-~~~~~i~~~ 413 (495)
T KOG2533|consen 350 LCLYAIIGAISLLAAAVL---------------PGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALT-TVSAIIDGT 413 (495)
T ss_pred HHHHHHHHHHHHHhhccc---------------hHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHH-HHhhhhcch
Confidence 555555564444333221 1111222222233444556667888888877776643 334444444
Q ss_pred HHHHHHHhhc
Q 010630 187 AVGNILGYAT 196 (505)
Q Consensus 187 ~~g~~ig~~l 196 (505)
+.++++++.+
T Consensus 414 ~s~~~~~~~~ 423 (495)
T KOG2533|consen 414 GSAGAISGQL 423 (495)
T ss_pred hHHHHhhhhh
Confidence 5555544433
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=5.5e-07 Score=88.87 Aligned_cols=118 Identities=15% Similarity=0.208 Sum_probs=80.6
Q ss_pred chhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHHhcccccccccCCCCCCcchhHHHHHH
Q 010630 65 HAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVF 144 (505)
Q Consensus 65 ~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (505)
+...+.+.....+...++.+++++++| |+|+|+.+........+.........++ ..+.+++
T Consensus 263 ~~~~~~~~~~~~i~~ii~~~~~~~l~~----r~gk~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~ 324 (444)
T PRK09669 263 PDLATLFLVTGMIAGLFGALLSERLLG----KFDRVRAFKWTIVAFVILSALIFFIPPS--------------NVWLIFA 324 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HhChHHHHHHHHHHHHHHHHHHHHhCcc--------------hHHHHHH
Confidence 334455556666777888899999999 9999988876443333223322222111 1244556
Q ss_pred HHHHHHhhhhcccchhhhHhhhcccccc-----cchhhHhHHHHHHHHHHHHHHhhccccc
Q 010630 145 GFWILDVANNMTQGPCRALLADLTGKDH-----RRTRVANAYFSLFMAVGNILGYATGSFS 200 (505)
Q Consensus 145 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~-----r~~~~~~~~~~~~~~~g~~ig~~l~~~~ 200 (505)
...+.|++.+...+...++++|..+.++ |..|..++..+....+|..+|+.+++.+
T Consensus 325 ~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~l 385 (444)
T PRK09669 325 LNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWI 385 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677888888888889999999986322 2222677888888899999999888873
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.00016 Score=66.42 Aligned_cols=141 Identities=11% Similarity=0.048 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHH
Q 010630 340 LNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAIT 419 (505)
Q Consensus 340 ~~~~~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 419 (505)
.....+.+.+.+.|.+.||+|||+..+...++.+++.+..-.- +...+++.-++.|++....
T Consensus 77 ~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~~------------------~~~~L~~GRvlgGiaTSLL 138 (354)
T PF05631_consen 77 AGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHSS------------------NYPVLLLGRVLGGIATSLL 138 (354)
T ss_pred HHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhcc------------------ccHHHHHHHHHHHHHHHHH
Confidence 3556677888899999999999999888887777776532221 4667778888889988888
Q ss_pred hhchhHhH-hhhhccc--ccchhHHHHHHH-HHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHhccC
Q 010630 420 YSVPYALV-SIRTESL--GLGQGLSLGVLN-LAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPR 495 (505)
Q Consensus 420 ~~~~~~~~-~~~~~~~--~~~~g~~~g~~~-~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (505)
++..-+.. .|....+ ++..+..++... ..+.+..+++..++-++.+..+.+....|..+..+.+++.++.....+|
T Consensus 139 fS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~E 218 (354)
T PF05631_consen 139 FSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPE 218 (354)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccc
Confidence 86655544 3332110 133444454444 2333444555556556667666445677888888888887776666666
Q ss_pred CCC
Q 010630 496 SSA 498 (505)
Q Consensus 496 ~~~ 498 (505)
+..
T Consensus 219 Nyg 221 (354)
T PF05631_consen 219 NYG 221 (354)
T ss_pred cCC
Confidence 543
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=98.40 E-value=5e-07 Score=63.66 Aligned_cols=66 Identities=20% Similarity=0.350 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHH
Q 010630 40 AGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAI 109 (505)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~ 109 (505)
.+....+.+...++++.+.++.|+|+.++|.+.++..+...+++|++|.++| |++|+|..+....+
T Consensus 9 yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laD----k~~~~~~~l~~~~~ 74 (77)
T PF12832_consen 9 YFFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLAD----KFGKRKVILLGSLF 74 (77)
T ss_pred HHHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHCccHHHHHHHHH
Confidence 3444445677788999999999999999999999999999999999999999 99999887764443
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.00026 Score=69.19 Aligned_cols=164 Identities=15% Similarity=0.135 Sum_probs=87.1
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHhhhhH-HHHhCCCchhHHHHHHHhhh-hhhhcccccceeccccCCCCCCcchhH
Q 010630 27 KVPLRKLLKVASVAGGIQFGWALQLSLLTPY-VQELGIPHAWASIIWLCGPV-SGLFVQPLVGHFSDRCTSRFGRRRPFI 104 (505)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~l-~~~i~~~~~G~l~D~~~~r~Grr~~~~ 104 (505)
+..+++.+.++...++..+.+...-..=-.+ .... +++.+..+=....+ ...+...+..+++| |++|.+.+-
T Consensus 20 ~~E~~k~~~l~~m~f~i~f~y~~lR~~KD~lvvt~~--gae~I~flK~~~vlP~a~~f~~~y~kl~n----~~s~~~lFy 93 (491)
T PF03219_consen 20 RSELKKFLPLALMFFFILFNYTILRDLKDTLVVTAQ--GAEVIPFLKVWGVLPVAILFTILYSKLSN----RLSREKLFY 93 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCeEEEecC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCHHHHHH
Confidence 3445677777777666655554432111011 0112 34445554333333 23455667789999 999998776
Q ss_pred HHHHHHHHHHHHHHhc--ccccccccCCC----C-CCc---------chhHHHHHHHHHHHHhhhhcccc-hhhhHhhhc
Q 010630 105 VCGAISIAVAVLLIGL--SADIGWLLGDR----G-DFR---------PRAIAVFVFGFWILDVANNMTQG-PCRALLADL 167 (505)
Q Consensus 105 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~----~-~~~---------~~~~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~ 167 (505)
+.... ....+.++++ -|+-..++.+. . ... ....|...+..+..-+-.+.... ..+++..|.
T Consensus 94 ~~~~~-F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~i 172 (491)
T PF03219_consen 94 IIIIP-FLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEI 172 (491)
T ss_pred HHHHH-HHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 53322 2222222221 12211111110 0 000 01112222333333333344333 468999999
Q ss_pred ccccccchhhHhHHHHHHHHHHHHHHhhcccc
Q 010630 168 TGKDHRRTRVANAYFSLFMAVGNILGYATGSF 199 (505)
Q Consensus 168 ~~~~~r~~~~~~~~~~~~~~~g~~ig~~l~~~ 199 (505)
++.++-. |..++.+.+.++|.++++.+...
T Consensus 173 tt~~eAK--RfYpl~g~ganigli~sG~~~~~ 202 (491)
T PF03219_consen 173 TTVEEAK--RFYPLFGLGANIGLIFSGQLTSY 202 (491)
T ss_pred CCHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988888 99999999999999999887665
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.7e-05 Score=76.91 Aligned_cols=117 Identities=16% Similarity=0.125 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHHHHHHH----hcchHHHH-HHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhh
Q 010630 340 LNSVVLGITSVLMEKLCRK----WGAGFIWG-ISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGG 414 (505)
Q Consensus 340 ~~~~~~~i~~~~~g~l~~r----~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 414 (505)
+.-+.-.+.-++.|.++|| +||||.++ ++.+..++++.++.....+ +.........+..+++.+
T Consensus 53 ~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~-----------s~~~~~~y~~~~~~~~~~ 121 (460)
T PRK11462 53 VARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDL-----------SMNGKMIYAAITYTLLTL 121 (460)
T ss_pred HHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCC-----------CcchHHHHHHHHHHHHHH
Confidence 3455566777899999997 47777665 4666666666554433100 111123445566667788
Q ss_pred HHHHHhhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhc
Q 010630 415 PLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFG 468 (505)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g 468 (505)
++........++..|+.++ +++|.+..+.......+|..+++.+...+.+..|
T Consensus 122 ~~t~~~ipy~al~~~lt~d-~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g 174 (460)
T PRK11462 122 LYTVVNIPYCALGGVITND-PTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIG 174 (460)
T ss_pred HHHHHhccHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 8888887777888888775 3899999999999999998888888777776655
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=8.1e-07 Score=84.37 Aligned_cols=163 Identities=13% Similarity=0.097 Sum_probs=123.8
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHH
Q 010630 39 VAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLI 118 (505)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~ 118 (505)
....+.++.....+++-..+++++-.+...|........+-.+.-++.+++.. |+||-+++.+ ++....+=++.+
T Consensus 379 ~av~mG~g~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~----kiGHv~v~~l-gLa~~~~Rf~~~ 453 (618)
T KOG3762|consen 379 VAVVMGAGVGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIE----KIGHVNVMYL-GLACNVGRFLYY 453 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHH----Hhcccceeee-hhhHHHHHHHHH
Confidence 33444556666777777778999988888887777777777777888899999 9999988877 566666777777
Q ss_pred hcccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHH-HHHHHHHHHHhhcc
Q 010630 119 GLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFS-LFMAVGNILGYATG 197 (505)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~~~g~~ig~~l~ 197 (505)
...+|. |+.+-.-.++|+..+..+....+++++..|++.|+ .+.++.. ...++|--+|.++|
T Consensus 454 S~L~n~---------------W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~a--t~Q~l~~g~f~GlG~g~GslIG 516 (618)
T KOG3762|consen 454 SYLQNP---------------WMVLPIEILQGITHALIWAAIISYASHVAPPGLRA--TAQGLLQGIFHGLGKGLGSLIG 516 (618)
T ss_pred HHhcCc---------------hheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchH--HHHHHHHHHhcccCcchhhhhh
Confidence 677765 77777888999999999999999999999999999 7777754 45677777888887
Q ss_pred ccccccccccccccccccccccchhHHHHHHHHHHHHHHHH
Q 010630 198 SFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCI 238 (505)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 238 (505)
+...... +-+..|.+.++.+++..++
T Consensus 517 G~~v~~f---------------g~~ttf~~~giAcl~~l~~ 542 (618)
T KOG3762|consen 517 GFVVERF---------------GARTTFRIFGIACLVTLAL 542 (618)
T ss_pred hhhheee---------------hhHHHHHHHHHHHHHHHHH
Confidence 7743322 6677777777655554443
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.6e-05 Score=76.39 Aligned_cols=146 Identities=14% Similarity=0.012 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHH
Q 010630 338 LMLNSVVLGITSVLMEKLCRKWGA-GFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPL 416 (505)
Q Consensus 338 ~~~~~~~~~i~~~~~g~l~~r~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 416 (505)
.....++..+++++.++...|.+. |+.++.+.+++.++.+++....+...+ ..+.+++.-++.|++.
T Consensus 77 iaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~------------~~y~mL~~R~l~Gvg~ 144 (488)
T KOG2325|consen 77 IAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNG------------VKYLMLVARILTGVGV 144 (488)
T ss_pred HHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccc------------hHHHHHHHHHHcCcCc
Confidence 334678889999999999999886 788889999999999988555422221 5678888889999887
Q ss_pred HHHhhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhc-----------CCCchHHHHHHHHHHHH
Q 010630 417 AITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFG-----------GGNSPAFAVGGISALAG 485 (505)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g-----------~~~~~~~~~~~~~~~~~ 485 (505)
+... ..-+++++..-. ++|-++++..+....+|.++||.+...+..... +.+...-++.+++.++.
T Consensus 145 ~n~a-~lR~Y~a~~s~~--~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~ 221 (488)
T KOG2325|consen 145 GNFA-VLRAYIADASTV--EDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIY 221 (488)
T ss_pred ccHH-HHHHHHHhccCc--cchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHH
Confidence 7654 567888886666 777888887777778888888887655443210 01223345666667777
Q ss_pred HHHHHHhccCCCC
Q 010630 486 GLIAILAIPRSSA 498 (505)
Q Consensus 486 ~~~~~~~~~~~~~ 498 (505)
.++.....+|..+
T Consensus 222 ~v~i~~~f~E~~~ 234 (488)
T KOG2325|consen 222 IVIILFFFKEVYR 234 (488)
T ss_pred HHHHHhheeeccc
Confidence 7676666665443
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.29 E-value=1e-06 Score=87.00 Aligned_cols=129 Identities=17% Similarity=0.101 Sum_probs=94.7
Q ss_pred HHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHHh-cccccccccCCCCCCcch
Q 010630 59 QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIG-LSADIGWLLGDRGDFRPR 137 (505)
Q Consensus 59 ~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 137 (505)
+.+|.++.+.|.+.....++..++....+++.+ |++.|+.+.+...+ ...+..... ....... .....
T Consensus 281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~----~~~~r~~l~~~~~l-~~~~~~~~~~l~~~~~~------~~gi~ 349 (468)
T TIGR00788 281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLK----TFPYRLLFGVTTLL-YTLSSLFDLILVKRWNL------AFGIS 349 (468)
T ss_pred ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHh----hCCHHHHHHHHHHH-HHHHHhCceeeeecccc------ccCCC
Confidence 578999999999999999999999999999988 99999877764433 443332221 1111100 00000
Q ss_pred hHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhhccccc
Q 010630 138 AIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFS 200 (505)
Q Consensus 138 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l~~~~ 200 (505)
..+.......+.+++.+....+...++.+..|+++++ ...++.....++|..+++.+++.+
T Consensus 350 ~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~eg--t~~al~~s~~~lg~~v~~~~gg~l 410 (468)
T TIGR00788 350 DEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCES--SVFALLASILHLGSSVSGFLGVLL 410 (468)
T ss_pred CeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCcee--hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1123344455677888888899999999999999999 899999999999999999888874
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.21 E-value=9.3e-06 Score=75.93 Aligned_cols=194 Identities=12% Similarity=0.056 Sum_probs=115.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHhCCCchhHHH--------HHHHhh-hhhhhcccccceeccccCCCCCCcchh
Q 010630 33 LLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASI--------IWLCGP-VSGLFVQPLVGHFSDRCTSRFGRRRPF 103 (505)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~--------~~~~~~-l~~~i~~~~~G~l~D~~~~r~Grr~~~ 103 (505)
++..+..+|...+.++...-+...+.+..|+.+..... ...+.. .....+-.+...++| +.|||+..
T Consensus 306 Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id----~iGRk~iq 381 (538)
T KOG0252|consen 306 LLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFID----IIGRKYIQ 381 (538)
T ss_pred HHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEee----hhhhHHHH
Confidence 33444556666666666666677777877766543322 222222 223336677788999 99999877
Q ss_pred HHHHHHHHHHHHHHHhcccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHH
Q 010630 104 IVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFS 183 (505)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 183 (505)
+. +..++.+..+.++...+. . ...........+..++..+| -......+.+|.+|.+.|+ ...|+..
T Consensus 382 ~~-GF~~~~i~~~~~~~~y~~--~-----~~~~Gf~v~y~l~~ff~NFG---Pn~ttfivpaE~FParvR~--t~hGIsA 448 (538)
T KOG0252|consen 382 LM-GFFIMTIFFFVIAGPYNQ--L-----ENTIGFVVLYSLTFFFGNFG---PNATTFIVPAEIFPARVRS--TCHGISA 448 (538)
T ss_pred Hh-hHHHHHHHHHHHcCCccc--c-----cccCceeehHHHHHHHHhcC---CCceeEEeehhhchHHHhh--hhhhHHH
Confidence 77 555555555555554441 0 11111112222223222222 2334456778999999999 8899998
Q ss_pred HHHHHHHHHHhhccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCC
Q 010630 184 LFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQS 254 (505)
Q Consensus 184 ~~~~~g~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 254 (505)
...-+|+++|...-..+..+. .|. ..+.++.+++.+.++.+..+.. +++||++.+..++.
T Consensus 449 A~GK~GAivg~~~F~~~t~~~-yp~---------~~g~~~v~~i~~~~~~~gi~~T-~l~pEtk~~~leei 508 (538)
T KOG0252|consen 449 ASGKAGAIVGAFGFLYLTDHN-YPP---------NIGVRNVFIILAGCMLLGILFT-LLIPETKGKSLEEI 508 (538)
T ss_pred HhccchHHHHHHHhhHhhhcc-CCc---------cccchHHHHHHHHHHHHhHhee-EEeecccccCHHHh
Confidence 888899988876644432222 121 1378889999887666655554 55678877655443
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.9e-08 Score=99.67 Aligned_cols=172 Identities=12% Similarity=0.017 Sum_probs=98.8
Q ss_pred HHHHHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHHh--cccccc
Q 010630 48 ALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIG--LSADIG 125 (505)
Q Consensus 48 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~--~~~~~~ 125 (505)
.....+.+.+.++.+.+.. -.......+...++.++...+.| |+|||+.++.+... ..++...+. .....
T Consensus 270 ~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~----~~GRr~~~i~~~~~-~~~~~~~~~~~~~~~~- 341 (451)
T PF00083_consen 270 NFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLID----RFGRRKLLIIGLLL-MAICSLILGIIFFLGV- 341 (451)
T ss_pred ccccccccccccccccccc--ccccccccccccccccccccccc----cccccccccccccc-cccccccccccccccc-
Confidence 3444556666777887776 22223344556667777779999 99999888774444 333333332 10000
Q ss_pred cccCCCCCCcchhHHHHHHHHHHHHhhhh-cccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhhccccccccc
Q 010630 126 WLLGDRGDFRPRAIAVFVFGFWILDVANN-MTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFK 204 (505)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l~~~~~~~~ 204 (505)
+ ...... ...++...+.....+ ...+..+.+.+|.+|.+.|. ++.++......++..+++.+.....
T Consensus 342 ----~--~~~~~~-~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~--~~~~~~~~~~~i~~~i~~~~~~~~~--- 409 (451)
T PF00083_consen 342 ----S--SSSWWS-ILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRS--TGIGLSYAVGRIGGFIIPFLFPYLF--- 409 (451)
T ss_pred ----c--cccccc-cccceeeeeccccccccccccccccccccccccccc--ccccccccccccccccccccccccc---
Confidence 0 000001 111122222222333 23345568889999999999 8888877777777776665543321
Q ss_pred cccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCC
Q 010630 205 ILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSH 251 (505)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~ 251 (505)
+.. +-...+.+.+.++.+..++.++++||++.+..
T Consensus 410 ------~~~------~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l 444 (451)
T PF00083_consen 410 ------NNL------GGWGVFLIFAGVCLIAIIFVYFFLPETKGKTL 444 (451)
T ss_pred ------ccc------cccccchhhHHHHHHHHhheeEEEeeCCCCCH
Confidence 110 22334566666777777888899999987554
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.1e-05 Score=74.96 Aligned_cols=176 Identities=18% Similarity=0.196 Sum_probs=127.2
Q ss_pred HHHHHHHHHHHHhhhhHH-HHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHHh
Q 010630 41 GGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIG 119 (505)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~ 119 (505)
+...+++.++-..+-||- +.+|++..+...+......+..++-...|++..| |.++|+.-.. ++...+.++.+..
T Consensus 218 ~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~---~~~~~~~a~~-G~~~~~~~f~lii 293 (403)
T PF03209_consen 218 FLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSR---RLGKKRTAAL-GCLLGALAFALII 293 (403)
T ss_pred HHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCchHHHHH-HHHHHHHHHHHHH
Confidence 334466777778888886 7799999999999999999888888888988774 6666654444 5555555555544
Q ss_pred cccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhhcccc
Q 010630 120 LSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSF 199 (505)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l~~~ 199 (505)
++... ...+.+..+.++.|++.|.......+...|+.++++.+ ..+|..+....++..++..+++.
T Consensus 294 ~a~~~------------~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG--~~mG~WGaaQA~A~Glg~~~GG~ 359 (403)
T PF03209_consen 294 LAGPL------------GSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAG--LFMGAWGAAQAIARGLGTFLGGA 359 (403)
T ss_pred HHHhc------------ccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchh--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33222 11277888889999999999999999999999999988 99999999999988888888887
Q ss_pred cccccccccccccccc-ccccchhHHHHHHHHHHHHHHHHhh
Q 010630 200 SGWFKILPFTLTSACN-VDCANLKSAFFLDVIFIAITTCISA 240 (505)
Q Consensus 200 ~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~ 240 (505)
..+.. ....+ ....+|..+|.+-++..+++..+..
T Consensus 360 ~~D~~------~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll~ 395 (403)
T PF03209_consen 360 LRDLV------RALFGNSPALAYGVVFALEAVLLLAALVLLG 395 (403)
T ss_pred HHHHH------HHhccCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 22210 00111 1223788888888866666655543
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.6e-06 Score=81.44 Aligned_cols=146 Identities=19% Similarity=0.280 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHH-HHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHH
Q 010630 36 VASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVA 114 (505)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~ 114 (505)
++...+....+..........|. ..+|.++...............++.+++..+++ |+|+|+.+..+..+ .+++
T Consensus 241 ~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~----~~gkk~~~~~~~~~-~~i~ 315 (467)
T COG2211 241 LLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVK----KFGKKKLFLIGLLL-LAVG 315 (467)
T ss_pred HHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHH----HhchHHHHHHHHHH-HHHH
Confidence 33333333344555555555555 346777777777777777777777999999999 99999999885444 5555
Q ss_pred HHHHhcccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhccccc-----ccchhhHhHHHHHHHHHH
Q 010630 115 VLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKD-----HRRTRVANAYFSLFMAVG 189 (505)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~-----~r~~~~~~~~~~~~~~~g 189 (505)
.+...+.+. .+.++.++..++.+++.+...+..+++++|..+-+ +|..|...+......=+|
T Consensus 316 ~~~~~f~~~-------------~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g 382 (467)
T COG2211 316 YLLLYFTPA-------------GSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLG 382 (467)
T ss_pred HHHHHhhcC-------------cchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHH
Confidence 555544441 12366677778889999999999999999987642 344447788888888888
Q ss_pred HHHHhhcccc
Q 010630 190 NILGYATGSF 199 (505)
Q Consensus 190 ~~ig~~l~~~ 199 (505)
..++..+.++
T Consensus 383 ~ala~~~~g~ 392 (467)
T COG2211 383 LALAGFIPGW 392 (467)
T ss_pred HHHHHHHHHH
Confidence 8888877766
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.7e-05 Score=75.61 Aligned_cols=137 Identities=19% Similarity=0.237 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhh
Q 010630 342 SVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYS 421 (505)
Q Consensus 342 ~~~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 421 (505)
++..++.+.+.|.++||+|||..+........+..+...+. . ++.++...+.| +++....
T Consensus 72 ~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~------------------~-~~~~~~~~l~g-~~~~~~s 131 (463)
T KOG2816|consen 72 GLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQ------------------G-YWFFLLLGLSG-GFSAIFS 131 (463)
T ss_pred HHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHH------------------H-HHHhhhccccc-chhhhhh
Confidence 55677888999999999999999988877776666665554 2 22323222222 4556667
Q ss_pred chhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHhccCCCCCCC
Q 010630 422 VPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPRSSAQKP 501 (505)
Q Consensus 422 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (505)
..+++++|.... ++|...+|+.+.....+..++|.+++.+....| ....+.+..+..+++.+....+.||...+++
T Consensus 132 ~~~a~vadis~~--~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~--~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~ 207 (463)
T KOG2816|consen 132 VGFAYVADISSE--EERSSSIGLLSGTFGAGLVIGPALGGYLVKFLG--IALVFLIAAASGILSLLYMLLFLPESLQEKE 207 (463)
T ss_pred hhhhheeeccch--hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHHHhhccccccCccc
Confidence 788999999998 999999999999999999999999999999865 7778889888999998888888887755544
Q ss_pred C
Q 010630 502 R 502 (505)
Q Consensus 502 ~ 502 (505)
+
T Consensus 208 ~ 208 (463)
T KOG2816|consen 208 R 208 (463)
T ss_pred c
Confidence 3
|
|
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0003 Score=63.48 Aligned_cols=288 Identities=14% Similarity=0.112 Sum_probs=145.9
Q ss_pred cchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhhccccccccccccccccccccccccchhHHHHHHHHHHHHHH
Q 010630 157 QGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITT 236 (505)
Q Consensus 157 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 236 (505)
..+.++++-+..+++++. ++.+......-.|...|..++..+..... .++...=.+......+.
T Consensus 112 EIAYysYIYs~Vd~~~Yq--rvt~y~RaA~L~g~~~g~vlaQlLvs~~~-------------~sy~~LN~ISL~~~~ia- 175 (433)
T KOG3810|consen 112 EIAYYSYIYSKVDPEMYK--RVTGYCRAAFLVGKFVGSVLAQLLVSLET-------------LSYTTLNYISLAEVTIA- 175 (433)
T ss_pred HHhhhheeeeecCHHHHH--HHHHHhHHHHHHHhHHHhHHHHHHhhhcc-------------cchhhhchhhHHHHHHH-
Confidence 456678888888888888 88888888777777777777665211110 02222222222222233
Q ss_pred HHhhhccccCCCCCCCCCCCCc-----ccCCCC-Cc--chHHHH----HHHHHHHHhcccHHHHHHHHHHHHHHHhhHhH
Q 010630 237 CISASAAHEVPLGSHDQSAPFS-----EEGHEQ-SS--DVHEAF----LWELFGTFRYFSGTIWIILIVTALTWLGWFPF 304 (505)
Q Consensus 237 ~~~~~~~~e~~~~~~~~~~~~~-----~~~~~~-~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (505)
.....++|..++....++++++ .++... .+ +..+.. .+++....++ |++....+...+...++.-.
T Consensus 176 ~~~A~fLP~v~rSl~f~~~~~~~~v~~~e~~~~~~~~~~~l~~~~~~l~~~l~~~y~n--p~ll~WSlWwAl~scg~~QV 253 (433)
T KOG3810|consen 176 VLLALFLPRVKRSLYFHRLEDKISVGDLEEMNPQASYMSYLRGAFVLLWRDLQECYSN--PRLLKWSLWWALASCGYYQV 253 (433)
T ss_pred HHHHhhCCCCchhhhhhcccccceeccchhcCccchhhHHHHHHHHHHHHHHHHHhcC--chhhhhHHHHHHhhchhHHH
Confidence 3333445544422111111100 011110 00 001112 2233344444 55544444444444343333
Q ss_pred HhhhHHHHHHHHhCCC-CCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH--HHHHHHHHHHHHHHHH
Q 010630 305 LLFDTDWMGREIYGGE-PNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIW--GISNILMALCFLAMLI 381 (505)
Q Consensus 305 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~~r~g~~~~~--~~~~~~~~~~~~~~~~ 381 (505)
..|. |.+++.- ++....|+.+.+ .+..+.+.++.+..|.+.-++.|..-+ .++.+..+-..+++..
T Consensus 254 ~nY~-----Q~LW~~~~~~~~~vyNG~ve------Av~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~ 322 (433)
T KOG3810|consen 254 TNYT-----QILWKEVAPNPANVYNGAVE------AVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQ 322 (433)
T ss_pred HHHH-----HHHHHhhCCCchhhhcCHHH------HHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhc
Confidence 3332 3333322 333334443322 123444567777888877666665333 3343333333333332
Q ss_pred HHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhh
Q 010630 382 LYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSG 461 (505)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g 461 (505)
.+ +.|..+...+++...+....++...-+++.... +..|..+|+..+..-+-+.+-..
T Consensus 323 t~-----------------~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~nL~~--e~~gLvFGiNTFvAl~lQsilT~--- 380 (433)
T KOG3810|consen 323 TQ-----------------HIWVCYAGYVLFRVIYQLTITIATFQIARNLSS--ELFGLVFGINTFVALILQSILTL--- 380 (433)
T ss_pred cc-----------------ceehhhhhHHHHHhhHhhhhhHHHHHHHHhhhh--hhheeeeehHHHHHHHHHHhheE---
Confidence 21 578888888888888887777777777777777 88999999876665554544443
Q ss_pred hhHhhhcCC---------CchHHHHHHHHHHHHHHHHHHhccC
Q 010630 462 PWDQLFGGG---------NSPAFAVGGISALAGGLIAILAIPR 495 (505)
Q Consensus 462 ~l~~~~g~~---------~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (505)
...|..|-+ +..-|++.+++.+++........++
T Consensus 381 iVvd~~g~~L~ir~Q~~~Y~~Yf~v~~~i~~~~~~~~~~~~~~ 423 (433)
T KOG3810|consen 381 IVVDDRGLGLDIRTQFVVYSSYFIVLGVIFLIGFGIEYLMCRR 423 (433)
T ss_pred EEEcccccCCCcceeEEEEeehHHHHHHHHHHHHHHHHHHhhc
Confidence 344533211 1234777777777776554444333
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00067 Score=55.21 Aligned_cols=111 Identities=11% Similarity=0.043 Sum_probs=85.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHh
Q 010630 334 GALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILG 413 (505)
Q Consensus 334 ~~~~~~~~~~~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 413 (505)
+..++.+......+..++.+.+.+++|.|+.++++.+...+-....... +.+.++...++.|
T Consensus 39 G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~~------------------~~~~l~~~s~l~G 100 (156)
T PF05978_consen 39 GYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFYP------------------NSYTLYPASALLG 100 (156)
T ss_pred cHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh------------------hHHHHHHHHHHHh
Confidence 3455555555566777889999999999999999988877655544332 3677888899999
Q ss_pred hHHHHHhhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhH
Q 010630 414 GPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWD 464 (505)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~ 464 (505)
++.+..+...-.++.+...+ +.+++..|++-.....+.++|..+.-.+.
T Consensus 101 ~~~a~lW~aqg~ylt~~s~~--~~~~~~~~ifw~i~~~s~i~G~~~~~~~~ 149 (156)
T PF05978_consen 101 FGAALLWTAQGTYLTSYSTE--ETIGRNTGIFWAIFQSSLIFGNLFLFFIF 149 (156)
T ss_pred hhhHHhhHhhhHHHHHcCCH--HHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888888888777 88899999888888888887777654443
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00066 Score=60.06 Aligned_cols=105 Identities=11% Similarity=0.072 Sum_probs=75.8
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHh
Q 010630 349 SVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVS 428 (505)
Q Consensus 349 ~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 428 (505)
+++.|.+.||+|++.++.++.+...++..++........ +. ...|.+.+...+.+.+.....+.......
T Consensus 53 G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i---------~~-~~~~~~~~~~~l~~~s~~~~~ta~lvt~~ 122 (250)
T PF06813_consen 53 GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRI---------PS-LPVWLMCLFLFLGGNSSCWFNTASLVTCV 122 (250)
T ss_pred cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCcc---------Cc-cchHHHHHHHHHHcccHHHhhhHHHHHHH
Confidence 588899999999999999999999999988776631110 11 13455666666666655555555445555
Q ss_pred hhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhh
Q 010630 429 IRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQL 466 (505)
Q Consensus 429 ~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~ 466 (505)
+.+| ++||++.|+.-....+++.+-..+...+.+.
T Consensus 123 ~NFP---~~RG~vvgilk~~~GLSaai~t~i~~~~f~~ 157 (250)
T PF06813_consen 123 RNFP---RSRGTVVGILKGFFGLSAAIFTQIYSAFFGD 157 (250)
T ss_pred HhCc---cccCceehhhhHHHHhHHHHHHHHHHHHcCC
Confidence 6777 6799999999999999888877776666653
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00019 Score=66.73 Aligned_cols=156 Identities=18% Similarity=0.198 Sum_probs=106.5
Q ss_pred HHHHHHHHhhhhHHHHhCCCc--hhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHHhccc
Q 010630 45 FGWALQLSLLTPYVQELGIPH--AWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSA 122 (505)
Q Consensus 45 ~~~~~~~~~~~~~~~~~g~s~--~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~ 122 (505)
..........+.+..+.+.+. ...++..+...+...++.++.|.++| |+|||+.++.. ......+.+...+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~g~~~~~~~~-~~~~~~~~~~~~~~~ 90 (338)
T COG0477 16 LDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGD----RYGRRKVLIIG-LLLFLLGTLLLALAP 90 (338)
T ss_pred HhcchHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccc----cccchHHHHHH-HHHHHHHHHHHHhCc
Confidence 344444556666777777666 47889999999999999999999999 88999666553 332233333333332
Q ss_pred ccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccc-cccchhhHhHHHHH-HHHHHHHHHhhccccc
Q 010630 123 DIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGK-DHRRTRVANAYFSL-FMAVGNILGYATGSFS 200 (505)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~-~~~~g~~ig~~l~~~~ 200 (505)
+ ...+.+.+.+...|++.+...+...+++.|..|+ ++|+ ...+.... ...+|..+++.+++..
T Consensus 91 ~-------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (338)
T COG0477 91 N-------------VGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERG--LAVGLVTLGAGALGLALGPLLAGLL 155 (338)
T ss_pred c-------------chHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 1236677777778888888888999999999997 5677 77777777 5777888888666552
Q ss_pred cccccccccccccccccccchhHHHHHHHHHHH
Q 010630 201 GWFKILPFTLTSACNVDCANLKSAFFLDVIFIA 233 (505)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 233 (505)
... ...+|+..|........
T Consensus 156 ~~~-------------~~~~~~~~~~~~~~~~~ 175 (338)
T COG0477 156 LGA-------------LLWGWRAAFLLAALLGL 175 (338)
T ss_pred HHH-------------HhcchHHHHHHHHHHHH
Confidence 211 11278886666554443
|
|
| >KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.94 E-value=4.7e-06 Score=71.35 Aligned_cols=85 Identities=19% Similarity=0.363 Sum_probs=69.3
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccc-----cCCCCCCcc
Q 010630 27 KVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDR-----CTSRFGRRR 101 (505)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~-----~~~r~Grr~ 101 (505)
+..++..+..+...+.....-.....|+-.++++.|.++.....++.+..+..++..|+.|..+|. +.+|+|||+
T Consensus 13 Pigr~svf~yGvGHmlNDitAScWFTYlllfltqiglsp~~~AmlML~GQVtda~st~ftGi~~d~nll~~~idr~G~~~ 92 (412)
T KOG4830|consen 13 PIGRTSVFAYGVGHMLNDITASCWFTYLLLFLTQIGLSPSSRAMLMLIGQVTDAISTPFTGIFSDSNLLPACIDRIGRRM 92 (412)
T ss_pred cccceeeeeechhHHHhhHHHHHHHHHHHHHHHHhcCCcchhHHHHHhhHHHHHHhcccccccccccccHHHhhhhccee
Confidence 355666777788888888888888889999999999999999999999999999999999977765 236999998
Q ss_pred hhHHHHHHHH
Q 010630 102 PFIVCGAISI 111 (505)
Q Consensus 102 ~~~~~~~~~~ 111 (505)
.+-..+.++.
T Consensus 93 ~wh~~gt~lV 102 (412)
T KOG4830|consen 93 SWHLIGTVLV 102 (412)
T ss_pred eeeecccEEE
Confidence 8866555433
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00063 Score=63.98 Aligned_cols=118 Identities=10% Similarity=-0.063 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCC-ChhHH--HHHHHHHHH
Q 010630 336 LGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPP-NGIVI--AALIIFTIL 412 (505)
Q Consensus 336 ~~~~~~~~~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~ 412 (505)
+..+++.++.+...+.+-|+.||+|-|....++..+..++..+=.... . |. ....+ .......+.
T Consensus 83 wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss----~--------p~v~~~f~~~l~~~Gq~ia 150 (480)
T KOG2563|consen 83 WLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISS----L--------PFVPPLFRRPLTHTGQSIA 150 (480)
T ss_pred HHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhcc----C--------ccccccchhhhhHHhHHHH
Confidence 555567788888899999999999999999999999888877655442 0 21 01233 555666777
Q ss_pred hhHHHHHhhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhh
Q 010630 413 GGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLF 467 (505)
Q Consensus 413 g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~ 467 (505)
+.++......+.-+..-.+|+ ++|..+..+..+...+|.+++.++...+....
T Consensus 151 a~Aq~Fim~lPskiA~~WF~~--~qra~A~~~~v~~n~LGvavg~llppilV~~~ 203 (480)
T KOG2563|consen 151 AAAQPFILGLPSKIAAVWFPP--DQRAIATVLGVMGNPLGVAVGFLLPPILVPSS 203 (480)
T ss_pred HHhhhHhhccccHHHHhhCCc--chhhhhhhHHHhcchHHHHHHhhccceecCCC
Confidence 777777666766677777888 88888888888888888888888887777654
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.008 Score=60.38 Aligned_cols=384 Identities=14% Similarity=0.047 Sum_probs=195.1
Q ss_pred HHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHHhcccccccccC-
Q 010630 51 LSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLG- 129 (505)
Q Consensus 51 ~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 129 (505)
.+.+....++++.+...+.-....+.-.........++++|- .+||-+.+.+...+ ...+..+..+.........
T Consensus 58 ~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~---f~gry~tI~~~s~i-~~~G~~~lt~~a~~~~l~p~ 133 (571)
T KOG1237|consen 58 SNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADS---FLGRYFTINIGSLI-SLLGLFGLTLSAMIPALLPF 133 (571)
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHH---HhHHHHHHHHHHHH-HHHHHHHHHHHHHhhhcCCc
Confidence 445555568888888777777777777777788889999993 45787777664443 4444333322222211110
Q ss_pred -----CC----CCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhccccc---cc-chhhHhHHHHHHHHHHHHHHhhc
Q 010630 130 -----DR----GDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKD---HR-RTRVANAYFSLFMAVGNILGYAT 196 (505)
Q Consensus 130 -----~~----~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~---~r-~~~~~~~~~~~~~~~g~~ig~~l 196 (505)
.. +.........+..+..+..+|.+..-+...++-+|-+++. ++ .....+.+.....++|..++..+
T Consensus 134 ~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~ 213 (571)
T KOG1237|consen 134 MCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTV 213 (571)
T ss_pred cccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHH
Confidence 00 1112233445566666777899999999999999999832 21 11145677777888888887766
Q ss_pred cccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccc----cCCCCCC------------------CCC
Q 010630 197 GSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAH----EVPLGSH------------------DQS 254 (505)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~----e~~~~~~------------------~~~ 254 (505)
..+.... .+|.+.|.+..+...++.++.+...+ +++.... .+.
T Consensus 214 ~vyiq~~---------------~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~gsp~t~i~~Vlvaa~~k~~~~~~~ 278 (571)
T KOG1237|consen 214 LVYIQDN---------------VGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRGSPKTRIGQVLVAAAFKRKAVVSL 278 (571)
T ss_pred HHhhhhc---------------ccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCCCchhHHHHHHHHHHHHHhccCCC
Confidence 5443222 27888887777666555444432211 1111000 000
Q ss_pred C--C-----C--cc-c---------------CCCCCcc--------hHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhh
Q 010630 255 A--P-----F--SE-E---------------GHEQSSD--------VHEAFLWELFGTFRYFSGTIWIILIVTALTWLGW 301 (505)
Q Consensus 255 ~--~-----~--~~-~---------------~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (505)
+ + + .. + +.+.... -......+.+..+|. -+.|... ...+..+
T Consensus 279 ~~~~~~~~~~~~~~~~~t~~f~~l~kaa~~~~~~~~~~~~~~~w~lct~~~Vee~K~~lr~--~Pi~~~~---i~~~~~~ 353 (571)
T KOG1237|consen 279 DPEELYYDCTDSVAIEGTKPFRFLDKAALKTSDDLKDGLDANPWRLCTVTQVEEVKAVLRL--LPIWLTT---IIYSTVY 353 (571)
T ss_pred cchhccccccccccccCCcccchhhHhhccCCcccccccccCCccCCCceehhhhhhhhhh--hHHHHHH---HHHHHHH
Confidence 0 0 0 00 0 0000000 001112233334333 2222222 1222111
Q ss_pred HhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHH----HHHHHhcc-------hHHHHHHHH
Q 010630 302 FPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLME----KLCRKWGA-------GFIWGISNI 370 (505)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g----~l~~r~g~-------~~~~~~~~~ 370 (505)
. ...+.+..|. ..++......++ +..+++... ..+...+..++.. .+.+|+.. ..-+-+|.+
T Consensus 354 a---q~~t~~v~Q~-~~mdr~~~~~f~--ip~asl~~f-~~~~~~~~iplydr~~vP~~~~~t~~~~~~t~lqrig~G~~ 426 (571)
T KOG1237|consen 354 A---QMVTFFVLQA-TTMDRHLGSNFK--IPAASLQVF-ILLSILIFIPLYDRVIVPFARKLTGNPFGITPLQRIGIGLV 426 (571)
T ss_pred H---hhhhheehhh-hhcCCCCCCCeE--eCchhHHHH-HHHHHHhhhhhcceeehhhhhhhcCCCCCCChhheeeccch
Confidence 1 1122222221 122222211121 122223222 1111112222222 22333322 112335666
Q ss_pred HHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhcccccchhHHHHHHHHHHH
Q 010630 371 LMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIV 450 (505)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ 450 (505)
+..+++...+.......+.......-+.+-+.++.+.-.+++|++.........-..-+.+|+ +.|+.+.+++.+...
T Consensus 427 ~si~sm~~aa~vE~krl~~~~~~~~~~~~mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~--sMkS~~~al~l~t~a 504 (571)
T KOG1237|consen 427 LSILSMAVAGIVEAKRLKTAVSLLVETNPMSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPE--SMKSVATALWLLTVA 504 (571)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhccCCCCCeeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCH--HHHHHHHHHHHHHHH
Confidence 666666665555422222100000001233677788888999998888877767777778898 999999999999999
Q ss_pred HHHHHHHhhhhhhHhhh
Q 010630 451 IPQIVVSMGSGPWDQLF 467 (505)
Q Consensus 451 ~~~~i~~~~~g~l~~~~ 467 (505)
+|..+...+........
T Consensus 505 ~G~~lss~Lv~~v~~~t 521 (571)
T KOG1237|consen 505 VGNYLSSVLVSLVQFST 521 (571)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999887666554
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00095 Score=68.16 Aligned_cols=143 Identities=10% Similarity=-0.034 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhh
Q 010630 343 VVLGITSVLMEKLCRKW-GAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYS 421 (505)
Q Consensus 343 ~~~~i~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 421 (505)
...-+..+++++++|++ |+++.+.++.++..++.+++.+..... . .........++.+.+..+|.+..-+
T Consensus 34 ~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~-~--------~~~~~~~~~l~gLaLia~G~GgiKp 104 (654)
T TIGR00926 34 YLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPS-S--------GHPLHDLLDLLGLALIALGTGGIKP 104 (654)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcc-c--------ccchHHHHHHHHHHHHHhhcccccc
Confidence 33446667889999985 999999999988888887776542000 0 0011223355666777778888888
Q ss_pred chhHhHhhhhccc-ccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcC-----CCchHHHHHHHHHHHHHHHHHHhcc
Q 010630 422 VPYALVSIRTESL-GLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGG-----GNSPAFAVGGISALAGGLIAILAIP 494 (505)
Q Consensus 422 ~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (505)
...+...|.++++ ++++-..+.++..+.++|+.+++.+.+++.+..+. ++...|.+.+++++++.++.....+
T Consensus 105 ~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k 183 (654)
T TIGR00926 105 CVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGSK 183 (654)
T ss_pred CchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhcc
Confidence 8889999988753 23467788888889999999999999998765421 2445677777777777655444333
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.011 Score=57.61 Aligned_cols=57 Identities=7% Similarity=0.044 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHHhhHHHHHhhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhh
Q 010630 401 IVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMG 459 (505)
Q Consensus 401 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~ 459 (505)
+.+..++..+++|+..|...+....+..+.+++ +++..+-.+.+.+..+|-.+|+.+
T Consensus 371 ~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~--~e~e~aG~~~~~~l~~Gl~~Gs~l 427 (437)
T TIGR00939 371 GDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDP--HEREVAGALMVIFLLVGLALGAVL 427 (437)
T ss_pred ccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677778999999998888888888888776 777777777777777777777665
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00078 Score=65.84 Aligned_cols=133 Identities=18% Similarity=0.132 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHh---c-chH-HHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhc
Q 010630 348 TSVLMEKLCRKW---G-AGF-IWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSV 422 (505)
Q Consensus 348 ~~~~~g~l~~r~---g-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 422 (505)
..++.|.++|-+ | ||| -++++.++..++...+.... ....+.....+...+..++......+
T Consensus 40 ~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~-------------~~~~s~~~~~~~l~la~~g~a~~DV~ 106 (433)
T PF03092_consen 40 IKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLP-------------ASESSAAIAVVLLFLASFGYAFADVA 106 (433)
T ss_pred HhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcc-------------cccchhhhHHHHHHHHHHHHHHHHHh
Confidence 347889999987 2 344 44556666655555555542 10113344555566667778887888
Q ss_pred hhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHhccC
Q 010630 423 PYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPR 495 (505)
Q Consensus 423 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (505)
.-++..|....+++.+|...+.......+|+.++..+.|.+.+..+ +...|.+.+.+.++..+..+...+|
T Consensus 107 aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~--~~~~f~i~~~~~~l~~~~~~~~~~e 177 (433)
T PF03092_consen 107 ADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFG--PQGVFLISAALPLLMLIVALFLLEE 177 (433)
T ss_pred hhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCC--CeEEehHHHHHHHHHHHHHHHhhhh
Confidence 8889999887665668888999899999999999999999999865 6667777777766666556665554
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00082 Score=64.59 Aligned_cols=87 Identities=13% Similarity=0.132 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHhhhhcccchhhhHhhhcccccc-cchhhHhHHHHHHHHHHHHHHhhcccccccccccccccccccccc
Q 010630 139 IAVFVFGFWILDVANNMTQGPCRALLADLTGKDH-RRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVD 217 (505)
Q Consensus 139 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~~~~~~g~~ig~~l~~~~~~~~~~~~~~~~~~~~~ 217 (505)
...+.++..+.++|.|+.-+...++.+|.+++++ +...+.+.+.....++|..++..+.+++....
T Consensus 33 ~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~------------- 99 (372)
T PF00854_consen 33 LGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNY------------- 99 (372)
T ss_dssp -CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-------------
T ss_pred HHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhcccc-------------
Confidence 3567778888899999999999999999999873 22226788889999999999998877744333
Q ss_pred ccchhHHHHHHHHHHHHHHHHhh
Q 010630 218 CANLKSAFFLDVIFIAITTCISA 240 (505)
Q Consensus 218 ~~~~~~~f~~~~~~~~~~~~~~~ 240 (505)
+|.+.|.+.++..++..+..+
T Consensus 100 --~~~~~f~i~~~~~~~~~~~f~ 120 (372)
T PF00854_consen 100 --GWFLGFGIPAIGMLLALIVFL 120 (372)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHH
T ss_pred --chhhhhhHHHHHHHHHHHHHH
Confidence 899999998866665555443
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0013 Score=61.61 Aligned_cols=55 Identities=9% Similarity=-0.035 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHHhhHHHHHhhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHH
Q 010630 401 IVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVS 457 (505)
Q Consensus 401 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~ 457 (505)
+.++.++...++|+..|-...+...+..+.+|+ +++-.+-.+...+...|-..|.
T Consensus 342 ~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~--~e~e~aG~~m~~fl~~Gl~~G~ 396 (406)
T KOG1479|consen 342 SDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKP--SEKEAAGNLMVFFLVGGLALGS 396 (406)
T ss_pred CchHHHHHHHHHHhccchHhhheehhcCCCCCh--HHHHHHHHHHHHHHHHHHHHhh
Confidence 456677888899998888888887887777776 4443333334444344444443
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00022 Score=50.70 Aligned_cols=77 Identities=14% Similarity=0.147 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHHhccc
Q 010630 43 IQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSA 122 (505)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~ 122 (505)
+.++-..+.+.+|...++.++|..+.|++.+...+++.++.+...++.+ +..+|+ ++..+.+...++.+.+++..
T Consensus 4 mGigRFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~----~~~~~~-~~~~~l~~~~~~~~~ma~~~ 78 (85)
T PF06779_consen 4 MGIGRFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPR----HSRPRR-LLRAGLLLTVLSTAAMALTH 78 (85)
T ss_pred hhhHHHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh----cccHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 3456667788999999999999999999999999999999999999988 754444 44447777777777777665
Q ss_pred cc
Q 010630 123 DI 124 (505)
Q Consensus 123 ~~ 124 (505)
+.
T Consensus 79 ~~ 80 (85)
T PF06779_consen 79 SF 80 (85)
T ss_pred ch
Confidence 54
|
Note that many members are hypothetical proteins. |
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.13 Score=49.56 Aligned_cols=160 Identities=14% Similarity=0.103 Sum_probs=89.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhC---CCchhHHHHHHHhhh-hhhhcccccceeccccCCCCCCcchhH
Q 010630 29 PLRKLLKVASVAGGIQFGWALQLSLLTPYVQELG---IPHAWASIIWLCGPV-SGLFVQPLVGHFSDRCTSRFGRRRPFI 104 (505)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~s~~~~g~~~~~~~l-~~~i~~~~~G~l~D~~~~r~Grr~~~~ 104 (505)
.+++.+.+.+..++..+.++. +-..-+.+. .++..+..+=+..-+ ...+..++.+++++ +.-|++.+-
T Consensus 25 E~~kflpl~Ll~f~I~~ny~~----lR~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~----~lt~~~vF~ 96 (509)
T COG3202 25 ELKKFLPLALLFFCILFNYNL----LRSLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLN----ILTREKVFY 96 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHh----hcCHHHHHH
Confidence 345555555555555444333 223334443 345556666555555 55677888899999 888887776
Q ss_pred HHHHHHHHHHHHHHhcccc-cccccCCC--------CCCc--------chhHHHHHHHHHHHHhhhhcccc-hhhhHhhh
Q 010630 105 VCGAISIAVAVLLIGLSAD-IGWLLGDR--------GDFR--------PRAIAVFVFGFWILDVANNMTQG-PCRALLAD 166 (505)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~--------~~~~--------~~~~~~~~~~~~l~g~~~~~~~~-~~~~~~~~ 166 (505)
... ......++++++.-. ....++.+ +..+ ..+-|...+...+.-+-.+.... ..+....|
T Consensus 97 ~~~-~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNe 175 (509)
T COG3202 97 IIL-GFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANE 175 (509)
T ss_pred HHH-HHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 533 223333333332110 11111111 0000 01113333333333333344434 45788999
Q ss_pred cccccccchhhHhHHHHHHHHHHHHHHhhcccc
Q 010630 167 LTGKDHRRTRVANAYFSLFMAVGNILGYATGSF 199 (505)
Q Consensus 167 ~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l~~~ 199 (505)
.+..++-. |..+..+...+++..+++.+..+
T Consensus 176 itt~~eak--RFy~lf~l~~ni~lllsg~~~~~ 206 (509)
T COG3202 176 ITTIEEAK--RFYPLFGLGANISLLLSGEVTSW 206 (509)
T ss_pred hhhHHHhh--hhHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888 99999999999999998887665
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.014 Score=51.08 Aligned_cols=59 Identities=14% Similarity=0.210 Sum_probs=34.1
Q ss_pred cccchhhHhHHHHHHHHHHHHHHhhcccccccccccccccc-ccccccccchhHHHHHHHHHHHHHHHHhhhc
Q 010630 171 DHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLT-SACNVDCANLKSAFFLDVIFIAITTCISASA 242 (505)
Q Consensus 171 ~~r~~~~~~~~~~~~~~~g~~ig~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 242 (505)
++|+ ....+...+.++|.++.. .|++.. ........+|++.+.+.+++..+..++..++
T Consensus 2 k~K~--~~s~~n~~gf~iG~ii~~-----------ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~if 61 (267)
T PF07672_consen 2 KKKS--ILSQFNPWGFNIGTIIVN-----------IPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIF 61 (267)
T ss_pred Cccc--eeeeeccccchhhHHHHH-----------hhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455 555666667777777653 233322 1122222479999988886666665555444
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0017 Score=52.91 Aligned_cols=102 Identities=9% Similarity=-0.002 Sum_probs=75.3
Q ss_pred HHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHHhcccccccccCCCCCCcchhHHHHHHHHHHHHh
Q 010630 72 WLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDV 151 (505)
Q Consensus 72 ~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 151 (505)
.++......+.+++.+.+.+ ++|.|+.++++.... .+-.... +-++. +.++.+..+.|+
T Consensus 43 lai~Y~~~~~s~l~~P~iv~----~lg~K~sm~lg~~~y-~~y~~~~-~~~~~---------------~~l~~~s~l~G~ 101 (156)
T PF05978_consen 43 LAILYGSFAISCLFAPSIVN----KLGPKWSMILGSLGY-AIYIASF-FYPNS---------------YTLYPASALLGF 101 (156)
T ss_pred HHHHHHHHHHHHHhHHHHHH----HHhhHHHHHHHHHHH-HHHHHHH-HhhhH---------------HHHHHHHHHHhh
Confidence 34445555666677777889 999998888854443 3222222 22222 677788889999
Q ss_pred hhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhhc
Q 010630 152 ANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYAT 196 (505)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l 196 (505)
+.+..+.....++.+..++++|+ +..++.-.....+.++|..+
T Consensus 102 ~~a~lW~aqg~ylt~~s~~~~~~--~~~~ifw~i~~~s~i~G~~~ 144 (156)
T PF05978_consen 102 GAALLWTAQGTYLTSYSTEETIG--RNTGIFWAIFQSSLIFGNLF 144 (156)
T ss_pred hhHHhhHhhhHHHHHcCCHHHHh--hHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 88888888888787777654
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0015 Score=62.72 Aligned_cols=123 Identities=11% Similarity=-0.015 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhccc-ccchhHH
Q 010630 363 FIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESL-GLGQGLS 441 (505)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~g~~ 441 (505)
|.+.++.++..++.+++.+..... ..+.......+++...+.++|.|..-+...++..|.++++ ++++...
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~--------~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~ 73 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPP--------SLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSF 73 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSS--------SC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcc--------hhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhh
Confidence 467778888888888866653110 0011113456777778889999999999999999999986 5778888
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHhccC
Q 010630 442 LGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPR 495 (505)
Q Consensus 442 ~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (505)
+..+....++|..++..+.+++.+..| +...|.+.++..+++.+..+...+.
T Consensus 74 F~~fY~~in~G~~~~~~~~~~i~~~~~--~~~~f~i~~~~~~~~~~~f~~~~~~ 125 (372)
T PF00854_consen 74 FNWFYWGINIGSLFSPTLVPYIQQNYG--WFLGFGIPAIGMLLALIVFLSGRKR 125 (372)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHCS---HHHHHHHHHHHHHHHHHHHHCCCCT
T ss_pred HHHHHHHHhhhhHhhcccchhhccccc--hhhhhhHHHHHHHHHHHHHHhCCcC
Confidence 889999999999999999999998876 6778888888888887655544433
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.016 Score=40.85 Aligned_cols=67 Identities=10% Similarity=0.143 Sum_probs=45.0
Q ss_pred HHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHH--HHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Q 010630 291 LIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGL--MLNSVVLGITSVLMEKLCRKWGAGFIWGIS 368 (505)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~g~l~~r~g~~~~~~~~ 368 (505)
-..+++.+.+..+...|.+.|+.+. |.+....+. .+..+..+++.+++|.++||.++++.....
T Consensus 6 k~~yf~~f~~~g~~~Pfl~~~~~~~--------------Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~ 71 (77)
T PF12832_consen 6 KAFYFFYFAALGCLYPFLPLYLKQL--------------GLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLG 71 (77)
T ss_pred HHHHHHHHHHHHHHHhhhhHhhhhc--------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHH
Confidence 3455566666777778888887421 222222333 335677888999999999999998887765
Q ss_pred HHH
Q 010630 369 NIL 371 (505)
Q Consensus 369 ~~~ 371 (505)
..+
T Consensus 72 ~~~ 74 (77)
T PF12832_consen 72 SLF 74 (77)
T ss_pred HHH
Confidence 543
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.026 Score=54.62 Aligned_cols=134 Identities=17% Similarity=0.153 Sum_probs=81.3
Q ss_pred HhCCCchh-HHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHHhccccccccc-CCC--CCCc
Q 010630 60 ELGIPHAW-ASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLL-GDR--GDFR 135 (505)
Q Consensus 60 ~~g~s~~~-~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~ 135 (505)
..+.+... .++......++..++....+.+++|.+ |+||++.+.+...+ .....++..........+ .+. ....
T Consensus 272 ~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir-~fg~~~~~~~~~~~-~~~~~~li~l~~p~dap~~~t~~~~~~~ 349 (461)
T KOG3098|consen 272 KLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIR-GFGRKPTVLIGIII-HLIGFLLIHLSFPNDAPLRPTDSPPLLF 349 (461)
T ss_pred hccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhh-hcccCcchhHHHHH-HHHHHHHHhccccccCCCCCCccccccc
Confidence 44444433 333344455666677777888888766 68999777774444 444443333322111101 000 0111
Q ss_pred chhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhhccc
Q 010630 136 PRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGS 198 (505)
Q Consensus 136 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l~~ 198 (505)
........+..++.|++-+......+..+.+..| ++|. .+.++...-..++..++....+
T Consensus 350 ~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~-~~~~--~~fsi~kfyq~~~s~v~~f~~~ 409 (461)
T KOG3098|consen 350 TPSYYLALIIGFLLGFGDACFNTQRYVIIALLYP-DDRA--QAFSLFKFYQSVASCVAFFFSP 409 (461)
T ss_pred ccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHhc-CchH--HHHHHHHHHHHHHHHHHhhhhh
Confidence 2234455666778899999988888999999994 6677 7888888888888777655433
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.41 Score=45.74 Aligned_cols=126 Identities=12% Similarity=-0.018 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHh
Q 010630 347 ITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYAL 426 (505)
Q Consensus 347 i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 426 (505)
..-+....+.|.++.|.+++++.+...+...++.+.. +...+-+.-++.|++.+.- ...+++
T Consensus 56 ~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~-----------------sv~~mq~~q~~yg~~~a~e-vay~sY 117 (412)
T PF01770_consen 56 AFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGT-----------------SVLAMQLMQFFYGLATAAE-VAYYSY 117 (412)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHC-----------------cHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 3445667899999999999998888777777766663 5777888888888877663 356677
Q ss_pred HhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHh
Q 010630 427 VSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILA 492 (505)
Q Consensus 427 ~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 492 (505)
+=..+|+ ++--++.+......-+|..++..++=.+.+.-+.++.....+......++.++.+++
T Consensus 118 iys~v~~--~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fL 181 (412)
T PF01770_consen 118 IYSVVDK--EHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFL 181 (412)
T ss_pred heeecCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 7777787 677777888888888888888888776666544334444445444455555554443
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.86 Score=44.85 Aligned_cols=116 Identities=10% Similarity=0.038 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCC--------CCCCh-------hHHHHHHHHHH
Q 010630 347 ITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHD--------LPPNG-------IVIAALIIFTI 411 (505)
Q Consensus 347 i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~-------~~~~~~~~~~~ 411 (505)
+..++.+++++|++|++++......+...+.++.+.-+-..+ ..+|.+ .|... ..|...++.+.
T Consensus 59 ~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~-~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~ 137 (472)
T TIGR00769 59 IFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSD-LLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVM 137 (472)
T ss_pred HHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchh-hcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHH
Confidence 336788999999999999887776666666666555211111 001110 01000 01222233333
Q ss_pred HhhHHHHHhh-chhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHh
Q 010630 412 LGGPLAITYS-VPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQ 465 (505)
Q Consensus 412 ~g~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~ 465 (505)
..+-.....+ .-+++.+|.... ++..+.+++.....++|..+++.+..++.+
T Consensus 138 ~elw~~~vvS~lFW~fandi~t~--~qakRfy~l~~~ganlg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 138 AELWGSVVLSLLFWGFANQITTI--DEAKRFYALFGLGANVALIFSGRTIKYFSK 190 (472)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333 678999999998 999999999999999999999998888774
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.0089 Score=56.58 Aligned_cols=162 Identities=10% Similarity=0.102 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHH----hcc
Q 010630 286 TIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRK----WGA 361 (505)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~~r----~g~ 361 (505)
.+..+..+.+-..+++..-..|.++|+.+ + +... . ..+......-+.+.+.+++.|..+|| +||
T Consensus 33 ~li~v~~ia~Gvqf~wA~elsy~tPyl~~-l-Gvph--------k--~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GR 100 (498)
T KOG0637|consen 33 KLISVASIAAGVQFGWALELSYLTPYLQS-L-GVPH--------K--WSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGR 100 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccHHHHH-c-CCCc--------c--cccccccccccccceeccccccccccccccccc
Confidence 34445556666677888888899998842 1 1111 1 01122223455566777888999996 588
Q ss_pred hHHHHH-HHHHHHHHHHHHHHHHHHhhhccccCCCCCC-ChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhcccccchh
Q 010630 362 GFIWGI-SNILMALCFLAMLILYYVAIHMDYRGHDLPP-NGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQG 439 (505)
Q Consensus 362 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g 439 (505)
||..+. +.++.+++++++.+..+.......++.. |. .-.....++.+-+.-+.........-++..|+..+ +++-
T Consensus 101 RRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~-~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~--d~~~ 177 (498)
T KOG0637|consen 101 RRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERK-PVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARG--DAKK 177 (498)
T ss_pred ccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCccc-ccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccC--hhhh
Confidence 887664 5666667777777765433221100000 11 01223333344444555556666777899998777 4444
Q ss_pred H-HHHHHHHHHHHHHHHHHhhhhh
Q 010630 440 L-SLGVLNLAIVIPQIVVSMGSGP 462 (505)
Q Consensus 440 ~-~~g~~~~~~~~~~~i~~~~~g~ 462 (505)
+ +++.+..+..+|+.+|-.++++
T Consensus 178 ~~Ans~f~~f~avGnvLGY~~g~y 201 (498)
T KOG0637|consen 178 TRANSVFSFFMAVGNVLGYALGSY 201 (498)
T ss_pred hccchhHHHHHHhcceeeeecccc
Confidence 4 8888999999999888887763
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.093 Score=48.43 Aligned_cols=112 Identities=20% Similarity=0.102 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHH
Q 010630 339 MLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAI 418 (505)
Q Consensus 339 ~~~~~~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 418 (505)
....+...++.++.|++.||.|||+.+..+......+.+...+.. . ...+...+.....|++.+.
T Consensus 46 ~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~--------------~-~~~~~~~~~~~~~g~~~~~ 110 (338)
T COG0477 46 SAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAP--------------N-VGLALLLILRLLQGLGGGG 110 (338)
T ss_pred HHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCc--------------c-chHHHHHHHHHHHHhhhHH
Confidence 334555566668999999999999777776655444433333331 1 1245555555557888888
Q ss_pred HhhchhHhHhhhhcccccchhHHHHHHHH-HHHHHHHHHHhhhhhhHhh
Q 010630 419 TYSVPYALVSIRTESLGLGQGLSLGVLNL-AIVIPQIVVSMGSGPWDQL 466 (505)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~-~~~~~~~i~~~~~g~l~~~ 466 (505)
..+...+++.+..|+ .++++...+.... ...++..+++.+++.+...
T Consensus 111 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (338)
T COG0477 111 LLPVASALLSEWFPE-ATERGLAVGLVTLGAGALGLALGPLLAGLLLGA 158 (338)
T ss_pred HHHHHHHHHHHhcCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888999999884 2367888887777 5778888888887777765
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.12 E-value=1.2 Score=44.80 Aligned_cols=59 Identities=8% Similarity=0.085 Sum_probs=37.5
Q ss_pred HHHHHHhhHHHHHhhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHh-hhc
Q 010630 407 IIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQ-LFG 468 (505)
Q Consensus 407 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~-~~g 468 (505)
...++.++..|...|....+..+... ++.|...|-......+|+++|+++.+++.- .+|
T Consensus 115 ~~~~~~~~l~G~~~Pl~~~~~~~~~~---~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG 174 (521)
T PRK03612 115 VLVLLIGLLIGMEIPLLMRILQRIRD---QHLGHNVATVLAADYLGALVGGLAFPFLLLPRLG 174 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc---cchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcc
Confidence 33344556666665554444333211 245677787888889999999999988665 565
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.002 Score=64.55 Aligned_cols=153 Identities=12% Similarity=0.109 Sum_probs=2.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCC-----------CC------------
Q 010630 340 LNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGH-----------DL------------ 396 (505)
Q Consensus 340 ~~~~~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~------------ 396 (505)
.+-++..+..++..++.+|..|-|.+..+.++++++.+++.+-++....+++... .+
T Consensus 46 ~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~ 125 (539)
T PF03137_consen 46 SYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSD 125 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCccccccccccccccccccccccccccccCc
Confidence 3566667777777888888777778888999999999888776544332111000 00
Q ss_pred ---------C-CChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhh
Q 010630 397 ---------P-PNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQL 466 (505)
Q Consensus 397 ---------~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~ 466 (505)
. .....+.+++..++.|+|....+++..+++-|.+++ ++.+.+.|+......+|-++|-.++|...+.
T Consensus 126 ~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~--~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~ 203 (539)
T PF03137_consen 126 CQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSK--KNSPLYIGILYAMSILGPALGFLLGSFCLRI 203 (539)
T ss_dssp --------------------------SSS---------------------------------------------------
T ss_pred cccccccccccchHHHHHHHHHHHHHhccccCCccceeeeecccccc--ccCccchhhhhHHhhccHHHHHHHHHHHHhc
Confidence 0 011235667778899999999999999999999999 9999999999999999998888888877643
Q ss_pred hc--------------------CCCchHHHHHHHHHHHHHHHHHHhcc
Q 010630 467 FG--------------------GGNSPAFAVGGISALAGGLIAILAIP 494 (505)
Q Consensus 467 ~g--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (505)
+- +.++..|++.+.+.++.++..+.+.|
T Consensus 204 yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk 251 (539)
T PF03137_consen 204 YVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPK 251 (539)
T ss_dssp ------------------------------------------------
T ss_pred eeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 21 11223466777777766655554433
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.14 Score=51.18 Aligned_cols=125 Identities=10% Similarity=-0.091 Sum_probs=65.4
Q ss_pred HHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHH-HHHHHHHHHHhcccccccccCCCCCCcch
Q 010630 59 QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGA-ISIAVAVLLIGLSADIGWLLGDRGDFRPR 137 (505)
Q Consensus 59 ~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (505)
.-+|-+..+.+.+.+++.++.++++.+.|++.+ +.-|+...+-... ++..++..+....... . ..
T Consensus 43 ~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~----~~~~~~~~~e~~i~l~~~~~~~ll~~~~~~--------~--~~ 108 (521)
T PRK03612 43 YLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLR----DAAAGFVAVELLLALLGGLSALILYAAFAF--------Q--GL 108 (521)
T ss_pred HHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------H--HH
Confidence 457888888899999999999999988887765 3222221111111 1111111111111000 0 00
Q ss_pred hHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhhccccc
Q 010630 138 AIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFS 200 (505)
Q Consensus 138 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l~~~~ 200 (505)
.........++.++..|+..|....+..+... ++-+ +..|.......+|+++|.++.+++
T Consensus 109 ~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~-~~~g--~~~g~ly~~ntlGa~~G~l~~~~v 168 (521)
T PRK03612 109 SRLLLYVLVLLIGLLIGMEIPLLMRILQRIRD-QHLG--HNVATVLAADYLGALVGGLAFPFL 168 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchh--hhhhhhHhHHhHHHHHHHHHHHHH
Confidence 00111222334456666665555554443322 1223 456667778888888888887763
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.21 Score=48.42 Aligned_cols=133 Identities=14% Similarity=0.103 Sum_probs=94.5
Q ss_pred HhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHH---Hhccccccccc
Q 010630 52 SLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLL---IGLSADIGWLL 128 (505)
Q Consensus 52 ~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 128 (505)
..+..|+..-|+++..+|..-+...+.+..+.....++.+ |+|..|.=+.+ ...-..++.+ ..+.+..
T Consensus 279 ~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~----riGlvr~G~~~-l~~q~~~L~~~v~~~~~~~~---- 349 (432)
T PF06963_consen 279 GLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMK----RIGLVRAGLWS-LWWQWVCLALCVVSFWAPGS---- 349 (432)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhcchhhHHHH-HHHHHHHHHHHHHHHhcCCC----
Confidence 4556778788999999999999999999999999999999 99977655542 2222211111 1122210
Q ss_pred CCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhhcccc
Q 010630 129 GDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSF 199 (505)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l~~~ 199 (505)
.........++.+..+.-+|.=.......-++.|..|+++|+ ..+|......++-.++-..++-.
T Consensus 350 ----~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg--~v~gvq~sl~~lf~ll~~~~~ii 414 (432)
T PF06963_consen 350 ----PFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERG--AVSGVQNSLQSLFELLSFVLTII 414 (432)
T ss_pred ----CchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhh--HHHHHHHHHHHHHHHHHHHHHhc
Confidence 101233345555555556777777888889999999999999 99999999999888887777654
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.62 Score=42.08 Aligned_cols=61 Identities=10% Similarity=0.103 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHHhhHHHHHhhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhh
Q 010630 401 IVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPW 463 (505)
Q Consensus 401 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l 463 (505)
+.+.+.+....=|+-.|..+.-.+--+.+..++ ++|--+++...+...+|-.++..++=.+
T Consensus 341 si~ivf~lI~~EGLlGGasYVNTf~~i~~e~~p--d~rEfamsavs~sDS~Gi~lA~~lalpl 401 (409)
T KOG3880|consen 341 SIWIVFALILFEGLLGGASYVNTFHNIHKETEP--DVREFAMSAVSISDSIGIFLAGLLALPL 401 (409)
T ss_pred HHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCc--hHHHHhHhhheecchhhHHHHHHHhccc
Confidence 456666666666776666665555556665666 7788888888777777776666654433
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.14 Score=52.41 Aligned_cols=148 Identities=12% Similarity=0.088 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhcccc----------C----------------CCCC--
Q 010630 346 GITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYR----------G----------------HDLP-- 397 (505)
Q Consensus 346 ~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~----------------~~~~-- 397 (505)
.+...+..+...|..|-+.+-++.++++++.++..+-++....+.+. + +..+
T Consensus 146 ~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 225 (735)
T KOG3626|consen 146 LLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPEN 225 (735)
T ss_pred hhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCc
Confidence 33344556666777777888889999999998888765443221111 0 0000
Q ss_pred -----CCh--hHHHHHHHHHHHhhHHHHHhhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcC-
Q 010630 398 -----PNG--IVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGG- 469 (505)
Q Consensus 398 -----~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~- 469 (505)
... .+..+++..++.|+|....+++..+++-|.+.+ ++...+.|+......+|-++|-++++++...+-+
T Consensus 226 ~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~--~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~ 303 (735)
T KOG3626|consen 226 SKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKK--KNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDF 303 (735)
T ss_pred ccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccc--cCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeecc
Confidence 000 223556677788999999999999999999888 8999999999999999999988888887654311
Q ss_pred ----------------CCchHHHHHHHHHHHHHHHHHHhccC
Q 010630 470 ----------------GNSPAFAVGGISALAGGLIAILAIPR 495 (505)
Q Consensus 470 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (505)
.++..|++++.+.++..+..+++.++
T Consensus 304 ~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~ 345 (735)
T KOG3626|consen 304 GLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKE 345 (735)
T ss_pred ccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 12234788888888888666655443
|
|
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.0049 Score=57.33 Aligned_cols=57 Identities=9% Similarity=0.030 Sum_probs=3.2
Q ss_pred hHHHHHHHHHHHhhHHHHHhhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhh
Q 010630 401 IVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMG 459 (505)
Q Consensus 401 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~ 459 (505)
+.+..++...++|+..|-..+....+..+.+++ +++..+-.+.+.+..+|-.+|..+
T Consensus 247 ~d~~~~i~~~l~g~TNGyl~tl~m~~~p~~v~~--~e~e~aG~~~~~~L~~Gl~~Gs~l 303 (309)
T PF01733_consen 247 SDAWFIILMLLFGFTNGYLSTLAMMYAPKSVSP--EERELAGSVMSFFLSFGLFIGSVL 303 (309)
T ss_dssp --------------------HHHH-----------------------------------
T ss_pred chHHHHHHHHHHHHccchhhhceeeeCCCcCCH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667778889998888888888888888776 566555555556656665555554
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.75 Score=41.98 Aligned_cols=38 Identities=13% Similarity=0.079 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Q 010630 336 LGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMA 373 (505)
Q Consensus 336 ~~~~~~~~~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~ 373 (505)
..+..+++...+.+.+.|.+.+++||-.....+.+.--
T Consensus 314 f~m~cfgv~~Av~S~~~g~L~~~~gr~~~~v~gavv~l 351 (390)
T KOG3097|consen 314 FAMACFGVGDAVASSLFGLLGKWIGRPPLLVLGAVVHL 351 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHH
Confidence 44455777777888899999999999888877665443
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.72 Score=44.08 Aligned_cols=132 Identities=11% Similarity=-0.063 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHH
Q 010630 338 LMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLA 417 (505)
Q Consensus 338 ~~~~~~~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 417 (505)
++...+-.++..++.++..+|+..+.-...+.++..+++++..+.. +.+.-++..++.+++.+
T Consensus 65 lladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~-----------------~v~~~l~Gv~las~ssg 127 (402)
T PF02487_consen 65 LLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSP-----------------SVWVRLLGVVLASLSSG 127 (402)
T ss_pred HHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeecc-----------------chhHHHHHHHHHhhhhh
Confidence 3444566677778899999998765555556667777777776652 45666777777787777
Q ss_pred HHhhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHhcc
Q 010630 418 ITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIP 494 (505)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (505)
..-.....+.. .+++ ...+.+++....++.+|+...-.+.+ .|-.....+++...+.++-.+..++..+
T Consensus 128 ~GE~tfL~lt~-~y~~------~~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~L~ 196 (402)
T PF02487_consen 128 LGEVTFLSLTH-FYGK------SSLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFLLP 196 (402)
T ss_pred hhHHHHHHHHH-hcCc------cccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 76655555543 4443 23455666667778888887766666 5544455555555444333333333333
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.32 E-value=1.4 Score=41.30 Aligned_cols=29 Identities=21% Similarity=0.482 Sum_probs=18.9
Q ss_pred HHHHHHHH-----HhcchHHHHH-HHHHHHHHHHH
Q 010630 350 VLMEKLCR-----KWGAGFIWGI-SNILMALCFLA 378 (505)
Q Consensus 350 ~~~g~l~~-----r~g~~~~~~~-~~~~~~~~~~~ 378 (505)
+++..+.| |+||||.+++ +..+.+..+.+
T Consensus 81 llWaPiVDs~y~k~~GrrksWvvp~q~llG~~mll 115 (510)
T KOG3574|consen 81 LLWAPIVDSVYSKRFGRRKSWVVPCQYLLGLFMLL 115 (510)
T ss_pred HHHHhhhHHHHHHhhccccceeeehHHHHHHHHHH
Confidence 56777777 9999998765 44444443333
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.15 E-value=4.2 Score=41.33 Aligned_cols=147 Identities=10% Similarity=0.006 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHHHHhhhcccc----CC----CCCCChhHHHHHHHHHHHh
Q 010630 343 VVLGITSVLMEKLCRKW-GAGFIWGISNILMALCFLAMLILYYVAIHMDYR----GH----DLPPNGIVIAALIIFTILG 413 (505)
Q Consensus 343 ~~~~i~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~----~~~~~~~~~~~~~~~~~~g 413 (505)
.......+++++++|.+ ||-+.+.++.++..+++.++............. +. .-+.......+...+-+..
T Consensus 84 G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia 163 (571)
T KOG1237|consen 84 GTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIA 163 (571)
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHhe
Confidence 33445667889999987 888888888888888877666554222110000 00 0011112233444455556
Q ss_pred hHHHHHhhchhHhHhhhhccc----ccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHH
Q 010630 414 GPLAITYSVPYALVSIRTESL----GLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIA 489 (505)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~----~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 489 (505)
+|.+..-+...+.-+|.+++. ++.....+..+....+.|..++-.+.-++.+..+ +...|-+..++..++.++.
T Consensus 164 ~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~--w~lgf~i~~~~~~lai~iF 241 (571)
T KOG1237|consen 164 LGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVG--WKLGFGIPTVLNALAILIF 241 (571)
T ss_pred eccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhccc--ceeeccHHHHHHHHHHHHH
Confidence 677877788888888888831 2233466777778888888888888888877755 4556666666666655444
Q ss_pred HH
Q 010630 490 IL 491 (505)
Q Consensus 490 ~~ 491 (505)
+.
T Consensus 242 ~~ 243 (571)
T KOG1237|consen 242 LP 243 (571)
T ss_pred Hc
Confidence 43
|
|
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.92 E-value=1.8 Score=39.67 Aligned_cols=73 Identities=16% Similarity=0.077 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhh
Q 010630 342 SVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYS 421 (505)
Q Consensus 342 ~~~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 421 (505)
...-+.+.++.+.+.+++|-|+.+.++.......... -+- | ....++......|++.+....
T Consensus 68 y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA~-Nl~--------------p---r~~tlVPa~~~~G~aa~p~W~ 129 (390)
T KOG3097|consen 68 YLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIAA-NLE--------------P---RYETLVPAGLVLGMAAGPIWA 129 (390)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh-hcc--------------h---hHHhhccHHHhhccccccccc
Confidence 3444566677779999999999988766544332211 111 2 244456666777887777665
Q ss_pred chhHhHhhhhc
Q 010630 422 VPYALVSIRTE 432 (505)
Q Consensus 422 ~~~~~~~~~~~ 432 (505)
..-+++++...
T Consensus 130 SkgtYlT~~g~ 140 (390)
T KOG3097|consen 130 SKGTYLTPMGQ 140 (390)
T ss_pred cCcceecHHHH
Confidence 55555555433
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.86 E-value=1.9 Score=38.33 Aligned_cols=142 Identities=10% Similarity=0.141 Sum_probs=81.3
Q ss_pred HHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHH--HhcccccccccCCCCCCcchhHHHHHHH
Q 010630 68 ASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLL--IGLSADIGWLLGDRGDFRPRAIAVFVFG 145 (505)
Q Consensus 68 ~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (505)
-|.+.+.+++...+++-+..++..|.+.|.- .++....+..+..+.+ .....+. . ......-+++
T Consensus 284 hGfiFatFMlASmLGSSla~Rl~s~s~~~ve---~ymqivf~vs~a~l~Lpilt~~vsP--------~--kes~~~s~i~ 350 (454)
T KOG4332|consen 284 HGFIFATFMLASMLGSSLASRLLSRSSPKVE---SYMQIVFLVSIAALLLPILTSSVSP--------S--KESPSESLIG 350 (454)
T ss_pred chhHHHHHHHHHHHhhHHHHHHHhcCCcccc---hHHHHHHHHHHHHHHHHHHHhccCC--------C--cCCchHHHHH
Confidence 4788888888889998888877774433332 2222222222222222 1111111 1 1111233677
Q ss_pred HHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhhccccccccccccccccccccccccchhHHH
Q 010630 146 FWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAF 225 (505)
Q Consensus 146 ~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 225 (505)
+++.-.+.|..+|...-+-.+..|++.|. ..+-+...-.++-.-++-.. ...+..+.+-|..|
T Consensus 351 F~~~E~cvGlfwPSimkmRsqyIPEears--timNfFRvPLnifvClvLyn---------------lh~~~~p~~tr~mf 413 (454)
T KOG4332|consen 351 FCLFEACVGLFWPSIMKMRSQYIPEEARS--TIMNFFRVPLNIFVCLVLYN---------------LHVDAFPTTTRNMF 413 (454)
T ss_pred HHHHHHHHhhcchHHHHHHHhhCCHHHHh--hhhhheechhhHhhhhhhee---------------cccccCccccchhh
Confidence 78888899999999999999999999998 66655544444332222111 01111223667778
Q ss_pred HHHHHHHHHHHHHh
Q 010630 226 FLDVIFIAITTCIS 239 (505)
Q Consensus 226 ~~~~~~~~~~~~~~ 239 (505)
-++.....+..+..
T Consensus 414 ~icS~~~~~a~i~~ 427 (454)
T KOG4332|consen 414 GICSAFLFVASILQ 427 (454)
T ss_pred hhhHHHHHHHHHHH
Confidence 88776666665544
|
|
| >KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.37 E-value=16 Score=34.55 Aligned_cols=65 Identities=17% Similarity=0.104 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHhCCC-chhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHH
Q 010630 37 ASVAGGIQFGWALQLSLLTPYVQELGIP-HAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIV 105 (505)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s-~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~ 105 (505)
-...+....+.-+.......++..++-+ -.....-..+-.....+..++.|...| +..|+|++..
T Consensus 33 y~gy~lt~wgdR~W~F~VsL~M~~L~gnsl~lvAvyglvesgs~lvlg~ivGq~vD----g~sr~Kvi~~ 98 (503)
T KOG2601|consen 33 YLGYFLTTWGDRMWEFSVSLFMILLGGNSLLLVAVYGLVESGSQLVLGPIVGQWVD----GMSRVKVIQT 98 (503)
T ss_pred hHHHHHhHhhHhHHHHHHHHHHHHHcCceehhHHHHHHHHHhHHHhhHHHHHHHhc----chhHHHHHHH
Confidence 3344444455555555666777766643 334444444445566788889999999 9988887654
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=89.20 E-value=25 Score=35.02 Aligned_cols=118 Identities=13% Similarity=0.047 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCC--------CCCC-------hhHHHHHHHH
Q 010630 345 LGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHD--------LPPN-------GIVIAALIIF 409 (505)
Q Consensus 345 ~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~-------~~~~~~~~~~ 409 (505)
+++...+..++++|+++.++..+....+...+.++++.-+- ..+..+|+. ++.. -..|...+..
T Consensus 72 a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP-~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfY 150 (491)
T PF03219_consen 72 AILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYP-NRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFY 150 (491)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhh-chhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHH
Confidence 34556778999999999998876666665555555554211 111111111 1110 0012222222
Q ss_pred HHHhhHHHHHhh-chhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHh
Q 010630 410 TILGGPLAITYS-VPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQ 465 (505)
Q Consensus 410 ~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~ 465 (505)
+..-+-.....+ .-+.+.+|.... ++..+.++++....++|.++++.+...+.+
T Consensus 151 v~aElwgsvvlSlLFW~fAN~itt~--~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 151 VMAELWGSVVLSLLFWGFANEITTV--EEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222221122222 458899999998 999999999999999999998888888777
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.75 E-value=2.2 Score=40.62 Aligned_cols=134 Identities=16% Similarity=0.130 Sum_probs=80.3
Q ss_pred HHHHHHHhhhhHHHH---hCC-CchhHHHHHHH-hhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHHhc
Q 010630 46 GWALQLSLLTPYVQE---LGI-PHAWASIIWLC-GPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGL 120 (505)
Q Consensus 46 ~~~~~~~~~~~~~~~---~g~-s~~~~g~~~~~-~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~ 120 (505)
.+.......|-+..+ -+. ++...-++... +.+.+.++.+...++-+ + +||+..+.... =.+...++.+
T Consensus 258 vy~VTLsiFPg~~~~~~~~~~~~~~y~~~~~~l~fN~~d~vG~~~a~~~~~----~-~~r~l~i~v~l--R~lfiPlF~~ 330 (406)
T KOG1479|consen 258 VYFVTLSIFPGFCSEVKSSGLLGDWYALLLVFLSFNVFDLIGSILAALLTW----P-DPRKLTIPVLL--RLLFIPLFLL 330 (406)
T ss_pred eeeeeeEecchhhcccccCcccchhhHHHHHHHHhHHHHHhhhhhhhcccC----C-CCceehHHHHH--HHHHHHHHHH
Confidence 333444455655422 122 34444555566 88999999888877777 4 35555544222 2222222221
Q ss_pred ccc--cccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhhc
Q 010630 121 SAD--IGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYAT 196 (505)
Q Consensus 121 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l 196 (505)
+.. .... ...-++.++...++|+..|=.......+.++..|++++. .+..+.......|...|..+
T Consensus 331 cn~~~~~v~--------~~~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e--~aG~~m~~fl~~Gl~~G~~~ 398 (406)
T KOG1479|consen 331 CNYPPLPVV--------FESDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKE--AAGNLMVFFLVGGLALGSLL 398 (406)
T ss_pred hccCCCCce--------ecCchHHHHHHHHHHhccchHhhheehhcCCCCChHHHH--HHHHHHHHHHHHHHHHhhHH
Confidence 111 1111 111266677777888888877777888889999988887 67777777777777777655
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=87.47 E-value=6.4 Score=38.63 Aligned_cols=56 Identities=23% Similarity=0.327 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhhcc
Q 010630 140 AVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATG 197 (505)
Q Consensus 140 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l~ 197 (505)
+..++..++.|+..|-.......+.++..++++|. .+..+...+..+|..+|..++
T Consensus 373 ~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e--~aG~~~~~~l~~Gl~~Gs~l~ 428 (437)
T TIGR00939 373 AYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHERE--VAGALMVIFLLVGLALGAVLS 428 (437)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 55666677888888888888888888999988888 888888888888888887663
|
|
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.00 E-value=16 Score=34.21 Aligned_cols=99 Identities=11% Similarity=0.106 Sum_probs=68.7
Q ss_pred HHHHHHHhhhhhhhcccccceeccccCCCCCCc-chhHHHHHHHHHHHHHHHhcccccccccCCCCCCcchhHHHHHHHH
Q 010630 68 ASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRR-RPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGF 146 (505)
Q Consensus 68 ~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (505)
-|..-++..+.+++.+...|++-- ++.|. ..++..+....+...+.+....++ |+..++.
T Consensus 273 NG~veAv~tlLGa~~~~~~g~l~i----~w~r~g~~ll~~~s~~~agllf~m~~t~~I---------------w~~Ya~y 333 (433)
T KOG3810|consen 273 NGAVEAVSTLLGAIAALAAGYLNI----NWNRWGDLLLAVGSAVQAGLLFIMAQTQHI---------------WVCYAGY 333 (433)
T ss_pred cCHHHHHHHHHHHHHHHHHHheee----ccchhhHHHHHHHHHHhhhhhhhhhcccce---------------ehhhhhH
Confidence 366667778888999999999887 55554 344444555455555555555554 7777777
Q ss_pred HHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHH
Q 010630 147 WILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMA 187 (505)
Q Consensus 147 ~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 187 (505)
.+.........+.+..-+++....+.-+ ..+|+..+..-
T Consensus 334 vlfr~~y~l~itiA~~~iA~nL~~e~~g--LvFGiNTFvAl 372 (433)
T KOG3810|consen 334 VLFRVIYQLTITIATFQIARNLSSELFG--LVFGINTFVAL 372 (433)
T ss_pred HHHHhhHhhhhhHHHHHHHHhhhhhhhe--eeeehHHHHHH
Confidence 7777777777888888888888877777 78777654433
|
|
| >COG5336 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=80.01 E-value=16 Score=27.13 Aligned_cols=41 Identities=24% Similarity=0.191 Sum_probs=30.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHH
Q 010630 436 LGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAV 477 (505)
Q Consensus 436 ~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~ 477 (505)
..++.+.++--..-.+++.+.....||+.|++-+ ..+++++
T Consensus 38 s~k~~~~a~klssefIsGilVGa~iG~llD~~ag-TsPwglI 78 (116)
T COG5336 38 SIKGYAQAFKLSSEFISGILVGAGIGWLLDKFAG-TSPWGLI 78 (116)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcC-CCcHHHH
Confidence 5667777777777788888888889999998853 3444443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 505 | |||
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 100.0 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 100.0 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.97 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.97 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.96 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.96 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.93 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.47 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.44 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.39 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.36 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.34 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.22 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.18 |
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-32 Score=269.15 Aligned_cols=386 Identities=12% Similarity=0.051 Sum_probs=272.1
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHH
Q 010630 28 VPLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCG 107 (505)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~ 107 (505)
..++.+..+....+...+......+.+|.+.+++|.|..+.+++.+++.++..+++++.|+++| |+|||+.++..
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~d----r~g~r~~l~~~- 97 (438)
T 3o7q_A 23 SYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMK----KLSYKAGIITG- 97 (438)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHH----HSCHHHHHHHH-
T ss_pred HhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHH----HhcchHHHHHH-
Confidence 3444555555555666666677788889999999999999999999999999999999999999 99999988874
Q ss_pred HHHHHHHHHHH---hcccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHH
Q 010630 108 AISIAVAVLLI---GLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSL 184 (505)
Q Consensus 108 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 184 (505)
.+...++.++. .+++++ +.+++.+++.|++.+...+...+++.|++|+++|+ +++++.+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~---------------~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~--~~~~~~~~ 160 (438)
T 3o7q_A 98 LFLYALGAALFWPAAEIMNY---------------TLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGH--FRLNLAQT 160 (438)
T ss_dssp HHHHHHHHHHHHHHHHTTCH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHH--HHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccH---------------HHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHH--HHHHHHHH
Confidence 44455555555 555555 78889999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHhhcccccc-cccccccc------------ccccccccccchhHHHHHHHHHHHHHHHHhhhc-cccCCCCC
Q 010630 185 FMAVGNILGYATGSFSG-WFKILPFT------------LTSACNVDCANLKSAFFLDVIFIAITTCISASA-AHEVPLGS 250 (505)
Q Consensus 185 ~~~~g~~ig~~l~~~~~-~~~~~~~~------------~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~-~~e~~~~~ 250 (505)
..++|..+++.+++.+. ... ... ..........+||+.|++.+++..+..++.++. .||++++.
T Consensus 161 ~~~~g~~~g~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 238 (438)
T 3o7q_A 161 FNSFGAIIAVVFGQSLILSNV--PHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDN 238 (438)
T ss_dssp HHHHHHHHHHHHTTHHHHTSS--CCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTC
T ss_pred HHHHHHHHHHHHHHHHHhccc--ccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccc
Confidence 99999999999988733 111 000 000000000128999987776665555444332 23332211
Q ss_pred CCCCCCCcccCCCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhHhHHhhhHHH-HHHHHhCCCCCCcccccc
Q 010630 251 HDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDW-MGREIYGGEPNEGQNYAT 329 (505)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 329 (505)
+++ ++ +++..++.++.+++ |.++...+..++..........+.+.| +. +.++.+.
T Consensus 239 ~~~---------~~----~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~-------- 294 (438)
T 3o7q_A 239 HSD---------AK----QGSFSASLSRLARI--RHWRWAVLAQFCYVGAQTACWSYLIRYAVE-EIPGMTA-------- 294 (438)
T ss_dssp CCC---------SS----TTSHHHHHHHHTTC--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HSTTCCH--------
T ss_pred ccc---------cc----ccchhhhHHHHHhC--hHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccCCcch--------
Confidence 000 00 11112344556666 778887777777777777777788888 53 3333222
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHH
Q 010630 330 GVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIF 409 (505)
Q Consensus 330 ~~~~~~~~~~~~~~~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (505)
...........+...++.++.+++.||+|||+.+..+.++.+++.++..+.. +.+ ..+..
T Consensus 295 --~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~-~~~~~ 354 (438)
T 3o7q_A 295 --GFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAG-----------------GHV-GLIAL 354 (438)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCC-----------------HHH-HHHHH
T ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcC-----------------CcH-HHHHH
Confidence 1122334445777888999999999999999999988888877776655541 222 34445
Q ss_pred HHHhhHHHHHhhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHH
Q 010630 410 TILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGG 486 (505)
Q Consensus 410 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 486 (505)
.+.|++.+...+..+++..|..|+ + ++.+.++.. ...+++.++|.+.|.+.|..| ++...|.+.+++.++..
T Consensus 355 ~~~g~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~ 426 (438)
T 3o7q_A 355 TLCSAFMSIQYPTIFSLGIKNLGQ--D-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAG-NIPTAELIPALCFAVIF 426 (438)
T ss_dssp HHHHHHHTTHHHHHHHHHHSSCGG--G-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHT-SSGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhccc--c-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHH
Confidence 777888888888888998998886 4 777777766 667999999999999999985 34556665554444433
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-34 Score=285.01 Aligned_cols=389 Identities=13% Similarity=0.085 Sum_probs=283.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHH
Q 010630 35 KVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVA 114 (505)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~ 114 (505)
......+...+......+.+|.+.+++ .+..+.+++.+++.++..++++++|+++| |+|||+.++. +.+...++
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~d----r~g~r~~l~~-~~~~~~~~ 105 (451)
T 1pw4_A 32 GIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSD----RSNPRVFLPA-GLILAAAV 105 (451)
T ss_dssp HHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHH----HSCHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHH----hcCchHHHHH-HHHHHHHH
Confidence 333344444455555667788888889 99999999999999999999999999999 9999987777 55556666
Q ss_pred HHHHhc----ccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHH
Q 010630 115 VLLIGL----SADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGN 190 (505)
Q Consensus 115 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~ 190 (505)
.+++.+ ++++ +.+++++++.|++.+...+...+++.|++|+++|+ +++++.....++|.
T Consensus 106 ~~~~~~~~~~~~~~---------------~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~--~~~~~~~~~~~~g~ 168 (451)
T 1pw4_A 106 MLFMGFVPWATSSI---------------AVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERG--GIVSVWNCAHNVGG 168 (451)
T ss_dssp HHHHHHCHHHHSSS---------------SHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHH--HHHHHHHHHHHHHH
T ss_pred HHHHHhhhhccccH---------------HHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhh--HHHHHHHHHHHHHH
Confidence 666666 6665 67888899999999999999999999999999999 99999999999999
Q ss_pred HHHhhccccccccccccccccccccccccc-hhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCC---CCCc
Q 010630 191 ILGYATGSFSGWFKILPFTLTSACNVDCAN-LKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGH---EQSS 266 (505)
Q Consensus 191 ~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~---~~~~ 266 (505)
++++.+++.+.... + ||+.|++.+++.++..++.++.+||++++...+++++.+++. .+.+
T Consensus 169 ~~g~~~~~~l~~~~---------------g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (451)
T 1pw4_A 169 GIPPLLFLLGMAWF---------------NDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEK 233 (451)
T ss_dssp TSHHHHHHHHHHHT---------------CCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC--------
T ss_pred HHHHHHHHHHHHHh---------------ccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhh
Confidence 99999987632211 6 999999998888877777777888876654322211111110 0000
Q ss_pred chHHHHHHH--HHHHHhcccHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHH
Q 010630 267 DVHEAFLWE--LFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVV 344 (505)
Q Consensus 267 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (505)
++++...++ .++.+++ |.++...+..++..........+.+.|+.+ .++.+ ............++
T Consensus 234 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~----------~~~~~~~~~~~~~~ 300 (451)
T 1pw4_A 234 AEQELTAKQIFMQYVLPN--KLLWYIAIANVFVYLLRYGILDWSPTYLKE-VKHFA----------LDKSSWAYFLYEYA 300 (451)
T ss_dssp -----CCTHHHHHHTSSC--HHHHHHHHHHHHHHHHHHHHHHHHHHHBTT-BSCCC----------HHHHHHHHHHHHHH
T ss_pred hhcccccccchHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCC----------HHHHHHHHHHHHHH
Confidence 001111111 2334455 788888888888777777777778877632 12211 11122334446777
Q ss_pred HHHHHHHHHHHHHHh--cchHHHHHHHHHHH-HHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhh
Q 010630 345 LGITSVLMEKLCRKW--GAGFIWGISNILMA-LCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYS 421 (505)
Q Consensus 345 ~~i~~~~~g~l~~r~--g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 421 (505)
.+++.++.+++.||+ ++|+.+..+..+.. ++++++.+. +. .+.+...+...+.|++.+...+
T Consensus 301 ~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~-~~~~~~~~~~~~~g~~~~~~~~ 365 (451)
T 1pw4_A 301 GIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMN--------------PA-GNPTVDMICMIVIGFLIYGPVM 365 (451)
T ss_dssp HHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSC--------------CT-TCHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHh--------------cc-cCHHHHHHHHHHHHHHHhchHH
Confidence 888999999999999 99988877766655 444443332 11 1355566677778888888777
Q ss_pred chhHhHhhhhcccccchhHHHHHHHHHHHH-HHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHhc
Q 010630 422 VPYALVSIRTESLGLGQGLSLGVLNLAIVI-PQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAI 493 (505)
Q Consensus 422 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~-~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (505)
..++++.|..|+ +++|+++|+.+....+ +..++|.+.|.+.+..| +...|++.+++.+++.++.+...
T Consensus 366 ~~~~~~~~~~~~--~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 366 LIGLHALELAPK--KAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG--WDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp HHHHHHHHTSCT--THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC--SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhch--hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999998 9999999999999999 99999999999999876 67778887777777766655543
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.9e-30 Score=256.05 Aligned_cols=402 Identities=12% Similarity=0.050 Sum_probs=262.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHHH-H-----hCCCchhHHHHHHHhhhhhhhcccccceeccccCCC-CCCcchh
Q 010630 31 RKLLKVASVAGGIQFGWALQLSLLTPYVQ-E-----LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSR-FGRRRPF 103 (505)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r-~Grr~~~ 103 (505)
+..+......+...+.++....+++.|++ + +|.+..+.+++.+++.++..+++++.|+++| | +|||+.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~~g~r~~~ 88 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVAD----RIIGARPAV 88 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HTSCHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh----ccccchHHH
Confidence 34555555566666677777777777764 4 8999999999999999999999999999999 9 8999888
Q ss_pred HHHHHHHHHHHHHHHhcccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHH
Q 010630 104 IVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFS 183 (505)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 183 (505)
+. +.+...++.+++.++++. +.+++++++.|++.+...+...+++.|++|+++|+.+.++++.+
T Consensus 89 ~~-~~~~~~~~~~~~~~~~~~---------------~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 152 (491)
T 4aps_A 89 FW-GGVLIMLGHIVLALPFGA---------------SALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFV 152 (491)
T ss_dssp HH-HHHHHHHHHHHHHSCCST---------------THHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHhhhH---------------HHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHH
Confidence 77 555566666677777665 67888999999999999999999999999998844227888888
Q ss_pred HHHHHHHHHHhhccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCCC
Q 010630 184 LFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHE 263 (505)
Q Consensus 184 ~~~~~g~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 263 (505)
...++|..+++.+++.+.... +|++.|++.++..++..++..+..++..++..++.+++. +.
T Consensus 153 ~~~~~g~~~~~~~~~~l~~~~---------------g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~- 214 (491)
T 4aps_A 153 FGINLGAFIAPLIVGAAQEAA---------------GYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPL--AP- 214 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS---------------CHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCC--SH-
T ss_pred HHHHHHHHHHHHHHHHHHhhh---------------hHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCcc--cc-
Confidence 999999999999988743322 899999998776666555554443433222111111100 00
Q ss_pred CCcchHHHHHH------------------------------------------------HHHH--HHhcccHHHHHHHHH
Q 010630 264 QSSDVHEAFLW------------------------------------------------ELFG--TFRYFSGTIWIILIV 293 (505)
Q Consensus 264 ~~~~~~~~~~~------------------------------------------------~~~~--~~~~~~~~~~~~~~~ 293 (505)
++.++..+ +... ..++.....+.+.+.
T Consensus 215 ---~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (491)
T 4aps_A 215 ---EEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIA 291 (491)
T ss_dssp ---HHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTHHHHHHH
T ss_pred ---chhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHH
Confidence 00000000 0000 001000112333333
Q ss_pred HHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH-----HH
Q 010630 294 TALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWG-----IS 368 (505)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~~r~g~~~~~~-----~~ 368 (505)
.++.+........+.+.|.. +.++.+.... + .......+...++.++.+++.||++||+... .+
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~-----~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~ 360 (491)
T 4aps_A 292 AVLFWAIEEQGSVVLATFAA-ERVDSSWFPV-----S-----WFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVG 360 (491)
T ss_dssp HHHHHHHHGGGGTHHHHHHH-HSCCCSSSCS-----G-----GGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHH
T ss_pred HHHHHHHHhhccHHHHHHHH-HHhccCccCH-----H-----HHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHH
Confidence 44444444444444555553 3233222111 1 1122345566677888999999999886544 66
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhcccccchhHHHHHHHHH
Q 010630 369 NILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLA 448 (505)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 448 (505)
..+.++++.++......... +...+.+...+..++.|++.+...+..++++.|..|+ +.+|++.|+.+..
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~--~~~g~~~g~~~~~ 430 (491)
T 4aps_A 361 LMFAGLSFLLMAIPGALYGT--------SGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPK--AFNSQMMSMWFLS 430 (491)
T ss_dssp HHHHHHHHTTTHHHHHHCCC--------CTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTT--TCSSSSTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCC--------CCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCH--HHHHHHHHHHHHH
Confidence 66666666655554211110 0111345566777888888888888889999999999 9999999999999
Q ss_pred HHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHhccCCC
Q 010630 449 IVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPRSS 497 (505)
Q Consensus 449 ~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (505)
..+|..+++.+.+.+.+. + +...|...+++.+++.++.+...++.+
T Consensus 431 ~~~g~~i~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (491)
T 4aps_A 431 SSVGSALNAQLVTLYNAK-S--EVAYFSYFGLGSVVLGIVLVFLSKRIQ 476 (491)
T ss_dssp HHHHHHHHHHHGGGGGGS-S--TTHHHHHTHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHhcc-c--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988775 2 456777777777777766666655443
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.4e-29 Score=239.43 Aligned_cols=354 Identities=14% Similarity=0.059 Sum_probs=256.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHH
Q 010630 36 VASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAV 115 (505)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~ 115 (505)
+....+...+......+.+|.+.+++|.|+.+.+++.++..++..+++++.|+++| |+|||+.++. +.....++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d----r~g~r~~~~~-~~~~~~~~~ 79 (375)
T 2gfp_A 5 LVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISD----RVGRRPVILV-GMSIFMLAT 79 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHT----TSCCCCCCHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCCchhHHH-HHHHHHHHH
Confidence 34444555567777778888899999999999999999999999999999999999 9999999887 445555666
Q ss_pred HHHhcccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhh
Q 010630 116 LLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYA 195 (505)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~ 195 (505)
+...+.+++ +.+++.+++.|++.+...+...+++.|++|+++|+ +++++.+...++|..+++.
T Consensus 80 ~~~~~~~~~---------------~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~ 142 (375)
T 2gfp_A 80 LVAVTTSSL---------------TVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLR--HANSLLNMGILVSPLLAPL 142 (375)
T ss_dssp HHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCC--SHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccH---------------HHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHH--HHHHHHHHHHHHHHHhhHH
Confidence 666666555 78888999999999999999999999999999999 9999999999999999999
Q ss_pred ccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCCCCCcchHHHHHHH
Q 010630 196 TGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWE 275 (505)
Q Consensus 196 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (505)
+++++.... +||+.|.+.+++..+..++..+.+||+++++++++ +. + ++
T Consensus 143 ~~~~l~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~-------~---~~ 191 (375)
T 2gfp_A 143 IGGLLDTMW---------------NWRACYLFLLVLCAGVTFSMARWMPETRPVDAPRT------RL-------L---TS 191 (375)
T ss_dssp HHHHSSCHH---------------HHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTCCCC------CT-------T---TC
T ss_pred HHHHHHHhc---------------cHHHHHHHHHHHHHHHHHHHHHHCcccCCCCcccc------cH-------H---HH
Confidence 988743322 89999998887777776666677777654322110 00 0 01
Q ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 010630 276 LFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKL 355 (505)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l 355 (505)
.++.+|+ |.++...+..++..........+.+.|+.+.. + + +............+...++.++.+++
T Consensus 192 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g--------~--~~~~~g~~~~~~~~~~~~~~~~~~~l 258 (375)
T 2gfp_A 192 YKTLFGN--SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVL-G--------L--SSMTVSILFILPIPAAFFGAWFAGRP 258 (375)
T ss_dssp STHHHHH--HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHH-H--------H--HHHHHHHHHHTHHHHHHHHHHHHHTT
T ss_pred HHHHhcC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C--------C--CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1233445 67777777777777777777777777764322 1 1 11111222334567777888888999
Q ss_pred HHHhcchHHHHHHHHH-HHHHHH--HHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhc
Q 010630 356 CRKWGAGFIWGISNIL-MALCFL--AMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTE 432 (505)
Q Consensus 356 ~~r~g~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 432 (505)
.||++++. ..+..+ ...+.. ...... .+ +.+...+...+.|++.+...+...++..|..|
T Consensus 259 ~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~---~~------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p 321 (375)
T 2gfp_A 259 NKRFSTLM--WQSVICCLLAGLLMWIPDWFG---VM------------NVWTLLVPAALFFFGAGMLFPLATSGAMEPFP 321 (375)
T ss_dssp TTHHHHHH--HHHHHHHHHTSSSSSHHHHHH---HH------------HHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHhhhc---cc------------cHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 99887732 222222 222222 111110 00 34556667778888899888899999999987
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHH
Q 010630 433 SLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAV 477 (505)
Q Consensus 433 ~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~ 477 (505)
+++|++.|+.+....++..++|.+.|.+.+..+ +...+..
T Consensus 322 ---~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~--~~~~~~~ 361 (375)
T 2gfp_A 322 ---FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQ--GSLGLLM 361 (375)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHH--HHHHHHH
T ss_pred ---cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCc--ccHHHHH
Confidence 579999999999999999999999999988754 3344443
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-28 Score=243.03 Aligned_cols=392 Identities=15% Similarity=0.099 Sum_probs=239.3
Q ss_pred chhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHHhcccccccccCCC---CCCcchhHHH
Q 010630 65 HAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDR---GDFRPRAIAV 141 (505)
Q Consensus 65 ~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 141 (505)
..+.|++.+.+.++..++++++|+++| |+|||+.+++.. ++..++.++.++++......... ......+++.
T Consensus 54 ~~~~g~~~s~~~~G~~iG~~~~G~laD----r~GRk~~l~~~~-~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~ 128 (491)
T 4gc0_A 54 NSLLGFCVASALIGCIIGGALGGYCSN----RFGRRDSLKIAA-VLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPE 128 (491)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHH----HTCHHHHHHHHH-HHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HhcCHHHHHHHH-HHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHH
Confidence 456788999999999999999999999 999999888844 44555555555432210000000 0012344588
Q ss_pred HHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhhccccccccccccccccccccccccch
Q 010630 142 FVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANL 221 (505)
Q Consensus 142 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (505)
++++|++.|++.+...+...++++|+.|+++|+ +..++.+....+|.++++.++......... ......+|
T Consensus 129 l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-------~~~~~~~~ 199 (491)
T 4gc0_A 129 FVIYRIIGGIGVGLASMLSPMYIAELAPAHIRG--KLVSFNQFAIIFGQLLVYCVNYFIARSGDA-------SWLNTDGW 199 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHH--HHHHHHHHHHHHHHHHHHHHHHHHHTTSCT-------TTTTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhh--hhHHhhhhhhhhhhhhhhhcchhhcccccc-------ccccchhh
Confidence 999999999999999999999999999999999 999999999999998888776542111000 00011256
Q ss_pred hHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCCCC----------CcchHHHHHHHH-----HHHHhcccHH
Q 010630 222 KSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQ----------SSDVHEAFLWEL-----FGTFRYFSGT 286 (505)
Q Consensus 222 ~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~-----~~~~~~~~~~ 286 (505)
+..+.+..+. .+..++..++.||+|+....+.++++.++..+ +..+.+....+. .....+ .+.
T Consensus 200 ~~~~~~~~~~-~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 277 (491)
T 4gc0_A 200 RYMFASECIP-ALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTGGRLLMFG-VGV 277 (491)
T ss_dssp HHHHHTTHHH-HHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHSC-CTH
T ss_pred HHHhhhhhhh-hhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhhhhhHHHHhc-ccH
Confidence 7666655543 44445556778998765433322221110000 000000000000 011111 123
Q ss_pred HHHHHHHHHHHHH-hhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Q 010630 287 IWIILIVTALTWL-GWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIW 365 (505)
Q Consensus 287 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~~r~g~~~~~ 365 (505)
.........+.+. +......|.+... +.. +.+ ...........++...++.++.+++.||+|||+.+
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~ 345 (491)
T 4gc0_A 278 IVIGVMLSIFQQFVGINVVLYYAPEVF-KTL-GAS----------TDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQ 345 (491)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHH-HHS-SCC----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHhcchHHH-Hhc-CCC----------ccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchh
Confidence 3333333333332 3333343444333 211 100 01112223345677788889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHH-HhhchhHhHhhhhcccccchhHHHHH
Q 010630 366 GISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAI-TYSVPYALVSIRTESLGLGQGLSLGV 444 (505)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~g~ 444 (505)
..+.....++++.+...... .. ..+..++...+...+++. ..++.+.+.+|.+|. +.|+++.|+
T Consensus 346 ~~~~~~~~~~~~~l~~~~~~-----------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt--~~R~~~~g~ 410 (491)
T 4gc0_A 346 IIGALGMAIGMFSLGTAFYT-----------QA--PGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPN--AIRGKALAI 410 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-----------TC--CHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCT--TTHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhc-----------cc--chHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCH--hHHHHHHHH
Confidence 98888887777666544211 11 112222222222222222 235678899999999 999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhHhhhc----CCCchHHHHHHHHHHHHHHHHHHhccCCCCC
Q 010630 445 LNLAIVIPQIVVSMGSGPWDQLFG----GGNSPAFAVGGISALAGGLIAILAIPRSSAQ 499 (505)
Q Consensus 445 ~~~~~~~~~~i~~~~~g~l~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (505)
.+....+++++++.+.+.+.+... .+....|++.+++++++.++.+++.||+|.+
T Consensus 411 ~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~ 469 (491)
T 4gc0_A 411 AVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGK 469 (491)
T ss_dssp HHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCC
Confidence 999999999999988877654321 1134567788888888888888999988765
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-28 Score=237.63 Aligned_cols=394 Identities=13% Similarity=0.101 Sum_probs=234.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhHHH-HhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHH
Q 010630 30 LRKLLKVASVAGGIQFGWALQLSLLTPYVQ-ELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGA 108 (505)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~ 108 (505)
.++.+......+.....+....+++|.+++ ++|.|+.+.|++.++..++..++++++|+++| |+|||++++....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsD----r~Grr~~l~~~~~ 81 (417)
T 2cfq_A 6 NTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSD----KLGLRKYLLWIIT 81 (417)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHT----TSTTCCHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhcchHHHHHHHH
Confidence 344555555445555566666788888875 58999999999999999999999999999999 9999998887444
Q ss_pred HHHHH--HHHHHhcccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccc--cccchhhHhHHHHH
Q 010630 109 ISIAV--AVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGK--DHRRTRVANAYFSL 184 (505)
Q Consensus 109 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~ 184 (505)
+..+. ......+.+... .....++.+.+++.+...+...+...++.++ ++++ ...+....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~~ 145 (417)
T 2cfq_A 82 GMLVMFAPFFIFIFGPLLQ--------------YNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSN--FEFGRARM 145 (417)
T ss_dssp HTTSCHHHHHHHTHHHHHH--------------TTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHT--CCHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcc--cchHHHHH
Confidence 33221 111111111100 0011233333333333333333444444443 2344 55666666
Q ss_pred HHHHHHHHHhhccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCCCC
Q 010630 185 FMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQ 264 (505)
Q Consensus 185 ~~~~g~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 264 (505)
..++|..+++.+++++.. .+|++.|++.++..++..+..++..||+++.. ++ + +++++ ++
T Consensus 146 ~~~~g~~~~~~l~~~l~~----------------~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~-~~~~~-~~ 205 (417)
T 2cfq_A 146 FGCVGWALGASIVGIMFT----------------INNQFVFWLGSGCALILAVLLFFAKTDAPSSA-TV-A-NAVGA-NH 205 (417)
T ss_dssp STTTHHHHHHHHHHHHHH----------------HCSHHHHTTTTTTTTTHHHHSCSSCCCCSCSS-CS-S-SSSSS-CC
T ss_pred HHHHHHHHHHHHHHHHHH----------------hchhHHHHHHHHHHHHHHHHHHHcCccccccc-cc-c-ccccc-cc
Confidence 677888888887766211 16888888766554333333322233332111 10 0 00000 00
Q ss_pred CcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHH
Q 010630 265 SSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVV 344 (505)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (505)
+ + ...++.++.+++ |.++...+..+.....+..+....+.|+. +.++.. +.+.........+..+.
T Consensus 206 ~-~---~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-------~~~~~~~g~~~~~~~~~ 271 (417)
T 2cfq_A 206 S-A---FSLKLALELFRQ--PKLWFLSLYVIGVSCTYDVFDQQFANFFT-SFFATG-------EQGTRVFGYVTTMGELL 271 (417)
T ss_dssp C-C---CCHHHHHHHTTC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTSSSH-------HHHTHHHHHHHHHHHHH
T ss_pred c-c---ccHHHHHHHhcC--CchhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcc-------CCChhHHHHHHHHHHHH
Confidence 0 0 112344556666 77766655444433333333334455553 222100 00111111223334566
Q ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchh
Q 010630 345 LGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPY 424 (505)
Q Consensus 345 ~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 424 (505)
.+++.++.+++.||+|||+.+..+..+.+++++...+. + +.+..++...+.+++.+...+..+
T Consensus 272 ~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~--------------~---~~~~~~~~~~l~~~~~~~~~~~~~ 334 (417)
T 2cfq_A 272 NASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA--------------T---SALEVVILKTLHMFEVPFLLVGCF 334 (417)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC--------------C---SHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh--------------c---cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788999999999999999888777776665544332 1 234455555556666666666667
Q ss_pred HhHhhhhcccccchhHHHHH-HHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHhccCCCC
Q 010630 425 ALVSIRTESLGLGQGLSLGV-LNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPRSSA 498 (505)
Q Consensus 425 ~~~~~~~~~~~~~~g~~~g~-~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (505)
.++.|..|+ +.+|++++. ++....+|+.++|.+.|.+.+..| +...|.+.+++.+++.++.+...||+++
T Consensus 335 ~~~~~~~p~--~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g--~~~~f~~~~~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 335 KYITSQFEV--RFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG--FQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp HHHHHHSCH--HHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSH--HHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred HHHHHHCCH--HHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcC--cHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 899999999 999999998 488889999999999999999765 5667888788878777666665665443
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.2e-25 Score=222.42 Aligned_cols=407 Identities=11% Similarity=0.092 Sum_probs=230.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHH-HHhC------CCchhHHHHHHHhhhhhhhcccccceeccccCCCC-CCcchhHH
Q 010630 34 LKVASVAGGIQFGWALQLSLLTPYV-QELG------IPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRF-GRRRPFIV 105 (505)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g------~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~-Grr~~~~~ 105 (505)
+.+....+...++++....+++.++ +++| .+..+.+++.+++.++..+++++.|+++| |+ |||+.++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~d----r~~g~r~~~~~ 90 (524)
T 2xut_A 15 PYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIAD----RFFGKYNTILW 90 (524)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHT----TSSCSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhcchHHHHH
Confidence 3344444555566666667777776 6689 99999999999999999999999999999 99 99998877
Q ss_pred HHHHHHHHHHHHHhccc-ccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHH---
Q 010630 106 CGAISIAVAVLLIGLSA-DIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAY--- 181 (505)
Q Consensus 106 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--- 181 (505)
+.+...++.++..+++ +. +.+++.+++.|++.+...+...+++.|++|+++|+ ++.+.
T Consensus 91 -~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~--~~~~~~~~ 152 (524)
T 2xut_A 91 -LSLIYCVGHAFLAIFEHSV---------------QGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKS--LAQKAFDM 152 (524)
T ss_dssp -HHHHHHHHHHHHHHTSSCH---------------HHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTT--HHHHHHHH
T ss_pred -HHHHHHHHHHHHHHhcccH---------------HHHHHHHHHHHHhccccchhHHHHHHHHcCccchH--HHHHHHHH
Confidence 4455556666666655 54 77788899999999999999999999999999997 65555
Q ss_pred HHHHHHHHHHHHhhccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccC
Q 010630 182 FSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEG 261 (505)
Q Consensus 182 ~~~~~~~g~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 261 (505)
.....++|..+++.+++.+.... +|++.|++.+++.++..++..+..++.++.+.++++..+..+
T Consensus 153 ~~~~~~~g~~~g~~~~~~l~~~~---------------g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (524)
T 2xut_A 153 FYFTINFGSFFASLSMPLLLKNF---------------GAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLP 217 (524)
T ss_dssp HHHHHHHHHHHHHHTSTHHHHTS---------------CHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHhccc---------------cHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHH
Confidence 88899999999999988743222 899999988877665555443333322211111100000000
Q ss_pred C-----CCCc-chHH-HHHHH-----------------------------------------HHH--------HHhcccH
Q 010630 262 H-----EQSS-DVHE-AFLWE-----------------------------------------LFG--------TFRYFSG 285 (505)
Q Consensus 262 ~-----~~~~-~~~~-~~~~~-----------------------------------------~~~--------~~~~~~~ 285 (505)
. ++.. +.+. ....+ ..+ ..++ .+
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 296 (524)
T 2xut_A 218 VIRSALLTKVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSHPDAAVDG-VR 296 (524)
T ss_dssp ---------CTTHHHHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHHHHTGGGTHHHHSCCSCCSSSSTT-TT
T ss_pred HHHHHHhhhhcccCccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhcccccchhhHHhhhhccccHhHHHH-HH
Confidence 0 0000 0000 00000 000 0011 12
Q ss_pred HHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHH----HHhcc
Q 010630 286 TIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLC----RKWGA 361 (505)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~----~r~g~ 361 (505)
..+............+.....+.+.+. ....+.+... + ...+ .......+...+...+.+++. ||.++
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (524)
T 2xut_A 297 SVLRILVLFALVTPFWSLFDQKASTWI-LQANDMVKPQ---W---FEPA-MMQALNPLLVMLLIPFNNFVLYPAIERMGV 368 (524)
T ss_dssp THHHHHHHHTTSHHHHTTTSSTTTHHH-HHHHHSCCCS---S---SCHH-HHHTTSGGGHHHHGGGTTTC----------
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhH-HhHHhcCCCe---e---ecHH-HHHHHHHHHHHHhHHHHHhhhHHHHHhcCC
Confidence 221111111110000111111111111 1111111100 0 0111 111112223333444444432 44432
Q ss_pred ----hHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhcccccc
Q 010630 362 ----GFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLG 437 (505)
Q Consensus 362 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 437 (505)
++.+..+.++.+++++++........+ +...+.+..++..++.|++.+...+..++++.|..|+ +.
T Consensus 369 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~--~~ 438 (524)
T 2xut_A 369 KLTALRKMGAGIAITGLSWIVVGTIQLMMDG--------GSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPK--AM 438 (524)
T ss_dssp --CCHHHHHTHHHHHHHHHHTTTTTTTTTTT--------TCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCT--TC
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH--HH
Confidence 345556666666666554443100000 0011345566778888999998888899999999999 99
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcC--------CC-chHHHHHHHHHHHHHHHHHHhccCC
Q 010630 438 QGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGG--------GN-SPAFAVGGISALAGGLIAILAIPRS 496 (505)
Q Consensus 438 ~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~--------~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (505)
+|+++|+.++...+|+.++|.+.|.+.+..+. +. ...|.+.+++.+++.++.+++.++.
T Consensus 439 ~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (524)
T 2xut_A 439 KGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIVFALYARSY 506 (524)
T ss_dssp CTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999998874210 01 1225666666666665555554443
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.2e-12 Score=127.89 Aligned_cols=185 Identities=10% Similarity=0.072 Sum_probs=138.1
Q ss_pred HHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHH-hcchH
Q 010630 285 GTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRK-WGAGF 363 (505)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~~r-~g~~~ 363 (505)
+.++......++..++++....+.+.|+.+..... +++.......+......+...++.++.|+++|| +|||+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~ 86 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTG------DLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARP 86 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------SCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh------hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchH
Confidence 56677777777777777777777788875442100 011111122233445677888999999999999 89999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhcccccchhHHHH
Q 010630 364 IWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLG 443 (505)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g 443 (505)
.+..+.++.+++.++..+.+ +.+.+++..++.|++.+...+...+++.|.+|++++.|+.+++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 149 (491)
T 4aps_A 87 AVFWGGVLIMLGHIVLALPF-----------------GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFS 149 (491)
T ss_dssp HHHHHHHHHHHHHHHHHSCC-----------------STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh-----------------hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeeh
Confidence 99999998888887766542 3566777888899999999999999999999984444888999
Q ss_pred HHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHhcc
Q 010630 444 VLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIP 494 (505)
Q Consensus 444 ~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (505)
..+....+|..++|.+++.+.+..| +...|.+.++..+++.++.....+
T Consensus 150 ~~~~~~~~g~~~~~~~~~~l~~~~g--~~~~f~~~~~~~~~~~~~~~~~~~ 198 (491)
T 4aps_A 150 IFVFGINLGAFIAPLIVGAAQEAAG--YHVAFSLAAIGMFIGLLVYYFGGK 198 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSC--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHHHHHhCc
Confidence 9999999999999999999999866 667777777766666655554433
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=3.8e-12 Score=124.63 Aligned_cols=141 Identities=13% Similarity=0.052 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH----HHHHhhhccccCCCCCCChhHHHHHHHHHH
Q 010630 336 LGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLI----LYYVAIHMDYRGHDLPPNGIVIAALIIFTI 411 (505)
Q Consensus 336 ~~~~~~~~~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (505)
+......+...++.++.|+++||+|||+.+.++.++.+++.++..+ .. +.+.+++..++
T Consensus 66 ~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~l~~~~~l 128 (451)
T 1pw4_A 66 FALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATS-----------------SIAVMFVLLFL 128 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHS-----------------SSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccc-----------------cHHHHHHHHHH
Confidence 3344567778889999999999999999999999999998888877 42 35667778889
Q ss_pred HhhHHHHHhhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHH
Q 010630 412 LGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAIL 491 (505)
Q Consensus 412 ~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 491 (505)
.|++.+...+...+++.|.+|+ ++|++++|+.+....+|..++|.+++.+.+..| ++...|++.+++.++..++.++
T Consensus 129 ~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-~w~~~f~~~~~~~~~~~~~~~~ 205 (451)
T 1pw4_A 129 CGWFQGMGWPPCGRTMVHWWSQ--KERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN-DWHAALYMPAFCAILVALFAFA 205 (451)
T ss_dssp HHHHHHHTHHHHHHHHHTTCTT--THHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTC-CSTTCTHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhccchHHHHHHHHCCc--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999998 999999999999999999999999999888764 2456677777776666666656
Q ss_pred hccCC
Q 010630 492 AIPRS 496 (505)
Q Consensus 492 ~~~~~ 496 (505)
..||+
T Consensus 206 ~~~~~ 210 (451)
T 1pw4_A 206 MMRDT 210 (451)
T ss_dssp HCCCS
T ss_pred hccCC
Confidence 65554
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=3.2e-11 Score=117.51 Aligned_cols=114 Identities=11% Similarity=-0.106 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhH
Q 010630 336 LGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGP 415 (505)
Q Consensus 336 ~~~~~~~~~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 415 (505)
+......+...++.++.|+++||+|||+.+..+.++.+++.++...... . + +.+.+++..++.|++
T Consensus 65 ~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~---~--------~---~~~~l~~~~~l~G~~ 130 (438)
T 3o7q_A 65 LIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE---I--------M---NYTLFLVGLFIIAAG 130 (438)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH---T--------T---CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccc---c--------c---cHHHHHHHHHHHHhh
Confidence 3344467777889999999999999999999999999888887733210 0 1 467788888999999
Q ss_pred HHHHhhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHh
Q 010630 416 LAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQ 465 (505)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~ 465 (505)
.+...+...+++.|..|+ ++|++++++.+....+|..++|.+++.+.+
T Consensus 131 ~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 178 (438)
T 3o7q_A 131 LGCLETAANPFVTVLGPE--SSGHFRLNLAQTFNSFGAIIAVVFGQSLIL 178 (438)
T ss_dssp HHHHHHHHHHHHHHSSCS--TTHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHhhhhHHHHHHHHcCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999 999999999999999999999999999983
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.36 E-value=1e-11 Score=118.31 Aligned_cols=142 Identities=9% Similarity=0.079 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhH
Q 010630 336 LGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGP 415 (505)
Q Consensus 336 ~~~~~~~~~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 415 (505)
+......+...++.++.|+++||+|||+.+..+..+.+++.++..+.+ +.+..++...+.|++
T Consensus 39 ~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~-----------------~~~~l~~~~~l~g~~ 101 (375)
T 2gfp_A 39 SVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTS-----------------SLTVLIAASAMQGMG 101 (375)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhc-----------------cHHHHHHHHHHHHHH
Confidence 334446777888999999999999999999999999988888877764 567778888899999
Q ss_pred HHHHhhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHhccC
Q 010630 416 LAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPR 495 (505)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (505)
.+...+...+++.|..|+ ++|+++++..+....+|..++|.+++.+.+..| +...|.+.++..++..+...+..||
T Consensus 102 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (375)
T 2gfp_A 102 TGVGGVMARTLPRDLYER--TQLRHANSLLNMGILVSPLLAPLIGGLLDTMWN--WRACYLFLLVLCAGVTFSMARWMPE 177 (375)
T ss_dssp HHHHHHHHHHHHHHHHHT--SSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHH--HHHHHHHHHHHHHHHHCCCCCSSCC
T ss_pred HHhhhhhHHHHHHHHCCH--HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcc--HHHHHHHHHHHHHHHHHHHHHHCcc
Confidence 999999999999999998 899999999999999999999999999988765 5566777666666665544455555
Q ss_pred CCC
Q 010630 496 SSA 498 (505)
Q Consensus 496 ~~~ 498 (505)
+++
T Consensus 178 ~~~ 180 (375)
T 2gfp_A 178 TRP 180 (375)
T ss_dssp CST
T ss_pred cCC
Confidence 443
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.34 E-value=3.2e-11 Score=120.51 Aligned_cols=182 Identities=9% Similarity=0.017 Sum_probs=130.6
Q ss_pred HHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHh-cchH
Q 010630 285 GTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKW-GAGF 363 (505)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~~r~-g~~~ 363 (505)
+.++.+.+..++...+.+....+.+.|+.++ ++.... .+. ......+......+...++.++.|+++||+ |||+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~--~~~--s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~ 86 (524)
T 2xut_A 12 RQIPYIIASEACERFSFYGMRNILTPFLMTA-LLLSIP--EEL--RGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYN 86 (524)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHS-CSSCCS--SST--TTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccc--ccc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 5566666777777777777777778777533 330000 001 111112334446777788899999999999 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhcccccchhHHHH
Q 010630 364 IWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLG 443 (505)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g 443 (505)
.+.++.++.+++.++..+. +. +.+.+++..++.|++.+...+...+++.|.+|+ ++|++..+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~--------------~~--~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~--~~r~~~~~ 148 (524)
T 2xut_A 87 TILWLSLIYCVGHAFLAIF--------------EH--SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQ--SNKSLAQK 148 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHT--------------SS--CHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCST--TTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh--------------cc--cHHHHHHHHHHHHHhccccchhHHHHHHHHcCc--cchHHHHH
Confidence 9999988888888776655 20 256677778888999999889999999999998 77876555
Q ss_pred H---HHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHH
Q 010630 444 V---LNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAIL 491 (505)
Q Consensus 444 ~---~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 491 (505)
. .+....+|..++|.+++.+.+..| +...|.+.+++.+++.+..+.
T Consensus 149 ~~~~~~~~~~~g~~~g~~~~~~l~~~~g--~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 149 AFDMFYFTINFGSFFASLSMPLLLKNFG--AAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHTSTHHHHTSC--HHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccc--HHHHHHHHHHHHHHHHHHHHH
Confidence 5 888999999999999999998765 566777777666666554443
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1e-11 Score=123.01 Aligned_cols=179 Identities=16% Similarity=0.063 Sum_probs=117.5
Q ss_pred HHHHHHHhhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHHhcccccc
Q 010630 46 GWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIG 125 (505)
Q Consensus 46 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (505)
+......+.+.+.+..+.+............+...++.++.+++.| |+|||+.++..... ..++.+........
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d----r~Grr~~~~~~~~~-~~~~~~~l~~~~~~- 365 (491)
T 4gc0_A 292 GINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVD----KFGRKPLQIIGALG-MAIGMFSLGTAFYT- 365 (491)
T ss_dssp CHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHCSHHHHHHHHHH-HHHHHHHHHHHHHT-
T ss_pred hhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHH----hhcCcchhccchHH-HHHHHHHHHHHHhc-
Confidence 4455566777778888988888887777888888899999999999 99999888764433 33333333221111
Q ss_pred cccCCCCCCcchhHHHHHHHHHHHHhhhhc-ccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhhccccccccc
Q 010630 126 WLLGDRGDFRPRAIAVFVFGFWILDVANNM-TQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFK 204 (505)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l~~~~~~~~ 204 (505)
. ... +..++...+...+.+. ..+..+.+.+|.+|.+.|+ .+.++......++..+++.+.+.+....
T Consensus 366 -------~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~--~~~g~~~~~~~~~~~i~~~~~p~l~~~~ 433 (491)
T 4gc0_A 366 -------Q-APG--IVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRG--KALAIAVAAQWLANYFVSWTFPMMDKNS 433 (491)
T ss_dssp -------T-CCH--HHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHH--HHHHHHHHHHHHHHHHHHTHHHHHCHHH
T ss_pred -------c-cch--HHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 011 1122222222222222 2345678999999999999 8999999999999888877654421100
Q ss_pred cccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCC
Q 010630 205 ILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSH 251 (505)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~ 251 (505)
......++...|++.++++++..++.++++||++.+..
T Consensus 434 ---------~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tL 471 (491)
T 4gc0_A 434 ---------WLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTL 471 (491)
T ss_dssp ---------HHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCH
T ss_pred ---------HHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCH
Confidence 00000145567888888888888888899999987654
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=5.6e-11 Score=114.91 Aligned_cols=165 Identities=8% Similarity=0.004 Sum_probs=112.9
Q ss_pred HHHHHHhhhhHHHH-hC---CCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHHhccc
Q 010630 47 WALQLSLLTPYVQE-LG---IPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSA 122 (505)
Q Consensus 47 ~~~~~~~~~~~~~~-~g---~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~ 122 (505)
+......+|.|.++ ++ .+....++..++..+...++.++.|+++| |+|||+.++. +.....+..+...+.+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~d----r~g~~~~l~~-~~~~~~~~~~~~~~~~ 310 (417)
T 2cfq_A 236 YDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIIN----RIGGKNALLL-AGTIMSVRIIGSSFAT 310 (417)
T ss_dssp HHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH----HHCHHHHHHH-HHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHH----HhcHHHHHHH-HHHHHHHHHHHHHHhc
Confidence 33333446666543 33 22445677788888888889999999999 9999987766 4444455555554443
Q ss_pred ccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHH-HHHHHHHHHHHHhhcccccc
Q 010630 123 DIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAY-FSLFMAVGNILGYATGSFSG 201 (505)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~~~g~~ig~~l~~~~~ 201 (505)
+. +.+++...+.+++.+...+...++++|.+|++.|+ .+.+. .+....+|..++|.+++++.
T Consensus 311 ~~---------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g--~~~g~~~~~~~~lg~~~gp~l~G~l~ 373 (417)
T 2cfq_A 311 SA---------------LEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSA--TIYLVCFCFFKQLAMIFMSVLAGNMY 373 (417)
T ss_dssp SH---------------HHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHH--HHHHHHHTTTHHHHHHHHTHHHHTHH
T ss_pred cH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH--HHHHHHHHHHHhHHHHHhhhhHHHHH
Confidence 32 44444455555665555666788999999999999 77787 47788899999999888733
Q ss_pred ccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCC
Q 010630 202 WFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPL 248 (505)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~ 248 (505)
... +++..|.+.+++.++..++.++..||+++
T Consensus 374 ~~~---------------g~~~~f~~~~~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 374 ESI---------------GFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp HHS---------------HHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred Hhc---------------CcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 221 67778888887777776666666666544
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 505 | ||||
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 9e-05 | |
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 2e-04 |
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 42.5 bits (98), Expect = 9e-05
Identities = 41/400 (10%), Positives = 98/400 (24%), Gaps = 26/400 (6%)
Query: 31 RKLLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHF 89
F ++ I + II+ + L QPL G
Sbjct: 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLL 66
Query: 90 SDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWIL 149
SD + G R+ + + + + + G L
Sbjct: 67 SD----KLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYN--------ILVGSIVGGIYL 114
Query: 150 DVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFT 209
N A + ++ + + A + + A+G + + + F
Sbjct: 115 GFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQF------ 168
Query: 210 LTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVH 269
+ + ++F A T S++ +H + + +
Sbjct: 169 -----VFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLW 223
Query: 270 EAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYAT 329
L+ + + Y T+ G +F E+
Sbjct: 224 FLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLII 283
Query: 330 GVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAM--LILYYVAI 387
G L+L ++ + + + + + + I +
Sbjct: 284 NRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEV 343
Query: 388 HMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALV 427
+ + A+I ++L G + + A +
Sbjct: 344 RFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYL 383
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 41.6 bits (96), Expect = 2e-04
Identities = 60/464 (12%), Positives = 121/464 (26%), Gaps = 54/464 (11%)
Query: 32 KLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSD 91
++ + +L PY+ E G ++ F + ++G SD
Sbjct: 25 QIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSD 84
Query: 92 RCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDV 151
R R ++ L + +IAV ++
Sbjct: 85 ----RSNPRVFLPAGLILAA------------AVMLFMGFVPWATSSIAVMFVLLFLCGW 128
Query: 152 ANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLT 211
M PC + + R V+ + G L F L
Sbjct: 129 FQGMGWPPCGRTMVHWWSQKERGGIVSVWNC-------------AHNVGGGIPPLLFLLG 175
Query: 212 SACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEA 271
A D I +A+ + + E
Sbjct: 176 MAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQEL 235
Query: 272 FLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGV 331
++F + + +W I I +L + L + ++ + +
Sbjct: 236 TAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYL-----------KEVKHFAL 284
Query: 332 RMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDY 391
+ L ++L + K G M L +A ++ +
Sbjct: 285 DKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAG--- 341
Query: 392 RGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVI 451
P +I ++I ++ GP+ + L + G + G L +
Sbjct: 342 -----NPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAAGFTGLFGYL 390
Query: 452 PQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPR 495
V + + F G + + G S LA L+ ++ I
Sbjct: 391 GGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGE 434
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 505 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 100.0 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.96 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.32 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.21 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7.7e-33 Score=269.77 Aligned_cols=379 Identities=15% Similarity=0.127 Sum_probs=258.7
Q ss_pred hhhhHHHHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHHhcccccccccCCCC
Q 010630 53 LLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRG 132 (505)
Q Consensus 53 ~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (505)
.+.++++++|+|.++.|++.+++.++.+++++++|+++| |+|||+.++. +.+...++.+++++.+...
T Consensus 46 ~~~p~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~D----r~g~r~~~~~-~~~~~~~~~~~~~~~~~~~------- 113 (447)
T d1pw4a_ 46 LAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSD----RSNPRVFLPA-GLILAAAVMLFMGFVPWAT------- 113 (447)
T ss_dssp HHHHHTTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHH----HSCHHHHHHH-HHHHHHHHHHHHHHCHHHH-------
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HcCchHHHHH-HHHHHHHHHhhccccchhh-------
Confidence 444566779999999999999999999999999999999 9999998877 4444555555555443220
Q ss_pred CCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHHHHHHHhhccccccccccccccccc
Q 010630 133 DFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTS 212 (505)
Q Consensus 133 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~l~~~~~~~~~~~~~~~~ 212 (505)
..++.+++.+++.|++.+...+...+++.|++|+++|+ +++++.+....+|..+++.+++......
T Consensus 114 ----~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~--~~~~~~~~~~~~g~~i~~~~~~~~~~~~-------- 179 (447)
T d1pw4a_ 114 ----SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERG--GIVSVWNCAHNVGGGIPPLLFLLGMAWF-------- 179 (447)
T ss_dssp ----SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHH--HHHHHHHHHHHHHHTSHHHHHHHHHHHT--------
T ss_pred ----hhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhccc--ccccccccccchhhhhhhhhhhhHhhhh--------
Confidence 11267788899999999999999999999999999999 9999999999999999988776522111
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCCCC---CcchHH--HHHHHHHHHHhcccHHH
Q 010630 213 ACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQ---SSDVHE--AFLWELFGTFRYFSGTI 287 (505)
Q Consensus 213 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~ 287 (505)
.+|++.|++.+++..+..++.++..+|+|+.......++.+++..+ ++.+++ .........+++ +.+
T Consensus 180 ------~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 251 (447)
T d1pw4a_ 180 ------NDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPN--KLL 251 (447)
T ss_dssp ------CCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSC--HHH
T ss_pred ------hcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhhhhcccchhhccccccchhhHHHHHHHcC--chH
Confidence 2789999998888888888888888877665443322221111110 000000 011112233444 777
Q ss_pred HHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Q 010630 288 WIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGI 367 (505)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~~r~g~~~~~~~ 367 (505)
+......++..........+.+.|+.+. ++ + +............+..+++.++.+++.||+++++....
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--------~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 320 (447)
T d1pw4a_ 252 WYIAIANVFVYLLRYGILDWSPTYLKEV-KH--------F--ALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGAT 320 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHBTTB-SC--------C--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHH
T ss_pred HHHHHHhhhhhhhhhcchhhhhhhcccc-cc--------c--ccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccc
Confidence 7777777777766667777777766321 11 1 11222333444677788899999999999988765443
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHhhhhcccccchhHHHHHHHH
Q 010630 368 SNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGLSLGVLNL 447 (505)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 447 (505)
......+.......... ....+.+...+..++.|++.+...+....+..|..|+ +.+|++.|+.+.
T Consensus 321 ~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~--~~~g~~~g~~~~ 386 (447)
T d1pw4a_ 321 GVFFMTLVTIATIVYWM------------NPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPK--KAAGTAAGFTGL 386 (447)
T ss_dssp HHHHHHHHHHHHHHTTS------------CCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCT--THHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHh------------cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH--HHHHHHHHHHHH
Confidence 33332222222222110 1112456666677777887777777888899999998 999999999998
Q ss_pred HHHH-HHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHh
Q 010630 448 AIVI-PQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILA 492 (505)
Q Consensus 448 ~~~~-~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 492 (505)
...+ +..++|.+.|.+.|..| +...+.+.+++.+++.++....
T Consensus 387 ~~~~~g~~~~~~~~g~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~ 430 (447)
T d1pw4a_ 387 FGYLGGSVAASAIVGYTVDFFG--WDGGFMVMIGGSILAVILLIVV 430 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSC--SHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhC--hHHHHHHHHHHHHHHHHHHHHH
Confidence 8887 45678999999999976 5566666666666655555444
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=1.1e-27 Score=230.05 Aligned_cols=399 Identities=14% Similarity=0.059 Sum_probs=250.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHH
Q 010630 30 LRKLLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGA 108 (505)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~ 108 (505)
.+..|.+....+...+......+++|.++ +++|.|+.++|++.++..++..+++|++|+++| |+||||.++....
T Consensus 6 n~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~D----r~grr~~l~~~~~ 81 (417)
T d1pv7a_ 6 NTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSD----KLGLRKYLLWIIT 81 (417)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHH----HHTTCTHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCchHHHHHHHH
Confidence 35567777777777778888888999876 568999999999999999999999999999999 9999998887444
Q ss_pred HHHHHHHHHHhcccccccccCCCCCCcchhHHHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHHHHHHHH
Q 010630 109 ISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAV 188 (505)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 188 (505)
. ..++........+. .......++...+.+.+.+...........+..+++.+...+..+........
T Consensus 82 ~-~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (417)
T d1pv7a_ 82 G-MLVMFAPFFIFIFG-----------PLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCV 149 (417)
T ss_dssp H-HHHTHHHHHHHTHH-----------HHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHH
T ss_pred H-HHHHHHHHHHhhhh-----------hhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhcc
Confidence 4 33333333333221 00111223334344444444444444444433333222211456666777777
Q ss_pred HHHHHhhccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCcccCCCCCcch
Q 010630 189 GNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDV 268 (505)
Q Consensus 189 g~~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 268 (505)
+..+++.+++.+.. .+|+..+........+..++..+..+|++...+++++++++++. .
T Consensus 150 ~~~~~~~~~~~l~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~- 208 (417)
T d1pv7a_ 150 GWALGASIVGIMFT----------------INNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSA----F- 208 (417)
T ss_dssp HHHHHHHHHHHHHH----------------HCHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHHSCCCC----C-
T ss_pred cccccccccccccc----------------ccccccccchhhHHHHHHHHHHHHhcccccchhhhhhhhhhccc----c-
Confidence 88888877766221 15666666666666666666667777665544332111111110 0
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhHhHHhhhHHHHHHHHhCCCCCCcccccccchhhHHHHHHHHHHHHHH
Q 010630 269 HEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGIT 348 (505)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 348 (505)
.+ +...+..++ +..+......................+.. ... . ....+............+...++
T Consensus 209 ~~---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~--~~~~~~~~~~~~~~~~~~~~~~~ 275 (417)
T d1pv7a_ 209 SL---KLALELFRQ--PKLWFLSLYVIGVSCTYDVFDQQFANFFT---SFF---A--TGEQGTRVFGYVTTMGELLNASI 275 (417)
T ss_dssp CH---HHHHHHTTS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHT---TSS---S--CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cc---ccccccccc--ccccchhhhhHHHHHHHHhhhcccccccc---ccc---c--ccccchhhhcccccccccccccc
Confidence 11 111222222 22232222222222222222111111110 000 0 00111111223333456667788
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHHHHhhchhHhHh
Q 010630 349 SVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVS 428 (505)
Q Consensus 349 ~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 428 (505)
..+.+++.||.++|+.+..+..+.+++.+++.+.. +.+..++...+.|++.+...+...+++.
T Consensus 276 ~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~ 338 (417)
T d1pv7a_ 276 MFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFAT-----------------SALEVVILKTLHMFEVPFLLVGCFKYIT 338 (417)
T ss_dssp HTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCC-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhcccccccchhhhHHHHHHhhhcccccc-----------------ccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999888888777666552 4677778888899999999999999999
Q ss_pred hhhcccccchhHHHHHH-HHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHhccCCCCC
Q 010630 429 IRTESLGLGQGLSLGVL-NLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPRSSAQ 499 (505)
Q Consensus 429 ~~~~~~~~~~g~~~g~~-~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (505)
|.+|+ +.+|++.|+. +....+|..++|.+.|++.|..| +...|++.+++.+++.++..+..+++++.
T Consensus 339 ~~~~~--~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 406 (417)
T d1pv7a_ 339 SQFEV--RFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG--FQGAYLVLGLVALGFTLISVFTLSGPGPL 406 (417)
T ss_dssp HHSCG--GGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHHHSCCSSCT
T ss_pred HHCCH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Confidence 99999 9999999975 56678999999999999999987 66778888888887777777776665543
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.32 E-value=8.2e-11 Score=112.46 Aligned_cols=142 Identities=13% Similarity=0.054 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCChhHHHHHHHHHHHhhHHH
Q 010630 338 LMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLA 417 (505)
Q Consensus 338 ~~~~~~~~~i~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 417 (505)
.....++..++.++.|+++||+|||+.+..+.++.+++.++..+...... +.+..++...+.|++.+
T Consensus 65 ~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~g~~~~ 131 (447)
T d1pw4a_ 65 LSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATS-------------SIAVMFVLLFLCGWFQG 131 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHS-------------SSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhh-------------hHHHHHHHHHHHHHhhh
Confidence 34467778899999999999999999999999998888887766531111 34567777888899888
Q ss_pred HHhhchhHhHhhhhcccccchhHHHHHHHHHHHHHHHHHHhhhhhhHhhhcCCCchHHHHHHHHHHHHHHHHHHhccC
Q 010630 418 ITYSVPYALVSIRTESLGLGQGLSLGVLNLAIVIPQIVVSMGSGPWDQLFGGGNSPAFAVGGISALAGGLIAILAIPR 495 (505)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (505)
...+...+++.|.+|+ ++|++++|+.+....+|..+++.+++.+.+..+ ++...+.+.+.+.++..++.+...++
T Consensus 132 ~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~-~w~~~~~~~~~~~~~~~~~~~~~~~~ 206 (447)
T d1pw4a_ 132 MGWPPCGRTMVHWWSQ--KERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN-DWHAALYMPAFCAILVALFAFAMMRD 206 (447)
T ss_dssp HTHHHHHHHHHTTCTT--THHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTC-CSTTCTHHHHHHHHHHHHHHHHHCCC
T ss_pred hhhhHHHHHHHHHHHh--hcccccccccccccchhhhhhhhhhhhHhhhhh-cccccchhhhhhHHHHHHHHHHhccc
Confidence 8888889999999998 999999999999999999999999998887764 34556666666666665555555544
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.21 E-value=1e-12 Score=124.21 Aligned_cols=151 Identities=8% Similarity=-0.035 Sum_probs=119.1
Q ss_pred HhCCCchhHHHHHHHhhhhhhhcccccceeccccCCCCCCcchhHHHHHHHHHHHHHHHhcccccccccCCCCCCcchhH
Q 010630 60 ELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAI 139 (505)
Q Consensus 60 ~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D~~~~r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (505)
+.+.+....+.......+...++..+.+++.| |+|||+.+.. +.+...++.+...+.++.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----r~~~~~~~~~-~~~~~~~~~~~~~~~~~~--------------- 312 (417)
T d1pv7a_ 253 TGEQGTRVFGYVTTMGELLNASIMFFAPLIIN----RIGGKNALLL-AGTIMSVRIIGSSFATSA--------------- 312 (417)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHH----HHCHHHHHHH-HHHHHHHHHHHHHTCCCH---------------
T ss_pred ccccchhhhcccccccccccccchhhhhhhhc----ccccccchhh-hHHHHHHhhhcccccccc---------------
Confidence 34455667778888888899999999999999 9999987777 445555666666666654
Q ss_pred HHHHHHHHHHHhhhhcccchhhhHhhhcccccccchhhHhHHH-HHHHHHHHHHHhhccccccccccccccccccccccc
Q 010630 140 AVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYF-SLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDC 218 (505)
Q Consensus 140 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~~~~g~~ig~~l~~~~~~~~~~~~~~~~~~~~~~ 218 (505)
+..++...+.+++.+...+...+++.|.+|+++|+ ++.+.. +....+|..+++.+.+++.+..
T Consensus 313 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~i~~~~~G~l~~~~-------------- 376 (417)
T d1pv7a_ 313 LEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSA--TIYLVCFCFFKQLAMIFMSVLAGNMYESI-------------- 376 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHH--HHHHHHHTTTHHHHHHHHHHHHHHHHHHH--------------
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------
Confidence 66677777888999999999999999999999999 888874 5667899999999888744333
Q ss_pred cchhHHHHHHHHHHHHHHHHhhhccccCC
Q 010630 219 ANLKSAFFLDVIFIAITTCISASAAHEVP 247 (505)
Q Consensus 219 ~~~~~~f~~~~~~~~~~~~~~~~~~~e~~ 247 (505)
+++..|++.+++.++..++..+.+++++
T Consensus 377 -g~~~~~~~~~~~~~~~~~~~~~~l~~~~ 404 (417)
T d1pv7a_ 377 -GFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHSCCSS
T ss_pred -CHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 8889999988888888777777776554
|